Your job contains 1 sequence.
>013430
MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHSYLSPSLSIFLIKNFRL
GFFEIHYFGRKQIFVRPYPFSIFKFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQK
EIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT
FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFL
EAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERC
SKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKL
YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQI
VGLCQALNDILDSMAKKGLPIPV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013430
(443 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2159961 - symbol:COP8 "AT5G42970" species:3702... 1568 9.4e-176 2
DICTYBASE|DDB_G0293844 - symbol:csn4 "proteasome componen... 859 6.2e-93 2
RGD|1302952 - symbol:Cops4 "COP9 signalosome subunit 4" s... 907 5.7e-91 1
UNIPROTKB|Q5ZJV0 - symbol:COPS4 "Uncharacterized protein"... 906 7.3e-91 1
UNIPROTKB|E2RT55 - symbol:COPS4 "Uncharacterized protein"... 906 7.3e-91 1
UNIPROTKB|Q9BT78 - symbol:COPS4 "COP9 signalosome complex... 906 7.3e-91 1
UNIPROTKB|A7Y521 - symbol:COPS4 "COP9 signalosome complex... 906 7.3e-91 1
MGI|MGI:1349414 - symbol:Cops4 "COP9 (constitutive photom... 905 9.3e-91 1
ZFIN|ZDB-GENE-030131-4317 - symbol:cops4 "COP9 constituti... 905 9.3e-91 1
UNIPROTKB|Q3SZA0 - symbol:COPS4 "COP9 signalosome complex... 903 1.5e-90 1
FB|FBgn0027054 - symbol:CSN4 "COP9 complex homolog subuni... 868 7.7e-87 1
UNIPROTKB|D6RAX7 - symbol:COPS4 "COP9 signalosome complex... 858 8.9e-86 1
ASPGD|ASPL0000047008 - symbol:csnD species:162425 "Emeric... 720 3.7e-71 1
UNIPROTKB|D6RD63 - symbol:COPS4 "COP9 signalosome complex... 684 2.4e-67 1
UNIPROTKB|G4NCX3 - symbol:MGG_00336 "COP9 signalosome com... 562 2.1e-54 1
WB|WBGene00000816 - symbol:csn-4 species:6239 "Caenorhabd... 557 7.0e-54 1
UNIPROTKB|Q9N359 - symbol:csn-4 "COP9 signalosome complex... 557 7.0e-54 1
POMBASE|SPAC22A12.03c - symbol:csn4 "COP9/signalosome com... 190 3.0e-12 2
RGD|1359305 - symbol:Psmd12 "proteasome (prosome, macropa... 145 6.1e-07 1
TAIR|locus:2176100 - symbol:RPN5B "AT5G64760" species:370... 146 9.1e-07 2
MGI|MGI:1914247 - symbol:Psmd12 "proteasome (prosome, mac... 143 1.0e-06 1
DICTYBASE|DDB_G0281051 - symbol:psmD12 "26S proteasome no... 147 1.2e-06 2
UNIPROTKB|Q2KJ25 - symbol:PSMD12 "26S proteasome non-ATPa... 142 1.3e-06 1
UNIPROTKB|F1RSM2 - symbol:PSMD12 "Uncharacterized protein... 142 1.3e-06 1
UNIPROTKB|O00232 - symbol:PSMD12 "26S proteasome non-ATPa... 141 1.7e-06 1
UNIPROTKB|Q5RBI3 - symbol:PSMD12 "26S proteasome non-ATPa... 141 1.7e-06 1
POMBASE|SPAC1420.03 - symbol:rpn501 "19S proteasome regul... 140 2.1e-06 1
POMBASE|SPAPB8E5.02c - symbol:rpn502 "19S proteasome regu... 140 2.1e-06 1
ZFIN|ZDB-GENE-030131-617 - symbol:psmd12 "proteasome (pro... 140 2.2e-06 1
UNIPROTKB|F1NPQ0 - symbol:LOC100859465 "Uncharacterized p... 138 3.6e-06 1
ASPGD|ASPL0000076235 - symbol:AN4775 species:162425 "Emer... 136 6.7e-06 1
SGD|S000002306 - symbol:RPN5 "Subunit of the CSN and 26S ... 134 9.6e-06 1
WB|WBGene00004462 - symbol:rpn-6.1 species:6239 "Caenorha... 131 2.0e-05 1
UNIPROTKB|Q20938 - symbol:rpn-6.1 "Probable 26S proteasom... 131 2.0e-05 1
ASPGD|ASPL0000014128 - symbol:AN10519 species:162425 "Eme... 130 2.4e-05 1
CGD|CAL0003109 - symbol:RPN6 species:5476 "Candida albica... 125 9.1e-05 1
UNIPROTKB|G4NAA5 - symbol:MGG_03211 "26S proteasome non-A... 124 0.00011 1
UNIPROTKB|P68359 - symbol:CSN4 "COP9 signalosome complex ... 96 0.00046 1
>TAIR|locus:2159961 [details] [associations]
symbol:COP8 "AT5G42970" species:3702 "Arabidopsis
thaliana" [GO:0008180 "signalosome" evidence=IDA;TAS;IPI]
[GO:0009640 "photomorphogenesis" evidence=RCA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010388 "cullin deneddylation"
evidence=RCA;IMP] [GO:0010971 "positive regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043234
"protein complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0007275
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000085
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009585 EMBL:AB008264
GO:GO:0008180 GO:GO:0010388 EMBL:AF176089 EMBL:AF395060
EMBL:AY087068 EMBL:AK176360 IPI:IPI00545035 PIR:T52302
RefSeq:NP_199111.1 UniGene:At.23570 ProteinModelPortal:Q8L5U0
SMR:Q8L5U0 IntAct:Q8L5U0 STRING:Q8L5U0 PaxDb:Q8L5U0 PRIDE:Q8L5U0
EnsemblPlants:AT5G42970.1 GeneID:834312 KEGG:ath:AT5G42970
GeneFarm:4497 TAIR:At5g42970 eggNOG:NOG298640 HOGENOM:HOG000158382
InParanoid:Q8L5U0 KO:K12178 OMA:YNELSYR PhylomeDB:Q8L5U0
ProtClustDB:CLSN2686637 Genevestigator:Q8L5U0 GermOnline:AT5G42970
Uniprot:Q8L5U0
Length = 397
Score = 1568 (557.0 bits), Expect = 9.4e-176, Sum P(2) = 9.4e-176
Identities = 310/358 (86%), Positives = 331/358 (92%)
Query: 86 FFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIR 145
F +LSDDVPLVVSRQLLQ+FAQELGRLEPETQKEIA +TL QIQPRVVSFEEQ L+IR
Sbjct: 40 FIDHILSDDVPLVVSRQLLQSFAQELGRLEPETQKEIAQFTLTQIQPRVVSFEEQALVIR 99
Query: 146 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAF 205
EKLA LYESEQ+WSKAAQMLSGIDLDSGMR +DD F+LSKC+QIARLYLEDDDAVNAEAF
Sbjct: 100 EKLAGLYESEQEWSKAAQMLSGIDLDSGMRAVDDNFKLSKCIQIARLYLEDDDAVNAEAF 159
Query: 206 INKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEE 265
INKASFLVS+SQ EVLNLQYKVCYARILD+KRKFLEAALRYY ISQI++RQIGDE IDE
Sbjct: 160 INKASFLVSNSQNEVLNLQYKVCYARILDMKRKFLEAALRYYGISQIEQRQIGDEEIDEN 219
Query: 266 ALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDA 325
ALEQALSAAVTCTILA AGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILR+PEIDA
Sbjct: 220 ALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRRPEIDA 279
Query: 326 FAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIAS 385
F+EEL+PHQKA LPD TVLDRAMIEHNLLSASKLYTNI F+ELGTLL I P+KAEKIA+
Sbjct: 280 FSEELRPHQKASLPDKSTVLDRAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAA 339
Query: 386 RMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPIPV 443
MI +DRMRGSIDQ EAVIHFEDD EELQQWDQQI GLCQALNDILD MAKKG+ +PV
Sbjct: 340 NMIGQDRMRGSIDQEEAVIHFEDDVEELQQWDQQISGLCQALNDILDGMAKKGMSVPV 397
Score = 161 (61.7 bits), Expect = 9.4e-176, Sum P(2) = 9.4e-176
Identities = 35/62 (56%), Positives = 46/62 (74%)
Query: 1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHSYLSPSLSIFLIKNFRL 60
M+ AL +ASAI DQRQKIEQYK ILSSV+SSND++QA++FIDH LS + + + +
Sbjct: 1 MDEALTNASAIGDQRQKIEQYKLILSSVLSSNDLLQAQRFIDH-ILSDDVPLVVSRQLLQ 59
Query: 61 GF 62
F
Sbjct: 60 SF 61
>DICTYBASE|DDB_G0293844 [details] [associations]
symbol:csn4 "proteasome component region PCI (PINT)
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008180 "signalosome" evidence=IEA;ISS;IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 dictyBase:DDB_G0293844 GO:GO:0005737
GenomeReviews:CM000155_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 eggNOG:NOG298640 KO:K12178 OMA:YNELSYR EMBL:DQ309432
EMBL:AAFI02000222 RefSeq:XP_628938.1 HSSP:O88544
ProteinModelPortal:Q54B82 SMR:Q54B82 STRING:Q54B82 PRIDE:Q54B82
EnsemblProtists:DDB0233102 GeneID:8629446 KEGG:ddi:DDB_G0293844
ProtClustDB:CLSZ2429214 Uniprot:Q54B82
Length = 393
Score = 859 (307.4 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
Identities = 178/353 (50%), Positives = 246/353 (69%)
Query: 84 KFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 143
K F + + PLV+SR +L +F L + Q E+ + L +IQ RVV+FEEQV
Sbjct: 43 KVFITHLTDESTPLVISRTILLSFTSSHKTLPEDIQMELGIFVLDRIQNRVVAFEEQVSE 102
Query: 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 203
IR LA LYE ++ W ++A+ L I LDS RVI +++ V+IARL+LE++++ AE
Sbjct: 103 IRYNLAKLYERQENWRESARCLIAIPLDSSQRVISPEYKVKIYVKIARLFLEEEESGQAE 162
Query: 204 AFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 263
+IN+AS + + + L L +K C+ARI+D KR FL+A+LRYYD+SQ + D
Sbjct: 163 TYINRASDSLHLVKNQKLILAHKTCFARIMDYKRMFLKASLRYYDLSQCLPK-------D 215
Query: 264 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI 323
E + ALS A+ C IL AGPQRSR LATLYKDER +L +Y L+K++LERIL+K E+
Sbjct: 216 TERMH-ALSCAIVCAILDKAGPQRSRTLATLYKDERSQQLGVYTFLEKMFLERILKKTEV 274
Query: 324 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKI 383
FAE+LKPHQ ALL D TVLDRA+IEHNLLSASKLY NI+F+ELG+LL I +KAEK+
Sbjct: 275 KKFAEQLKPHQMALLSDGNTVLDRAVIEHNLLSASKLYNNITFDELGSLLEIQAEKAEKV 334
Query: 384 ASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 436
AS+M+ E+R+ GSIDQ+E +I FE+ + L QWD++I GLC +N+I++S++K
Sbjct: 335 ASKMVCEERLIGSIDQIERLIQFENVGDSLTQWDKKIEGLCIHMNNIIESISK 387
Score = 86 (35.3 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHSYLSPSLSIFLIKNFRL 60
++ L SA++D + K E+YK IL ++ S + K FI H S + + + L
Sbjct: 6 LKQILEETSALSDHKTKTEKYKSILQQLVESKQVAPLKVFITH-LTDESTPLVISRTILL 64
Query: 61 GFFEIH 66
F H
Sbjct: 65 SFTSSH 70
>RGD|1302952 [details] [associations]
symbol:Cops4 "COP9 signalosome subunit 4" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008180 "signalosome"
evidence=IEA;ISO] [GO:0010388 "cullin deneddylation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 RGD:1302952
GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008180
GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
OMA:YNELSYR CTD:51138 GeneTree:ENSGT00530000063471
HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F EMBL:BC079384 IPI:IPI00193349
RefSeq:NP_001004275.1 UniGene:Rn.7506 ProteinModelPortal:Q68FS2
SMR:Q68FS2 STRING:Q68FS2 PhosphoSite:Q68FS2 PRIDE:Q68FS2
Ensembl:ENSRNOT00000003046 GeneID:360915 KEGG:rno:360915
InParanoid:Q68FS2 NextBio:674575 Genevestigator:Q68FS2
GermOnline:ENSRNOG00000023650 Uniprot:Q68FS2
Length = 406
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 188/353 (53%), Positives = 252/353 (71%)
Query: 84 KFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 143
K F A+++++V LV+SRQLL F L L T KE+ ++TL ++QPRV+SFEEQV
Sbjct: 46 KAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEVYHFTLEKVQPRVISFEEQVAS 105
