Query 013430
Match_columns 443
No_of_seqs 260 out of 744
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_P 26S proteasome regulato 100.0 5.5E-64 1.9E-68 524.4 18.1 357 62-440 62-439 (445)
2 3txn_A 26S proteasome regulato 100.0 6.1E-42 2.1E-46 351.6 33.2 316 101-435 58-387 (394)
3 4b4t_R RPN7, 26S proteasome re 100.0 1.2E-37 4.1E-42 323.7 21.1 280 137-434 126-421 (429)
4 4b4t_Q 26S proteasome regulato 100.0 5E-32 1.7E-36 273.2 26.3 323 102-435 95-427 (434)
5 4b4t_S RPN3, 26S proteasome re 99.9 3E-26 1E-30 240.4 15.6 286 134-435 173-480 (523)
6 4b4t_O 26S proteasome regulato 99.9 1.1E-23 3.7E-28 216.6 21.0 279 148-434 82-391 (393)
7 1ufm_A COP9 complex subunit 4; 99.8 1.5E-20 5.3E-25 152.2 6.1 72 338-409 5-76 (84)
8 3t5x_A PCI domain-containing p 99.7 7.8E-16 2.7E-20 144.5 15.9 169 221-408 12-192 (203)
9 3t5v_B Nuclear mRNA export pro 99.5 5.3E-13 1.8E-17 139.1 23.3 242 155-409 139-429 (455)
10 4b0z_A RPN12, 26S proteasome r 98.3 1.1E-05 3.7E-10 76.6 14.1 203 189-408 13-228 (229)
11 3chm_A COP9 signalosome comple 97.9 0.00013 4.6E-09 66.0 12.3 127 271-407 26-155 (169)
12 3ro3_A PINS homolog, G-protein 97.5 0.001 3.6E-08 55.0 11.8 112 140-252 7-118 (164)
13 3ro3_A PINS homolog, G-protein 97.5 0.0029 1E-07 52.2 14.5 134 116-252 25-158 (164)
14 3gw4_A Uncharacterized protein 97.0 0.019 6.6E-07 49.9 14.8 134 116-253 42-177 (203)
15 3gw4_A Uncharacterized protein 97.0 0.011 3.7E-07 51.6 12.8 110 142-252 26-136 (203)
16 3u3w_A Transcriptional activat 96.9 0.046 1.6E-06 51.6 18.1 141 109-252 84-225 (293)
17 3ro2_A PINS homolog, G-protein 96.9 0.0061 2.1E-07 56.6 11.7 109 143-252 224-332 (338)
18 2qfc_A PLCR protein; TPR, HTH, 96.9 0.039 1.3E-06 52.1 17.6 139 111-252 86-225 (293)
19 1elr_A TPR2A-domain of HOP; HO 96.9 0.017 5.9E-07 45.9 12.2 104 142-252 4-108 (131)
20 3u3w_A Transcriptional activat 96.8 0.027 9.3E-07 53.3 15.4 152 99-252 29-184 (293)
21 3sf4_A G-protein-signaling mod 96.8 0.024 8.2E-07 54.6 15.0 110 142-252 227-336 (406)
22 1qqe_A Vesicular transport pro 96.8 0.067 2.3E-06 50.7 17.7 109 142-252 77-187 (292)
23 4a1s_A PINS, partner of inscut 96.7 0.01 3.5E-07 58.0 11.4 109 143-252 264-372 (411)
24 3nf1_A KLC 1, kinesin light ch 96.6 0.065 2.2E-06 49.4 16.2 110 142-252 111-224 (311)
25 4gcn_A Protein STI-1; structur 96.6 0.029 9.9E-07 46.6 12.4 105 141-252 7-112 (127)
26 3ro2_A PINS homolog, G-protein 96.6 0.028 9.6E-07 52.0 13.2 132 116-252 21-172 (338)
27 2qfc_A PLCR protein; TPR, HTH, 96.5 0.02 6.8E-07 54.2 11.7 106 146-252 79-184 (293)
28 2dba_A Smooth muscle cell asso 96.4 0.056 1.9E-06 44.2 13.0 100 143-252 29-128 (148)
29 2ifu_A Gamma-SNAP; membrane fu 96.4 0.067 2.3E-06 51.1 15.3 111 140-253 74-185 (307)
30 4ga2_A E3 SUMO-protein ligase 96.4 0.011 3.9E-07 50.5 8.8 93 147-252 2-94 (150)
31 3edt_B KLC 2, kinesin light ch 96.4 0.014 4.8E-07 53.0 9.7 111 141-252 42-156 (283)
32 3q15_A PSP28, response regulat 96.4 0.047 1.6E-06 53.5 14.1 133 117-252 158-290 (378)
33 3sf4_A G-protein-signaling mod 96.3 0.041 1.4E-06 53.0 13.2 132 116-252 25-176 (406)
34 3ulq_A Response regulator aspa 96.3 0.039 1.3E-06 54.0 12.8 133 116-252 119-253 (383)
35 3q15_A PSP28, response regulat 96.3 0.047 1.6E-06 53.5 13.3 132 117-252 118-251 (378)
36 2xev_A YBGF; tetratricopeptide 96.2 0.059 2E-06 43.3 11.7 101 145-252 5-105 (129)
37 3nf1_A KLC 1, kinesin light ch 96.2 0.02 6.7E-07 53.0 9.6 110 142-252 27-140 (311)
38 4a1s_A PINS, partner of inscut 96.2 0.045 1.5E-06 53.4 12.7 132 116-252 64-212 (411)
39 4gco_A Protein STI-1; structur 96.1 0.089 3.1E-06 43.6 12.6 100 140-252 11-110 (126)
40 2ifu_A Gamma-SNAP; membrane fu 96.0 0.088 3E-06 50.3 13.6 107 141-250 115-222 (307)
41 3edt_B KLC 2, kinesin light ch 96.0 0.1 3.5E-06 47.1 13.2 111 141-252 84-198 (283)
42 3vtx_A MAMA; tetratricopeptide 95.9 0.069 2.3E-06 46.0 11.3 98 142-252 5-102 (184)
43 2vyi_A SGTA protein; chaperone 95.9 0.17 5.9E-06 39.7 12.7 99 141-252 11-109 (131)
44 3ulq_A Response regulator aspa 95.8 0.16 5.5E-06 49.5 14.8 106 146-253 107-214 (383)
45 3sz7_A HSC70 cochaperone (SGT) 95.8 0.13 4.6E-06 43.7 12.6 99 142-253 11-109 (164)
46 1elw_A TPR1-domain of HOP; HOP 95.8 0.13 4.3E-06 39.8 11.4 97 143-252 5-101 (118)
47 3n71_A Histone lysine methyltr 95.7 0.25 8.5E-06 51.5 16.4 135 116-252 325-464 (490)
48 2lni_A Stress-induced-phosphop 95.7 0.075 2.6E-06 42.4 10.0 95 145-252 19-113 (133)
49 1qqe_A Vesicular transport pro 95.7 0.071 2.4E-06 50.6 11.4 110 142-253 37-148 (292)
50 3upv_A Heat shock protein STI1 95.7 0.15 5E-06 41.2 11.8 99 142-253 4-102 (126)
51 4b4t_Q 26S proteasome regulato 95.6 0.054 1.9E-06 53.3 10.5 109 143-252 96-204 (434)
52 3gyz_A Chaperone protein IPGC; 95.5 0.18 6.2E-06 43.7 12.5 122 118-252 7-133 (151)
53 1a17_A Serine/threonine protei 95.5 0.18 6.3E-06 41.8 11.9 98 142-252 13-110 (166)
54 4ga2_A E3 SUMO-protein ligase 95.3 0.061 2.1E-06 45.9 8.5 98 142-252 31-129 (150)
55 2fbn_A 70 kDa peptidylprolyl i 95.3 0.24 8.2E-06 43.5 12.7 105 142-252 38-151 (198)
56 3uq3_A Heat shock protein STI1 95.2 0.14 4.7E-06 45.7 11.1 103 142-252 5-108 (258)
57 4i17_A Hypothetical protein; T 95.2 0.41 1.4E-05 42.7 14.2 101 145-252 45-146 (228)
58 3q49_B STIP1 homology and U bo 95.2 0.22 7.6E-06 40.2 11.4 98 143-253 10-107 (137)
59 1na0_A Designed protein CTPR3; 95.2 0.2 6.8E-06 39.0 10.7 97 143-252 10-106 (125)
60 3rkv_A Putative peptidylprolyl 95.2 0.11 3.9E-06 44.1 9.8 105 142-252 11-126 (162)
61 3qky_A Outer membrane assembly 95.1 0.3 1E-05 44.7 13.3 104 143-253 16-127 (261)
62 3uq3_A Heat shock protein STI1 95.0 0.17 5.8E-06 45.1 10.9 109 143-252 39-168 (258)
63 3mv2_B Coatomer subunit epsilo 95.0 0.078 2.7E-06 52.3 9.1 101 146-252 104-207 (310)
64 3as5_A MAMA; tetratricopeptide 94.9 0.31 1.1E-05 40.7 11.7 98 142-252 8-105 (186)
65 2l6j_A TPR repeat-containing p 94.8 0.17 5.8E-06 39.2 9.1 93 143-242 5-97 (111)
66 1hh8_A P67PHOX, NCF-2, neutrop 94.8 0.22 7.6E-06 43.6 10.8 102 143-252 38-150 (213)
67 3as5_A MAMA; tetratricopeptide 94.7 0.31 1E-05 40.7 11.3 98 143-253 77-174 (186)
68 1hxi_A PEX5, peroxisome target 94.7 0.36 1.2E-05 39.4 11.4 94 146-252 21-114 (121)
69 2xcb_A PCRH, regulatory protei 94.6 0.27 9.2E-06 40.9 10.5 98 143-253 19-116 (142)
70 2ho1_A Type 4 fimbrial biogene 94.6 0.36 1.2E-05 43.3 12.1 99 143-252 106-204 (252)
71 2fo7_A Synthetic consensus TPR 94.6 0.26 8.9E-06 38.6 9.9 95 145-252 4-98 (136)
72 3qky_A Outer membrane assembly 94.5 0.31 1E-05 44.7 11.6 106 143-252 53-177 (261)
73 2fo7_A Synthetic consensus TPR 94.5 0.51 1.8E-05 36.8 11.5 96 144-252 37-132 (136)
74 1hz4_A MALT regulatory protein 94.4 0.47 1.6E-05 45.6 13.0 111 140-252 12-122 (373)
75 2vgx_A Chaperone SYCD; alterna 94.3 0.47 1.6E-05 40.2 11.6 97 143-252 22-118 (148)
76 2vq2_A PILW, putative fimbrial 94.3 0.56 1.9E-05 40.7 12.4 98 144-252 78-176 (225)
77 2kck_A TPR repeat; tetratricop 94.3 0.14 4.7E-06 39.3 7.4 96 146-252 10-106 (112)
78 1hz4_A MALT regulatory protein 94.2 0.8 2.7E-05 44.0 14.4 130 118-252 71-203 (373)
79 2ho1_A Type 4 fimbrial biogene 94.2 0.27 9.1E-06 44.2 10.1 99 143-252 72-170 (252)
80 2q7f_A YRRB protein; TPR, prot 94.1 0.47 1.6E-05 41.9 11.6 97 143-252 92-188 (243)
81 3mkr_A Coatomer subunit epsilo 94.1 0.45 1.5E-05 45.3 12.1 93 144-252 103-195 (291)
82 3n71_A Histone lysine methyltr 94.1 0.58 2E-05 48.7 13.8 104 147-252 314-422 (490)
83 3u4t_A TPR repeat-containing p 94.0 0.19 6.4E-06 45.7 8.8 98 145-252 6-103 (272)
84 1ihg_A Cyclophilin 40; ppiase 93.9 0.29 9.9E-06 48.7 10.8 105 142-252 223-336 (370)
85 2e2e_A Formate-dependent nitri 93.9 1.3 4.4E-05 37.6 13.6 96 144-252 46-144 (177)
86 3ieg_A DNAJ homolog subfamily 93.8 0.58 2E-05 43.6 12.0 99 145-252 237-335 (359)
87 2q7f_A YRRB protein; TPR, prot 93.8 0.5 1.7E-05 41.7 11.0 97 143-252 58-154 (243)
88 4i17_A Hypothetical protein; T 93.7 1.6 5.5E-05 38.6 14.4 69 143-212 77-146 (228)
89 1a17_A Serine/threonine protei 93.6 1 3.6E-05 37.0 12.3 99 143-252 48-146 (166)
90 2vq2_A PILW, putative fimbrial 93.5 0.66 2.2E-05 40.2 11.2 96 143-251 9-105 (225)
91 1p5q_A FKBP52, FK506-binding p 93.5 0.63 2.2E-05 45.2 12.2 107 140-252 145-259 (336)
92 3ieg_A DNAJ homolog subfamily 93.5 0.82 2.8E-05 42.6 12.6 105 144-252 190-301 (359)
93 3u4t_A TPR repeat-containing p 93.5 0.33 1.1E-05 44.0 9.5 98 145-252 40-137 (272)
94 1xnf_A Lipoprotein NLPI; TPR, 93.4 0.64 2.2E-05 41.9 11.3 99 141-252 42-140 (275)
95 1hh8_A P67PHOX, NCF-2, neutrop 93.3 0.67 2.3E-05 40.4 11.0 92 145-252 9-100 (213)
96 3mkr_A Coatomer subunit epsilo 93.3 0.34 1.2E-05 46.2 9.6 98 144-252 132-229 (291)
97 3mv2_B Coatomer subunit epsilo 93.2 1.3 4.4E-05 43.5 13.7 139 144-299 138-285 (310)
98 3hym_B Cell division cycle pro 93.1 0.36 1.2E-05 44.7 9.3 104 143-252 194-299 (330)
99 3vtx_A MAMA; tetratricopeptide 93.0 0.69 2.4E-05 39.5 10.4 97 143-252 40-136 (184)
100 2xpi_A Anaphase-promoting comp 92.9 0.61 2.1E-05 47.7 11.6 103 144-252 477-579 (597)
101 1fch_A Peroxisomal targeting s 92.9 0.87 3E-05 43.1 11.9 98 143-253 218-315 (368)
102 1wi9_A Protein C20ORF116 homol 92.8 0.23 7.9E-06 38.2 6.0 51 358-408 16-66 (72)
103 2y4t_A DNAJ homolog subfamily 92.8 0.9 3.1E-05 44.4 12.1 107 143-252 212-324 (450)
104 4eqf_A PEX5-related protein; a 92.7 0.87 3E-05 43.4 11.7 97 144-253 215-311 (365)
105 3k9i_A BH0479 protein; putativ 92.7 0.41 1.4E-05 38.3 8.0 89 154-252 2-90 (117)
106 2yhc_A BAMD, UPF0169 lipoprote 92.7 3.3 0.00011 37.0 15.0 104 144-252 43-176 (225)
107 3qww_A SET and MYND domain-con 92.6 1.4 4.7E-05 45.1 13.5 98 153-252 309-411 (433)
108 2yhc_A BAMD, UPF0169 lipoprote 92.5 1.2 4.2E-05 39.9 11.9 101 145-252 7-125 (225)
109 3hym_B Cell division cycle pro 92.5 0.38 1.3E-05 44.6 8.5 28 184-211 194-221 (330)
110 2c2l_A CHIP, carboxy terminus 92.5 0.67 2.3E-05 43.6 10.4 97 144-253 6-102 (281)
111 1kt0_A FKBP51, 51 kDa FK506-bi 92.5 0.84 2.9E-05 46.4 11.8 107 140-252 266-380 (457)
112 3urz_A Uncharacterized protein 92.5 1.1 3.9E-05 39.7 11.4 95 145-252 7-117 (208)
113 3cv0_A Peroxisome targeting si 92.4 0.83 2.9E-05 42.1 10.7 98 143-253 173-270 (327)
114 2gw1_A Mitochondrial precursor 92.1 1.1 3.6E-05 44.5 11.8 102 144-252 374-478 (514)
115 2gw1_A Mitochondrial precursor 92.1 1.1 3.7E-05 44.5 11.8 97 142-252 6-102 (514)
116 4abn_A Tetratricopeptide repea 92.0 1.2 4.2E-05 45.3 12.4 97 142-252 102-208 (474)
117 2pl2_A Hypothetical conserved 92.0 1.1 3.7E-05 40.2 10.6 95 144-252 75-180 (217)
118 4f3v_A ESX-1 secretion system 91.8 0.95 3.3E-05 43.8 10.6 100 140-251 100-199 (282)
119 1rz4_A Eukaryotic translation 91.7 1.3 4.6E-05 41.4 11.2 85 315-408 106-191 (226)
120 1elr_A TPR2A-domain of HOP; HO 91.7 1.6 5.4E-05 34.0 10.3 71 143-213 39-109 (131)
121 3qwp_A SET and MYND domain-con 91.6 1.4 4.9E-05 44.8 12.3 107 115-222 302-413 (429)
122 3cv0_A Peroxisome targeting si 91.5 1 3.4E-05 41.5 10.2 103 143-252 207-315 (327)
123 3qww_A SET and MYND domain-con 91.4 2 6.9E-05 43.9 13.2 105 117-222 315-424 (433)
124 1xnf_A Lipoprotein NLPI; TPR, 91.4 0.25 8.4E-06 44.7 5.7 96 148-252 11-106 (275)
125 2y4t_A DNAJ homolog subfamily 91.3 1.4 4.9E-05 42.9 11.6 97 143-252 27-123 (450)
126 3qwp_A SET and MYND domain-con 91.2 1.4 4.8E-05 44.9 11.8 103 147-252 293-400 (429)
127 2pl2_A Hypothetical conserved 91.2 2.1 7.3E-05 38.2 11.8 96 144-252 7-113 (217)
128 2xev_A YBGF; tetratricopeptide 91.0 1.8 6.3E-05 34.1 10.1 69 143-215 40-108 (129)
129 3ma5_A Tetratricopeptide repea 90.9 1.9 6.5E-05 33.5 9.9 66 143-215 8-73 (100)
130 3urz_A Uncharacterized protein 90.9 3.6 0.00012 36.4 12.9 66 143-215 55-120 (208)
131 1fch_A Peroxisomal targeting s 90.5 1.1 3.9E-05 42.3 9.7 103 143-252 252-359 (368)
132 4eqf_A PEX5-related protein; a 90.4 1.9 6.6E-05 40.9 11.3 95 145-252 68-162 (365)
133 3fp2_A TPR repeat-containing p 90.0 1.5 5.3E-05 43.8 10.7 102 144-252 380-491 (537)
134 2xpi_A Anaphase-promoting comp 89.6 1.1 3.8E-05 45.7 9.3 96 144-252 409-504 (597)
135 2kat_A Uncharacterized protein 89.6 3 0.0001 32.6 10.2 65 143-214 20-84 (115)
136 1p5q_A FKBP52, FK506-binding p 89.5 3.7 0.00013 39.6 12.6 122 117-251 164-293 (336)
137 3fp2_A TPR repeat-containing p 89.3 1.1 3.7E-05 44.9 8.9 98 143-253 311-408 (537)
138 4abn_A Tetratricopeptide repea 89.3 1.6 5.5E-05 44.4 10.3 96 143-252 138-250 (474)
139 2vsy_A XCC0866; transferase, g 89.2 1.8 6.1E-05 44.7 10.7 94 145-251 26-119 (568)
140 3qou_A Protein YBBN; thioredox 89.1 6.4 0.00022 36.8 13.8 96 144-252 119-214 (287)
141 1na3_A Designed protein CTPR2; 89.0 1.3 4.6E-05 32.5 7.2 70 177-252 3-72 (91)
142 4g1t_A Interferon-induced prot 88.7 2 6.7E-05 42.4 10.2 107 143-252 52-167 (472)
143 3txn_A 26S proteasome regulato 88.5 3.3 0.00011 42.0 11.7 106 145-252 22-168 (394)
144 1w3b_A UDP-N-acetylglucosamine 88.2 2.3 7.8E-05 40.9 10.1 92 148-252 5-96 (388)
145 2v5f_A Prolyl 4-hydroxylase su 87.9 5.5 0.00019 31.4 10.7 71 145-215 8-78 (104)
146 2if4_A ATFKBP42; FKBP-like, al 87.8 0.9 3.1E-05 44.2 6.9 106 141-252 178-293 (338)
147 4gcn_A Protein STI-1; structur 87.8 4 0.00014 33.2 10.0 78 143-223 43-120 (127)
148 4gyw_A UDP-N-acetylglucosamine 87.5 2.2 7.6E-05 46.5 10.4 94 145-251 12-105 (723)
149 2vsy_A XCC0866; transferase, g 87.2 3.8 0.00013 42.2 11.6 98 143-253 58-158 (568)
150 3sz7_A HSC70 cochaperone (SGT) 86.8 8.5 0.00029 32.0 11.9 67 143-216 46-112 (164)
151 2fbn_A 70 kDa peptidylprolyl i 86.7 4.4 0.00015 35.1 10.2 88 143-243 89-176 (198)
152 2kc7_A BFR218_protein; tetratr 86.7 6.6 0.00023 29.5 10.1 86 146-252 4-90 (99)
