BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013430
(443 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4
PE=1 SV=2
Length = 397
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/443 (76%), Positives = 369/443 (83%), Gaps = 46/443 (10%)
Query: 1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHSYLSPSLSIFLIKNFRL 60
M+ AL +ASAI DQRQKIEQYK ILSSV+SSND++QA++FIDH
Sbjct: 1 MDEALTNASAIGDQRQKIEQYKLILSSVLSSNDLLQAQRFIDH----------------- 43
Query: 61 GFFEIHYFGRKQIFVRPYPFSIFKFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQK 120
+LSDDVPLVVSRQLLQ+FAQELGRLEPETQK
Sbjct: 44 -----------------------------ILSDDVPLVVSRQLLQSFAQELGRLEPETQK 74
Query: 121 EIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT 180
EIA +TL QIQPRVVSFEEQ L+IREKLA LYESEQ+WSKAAQMLSGIDLDSGMR +DD
Sbjct: 75 EIAQFTLTQIQPRVVSFEEQALVIREKLAGLYESEQEWSKAAQMLSGIDLDSGMRAVDDN 134
Query: 181 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFL 240
F+LSKC+QIARLYLEDDDAVNAEAFINKASFLVS+SQ EVLNLQYKVCYARILD+KRKFL
Sbjct: 135 FKLSKCIQIARLYLEDDDAVNAEAFINKASFLVSNSQNEVLNLQYKVCYARILDMKRKFL 194
Query: 241 EAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERC 300
EAALRYY ISQI++RQIGDE IDE ALEQALSAAVTCTILA AGPQRSRVLATLYKDERC
Sbjct: 195 EAALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERC 254
Query: 301 SKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKL 360
SKLKIYPILQKVYLERILR+PEIDAF+EEL+PHQKA LPD TVLDRAMIEHNLLSASKL
Sbjct: 255 SKLKIYPILQKVYLERILRRPEIDAFSEELRPHQKASLPDKSTVLDRAMIEHNLLSASKL 314
Query: 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQI 420
YTNI F+ELGTLL I P+KAEKIA+ MI +DRMRGSIDQ EAVIHFEDD EELQQWDQQI
Sbjct: 315 YTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGSIDQEEAVIHFEDDVEELQQWDQQI 374
Query: 421 VGLCQALNDILDSMAKKGLPIPV 443
GLCQALNDILD MAKKG+ +PV
Sbjct: 375 SGLCQALNDILDGMAKKGMSVPV 397
>sp|A7Y521|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1
Length = 406
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 189/356 (53%), Positives = 250/356 (70%), Gaps = 8/356 (2%)
Query: 83 FKFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 142
K F A+++++V LV+SRQLL F L L T KEI ++TL +IQPRV+SFEEQV
Sbjct: 45 LKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVA 104
Query: 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNA 202
IR+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V A
Sbjct: 105 SIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQA 164
Query: 203 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETI 262
EA+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 165 EAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELS---YKTIVHESE 221
Query: 263 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPE 322
EAL+ AL CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R +
Sbjct: 222 RLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQ 277
Query: 323 IDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEK 382
+ FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEK
Sbjct: 278 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEK 337
Query: 383 IASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKG 438
IAS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 338 IASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQTA 392
>sp|Q4R5E6|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4
PE=2 SV=1
Length = 406
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 189/356 (53%), Positives = 250/356 (70%), Gaps = 8/356 (2%)
Query: 83 FKFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 142
K F A+++++V LV+SRQLL F L L T KEI ++TL +IQPRV+SFEEQV
Sbjct: 45 LKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVA 104
Query: 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNA 202
IR+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V A
Sbjct: 105 SIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQA 164
Query: 203 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETI 262
EA+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 165 EAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELS---YKTIVHESE 221
Query: 263 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPE 322
EAL+ AL CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R +
Sbjct: 222 RLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQ 277
Query: 323 IDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEK 382
+ FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEK
Sbjct: 278 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEK 337
Query: 383 IASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKG 438
IAS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 338 IASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQTA 392
>sp|Q9BT78|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1
SV=1
Length = 406
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 189/356 (53%), Positives = 250/356 (70%), Gaps = 8/356 (2%)
Query: 83 FKFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 142
K F A+++++V LV+SRQLL F L L T KEI ++TL +IQPRV+SFEEQV