Query: 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 203
IR++LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V AE
Sbjct: 106 IRQRLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAE 165
Query: 204 AFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 263
A+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 166 AYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSY---KTIVHES-- 220
Query: 264 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI 323
E LE AL A+ CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R ++
Sbjct: 221 -ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQL 278
Query: 324 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKI 383
FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEKI
Sbjct: 279 QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKI 338
Query: 384 ASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 436
AS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 339 ASQMITEGRMNGFIDQIDGIVHFET-REALPTWDKQIQSLCFQVNNLLEKISQ 390
>UNIPROTKB|Q5ZJV0 [details] [associations]
symbol:COPS4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008180 "signalosome" evidence=IEA] [GO:0010388 "cullin
deneddylation" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008180
GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
OMA:YNELSYR CTD:51138 GeneTree:ENSGT00530000063471
HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F EMBL:AADN02009032
EMBL:AJ720334 IPI:IPI00578250 RefSeq:NP_001006447.1
UniGene:Gga.6980 SMR:Q5ZJV0 IntAct:Q5ZJV0 STRING:Q5ZJV0
Ensembl:ENSGALT00000018144 GeneID:422594 KEGG:gga:422594
InParanoid:Q5ZJV0 NextBio:20825204 Uniprot:Q5ZJV0
Length = 411
Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
Identities = 190/353 (53%), Positives = 251/353 (71%)
Query: 84 KFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 143
K F A+++++V LV+SRQLL F L L T KEI ++TL +IQPRV+SFEEQV
Sbjct: 51 KAFVEAMVNENVSLVISRQLLTDFCTHLPSLPDSTAKEIYHFTLEKIQPRVISFEEQVAS 110
Query: 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 203
IR+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V AE
Sbjct: 111 IRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAE 170
Query: 204 AFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 263
A+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 171 AYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSY---KSIVHES-- 225
Query: 264 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI 323
E LE AL A+ CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R ++
Sbjct: 226 -ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQL 283
Query: 324 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKI 383
FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEKI
Sbjct: 284 QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKI 343
Query: 384 ASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 436
AS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 344 ASQMITEGRMNGFIDQIDGIVHFET-REALPTWDKQIQSLCFQVNNLLEKISQ 395
>UNIPROTKB|E2RT55 [details] [associations]
symbol:COPS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008180 "signalosome" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 KO:K12178 OMA:YNELSYR
GeneTree:ENSGT00530000063471 EMBL:AAEX03016729
RefSeq:XP_003640149.1 ProteinModelPortal:E2RT55 SMR:E2RT55
PRIDE:E2RT55 Ensembl:ENSCAFT00000014418 GeneID:100856586
KEGG:cfa:100856586 NextBio:20853792 Uniprot:E2RT55
Length = 406
Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
Identities = 190/353 (53%), Positives = 251/353 (71%)
Query: 84 KFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 143
K F A+++++V LV+SRQLL F L L T KEI ++TL +IQPRV+SFEEQV
Sbjct: 46 KAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVAS 105
Query: 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 203
IR+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V AE
Sbjct: 106 IRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAE 165
Query: 204 AFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 263
A+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 166 AYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSY---KTIVHES-- 220
Query: 264 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI 323
E LE AL A+ CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R ++
Sbjct: 221 -ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQL 278
Query: 324 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKI 383
FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEKI
Sbjct: 279 QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKI 338
Query: 384 ASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 436
AS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 339 ASQMITEGRMNGFIDQIDGIVHFET-REALPTWDKQIQSLCFQVNNLLEKISQ 390
>UNIPROTKB|Q9BT78 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9606 "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008180 "signalosome" evidence=IDA] [GO:0010388 "cullin
deneddylation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471057 GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640
HOGENOM:HOG000158382 KO:K12178 CTD:51138 HOVERGEN:HBG051136
OrthoDB:EOG4MGS7F EMBL:AF100757 EMBL:AK001210 EMBL:AK024005
EMBL:BC004302 EMBL:BC009292 EMBL:BC093007 IPI:IPI00171844
RefSeq:NP_001244935.1 RefSeq:NP_057213.2 UniGene:Hs.190384
ProteinModelPortal:Q9BT78 SMR:Q9BT78 DIP:DIP-34516N IntAct:Q9BT78
MINT:MINT-1464138 STRING:Q9BT78 PhosphoSite:Q9BT78 DMDM:55976582
OGP:Q9BT78 REPRODUCTION-2DPAGE:IPI00171844 PaxDb:Q9BT78
PeptideAtlas:Q9BT78 PRIDE:Q9BT78 Ensembl:ENST00000264389
GeneID:51138 KEGG:hsa:51138 UCSC:uc003hoa.3 GeneCards:GC04P083955
HGNC:HGNC:16702 HPA:HPA036894 neXtProt:NX_Q9BT78 PharmGKB:PA26756
InParanoid:Q9BT78 PhylomeDB:Q9BT78 ChiTaRS:COPS4 GenomeRNAi:51138
NextBio:53990 ArrayExpress:Q9BT78 Bgee:Q9BT78 CleanEx:HS_COPS4
Genevestigator:Q9BT78 GermOnline:ENSG00000138663 Uniprot:Q9BT78
Length = 406
Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
Identities = 190/353 (53%), Positives = 251/353 (71%)
Query: 84 KFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 143
K F A+++++V LV+SRQLL F L L T KEI ++TL +IQPRV+SFEEQV
Sbjct: 46 KAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVAS 105
Query: 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 203
IR+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V AE
Sbjct: 106 IRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAE 165
Query: 204 AFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 263
A+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 166 AYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSY---KTIVHES-- 220
Query: 264 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI 323
E LE AL A+ CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R ++
Sbjct: 221 -ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQL 278
Query: 324 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKI 383
FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEKI
Sbjct: 279 QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKI 338
Query: 384 ASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 436
AS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 339 ASQMITEGRMNGFIDQIDGIVHFET-REALPTWDKQIQSLCFQVNNLLEKISQ 390
>UNIPROTKB|A7Y521 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9823 "Sus scrofa" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
OMA:YNELSYR CTD:51138 GeneTree:ENSGT00530000063471
HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F EMBL:EF635914
RefSeq:NP_001098774.1 UniGene:Ssc.5658 ProteinModelPortal:A7Y521
SMR:A7Y521 STRING:A7Y521 PRIDE:A7Y521 Ensembl:ENSSSCT00000010121
GeneID:100125960 KEGG:ssc:100125960 Uniprot:A7Y521
Length = 406
Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
Identities = 190/353 (53%), Positives = 251/353 (71%)
Query: 84 KFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 143
K F A+++++V LV+SRQLL F L L T KEI ++TL +IQPRV+SFEEQV
Sbjct: 46 KAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVAS 105
Query: 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 203
IR+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V AE
Sbjct: 106 IRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAE 165
Query: 204 AFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 263
A+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 166 AYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSY---KTIVHES-- 220
Query: 264 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI 323
E LE AL A+ CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R ++
Sbjct: 221 -ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQL 278
Query: 324 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKI 383
FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEKI
Sbjct: 279 QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKI 338
Query: 384 ASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 436
AS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 339 ASQMITEGRMNGFIDQIDGIVHFET-REALPTWDKQIQSLCFQVNNLLEKISQ 390
>MGI|MGI:1349414 [details] [associations]
symbol:Cops4 "COP9 (constitutive photomorphogenic) homolog,
subunit 4 (Arabidopsis thaliana)" species:10090 "Mus musculus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=ISO;IDA] [GO:0010388 "cullin deneddylation"
evidence=ISO] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
MGI:MGI:1349414 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382
KO:K12178 OMA:YNELSYR CTD:51138 HOVERGEN:HBG051136
OrthoDB:EOG4MGS7F EMBL:AF071314 EMBL:AK009955 IPI:IPI00131871
RefSeq:NP_036131.1 UniGene:Mm.957 PDB:1UFM PDBsum:1UFM
ProteinModelPortal:O88544 SMR:O88544 IntAct:O88544 STRING:O88544
PhosphoSite:O88544 REPRODUCTION-2DPAGE:O88544 PaxDb:O88544
PRIDE:O88544 Ensembl:ENSMUST00000045993 GeneID:26891 KEGG:mmu:26891
InParanoid:O88544 EvolutionaryTrace:O88544 NextBio:304719