153 2vyi_A SGTA protein; chaperone 86.6 7.9 0.00027 29.7 10.8 65 143-214 47-111 (131)
154 3upv_A Heat shock protein STI1 86.5 3.3 0.00011 32.8 8.6 64 143-213 39-102 (126)
155 4gyw_A UDP-N-acetylglucosamine 86.4 3 0.0001 45.4 10.7 97 143-252 44-140 (723)
156 1w3b_A UDP-N-acetylglucosamine 86.4 2.5 8.5E-05 40.6 9.1 96 143-251 238-333 (388)
157 2kck_A TPR repeat; tetratricop 86.1 3.4 0.00012 31.0 8.2 66 144-214 42-108 (112)
158 2hr2_A Hypothetical protein; a 86.0 16 0.00056 32.0 13.4 111 143-254 12-133 (159)
159 3rkv_A Putative peptidylprolyl 85.8 3.3 0.00011 34.7 8.6 81 140-229 61-142 (162)
160 3k9i_A BH0479 protein; putativ 85.7 4.5 0.00015 31.9 9.0 68 141-215 26-93 (117)
161 1wao_1 Serine/threonine protei 85.2 1.5 5E-05 45.0 7.1 94 146-252 10-103 (477)
162 4b4t_T 26S proteasome regulato 84.9 2.9 0.0001 40.1 8.7 184 192-386 13-223 (274)
163 4b4t_P 26S proteasome regulato 84.8 36 0.0012 34.5 17.8 71 181-251 135-205 (445)
164 4gco_A Protein STI-1; structur 84.5 5.8 0.0002 32.2 9.4 74 143-225 48-121 (126)
165 2lni_A Stress-induced-phosphop 84.3 7 0.00024 30.3 9.5 65 143-214 51-115 (133)
166 1ouv_A Conserved hypothetical 84.3 5.6 0.00019 36.1 10.1 92 143-251 7-106 (273)
167 1kt0_A FKBP51, 51 kDa FK506-bi 84.1 8.1 0.00028 39.0 12.1 95 141-248 316-410 (457)
168 4g1t_A Interferon-induced prot 84.1 5 0.00017 39.4 10.3 103 146-252 338-459 (472)
169 3qou_A Protein YBBN; thioredox 84.0 8.8 0.0003 35.8 11.6 97 143-252 152-248 (287)
170 1na3_A Designed protein CTPR2; 83.7 10 0.00035 27.4 11.0 64 143-213 10-73 (91)
171 3ma5_A Tetratricopeptide repea 83.6 4 0.00014 31.5 7.6 64 183-252 7-70 (100)
172 2dba_A Smooth muscle cell asso 83.6 10 0.00035 30.1 10.4 66 142-214 65-130 (148)
173 1elw_A TPR1-domain of HOP; HOP 83.3 5.4 0.00018 30.1 8.2 65 182-252 3-67 (118)
174 2pzi_A Probable serine/threoni 83.3 5.7 0.00019 42.5 11.0 93 153-252 402-496 (681)
175 1xn7_A Hypothetical protein YH 83.3 1.9 6.4E-05 33.5 5.3 40 355-394 8-47 (78)
176 2r5s_A Uncharacterized protein 82.7 21 0.0007 30.1 12.9 94 145-252 9-103 (176)
177 1ub9_A Hypothetical protein PH 82.7 4.7 0.00016 31.3 7.7 64 362-425 29-96 (100)
178 3q49_B STIP1 homology and U bo 82.2 11 0.00039 29.7 10.1 65 143-214 44-108 (137)
179 3r0a_A Putative transcriptiona 82.2 5.7 0.0002 32.9 8.4 36 364-399 43-78 (123)
180 2r5s_A Uncharacterized protein 82.1 6.5 0.00022 33.4 9.1 96 142-251 40-136 (176)
181 1qgp_A Protein (double strande 82.0 2.3 7.9E-05 32.7 5.4 38 363-400 31-68 (77)
182 1ihg_A Cyclophilin 40; ppiase 81.9 7.1 0.00024 38.5 10.4 96 137-245 268-363 (370)
183 1na0_A Designed protein CTPR3; 81.8 4.1 0.00014 31.1 7.0 69 178-252 4-72 (125)
184 1qbj_A Protein (double-strande 81.1 2.8 9.5E-05 32.8 5.6 45 352-396 13-60 (81)
185 1ouv_A Conserved hypothetical 80.7 7.8 0.00027 35.0 9.6 91 144-251 40-142 (273)
186 2xcb_A PCRH, regulatory protei 80.5 7 0.00024 31.9 8.4 66 181-252 16-81 (142)
187 2k02_A Ferrous iron transport 80.2 1.9 6.6E-05 34.3 4.4 42 355-396 8-49 (87)
188 2kc7_A BFR218_protein; tetratr 80.1 16 0.00055 27.2 10.1 61 187-252 4-64 (99)
189 2vgx_A Chaperone SYCD; alterna 79.8 7 0.00024 32.7 8.3 66 181-252 19-84 (148)
190 3ffl_A Anaphase-promoting comp 79.1 5.2 0.00018 35.7 7.4 69 184-252 21-92 (167)
191 1sfx_A Conserved hypothetical 78.8 13 0.00046 28.7 9.2 39 361-399 32-70 (109)
192 2ond_A Cleavage stimulation fa 78.7 13 0.00045 34.7 10.7 115 120-253 84-199 (308)
193 4f3v_A ESX-1 secretion system 78.3 32 0.0011 33.0 13.3 99 144-252 137-237 (282)
194 4b8x_A SCO5413, possible MARR- 77.7 6.3 0.00022 33.4 7.4 67 324-402 22-90 (147)
195 1wao_1 Serine/threonine protei 77.5 6.9 0.00024 39.9 8.9 95 142-247 40-134 (477)
196 2kat_A Uncharacterized protein 77.0 8.6 0.00029 29.9 7.6 64 183-252 19-82 (115)
197 2l6j_A TPR repeat-containing p 76.8 9.6 0.00033 28.7 7.7 64 183-252 4-67 (111)
198 1tbx_A ORF F-93, hypothetical 76.5 15 0.00052 28.5 8.9 60 361-420 20-84 (99)
199 2h6f_A Protein farnesyltransfe 76.4 17 0.00058 36.0 11.2 93 146-251 101-194 (382)
200 1jgs_A Multiple antibiotic res 74.8 18 0.00063 29.4 9.4 42 361-402 46-87 (138)
201 2a61_A Transcriptional regulat 72.6 22 0.00075 29.1 9.4 42 361-402 45-86 (145)
202 3bpv_A Transcriptional regulat 72.1 23 0.00077 28.7 9.3 43 361-403 41-83 (138)
203 2nnn_A Probable transcriptiona 72.0 27 0.00092 28.3 9.7 42 361-402 50-91 (140)
204 2fbi_A Probable transcriptiona 72.0 21 0.0007 29.1 9.0 43 361-403 48-90 (142)
205 2jt1_A PEFI protein; solution 70.9 5.9 0.0002 30.6 4.9 33 363-395 24-56 (77)
206 2fbh_A Transcriptional regulat 70.6 32 0.0011 28.0 10.0 50 359-408 48-100 (146)
207 3rjv_A Putative SEL1 repeat pr 70.4 10 0.00035 33.5 7.2 91 143-251 19-117 (212)
208 2v5f_A Prolyl 4-hydroxylase su 70.1 8.4 0.00029 30.3 5.9 69 184-252 6-75 (104)
209 3k0l_A Repressor protein; heli 69.8 29 0.00099 29.3 9.8 57 351-407 48-107 (162)
210 2gxg_A 146AA long hypothetical 69.7 31 0.0011 28.1 9.7 54 354-408 42-98 (146)
211 3cdh_A Transcriptional regulat 69.7 23 0.00077 29.6 8.9 58 351-408 45-105 (155)
212 2if4_A ATFKBP42; FKBP-like, al 69.3 7.9 0.00027 37.3 6.6 96 144-252 232-328 (338)
213 3oop_A LIN2960 protein; protei 68.9 24 0.00082 29.0 8.8 48 361-408 49-99 (143)
214 3tgn_A ADC operon repressor AD 67.9 11 0.00039 31.0 6.6 51 351-402 40-90 (146)
215 3rjv_A Putative SEL1 repeat pr 67.8 20 0.00069 31.5 8.6 95 144-252 52-158 (212)
216 1z7u_A Hypothetical protein EF 67.1 38 0.0013 27.1 9.4 41 362-402 34-75 (112)
217 3gyz_A Chaperone protein IPGC; 66.8 14 0.00049 31.3 7.1 66 181-252 34-99 (151)
218 3eco_A MEPR; mutlidrug efflux 66.7 29 0.00099 28.2 8.8 41 362-402 46-86 (139)
219 2oqg_A Possible transcriptiona 66.6 42 0.0014 26.4 9.6 37 362-398 33-69 (114)
220 2h6f_A Protein farnesyltransfe 66.4 16 0.00054 36.2 8.3 96 144-252 133-229 (382)
221 1lj9_A Transcriptional regulat 66.1 33 0.0011 28.0 9.2 42 361-402 41-82 (144)
222 2d1h_A ST1889, 109AA long hypo 65.9 30 0.001 26.6 8.4 41 361-401 34-74 (109)
223 3ech_A MEXR, multidrug resista 65.8 21 0.0007 29.4 7.8 42 361-402 49-90 (142)
224 2frh_A SARA, staphylococcal ac 65.8 15 0.00053 30.1 6.9 47 362-408 52-101 (127)
225 3g3z_A NMB1585, transcriptiona 65.4 23 0.00078 29.2 8.0 48 361-408 43-93 (145)
226 2nyx_A Probable transcriptiona 64.9 27 0.00093 29.8 8.6 42 361-402 57-98 (168)
227 2rdp_A Putative transcriptiona 64.9 43 0.0015 27.5 9.7 42 361-402 54-95 (150)
228 1hxi_A PEX5, peroxisome target 64.8 12 0.00041 30.0 5.9 65 182-252 16-80 (121)
229 2ooe_A Cleavage stimulation fa 64.3 23 0.00078 35.8 9.2 99 143-253 322-421 (530)
230 1s3j_A YUSO protein; structura 64.1 26 0.00089 29.1 8.2 42 361-402 49-90 (155)
231 3bja_A Transcriptional regulat 63.8 23 0.0008 28.6 7.7 42 361-402 45-86 (139)
232 2cfx_A HTH-type transcriptiona 63.6 14 0.00048 31.1 6.4 42 359-400 15-59 (144)
233 3bj6_A Transcriptional regulat 63.5 26 0.00088 29.0 8.0 57 352-408 43-102 (152)
234 2heo_A Z-DNA binding protein 1 63.4 14 0.00049 27.2 5.6 34 362-395 24-57 (67)
235 2htj_A P fimbrial regulatory p 63.3 13 0.00043 28.2 5.4 35 362-396 13-47 (81)
236 2pzi_A Probable serine/threoni 63.3 13 0.00045 39.6 7.4 96 143-252 434-529 (681)
237 2hr3_A Probable transcriptiona 63.2 43 0.0015 27.4 9.3 48 361-408 48-98 (147)
238 1r7j_A Conserved hypothetical 62.7 54 0.0019 25.8 10.1 45 364-411 21-65 (95)
239 3nrv_A Putative transcriptiona 62.6 27 0.00092 28.7 7.9 55 353-407 44-101 (148)
240 3hsr_A HTH-type transcriptiona 62.2 25 0.00084 28.9 7.6 58 351-408 38-98 (140)
241 2p5v_A Transcriptional regulat 61.9 15 0.00051 31.6 6.3 42 359-400 20-64 (162)
242 3cjn_A Transcriptional regulat 61.9 34 0.0012 28.6 8.6 47 361-407 64-113 (162)
243 3s2w_A Transcriptional regulat 61.7 34 0.0012 28.7 8.5 48 361-408 62-112 (159)
244 2fa5_A Transcriptional regulat 60.8 35 0.0012 28.5 8.5 42 361-402 61-102 (162)
245 2cg4_A Regulatory protein ASNC 60.8 15 0.00052 31.1 6.1 41 360-400 19-62 (152)
246 1klx_A Cysteine rich protein B 60.8 26 0.0009 28.7 7.5 88 148-252 31-126 (138)
247 3cuo_A Uncharacterized HTH-typ 60.8 52 0.0018 24.9 9.9 46 362-407 37-82 (99)
248 2xm6_A Protein corresponding t 59.6 36 0.0012 33.9 9.6 22 146-167 43-68 (490)
249 3f3x_A Transcriptional regulat 59.5 49 0.0017 27.0 9.0 41 361-402 49-89 (144)
250 2eth_A Transcriptional regulat 59.4 58 0.002 27.0 9.6 41 362-402 57-97 (154)
251 2ond_A Cleavage stimulation fa 59.1 71 0.0024 29.5 11.1 84 158-252 80-163 (308)
252 2dbb_A Putative HTH-type trans 58.6 17 0.00059 30.7 6.0 41 360-400 20-63 (151)
253 2qww_A Transcriptional regulat 58.5 27 0.00093 28.9 7.3 48 361-408 53-105 (154)
254 3bro_A Transcriptional regulat 58.4 43 0.0015 27.1 8.4 45 363-407 50-97 (141)
255 2xm6_A Protein corresponding t 58.2 39 0.0013 33.6 9.6 90 145-251 114-215 (490)
256 3bdd_A Regulatory protein MARR 57.8 23 0.00077 28.8 6.5 42 361-402 43-84 (142)
257 2w25_A Probable transcriptiona 57.3 21 0.00072 30.1 6.4 40 361-400 19-61 (150)
258 2ff4_A Probable regulatory pro 57.2 34 0.0011 33.9 8.8 90 129-225 158-251 (388)
259 2bv6_A MGRA, HTH-type transcri 57.1 26 0.00089 28.6 6.8 42 361-402 49-90 (142)
260 2y75_A HTH-type transcriptiona 56.1 25 0.00085 28.9 6.5 43 362-404 25-67 (129)
261 2ia0_A Putative HTH-type trans 55.9 21 0.00072 31.2 6.3 41 360-400 28-71 (171)
262 2pex_A Transcriptional regulat 55.9 83 0.0028 25.8 10.0 47 361-407 59-108 (153)
263 1pc2_A Mitochondria fission pr 55.7 1E+02 0.0035 26.7 13.5 67 144-215 34-103 (152)
264 3deu_A Transcriptional regulat 55.7 52 0.0018 28.0 8.8 48 361-408 66-116 (166)
265 1ku9_A Hypothetical protein MJ 55.5 61 0.0021 26.3 8.9 41 362-402 40-80 (152)
266 4g26_A Pentatricopeptide repea 54.7 1.2E+02 0.0042 30.9 12.8 96 146-252 109-204 (501)
267 3kp7_A Transcriptional regulat 54.1 56 0.0019 26.9 8.5 54 353-407 42-100 (151)
268 3e6m_A MARR family transcripti 53.6 39 0.0013 28.4 7.5 48 361-408 65-115 (161)
269 2e2e_A Formate-dependent nitri 53.5 92 0.0032 25.5 10.6 66 143-215 79-147 (177)
270 3nqo_A MARR-family transcripti 53.0 79 0.0027 27.5 9.7 42 361-402 55-96 (189)
271 2pg4_A Uncharacterized protein 51.9 20 0.00067 27.8 4.9 45 363-407 30-76 (95)
272 3jth_A Transcription activator 51.7 78 0.0027 24.2 8.5 37 362-398 35-71 (98)
273 2qvo_A Uncharacterized protein 51.5 47 0.0016 25.6 7.1 46 363-408 30-75 (95)
274 1xd7_A YWNA; structural genomi 51.4 27 0.00093 29.6 6.1 48 356-405 17-64 (145)
275 2kko_A Possible transcriptiona 50.9 76 0.0026 25.1 8.5 37 362-398 37-73 (108)
276 1yyv_A Putative transcriptiona 50.9 1.1E+02 0.0036 25.4 10.0 42 361-402 46-88 (131)
277 3i4p_A Transcriptional regulat 49.7 20 0.00069 30.9 5.0 46 355-400 9-57 (162)
278 3df8_A Possible HXLR family tr 49.6 47 0.0016 26.7 7.0 35 364-398 43-78 (111)
279 2e1c_A Putative HTH-type trans 48.6 19 0.00067 31.5 4.8 41 359-399 37-80 (171)
280 3fm5_A Transcriptional regulat 48.4 67 0.0023 26.4 8.1 41 362-402 53-93 (150)
281 2ooe_A Cleavage stimulation fa 48.1 1.5E+02 0.0052 29.5 12.2 98 144-252 274-385 (530)
282 2hzt_A Putative HTH-type trans 47.9 61 0.0021 25.6 7.4 42 361-402 25-67 (107)
283 3lwf_A LIN1550 protein, putati 47.4 31 0.0011 30.0 5.9 45 363-407 44-88 (159)
284 3jw4_A Transcriptional regulat 47.0 31 0.001 28.5 5.7 41 362-402 56-96 (148)
285 2v79_A DNA replication protein 47.0 25 0.00085 29.8 5.0 43 361-403 49-93 (135)
286 3u2r_A Regulatory protein MARR 46.7 64 0.0022 27.2 7.8 41 362-402 61-101 (168)
287 1xi4_A Clathrin heavy chain; a 45.5 71 0.0024 37.8 9.9 51 147-212 1200-1250(1630)
288 2hr2_A Hypothetical protein; a 45.4 1.5E+02 0.005 25.7 10.0 73 181-254 9-88 (159)
289 2cyy_A Putative HTH-type trans 45.3 26 0.00089 29.6 5.0 39 361-399 19-60 (151)
290 2c2l_A CHIP, carboxy terminus 45.0 71 0.0024 29.3 8.5 64 183-252 4-67 (281)
291 4aik_A Transcriptional regulat 43.9 1.4E+02 0.0048 24.9 10.5 51 358-408 41-94 (151)
292 3t8r_A Staphylococcus aureus C 43.2 45 0.0016 28.2 6.2 43 363-405 28-70 (143)
293 1i1g_A Transcriptional regulat 43.0 26 0.0009 29.0 4.6 36 361-396 16-51 (141)
294 3boq_A Transcriptional regulat 42.6 57 0.002 27.1 6.8 50 359-408 58-110 (160)
295 4hbl_A Transcriptional regulat 42.6 49 0.0017 27.3 6.3 56 353-408 45-103 (149)
296 2f2e_A PA1607; transcription f 41.9 1.1E+02 0.0038 25.7 8.5 42 361-402 35-76 (146)
297 1r1u_A CZRA, repressor protein 41.6 1.2E+02 0.0042 23.6 8.3 37 362-398 38-74 (106)
298 1ylf_A RRF2 family protein; st 41.6 40 0.0014 28.7 5.6 43 362-405 29-71 (149)
299 3lpz_A GET4 (YOR164C homolog); 41.3 1.5E+02 0.0051 29.1 10.3 64 100-165 93-159 (336)
300 3l7w_A Putative uncharacterize 40.9 93 0.0032 24.7 7.5 63 369-431 32-99 (108)
301 2pn6_A ST1022, 150AA long hypo 40.8 36 0.0012 28.5 5.1 42 359-400 13-57 (150)
302 2k9l_A RNA polymerase sigma fa 40.6 25 0.00087 26.7 3.7 27 361-387 46-72 (76)
303 3f6o_A Probable transcriptiona 40.5 65 0.0022 25.9 6.5 37 362-398 30-66 (118)
304 3mkq_A Coatomer beta'-subunit; 39.9 86 0.0029 32.9 9.1 84 151-250 661-750 (814)
305 2gau_A Transcriptional regulat 39.4 77 0.0026 27.8 7.5 52 361-417 178-229 (232)
306 4fx0_A Probable transcriptiona 38.7 1.5E+02 0.0053 24.5 8.9 40 362-402 51-90 (148)
307 3dv8_A Transcriptional regulat 38.6 80 0.0027 27.3 7.4 51 362-417 168-218 (220)
308 2qlz_A Transcription factor PF 38.5 2.3E+02 0.0079 26.0 10.7 47 359-408 174-220 (232)
309 3pqk_A Biofilm growth-associat 38.1 98 0.0033 23.9 7.1 46 362-407 35-80 (102)
310 1ucr_A Protein DSVD; dissimila 38.1 27 0.00093 27.0 3.4 36 359-394 17-53 (78)
311 1z6r_A MLC protein; transcript 37.8 45 0.0015 32.9 6.1 47 349-395 13-62 (406)