Sbjct: 45 LKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVA 104
Query: 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNA 202
IR+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V A
Sbjct: 105 SIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQA 164
Query: 203 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETI 262
EA+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 165 EAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELS---YKTIVHESE 221
Query: 263 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPE 322
EAL+ AL CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R +
Sbjct: 222 RLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQ 277
Query: 323 IDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEK 382
+ FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEK
Sbjct: 278 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEK 337
Query: 383 IASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKG 438
IAS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 338 IASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQTA 392
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4
PE=2 SV=1
Length = 406
Score = 362 bits (928), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 187/356 (52%), Positives = 251/356 (70%), Gaps = 8/356 (2%)
Query: 83 FKFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 142
K F A+++++V LV+SRQLL F L L T KE+ ++TL ++QPRV+SFEEQV
Sbjct: 45 LKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEVYHFTLEKVQPRVISFEEQVA 104
Query: 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNA 202
IR++LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V A
Sbjct: 105 SIRQRLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQA 164
Query: 203 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETI 262
EA+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 165 EAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELS---YKTIVHESE 221
Query: 263 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPE 322
EAL+ AL CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R +
Sbjct: 222 RLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQ 277
Query: 323 IDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEK 382
+ FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEK
Sbjct: 278 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEK 337
Query: 383 IASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKG 438
IAS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 338 IASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQTA 392
>sp|Q5R648|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2
SV=1
Length = 406
Score = 362 bits (928), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 188/356 (52%), Positives = 250/356 (70%), Gaps = 8/356 (2%)
Query: 83 FKFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 142
K F A+++++V LV+SRQLL F L L T KEI ++TL +IQPRV+SFEEQV
Sbjct: 45 LKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVA 104
Query: 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNA 202
+R+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V A
Sbjct: 105 SVRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQA 164
Query: 203 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETI 262
EA+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 165 EAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELS---YKTIVHESE 221
Query: 263 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPE 322
EAL+ AL CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R +
Sbjct: 222 RLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQ 277
Query: 323 IDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEK 382
+ FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEK
Sbjct: 278 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEK 337
Query: 383 IASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKG 438
IAS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 338 IASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQTA 392
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1
SV=1
Length = 406
Score = 362 bits (928), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 188/356 (52%), Positives = 250/356 (70%), Gaps = 8/356 (2%)
Query: 83 FKFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 142
K F A+++++V LV+SRQLL F L L T KE+ ++TL +IQPRV+SFEEQV
Sbjct: 45 LKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEVYHFTLEKIQPRVISFEEQVA 104
Query: 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNA 202
IR+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V A
Sbjct: 105 SIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQA 164
Query: 203 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETI 262
EA+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 165 EAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELS---YKTIVHESE 221
Query: 263 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPE 322
EAL+ AL CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R +