Bgee:O88544 Genevestigator:O88544 GermOnline:ENSMUSG00000035297
Uniprot:O88544
Length = 406
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 189/353 (53%), Positives = 251/353 (71%)
Query: 84 KFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 143
K F A+++++V LV+SRQLL F L L T KE+ ++TL +IQPRV+SFEEQV
Sbjct: 46 KAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEVYHFTLEKIQPRVISFEEQVAS 105
Query: 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 203
IR+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V AE
Sbjct: 106 IRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAE 165
Query: 204 AFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 263
A+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 166 AYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSY---KTIVHES-- 220
Query: 264 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI 323
E LE AL A+ CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R ++
Sbjct: 221 -ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQL 278
Query: 324 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKI 383
FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEKI
Sbjct: 279 QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKI 338
Query: 384 ASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 436
AS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 339 ASQMITEGRMNGFIDQIDGIVHFET-REALPTWDKQIQSLCFQVNNLLEKISQ 390
>ZFIN|ZDB-GENE-030131-4317 [details] [associations]
symbol:cops4 "COP9 constitutive photomorphogenic
homolog subunit 4 (Arabidopsis)" species:7955 "Danio rerio"
[GO:0008150 "biological_process" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000717
InterPro:IPR011990 Pfam:PF01399 SMART:SM00088
ZFIN:ZDB-GENE-030131-4317 GO:GO:0005737 Gene3D:1.10.10.10
InterPro:IPR011991 Gene3D:1.25.40.10 GO:GO:0008180
HOGENOM:HOG000158382 KO:K12178 OMA:YNELSYR CTD:51138
GeneTree:ENSGT00530000063471 HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F
EMBL:BC056527 EMBL:BC065617 IPI:IPI00488179 RefSeq:NP_991119.1
UniGene:Dr.77245 ProteinModelPortal:Q6P0H6 SMR:Q6P0H6 STRING:Q6P0H6
PRIDE:Q6P0H6 Ensembl:ENSDART00000064215 GeneID:325592
KEGG:dre:325592 eggNOG:COG5071 InParanoid:Q6P0H6 NextBio:20809371
Bgee:Q6P0H6 Uniprot:Q6P0H6
Length = 406
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 188/353 (53%), Positives = 251/353 (71%)
Query: 84 KFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 143
K F A+++++V LV+SRQLL F L L + K + ++TL +IQPRV+SFEEQV
Sbjct: 46 KAFVEAMVNENVSLVISRQLLTDFCAHLPNLPDDIAKVVCHFTLEKIQPRVISFEEQVAS 105
Query: 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 203
IR+ LA +YE ++ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V AE
Sbjct: 106 IRQHLATIYEKQEDWRNAAQVLVGIPLETGQKQYNVDYKLDTYLKIARLYLEDDDPVQAE 165
Query: 204 AFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 263
A+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I ET
Sbjct: 166 AYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSY---KSIVHET-- 220
Query: 264 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI 323
E LE AL A+ CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R ++
Sbjct: 221 -ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQL 278
Query: 324 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKI 383
FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I P KAEKI
Sbjct: 279 QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPPAKAEKI 338
Query: 384 ASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 436
AS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 339 ASQMITEGRMNGFIDQIDGIVHFET-REPLPTWDKQIQSLCFQVNNLLEKISQ 390
>UNIPROTKB|Q3SZA0 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382
KO:K12178 OMA:YNELSYR EMBL:BC103017 IPI:IPI00700909
RefSeq:NP_001029866.1 UniGene:Bt.48928 ProteinModelPortal:Q3SZA0
SMR:Q3SZA0 STRING:Q3SZA0 PRIDE:Q3SZA0 Ensembl:ENSBTAT00000009128
GeneID:540223 KEGG:bta:540223 CTD:51138
GeneTree:ENSGT00530000063471 HOVERGEN:HBG051136 InParanoid:Q3SZA0
OrthoDB:EOG4MGS7F NextBio:20878499 Uniprot:Q3SZA0
Length = 406
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 189/353 (53%), Positives = 251/353 (71%)
Query: 84 KFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 143
K F ++++++V LV+SRQLL F L L T KEI ++TL +IQPRV+SFEEQV
Sbjct: 46 KAFVESMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVAS 105
Query: 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 203
IR+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V AE
Sbjct: 106 IRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAE 165
Query: 204 AFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 263
A+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 166 AYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSY---KTIVHES-- 220
Query: 264 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI 323
E LE AL A+ CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R ++
Sbjct: 221 -ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQL 278
Query: 324 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKI 383
FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEKI
Sbjct: 279 QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKI 338
Query: 384 ASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 436
AS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 339 ASQMITEGRMNGFIDQIDGIVHFET-REALPTWDKQIQSLCFQVNNLLEKISQ 390
>FB|FBgn0027054 [details] [associations]
symbol:CSN4 "COP9 complex homolog subunit 4" species:7227
"Drosophila melanogaster" [GO:0008180 "signalosome"
evidence=ISS;NAS;IMP;TAS;IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001751 "compound eye photoreceptor cell
differentiation" evidence=IMP] [GO:0000338 "protein deneddylation"
evidence=IMP] [GO:0019781 "NEDD8 activating enzyme activity"
evidence=IMP] [GO:0050821 "protein stabilization" evidence=IMP]
[GO:0032435 "negative regulation of proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0007095 "mitotic
G2 DNA damage checkpoint" evidence=IGI] [GO:0046331 "lateral
inhibition" evidence=IMP] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 EMBL:AE013599 GO:GO:0005737 GO:GO:0007095
GO:GO:0050821 GO:GO:0048477 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0044212 GO:GO:0046331 GO:GO:0008180 GO:GO:0001751
GO:GO:0032435 GO:GO:0000338 GO:GO:0019781 eggNOG:NOG298640
KO:K12178 OMA:YNELSYR GeneTree:ENSGT00530000063471 EMBL:AF129082
EMBL:BT004883 RefSeq:NP_001163080.1 RefSeq:NP_477444.1
UniGene:Dm.3377 ProteinModelPortal:Q9V345 SMR:Q9V345 IntAct:Q9V345
MINT:MINT-279079 STRING:Q9V345 PaxDb:Q9V345 PRIDE:Q9V345
EnsemblMetazoa:FBtr0088859 EnsemblMetazoa:FBtr0301230 GeneID:35759
KEGG:dme:Dmel_CG8725 CTD:35759 FlyBase:FBgn0027054
InParanoid:Q9V345 OrthoDB:EOG441NSS PhylomeDB:Q9V345
GenomeRNAi:35759 NextBio:795082 Bgee:Q9V345 GermOnline:CG8725
Uniprot:Q9V345
Length = 407
Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
Identities = 179/352 (50%), Positives = 244/352 (69%)
Query: 84 KFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 143
+ F A++++ V LV+SRQ+L EL +L + K ++++TL ++ PRV+SFEEQV
Sbjct: 53 RLFVEAIVNEHVSLVISRQILNDVGSELSKLPDDLSKMLSHFTLEKVNPRVISFEEQVAG 112
Query: 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 203
IR LA++YE QQW AA +L GI L++G + +L ++IARLYLED+D+V AE
Sbjct: 113 IRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVECKLGTYLKIARLYLEDNDSVQAE 172
Query: 204 AFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 263
FIN+AS L + + E L + YKVCYAR+LD +RKF+EAA RY ++S R+I +D
Sbjct: 173 LFINRASLLQAETNSEELQVLYKVCYARVLDYRRKFIEAAQRYNELSY---RKI----VD 225
Query: 264 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI 323
+ AL A+ CT+LA+AG QRSR+LATL+KDERC L Y IL+K+YLERI+R+ E+
Sbjct: 226 QGERMTALKKALICTVLASAGQQRSRMLATLFKDERCQHLPAYGILEKMYLERIIRRSEL 285
Query: 324 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKI 383
F L+ HQKA D ++LDRA+ EHNLLSASKLY NI+FEELG LL I KAEKI
Sbjct: 286 QEFEALLQDHQKAATSDGSSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKI 345
Query: 384 ASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMA 435
AS+MI E RM G IDQ+ A++HFE+ E L QWD+QI LC +N I++ ++
Sbjct: 346 ASQMITEGRMNGHIDQISAIVHFEN-RELLPQWDRQIQSLCYQVNSIIEKIS 396
>UNIPROTKB|D6RAX7 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 HOGENOM:HOG000158382 OMA:YNELSYR HGNC:HGNC:16702
ChiTaRS:COPS4 EMBL:AC021105 EMBL:AC073840 EMBL:AC108473
IPI:IPI00966770 ProteinModelPortal:D6RAX7 SMR:D6RAX7
Ensembl:ENST00000511653 ArrayExpress:D6RAX7 Bgee:D6RAX7
Uniprot:D6RAX7
Length = 420
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 180/324 (55%), Positives = 233/324 (71%)
Query: 84 KFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 143
K F A+++++V LV+SRQLL F L L T KEI ++TL +IQPRV+SFEEQV
Sbjct: 46 KAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVAS 105
Query: 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 203
IR+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V AE
Sbjct: 106 IRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAE 165
Query: 204 AFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 263
A+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 166 AYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSY---KTIVHES-- 220
Query: 264 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI 323
E LE AL A+ CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R ++
Sbjct: 221 -ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQL 278
Query: 324 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKI 383
FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEKI
Sbjct: 279 QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKI 338
Query: 384 ASRMIFEDRMRGSIDQVEAVIHFE 407
AS+MI E RM G IDQ++ ++HFE
Sbjct: 339 ASQMITEGRMNGFIDQIDGIVHFE 362
>ASPGD|ASPL0000047008 [details] [associations]
symbol:csnD species:162425 "Emericella nidulans"