312 2fsw_A PG_0823 protein; alpha- 37.2 1.4E+02 0.005 23.3 8.1 42 361-402 36-78 (107)
313 1oyi_A Double-stranded RNA-bin 36.7 22 0.00077 27.8 2.8 32 364-395 31-62 (82)
314 1xi4_A Clathrin heavy chain; a 36.6 1.4E+02 0.0047 35.5 10.4 55 144-210 1107-1161(1630)
315 1ug3_A EIF4GI, eukaryotic prot 36.5 3E+02 0.01 26.5 12.9 43 148-198 17-59 (339)
316 2yin_A DOCK2, dedicator of cyt 35.7 1.3E+02 0.0043 30.6 9.1 104 141-248 34-138 (436)
317 1z91_A Organic hydroperoxide r 34.7 35 0.0012 27.9 4.0 47 361-407 52-101 (147)
318 3e6c_C CPRK, cyclic nucleotide 34.5 29 0.00098 31.4 3.7 64 361-428 175-248 (250)
319 3d0s_A Transcriptional regulat 33.6 83 0.0029 27.5 6.7 50 362-416 176-225 (227)
320 1u2w_A CADC repressor, cadmium 33.5 1.4E+02 0.0047 24.1 7.5 35 362-396 55-89 (122)
321 1klx_A Cysteine rich protein B 33.5 1.1E+02 0.0037 24.8 6.9 60 144-212 59-126 (138)
322 3ffl_A Anaphase-promoting comp 33.4 2.5E+02 0.0085 24.7 12.1 94 116-212 36-151 (167)
323 1okr_A MECI, methicillin resis 33.4 1.8E+02 0.006 22.9 8.4 38 361-398 22-63 (123)
324 2x4h_A Hypothetical protein SS 33.1 1.9E+02 0.0065 23.3 8.5 44 360-407 28-71 (139)
325 2v9v_A Selenocysteine-specific 33.1 1.4E+02 0.0047 24.3 7.5 58 364-424 18-75 (135)
326 1z05_A Transcriptional regulat 33.0 56 0.0019 32.6 5.9 47 349-395 36-85 (429)
327 1y0u_A Arsenical resistance op 32.6 59 0.002 25.0 4.8 43 362-408 42-84 (96)
328 1uly_A Hypothetical protein PH 31.8 80 0.0027 28.1 6.2 35 362-396 32-66 (192)
329 3b02_A Transcriptional regulat 31.8 89 0.0031 26.7 6.4 50 362-416 138-187 (195)
330 2p7v_B Sigma-70, RNA polymeras 31.7 74 0.0025 22.7 5.0 29 361-389 23-51 (68)
331 1r1t_A Transcriptional repress 31.6 2.1E+02 0.007 23.2 9.1 37 362-398 58-94 (122)
332 3k69_A Putative transcription 31.6 77 0.0026 27.4 5.9 44 362-405 27-70 (162)
333 4esf_A PADR-like transcription 31.5 2.1E+02 0.007 23.2 10.3 67 374-440 41-113 (117)
334 1on2_A Transcriptional regulat 31.5 2.1E+02 0.0071 23.2 10.6 44 362-408 21-64 (142)
335 2wpv_A GET4, UPF0363 protein Y 31.4 2.6E+02 0.0089 27.0 10.2 121 19-166 34-158 (312)
336 2oz6_A Virulence factor regula 31.1 44 0.0015 28.8 4.3 33 362-394 163-195 (207)
337 1b89_A Protein (clathrin heavy 30.9 54 0.0018 33.6 5.4 24 229-252 213-236 (449)
338 2pi2_A Replication protein A 3 30.5 11 0.00036 36.0 0.0 37 363-399 224-261 (270)
339 1zu2_A Mitochondrial import re 29.7 2.7E+02 0.0093 24.0 9.2 48 199-252 62-120 (158)
340 4fhn_B Nucleoporin NUP120; pro 29.5 1.3E+02 0.0046 34.1 8.9 104 145-249 845-964 (1139)
341 2fxa_A Protease production reg 28.9 1.1E+02 0.0038 27.1 6.7 47 361-407 60-109 (207)
342 1tc3_C Protein (TC3 transposas 28.8 71 0.0024 20.3 4.1 30 361-390 19-48 (51)
343 3fx3_A Cyclic nucleotide-bindi 28.5 77 0.0026 28.0 5.5 41 363-408 178-218 (237)
344 4ev0_A Transcription regulator 28.3 52 0.0018 28.5 4.3 52 361-417 161-212 (216)
345 2zcw_A TTHA1359, transcription 28.2 54 0.0018 28.3 4.3 50 362-416 145-194 (202)
346 4h7y_A Dual specificity protei 28.1 2.3E+02 0.0077 24.9 8.1 87 119-213 38-124 (161)
347 3ryp_A Catabolite gene activat 28.1 54 0.0019 28.2 4.3 32 363-394 167-198 (210)
348 3tqn_A Transcriptional regulat 28.0 1.3E+02 0.0045 24.0 6.4 47 360-408 29-76 (113)
349 3e97_A Transcriptional regulat 28.0 56 0.0019 28.8 4.5 34 361-394 173-206 (231)
350 4gns_B Protein CSD3, chitin bi 27.5 2.4E+02 0.0081 30.8 10.0 60 182-248 336-396 (754)
351 3iwz_A CAP-like, catabolite ac 27.5 55 0.0019 28.7 4.3 32 363-394 187-218 (230)
352 2jpc_A SSRB; DNA binding prote 27.3 75 0.0026 21.9 4.2 30 360-389 10-39 (61)
353 1ku3_A Sigma factor SIGA; heli 27.1 58 0.002 23.7 3.7 27 362-388 29-55 (73)
354 3cuq_B Vacuolar protein-sortin 27.1 1.7E+02 0.0057 26.8 7.5 45 362-407 167-211 (218)
355 3e4b_A ALGK; tetratricopeptide 26.8 1.2E+02 0.004 30.1 7.1 91 145-251 179-279 (452)
356 2fmy_A COOA, carbon monoxide o 26.7 60 0.0021 28.4 4.4 51 361-416 165-216 (220)
357 3la7_A Global nitrogen regulat 26.5 61 0.0021 29.1 4.5 33 362-394 192-224 (243)
358 3mkq_B Coatomer subunit alpha; 25.6 3.1E+02 0.011 24.2 8.8 82 153-251 16-104 (177)
359 2bgc_A PRFA; bacterial infecti 25.4 1.4E+02 0.0048 26.4 6.7 50 363-417 169-219 (238)
360 3bee_A Putative YFRE protein; 25.2 1.6E+02 0.0055 22.5 6.2 64 183-252 6-72 (93)
361 1ft9_A Carbon monoxide oxidati 25.0 59 0.002 28.5 4.0 33 362-394 162-194 (222)
362 2h09_A Transcriptional regulat 25.0 2.9E+02 0.0098 22.7 8.9 35 362-396 53-87 (155)
363 1q1h_A TFE, transcription fact 24.5 74 0.0025 25.0 4.1 34 363-396 33-66 (110)
364 3dkw_A DNR protein; CRP-FNR, H 24.4 58 0.002 28.5 3.8 34 361-394 176-209 (227)
365 2hoe_A N-acetylglucosamine kin 24.4 58 0.002 31.9 4.2 48 347-395 15-65 (380)
366 1zyb_A Transcription regulator 24.1 61 0.0021 28.8 4.0 33 362-394 185-217 (232)
367 4a5n_A Uncharacterized HTH-typ 24.0 2.3E+02 0.008 23.5 7.4 60 361-420 37-107 (131)
368 2o8x_A Probable RNA polymerase 23.7 73 0.0025 22.5 3.6 29 360-388 28-56 (70)
369 2k9m_A RNA polymerase sigma fa 23.5 66 0.0023 27.1 3.8 27 361-387 37-63 (130)
370 2vn2_A DNAD, chromosome replic 23.3 60 0.0021 26.8 3.5 37 364-400 52-88 (128)
371 3neu_A LIN1836 protein; struct 23.3 1.7E+02 0.0059 23.7 6.4 47 360-408 33-80 (125)
372 3t5x_A PCI domain-containing p 23.1 1.5E+02 0.005 26.6 6.3 64 139-204 11-74 (203)
373 2wte_A CSA3; antiviral protein 22.9 1.6E+02 0.0055 27.2 6.7 59 362-422 165-230 (244)
374 1tty_A Sigma-A, RNA polymerase 22.9 75 0.0026 24.1 3.7 28 362-389 37-64 (87)
375 2fu4_A Ferric uptake regulatio 22.5 1.2E+02 0.0041 22.4 4.8 44 362-406 32-80 (83)
376 2fbk_A Transcriptional regulat 22.5 96 0.0033 26.5 4.8 46 363-408 86-134 (181)
377 3u64_A Protein TP_0956; tetrat 22.4 1.4E+02 0.0049 28.8 6.4 84 144-233 201-291 (301)
378 1b89_A Protein (clathrin heavy 22.4 28 0.00096 35.7 1.4 80 144-250 96-175 (449)
379 3hug_A RNA polymerase sigma fa 22.1 78 0.0027 24.1 3.7 29 360-388 50-78 (92)
380 1ldd_A APC2WHB, anaphase promo 22.1 1.2E+02 0.004 23.2 4.5 20 376-395 46-65 (74)
381 1je8_A Nitrate/nitrite respons 22.0 1.3E+02 0.0046 22.4 5.0 30 360-389 33-62 (82)
382 3i71_A Ethanolamine utilizatio 22.0 1.6E+02 0.0054 21.5 4.9 37 360-396 15-51 (68)
383 3iuo_A ATP-dependent DNA helic 21.7 79 0.0027 26.1 3.9 35 360-394 29-64 (122)
384 2b0l_A GTP-sensing transcripti 21.7 2.5E+02 0.0087 22.1 6.8 49 359-407 38-87 (102)
385 1eij_A Hypothetical protein MT 21.6 32 0.0011 26.8 1.2 22 377-398 36-57 (80)
386 3kcc_A Catabolite gene activat 21.6 81 0.0028 28.7 4.3 32 363-394 217-248 (260)
387 3f6v_A Possible transcriptiona 21.3 3.1E+02 0.01 23.1 7.8 37 362-398 70-106 (151)
388 4g26_A Pentatricopeptide repea 21.3 6.4E+02 0.022 25.4 12.2 137 155-314 83-221 (501)
389 1xmk_A Double-stranded RNA-spe 21.2 1.2E+02 0.0042 23.2 4.5 34 362-395 24-58 (79)
390 3cuq_A Vacuolar-sorting protei 21.0 1.5E+02 0.005 27.7 5.9 44 358-403 163-207 (234)
391 3t72_q RNA polymerase sigma fa 20.8 1.3E+02 0.0043 23.9 4.7 28 362-389 38-65 (99)
392 3ez9_A Para; DNA binding, wing 20.6 2E+02 0.0067 28.2 7.2 56 343-398 22-78 (403)
393 2lfc_A Fumarate reductase, fla 20.3 70 0.0024 27.5 3.4 31 361-391 93-126 (160)
394 3f2g_A Alkylmercury lyase; MER 20.1 88 0.003 28.9 4.1 27 362-388 35-61 (220)
No 1
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-64 Score=524.38 Aligned_cols=357 Identities=18% Similarity=0.269 Sum_probs=286.5
Q ss_pred chhhhcccccccccCCCCcchhhHhhhhhhcCCcceeecH---------HHHHHHHHHhCCCC--hHHHHHHHHHHHHhh
Q 013430 62 FFEIHYFGRKQIFVRPYPFSIFKFFFCAVLSDDVPLVVSR---------QLLQTFAQELGRLE--PETQKEIANYTLAQI 130 (443)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~sr---------~~l~~~~~~l~~l~--~~~~~~~~~~~L~~i 130 (443)
+..+|+.++++- .+++.+.++..+ .+++.+++.+++.| +...+..+..++.++
T Consensus 62 iv~l~~~~~~~~----------------~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~v 125 (445)
T 4b4t_P 62 IVDLLASRNKWD----------------DLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVV 125 (445)
T ss_dssp HHHHHHHHSCHH----------------HHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSS
T ss_pred HHHHHHHhccHH----------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 678899999886 444444444433 27777888887665 444566677788888
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhh
Q 013430 131 QPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 210 (443)
Q Consensus 131 ~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~ 210 (443)
+++++++|.+++|++.+||++|++.|+|.+|+++|+++++|| ++.++..+|+|++++|+|+|++.+||++|+++++||+
T Consensus 126 te~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et-~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 126 TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVET-YGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999998
Q ss_pred hhhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHHHHHHHHHhcCCCCChHH
Q 013430 211 FLVSS-SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSR 289 (443)
Q Consensus 211 ~~~~~-~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~~~~~~~~~i~~~~~~~~Lk~av~~~ILa~~~~~rs~ 289 (443)
..... .++|+++++|+.|+|++++++++|.+||++|++++.++. ...++..+..+|+++++|.||+|++|+|++
T Consensus 205 ~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~-----~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ 279 (445)
T 4b4t_P 205 KKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA-----IKSDEAKWKPVLSHIVYFLVLSPYGNLQND 279 (445)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-----HHSCHHHHHHHHHHHHHHHHHSSCSSTTHH
T ss_pred HhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc-----ccCCHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 76654 478999999999999999999999999999999999864 234678889999999999999999999999
Q ss_pred HHHhhhcCcccccccchHHHHHHHHH-HhcchhhH-HHHHHHhhHHHHhhcCCc----hhHHHHHHHHHHHHHHhhcccc
Q 013430 290 VLATLYKDERCSKLKIYPILQKVYLE-RILRKPEI-DAFAEELKPHQKALLPDN----FTVLDRAMIEHNLLSASKLYTN 363 (443)
Q Consensus 290 ll~~l~kd~~~~~l~~~~~L~k~f~~-~ii~~~el-~~F~~~L~~hq~~l~~D~----~~~L~~~viEhNL~~isk~Ys~ 363 (443)
+++++++|++++++|.|+.|.++|.+ ++++|+.+ ..|...|.+|+.+...++ ++.|+++|+|||++++++||++
T Consensus 280 ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~ 359 (445)
T 4b4t_P 280 LIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSR 359 (445)
T ss_dssp HHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhce
Confidence 99999999999999999999999985 56666654 457777888877655544 7899999999999999999999
Q ss_pred cCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECC---cchHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013430 364 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED---DTEELQQWDQQIVGLCQALNDILDSMAKKGLP 440 (443)
Q Consensus 364 Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~---~~~~l~~W~~~I~~l~~~v~~v~~~I~ke~~~ 440 (443)
|+|++||++||+|++++|+.+++||.+|+|+|+|||++|+|+|+. +++.+++|+.+|+++|+.||+++|+|+||+|-
T Consensus 360 I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~~l~~~v~k~~~lI~kE~m~ 439 (445)
T 4b4t_P 360 ITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIM 439 (445)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC-------------------------------------
T ss_pred eeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999985 45789999999999999999999999999985
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=6.1e-42 Score=351.57 Aligned_cols=316 Identities=15% Similarity=0.234 Sum_probs=257.4
Q ss_pred HHHHHHHHHHhCCCC--hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCC
Q 013430 101 RQLLQTFAQELGRLE--PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID 178 (443)
Q Consensus 101 r~~l~~~~~~l~~l~--~~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~ 178 (443)
-++++.+++.+.++| .+.+.++|..+++|+++++++|.+| ++..+||++|.+.|+|.+|.+++.+++.|+ +++|
T Consensus 58 ~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~--~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~--~~~d 133 (394)
T 3txn_A 58 AKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ--SLEARLIALYFDTALYTEALALGAQLLREL--KKLD 133 (394)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTSS
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hccc
Confidence 348999999999887 5788999999999999999999998 778899999999999999999999999997 5566
Q ss_pred hh-hHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc-cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhh
Q 013430 179 DT-FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYARILD-LKRKFLEAALRYYDISQIQKR 255 (443)
Q Consensus 179 ~~-~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~-~d~~lk~~y~~~~ari~~-~~r~f~eAa~~y~e~~~t~~~ 255 (443)
++ ..+|+++.++++|.+.+|+.+++.++.+|....... ++|.++..++.|.|.+|+ .+|||.+|+++|+|++.++
T Consensus 134 d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f-- 211 (394)
T 3txn_A 134 DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF-- 211 (394)
T ss_dssp CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH--
T ss_pred cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc--
Confidence 65 699999999999999999999999999987776655 799999999999999999 8999999999999999874
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCCCCChHHHHH----hhhcCcccccccchHHHHHHHHHHhcchhhHHHHHHHhh
Q 013430 256 QIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLA----TLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELK 331 (443)
Q Consensus 256 ~~~~~~i~~~~~~~~Lk~av~~~ILa~~~~~rs~ll~----~l~kd~~~~~l~~~~~L~k~f~~~ii~~~el~~F~~~L~ 331 (443)
++.+.+++.++++|+++|+|++..-++...++. ..|.+|+ ++.|..|.++|.+ +++..|...|.