Sbjct: 222 RLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQ 277
Query: 323 IDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEK 382
+ FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEK
Sbjct: 278 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEK 337
Query: 383 IASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKG 438
IAS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 338 IASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQTA 392
>sp|Q3SZA0|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1
Length = 406
Score = 360 bits (925), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 188/356 (52%), Positives = 250/356 (70%), Gaps = 8/356 (2%)
Query: 83 FKFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 142
K F ++++++V LV+SRQLL F L L T KEI ++TL +IQPRV+SFEEQV
Sbjct: 45 LKAFVESMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVA 104
Query: 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNA 202
IR+ LA +YE E+ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V A
Sbjct: 105 SIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQA 164
Query: 203 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETI 262
EA+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I E+
Sbjct: 165 EAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELS---YKTIVHESE 221
Query: 263 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPE 322
EAL+ AL CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R +
Sbjct: 222 RLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQ 277
Query: 323 IDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEK 382
+ FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEK
Sbjct: 278 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEK 337
Query: 383 IASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKG 438
IAS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 338 IASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQTA 392
>sp|Q6P0H6|CSN4_DANRE COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2
SV=1
Length = 406
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 187/356 (52%), Positives = 250/356 (70%), Gaps = 8/356 (2%)
Query: 83 FKFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 142
K F A+++++V LV+SRQLL F L L + K + ++TL +IQPRV+SFEEQV
Sbjct: 45 LKAFVEAMVNENVSLVISRQLLTDFCAHLPNLPDDIAKVVCHFTLEKIQPRVISFEEQVA 104
Query: 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNA 202
IR+ LA +YE ++ W AAQ+L GI L++G + + ++L ++IARLYLEDDD V A
Sbjct: 105 SIRQHLATIYEKQEDWRNAAQVLVGIPLETGQKQYNVDYKLDTYLKIARLYLEDDDPVQA 164
Query: 203 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETI 262
EA+IN+AS L + S E L + YKVCYAR+LD +RKF+EAA RY ++S + I ET
Sbjct: 165 EAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELS---YKSIVHETE 221
Query: 263 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPE 322
EAL+ AL CTILA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R +
Sbjct: 222 RLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQ 277
Query: 323 IDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEK 382
+ FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+FEELG LL I P KAEK
Sbjct: 278 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPPAKAEK 337
Query: 383 IASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKG 438
IAS+MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +++
Sbjct: 338 IASQMITEGRMNGFIDQIDGIVHFE-TREPLPTWDKQIQSLCFQVNNLLEKISQTA 392
>sp|Q54B82|CSN4_DICDI COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum
GN=csn4 PE=2 SV=1
Length = 393
Score = 348 bits (894), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 193/437 (44%), Positives = 270/437 (61%), Gaps = 56/437 (12%)
Query: 1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHSYLSPSLSIFLIKNFRL 60
++ L SA++D + K E+YK IL ++ S + K FI H
Sbjct: 6 LKQILEETSALSDHKTKTEKYKSILQQLVESKQVAPLKVFITH----------------- 48
Query: 61 GFFEIHYFGRKQIFVRPYPFSIFKFFFCAVLSDD-VPLVVSRQLLQTFAQELGRLEPETQ 119
L+D+ PLV+SR +L +F L + Q
Sbjct: 49 ------------------------------LTDESTPLVISRTILLSFTSSHKTLPEDIQ 78
Query: 120 KEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD 179
E+ + L +IQ RVV+FEEQV IR LA LYE ++ W ++A+ L I LDS RVI
Sbjct: 79 MELGIFVLDRIQNRVVAFEEQVSEIRYNLAKLYERQENWRESARCLIAIPLDSSQRVISP 138
Query: 180 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKF 239
+++ V+IARL+LE++++ AE +IN+AS + + + L L +K C+ARI+D KR F
Sbjct: 139 EYKVKIYVKIARLFLEEEESGQAETYINRASDSLHLVKNQKLILAHKTCFARIMDYKRMF 198
Query: 240 LEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDER 299
L+A+LRYYD+SQ + D E + ALS A+ C IL AGPQRSR LATLYKDER
Sbjct: 199 LKASLRYYDLSQCLPK-------DTERM-HALSCAIVCAILDKAGPQRSRTLATLYKDER 250
Query: 300 CSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASK 359
+L +Y L+K++LERIL+K E+ FAE+LKPHQ ALL D TVLDRA+IEHNLLSASK
Sbjct: 251 SQQLGVYTFLEKMFLERILKKTEVKKFAEQLKPHQMALLSDGNTVLDRAVIEHNLLSASK 310
Query: 360 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQ 419
LY NI+F+ELG+LL I +KAEK+AS+M+ E+R+ GSIDQ+E +I FE+ + L QWD++