[GO:0070791 "cleistothecium development" evidence=IMP] [GO:0008180
"signalosome" evidence=ISS;IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030448 "hyphal growth" evidence=IMP] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 EMBL:BN001307 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AACD01000025 GO:GO:0008180 eggNOG:NOG298640
HOGENOM:HOG000158382 KO:K12178 HSSP:O88544 EMBL:AF236662
RefSeq:XP_659143.1 ProteinModelPortal:Q9C467 STRING:Q9C467
EnsemblFungi:CADANIAT00008166 GeneID:2875265 KEGG:ani:AN1539.2
OMA:QARISDY OrthoDB:EOG4SR158 Uniprot:Q9C467
Length = 408
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 150/363 (41%), Positives = 235/363 (64%)
Query: 85 FFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLII 144
++ +VLS+D+ +V +R +L +F L +L ETQ ++A + + +Q R S EEQ I
Sbjct: 48 YYLDSVLSEDLSIVAARPILDSFIYTLRKLSSETQIKVAQHAVNLLQSRSASVEEQDAQI 107
Query: 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEA 204
RE LAD YE+E+++ AA+ L GI +DS R++ D+ ++ ++I RLYLE+DD +AEA
Sbjct: 108 REILADAYEAEEEYIAAARALQGIHIDSSQRLVSDSAKVKLWIRIVRLYLEEDDTTSAEA 167
Query: 205 FINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDE 264
F+N+ L S + L L +++ ARI D +R+FL+A+ Y+ +S G +DE
Sbjct: 168 FLNRIKNLPSKIEDHELKLHFRLSQARIQDARRRFLDASQEYFAVSLAA----G---VDE 220
Query: 265 EALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEID 324
QAL+AA+ C +LA AGPQRSR LATLYKD+R + ++ + IL+K++L+R+L E+
Sbjct: 221 SDRLQALAAAIRCAVLAPAGPQRSRTLATLYKDDRATSVEEFGILEKMFLDRLLTPEEVS 280
Query: 325 AFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI-------AP 377
AFA+ L PHQ A D TVLD+A++EHNL++ASKLY NI + LG +LG+ A
Sbjct: 281 AFAQRLAPHQLAQTADGTTVLDKAVVEHNLVAASKLYENIKTDALGAILGLQASGDLTAG 340
Query: 378 QKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDT----EELQQWDQQIVGLCQALNDILDS 433
+KAE A+RM+ + R+ GSIDQ++ +I+FE +T ++QWD + GL + + + +
Sbjct: 341 EKAEAYAARMVEQGRLSGSIDQIDGIIYFESNTTATGRHIRQWDAGVQGLSEGVERVATN 400
Query: 434 MAK 436
+A+
Sbjct: 401 IAE 403
>UNIPROTKB|D6RD63 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 HOGENOM:HOG000158382 HGNC:HGNC:16702
ChiTaRS:COPS4 EMBL:AC021105 EMBL:AC073840 EMBL:AC108473
IPI:IPI00966084 ProteinModelPortal:D6RD63 SMR:D6RD63
Ensembl:ENST00000509317 ArrayExpress:D6RD63 Bgee:D6RD63
Uniprot:D6RD63
Length = 275
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 148/273 (54%), Positives = 192/273 (70%)
Query: 162 AQML--SGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 219
AQ++ SG D + + ++L ++IARLYLEDDD V AEA+IN+AS L + S E
Sbjct: 10 AQLMNSSGSHKDLAGKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 69
Query: 220 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTI 279
L + YKVCYAR+LD +RKF+EAA RY ++S + I E+ E LE AL A+ CTI
Sbjct: 70 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSY---KTIVHES---ERLE-ALKHALHCTI 122
Query: 280 LAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLP 339
LA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R ++ FA L PHQKA
Sbjct: 123 LASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTA 182
Query: 340 DNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 399
D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEKIAS+MI E RM G IDQ
Sbjct: 183 DGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQ 242
Query: 400 VEAVIHFEDDTEELQQWDQQIVGLCQALNDILD 432
++ ++HFE E L WD+QI LC +N++L+
Sbjct: 243 IDGIVHFET-REALPTWDKQIQSLCFQVNNLLE 274
>UNIPROTKB|G4NCX3 [details] [associations]
symbol:MGG_00336 "COP9 signalosome complex subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
EMBL:CM001235 Gene3D:1.10.10.10 InterPro:IPR011991 KO:K12178
RefSeq:XP_003718747.1 ProteinModelPortal:G4NCX3 SMR:G4NCX3
EnsemblFungi:MGG_00336T0 GeneID:2675149 KEGG:mgr:MGG_00336
Uniprot:G4NCX3
Length = 420
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 131/323 (40%), Positives = 192/323 (59%)
Query: 89 AVLSDDVPLVVSRQLLQTFAQELGRLE-PETQKEIANYTLAQIQPRVV---SFEEQVLII 144
AVL+ + +V + +L F + +LE + E+ NY L +I SF EQ +
Sbjct: 49 AVLNAQLGVVSTLPILSAFVNAVRQLENDDLWIEVGNYALQRIGENTQTASSFLEQSNAL 108
Query: 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEA 204
RE +A +E + W+ AA+ L+ I LDS R + + ++I R YLE DD+ A +
Sbjct: 109 RELIATAHEHNEDWTDAAKTLAEIPLDSSQRRATEEEMVRVWIRIVRNYLEADDSTTAGS 168
Query: 205 FINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDE 264
++NK ++ Q LNL +++ ARI D +R+FL A+ Y++IS + + +E
Sbjct: 169 YLNKVKNVIFKVQDRDLNLHFRLSQARINDSQREFLAASHAYHEIS------LSPQIAEE 222
Query: 265 EALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEID 324
E L LS A+ C +LA AGP RSR L LY+DER + + Y IL+K++L+R+L E+D
Sbjct: 223 ERLH-TLSMAIKCAVLAPAGPLRSRALGRLYRDERSAGQEEYGILEKMFLDRLLSPGEVD 281
Query: 325 AFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIA 384
FA+ L PHQ A D TVL +A++EHNLL AS+LY NI F+ELG LLG+ KAE+
Sbjct: 282 KFAQGLSPHQLATTADGSTVLAKAVVEHNLLGASRLYDNIGFDELGELLGLDGAKAEETT 341
Query: 385 SRMIFEDRMRGSIDQVEAVIHFE 407
+RMI + R+ G IDQV+ VI FE
Sbjct: 342 ARMIEQGRLVGRIDQVDRVIWFE 364
>WB|WBGene00000816 [details] [associations]
symbol:csn-4 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0030154 GO:GO:0002119 GO:GO:0040011
GO:GO:0048477 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000910
GO:GO:0040035 GO:GO:0008180 eggNOG:NOG298640 HOGENOM:HOG000158382
KO:K12178 GeneTree:ENSGT00530000063471 EMBL:FO081813
RefSeq:NP_500034.1 ProteinModelPortal:Q9N359 SMR:Q9N359
DIP:DIP-27076N IntAct:Q9N359 MINT:MINT-1078091 STRING:Q9N359
PaxDb:Q9N359 PRIDE:Q9N359 EnsemblMetazoa:Y55F3AM.15.1
EnsemblMetazoa:Y55F3AM.15.2 GeneID:176927 KEGG:cel:CELE_Y55F3AM.15
UCSC:Y55F3AM.15 CTD:176927 WormBase:Y55F3AM.15 InParanoid:Q9N359
OMA:LCNKYLP NextBio:894618 Uniprot:Q9N359
Length = 412
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 126/364 (34%), Positives = 202/364 (55%)
Query: 82 IFKFFFCAVLSDDVPLVVSRQLLQTFAQELGR--LEPETQKEIANYTLAQIQPRVVSFEE 139
I K + + +VVSRQ + + L LE E K I+ LA I+ R +S+E+
Sbjct: 49 IIKIIDTVIALETGSMVVSRQFVSLITERLDNQHLESECVKAISEGILAIIKTRTISYED 108
Query: 140 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDS-----GMRVIDDTFRLSKCVQIARLYL 194
QV I+R LA LYE E + AAQ L I+ D+ G + + + C++I +L L
Sbjct: 109 QVCILRLMLASLYEKEGRIKDAAQALIAINSDTSPKFNGPQAAKEGAKAQLCIRITKLLL 168
Query: 195 EDDDAVNAEAFINKASFL-VSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 253
+ + AE ++N+ S L V + +++K AR+ D KR+F+EAA RYY++S +
Sbjct: 169 DCSEIDEAEQYVNRTSILMVDLGANPDIQIEHKALQARVSDAKRRFVEAAQRYYELSATE 228
Query: 254 KRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY 313
+ D+ AL A+ C +LA GPQRSR+L ++KDER K + ++ K+Y
Sbjct: 229 QLPNSDKLT-------ALGKAIVCVLLAKPGPQRSRLLTLIFKDERAPKCASFELIAKMY 281
Query: 314 LERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLL 373
L +++ K E++ F +L+ HQKA ++L + EHN+ + S+LY NISF+ LG LL
Sbjct: 282 LTKVIHKDELEEFEHQLQDHQKAD-EHGESILKGVIQEHNITAISQLYINISFKTLGQLL 340
Query: 374 GIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDS 433
G+ + AE +A MI +R+ G IDQ ++HFED + ++ WD QI+ + +N + D
Sbjct: 341 GVDTEAAESMAGEMISSERLHGYIDQTNGILHFED-SNPMRVWDSQILSTLEQINKVSDM 399
Query: 434 MAKK 437
+ +
Sbjct: 400 IVAR 403
>UNIPROTKB|Q9N359 [details] [associations]
symbol:csn-4 "COP9 signalosome complex subunit 4"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0030154
GO:GO:0002119 GO:GO:0040011 GO:GO:0048477 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000910 GO:GO:0040035 GO:GO:0008180
eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
GeneTree:ENSGT00530000063471 EMBL:FO081813 RefSeq:NP_500034.1
ProteinModelPortal:Q9N359 SMR:Q9N359 DIP:DIP-27076N IntAct:Q9N359
MINT:MINT-1078091 STRING:Q9N359 PaxDb:Q9N359 PRIDE:Q9N359
EnsemblMetazoa:Y55F3AM.15.1 EnsemblMetazoa:Y55F3AM.15.2
GeneID:176927 KEGG:cel:CELE_Y55F3AM.15 UCSC:Y55F3AM.15 CTD:176927
WormBase:Y55F3AM.15 InParanoid:Q9N359 OMA:LCNKYLP NextBio:894618
Uniprot:Q9N359
Length = 412
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 126/364 (34%), Positives = 202/364 (55%)
Query: 82 IFKFFFCAVLSDDVPLVVSRQLLQTFAQELGR--LEPETQKEIANYTLAQIQPRVVSFEE 139
I K + + +VVSRQ + + L LE E K I+ LA I+ R +S+E+
Sbjct: 49 IIKIIDTVIALETGSMVVSRQFVSLITERLDNQHLESECVKAISEGILAIIKTRTISYED 108
Query: 140 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDS-----GMRVIDDTFRLSKCVQIARLYL 194
QV I+R LA LYE E + AAQ L I+ D+ G + + + C++I +L L
Sbjct: 109 QVCILRLMLASLYEKEGRIKDAAQALIAINSDTSPKFNGPQAAKEGAKAQLCIRITKLLL 168
Query: 195 EDDDAVNAEAFINKASFL-VSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 253
+ + AE ++N+ S L V + +++K AR+ D KR+F+EAA RYY++S +
Sbjct: 169 DCSEIDEAEQYVNRTSILMVDLGANPDIQIEHKALQARVSDAKRRFVEAAQRYYELSATE 228
Query: 254 KRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY 313
+ D+ AL A+ C +LA GPQRSR+L ++KDER K + ++ K+Y
Sbjct: 229 QLPNSDKLT-------ALGKAIVCVLLAKPGPQRSRLLTLIFKDERAPKCASFELIAKMY 281
Query: 314 LERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLL 373
L +++ K E++ F +L+ HQKA ++L + EHN+ + S+LY NISF+ LG LL
Sbjct: 282 LTKVIHKDELEEFEHQLQDHQKAD-EHGESILKGVIQEHNITAISQLYINISFKTLGQLL 340
Query: 374 GIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDS 433
G+ + AE +A MI +R+ G IDQ ++HFED + ++ WD QI+ + +N + D
Sbjct: 341 GVDTEAAESMAGEMISSERLHGYIDQTNGILHFED-SNPMRVWDSQILSTLEQINKVSDM 399
Query: 434 MAKK 437
+ +
Sbjct: 400 IVAR 403
>POMBASE|SPAC22A12.03c [details] [associations]
symbol:csn4 "COP9/signalosome complex subunit Csn4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0008180
"signalosome" evidence=IEA] [GO:0010388 "cullin deneddylation"
evidence=NAS] InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399
SMART:SM00088 PomBase:SPAC22A12.03c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640
OrthoDB:EOG4SR158 PIR:T38143 RefSeq:NP_593233.1
ProteinModelPortal:O13895 IntAct:O13895 STRING:O13895
EnsemblFungi:SPAC22A12.03c.1 GeneID:2541517 KEGG:spo:SPAC22A12.03c
OMA:HEINEIA NextBio:20802615 Uniprot:O13895
Length = 377