T Consensus 212 ----~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pe---i~~l~~L~~a~~~-----~dl~~f~~iL~ 279 (394)
T 3txn_A 212 ----DSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRD---IDAMKSVAEASHK-----RSLADFQAALK 279 (394)
T ss_dssp ----TTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHH---HHHHHHHHHHHHT-----TCHHHHHHHHH
T ss_pred ----cccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCcc---HHHHHHHHHHHHh-----CCHHHHHHHHH
Confidence 356778889999999999999874333333222 2233443 5678888888875 88999999999
Q ss_pred HHHHhhcCCc-----hhHHHHHHHHHHHHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEE
Q 013430 332 PHQKALLPDN-----FTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 406 (443)
Q Consensus 332 ~hq~~l~~D~-----~~~L~~~viEhNL~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F 406 (443)
.|+..+..|+ +..|+++|++||++.+++||++|+|++||+.||+|++++|+.+++||.+|+|+|+|||++|+|+|
T Consensus 280 ~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~ 359 (394)
T 3txn_A 280 EYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIV 359 (394)
T ss_dssp HSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEE
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEE
Confidence 9988888888 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 407 EDDTEELQQWDQQIVGLCQALNDILDSMA 435 (443)
Q Consensus 407 ~~~~~~l~~W~~~I~~l~~~v~~v~~~I~ 435 (443)
.++...-..|...+ +++..++++++.+.
T Consensus 360 ~~~~~r~~~y~~al-e~l~~ls~vVd~L~ 387 (394)
T 3txn_A 360 FEETPVDKTYERVL-ETIQSMGKVVDTLY 387 (394)
T ss_dssp CCC--------------------------
T ss_pred CCCcchhhHHHHHH-HHHHHHHHHHHHHH
Confidence 86432222222222 44445555554443
No 3
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=323.70 Aligned_cols=280 Identities=15% Similarity=0.141 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc
Q 013430 137 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 216 (443)
Q Consensus 137 fe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~ 216 (443)
.|.++.+...+||++|++.||+++|++.+..++.+| .+.++|+++++.++|+|++.+||..++.+++||...+..+
T Consensus 126 ~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~----~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 126 GELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA----ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp CCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH----TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence 455555678899999999999999999999999988 4668999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHHHHHHHHHhcCCCCChHHHHHhhhc
Q 013430 217 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 296 (443)
Q Consensus 217 ~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~~~~~~~~~i~~~~~~~~Lk~av~~~ILa~~~~~rs~ll~~l~k 296 (443)
+||+++++|+.|+|+++++.|+|.+|+++|++++.+++ ..+...+..++.|+++|+++ +++|+++..++++
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~------~~e~~~~~~~~~y~~l~al~---~~~r~~l~~~v~~ 272 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT------SIELTSYESIATYASVTGLF---TLERTDLKSKVID 272 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC------CSCHHHHHHHHHHHHHHHHH---TTCHHHHHHSSSS
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC------ccchhhHHHHHHHHHHHHHh---cCCHHHHHHHHhc
Confidence 99999999999999999999999999999999998753 33445566677777777777 5699999999998
Q ss_pred Ccccc----ccc---chHHHHHHHHHHhcchhhHHHHHH-HhhHHHHhhcCC-----chhHHHHHHHHHHHHHHhhcccc
Q 013430 297 DERCS----KLK---IYPILQKVYLERILRKPEIDAFAE-ELKPHQKALLPD-----NFTVLDRAMIEHNLLSASKLYTN 363 (443)
Q Consensus 297 d~~~~----~l~---~~~~L~k~f~~~ii~~~el~~F~~-~L~~hq~~l~~D-----~~~~L~~~viEhNL~~isk~Ys~ 363 (443)
+++.. ..| .+..+..+|.. +....|.. .+..+...+..| ++..|.+++++||+..+.+||++
T Consensus 273 ~~~~~~~l~~~p~~~~~~~l~~~~~~-----~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~ 347 (429)
T 4b4t_R 273 SPELLSLISTTAALQSISSLTISLYA-----SDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKT 347 (429)
T ss_dssp SHHHHHGGGSHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHhhccCChhHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhce
Confidence 87642 223 34445666553 44555443 444444444444 47899999999999999999999
Q ss_pred cCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCcc---hHHHHHHHHHHHHHHHHHHHHHHh
Q 013430 364 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDT---EELQQWDQQIVGLCQALNDILDSM 434 (443)
Q Consensus 364 Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~~---~~l~~W~~~I~~l~~~v~~v~~~I 434 (443)
|+|++||++||+|++++|+.+++||.+|+|+|+|||++|+|++.+++ ...++|-.+...++..+.+..+.|
T Consensus 348 I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i 421 (429)
T 4b4t_R 348 LSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAV 421 (429)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-----------------------------
T ss_pred eeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998753 355666666666666666655544
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-32 Score=273.22 Aligned_cols=323 Identities=15% Similarity=0.204 Sum_probs=247.2
Q ss_pred HHHHHHHHHhCCCC--hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCCh
Q 013430 102 QLLQTFAQELGRLE--PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD 179 (443)
Q Consensus 102 ~~l~~~~~~l~~l~--~~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~ 179 (443)
.++...+..+...+ .+...+++..++.+.......+.. +++...||.+|++.|+|.+|.+.++++..++ .+..+.
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~ 171 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK--HSLSIKLATLHYQKKQYKDSLALINDLLREF-KKLDDK 171 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSSCS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH--HHHHHHHHHHHHHccChHHHHHHHHHHHHHH-Hhcccc
Confidence 35666667776654 567788999999998766665654 5889999999999999999999999999998 677777
Q ss_pred hhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 013430 180 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIG 258 (443)
Q Consensus 180 ~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~-~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~~~~~~ 258 (443)
..++++++.++|+|+..+|+.+|+.+++++....... .++.++..++.++|.++.+.++|.+|+.+|.+++.++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~-- 249 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNL-- 249 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHT--
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh--
Confidence 7899999999999999999999999999987766554 4678899999999999999999999999999999875421
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCChHHHHHhhh--cCcccccccchHHHHHHHHHHhcchhhHHHHHHHhhHHHHh
Q 013430 259 DETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLY--KDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKA 336 (443)
Q Consensus 259 ~~~i~~~~~~~~Lk~av~~~ILa~~~~~rs~ll~~l~--kd~~~~~l~~~~~L~k~f~~~ii~~~el~~F~~~L~~hq~~ 336 (443)
........+..++.++++|.++.+........+.... .....+.+|.+..+..+|.+ .++..|+..+..+...
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~l~~~~~~~~~~~~~ 324 (434)
T 4b4t_Q 250 TTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNN-----RSLLDFNTALKQYEKE 324 (434)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHH-----TCHHHHHHHHHHTHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHh-----hhHHHHHHHHHHHHHH
Confidence 2223456778899999999999775444444433321 12233457888899999875 7788899999888888
Q ss_pred hcCCc-----hhHHHHHHHHHHHHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCcch
Q 013430 337 LLPDN-----FTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTE 411 (443)
Q Consensus 337 l~~D~-----~~~L~~~viEhNL~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~~~ 411 (443)
+..|+ +..+.+++++||++.++++|++|++++||++||+|++++|+.+++||.+|+|.|+|||++|+|++.++.+
T Consensus 325 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~ 404 (434)
T 4b4t_Q 325 LMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPN 404 (434)
T ss_dssp HTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC----
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcc
Confidence 77776 5679999999999999999999999999999999999999999999999999999999999999876444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 412 ELQQWDQQIVGLCQALNDILDSMA 435 (443)
Q Consensus 412 ~l~~W~~~I~~l~~~v~~v~~~I~ 435 (443)
....|...+ ..++.++++++.+.
T Consensus 405 ~~~~~~~~l-~~~~~l~~~vd~L~ 427 (434)
T 4b4t_Q 405 QDATYDSAL-ELVGQLNKVVDQLF 427 (434)
T ss_dssp ------------------------
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHH
Confidence 334444444 55666677777654
No 5
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3e-26 Score=240.42 Aligned_cols=286 Identities=17% Similarity=0.164 Sum_probs=190.8
Q ss_pred cchHHHHHHHHHHHHHHHHHhccCHHHHH-----------HHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHH
Q 013430 134 VVSFEEQVLIIREKLADLYESEQQWSKAA-----------QMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNA 202 (443)
Q Consensus 134 ~~sfe~q~a~l~~~LA~iye~~gd~~eAa-----------~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A 202 (443)
++++.-=.|++-...+..||..|+..+.. .++..++-. .-..|..-+.-++..++|+||..+++.+|
T Consensus 173 rrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta--~lr~D~~~qa~l~nllLRnYL~~~~y~qA 250 (523)
T 4b4t_S 173 LRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIA--SLKHDNETKAMLINLILRDFLNNGEVDSA 250 (523)
T ss_dssp ------------------------------CHHHHHHHHTHHHHHHHHC--CSCSSSCHHHHHHHHHHHHHHHSSCSTTH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH--hcccCcchhHHHHHHHHHHHHccCcHHHH
Confidence 34455556677777777788777765532 233333322 34456777899999999999999999999
Q ss_pred HHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHHHHHHHHHhcC
Q 013430 203 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAA 282 (443)
Q Consensus 203 ~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~~~~~~~~~i~~~~~~~~Lk~av~~~ILa~ 282 (443)
..+++|+.......++.+ ..+|+.|.||+++.+++|.+|..++..++...+ ........+..++|++|+|.+|++
T Consensus 251 ~~lvsk~~fP~~~~sn~q-~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap----~~~~a~gfr~~a~K~lI~V~LLlG 325 (523)
T 4b4t_S 251 SDFISKLEYPHTDVSSSL-EARYFFYLSKINAIQLDYSTANEYIIAAIRKAP----HNSKSLGFLQQSNKLHCCIQLLMG 325 (523)
T ss_dssp HHHHHHHCSCTTTSCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS----CSSSCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcCCcccCCHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----cchhhhhHHHHHHHHHHhHHhhcC
Confidence 999999986655444544 489999999999999999999999999987421 123345678899999999999999
Q ss_pred CCCChHHHHHhhhcCcccccccchHHHHHHHHHHhcchhhHHHHHHHhhHHHHhhcCCchh----HHHHHHHHHHHHHHh
Q 013430 283 AGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFT----VLDRAMIEHNLLSAS 358 (443)
Q Consensus 283 ~~~~rs~ll~~l~kd~~~~~l~~~~~L~k~f~~~ii~~~el~~F~~~L~~hq~~l~~D~~~----~L~~~viEhNL~~is 358 (443)
..|+|+.+.+..++. .+..|..|.++|- .+++..|...+.+|+..+..||.. .|+.+|+.++++.++
T Consensus 326 ~iP~r~lf~q~~l~~----~L~pY~~Lv~Avr-----~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis 396 (523)
T 4b4t_S 326 DIPELSFFHQSNMQK----SLLPYYHLTKAVK-----LGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIIS 396 (523)
T ss_dssp CCCCHHHHTTTSCHH----HHHHHHHHHHHHH-----HTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSC
T ss_pred CCCChHHhhchhHHH----HHHHHHHHHHHHH-----cCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHH
Confidence 999998765544331 2555778888875 499999999999999999999943 467899999999999
Q ss_pred hcccccCHHHHHHHhCCC-hHHHHHHHHhhhhcCceEEEeccCCCEEEECC------cchHHHHHHHHHHHHHHHHHHHH
Q 013430 359 KLYTNISFEELGTLLGIA-PQKAEKIASRMIFEDRMRGSIDQVEAVIHFED------DTEELQQWDQQIVGLCQALNDIL 431 (443)
Q Consensus 359 k~Ys~Itl~~La~lLgLs-~eeaE~~ls~MI~~grL~akIDQv~giV~F~~------~~~~l~~W~~~I~~l~~~v~~v~ 431 (443)
+.|++|+++++|..+|++ ++++|.++++||.+|.|.|+|||.+|+|.|.+ +.+++..|+.+|+.+++..|..+
T Consensus 397 ~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d~yst~ep~~af~~RI~~cl~L~ne~v 476 (523)
T 4b4t_S 397 LTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYL 476 (523)
T ss_dssp CCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSCC-------------------------
T ss_pred HHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999994 78899999999999999999999999999975 34678899999988888878777
Q ss_pred HHhh
Q 013430 432 DSMA 435 (443)
Q Consensus 432 ~~I~ 435 (443)
..+.
T Consensus 477 kaMr 480 (523)
T 4b4t_S 477 VSMR 480 (523)
T ss_dssp ----
T ss_pred HHcc
Confidence 6554
No 6
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.1e-23 Score=216.60 Aligned_cols=279 Identities=15% Similarity=0.161 Sum_probs=194.2
Q ss_pred HHHHHHhccCHHHHHHHHhhhhhhc-----cCC-----cCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcccc
Q 013430 148 LADLYESEQQWSKAAQMLSGIDLDS-----GMR-----VIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 217 (443)
Q Consensus 148 LA~iye~~gd~~eAa~~L~~i~~Et-----~~~-----~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~ 217 (443)
+....+...|..+|.+.|.++.... ... .-.....+.+.+.++|+|++.+|...|+.+++++...+...+
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 4455667778999999988764321 000 012235788999999999999999999999999999887764
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHHHHHHHHHhcCCCCChHHHHHhhh
Q 013430 218 --QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLY 295 (443)
Q Consensus 218 --d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~~~~~~~~~i~~~~~~~~Lk~av~~~ILa~~~~~rs~ll~~l~ 295 (443)
++.+...||.+.+.++..+++|.+++..+...+.+.+ .....+++++......+++|++++|.++...+++....
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~---~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~ 238 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE---PSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPI 238 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT---TSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCC
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc---ccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChH
Confidence 4567888888888889999999888888877776532 12346778888888899999999999999999998765
Q ss_pred cCcc--cccccchHHHHHHHHHHhcchhhHHHHHHHhhHHHHhh--cCCchhHHHHHHHHHHHHH--HhhcccccCHHHH
Q 013430 296 KDER--CSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKAL--LPDNFTVLDRAMIEHNLLS--ASKLYTNISFEEL 369 (443)
Q Consensus 296 kd~~--~~~l~~~~~L~k~f~~~ii~~~el~~F~~~L~~hq~~l--~~D~~~~L~~~viEhNL~~--isk~Ys~Itl~~L 369 (443)
.+.. ..+.+.+..|.++|. .+++.+|+..+++|.... .......+.+.++...+.. .+++|++|+++.|
T Consensus 239 i~~L~~~~~~~~l~~Ll~~f~-----~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~i 313 (393)
T 4b4t_O 239 METIVNDSNYDWLFQLLNALT-----VGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDI 313 (393)
T ss_dssp TTSSCSSSSTTHHHHHHHHHH-----HTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHH
T ss_pred HHHhhcCCchHHHHHHHHHHh-----cCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHH
Confidence 4331 233555667787776 488999999888876543 1112334555555555543 4578999999999
Q ss_pred HHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCc-------------chHHHHHHHHHHHHHHHHHHHHHHh
Q 013430 370 GTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD-------------TEELQQWDQQIVGLCQALNDILDSM 434 (443)
Q Consensus 370 a~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~-------------~~~l~~W~~~I~~l~~~v~~v~~~I 434 (443)
|+.+|+|++++|..+++||.+|+|.|+|||++|+|+++.. .+.|..|+.+++++.+.|++....|
T Consensus 314 a~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~~~~~i 391 (393)
T 4b4t_O 314 SKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEARGQSI 391 (393)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC-----------------------------------------
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999988741 2468999999999988888776554
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.81 E-value=1.5e-20 Score=152.24 Aligned_cols=72 Identities=63% Similarity=0.914 Sum_probs=69.4
Q ss_pred cCCchhHHHHHHHHHHHHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCc
Q 013430 338 LPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD 409 (443)
Q Consensus 338 ~~D~~~~L~~~viEhNL~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~ 409 (443)
++|+++.|+++|+||||+.+++||++|++++||++||+|++++|+.+++||.+|+|+|+|||++|+|+|+++
T Consensus 5 ~~~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 5 SSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred CcccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999864
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.67 E-value=7.8e-16 Score=144.48 Aligned_cols=169 Identities=12% Similarity=0.126 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHHHHHHHHHhcCCCCChHHHHHhhhcCccc
Q 013430 221 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERC 300 (443)
Q Consensus 221 lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~~~~~~~~~i~~~~~~~~Lk~av~~~ILa~~~~~rs~ll~~l~kd~~~ 300 (443)
-+..|+-|.|++++.+++|.+|..++.+++.. ++......+..+|+++|.+.+|.+.-|.+.-+ .+ ++
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~------~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll-~~-~~---- 79 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEH------CHRSSQKNKRMILIYLLPVKMLLGHMPTVELL-KK-YH---- 79 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------SCTTCHHHHHHHHHHHHHHHHHTTCEECHHHH-HH-TT----
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH------CCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHh-hh-Cc----
Confidence 35778888999999999999999999999985 45556778899999999999999876765433 22 22
Q ss_pred ccccchHHHHHHHHHHhcchhhHHHHHHHhhHHHHhhcCCchhHHHHHHHHHHHHHHhh------cccccCHHHHHHHhC
Q 013430 301 SKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASK------LYTNISFEELGTLLG 374 (443)
Q Consensus 301 ~~l~~~~~L~k~f~~~ii~~~el~~F~~~L~~hq~~l~~D~~~~L~~~viEhNL~~isk------~Ys~Itl~~La~lLg 374 (443)
+..|..|.+++.. +++..|++.|..|+..+..||...+-.++....++...| .|++|+++.++..++
T Consensus 80 --~~~y~~L~~Avr~-----Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~ 152 (203)
T 3t5x_A 80 --LMQFAEVTRAVSE-----GNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALK 152 (203)
T ss_dssp --CGGGHHHHHHHHH-----TCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHH
T ss_pred --hhHHHHHHHHHHh-----CCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 2248888888764 999999999999999998999666666776666655544 699999999999995
Q ss_pred ------CChHHHHHHHHhhhhcCceEEEeccCCCEEEECC
Q 013430 375 ------IAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 408 (443)
Q Consensus 375 ------Ls~eeaE~~ls~MI~~grL~akIDQv~giV~F~~ 408 (443)
++.+++|-++++||.+|.|+|+||+.+|++++.+
T Consensus 153 ~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk 192 (203)
T 3t5x_A 153 FMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSK 192 (203)
T ss_dssp HTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECS
T ss_pred hcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECC
Confidence 4899999999999999999999999999888765
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.54 E-value=5.3e-13 Score=139.09 Aligned_cols=242 Identities=13% Similarity=0.114 Sum_probs=174.6
Q ss_pred ccCHHHHHHHHhhhhhhc-cCCcCCh------hhH--HHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhc----cccHHHH
Q 013430 155 EQQWSKAAQMLSGIDLDS-GMRVIDD------TFR--LSKCVQIARLYLEDDDAVNAEAFINKASFLVS----SSQQEVL 221 (443)
Q Consensus 155 ~gd~~eAa~~L~~i~~Et-~~~~~~~------~~K--le~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~----~~~d~~l 221 (443)
....++|++++..+=--| ..++.+. +.+ +-+.-...++|+..++...++..++-+...-. +.-+..-
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 346788898888864333 1222111 222 33345668999999999999999986655422 1112345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccCCCC--CCHHHHHHHHHHHHHHHHhcCCCCChHHHHHhhhcCc
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYYDISQI-QKRQIGDET--IDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDE 298 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~e~~~t-~~~~~~~~~--i~~~~~~~~Lk~av~~~ILa~~~~~rs~ll~~l~kd~ 298 (443)
+..|+-|.|++++.+++|.+|..++.+++.. -+. ... .....+..+|+++|.+.+|.+.-|.++- +.+.+ ++
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~---~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~l-l~k~~-~~ 293 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL---PLTNQAITRNGTRILNYMIPTGLILGKMVKWGP-LRPFL-SQ 293 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHH-HGGGS-CH
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc---cccchhhhhHHHHHHHHHHHHHHHcCCCCCHHH-Hcccc-hH
Confidence 7888889999999999999999999999985 321 100 0135677899999999999988788864 33322 12
Q ss_pred cccccc-chHHHHHHHHHHhcchhhHHHHHHHhhHHHHhhcCCch-hHHHHHHHHH---HHHH-----Hhhcc--cccCH
Q 013430 299 RCSKLK-IYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNF-TVLDRAMIEH---NLLS-----ASKLY--TNISF 366 (443)
Q Consensus 299 ~~~~l~-~~~~L~k~f~~~ii~~~el~~F~~~L~~hq~~l~~D~~-~~L~~~viEh---NL~~-----isk~Y--s~Itl 366 (443)
.+. .|..|.++. +.+++..|++.|..|+..+..+|. -.|..++... |+.+ .+.+| ++|++
T Consensus 294 ---~L~~~y~~L~~AV-----r~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l 365 (455)
T 3t5v_B 294 ---ETIDNWSVLYKHV-----RYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPY 365 (455)
T ss_dssp ---HHHHHHHHHHHHH-----HHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEH
T ss_pred ---HHHHHHHHHHHHH-----HhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeH
Confidence 222 255555544 469999999999999999999997 5555544443 3222 35668 89999
Q ss_pred HHHHHHhC---------------------CChHHHHHHHHhhhhcCceEEEeccCCCEEEECCc
Q 013430 367 EELGTLLG---------------------IAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD 409 (443)
Q Consensus 367 ~~La~lLg---------------------Ls~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~ 409 (443)
+.++..++ ++.+++|-+++++|.+|.|+|+||+.+|++++.+.