Sbjct: 311 LYNNITFDELGSLLEIQAEKAEKVASKMVCEERLIGSIDQIERLIQFENVGDSLTQWDKK 370
Query: 420 IVGLCQALNDILDSMAK 436
I GLC +N+I++S++K
Sbjct: 371 IEGLCIHMNNIIESISK 387
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster
GN=CSN4 PE=1 SV=1
Length = 407
Score = 346 bits (887), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 179/353 (50%), Positives = 244/353 (69%), Gaps = 8/353 (2%)
Query: 83 FKFFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 142
+ F A++++ V LV+SRQ+L EL +L + K ++++TL ++ PRV+SFEEQV
Sbjct: 52 LRLFVEAIVNEHVSLVISRQILNDVGSELSKLPDDLSKMLSHFTLEKVNPRVISFEEQVA 111
Query: 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNA 202
IR LA++YE QQW AA +L GI L++G + +L ++IARLYLED+D+V A
Sbjct: 112 GIRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVECKLGTYLKIARLYLEDNDSVQA 171
Query: 203 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETI 262
E FIN+AS L + + E L + YKVCYAR+LD +RKF+EAA RY ++S R+I +
Sbjct: 172 ELFINRASLLQAETNSEELQVLYKVCYARVLDYRRKFIEAAQRYNELSY---RKI----V 224
Query: 263 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPE 322
D+ AL A+ CT+LA+AG QRSR+LATL+KDERC L Y IL+K+YLERI+R+ E
Sbjct: 225 DQGERMTALKKALICTVLASAGQQRSRMLATLFKDERCQHLPAYGILEKMYLERIIRRSE 284
Query: 323 IDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEK 382
+ F L+ HQKA D ++LDRA+ EHNLLSASKLY NI+FEELG LL I KAEK
Sbjct: 285 LQEFEALLQDHQKAATSDGSSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEK 344
Query: 383 IASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMA 435
IAS+MI E RM G IDQ+ A++HFE + E L QWD+QI LC +N I++ ++
Sbjct: 345 IASQMITEGRMNGHIDQISAIVHFE-NRELLPQWDRQIQSLCYQVNSIIEKIS 396
>sp|Q9C467|CSN4_EMENI COP9 signalosome complex subunit 4 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnD PE=1 SV=2
Length = 408
Score = 271 bits (694), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 235/366 (64%), Gaps = 18/366 (4%)
Query: 85 FFFCAVLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLII 144
++ +VLS+D+ +V +R +L +F L +L ETQ ++A + + +Q R S EEQ I
Sbjct: 48 YYLDSVLSEDLSIVAARPILDSFIYTLRKLSSETQIKVAQHAVNLLQSRSASVEEQDAQI 107
Query: 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEA 204
RE LAD YE+E+++ AA+ L GI +DS R++ D+ ++ ++I RLYLE+DD +AEA
Sbjct: 108 REILADAYEAEEEYIAAARALQGIHIDSSQRLVSDSAKVKLWIRIVRLYLEEDDTTSAEA 167
Query: 205 FINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDE 264
F+N+ L S + L L +++ ARI D +R+FL+A+ Y+ +S +DE
Sbjct: 168 FLNRIKNLPSKIEDHELKLHFRLSQARIQDARRRFLDASQEYFAVSLAAG-------VDE 220
Query: 265 EALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEID 324
QAL+AA+ C +LA AGPQRSR LATLYKD+R + ++ + IL+K++L+R+L E+
Sbjct: 221 SDRLQALAAAIRCAVLAPAGPQRSRTLATLYKDDRATSVEEFGILEKMFLDRLLTPEEVS 280
Query: 325 AFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI-------AP 377
AFA+ L PHQ A D TVLD+A++EHNL++ASKLY NI + LG +LG+ A
Sbjct: 281 AFAQRLAPHQLAQTADGTTVLDKAVVEHNLVAASKLYENIKTDALGAILGLQASGDLTAG 340
Query: 378 QKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDT----EELQQWDQQIVGLCQALNDILDS 433
+KAE A+RM+ + R+ GSIDQ++ +I+FE +T ++QWD + GL + + + +
Sbjct: 341 EKAEAYAARMVEQGRLSGSIDQIDGIIYFESNTTATGRHIRQWDAGVQGLSEGVERVATN 400
Query: 434 MAKKGL 439
+A+ L
Sbjct: 401 IAEGHL 406
>sp|Q7S0P8|CSN4_NEUCR COP9 signalosome complex subunit 4 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-4 PE=1 SV=1
Length = 440
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 176/277 (63%), Gaps = 10/277 (3%)
Query: 138 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDD 197
++ I E LA +ES+ ++ AA+ L+ I LDS R + D ++ ++I R YLEDD
Sbjct: 117 DQTATIYEELLAAAHESQNSFTDAAKTLAAIPLDSSQRRVTDKYKADLWIRIIRNYLEDD 176
Query: 198 DAVNAEAFINKASFLVS--SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKR 255
DA +AE ++NK ++ + VLNL +K+ ARI D R+FL A+ YY+IS
Sbjct: 177 DATSAETYLNKLKNIIHNVADDNPVLNLHFKLSAARIQDSNRQFLAASQSYYEISL---- 232
Query: 256 QIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLE 315
I EE LS A+ C +LA AGP RSRVLA LYKDER + L+ + IL+K++L+
Sbjct: 233 ---SPAIAEEERLHTLSMAIKCAVLAPAGPPRSRVLARLYKDERSASLEEFGILEKMFLD 289
Query: 316 RILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI 375
R+L + E++ FA+ L PHQ A D TVL +AM+EHNLL+ S+LY NI F+ LG+ LG+
Sbjct: 290 RLLARAEVEKFAQGLAPHQLATTSDGSTVLAKAMVEHNLLAVSRLYRNIGFDALGSWLGL 349
Query: 376 -APQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTE 411
+ KAE+I +RMI + R+ GSIDQ++ +I+FE E
Sbjct: 350 DSGNKAEEITARMIEQGRLAGSIDQIDRIIYFESGLE 386
>sp|Q9N359|CSN4_CAEEL COP9 signalosome complex subunit 4 OS=Caenorhabditis elegans
GN=csn-4 PE=1 SV=1
Length = 412
Score = 212 bits (540), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 200/359 (55%), Gaps = 17/359 (4%)
Query: 82 IFKFFFCAVLSDDVPLVVSRQLLQTFAQELG--RLEPETQKEIANYTLAQIQPRVVSFEE 139
I K + + +VVSRQ + + L LE E K I+ LA I+ R +S+E+
Sbjct: 49 IIKIIDTVIALETGSMVVSRQFVSLITERLDNQHLESECVKAISEGILAIIKTRTISYED 108
Query: 140 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDS-----GMRVIDDTFRLSKCVQIARLYL 194
QV I+R LA LYE E + AAQ L I+ D+ G + + + C++I +L L
Sbjct: 109 QVCILRLMLASLYEKEGRIKDAAQALIAINSDTSPKFNGPQAAKEGAKAQLCIRITKLLL 168