Score = 190 (71.9 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 72/292 (24%), Positives = 131/292 (44%)
Query: 117 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV 176
E +KE+ + +Q + E ++ +LA +YE+EQ + L ++
Sbjct: 70 ELRKELISELYVPVQSLEEAPSEYLVSCCLQLATIYEAEQNFELLCSSLEAVEKHGHFEN 129
Query: 177 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLK 236
+ L + +++ YL+ A A + + L + L ++ ++C AR LD
Sbjct: 130 DLEQLLLLR-IRLGDAYLKLGKAEKAILTVRTSIPLAFKVSNDQLLMELQLCNARALDET 188
Query: 237 RKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 296
+FLEAA YY + +Q + G+E I E L + C +LA P + L +
Sbjct: 189 GQFLEAAKCYYRV--LQYKVPGNELIYRENL----CSVAQCLLLAIPSPIVLQFLQEISL 242
Query: 297 DERCSKLKIYPILQKVYLERILRKPEIDAFAEE-LKPHQKALLPDNFTVLD-RAMIEHNL 354
++ Y +++K YL+R E AF L PHQ ++ N + D R +E N+
Sbjct: 243 QPSVREIPFYSLVEK-YLKRKFIGKEDGAFLLPFLLPHQ--VIHMNRLIEDGRHFLETNI 299
Query: 355 LSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 406
L S+ + S L ++ ++ + + + M+ ++R+ SIDQ E I F
Sbjct: 300 LFLSEFFEVSSTSILAKHFKLSEEQVDTVVADMVIQERLNASIDQCEGYITF 351
Score = 40 (19.1 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 6 ASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHSYLSPSLSI 52
A A T++++ EQ K L+ SN+ + + S L ++SI
Sbjct: 21 ALALHYTNEKELFEQAKRCLNICCGSNNFAKRNDVL-FSLLDVAVSI 66
>RGD|1359305 [details] [associations]
symbol:Psmd12 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 12" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=IEA] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0022624 "proteasome
accessory complex" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 RGD:1359305
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000502
GeneTree:ENSGT00530000063471 eggNOG:COG5071 CTD:5718
HOGENOM:HOG000194265 HOVERGEN:HBG053739 KO:K03035 OMA:WDALNEN
OrthoDB:EOG46DM2P EMBL:BC083758 IPI:IPI00198978
RefSeq:NP_001005875.1 UniGene:Rn.15873 IntAct:Q5XIC6 STRING:Q5XIC6
Ensembl:ENSRNOT00000004283 GeneID:287772 KEGG:rno:287772
UCSC:RGD:1359305 InParanoid:Q5XIC6 NextBio:626983
Genevestigator:Q5XIC6 Uniprot:Q5XIC6
Length = 456
Score = 145 (56.1 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 67/332 (20%), Positives = 138/332 (41%)
Query: 126 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 185
TL + + E + + + LA + E +AA +L + +++ ++ R+
Sbjct: 127 TLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVET-YGSMEKKERVEF 185
Query: 186 CVQIARLYLEDDDAVNAEAFINKASF-LVSSSQQEVLNLQYKVCYARILDLKRKFLEAAL 244
++ RL L D + + K + E L L+Y ++ + +L
Sbjct: 186 ILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICK 245
Query: 245 RY---YDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCS 301
Y YD IQ + + +QAL + V ILA ++S ++ + D++
Sbjct: 246 HYRAIYDTPCIQA--------ESDKWQQALKSVVLYVILAPFDNEQSDLVHRISSDKKLE 297
Query: 302 KLKIYPILQKVY--LERILRKPEIDAFAEEL-KPHQKALLPDNFTV----------LDRA 348
++ Y L K++ +E + ++ + EL K + D F+ L
Sbjct: 298 EIPKYKDLLKLFTTMELMRWSTLVEDYGVELRKGSSETPATDVFSSTEEGEKRWKDLKNR 357
Query: 349 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE- 407
++EHN+ +K YT I+ + + LL ++ ++E S ++ + +D++ VI+F+
Sbjct: 358 VVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQR 417
Query: 408 --DDTEELQQWDQQIVGLCQALNDILDSMAKK 437
D L W Q++ L +N +AK+
Sbjct: 418 PKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKE 449
>TAIR|locus:2176100 [details] [associations]
symbol:RPN5B "AT5G64760" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IDA;TAS] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0030163 "protein catabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0042023
"DNA endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0051510
"regulation of unidimensional cell growth" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 EMBL:CP002688 Gene3D:1.10.10.10
InterPro:IPR011991 UniGene:At.27199 UniGene:At.71233 GO:GO:0030163
GO:GO:0000502 eggNOG:COG5071 KO:K03035 OMA:CDEKIPL EMBL:AY062093
EMBL:AY062113 EMBL:AY124872 EMBL:AY230833 IPI:IPI00543192
RefSeq:NP_568994.2 ProteinModelPortal:Q8VWK0 SMR:Q8VWK0
IntAct:Q8VWK0 STRING:Q8VWK0 PaxDb:Q8VWK0 PRIDE:Q8VWK0
EnsemblPlants:AT5G64760.1 GeneID:836597 KEGG:ath:AT5G64760
ProtClustDB:CLSN2687519 Genevestigator:Q8VWK0 Uniprot:Q8VWK0
Length = 442
Score = 146 (56.5 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 58/203 (28%), Positives = 96/203 (47%)
Query: 232 ILDLKRKFLEAALRYY----DISQIQK--RQIGDETIDEEALEQALSAA-VTCTILAAA- 283
+L LKR + E +RYY + +I + + I D +E EQ + C LA A
Sbjct: 209 LLVLKRIYYELMIRYYSHNNEYIEICRSYKAIYDIPSVKENPEQWIPVLRKICWFLALAP 268
Query: 284 -GPQRSRVLATLYKDERCSKLKIYPILQK--VYLERILRKPEIDAFAEELKPHQKAL--- 337
P +S +L +D++ S++ + +L K V +E I + + +E + + +
Sbjct: 269 HDPMQSSLLNATLEDKKLSEIPDFKMLLKQIVTMEVIQWTSLWNKYKDEFENEKNMIGGS 328
Query: 338 LPDNFTV-LDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 396
L D L +IEHN+L SK Y+ I+F+ L LL + ++AEK S M+ +
Sbjct: 329 LGDKAGEDLKLRIIEHNILVVSKYYSRITFKRLAELLCLTTEEAEKHLSEMVVSKALIAK 388
Query: 397 IDQVEAVIHFE---DDTEELQQW 416
ID+ +I F+ D E L W
Sbjct: 389 IDRPSGIICFQIVKDSNEILNSW 411
Score = 39 (18.8 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 139 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDD 198
EQ+L + +K L ++ Q + A LD R+ + + V ++Y+E +
Sbjct: 52 EQILNLSKKRGQLKQAVQSMVQQAMQYIDQTLDIETRI--ELIKTLNNVAAGKIYVEIER 109
Query: 199 A 199
A
Sbjct: 110 A 110
>MGI|MGI:1914247 [details] [associations]
symbol:Psmd12 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 12" species:10090 "Mus musculus" [GO:0000502
"proteasome complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0022624 "proteasome accessory complex"
evidence=IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
MGI:MGI:1914247 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CH466558
GeneTree:ENSGT00530000063471 eggNOG:COG5071 EMBL:AL645687
GO:GO:0022624 CTD:5718 HOGENOM:HOG000194265 HOVERGEN:HBG053739
KO:K03035 OMA:WDALNEN OrthoDB:EOG46DM2P EMBL:AK007619 EMBL:AK007680
EMBL:AK009969 EMBL:AK017843 EMBL:AK151242 EMBL:AL683815
EMBL:BC004694 IPI:IPI00318982 RefSeq:NP_080170.1 UniGene:Mm.21667
ProteinModelPortal:Q9D8W5 SMR:Q9D8W5 IntAct:Q9D8W5 STRING:Q9D8W5
PhosphoSite:Q9D8W5 PaxDb:Q9D8W5 PRIDE:Q9D8W5
Ensembl:ENSMUST00000021063 GeneID:66997 KEGG:mmu:66997
InParanoid:Q9CQT4 NextBio:323262 Bgee:Q9D8W5 Genevestigator:Q9D8W5
GermOnline:ENSMUSG00000020720 Uniprot:Q9D8W5
Length = 456
Score = 143 (55.4 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 66/332 (19%), Positives = 138/332 (41%)
Query: 126 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 185
TL + + E + + + LA + E +AA +L + +++ ++ R+
Sbjct: 127 TLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVET-YGSMEKKERVEF 185
Query: 186 CVQIARLYLEDDDAVNAEAFINKASF-LVSSSQQEVLNLQYKVCYARILDLKRKFLEAAL 244
++ RL L D + + K + E L L+Y ++ + +L
Sbjct: 186 ILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTENLKLKYYNLMIQLDQHEGSYLSICK 245
Query: 245 RY---YDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCS 301
Y YD IQ + + +QAL + V ILA ++S ++ + D++
Sbjct: 246 HYRAIYDTPCIQA--------ESDKWQQALKSVVLYVILAPFDNEQSDLVHRISSDKKLE 297
Query: 302 KLKIYPILQKVY--LERILRKPEIDAFAEEL-KPHQKALLPDNFTVLDRA---------- 348
++ Y L K++ +E + ++ + EL K + D F+ +
Sbjct: 298 EIPKYKDLLKLFTTMELMRWSTLVEDYGVELRKGSSETPATDVFSSTEEGEKRWKDLKSR 357
Query: 349 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE- 407
++EHN+ +K YT I+ + + LL ++ ++E S ++ + +D++ VI+F+
Sbjct: 358 VVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQR 417
Query: 408 --DDTEELQQWDQQIVGLCQALNDILDSMAKK 437
D L W Q++ L +N +AK+
Sbjct: 418 PKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKE 449
>DICTYBASE|DDB_G0281051 [details] [associations]
symbol:psmD12 "26S proteasome non-ATPase regulatory
subunit 12" species:44689 "Dictyostelium discoideum" [GO:0003674
"molecular_function" evidence=ND] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
dictyBase:DDB_G0281051 GenomeReviews:CM000152_GR EMBL:AAFI02000040
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006511 eggNOG:COG5071
GO:GO:0005838 KO:K03035 OMA:WDALNEN RefSeq:XP_640786.1
ProteinModelPortal:Q54UJ0 STRING:Q54UJ0 PRIDE:Q54UJ0
EnsemblProtists:DDB0232995 GeneID:8622839 KEGG:ddi:DDB_G0281051
ProtClustDB:CLSZ2729043 Uniprot:Q54UJ0
Length = 447
Score = 147 (56.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 69/314 (21%), Positives = 132/314 (42%)
Query: 126 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 185
TL I + E + + + L+ + E E + AA++L + +++ ++ +++
Sbjct: 128 TLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVET-YGTMEKREKITF 186
Query: 186 CVQIARLYLEDDDAVNAEAFINKASF-LVSSSQQEVLNLQYKVCYARILDLKRKFLEAAL 244
+ R+ + + D + A+ NK + ++ + + L + Y R ++E A
Sbjct: 187 FIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQDLKIDYFKQMIRYFSHSANYIEIAR 246
Query: 245 RY---YDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCS 301
Y YD ++K D L Q L IL+A+ ++S +L +Y+ + +
Sbjct: 247 CYLSIYDTPSVEK--------DTPQLLQTLKYICIYVILSASSNEQSDLLNRVYEFKPLT 298
Query: 302 KLKIYPILQKVY--LERI-------LRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEH 352
++ Y L + LE I L KPE+D+ K P+ + L + +IEH
Sbjct: 299 DIQNYKDLLNQFKTLELIRWSTFFELNKPELDS-QTVFKTE-----PNAWEDLRKRVIEH 352
Query: 353 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF---EDD 409
N+ S Y IS L LL ++ ++EK S ++ + ID+ + F D
Sbjct: 353 NIRVISTYYQKISTARLAELLDLSLDESEKFVSDLVSNKTIFAKIDRPAGIATFTTTNDP 412
Query: 410 TEELQQWDQQIVGL 423
+ L W I L
Sbjct: 413 NKVLNAWANNITSL 426
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 1 MESALASASAITDQRQKIE 19
++ ++ ITD +QK+E
Sbjct: 106 VQESMVYVDQITDMKQKLE 124
>UNIPROTKB|Q2KJ25 [details] [associations]
symbol:PSMD12 "26S proteasome non-ATPase regulatory subunit
12" species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00530000063471 eggNOG:COG5071 GO:GO:0022624
EMBL:BC105555 IPI:IPI00702341 RefSeq:NP_001039893.1