T Consensus 366 ~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 366 SLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred HHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 99999998 58999999999999999999999999999888764
No 10
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.27 E-value=1.1e-05 Score=76.64 Aligned_cols=203 Identities=12% Similarity=0.064 Sum_probs=125.7
Q ss_pred HHHHhhhcCCHHHHHHHHHHhhhhh-------ccccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 013430 189 IARLYLEDDDAVNAEAFINKASFLV-------SSSQQEVLN--LQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGD 259 (443)
Q Consensus 189 i~RL~L~~~D~~~A~~~l~Ka~~~~-------~~~~d~~lk--~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~~~~~~~ 259 (443)
..+-.++.+|+.++...+.+++... ......++. -..|+..+++... .+..++...|...+..... .
T Consensus 13 ~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~-~~D~~~F~~~~~qLk~~Y~---~ 88 (229)
T 4b0z_A 13 HLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQ-TCDIESFARYASQVIPFYH---D 88 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHS---S
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH---c
Confidence 3455578899999999999864211 112233332 2445555555554 4455556666555543321 1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCChHHHHHhhhcCcccccccchH---HHHHHHHHHhcchhhHHHHHHHhhHHHHh
Q 013430 260 ETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYP---ILQKVYLERILRKPEIDAFAEELKPHQKA 336 (443)
Q Consensus 260 ~~i~~~~~~~~Lk~av~~~ILa~~~~~rs~ll~~l~kd~~~~~l~~~~---~L~k~f~~~ii~~~el~~F~~~L~~hq~~ 336 (443)
...+.+.+..++.+-+++.++.+..++.+..+..+.....+++-|..+ .|.++.. .++...|.+.++.+...
T Consensus 89 ~~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~-----~GnY~kff~l~~~~p~~ 163 (229)
T 4b0z_A 89 SLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVM-----EGAFDKVASMIRSCNFP 163 (229)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHH-----TTCHHHHHHHHHTCCCG
T ss_pred cCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHH-----cCCHHHHHHHHhcCccc
Confidence 122233456688888999888876677777777664432222222222 3444443 47888888776643211
Q ss_pred hcCCchhHHHHHHHHHHHHHHhhcccccCHHHHHHHhCC-ChHHHHHHHHhhhhcCceEEEeccCCCEEEECC
Q 013430 337 LLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 408 (443)
Q Consensus 337 l~~D~~~~L~~~viEhNL~~isk~Ys~Itl~~La~lLgL-s~eeaE~~ls~MI~~grL~akIDQv~giV~F~~ 408 (443)
....-+..|..+++..-+..+++.|++|+++.+++.||+ |+++++..+.+- | =.|+ +|.|+|.+
T Consensus 164 ~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~---g---w~i~--dg~i~F~~ 228 (229)
T 4b0z_A 164 EFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEER---G---WDIR--DGVIYFPK 228 (229)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH---T---CEEE--TTEEECC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc---C---CEEe--CCEEecCC
Confidence 111114568889999999999999999999999999999 578888888763 2 1233 77888863
No 11
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=97.87 E-value=0.00013 Score=66.00 Aligned_cols=127 Identities=12% Similarity=0.122 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCCCChHHHHHhh-hcCcccccccchHHHHHHHHHHhcchhhHHHHHHHhhHHHHhhcCCchhHHHHHH
Q 013430 271 LSAAVTCTILAAAGPQRSRVLATL-YKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAM 349 (443)
Q Consensus 271 Lk~av~~~ILa~~~~~rs~ll~~l-~kd~~~~~l~~~~~L~k~f~~~ii~~~el~~F~~~L~~hq~~l~~D~~~~L~~~v 349 (443)
...+++.++.+|..-.=.+++... .+.=+..+-..+..|.+.|. .+++..|...-..+. .+ ...+.+.+
T Consensus 26 a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~-----~G~~~~y~~~~~~~p-~L----~~~~~~Kl 95 (169)
T 3chm_A 26 LGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFA-----HGTWGDYKCNATRLP-HL----SPDQILKL 95 (169)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHH-----HCCHHHHHHHGGGSC-CC----CHHHHHHH
T ss_pred HHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHh-----cCCHHHHHHhHHhCc-ch----HHHHHHHH
Confidence 345788888888765555555311 11000011233556677775 377777765322111 11 12333444
Q ss_pred HHHHHHHHhhcccccCHHHHHHHhCCC-hHHHHHHHH-hhhhcCceEEEeccCCCEEEEC
Q 013430 350 IEHNLLSASKLYTNISFEELGTLLGIA-PQKAEKIAS-RMIFEDRMRGSIDQVEAVIHFE 407 (443)
Q Consensus 350 iEhNL~~isk~Ys~Itl~~La~lLgLs-~eeaE~~ls-~MI~~grL~akIDQv~giV~F~ 407 (443)
+.--+..++.--+.|+++.|++.++++ ++++|..+. ++|..|-|.|+|||++++|+..
T Consensus 96 rlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~ 155 (169)
T 3chm_A 96 KQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVP 155 (169)
T ss_dssp HHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEE
Confidence 444444443347999999999999999 999999999 9999999999999999998765
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.51 E-value=0.001 Score=55.00 Aligned_cols=112 Identities=11% Similarity=-0.020 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHH
Q 013430 140 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 219 (443)
Q Consensus 140 q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~ 219 (443)
..+.+...+|.+|...|++++|.+.+.....-. ...-+.......+.....+|...+++..|..++.++.......+++
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 345677899999999999999999998754322 1223444567889999999999999999999999988877665666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 220 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 220 ~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
......+...|.++...++|.+|..+|.++...
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 666777778899999999999999999988875
No 13
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.50 E-value=0.0029 Score=52.19 Aligned_cols=134 Identities=10% Similarity=-0.028 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh
Q 013430 116 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE 195 (443)
Q Consensus 116 ~~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~ 195 (443)
.+.-...+...++......- ....+.....+|.+|...|++++|.+.+.....-. ...-+.......+.....++..
T Consensus 25 ~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 25 FRDAVIAHEQRLLIAKEFGD--KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHHH
Confidence 34444555555555432211 12334667889999999999999999998854322 1222344568889999999999
Q ss_pred cCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 196 DDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 196 ~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+++..|..+++++.......+++......+...|.++...++|.+|..+|.++...
T Consensus 102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999988776555555566667778899999999999999999988864
No 14
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.99 E-value=0.019 Score=49.94 Aligned_cols=134 Identities=11% Similarity=0.027 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCC-hh-hHHHHHHHHHHHh
Q 013430 116 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID-DT-FRLSKCVQIARLY 193 (443)
Q Consensus 116 ~~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~-~~-~Kle~~L~i~RL~ 193 (443)
.+.-...+...++..+..... ...+.....+|.+|...|++++|.+.+.....-. +..+ +. .....+.....++
T Consensus 42 ~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKSGDH--TAEHRALHQVGMVERMAGNWDAARRCFLEERELL--ASLPEDPLAASANAYEVATVA 117 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCccHHHHHHHHHHHHHHH
Confidence 344455566666655433222 2334667889999999999999999998754332 2233 23 5788899999999
Q ss_pred hhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 194 LEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 194 L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
...+++..|..++.++.......+++......+...|.++...++|.+|..+|.++....
T Consensus 118 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 999999999999999877665555666666666778999999999999999999998753
No 15
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.96 E-value=0.011 Score=51.59 Aligned_cols=110 Identities=12% Similarity=-0.019 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcccc-HHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ-QEV 220 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~-d~~ 220 (443)
+.+...+|.+|...|++++|...+.....-. ...-+.......+.....+|...+++..|..++.++.......+ ++.
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQA-QKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 4567889999999999999999998865332 22224446788999999999999999999999999887765544 454
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 221 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 221 lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.....+...|.++...++|.+|..+|.++...
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56666778899999999999999999998864
No 16
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.95 E-value=0.046 Score=51.63 Aligned_cols=141 Identities=13% Similarity=0.028 Sum_probs=100.6
Q ss_pred HHhCCCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHH
Q 013430 109 QELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQ 188 (443)
Q Consensus 109 ~~l~~l~~~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~ 188 (443)
..+.+=+-+.-...++..++.. ....-..+.+.....++.+|...|++++|.+.+....... ...-+....+.++..
T Consensus 84 ~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~-~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 84 MLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC-CCCSCTTHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh-cccccHHHHHHHHHH
Confidence 3344444455555555555422 2222233445556678999999999999999998875432 222233356788999
Q ss_pred HHHHhhhcCCHHHHHHHHHHhhhhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 189 IARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 189 i~RL~L~~~D~~~A~~~l~Ka~~~~~~~-~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+..+|...+++.+|..++.++....... +++......+...|.++...++|.+|-.+|.++...
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999987655433 355556666677899999999999999999998875
No 17
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.94 E-value=0.0061 Score=56.61 Aligned_cols=109 Identities=11% Similarity=0.013 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|.+|...|++++|.+.+.....-. ...-+.......+....++|...+++..|..+++++.......+++...
T Consensus 224 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 302 (338)
T 3ro2_A 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 455667777777777777777776643221 1112233456667777777777777777777777766555443344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
...+...|.++...++|.+|..+|.++...
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 445556677777777777777777776653
No 18
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.94 E-value=0.039 Score=52.15 Aligned_cols=139 Identities=13% Similarity=0.036 Sum_probs=98.5
Q ss_pred hCCCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHH
Q 013430 111 LGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIA 190 (443)
Q Consensus 111 l~~l~~~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~ 190 (443)
+.+-+-+.-.+.+...++.... .....+.......++.+|...|++++|.+.+....... ....+.......+..+.
T Consensus 86 ~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg 162 (293)
T 2qfc_A 86 CKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTC-CCSSCTTHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHH
Confidence 3333444445555555554322 33333445556779999999999999999988754322 23334445688999999
Q ss_pred HHhhhcCCHHHHHHHHHHhhhhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 191 RLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 191 RL~L~~~D~~~A~~~l~Ka~~~~~~~-~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+|...+++.+|..+++++....... +++......+...|.++...++|.+|-.+|.++...
T Consensus 163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999987654332 344444456667899999999999999999998874
No 19
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.85 E-value=0.017 Score=45.93 Aligned_cols=104 Identities=11% Similarity=0.022 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcc-ccHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQEV 220 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~-~~d~~ 220 (443)
+..-..+|..+...|++++|...+.....-. ..-...+.....+|...+++..|..+++++...... .+++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 4556789999999999999999998864321 112567888999999999999999999998776543 23444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 221 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 221 lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.....+...|.++...++|.+|...|..+...
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555667899999999999999999998874
No 20
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.83 E-value=0.027 Score=53.27 Aligned_cols=152 Identities=8% Similarity=-0.078 Sum_probs=99.2
Q ss_pred ecHHHHHHHHHHhCCCChHHHHHHHHH---HHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCC
Q 013430 99 VSRQLLQTFAQELGRLEPETQKEIANY---TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMR 175 (443)
Q Consensus 99 ~sr~~l~~~~~~l~~l~~~~~~~~~~~---~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~ 175 (443)
+|++.++.+-..-...+.+....++.. .++++-.+...-+......-...+..+...|+|++|.+.+..+.... .
T Consensus 29 ~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~--~ 106 (293)
T 3u3w_A 29 CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE--E 106 (293)
T ss_dssp SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc--c
Confidence 577766665554444334444444432 12222111111111111222345778889999999999999875432 2
Q ss_pred cCCh-hhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 176 VIDD-TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 176 ~~~~-~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..++ ...+.++..+.-+|+..+++..|..+++++.......+++......+...|.++...++|.+|-.+|.++...
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 107 YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2122 2336677778889999999999999999998865555566555666677899999999999999999999864
No 21
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.79 E-value=0.024 Score=54.62 Aligned_cols=110 Identities=11% Similarity=0.003 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 221 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~l 221 (443)
+.....+|.+|...|++++|...+.....-. ...-+.......+.....+|...|++..|..++.++.......+++..
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 305 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHH
Confidence 3466778888888888888888887754322 112233456778888888999999999999988887776655445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
....+...|.++...++|.+|..+|.++...
T Consensus 306 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566667888888889999998888888765
No 22
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.77 E-value=0.067 Score=50.73 Aligned_cols=109 Identities=13% Similarity=0.014 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCC-hhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHhhhhhccccHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID-DTFRLSKCVQIARLYLED-DDAVNAEAFINKASFLVSSSQQE 219 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~-~~~Kle~~L~i~RL~L~~-~D~~~A~~~l~Ka~~~~~~~~d~ 219 (443)
+.....++.+|...|++++|...+..... . ....+ ...-...+.....+|... +++.+|..+++++.......+++
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~-l-~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQ-I-FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H-HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 45678899999999999999998876432 1 12222 233577888999999996 99999999999998776544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 220 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 220 ~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
......+.-.|.++...++|.+|..+|..+...
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333445566789999999999999999999875
No 23
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.67 E-value=0.01 Score=57.99 Aligned_cols=109 Identities=9% Similarity=-0.029 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|.+|...|++++|.+.+.....-. ...-+.......+....++|...+++..|..+++++.......+++...
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALA-VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 355667777777777777777776543221 1112223456667777777777777777777777766555443344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
...+...|.++...++|.+|..+|.++...
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445555677777777777777777777664
No 24
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.065 Score=49.41 Aligned_cols=110 Identities=16% Similarity=0.082 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCc--CChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc--c
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV--IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS--Q 217 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~--~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~--~ 217 (443)
+.....+|.+|...|++++|.+.+.....-. .+. -+.......+....++|...+++..|..++.++....... +
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIR-EKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567889999999999999999998864321 111 1234578889999999999999999999999987664322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 218 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 218 d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+.......+...|.++...++|.+|...|.++...
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22233455667899999999999999999998864
No 25
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.63 E-value=0.029 Score=46.60 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcc-ccHH
Q 013430 141 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQE 219 (443)
Q Consensus 141 ~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~-~~d~ 219 (443)
.|.....|+..+.+.|+|++|.+.+.... +. ++ .-...|.....+|+..+++..|...++++...... ..++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al-~~-----~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAI-EL-----DP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence 34456789999999999999999998753 21 11 22568888999999999999999999998765433 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 220 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 220 ~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.....-+...|..+...++|.+|-.+|..+...
T Consensus 80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555666667899999999999999999988763
No 26
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.57 E-value=0.028 Score=52.00 Aligned_cols=132 Identities=9% Similarity=-0.051 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh
Q 013430 116 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE 195 (443)
Q Consensus 116 ~~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~ 195 (443)
.+.-...++..++. .+.. ....+.+...+|.+|...|++++|.+.+.....-. ...-++......+....++|..
T Consensus 21 ~~~A~~~~~~al~~-~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 21 CRAGVSFFEAAVQV-GTED---LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-RTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp HHHHHHHHHHHHHH-CCSC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-Cccc---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHH
Confidence 34445555666654 2222 12234667889999999999999999988754322 1222344678899999999999
Q ss_pred cCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhh
Q 013430 196 DDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRK--------------------FLEAALRYYDISQI 252 (443)
Q Consensus 196 ~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~--------------------f~eAa~~y~e~~~t 252 (443)
.+++..|..++.++.......+++......+...|.++...++ |.+|-..|.++...
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887776655666667777788999999999 99999998887764
No 27
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.48 E-value=0.02 Score=54.21 Aligned_cols=106 Identities=9% Similarity=-0.098 Sum_probs=80.1
Q ss_pred HHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHH
Q 013430 146 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 225 (443)
Q Consensus 146 ~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y 225 (443)
...+..+...|++++|.+.+....... .........+..+.....++...+++..|..+++++........++......
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 456788899999999999987654321 1111223466777778899999999999999999987765544444435556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 226 KVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 226 ~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+...|.++...++|.+|-.+|.++...
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~ 184 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677899999999999999999999854
No 28
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.45 E-value=0.056 Score=44.16 Aligned_cols=100 Identities=12% Similarity=-0.116 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|..+...|+|++|.+.+....... -+.......+......|...+++..|..++.++...... ++.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~-- 100 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DVK-- 100 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CHH--
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CHH--
Confidence 345778999999999999999999864221 123346889999999999999999999999998766432 322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|.++...
T Consensus 101 --~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 101 --ALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2345688899999999999999999875
No 29
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.44 E-value=0.067 Score=51.13 Aligned_cols=111 Identities=14% Similarity=0.020 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCCh-hhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccH
Q 013430 140 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD-TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 218 (443)
Q Consensus 140 q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~-~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d 218 (443)
..+.....++.+|...|++++|...+.... +. +....+ ..-...+.....+|.. +|+.+|..+++++.......++
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l-~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~ 150 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKAS-VM-YVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER 150 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHH-HH-HHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HH-HHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC
Confidence 345677889999999999999999888743 22 222233 3457888899999988 9999999999999887765555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 219 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 219 ~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
+......+.-.|.++...++|.+|..+|.++....