Query: 195 EDDDAVNAEAFINKASFL-VSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 253
+ + AE ++N+ S L V + +++K AR+ D KR+F+EAA RYY++S +
Sbjct: 169 DCSEIDEAEQYVNRTSILMVDLGANPDIQIEHKALQARVSDAKRRFVEAAQRYYELSATE 228
Query: 254 KRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY 313
+ D+ AL A+ C +LA GPQRSR+L ++KDER K + ++ K+Y
Sbjct: 229 QLPNSDKLT-------ALGKAIVCVLLAKPGPQRSRLLTLIFKDERAPKCASFELIAKMY 281
Query: 314 LERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLL 373
L +++ K E++ F +L+ HQKA ++L + EHN+ + S+LY NISF+ LG LL
Sbjct: 282 LTKVIHKDELEEFEHQLQDHQKA-DEHGESILKGVIQEHNITAISQLYINISFKTLGQLL 340
Query: 374 GIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILD 432
G+ + AE +A MI +R+ G IDQ ++HFE D+ ++ WD QI+ + +N + D
Sbjct: 341 GVDTEAAESMAGEMISSERLHGYIDQTNGILHFE-DSNPMRVWDSQILSTLEQINKVSD 398
>sp|O13895|CSN4_SCHPO COP9 signalosome complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn4 PE=1 SV=1
Length = 377
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 123/265 (46%), Gaps = 18/265 (6%)
Query: 147 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFI 206
+LA +YE+EQ + L ++ + L + +++ YL+ A A +
Sbjct: 100 QLATIYEAEQNFELLCSSLEAVEKHGHFENDLEQLLLLR-IRLGDAYLKLGKAEKAILTV 158
Query: 207 NKA---SFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 263
+ +F VS+ Q L ++ ++C AR LD +FLEAA YY + +Q + G+E I
Sbjct: 159 RTSIPLAFKVSNDQ---LLMELQLCNARALDETGQFLEAAKCYYRV--LQYKVPGNELIY 213
Query: 264 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI 323
E L + C +LA P + L + ++ Y +++K YL+R E
Sbjct: 214 RE----NLCSVAQCLLLAIPSPIVLQFLQEISLQPSVREIPFYSLVEK-YLKRKFIGKED 268
Query: 324 DAFAEE-LKPHQKALLPDNFTVLD-RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAE 381
AF L PHQ ++ N + D R +E N+L S+ + S L ++ ++ +
Sbjct: 269 GAFLLPFLLPHQ--VIHMNRLIEDGRHFLETNILFLSEFFEVSSTSILAKHFKLSEEQVD 326
Query: 382 KIASRMIFEDRMRGSIDQVEAVIHF 406
+ + M+ ++R+ SIDQ E I F
Sbjct: 327 TVVADMVIQERLNASIDQCEGYITF 351
>sp|Q54UJ0|PSD12_DICDI 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium
discoideum GN=psmD12 PE=2 SV=1
Length = 447
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 133/317 (41%), Gaps = 37/317 (11%)
Query: 126 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 185
TL I + E + + + L+ + E E + AA++L + +++ ++ +++
Sbjct: 128 TLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVET-YGTMEKREKITF 186
Query: 186 CVQIARLYLEDDDAVNAEAFINKASF-LVSSSQQEVLNLQYKVCYARILDLKRKFLEAA- 243
+ R+ + + D + A+ NK + ++ + + L + Y R ++E A
Sbjct: 187 FIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQDLKIDYFKQMIRYFSHSANYIEIAR 246
Query: 244 --LRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCS 301
L YD ++K D L Q L IL+A+ ++S +L +Y+ + +
Sbjct: 247 CYLSIYDTPSVEK--------DTPQLLQTLKYICIYVILSASSNEQSDLLNRVYEFKPLT 298
Query: 302 KLKIYPILQKVY--LERI-------LRKPEIDA---FAEELKPHQKALLPDNFTVLDRAM 349
++ Y L + LE I L KPE+D+ F E P+ + L + +
Sbjct: 299 DIQNYKDLLNQFKTLELIRWSTFFELNKPELDSQTVFKTE---------PNAWEDLRKRV 349
Query: 350 IEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF--- 406
IEHN+ S Y IS L LL ++ ++EK S ++ + ID+ + F
Sbjct: 350 IEHNIRVISTYYQKISTARLAELLDLSLDESEKFVSDLVSNKTIFAKIDRPAGIATFTTT 409
Query: 407 EDDTEELQQWDQQIVGL 423
D + L W I L
Sbjct: 410 NDPNKVLNAWANNITSL 426
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus
GN=Psmd12 PE=1 SV=4
Length = 456
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 268 EQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY--LERILRKPEIDA 325
+QAL + V ILA ++S ++ + D++ ++ Y L K++ +E + ++
Sbjct: 264 QQALKSVVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWSTLVED 323
Query: 326 FAEEL-KPHQKALLPDNFTVLDRA----------MIEHNLLSASKLYTNISFEELGTLLG 374
+ EL K + D F+ + ++EHN+ +K YT I+ + + LL
Sbjct: 324 YGVELRKGSSETPATDVFSSTEEGEKRWKDLKSRVVEHNIRIMAKYYTRITMKRMAQLLD 383
Query: 375 IAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE---DDTEELQQWDQQIVGLCQALNDIL 431
++ ++E S ++ + +D++ VI+F+ D L W Q++ L +N
Sbjct: 384 LSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSLMSLVNKTT 443
Query: 432 DSMAKKGL 439
+AK+ +
Sbjct: 444 HLIAKEEM 451
>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 28/199 (14%)
Query: 263 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY----LERI- 317
+ E +QAL + V ILA ++S ++ + D++ ++ Y L K++ L R
Sbjct: 259 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWS 318
Query: 318 ---------LRK-----PEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTN 363
LRK P D F + ++ + L ++EHN+ +K YT
Sbjct: 319 TLVEDYGMELRKGSLESPATDVFGSTEEGEKR------WKDLKNRVVEHNIRIMAKYYTR 372
Query: 364 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE---DDTEELQQWDQQI 420
I+ + + LL ++ ++E S ++ + +D++ +I+F+ D L W Q++
Sbjct: 373 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKL 432
Query: 421 VGLCQALNDILDSMAKKGL 439
L +N +AK+ +
Sbjct: 433 NSLMSLVNKTTHLIAKEEM 451
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens
GN=PSMD12 PE=1 SV=3
Length = 456
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 28/199 (14%)