UniGene:Bt.59590 ProteinModelPortal:Q2KJ25 STRING:Q2KJ25
PRIDE:Q2KJ25 Ensembl:ENSBTAT00000003145 GeneID:538204
KEGG:bta:538204 CTD:5718 HOGENOM:HOG000194265 HOVERGEN:HBG053739
KO:K03035 OMA:WDALNEN NextBio:20877306 Uniprot:Q2KJ25
Length = 456
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 67/332 (20%), Positives = 138/332 (41%)
Query: 126 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 185
TL + + E + + + LA + E +AA +L + +++ ++ R+
Sbjct: 127 TLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVET-YGSMEKKERVEF 185
Query: 186 CVQIARLYLEDDDAVNAEAFINKASF-LVSSSQQEVLNLQYKVCYARILDLKRKFLEAAL 244
++ RL L D + + K + E L L+Y ++ + +L
Sbjct: 186 ILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICK 245
Query: 245 RY---YDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCS 301
Y YD IQ + E +QAL + V ILA ++S ++ + D++
Sbjct: 246 HYRAIYDTPCIQA--------ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLE 297
Query: 302 KLKIYPILQKVY--LERILRKPEIDAFAEEL-KPHQKALLPDNFTV----------LDRA 348
++ Y L K++ +E + ++ + EL K ++ D F L
Sbjct: 298 EIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGYTEEGEKRWKDLKNR 357
Query: 349 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE- 407
++EHN+ +K YT I+ + + LL ++ ++E S ++ + +D++ +I+F+
Sbjct: 358 VVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQR 417
Query: 408 --DDTEELQQWDQQIVGLCQALNDILDSMAKK 437
D L W Q++ L +N +AK+
Sbjct: 418 PKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKE 449
>UNIPROTKB|F1RSM2 [details] [associations]
symbol:PSMD12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10
InterPro:IPR011991 GeneTree:ENSGT00530000063471 KO:K03035
OMA:WDALNEN EMBL:CU466377 RefSeq:XP_003483009.1
Ensembl:ENSSSCT00000018803 GeneID:100524394 KEGG:ssc:100524394
Uniprot:F1RSM2
Length = 456
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 67/332 (20%), Positives = 138/332 (41%)
Query: 126 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 185
TL + + E + + + LA + E +AA +L + +++ ++ R+
Sbjct: 127 TLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVET-YGSMEKKERVEF 185
Query: 186 CVQIARLYLEDDDAVNAEAFINKASF-LVSSSQQEVLNLQYKVCYARILDLKRKFLEAAL 244
++ RL L D + + K + E L L+Y ++ + +L
Sbjct: 186 ILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICK 245
Query: 245 RY---YDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCS 301
Y YD IQ + E +QAL + V ILA ++S ++ + D++
Sbjct: 246 HYRAIYDTPCIQA--------ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLE 297
Query: 302 KLKIYPILQKVY--LERILRKPEIDAFAEEL-KPHQKALLPDNFTV----------LDRA 348
++ Y L K++ +E + ++ + EL K ++ D F L
Sbjct: 298 EIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGYTEEGEKRWKDLKNR 357
Query: 349 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE- 407
++EHN+ +K YT I+ + + LL ++ ++E S ++ + +D++ +I+F+
Sbjct: 358 VVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQR 417
Query: 408 --DDTEELQQWDQQIVGLCQALNDILDSMAKK 437
D L W Q++ L +N +AK+
Sbjct: 418 PKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKE 449
>UNIPROTKB|O00232 [details] [associations]
symbol:PSMD12 "26S proteasome non-ATPase regulatory subunit
12" species:9606 "Homo sapiens" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005838 "proteasome regulatory particle"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005829 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0044281
GO:GO:0000082 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0051436
EMBL:CH471099 GO:GO:0000216 GO:GO:0000209 GO:GO:0000084
GO:GO:0031145 GO:GO:0051437 GO:GO:0006521 Reactome:REACT_383
eggNOG:COG5071 GO:GO:0005838 CTD:5718 HOGENOM:HOG000194265
HOVERGEN:HBG053739 KO:K03035 OMA:WDALNEN EMBL:AB003103
EMBL:AK091198 EMBL:AK222679 EMBL:AC110921 EMBL:BC019062
EMBL:BC065826 IPI:IPI00185374 IPI:IPI00335069 PIR:PC6501
RefSeq:NP_002807.1 RefSeq:NP_777360.1 UniGene:Hs.592689
ProteinModelPortal:O00232 SMR:O00232 DIP:DIP-27549N IntAct:O00232
MINT:MINT-5003729 STRING:O00232 PhosphoSite:O00232 PaxDb:O00232
PeptideAtlas:O00232 PRIDE:O00232 DNASU:5718 Ensembl:ENST00000356126
Ensembl:ENST00000357146 GeneID:5718 KEGG:hsa:5718 UCSC:uc002jfy.3
GeneCards:GC17M065334 HGNC:HGNC:9557 HPA:HPA023119 MIM:604450
neXtProt:NX_O00232 PharmGKB:PA33903 InParanoid:O00232
OrthoDB:EOG46DM2P PhylomeDB:O00232 GenomeRNAi:5718 NextBio:22216
ArrayExpress:O00232 Bgee:O00232 CleanEx:HS_PSMD12
Genevestigator:O00232 GermOnline:ENSG00000197170 Uniprot:O00232
Length = 456
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 67/332 (20%), Positives = 138/332 (41%)
Query: 126 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 185
TL + + E + + + LA + E +AA +L + +++ ++ R+
Sbjct: 127 TLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVET-YGSMEKKERVEF 185
Query: 186 CVQIARLYLEDDDAVNAEAFINKASF-LVSSSQQEVLNLQYKVCYARILDLKRKFLEAAL 244
++ RL L D + + K + E L L+Y ++ + +L
Sbjct: 186 ILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICK 245
Query: 245 RY---YDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCS 301
Y YD IQ + E +QAL + V ILA ++S ++ + D++
Sbjct: 246 HYRAIYDTPCIQA--------ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLE 297
Query: 302 KLKIYPILQKVY--LERILRKPEIDAFAEEL-KPHQKALLPDNFTV----------LDRA 348
++ Y L K++ +E + ++ + EL K ++ D F L
Sbjct: 298 EIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNR 357
Query: 349 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE- 407
++EHN+ +K YT I+ + + LL ++ ++E S ++ + +D++ +I+F+
Sbjct: 358 VVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQR 417
Query: 408 --DDTEELQQWDQQIVGLCQALNDILDSMAKK 437
D L W Q++ L +N +AK+
Sbjct: 418 PKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKE 449
>UNIPROTKB|Q5RBI3 [details] [associations]
symbol:PSMD12 "26S proteasome non-ATPase regulatory subunit
12" species:9601 "Pongo abelii" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0022624
CTD:5718 HOVERGEN:HBG053739 KO:K03035 EMBL:CR858665
RefSeq:NP_001125501.1 UniGene:Pab.487 ProteinModelPortal:Q5RBI3
PRIDE:Q5RBI3 GeneID:100172410 KEGG:pon:100172410 InParanoid:Q5RBI3
Uniprot:Q5RBI3
Length = 456
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 67/332 (20%), Positives = 138/332 (41%)
Query: 126 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 185
TL + + E + + + LA + E +AA +L + +++ ++ R+
Sbjct: 127 TLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVET-YGSMEKKERVEF 185
Query: 186 CVQIARLYLEDDDAVNAEAFINKASF-LVSSSQQEVLNLQYKVCYARILDLKRKFLEAAL 244
++ RL L D + + K + E L L+Y ++ + +L
Sbjct: 186 ILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICK 245
Query: 245 RY---YDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCS 301
Y YD IQ + E +QAL + V ILA ++S ++ + D++
Sbjct: 246 HYRAIYDTPCIQA--------ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLE 297
Query: 302 KLKIYPILQKVY--LERILRKPEIDAFAEEL-KPHQKALLPDNFTV----------LDRA 348
++ Y L K++ +E + ++ + EL K ++ D F L
Sbjct: 298 EIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNR 357
Query: 349 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE- 407
++EHN+ +K YT I+ + + LL ++ ++E S ++ + +D++ +I+F+
Sbjct: 358 VVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQR 417
Query: 408 --DDTEELQQWDQQIVGLCQALNDILDSMAKK 437
D L W Q++ L +N +AK+
Sbjct: 418 PKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKE 449
>POMBASE|SPAC1420.03 [details] [associations]
symbol:rpn501 "19S proteasome regulatory subunit Rpn501"
species:4896 "Schizosaccharomyces pombe" [GO:0000502 "proteasome
complex" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IC] [GO:0031144
"proteasome localization" evidence=IGI] [GO:0034399 "nuclear
periphery" evidence=IDA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IGI]
[GO:0043248 "proteasome assembly" evidence=IGI] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 PomBase:SPAPB8E5.02c PomBase:SPAC1420.03
GO:GO:0005829 GO:GO:0007346 GO:GO:0005635 EMBL:CU329670
GO:GO:0043161 GenomeReviews:CU329670_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000502 GO:GO:0043248 GO:GO:0034399
GO:GO:0031144 HOGENOM:HOG000194265 KO:K03035 EMBL:U97377 PIR:T37666
RefSeq:NP_593278.1 RefSeq:NP_594776.1 ProteinModelPortal:Q9UTM3
STRING:Q9UTM3 PRIDE:Q9UTM3 EnsemblFungi:SPAC1420.03.1
EnsemblFungi:SPAPB8E5.02c.1 GeneID:2542907 GeneID:2543347
KEGG:spo:SPAC1420.03 KEGG:spo:SPAPB8E5.02c OMA:CDEKIPL
OrthoDB:EOG41G6CN NextBio:20803946 Uniprot:Q9UTM3
Length = 443
Score = 140 (54.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 53/253 (20%), Positives = 112/253 (44%)
Query: 205 FINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALR-------YYDISQIQKRQI 257
F+ ++ + ++S+ + +N+++ + LK K+ E +R Y D+ + R +
Sbjct: 181 FLLRSDYYMASTYTKKINVKFFE-KEDVQSLKLKYYEQKIRIGLHDDAYLDVCKYY-RAV 238
Query: 258 GDETI---DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYL 314
D + D E ++ L V +L +++ +L + D + + L + L K ++
Sbjct: 239 YDTAVVQEDPEKWKEILENVVCFALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFI 298
Query: 315 -ERILRKPEI-DAFAEELKPHQKALLPDN-----FTVLDRAMIEHNLLSASKLYTNISFE 367
++R P+I + + L+ + D ++ L + +IEHN+ + Y+ I
Sbjct: 299 VNELMRWPKIAEIYGSALRSNPVFAENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCS 358
Query: 368 ELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDT---EELQQWDQQIVGLC 424
LG LL ++P + E+ +I + ID+ VI F+ E+L +W I L
Sbjct: 359 RLGVLLDMSPSETEQFLCDLIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGSNITELL 418
Query: 425 QALNDILDSMAKK 437
L + + K+
Sbjct: 419 GKLEKVRQLIIKE 431
>POMBASE|SPAPB8E5.02c [details] [associations]
symbol:rpn502 "19S proteasome regulatory subunit
Rpn502" species:4896 "Schizosaccharomyces pombe" [GO:0000502
"proteasome complex" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IC] [GO:0031144 "proteasome localization" evidence=IGI]
[GO:0034399 "nuclear periphery" evidence=IDA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IGI] [GO:0043248 "proteasome assembly" evidence=IGI]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 PomBase:SPAPB8E5.02c