T Consensus 151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 55555666678999999999999999999998753
No 30
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.43 E-value=0.011 Score=50.55 Aligned_cols=93 Identities=14% Similarity=0.109 Sum_probs=71.3
Q ss_pred HHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHH
Q 013430 147 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 226 (443)
Q Consensus 147 ~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~ 226 (443)
.|+.++.+.|++++|...++... -.+.+.-..++...++|...+++.+|..+++++...-.. +++ .+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~-------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~~~----a~ 68 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGST-------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--DPK----AH 68 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHS-------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----HH
T ss_pred HhHHHHHHcChHHHHHHHHHHhc-------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----HH
Confidence 47889999999999999888742 133456667788999999999999999999998776443 333 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 227 VCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 227 ~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
...|.++...++|.+|-.+|..+...
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 45788999999999999999999875
No 31
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.40 E-value=0.014 Score=52.98 Aligned_cols=111 Identities=17% Similarity=0.097 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCc--CChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc--
Q 013430 141 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV--IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-- 216 (443)
Q Consensus 141 ~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~--~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~-- 216 (443)
.+.+...+|.+|...|++++|...+.....-. ... -++......+.....+|...+++..|..++.++.......
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIR-EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-HHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 34567889999999999999999998864321 111 2334678899999999999999999999999987765332
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 217 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 217 ~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
++.......+...|.++...++|.+|-.+|.++...
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 221223445566888999999999999999998875
No 32
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.39 E-value=0.047 Score=53.48 Aligned_cols=133 Identities=15% Similarity=0.032 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhc
Q 013430 117 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED 196 (443)
Q Consensus 117 ~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~ 196 (443)
+.-...+..+++...... .+....+.+...||.+|...|++++|.+.+.....-. ...-+.......+.....+|...
T Consensus 158 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 158 HVSMYHILQALDIYQNHP-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-MDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHHHHHHHHTST-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHC
Confidence 333444455555443211 1233456778899999999999999999988754322 12223345778899999999999
Q ss_pred CCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 197 DDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 197 ~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+++.+|..+++++.......+++.. .......|.++...++|.+|..+|.++...
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999998876554344444 555567899999999999999999999875
No 33
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.34 E-value=0.041 Score=52.99 Aligned_cols=132 Identities=9% Similarity=-0.054 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh
Q 013430 116 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE 195 (443)
Q Consensus 116 ~~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~ 195 (443)
.+.-...++.+++. .+.. ....+.+...+|.+|...|++++|...+.....-. ...-++......+.....+|..
T Consensus 25 ~~~A~~~~~~al~~-~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~ 99 (406)
T 3sf4_A 25 CRAGVSFFEAAVQV-GTED---LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-RTIGDQLGEAKASGNLGNTLKV 99 (406)
T ss_dssp HHHHHHHHHHHHHH-CCSC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-Cccc---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHH
Confidence 34445555666654 2222 12335677889999999999999999988754322 1222344678899999999999
Q ss_pred cCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhh
Q 013430 196 DDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRK--------------------FLEAALRYYDISQI 252 (443)
Q Consensus 196 ~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~--------------------f~eAa~~y~e~~~t 252 (443)
.|++..|..++.++.......+++......+...|.++...++ |.+|-..|.++...
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887776555666667777888999999999 99999999888764
No 34
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.27 E-value=0.039 Score=53.98 Aligned_cols=133 Identities=9% Similarity=-0.075 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCC--hhhHHHHHHHHHHHh
Q 013430 116 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID--DTFRLSKCVQIARLY 193 (443)
Q Consensus 116 ~~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~--~~~Kle~~L~i~RL~ 193 (443)
.+.-...++.+++..+... -....+.....+|.+|...|++++|.+.+.....- ....+ .......+.....+|
T Consensus 119 ~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 119 YLSAIKFFKKAESKLIFVK--DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI--YKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHhCccchHHHHHHHHHHHHHH
Confidence 3444555555555443222 12344677899999999999999999998875432 22233 345688899999999
Q ss_pred hhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 194 LEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 194 L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
...+++.+|..+++++.......+++......+...|.++...++|.+|-.+|.++...
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998877666666666777778999999999999999999999874
No 35
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.26 E-value=0.047 Score=53.46 Aligned_cols=132 Identities=11% Similarity=-0.090 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCC--hhhHHHHHHHHHHHhh
Q 013430 117 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID--DTFRLSKCVQIARLYL 194 (443)
Q Consensus 117 ~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~--~~~Kle~~L~i~RL~L 194 (443)
+.-...+..+++...... -....+.....||.+|...|++++|...+.....- ..... .......+.....+|.
T Consensus 118 ~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 118 VEAIGYYREAEKELPFVS--DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI--YQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp HHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCC--ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--HHhCCCchhhHHHHHHHHHHHHH
Confidence 333444455555443221 13445678889999999999999999988875422 22222 2356888999999999
Q ss_pred hcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 195 EDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 195 ~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..+++.+|..++.++.......+++......+...|.++...++|.+|-.+|.++...
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988877655666666777778899999999999999999999874
No 36
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.22 E-value=0.059 Score=43.33 Aligned_cols=101 Identities=10% Similarity=-0.062 Sum_probs=77.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
...+|..+...|+|++|.+.+..+.... -+.....+.+......+...+|+..|..++.++.......+. ...
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~ 77 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---AAG 77 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---cHH
Confidence 3568999999999999999999875322 122344578888999999999999999999998766443211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|.++...
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2234688889999999999999998875
No 37
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.19 E-value=0.02 Score=53.04 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcC--ChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc--c
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVI--DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS--Q 217 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~--~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~--~ 217 (443)
+..-..+|..|...|++++|...+.....-. .+.. +.......+.....+|...+++..|..++.++....... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDL-EKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4557789999999999999999998865321 1111 345678899999999999999999999999987765332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 218 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 218 d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+.......+...|.++...++|.+|..+|.++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 22334555667899999999999999999998875
No 38
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.19 E-value=0.045 Score=53.35 Aligned_cols=132 Identities=10% Similarity=-0.042 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh
Q 013430 116 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE 195 (443)
Q Consensus 116 ~~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~ 195 (443)
.+.-...++..++. .+.. ....+.+...+|.+|...|++++|...+.....-. ...-++......+.....+|..
T Consensus 64 ~~~A~~~~~~al~~-~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~ 138 (411)
T 4a1s_A 64 CRAGVAFFQAAIQA-GTED---LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-KSMNDRLGEAKSSGNLGNTLKV 138 (411)
T ss_dssp HHHHHHHHHHHHHH-CCSC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cccC---hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHccCchHHHHHHHHHHHHHHH
Confidence 44445566666664 2221 22334667889999999999999999988764332 1222345678999999999999
Q ss_pred cCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhh
Q 013430 196 DDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRK-----------------FLEAALRYYDISQI 252 (443)
Q Consensus 196 ~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~-----------------f~eAa~~y~e~~~t 252 (443)
.+++..|..++.++.......+++......+...|.++...++ |.+|..+|.++...
T Consensus 139 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 139 MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999877765544555556666778999999999 99999988887764
No 39
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.13 E-value=0.089 Score=43.61 Aligned_cols=100 Identities=14% Similarity=-0.036 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHH
Q 013430 140 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 219 (443)
Q Consensus 140 q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~ 219 (443)
+.+.....++..|.+.|+|++|.+.+.....- ++ .-.+.+......|...+++..|...++++...-.. ++
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~ 81 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR------DP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK--FI 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--hh
Confidence 33455667899999999999999999875321 11 23578889999999999999999999998766432 32
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 220 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 220 ~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+ .+...|.++...++|.+|-..|..+...
T Consensus 82 ~----a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 82 K----GYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 2345788999999999999999999985
No 40
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.03 E-value=0.088 Score=50.29 Aligned_cols=107 Identities=10% Similarity=0.025 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcC-ChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHH
Q 013430 141 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVI-DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 219 (443)
Q Consensus 141 ~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~-~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~ 219 (443)
.+.....+|.+|+. |++++|...+..... . .... +.......+.....+|...+++..|..++.++.......+++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~-~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAA-V-FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHH-H-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHH-H-HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 35667889999999 999999999887532 2 1111 223457889999999999999999999999988776543333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013430 220 VLNLQYKVCYARILDLKRKFLEAALRYYDIS 250 (443)
Q Consensus 220 ~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~ 250 (443)
.....++...|..+...++|.+|..+|.++.
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344455667777888899999999999888
No 41
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.98 E-value=0.1 Score=47.10 Aligned_cols=111 Identities=16% Similarity=0.079 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCc--CChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcc--c
Q 013430 141 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV--IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS--S 216 (443)
Q Consensus 141 ~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~--~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~--~ 216 (443)
.+.....+|.+|...|++++|.+.+.....-. ... -+.......+.....+|...+++.+|..++.++...... +
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 34567889999999999999999998864321 111 123467889999999999999999999999998766322 1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 217 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 217 ~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
++.......+...|.++...++|.+|...|.++...
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 222223444567899999999999999999998874
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.92 E-value=0.069 Score=46.04 Aligned_cols=98 Identities=9% Similarity=0.011 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 221 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~l 221 (443)
+.+-..||.+|.+.|+|++|.+.+.....- ++ .-.+.+.....+|...+++..|...+.++...... ++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~~- 74 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA------DP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SAE- 74 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hHH-
Confidence 456788999999999999999999986422 11 23578889999999999999999999988766544 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.....|.++...++|..|...|..+...
T Consensus 75 ---~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 102 (184)
T 3vtx_A 75 ---AYYILGSANFMIDEKQAAIDALQRAIAL 102 (184)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2234577888899999999999888875
No 43
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.85 E-value=0.17 Score=39.72 Aligned_cols=99 Identities=10% Similarity=-0.074 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHH
Q 013430 141 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 220 (443)
Q Consensus 141 ~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~ 220 (443)
.+.....+|..+...|++++|...+....... + .-...+.....++...+++..|..++.++...... ++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~ 81 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN------P-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--YSK 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC------C-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--CHH
Confidence 34556789999999999999999998864321 1 12567888999999999999999999998765332 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 221 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 221 lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|..+...
T Consensus 82 ----~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 82 ----AYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3355788899999999999999998875
No 44
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.84 E-value=0.16 Score=49.50 Aligned_cols=106 Identities=7% Similarity=0.030 Sum_probs=87.0
Q ss_pred HHHHHHHHhccCHHHHHHHHhhhhhhccCCcCC-hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccH-HHHHH
Q 013430 146 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVID-DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ-EVLNL 223 (443)
Q Consensus 146 ~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~-~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d-~~lk~ 223 (443)
..+|.++...|++++|.+.+.....-. +..+ +....+++.....+|...+++..|..++.++.......++ .....
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKL--IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTG--GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 348899999999999999998864322 2333 4468999999999999999999999999999888766554 44556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 224 QYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 224 ~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
..+...|.++...++|.+|-.+|.++....
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 214 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMA 214 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 667788999999999999999999998753
No 45
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.81 E-value=0.13 Score=43.71 Aligned_cols=99 Identities=9% Similarity=-0.108 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 221 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~l 221 (443)
+..-..+|..+...|+|++|.+.+.....-. + .-.+++.....+|+..+++..|...+.++...-.. ++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~-- 79 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA------P-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--YS-- 79 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CH--
Confidence 4556789999999999999999998864321 1 13678899999999999999999999998776433 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
..+...|.++...++|.+|..+|..+....
T Consensus 80 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 80 --KAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 234457889999999999999999998863
No 46
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.78 E-value=0.13 Score=39.83 Aligned_cols=97 Identities=15% Similarity=-0.084 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|..+...|++++|.+.+....... + .-.+.+.....++...+++..|...++++...... ++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~-- 73 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD------P-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WGK-- 73 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHH--
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC------C-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--cHH--
Confidence 445778999999999999999999864321 1 12567888999999999999999999998766432 232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|..+...
T Consensus 74 --~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 74 --GYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 2345678888899999999999988874
No 47
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.71 E-value=0.25 Score=51.54 Aligned_cols=135 Identities=10% Similarity=0.057 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChh--hHHHHHHHHHHHh
Q 013430 116 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT--FRLSKCVQIARLY 193 (443)
Q Consensus 116 ~~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL~ 193 (443)
.+.-..+++.+|+.-...-..-.-..+.....||.+|...|+|++|...++... +...+.++.. .-+..+...+.+|
T Consensus 325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-~i~~~~lG~~Hp~~a~~l~nLa~~~ 403 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV-DGYMKLYHHNNAQLGMAVMRAGLTN 403 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 445566777777654332222333456778999999999999999999887743 2212333443 4688899999999
Q ss_pred hhcCCHHHHHHHHHHhhhhhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 194 LEDDDAVNAEAFINKASFLVSS---SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 194 L~~~D~~~A~~~l~Ka~~~~~~---~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
...|++..|..++.||...... .++|...- .....+..++..+.|.+|-..|+.+-..
T Consensus 404 ~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~-~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 404 WHAGHIEVGHGMICKAYAILLVTHGPSHPITKD-LEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998766543 34565433 2356677788889999999999887653
No 48
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.70 E-value=0.075 Score=42.38 Aligned_cols=95 Identities=9% Similarity=-0.073 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
-..+|..+...|++++|.+.+...... ++ .-.+.+.....+|...+++..|..++.++...... ++.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~------~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~---- 85 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR------NP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--FIK---- 85 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT------CT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--CHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--chH----
Confidence 467899999999999999999886421 11 12678899999999999999999999998775432 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|.++...
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3345688899999999999999998874
No 49
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.70 E-value=0.071 Score=50.56 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCC-hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID-DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 220 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~-~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~ 220 (443)
+..-.+.+.+|...|+|++|.+.+.... +. ....+ ...-...+.....+|...|++..|..+++++.......+++.
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al-~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 114 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAA-DY-QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR 114 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHH-HH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH-HHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3455667889999999999999987643 22 22222 334578899999999999999999999999988776555665
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 013430 221 LNLQYKVCYARILDLK-RKFLEAALRYYDISQIQ 253 (443)
Q Consensus 221 lk~~y~~~~ari~~~~-r~f~eAa~~y~e~~~t~ 253 (443)
.....+.-.|.++... ++|.+|-.+|.++....
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~ 148 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWY 148 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 5555666788899987 99999999999998753
No 50
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.15 Score=41.21 Aligned_cols=99 Identities=11% Similarity=-0.099 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 221 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~l 221 (443)
+..-..+|..+...|+|++|...+.....-. + .-.+.+......|...+++..|...++++...-.. ++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~- 73 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA------P-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVR- 73 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------C-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHH-
Confidence 3445778999999999999999998854221 1 12478999999999999999999999998776433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
.+...|.++...++|.+|-..|..+....
T Consensus 74 ---~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 74 ---AYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 23457888999999999999999988753
No 51
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.054 Score=53.30 Aligned_cols=109 Identities=7% Similarity=0.022 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.+...++.++...|++++|.+.+.....-+ ...........++...+++|...|+|..|..++.++.......++....
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFA-KREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHH-HHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 456778899999999999999888754332 1222333578889999999999999999999999987776665555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..++...|+++...++|..|-..|..+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 788899999999999999999999888764
No 52
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.54 E-value=0.18 Score=43.65 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhccccc-----hHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHH
Q 013430 118 TQKEIANYTLAQIQPRVV-----SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARL 192 (443)
Q Consensus 118 ~~~~~~~~~L~~i~~~~~-----sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL 192 (443)
...++...+.++++.+.. ...-........+|..+...|++++|.+.+.....- ++ .-.++|......
T Consensus 7 ~~~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~P-~~~~~~~~lg~~ 79 (151)
T 3gyz_A 7 ENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY------DF-YNVDYIMGLAAI 79 (151)
T ss_dssp --CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHH
Confidence 334444555555544433 233334456788999999999999999999986422 11 235678889999
Q ss_pred hhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 193 YLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 193 ~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
|...+++..|...+.|+...-.. +++. +...|..+...++|.+|-.+|..+...
T Consensus 80 ~~~~g~~~~Ai~~~~~al~l~P~--~~~~----~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 80 YQIKEQFQQAADLYAVAFALGKN--DYTP----VFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSS--CCHH----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCC--CcHH----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999887654 3332 335688899999999999999999885
No 53
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.45 E-value=0.18 Score=41.82 Aligned_cols=98 Identities=14% Similarity=-0.086 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 221 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~l 221 (443)
+..-..+|..+...|++++|.+.+....... + .-.+.+.....++...+++..|..++.++...... ++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~- 82 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN------P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIK- 82 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH-
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHH-
Confidence 4556789999999999999999998864321 1 12678889999999999999999999998776432 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|..+...
T Consensus 83 ---~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 83 ---GYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2345788889999999999999998875
No 54
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.31 E-value=0.061 Score=45.87 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 221 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~l 221 (443)
......||.+|.+.|+|++|.+.+.....- ++ .-.+.|.....+|...+++..|...++++...-.. +++.
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~------~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~ 101 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINV------QE-RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT--QKDL 101 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC--CHHH
Confidence 344578999999999999999999885421 11 22578899999999999999999999998776443 3432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYYD-ISQI 252 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~e-~~~t 252 (443)
+...|.++...++|.+|+..|++ +...
T Consensus 102 ----~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 102 ----VLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp ----HHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 23468888889999999998864 5553
No 55
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.29 E-value=0.24 Score=43.51 Aligned_cols=105 Identities=10% Similarity=-0.066 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCc------CC---hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhh
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV------ID---DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 212 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~------~~---~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~ 212 (443)
+.....+|..+...|+|++|.+.+.....-..... .+ ...+..++.....+|+..+++..|..+++++...
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34456789999999999999999988643210000 00 0113588999999999999999999999998776
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 213 VSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 213 ~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
... ++ ..+...|.++...++|.+|...|..+...
T Consensus 118 ~p~--~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKN--NV----KALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Ccc--cH----HHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 332 22 22345788899999999999999998875
No 56
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.14 Score=45.73 Aligned_cols=103 Identities=8% Similarity=-0.121 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc-cHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEV 220 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~-~d~~ 220 (443)
+..-..+|..+...|++++|.+.+...... . ...+.+......|...+++..|..++.++....... +++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL--H------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--h------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 455678999999999999999999886432 1 225688999999999999999999999987765432 2444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 221 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 221 lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.....+...|.++...++|.+|...|.++...
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 108 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44566677899999999999999999998874
No 57
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.23 E-value=0.41 Score=42.66 Aligned_cols=101 Identities=10% Similarity=0.028 Sum_probs=80.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcccc-HHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ-QEVLNL 223 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~-d~~lk~ 223 (443)
...+|..|...|++++|.+.+...... + ..-.+.+.....+|...+++..|...++++.......+ .+....
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~al~~------~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 117 (228)
T 4i17_A 45 AYNCGVCADNIKKYKEAADYFDIAIKK------N-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYA 117 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT------T-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh------C-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 455899999999999999999886421 1 12567899999999999999999999999887765422 122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 224 QYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 224 ~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..+...|.++...++|.+|-..|..+...
T Consensus 118 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 118 IYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 55677899999999999999999999873
No 58
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.23 E-value=0.22 Score=40.24 Aligned_cols=98 Identities=11% Similarity=-0.050 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
..-..+|..+...|+|++|...+.....-. + .-.+++.....++...+++..|...+.++...... ++.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~-- 78 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN------P-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVK-- 78 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH--
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC------c-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--hHH--
Confidence 445789999999999999999998854321 1 12568899999999999999999999998776433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
.+...|.++...++|.+|-..|..+....