Query: 263 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY----LERI- 317
+ E +QAL + V ILA ++S ++ + D++ ++ Y L K++ L R
Sbjct: 259 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWS 318
Query: 318 ---------LRK-----PEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTN 363
LRK P D F + ++ + L ++EHN+ +K YT
Sbjct: 319 TLVEDYGMELRKGSLESPATDVFGSTEEGEKR------WKDLKNRVVEHNIRIMAKYYTR 372
Query: 364 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE---DDTEELQQWDQQI 420
I+ + + LL ++ ++E S ++ + +D++ +I+F+ D L W Q++
Sbjct: 373 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKL 432
Query: 421 VGLCQALNDILDSMAKKGL 439
L +N +AK+ +
Sbjct: 433 NSLMSLVNKTTHLIAKEEM 451
>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 89/193 (46%), Gaps = 16/193 (8%)
Query: 263 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY--LERILRK 320
+ E +QAL + V ILA ++S ++ + D++ ++ Y L K++ +E +
Sbjct: 259 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWS 318
Query: 321 PEIDAFAEEL-KPHQKALLPDNFTV----------LDRAMIEHNLLSASKLYTNISFEEL 369
++ + EL K ++ D F L ++EHN+ +K YT I+ + +
Sbjct: 319 TLVEDYGMELRKGSLESPATDVFGYTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRM 378
Query: 370 GTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE---DDTEELQQWDQQIVGLCQA 426
LL ++ ++E S ++ + +D++ +I+F+ D L W Q++ L
Sbjct: 379 AQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSL 438
Query: 427 LNDILDSMAKKGL 439
+N +AK+ +
Sbjct: 439 VNKTTHLIAKEEM 451
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 318 LRKPEIDAFAEELKPHQKALLPDNFTV-----LDRAMIEHNLLSASKLYTNISFEELGTL 372
RK + F + L+ H+K L+ D L+R M+E + + Y+ I + +
Sbjct: 283 FRKRSLKDFMKALEEHKKELVEDKVVAVHSQNLERTMLEKEISRVIEPYSEIELSYIARV 342
Query: 373 LGIAPQKAEKIASRMIFEDRMRGSIDQ 399
+G+ EK +RMI + ++ GSIDQ
Sbjct: 343 IGMTVPPTEKAIARMILDKKLMGSIDQ 369
>sp|P68359|CSN4_BRAOL COP9 signalosome complex subunit 4 (Fragments) OS=Brassica oleracea
GN=CSN4 PE=1 SV=1
Length = 45
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
Query: 334 QKALLPDNFTVLDRAMIEH-NLLSASK 359
+KA LPD TVLDRAMIEH NLLSASK
Sbjct: 19 KKAYLPDKSTVLDRAMIEHNNLLSASK 45
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 19/20 (95%)
Query: 236 KRKFLEAALRYYDISQIQKR 255
KRKFL+AALRYY ISQI+K+
Sbjct: 1 KRKFLDAALRYYSISQIEKK 20
>sp|Q8SRT7|RPN3_ENCCU 26S proteasome regulatory subunit RPN3 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN3 PE=1 SV=1
Length = 376
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 264 EEALEQALSAAVTCTILAAA-----GPQRSRVLATLYKDERCSKLKIYPILQKVY-LERI 317
E E AL TC IL+ G ++ +L L + P L+ + L
Sbjct: 179 EGDYESALKCFHTCVILSTNRDLVLGAEKRVILCMLLSSDYSIPYPCKPSLRIYFKLASA 238
Query: 318 LRKPEIDAFAEELKPHQKALLPDNFTV----LDRAMIEHNLLSASKLYTNISFEELGTLL 373
+++ +I F E L+ ++ L+ L + +I+ + S +Y+ IS+E++ +L
Sbjct: 239 VKRADIKKFEETLESNKDELMSQGLYFVAKRLSQNVIQEGIRKISVVYSRISYEDIAHIL 298
Query: 374 GIAPQKAEKIASRMIFEDRMRGSI 397
GI + E + R I + ++G +
Sbjct: 299 GINSGEVEYLVKRTIRKGLIKGKV 322
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 320 KPEIDAFAEELKPHQKALLPDNFTV-----LDRAMIEHNLLSASKLYTNISFEELGTLLG 374
K +I AF + LK ++K ++ D F L R + LL K YT I + L
Sbjct: 324 KNDIYAFEKILKDNRKTIMDDPFIRMYIEDLLRNIRTQVLLKLLKPYTRIRISFISKELN 383
Query: 375 IAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEE---------LQQWDQQIVGLCQ 425
I E + +I ++++RGSIDQV E DT + + +W QI L
Sbjct: 384 IPSSDVESLLVSLILDNKIRGSIDQVNQ--QLELDTAKSSAYWKYTSIHKWANQIGQLNG 441
Query: 426 ALNDIL 431
+N+ L
Sbjct: 442 GINNKL 447
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 308 ILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTV-----LDRAMIEHNLLSASKLYT 362
IL L + +I+ F L+ H+ ++ D F L R + L+ + Y
Sbjct: 309 ILAMTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYK 368
Query: 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEE------LQQW 416
NI+ + L I P + E + I +D ++G IDQV V+ + L++W
Sbjct: 369 NIAIPFIANALNIEPAEVESLLVSCILDDTIKGRIDQVNQVLQLDKINSSASRYNALEKW 428
Query: 417 DQQIVGL 423
QI L
Sbjct: 429 SNQIQSL 435
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis elegans GN=rpn-6.2 PE=3 SV=3
Length = 416
Score = 38.5 bits (88), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 318 LRKPEIDAFAEELKPHQKALLPDNFTV-----LDRAMIEHNLLSASKLYTNISFEELGTL 372
RK + F + L H+ L+ D L+R M+E + + Y+ I + +
Sbjct: 288 FRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIARV 347
Query: 373 LGIAPQKAEKIASRMIFEDRMRGSIDQ 399
+G+ E+ +RMI + ++ GSIDQ
Sbjct: 348 IGMTVPPVERAIARMILDKKLMGSIDQ 374
>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2
SV=1
Length = 423
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 333 HQKALLPDNFTVLDR----AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRM 387
H + DN T L + ++ + N+ +K + +S +++ + + + PQ+AEK M
Sbjct: 282 HSETFTRDNNTGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHM 341
Query: 388 IFEDRMRGSIDQVEAVIHFEDDTEE------LQQWDQQIVGLCQALNDILDSM 434
I + + SI+Q + ++ F D+ E+ L + DQ+++ C L++ L SM
Sbjct: 342 IEDGEIYASINQKDGMVCFHDNPEKYNNPAMLHKIDQEMLK-CIELDEKLKSM 393
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit rpn-6.1
OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 341 NFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 400
+F L M+E +L + Y+ + E + +GI K EK S+MI + ++ GS+DQ
Sbjct: 338 HFHSLSERMLEKDLCRIIEPYSFVQIEHVAQQIGIDRSKVEKKLSQMILDQKLSGSLDQG 397
Query: 401 EAVI 404
E ++
Sbjct: 398 EGML 401
>sp|P0CN46|EIF3C_CRYNJ Eukaryotic translation initiation factor 3 subunit C
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=NIP1 PE=3 SV=1
Length = 885
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 353 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED-DTE 411
+L + + Y ++S L + + + I SRMI+ D + S+DQ++ V+ F +
Sbjct: 739 SLFTYAAYYDSLSLSHLASTFNLPVGRITSIISRMIYTDELAASLDQIDGVVIFHRVEQS 798
Query: 412 ELQQWDQQI 420
E+Q+ QQ+
Sbjct: 799 EVQRLAQQL 807
>sp|P0CN47|EIF3C_CRYNB Eukaryotic translation initiation factor 3 subunit C
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=NIP1 PE=3 SV=1
Length = 885
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 353 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED-DTE 411
+L + + Y ++S L + + + I SRMI+ D + S+DQ++ V+ F +
Sbjct: 739 SLFTYAAYYDSLSLSHLASTFNLPVGRITSIISRMIYTDELAASLDQIDGVVIFHRVEQS 798
Query: 412 ELQQWDQQI 420
E+Q+ QQ+
Sbjct: 799 EVQRLAQQL 807
>sp|Q5AX75|EIF3C_EMENI Eukaryotic translation initiation factor 3 subunit C OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=nip1 PE=3 SV=1
Length = 860
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 354 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 413
L + + Y ++S L T+ ++ +K I SRMI + + ++DQV I F EL
Sbjct: 716 LFTYAPFYDSLSISTLSTMFELSEKKIAAIISRMISHEELGAALDQVNDAIVFRKGV-EL 774
Query: 414 QQWDQQIVGLCQALNDILDSMAK 436
+ QIV L ++L++ K
Sbjct: 775 SRLQSQIVTLADKSMNLLEANEK 797
>sp|Q0CVT0|EIF3C_ASPTN Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=nip1 PE=3 SV=1
Length = 864
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 354 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 413
L + + Y ++S L + + +K + I SRMI + + ++DQV I F EL
Sbjct: 719 LFTYAPFYDSVSIATLSNMFELPEKKIQAIISRMISHEELAAALDQVNNAIVFRKGV-EL 777
Query: 414 QQWDQQIVGLCQALNDILDSMAK 436
+ QIV L ++L++ K
Sbjct: 778 SRLQSQIVTLADKSMNLLEANEK 800
>sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1
Length = 423
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 348 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 406
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 407 EDDTEE------LQQWDQQIVGLCQALNDILDSM 434
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3
PE=2 SV=1
Length = 423
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 348 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 406
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 407 EDDTEE------LQQWDQQIVGLCQALNDILDSM 434
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|B3MIF1|EIF3C_DROAN Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
ananassae GN=eIF3-S8 PE=3 SV=1
Length = 906
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 354 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ-VEAVIHFEDDTEE 412
L + S +YT+IS L + + QK I S+MI + + S+D E V+ +
Sbjct: 760 LFTYSNVYTSISIPSLAQMYELPVQKVHSIISKMIINEELMASLDDPTETVVMHRSEPSR 819
Query: 413 LQQWDQQIVGLCQALNDI 430
LQ Q V L D+
Sbjct: 820 LQALAMQFVDKVTNLVDV 837
>sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1
SV=3
Length = 423
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 348 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 406
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 407 EDDTEE------LQQWDQQIVGLCQALNDILDSM 434
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|Q4W9S8|EIF3C_ASPFU Eukaryotic translation initiation factor 3 subunit C OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=nip1 PE=3 SV=1
Length = 862
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 354 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 413
L + + Y ++S L + ++ +K I SRMI + + ++DQV I F EL
Sbjct: 717 LFTYAPFYDSLSIATLSNMFELSEKKISAIISRMISHEELAAALDQVNNAIVFRKGV-EL 775
Query: 414 QQWDQQIVGLCQALNDILDSMAK 436
+ QIV L ++L++ K
Sbjct: 776 SRLQSQIVTLADKSMNLLEANEK 798
>sp|B0YEH1|EIF3C_ASPFC Eukaryotic translation initiation factor 3 subunit C OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=nip1 PE=3 SV=1
Length = 862
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 354 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 413
L + + Y ++S L + ++ +K I SRMI + + ++DQV I F EL
Sbjct: 717 LFTYAPFYDSLSIATLSNMFELSEKKISAIISRMISHEELAAALDQVNNAIVFRKGV-EL 775
Query: 414 QQWDQQIVGLCQALNDILDSMAK 436
+ QIV L ++L++ K
Sbjct: 776 SRLQSQIVTLADKSMNLLEANEK 798
>sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2
SV=1
Length = 423
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 348 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 406
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 407 EDDTEE------LQQWDQQIVGLCQALNDILDSM 434
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3
PE=2 SV=1
Length = 423