PomBase:SPAC1420.03 GO:GO:0005829 GO:GO:0007346 GO:GO:0005635
EMBL:CU329670 GO:GO:0043161 GenomeReviews:CU329670_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000502 GO:GO:0043248
GO:GO:0034399 GO:GO:0031144 HOGENOM:HOG000194265 KO:K03035
EMBL:U97377 PIR:T37666 RefSeq:NP_593278.1 RefSeq:NP_594776.1
ProteinModelPortal:Q9UTM3 STRING:Q9UTM3 PRIDE:Q9UTM3
EnsemblFungi:SPAC1420.03.1 EnsemblFungi:SPAPB8E5.02c.1
GeneID:2542907 GeneID:2543347 KEGG:spo:SPAC1420.03
KEGG:spo:SPAPB8E5.02c OMA:CDEKIPL OrthoDB:EOG41G6CN
NextBio:20803946 Uniprot:Q9UTM3
Length = 443
Score = 140 (54.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 53/253 (20%), Positives = 112/253 (44%)
Query: 205 FINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALR-------YYDISQIQKRQI 257
F+ ++ + ++S+ + +N+++ + LK K+ E +R Y D+ + R +
Sbjct: 181 FLLRSDYYMASTYTKKINVKFFE-KEDVQSLKLKYYEQKIRIGLHDDAYLDVCKYY-RAV 238
Query: 258 GDETI---DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYL 314
D + D E ++ L V +L +++ +L + D + + L + L K ++
Sbjct: 239 YDTAVVQEDPEKWKEILENVVCFALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFI 298
Query: 315 -ERILRKPEI-DAFAEELKPHQKALLPDN-----FTVLDRAMIEHNLLSASKLYTNISFE 367
++R P+I + + L+ + D ++ L + +IEHN+ + Y+ I
Sbjct: 299 VNELMRWPKIAEIYGSALRSNPVFAENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCS 358
Query: 368 ELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDT---EELQQWDQQIVGLC 424
LG LL ++P + E+ +I + ID+ VI F+ E+L +W I L
Sbjct: 359 RLGVLLDMSPSETEQFLCDLIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGSNITELL 418
Query: 425 QALNDILDSMAKK 437
L + + K+
Sbjct: 419 GKLEKVRQLIIKE 431
>ZFIN|ZDB-GENE-030131-617 [details] [associations]
symbol:psmd12 "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 12" species:7955 "Danio rerio" [GO:0000502
"proteasome complex" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 ZFIN:ZDB-GENE-030131-617 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000502 GeneTree:ENSGT00530000063471
CTD:5718 HOVERGEN:HBG053739 KO:K03035 OMA:WDALNEN EMBL:CR759902
EMBL:BC042325 IPI:IPI00511230 RefSeq:NP_963872.1 UniGene:Dr.51730
STRING:Q8AW07 Ensembl:ENSDART00000126186 GeneID:321898
KEGG:dre:321898 InParanoid:Q8AW07 NextBio:20807575 Uniprot:Q8AW07
Length = 456
Score = 140 (54.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 77/363 (21%), Positives = 155/363 (42%)
Query: 97 LVVSRQLLQTFAQ-ELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESE 155
L + +L+ T G++ E ++ TLA I+ + +E I++E + Y S
Sbjct: 118 LSIKLRLIDTLRTVTAGKIYVEIERARLTKTLAHIKEQSGDVKEAAAILQELQVETYGSM 177
Query: 156 QQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 215
++ KA +L + RL C+ + + Y+ ++ + IN F
Sbjct: 178 EKKEKAEFIL-------------EQMRL--CIAV-KDYIRTQ-IISKK--INTKFFQEEG 218
Query: 216 SQQEVLNLQYKVCYARILDLKR-KFLEAALRY---YDISQIQKRQIGDETIDEEALEQAL 271
+++ L L+Y ++ DL +L Y YD I + D +QAL
Sbjct: 219 TEE--LKLKYYNLMIQV-DLHEGSYLSICKHYRAIYDTPCILE--------DSSKWQQAL 267
Query: 272 SAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY--LERILRKPEIDAFAEE 329
+ V ILA ++S ++ + D++ ++ Y L K + +E + ++ + +E
Sbjct: 268 KSVVLYVILAPYDNEQSDLVHRISTDKKLEEIPKYRDLLKQFTTMELMRWSSVVEDYGKE 327
Query: 330 LKPHQKALLPDN--FTV----------LDRAMIEHNLLSASKLYTNISFEELGTLLGIAP 377
L+ PD FT L ++EHN+ +K YT+I+ + LL ++
Sbjct: 328 LREGSMGT-PDTDVFTCTEEGEKRWKDLKNRVVEHNIRIMAKYYTSITMGRMAALLDLSV 386
Query: 378 QKAEKIASRMIFEDRMRGSIDQVEAVIHFE---DDTEELQQWDQQIVGLCQALNDILDSM 434
++E+ S ++ + +D++ +I+F+ D + L W Q++ L +N +
Sbjct: 387 DESEEFLSNLVVNKTIYAKVDRLAGIINFQRPKDPNDLLNDWSQKLNSLMSLVNKTTHLI 446
Query: 435 AKK 437
AK+
Sbjct: 447 AKE 449
>UNIPROTKB|F1NPQ0 [details] [associations]
symbol:LOC100859465 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0022624 "proteasome accessory complex"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
Gene3D:1.10.10.10 InterPro:IPR011991 GeneTree:ENSGT00530000063471
KO:K03035 OMA:WDALNEN EMBL:AADN02030024 IPI:IPI00589463
RefSeq:XP_003642387.1 Ensembl:ENSGALT00000005864 GeneID:100859465
KEGG:gga:100859465 Uniprot:F1NPQ0
Length = 456
Score = 138 (53.6 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 64/332 (19%), Positives = 139/332 (41%)
Query: 126 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 185
TL + + E + + + LA + E + +AA +L + +++ ++ R+
Sbjct: 127 TLRTVTEGKIYVEIERARLTKTLATIKEQNGEVKEAASILQELQVET-YGSMEKKERVEF 185
Query: 186 CVQIARLYLEDDDAVNAEAFINKASF-LVSSSQQEVLNLQYKVCYARILDLKRKFLEAAL 244
++ RL L D + + K + E L L+Y ++ + +L
Sbjct: 186 ILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICK 245
Query: 245 RY---YDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCS 301
Y YD IQ + E +QAL + V IL+ ++S ++ + D++
Sbjct: 246 HYRAIYDTPCIQA--------ESEKWQQALKSVVLYVILSPYDNEQSDLVHRISSDKKLE 297
Query: 302 KLKIYPILQKVY--LERILRKPEIDAFAEELKPHQ-KALLPDNFTV----------LDRA 348
++ Y L K++ +E + ++ + +EL+ + D F L
Sbjct: 298 EIPKYKDLLKLFTTMELMRWTALVEEYGKELREGSLDSPATDVFGCTEEGEKRWKDLKNR 357
Query: 349 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE- 407
++EHN+ +K YT I+ + + LL ++ ++E+ S ++ + +D++ +I+F+
Sbjct: 358 VVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEEFLSNLVVNKTIFAKVDRLAGIINFQR 417
Query: 408 --DDTEELQQWDQQIVGLCQALNDILDSMAKK 437
D L W ++ L +N +AK+
Sbjct: 418 PKDPNNILNDWSHKLNSLMALVNKTTHLIAKE 449
>ASPGD|ASPL0000076235 [details] [associations]
symbol:AN4775 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0043248
"proteasome assembly" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0031144 "proteasome localization" evidence=IEA] [GO:0010388
"cullin deneddylation" evidence=IEA] [GO:0008541 "proteasome
regulatory particle, lid subcomplex" evidence=IEA] [GO:0034399
"nuclear periphery" evidence=IEA] [GO:0008180 "signalosome"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0034515 "proteasome storage granule" evidence=IEA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000502 EMBL:BN001303 EMBL:AACD01000081
eggNOG:COG5071 HOGENOM:HOG000194265 KO:K03035 OrthoDB:EOG41G6CN
RefSeq:XP_662379.1 ProteinModelPortal:Q5B3V5 STRING:Q5B3V5
EnsemblFungi:CADANIAT00005647 GeneID:2872576 KEGG:ani:AN4775.2
OMA:ILANHDY Uniprot:Q5B3V5
Length = 487
Score = 136 (52.9 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 50/218 (22%), Positives = 102/218 (46%)
Query: 245 RYYDISQIQKRQIGDETIDE--EALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 302
+Y D+ + + + +++ E E L L+ V +L+ ++S +L + +D R S
Sbjct: 262 KYLDVCKHYREVLDTDSVQENPEQLRAVLARIVYYIVLSPYDNEQSDLLHRIQQDTRLSA 321
Query: 303 LKIYPILQKVY-LERILRKPEI-DAFAEEL--------KPHQKAL-LP-DNFTVLDRAMI 350
+ + L K++ + ++R P + + F L KP Q A P + L + +I
Sbjct: 322 VPVESRLVKLFTVPELMRWPIVAEQFGPHLCNTDVFSPKPSQSAEDRPYRRWQDLRKRVI 381
Query: 351 EHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF---E 407
EHN+ +K YT I L LL + ++ EK S ++ + ID+ +++F
Sbjct: 382 EHNVRVVAKYYTRIEMGRLTQLLDLTEEETEKYISELVTSKTIYAKIDRPARLVNFAKPR 441
Query: 408 DDTEELQQWD---QQIVGLCQALNDIL--DSMAKKGLP 440
D + L +W + ++GL + ++ ++ + M + LP
Sbjct: 442 DADDVLNEWSSDMRSLLGLLERIDHLITKEEMMARILP 479
>SGD|S000002306 [details] [associations]
symbol:RPN5 "Subunit of the CSN and 26S proteasome lid
complexes" species:4932 "Saccharomyces cerevisiae" [GO:0008541
"proteasome regulatory particle, lid subcomplex" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0010388 "cullin deneddylation" evidence=IMP] [GO:0008180
"signalosome" evidence=IDA] [GO:0034515 "proteasome storage
granule" evidence=IDA] [GO:0000502 "proteasome complex"
evidence=IEA;IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
SGD:S000002306 EMBL:BK006938 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008541 GO:GO:0006511 GO:GO:0008180 EMBL:X97751 GO:GO:0010388
GeneTree:ENSGT00530000063471 eggNOG:COG5071 GO:GO:0034515 PDB:4B4T
PDBsum:4B4T HOGENOM:HOG000194265 KO:K03035 OMA:WDALNEN
OrthoDB:EOG41G6CN EMBL:Z74195 PIR:S67695 RefSeq:NP_010134.1
ProteinModelPortal:Q12250 SMR:Q12250 DIP:DIP-1578N IntAct:Q12250
MINT:MINT-391026 STRING:Q12250 PaxDb:Q12250 PeptideAtlas:Q12250
EnsemblFungi:YDL147W GeneID:851408 KEGG:sce:YDL147W NextBio:968585
Genevestigator:Q12250 GermOnline:YDL147W Uniprot:Q12250
Length = 445
Score = 134 (52.2 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 67/325 (20%), Positives = 142/325 (43%)
Query: 126 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDS--GMRVIDDTFRL 183
T+ + + E + + + L ++ + E + +AA +L + +++ M + + +
Sbjct: 121 TIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFI 180
Query: 184 SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAA 243
+ ++++ L + A I K +F + + E L L+Y +I KR++LE A
Sbjct: 181 LEQMELSILKGDYSQATVLSRKILKKTF--KNPKYESLKLEYYNLLVKISLHKREYLEVA 238
Query: 244 LRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKL 303
+I Q + DE + LS V +L+ G ++ ++ + D KL
Sbjct: 239 QYLQEIYQTDAIKS-----DEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKL 293
Query: 304 -------KIY--------PILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRA 348
K++ PI+QK Y E +L + ++ AF E H ++ L +
Sbjct: 294 ESQESLVKLFTTNELMRWPIVQKTY-EPVLNEDDL-AFGGEANKH-------HWEDLQKR 344
Query: 349 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE- 407
+IEHNL S+ Y+ I+ L LL + + E S ++ + + +++ +++FE
Sbjct: 345 VIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEK 404
Query: 408 --DDTEELQQWDQQIVGLCQALNDI 430
+ ++ L +W + L + + I
Sbjct: 405 PKNSSQLLNEWSHNVDELLEHIETI 429
>WB|WBGene00004462 [details] [associations]
symbol:rpn-6.1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0006915
GO:GO:0006950 GO:GO:0002119 GO:GO:0000003 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043248 GO:GO:0006511 EMBL:FO081266
InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159
GeneTree:ENSGT00530000063301 GO:GO:0022624 PIR:H88493
RefSeq:NP_001022621.1 RefSeq:NP_001022622.1