T Consensus 79 --~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 79 --AHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 34457888999999999999999988753
No 59
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.21 E-value=0.2 Score=38.99 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|..+...|++++|.+.+....... + .-.+.+...+.++...+++..|..+++++...... ++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~-- 78 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD------P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAE-- 78 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------c-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHH--
Confidence 445678999999999999999998865321 1 12467888899999999999999999998765332 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|.++...
T Consensus 79 --~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 79 --AWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2345688888899999999999988874
No 60
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.17 E-value=0.11 Score=44.06 Aligned_cols=105 Identities=11% Similarity=-0.031 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhcc----CCcCC-------hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhh
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSG----MRVID-------DTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 210 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~----~~~~~-------~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~ 210 (443)
+..-..+|..+...|+|.+|...+.....-.. ....+ +.....++......|+..+++..|....+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34456789999999999999998877542210 00011 33467899999999999999999999999987
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 211 FLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 211 ~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..-.. ++. .+...|..+...++|.+|...|..+...
T Consensus 91 ~~~p~--~~~----a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET--NEK----ALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc--chH----HHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 76332 222 2345688899999999999999999875
No 61
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.13 E-value=0.3 Score=44.72 Aligned_cols=104 Identities=8% Similarity=-0.026 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|..+...|+|++|.+.+..+.... -+.....+.+.....+|...+++..|...++++.......+.. -.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~ 90 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV-PQ 90 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH-HH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh-HH
Confidence 346789999999999999999999975332 1223457889999999999999999999999987775432211 11
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhh
Q 013430 223 LQYKVCYARILDL--------KRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 223 ~~y~~~~ari~~~--------~r~f~eAa~~y~e~~~t~ 253 (443)
. +...|..+.. .++|.+|-..|.++....
T Consensus 91 a--~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 91 A--EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp H--HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 2 2346777887 899999999999998763
No 62
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.17 Score=45.11 Aligned_cols=109 Identities=10% Similarity=-0.005 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc------
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS------ 216 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~------ 216 (443)
.....+|.+|...|++++|.+.+.....-.....-+.......+.....+|...+++..|..+++++.......
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 118 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKL 118 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHH
Confidence 45678999999999999999999886432100001222348899999999999999999999999987643210
Q ss_pred ---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 217 ---------------QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 217 ---------------~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+|. ....+...|.++...++|.+|...|.++...
T Consensus 119 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 0111 1233456788888999999999999998875
No 63
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.97 E-value=0.078 Score=52.25 Aligned_cols=101 Identities=10% Similarity=0.008 Sum_probs=75.3
Q ss_pred HHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHH-HHHHH
Q 013430 146 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE-VLNLQ 224 (443)
Q Consensus 146 ~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~-~lk~~ 224 (443)
..+|.+++..|++++|.+.+... ++. + +...-++.++..+++++..|+...|+..+++....-.. ..| +-...
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~-i~~--~--~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d-~~~~~d~~l 177 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEG-IDN--D--EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED-TVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-HTS--S--CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH-HHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-hcc--C--CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-ccccchHHH
Confidence 57999999999999999999884 221 1 11468999999999999999999999999987554220 001 12233
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhh
Q 013430 225 YKVCYARILDLKR--KFLEAALRYYDISQI 252 (443)
Q Consensus 225 y~~~~ari~~~~r--~f~eAa~~y~e~~~t 252 (443)
.....|-+....+ ++.+|...|-|+...
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~ 207 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 4455676666666 999999999998764
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.88 E-value=0.31 Score=40.73 Aligned_cols=98 Identities=7% Similarity=0.058 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 221 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~l 221 (443)
+.....+|..+...|++++|.+.+....... + .....+...+.++...+++..|..+++++...... ++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~- 77 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD------A-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--NVK- 77 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT------S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH-
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------c-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHH-
Confidence 3456778999999999999999998864221 1 12577888899999999999999999998765332 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|..+...
T Consensus 78 ---~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 105 (186)
T 3as5_A 78 ---VATVLGLTYVQVQKYDLAVPLLIKVAEA 105 (186)
T ss_dssp ---HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 2345688889999999999999988875
No 65
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.17 Score=39.23 Aligned_cols=93 Identities=4% Similarity=-0.066 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|..+...|+|++|.+.+.....-. + .-.+.+.....++...+++..|...++++.......+++...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ------P-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 345679999999999999999998864321 1 125678899999999999999999999988776554344444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013430 223 LQYKVCYARILDLKRKFLEA 242 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eA 242 (443)
...+...|..+...+++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHhHhhh
Confidence 44444556666655544443
No 66
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.75 E-value=0.22 Score=43.64 Aligned_cols=102 Identities=12% Similarity=0.028 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcccc-----
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ----- 217 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~----- 217 (443)
.....+|.+|...|++++|.+.+.....-. ..-.+.+.....+|...+++..|...++++.......+
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 110 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHH
Confidence 456789999999999999999888754221 12256788889999999999999999998776543211
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 218 ------QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 218 ------d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
++. ....+...|.++...++|.+|...|..+...
T Consensus 111 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 111 ILGLQFKLF-ACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp GGTBCCEEE-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhccccCcc-chHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 000 1122345788888999999999999988874
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.74 E-value=0.31 Score=40.74 Aligned_cols=98 Identities=11% Similarity=0.028 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.+...+|.++...|++++|.+.+.....-. + .....+...++++...+++..|..+++++...... ++
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~--- 144 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEAN------P-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN--EG--- 144 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------c-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--ch---
Confidence 345678999999999999999998864321 1 12467888899999999999999999998765432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
..+...|.++...++|.+|...|..+....
T Consensus 145 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 145 -KVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 233457888889999999999998887653
No 68
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.71 E-value=0.36 Score=39.42 Aligned_cols=94 Identities=11% Similarity=-0.080 Sum_probs=74.2
Q ss_pred HHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHH
Q 013430 146 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 225 (443)
Q Consensus 146 ~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y 225 (443)
..+|..+.+.|++++|...+...... ++ .-.+.+.....++...+++..|...+.++...-.. +++ .
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~------~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~----~ 87 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK------EP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIA----V 87 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----H
Confidence 46788999999999999999886432 11 23577888999999999999999999998776443 333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 226 KVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 226 ~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+...|.++...++|.+|...|..+...
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345688899999999999999988864
No 69
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=94.62 E-value=0.27 Score=40.91 Aligned_cols=98 Identities=8% Similarity=-0.010 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|..+...|++++|.+.+...... ++ .-.+++.....+|...+++..|...+.++...-.. ++..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~- 88 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML------DH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EPRF- 88 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHH-
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh------CC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcHH-
Confidence 34567899999999999999999886432 11 22567888899999999999999999998776443 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
+...|.++...++|.+|...|..+....
T Consensus 89 ---~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 89 ---PFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2456888999999999999999888753
No 70
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.60 E-value=0.36 Score=43.26 Aligned_cols=99 Identities=15% Similarity=0.111 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.+...+|.+|...|++++|.+.+..... . -........+...+.++...+++..|..+++++...... ++.
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~-~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~-- 176 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQ-D----TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN--QPS-- 176 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT-C----TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHH--
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh-C----ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc--cHH--
Confidence 3456788999999999999999888642 1 012235677888888999999999999999887665432 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|..+...
T Consensus 177 --~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 177 --VALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345678888889999998888887763
No 71
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.58 E-value=0.26 Score=38.60 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=72.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
...+|..+...|++++|.+.+....... + .-...+...++++...+++..|..++.++...... ++.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~---- 70 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD------P-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAE---- 70 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHH----
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC------C-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--chH----
Confidence 4568999999999999999998864321 1 12456778899999999999999999987665332 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|.++...
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2344678888899999999999888764
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.53 E-value=0.31 Score=44.66 Aligned_cols=106 Identities=14% Similarity=0.009 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh--------cCCHHHHHHHHHHhhhhhc
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE--------DDDAVNAEAFINKASFLVS 214 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~--------~~D~~~A~~~l~Ka~~~~~ 214 (443)
.....+|.+|...|+|++|...+..+.... -+.....+.+......+.. .+++..|...++++.....
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQIY----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 456889999999999999999999875331 1122445778888889988 9999999999999877654
Q ss_pred ccc-HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 215 SSQ-QEVLNLQY----------KVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 215 ~~~-d~~lk~~y----------~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..+ .+...... ....|.++...++|.+|-..|.++...
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 422 12111111 134688899999999999999999875
No 73
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.49 E-value=0.51 Score=36.81 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 223 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~ 223 (443)
....+|.++...|++++|.+.+....... + .-...+.....++...+++..|..++.++...... ++.
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~--- 104 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELD------P-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAE--- 104 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHH---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHC------C-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChH---
Confidence 35678999999999999999998864321 1 12456778899999999999999999987665432 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 224 QYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 224 ~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.....|.++...+++.+|...|.++...
T Consensus 105 -~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 105 -AWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp -HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 2234678888899999999999888764
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.35 E-value=0.47 Score=45.65 Aligned_cols=111 Identities=8% Similarity=-0.113 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHH
Q 013430 140 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 219 (443)
Q Consensus 140 q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~ 219 (443)
..+.+...+|.++...|++++|...+....... ...+.......+.....++...+++..|...+.++.......+++
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 345667788999999999999999988754321 222233456677888899999999999999999987776555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 220 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 220 ~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..........|.++...++|.+|-..|.++...
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 555555667888999999999999999998875
No 75
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=94.35 E-value=0.47 Score=40.20 Aligned_cols=97 Identities=8% Similarity=-0.064 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|..+...|++++|...+....... + .-.+.+.....+|...+++..|...++++...-.. ++..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~- 91 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD------H-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--EPRF- 91 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHH-
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC------c-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CchH-
Confidence 345678999999999999999998864221 1 12567788899999999999999999998776433 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+...|.++...++|.+|...|..+...
T Consensus 92 ---~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 92 ---PFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 234688999999999999999998875
No 76
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.34 E-value=0.56 Score=40.66 Aligned_cols=98 Identities=8% Similarity=-0.064 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhc-cCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 144 IREKLADLYESE-QQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 144 l~~~LA~iye~~-gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
....+|.+|... |++++|.+.+..... . -........+....+++...+++..|..++.++...... ++
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~--- 147 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALA-D----PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ--FP--- 147 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHT-S----TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CH---
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHc-C----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--Cc---
Confidence 456789999999 999999999988653 1 112235678889999999999999999999988665432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..+...|.++...++|.+|...|.++...
T Consensus 148 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 148 -PAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23445788889999999999999988874
No 77
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=94.28 E-value=0.14 Score=39.30 Aligned_cols=96 Identities=8% Similarity=-0.091 Sum_probs=73.8
Q ss_pred HHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHH
Q 013430 146 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 225 (443)
Q Consensus 146 ~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y 225 (443)
..+|..+...|++++|...+....... + ...+.+.....++...+++..|..+++++........++. .
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----~ 78 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD------P-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD----V 78 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC------C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH----H
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC------c-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH----H
Confidence 468899999999999999998864321 1 1245788899999999999999999999876543200222 3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 013430 226 KVCYARILDLK-RKFLEAALRYYDISQI 252 (443)
Q Consensus 226 ~~~~ari~~~~-r~f~eAa~~y~e~~~t 252 (443)
+...|.++... ++|.+|..+|..+...
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 34568888889 9999999999998875
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.25 E-value=0.8 Score=43.98 Aligned_cols=130 Identities=12% Similarity=-0.081 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCCh---hhHHHHHHHHHHHhh
Q 013430 118 TQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD---TFRLSKCVQIARLYL 194 (443)
Q Consensus 118 ~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~---~~Kle~~L~i~RL~L 194 (443)
.-...+...++......... ..+.....+|.++...|++++|...+.....-. ..... ......+.....++.
T Consensus 71 ~A~~~~~~al~~~~~~~~~~--~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 71 RSLALMQQTEQMARQHDVWH--YALWSLIQQSEILFAQGFLQTAWETQEKAFQLI--NEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHhccccCcHHHHHHHHHHHHHH
Confidence 33445555555443222222 223556789999999999999999988764322 11111 235566777889999
Q ss_pred hcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 195 EDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 195 ~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..|++..|..++.++.......+++. ....+...|+++...+++.+|...|.++...
T Consensus 147 ~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 147 AWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999877665444433 3344567899999999999999999888764
No 79
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.16 E-value=0.27 Score=44.17 Aligned_cols=99 Identities=10% Similarity=-0.065 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|.+|...|++++|.+.+....... + .-.+.+...+.+|...+++..|..+++++........++
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--- 141 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALASD------S-RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERS--- 141 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------c-CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccH---
Confidence 456789999999999999999998864321 1 125678888999999999999999999987611111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..+...|.++...++|.+|...|.++...
T Consensus 142 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 142 -RVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23445788889999999999999998875
No 80
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.12 E-value=0.47 Score=41.89 Aligned_cols=97 Identities=9% Similarity=0.068 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|.+|...|++++|.+.+....... . .-.+.+...+.++...+++..|..+++++...... ++.
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~-- 160 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG--M-----ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN--DTE-- 160 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--C-----CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--CHH--
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--cHH--
Confidence 446778999999999999999998864321 1 12457888899999999999999999998765432 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|.++...
T Consensus 161 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 161 --ARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp --HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456788899999999999999888874
No 81
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.10 E-value=0.45 Score=45.28 Aligned_cols=93 Identities=14% Similarity=0.045 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 223 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~ 223 (443)
+...+|.+|...|++++|.+.+.. + .-.+.+...+++++..|++..|...++++...-.. +. ..
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~-~-----------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~--~~--~~ 166 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ-G-----------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED--AT--LT 166 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT-C-----------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--HH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC-C-----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC--cH--HH
Confidence 356788888888888888888866 1 22457777788888888888888888887655321 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 224 QYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 224 ~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+-.....++...++|.+|...|.++...
T Consensus 167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 167 QLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 11112223333456777777777777664
No 82
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.06 E-value=0.58 Score=48.72 Aligned_cols=104 Identities=10% Similarity=-0.070 Sum_probs=81.3
Q ss_pred HHHHHHHhccCHHHHHHHHhhhhhhccCCcCChh--hHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhh---ccccHHHH
Q 013430 147 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT--FRLSKCVQIARLYLEDDDAVNAEAFINKASFLV---SSSQQEVL 221 (443)
Q Consensus 147 ~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~---~~~~d~~l 221 (443)
..+.-+...|+|++|..++.....-. .+.+++. .-+..+-..+.+|...|+|..|..+..|+.... +...+|++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~-~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQ-EPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHH-TTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34556778999999999887765332 4555555 478899999999999999999999999876554 33467777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
-..+ .-.|.+|...++|.+|-..|..++..
T Consensus 393 a~~l-~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 393 GMAV-MRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5555 44688899999999999999888864
No 83
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.99 E-value=0.19 Score=45.66 Aligned_cols=98 Identities=14% Similarity=0.008 Sum_probs=73.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
...+|..+...|++++|.+.+....... . .-.+.+.....+|...+++..|..+++++.. .. ++++....
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~ 75 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--Y-----NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KV--NATKAKSA 75 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT--C-----CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TS--CTTTCCHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--C-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cc--CchhHHHH
Confidence 4568889999999999999998864321 1 1123677778889999999999999998776 22 34444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|-..|..+...
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4566788888899999999999888875
No 84
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.93 E-value=0.29 Score=48.68 Aligned_cols=105 Identities=13% Similarity=-0.021 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccC---------CcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhh
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGM---------RVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 212 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~---------~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~ 212 (443)
+.....+|..+...|+|++|.+.+......... ..-.+......+...+.+|+..+++..|..+++++...
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 445678899999999999999998876531100 00023356889999999999999999999999998775
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 213 VSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 213 ~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
-.. +++ .+...|..+...++|.+|...|..+...
T Consensus 303 ~p~--~~~----a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 DPS--NTK----ALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp CTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cch--hHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 332 222 2345688899999999999999999875
No 85
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=93.86 E-value=1.3 Score=37.62 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHH-hhhcCCH--HHHHHHHHHhhhhhccccHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARL-YLEDDDA--VNAEAFINKASFLVSSSQQEV 220 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL-~L~~~D~--~~A~~~l~Ka~~~~~~~~d~~ 220 (443)
....+|.+|...|++++|...+.....-. + .-.+.+.....+ |...+++ ..|..++.++...... ++.
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p-~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~--~~~ 116 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLR------G-ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN--EIT 116 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH------C-SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT--CHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC------C-CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC--cHH
Confidence 45679999999999999999998864321 1 124577788888 8899998 9999999998766432 332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 221 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 221 lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|..+...
T Consensus 117 ----~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 117 ----ALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 2345688899999999999999999875
No 86
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.75 E-value=0.58 Score=43.63 Aligned_cols=99 Identities=10% Similarity=0.047 Sum_probs=78.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
...+|..+...|++++|.+.+....... .-+.....+.+.....++...+++..|..+++++...... ++.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~---- 307 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD--NVN---- 307 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cHH----
Confidence 3456999999999999999999875432 1133446677888999999999999999999998776332 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|..+...
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455788899999999999999999874
No 87
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.75 E-value=0.5 Score=41.73 Aligned_cols=97 Identities=11% Similarity=-0.029 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|.+|...|++++|.+.+....... ....+.+...+++|...+++..|..++.++...... ++.
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~-- 126 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELD-------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME--NGD-- 126 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC--SHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHH--
Confidence 346679999999999999999998864321 123577888999999999999999999998776543 332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|-..|.++...
T Consensus 127 --~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 127 --LFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp --HHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2345788899999999999999998875
No 88
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=93.68 E-value=1.6 Score=38.63 Aligned_cols=69 Identities=7% Similarity=-0.084 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcC-ChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhh
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVI-DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 212 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~-~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~ 212 (443)
.....+|.+|...|++++|.+.+.....-. .... -.....+++.....++...+++.+|...++++...
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 456789999999999999999998864321 1110 01124588999999999999999999999998765
No 89
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=93.64 E-value=1 Score=37.03 Aligned_cols=99 Identities=7% Similarity=-0.122 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.+...+|.++...|++++|.+.+.....-. + .-.+.+.....++...+++..|..++.++...... ++...
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~ 118 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIELD------K-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DKDAK 118 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------c-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHH
Confidence 456789999999999999999998864321 1 12567889999999999999999999998766443 33332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.. ...+..+...++|.+|...|-.....
T Consensus 119 ~~--~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 119 MK--YQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHcccchHHH
Confidence 22 23344466789999998888766543
No 90
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.52 E-value=0.66 Score=40.19 Aligned_cols=96 Identities=14% Similarity=0.037 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|..+...|++++|.+.+....... + ...+.+.....+|...+++..|..++.++...... ++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~-- 77 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD------P-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD--SAE-- 77 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------c-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChH--
Confidence 445667778888888888888777654221 0 11456777777788888888888888776654322 222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 013430 223 LQYKVCYARILDLK-RKFLEAALRYYDISQ 251 (443)
Q Consensus 223 ~~y~~~~ari~~~~-r~f~eAa~~y~e~~~ 251 (443)
.+...|.++... ++|.+|...|..+..