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 348 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 406
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 407 EDDTEE------LQQWDQQIVGLCQALNDILDSM 434
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1
SV=3
Length = 423
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 348 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 406
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 407 EDDTEE------LQQWDQQIVGLCQALNDILDSM 434
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|A1D9P1|EIF3C_NEOFI Eukaryotic translation initiation factor 3 subunit C OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=nip1 PE=3 SV=1
Length = 862
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 354 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 413
L + + Y ++S L + ++ +K I SRMI + + ++DQV I F EL
Sbjct: 717 LFTYAPFYDSLSIATLSNMFELSEKKISAIISRMISHEELAAALDQVNNAIVFRKGV-EL 775
Query: 414 QQWDQQIVGLCQALNDILDSMAK 436
+ QIV L ++L++ K
Sbjct: 776 SRLQSQIVTLADKSMNLLEANEK 798
>sp|A1C987|EIF3C_ASPCL Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=nip1 PE=3 SV=1
Length = 862
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 354 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 413
L + + Y ++S L ++ ++ +K I SRMI + + ++DQV I F EL
Sbjct: 718 LFTYAPFYDSVSVATLASMFELSEKKISAIISRMISHEELAAALDQVNGAIVFRKGV-EL 776
Query: 414 QQWDQQIVGLC 424
+ QIV L
Sbjct: 777 SRLQSQIVTLA 787
>sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2
SV=1
Length = 423
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 348 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 406
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVCF 360
Query: 407 EDDTEE------LQQWDQQIVGLCQALNDILDSM 434
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|B2V7L9|RPOC_SULSY DNA-directed RNA polymerase subunit beta' OS=Sulfurihydrogenibium
sp. (strain YO3AOP1) GN=rpoC PE=3 SV=1
Length = 1579
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 221 LNLQYKVCYAR-----ILDLKRKFLEAALRYYDISQIQK 254
LNL YK+ Y R I+++ RKF E LR+ DI +K
Sbjct: 233 LNLSYKMNYPRLYNKAIIEIARKFSEVGLRFGDIEPTEK 271
>sp|A9BDP3|TGT_PROM4 Queuine tRNA-ribosyltransferase OS=Prochlorococcus marinus (strain
MIT 9211) GN=tgt PE=3 SV=1
Length = 372
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 369 LGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIV 421
LGT+ G++P + K S MI + + E ++H + WDQ I+
Sbjct: 38 LGTVKGVSPDQLLKTGSEMILANTYHLHLQPGEEIVHEAGGLHKFMGWDQPIL 90
>sp|B4MRZ8|EIF3C_DROWI Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
willistoni GN=eIF3-S8 PE=3 SV=1
Length = 919
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 354 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ-VEAVIHFEDDTEE 412
L + S +YT+IS L + + QK I S+MI + + S+D E V+ +
Sbjct: 759 LFTYSNVYTSISIPSLAEMYELPVQKVHSIISKMIINEELMASLDDPSETVVMHRSEPSR 818
Query: 413 LQQWDQQIVGLCQALNDI 430
LQ Q V L D+
Sbjct: 819 LQALAMQFVDKVTNLVDV 836
>sp|Q2U0Q9|EIF3C_ASPOR Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=nip1 PE=3 SV=1
Length = 861
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 354 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 413
L + + Y ++S L + ++ +K I SRMI + + ++DQV I F EL
Sbjct: 716 LFTYAPFYDSLSISTLSNMFELSEKKIAAIISRMISHEELAAALDQVNDAIVFRKGV-EL 774
Query: 414 QQWDQQIVGLCQALNDILDSMAK 436
+ Q+V L ++L++ K
Sbjct: 775 SRLQSQVVTLADKSMNLLEANEK 797
>sp|Q5XPK0|SCARL_ARATH Scar-like domain-containing protein WAVE 5 OS=Arabidopsis thaliana
GN=WAVE5 PE=1 SV=2
Length = 2028
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 257 IGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLER 316
+G+ +DEE L + L TC L A P + T++ +E ++YP L+++ E+
Sbjct: 1135 LGEVVLDEEVLPEQLD--TTCRSLTKAAP-----IMTIFPEE---PPEVYPSLEELPEEK 1184
Query: 317 ILRKPEIDAFAEELKPH-QKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI 375
I ++ E+D + P+ +A+ + L+ H L S Y S EE L+G
Sbjct: 1185 IAQEEEVD---DATHPYFSEAVCDEKIPPLEDPGSTHPSLEESVPYEEASHEE---LVGT 1238
Query: 376 AP 377
P
Sbjct: 1239 NP 1240
>sp|Q1DP77|EIF3C_COCIM Eukaryotic translation initiation factor 3 subunit C
OS=Coccidioides immitis (strain RS) GN=NIP1 PE=3 SV=1
Length = 860
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 354 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 413
L + + Y +S L + + +K I SRMI + + ++DQV I F EL
Sbjct: 715 LFTYAPFYDTLSITTLSNMFDLTEKKISAIISRMISHEELAAALDQVNNAIVFRKGV-EL 773
Query: 414 QQWDQQIVGLCQALNDILDSMAK 436
+ QIV L +L++ K
Sbjct: 774 SRLQSQIVTLADKSMSLLEANEK 796
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,708,708
Number of Sequences: 539616
Number of extensions: 5843826
Number of successful extensions: 17127
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 17024
Number of HSP's gapped (non-prelim): 116
length of query: 443
length of database: 191,569,459
effective HSP length: 121
effective length of query: 322
effective length of database: 126,275,923
effective search space: 40660847206
effective search space used: 40660847206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)