ProteinModelPortal:Q20938 SMR:Q20938 STRING:Q20938 PaxDb:Q20938
PRIDE:Q20938 EnsemblMetazoa:F57B9.10a GeneID:175972
KEGG:cel:CELE_F57B9.10 UCSC:F57B9.10a CTD:175972 WormBase:F57B9.10a
WormBase:F57B9.10b HOGENOM:HOG000210093 InParanoid:Q20938 KO:K03036
OMA:SGILDQG NextBio:890556 Uniprot:Q20938
Length = 438
Score = 131 (51.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 70/310 (22%), Positives = 140/310 (45%)
Query: 136 SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKC-VQIARLYL 194
+F Q L R L LY Q++++A + + DL ++ +DD L + ++ ++ Y
Sbjct: 138 TFLRQTLTAR--LVRLYNDLQRYTQALPLAA--DLIRELKKVDDKDVLVEVELEESKAYY 193
Query: 195 EDDDAVNAEAFINKA-----SFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDI 249
+ A A + A + V+ Q L+LQ + +A D ++ F A +Y+
Sbjct: 194 NLSNIGRARASLTGARTTANAIYVNPRMQAALDLQSGILHAA--D-EKDFKTAFSYFYEA 250
Query: 250 SQIQKRQIGDETIDEEALE-QALSAAVTCTILAAAGPQRSRVL-ATLYKDERCSKLKIYP 307
+ G +++DE+ AL + C ++ + + +L A L S L
Sbjct: 251 FE------GYDSVDEKVSALTALKYMLLCKVMLDLPDEVNSLLSAKLALKYNGSDLDAMK 304
Query: 308 ILQKVYLERILRKPEI--DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNIS 365
+ +R L+ ++ +F +EL+ ++ +F L M+E +L + Y+ +
Sbjct: 305 AIAAAAQKRSLKDFQVAFGSFPQELQ--MDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQ 362
Query: 366 FEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV-IHFEDDTEELQQWDQQIVGLC 424
E + +GI K EK S+MI + ++ GS+DQ E + I FE + + Q +
Sbjct: 363 IEHVAQQIGIDRSKVEKKLSQMILDQKLSGSLDQGEGMLIVFEIAVPD--EAYQTALDTI 420
Query: 425 QALNDILDSM 434
A+ +++D++
Sbjct: 421 HAMGEVVDAL 430
>UNIPROTKB|Q20938 [details] [associations]
symbol:rpn-6.1 "Probable 26S proteasome regulatory subunit
rpn-6.1" species:6239 "Caenorhabditis elegans" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IDA]
[GO:0043248 "proteasome assembly" evidence=IDA] [GO:0006950
"response to stress" evidence=IDA] [GO:0022624 "proteasome
accessory complex" evidence=TAS] [GO:0008340 "determination of
adult lifespan" evidence=IDA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005634 GO:GO:0008340 GO:GO:0009792
GO:GO:0006915 GO:GO:0006950 GO:GO:0002119 GO:GO:0000003
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0043248 GO:GO:0006511
EMBL:FO081266 InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159
GeneTree:ENSGT00530000063301 GO:GO:0022624 PIR:H88493
RefSeq:NP_001022621.1 RefSeq:NP_001022622.1
ProteinModelPortal:Q20938 SMR:Q20938 STRING:Q20938 PaxDb:Q20938
PRIDE:Q20938 EnsemblMetazoa:F57B9.10a GeneID:175972
KEGG:cel:CELE_F57B9.10 UCSC:F57B9.10a CTD:175972 WormBase:F57B9.10a
WormBase:F57B9.10b HOGENOM:HOG000210093 InParanoid:Q20938 KO:K03036
OMA:SGILDQG NextBio:890556 Uniprot:Q20938
Length = 438
Score = 131 (51.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 70/310 (22%), Positives = 140/310 (45%)
Query: 136 SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKC-VQIARLYL 194
+F Q L R L LY Q++++A + + DL ++ +DD L + ++ ++ Y
Sbjct: 138 TFLRQTLTAR--LVRLYNDLQRYTQALPLAA--DLIRELKKVDDKDVLVEVELEESKAYY 193
Query: 195 EDDDAVNAEAFINKA-----SFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDI 249
+ A A + A + V+ Q L+LQ + +A D ++ F A +Y+
Sbjct: 194 NLSNIGRARASLTGARTTANAIYVNPRMQAALDLQSGILHAA--D-EKDFKTAFSYFYEA 250
Query: 250 SQIQKRQIGDETIDEEALE-QALSAAVTCTILAAAGPQRSRVL-ATLYKDERCSKLKIYP 307
+ G +++DE+ AL + C ++ + + +L A L S L
Sbjct: 251 FE------GYDSVDEKVSALTALKYMLLCKVMLDLPDEVNSLLSAKLALKYNGSDLDAMK 304
Query: 308 ILQKVYLERILRKPEI--DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNIS 365
+ +R L+ ++ +F +EL+ ++ +F L M+E +L + Y+ +
Sbjct: 305 AIAAAAQKRSLKDFQVAFGSFPQELQ--MDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQ 362
Query: 366 FEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV-IHFEDDTEELQQWDQQIVGLC 424
E + +GI K EK S+MI + ++ GS+DQ E + I FE + + Q +
Sbjct: 363 IEHVAQQIGIDRSKVEKKLSQMILDQKLSGSLDQGEGMLIVFEIAVPD--EAYQTALDTI 420
Query: 425 QALNDILDSM 434
A+ +++D++
Sbjct: 421 HAMGEVVDAL 430
>ASPGD|ASPL0000014128 [details] [associations]
symbol:AN10519 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000717
InterPro:IPR011990 Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:BN001302 Gene3D:1.25.40.10 GO:GO:0000502
InterPro:IPR013143 SMART:SM00753 HOGENOM:HOG000210093 OMA:SGILDQG
EnsemblFungi:CADANIAT00004435 Uniprot:C8V4A5
Length = 424
Score = 130 (50.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 71/339 (20%), Positives = 151/339 (44%)
Query: 101 RQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSK 160
RQLL F++ L+ + + A + R SF Q L R L ++ +Q +
Sbjct: 91 RQLLDLFSEIPNTLDIQIAVIRSCIEWAVAERR--SFLRQNLETR--LVAIFMQKQSYYD 146
Query: 161 AAQMLSGIDLDSGMRVIDDTFRLSKCVQI--ARLYLEDDDAVNAEAFINKASFLVSSSQQ 218
A +++ + + ++ +DD L + VQ+ +R+Y + A A + A +S
Sbjct: 147 ALNLINSLLRE--LKRLDDKLMLVE-VQLLESRVYHALGNQAKARAALTAARTSAASVYT 203
Query: 219 EVLNLQYKV-CYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDE-EALEQALSAAVT 276
NLQ + + +L + K + Y+ I ++ G ++DE E AL +
Sbjct: 204 PP-NLQAGLDMQSGMLHAEDKDFNTSYSYF-IEALE----GYSSLDEGEKATAALQYMLL 257
Query: 277 CTILAAAGPQRSRVLATLYKDERCS-KLKIYPILQKVYLERILRKPEIDAFAEELKPHQK 335
C I+ + +L + + S +L+ + + + R L + E +
Sbjct: 258 CKIMLNLVDDVTTLLGSKQAQKYASPRLEAMKAVARAHANRSLEEYEKALSDYRFELGSD 317
Query: 336 ALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 395
A + ++ L AM+E NL+ + ++ + + + ++G+ Q+ E+ S+MI + + G
Sbjct: 318 AFIRNHLRRLYDAMLEQNLIKVIEPFSRVELDHIAKMVGLDTQQVERKLSQMILDKVIIG 377
Query: 396 SIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSM 434
+DQ + D+TE Q +D + + + L+++++S+
Sbjct: 378 VLDQGAGCLIVYDETERDQAYDAALETIAR-LSNVVESL 415
>CGD|CAL0003109 [details] [associations]
symbol:RPN6 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=IEA] [GO:0034515 "proteasome
storage granule" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043248 "proteasome assembly"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] InterPro:IPR000717 InterPro:IPR011990
Pfam:PF01399 SMART:SM00088 CGD:CAL0003109 Gene3D:1.10.10.10
InterPro:IPR011991 Gene3D:1.25.40.10 InterPro:IPR013143
SMART:SM00753 EMBL:AACQ01000138 KO:K03036 RefSeq:XP_709940.1
ProteinModelPortal:Q59TR9 STRING:Q59TR9 GeneID:3645352
KEGG:cal:CaO19.1299 Uniprot:Q59TR9
Length = 435
Score = 125 (49.1 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 69/347 (19%), Positives = 157/347 (45%)
Query: 102 QLLQTFAQELGRLEPETQKEI---ANYTLAQIQPRV---VSFEEQVLIIREKLADLYESE 155
++++T ++ +L + +K + + T + +Q + +SF Q L + KL+DL +
Sbjct: 97 KIVKTLIEDFDKLSAKDEKSLDIQIDVTKSSMQWAIESKLSFLRQSLQL--KLSDLLYQK 154
Query: 156 QQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQI--ARLYLEDDDAVNAEAFINKASFLV 213
+ +A ++++ +L + +DD L + VQ+ +++Y + A+A + A
Sbjct: 155 KHHHEAIKIIN--ELLREYKKLDDKSSLVE-VQLLESKIYHALRNIPKAKAALTSARTSA 211
Query: 214 SSSQQEVLNLQYKV-CYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALS 272
+S + LQ ++ C + IL+ + K + A Y+ + D+ L+ L
Sbjct: 212 NSIYCPTI-LQAELDCQSGILNSEDKDYKTAFSYF-YESFEGFNSQDDPRSIIVLKYMLL 269
Query: 273 AAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPE--IDAFAEEL 330
+ ++ + YK + +K + Y R L++ E + +A EL
Sbjct: 270 TKIMLNLIDDVNNILNNKNVIKYKSKDIDAMKS---IAMAYSNRSLKEFENSLLTYANEL 326
Query: 331 KPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFE 390
K A++ ++F L ++E NLL + Y+ + + ++G+ Q+ E S+MI +
Sbjct: 327 K--SDAIIKNHFNALYDNLLEQNLLKIIESYSCVELSHISKVIGLNLQQVEGKLSQMILD 384
Query: 391 DRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKK 437
G +DQ + D+ + ++ + L + L++++D + +K
Sbjct: 385 KVFYGVLDQGNGWLIIYDEPRKDAAYEASLE-LVKNLSNVVDLLYEK 430
>UNIPROTKB|G4NAA5 [details] [associations]
symbol:MGG_03211 "26S proteasome non-ATPase regulatory
subunit 11" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0000502 EMBL:CM001234 InterPro:IPR013143
SMART:SM00753 KO:K03036 RefSeq:XP_003716769.1
EnsemblFungi:MGG_03211T0 GeneID:2676755 KEGG:mgr:MGG_03211
Uniprot:G4NAA5
Length = 423
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 59/295 (20%), Positives = 134/295 (45%)
Query: 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQI--ARLYLEDDDAVN 201
+ +L L+ ++Q + +A +++G+ + ++ +DD L + VQ+ +R+Y +
Sbjct: 129 LETRLVTLHMAKQSYYEALTLINGLLKE--LKRLDDKLMLVE-VQLLESRVYHALGNISK 185
Query: 202 AEAFINKASFLVSSSQQEVLNLQYKV-CYARILDLKRKFLEAALRYYDISQIQKRQIGDE 260
A A + A +S + LQ + + +L + K A Y+ I + D
Sbjct: 186 ARAALTSARTSAASVYTPPM-LQANLDMQSGMLHAEDKDFNTAFSYF-IEALDGYHSQDA 243
Query: 261 TIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK-LKIYPILQKVYLERILR 319
T + A AL + C I+ + ++A+ + + L+ + + + R L
Sbjct: 244 TKNATA---ALQYMLLCKIMLNLVDDVNTLMASKQAAKYAGQSLEAMKAIARAHANRSLE 300
Query: 320 KPE--IDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAP 377
+ E + A+ EL A + + L AM+E NL+ + ++ + + + ++G+
Sbjct: 301 EYEQSLAAYRHELGGD--AFVRSHLRRLYDAMLEQNLIKVIEPFSRVEIDHIAKMVGLDT 358
Query: 378 QKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILD 432
Q+ E+ S+MI + + G +DQ + D+T+ + +D + + + L+ ++D
Sbjct: 359 QQVERKLSQMILDKVIIGVLDQGAGCLIIFDETQRDEAYDHALATI-EKLSSVVD 412
>UNIPROTKB|P68359 [details] [associations]
symbol:CSN4 "COP9 signalosome complex subunit 4"
species:3712 "Brassica oleracea" [GO:0005515 "protein binding"
evidence=IPI] GO:GO:0007275 GO:GO:0005737 GO:GO:0009585
GO:GO:0008180 IntAct:P68359 Uniprot:P68359
Length = 45
Score = 96 (38.9 bits), Expect = 0.00046, P = 0.00046
Identities = 22/27 (81%), Positives = 23/27 (85%)
Query: 334 QKALLPDNFTVLDRAMIEHN-LLSASK 359
+KA LPD TVLDRAMIEHN LLSASK
Sbjct: 19 KKAYLPDKSTVLDRAMIEHNNLLSASK 45
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 443 443 0.00090 118 3 11 22 0.50 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 38
No. of states in DFA: 598 (64 KB)
Total size of DFA: 241 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.97u 0.61s 42.58t Elapsed: 00:00:02
Total cpu time: 41.98u 0.61s 42.59t Elapsed: 00:00:02
Start: Tue May 21 01:55:40 2013 End: Tue May 21 01:55:42 2013