T Consensus 78 --~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 78 --INNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp --HHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 223456677777 788888777777765
No 91
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=93.51 E-value=0.63 Score=45.20 Aligned_cols=107 Identities=18% Similarity=0.047 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhcc-CCcCC-------hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhh
Q 013430 140 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSG-MRVID-------DTFRLSKCVQIARLYLEDDDAVNAEAFINKASF 211 (443)
Q Consensus 140 q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~-~~~~~-------~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~ 211 (443)
..+.....+|..|...|+|++|...+.....-.. ....+ ...+...+.....+|+..+++..|..+++++..
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455678899999999999999999987543210 00011 112478999999999999999999999999877
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 212 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 212 ~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.... ++. .+...|.++...++|.+|...|..+...
T Consensus 225 ~~p~--~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 225 LDSN--NEK----GLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HCTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCC--cHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6433 222 2345688899999999999999999875
No 92
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.51 E-value=0.82 Score=42.60 Aligned_cols=105 Identities=13% Similarity=0.026 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCCh-------hhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD-------TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 216 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~-------~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~ 216 (443)
....+|.+|...|++++|.+.+....... ..... -.+++..+..+..+...+++..|...+.++......
T Consensus 190 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 266 (359)
T 3ieg_A 190 AFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS- 266 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 45678999999999999999888764221 11000 012334556688899999999999999998776544
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 217 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 217 ~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
++......+...|.++...++|.+|...|.++...
T Consensus 267 -~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 267 -VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp -SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55565666677899999999999999999999874
No 93
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.48 E-value=0.33 Score=43.98 Aligned_cols=98 Identities=8% Similarity=-0.111 Sum_probs=77.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
...+|.+|...|++++|.+.+..... . . -+.......+.....+|...+++..|..+++++...... ++.
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~--~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~--~~~---- 109 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFS-K--V-NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT--RLD---- 109 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT-T--S-CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTH----
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh-c--c-CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cHH----
Confidence 45688999999999999999988653 2 1 233345778899999999999999999999998776443 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|-..|.++...
T Consensus 110 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 2345788889999999999999888863
No 94
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=93.39 E-value=0.64 Score=41.89 Aligned_cols=99 Identities=10% Similarity=-0.164 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHH
Q 013430 141 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 220 (443)
Q Consensus 141 ~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~ 220 (443)
.+.....+|..|...|++++|.+.+.....-. + .-.+.+.....+|...+++..|..++.++...... ++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~- 111 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIR------P-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YN- 111 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CT-
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC------C-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc--cc-
Confidence 34567789999999999999999988854221 1 13567888899999999999999999988776433 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 221 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 221 lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..+...|.++...++|.+|...|..+...
T Consensus 112 ---~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 112 ---YAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 23345678888899999999999988875
No 95
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=93.30 E-value=0.67 Score=40.45 Aligned_cols=92 Identities=14% Similarity=0.085 Sum_probs=74.6
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
...+|..+...|+|++|.+.+.... + + ....+.....+|...+++..|..+++++...... ++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-~-------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~---- 72 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-D-------P--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LAV---- 72 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-S-------C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-C-------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chH----
Confidence 4678999999999999999998862 1 1 2468899999999999999999999998766432 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|..+...
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 2345688899999999999999998874
No 96
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.29 E-value=0.34 Score=46.16 Aligned_cols=98 Identities=8% Similarity=-0.068 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 223 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~ 223 (443)
....++.+|...|++++|.+.+..+.... ++.....+..-.+.++...+++..|...++++..... +++.
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p--~~~~--- 201 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQD-----EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS--PTLL--- 201 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC--CCHH---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC--CcHH---
Confidence 45567889999999999999998864321 2222223323334566667899999999998877632 3443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 224 QYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 224 ~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|-..|.++...
T Consensus 202 -~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 202 -LLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445788899999999999999998875
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=93.15 E-value=1.3 Score=43.50 Aligned_cols=139 Identities=9% Similarity=-0.017 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCCh-----hhHHHHHHHHHHHhhhcC--CHHHHHHHHHHhhhhhccc
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD-----TFRLSKCVQIARLYLEDD--DAVNAEAFINKASFLVSSS 216 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~-----~~Kle~~L~i~RL~L~~~--D~~~A~~~l~Ka~~~~~~~ 216 (443)
+...++.+|...|+.+.|.+.++.++- .++ +.-+-++|.++.+.+..+ ++..|-.++........
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p-- 209 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTN------AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP-- 209 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh------cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--
Confidence 467789999999999999999998742 233 456667888886666666 99999999988765543
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC-CCHHHHHHHHHHHHHHHHhcCCCCChHHHHHhhh
Q 013430 217 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDET-IDEEALEQALSAAVTCTILAAAGPQRSRVLATLY 295 (443)
Q Consensus 217 ~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~~~~~~~~~-i~~~~~~~~Lk~av~~~ILa~~~~~rs~ll~~l~ 295 (443)
+|.-...+.. .++..++|.+|-..+..+....+. ....+ .++.+ -.+|..+|.|....+. +-.+++.++.
T Consensus 210 -~~~~~~lLln----~~~~~g~~~eAe~~L~~l~~~~p~-~~~k~~~~p~~-~~~LaN~i~l~~~lgk--~a~~l~~qL~ 280 (310)
T 3mv2_B 210 -TWKTQLGLLN----LHLQQRNIAEAQGIVELLLSDYYS-VEQKENAVLYK-PTFLANQITLALMQGL--DTEDLTNQLV 280 (310)
T ss_dssp -SHHHHHHHHH----HHHHHTCHHHHHHHHHHHHSHHHH-TTTCHHHHSSH-HHHHHHHHHHHHHTTC--TTHHHHHHHH
T ss_pred -CcccHHHHHH----HHHHcCCHHHHHHHHHHHHHhccc-ccccccCCCCC-HHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence 2222222222 588899999998888654432100 00000 01111 3477677777777543 5677788776
Q ss_pred c-Ccc
Q 013430 296 K-DER 299 (443)
Q Consensus 296 k-d~~ 299 (443)
+ +|.
T Consensus 281 ~~~P~ 285 (310)
T 3mv2_B 281 KLDHE 285 (310)
T ss_dssp HTTCC
T ss_pred HhCCC
Confidence 5 444
No 98
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=93.10 E-value=0.36 Score=44.73 Aligned_cols=104 Identities=9% Similarity=0.018 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhcc--CCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSG--MRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 220 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~--~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~ 220 (443)
.+...+|.+|...|++++|.+.+.....-.. ....+.....+.+.....+|...+++..|..+++++...... ++.
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~ 271 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--NAS 271 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CSH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc--chH
Confidence 4466789999999999999999887643220 011111334678899999999999999999999998766433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 221 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 221 lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|..+...
T Consensus 272 ----~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 272 ----TYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred ----HHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 2345688899999999999999988864
No 99
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.01 E-value=0.69 Score=39.48 Aligned_cols=97 Identities=14% Similarity=-0.028 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....||.+|...|++++|...+....... ......+......+...+++..|.....++...... +++
T Consensus 40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~--~~~-- 108 (184)
T 3vtx_A 40 ETLLKLGKTYMDIGLPNDAIESLKKFVVLD-------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV--YAD-- 108 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chH--
Confidence 346779999999999999999998865332 112456777788899999999999999998776543 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.....|.++...++|.+|-..|..+...
T Consensus 109 --~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 109 --AYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 2345688899999999999999998875
No 100
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=92.93 E-value=0.61 Score=47.67 Aligned_cols=103 Identities=11% Similarity=-0.015 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 223 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~ 223 (443)
....++.+|...|++++|.+.+............++....+.+...+.+|...|++..|..+++++...-.. ++
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~---- 550 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN--DA---- 550 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC--CH----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--Ch----
Confidence 356788999999999999999888643210001233344789999999999999999999999998766432 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 224 QYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 224 ~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..+...|.++...++|.+|...|.++...
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 23456788899999999999999999875
No 101
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=92.92 E-value=0.87 Score=43.06 Aligned_cols=98 Identities=11% Similarity=0.004 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.+...+|.+|...|++++|.+.+.....-. + .-.+.+....++|...+++..|..+++++...... ++
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~--- 285 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVR------P-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG--YI--- 285 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------c-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cH---
Confidence 456678999999999999999998854221 1 12467888899999999999999999988665322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
..+...|.++...++|.+|...|..+....
T Consensus 286 -~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 286 -RSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233457888899999999999998888753
No 102
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=92.85 E-value=0.23 Score=38.22 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=45.7
Q ss_pred hhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECC
Q 013430 358 SKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 408 (443)
Q Consensus 358 sk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~ 408 (443)
.|-=+.+.+++||..||++.+++-+-+-.+..+|+|.|.||-....|+..+
T Consensus 16 Ik~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 16 IKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 455678999999999999999999999999999999999999877877654
No 103
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=92.75 E-value=0.9 Score=44.40 Aligned_cols=107 Identities=13% Similarity=-0.000 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCCh------hhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD------TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 216 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~------~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~ 216 (443)
.....+|.+|...|++++|.+.+.....-. ...... -.+.+..+..+..|...+++..|..+++++......
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~- 289 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS- 289 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 345678999999999999999998864221 111000 012233456689999999999999999998775433
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 217 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 217 ~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
++......+.+.|.++...++|.+|-..|.++...
T Consensus 290 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 290 -IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp -SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 56666677788999999999999999999998864
No 104
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=92.75 E-value=0.87 Score=43.39 Aligned_cols=97 Identities=10% Similarity=0.031 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 223 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~ 223 (443)
+...+|.+|...|++++|.+.+.....-. + .-...+.....+|...+++..|..+++++...... ++
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~---- 281 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVR------P-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG--FI---- 281 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ch----
Confidence 45567888888888888888887754221 1 11456777788888888888888888877655322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 224 QYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 224 ~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
..+...|.++...++|.+|...|..+....
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 223446777778888888888888877653
No 105
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.73 E-value=0.41 Score=38.34 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=66.7
Q ss_pred hccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHH
Q 013430 154 SEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARIL 233 (443)
Q Consensus 154 ~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~ 233 (443)
..|++++|...+...... ..++..-.+.+.....+|...+++..|..++.++...... +++ .+...|..+
T Consensus 2 ~~g~~~~A~~~~~~al~~----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~----~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQA----LRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chH----HHHHHHHHH
Confidence 357888999888875421 1235567889999999999999999999999998776543 333 234578899
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 013430 234 DLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 234 ~~~r~f~eAa~~y~e~~~t 252 (443)
...++|.+|-..|..+...
T Consensus 72 ~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.73 E-value=3.3 Score=36.98 Aligned_cols=104 Identities=11% Similarity=-0.037 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhH-HHHHHHHHHHhh------------------hcCCHHHHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR-LSKCVQIARLYL------------------EDDDAVNAEA 204 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~K-le~~L~i~RL~L------------------~~~D~~~A~~ 204 (443)
....+|..|...|+|++|...+..+.... ++... -+.+......+. ..+++.+|..
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 46789999999999999999999975332 11111 223333333333 3678999999
Q ss_pred HHHHhhhhhcccc-HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 205 FINKASFLVSSSQ-QEVLN----------LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 205 ~l~Ka~~~~~~~~-d~~lk----------~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.++++........ .++.. ..+....|.++...++|.+|...|..+...
T Consensus 118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD 176 (225)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 9998877654432 12211 122245688899999999999999999886
No 107
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.57 E-value=1.4 Score=45.14 Aligned_cols=98 Identities=11% Similarity=-0.061 Sum_probs=77.2
Q ss_pred HhccCHHHHHHHHhhhhhhccCCcCChh--hHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhh---ccccHHHHHHHHHH
Q 013430 153 ESEQQWSKAAQMLSGIDLDSGMRVIDDT--FRLSKCVQIARLYLEDDDAVNAEAFINKASFLV---SSSQQEVLNLQYKV 227 (443)
Q Consensus 153 e~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~---~~~~d~~lk~~y~~ 227 (443)
...|+|++|..++.....-. .+.+++. .-+..+-..+.+|...|+|..|..+..|+.... +...+|++-..|.
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~-~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~- 386 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKM-SSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL- 386 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHH-TTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH-
T ss_pred hhccCHHHHHHHHHHHHHHh-hCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH-
Confidence 35689999999988754322 4555555 468889999999999999999999999976654 3346787766664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 228 CYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 228 ~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
-.|.+|...++|.+|-..|..++..
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHH
Confidence 4788999999999999999888864
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.52 E-value=1.2 Score=39.87 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
...+|..+...|+|++|.+.+..+...- -+.....+.++.....|...+|+.+|...++++........... ...
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~-~a~ 81 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRY----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVM 81 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH-HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHH-HHH
Confidence 5678899999999999999999975431 11223457788889999999999999999999876654422110 112
Q ss_pred HHHHHHHHHHH------------------HHHHHHHHHHHHHHHhh
Q 013430 225 YKVCYARILDL------------------KRKFLEAALRYYDISQI 252 (443)
Q Consensus 225 y~~~~ari~~~------------------~r~f~eAa~~y~e~~~t 252 (443)
|. .|..+.. .+++.+|...|.++...
T Consensus 82 ~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 82 YM--RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HH--HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred HH--HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 21 2333322 47899999999888875
No 109
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=92.49 E-value=0.38 Score=44.57 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHhhh
Q 013430 184 SKCVQIARLYLEDDDAVNAEAFINKASF 211 (443)
Q Consensus 184 e~~L~i~RL~L~~~D~~~A~~~l~Ka~~ 211 (443)
..+....+++...+++..|..++.++..
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444444455555555555555544433
No 110
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=92.48 E-value=0.67 Score=43.65 Aligned_cols=97 Identities=11% Similarity=-0.044 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 223 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~ 223 (443)
....+|..+...|+|++|.+.+....... + .-..++.....+|...+++..|...++++...... ++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~--- 73 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN------P-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVK--- 73 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC------S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHH---
Confidence 35678999999999999999998864321 1 13578889999999999999999999998776432 332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 224 QYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 224 ~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
.+...|..+...++|.+|...|..+....
T Consensus 74 -~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 74 -AHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 23456888999999999999999988754
No 111
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=92.46 E-value=0.84 Score=46.43 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhcc-CCcCC-------hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhh
Q 013430 140 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSG-MRVID-------DTFRLSKCVQIARLYLEDDDAVNAEAFINKASF 211 (443)
Q Consensus 140 q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~-~~~~~-------~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~ 211 (443)
..+.....+|..|...|+|.+|...+.....-.. ....+ ...+...|......|+..+++..|..+++++..
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3455677899999999999999999887543210 10011 123478899999999999999999999999877
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 212 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 212 ~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.... ++ ..+...|..+...++|.+|..+|..+...
T Consensus 346 ~~p~--~~----~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LDSA--NE----KGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HSTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCc--cH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6433 22 22344688899999999999999999874
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=92.45 E-value=1.1 Score=39.72 Aligned_cols=95 Identities=13% Similarity=-0.051 Sum_probs=72.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHH----------------HHHHhhhcCCHHHHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQ----------------IARLYLEDDDAVNAEAFINK 208 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~----------------i~RL~L~~~D~~~A~~~l~K 208 (443)
....|..+.+.|++++|...+...... ++ .-.+.+.. ...+|...+++..|...+++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL------NI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------CH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh------CC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 355778888999999999999885421 11 12334444 89999999999999999999
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 209 ASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 209 a~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+...-.. +++ .+...|.++...++|.+|-..|..+...
T Consensus 80 al~~~p~--~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 80 LLQKAPN--NVD----CLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHCTT--CHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCC--CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8776543 332 2344688899999999999999999985
No 113
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=92.37 E-value=0.83 Score=42.10 Aligned_cols=98 Identities=13% Similarity=-0.018 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.+...+|.+|...|++++|.+.+....... + .-.+.+...+.++...+++..|..++.++...... ++.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~-- 241 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELR------P-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG--YVR-- 241 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH--
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC------C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHH--
Confidence 456789999999999999999998864321 1 12467888999999999999999999988665432 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
.+...|.++...++|.+|...|..+....
T Consensus 242 --~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 242 --VMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 23456888889999999999999888753
No 114
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.11 E-value=1.1 Score=44.47 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHhhhhhccccHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE---DDDAVNAEAFINKASFLVSSSQQEV 220 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~---~~D~~~A~~~l~Ka~~~~~~~~d~~ 220 (443)
....+|.+|...|++++|.+.+....... ....+.......+.....++.. .+++..|..+++++...... ++.
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~ 450 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR--SEQ 450 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT--CHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc--cHH
Confidence 45678999999999999999888764322 1111111235588899999999 99999999999998765432 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 221 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 221 lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|...|.++...
T Consensus 451 ----~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 451 ----AKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2345788899999999999999999885
No 115
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.09 E-value=1.1 Score=44.46 Aligned_cols=97 Identities=11% Similarity=0.018 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 221 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~l 221 (443)
+..-..+|..+...|+|++|.+.+....... + ....+...+..|+..+++..|...++++...... ++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~-- 73 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-----E---DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD--YS-- 73 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC--CH--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----c---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH--HH--
Confidence 4456788999999999999999999975432 1 1678999999999999999999999998765432 32
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..+...|.++...++|.+|-..|..+...
T Consensus 74 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 74 --KVLLRRASANEGLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 22345788999999999999999988764
No 116
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=92.03 E-value=1.2 Score=45.34 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhccCH-HHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHH
Q 013430 142 LIIREKLADLYESEQQW-SKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 220 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~-~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~ 220 (443)
+.+...+|..|...|++ ++|.+.+....... + .-.+.+.....+|...+++..|..++.++...-. +.
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~------p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~- 170 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE------P-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK---NK- 170 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC---CH-
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CH-
Confidence 45677899999999999 99999998864321 1 2357899999999999999999999999877642 21
Q ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhh
Q 013430 221 LNLQYKVCYARILDLK---------RKFLEAALRYYDISQI 252 (443)
Q Consensus 221 lk~~y~~~~ari~~~~---------r~f~eAa~~y~e~~~t 252 (443)
..+...|.++... ++|.+|-..|.++...
T Consensus 171 ---~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 171 ---VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp ---HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 3445567788878 9999999999999885
No 117
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.96 E-value=1.1 Score=40.19 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhc-----------cCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhh
Q 013430 144 IREKLADLYESE-----------QQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 212 (443)
Q Consensus 144 l~~~LA~iye~~-----------gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~ 212 (443)
....||.+|... |++++|...+.....- ++ .-.+.+.....++...|++..|...++++...
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV------NP-RYAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh------Cc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 356788888888 9999999999886422 11 23467888899999999999999999998777
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 213 VSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 213 ~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
- . +++. +...|.++...++|.+|-..|..+...
T Consensus 148 ~-~--~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 148 E-D--TPEI----RSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp C-C--CHHH----HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred c-c--chHH----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6 3 4443 235688899999999999999999875
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=91.80 E-value=0.95 Score=43.82 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHH
Q 013430 140 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 219 (443)
Q Consensus 140 q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~ 219 (443)
++..++..+|..+.+.|+|++|.+.+..+... . ..++ .......+|+..++|..|..++.++... +++
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~------~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~ 167 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVA------G-SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW----PDK 167 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT------T-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCH
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------C-CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCc
Confidence 44567888999999999999999999986421 1 2344 5566677999999999999999855332 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013430 220 VLNLQYKVCYARILDLKRKFLEAALRYYDISQ 251 (443)
Q Consensus 220 ~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~ 251 (443)
......+.+.|..+...++|.+|-.+|.++..
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44454556789999999999999999999875
No 119
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=91.75 E-value=1.3 Score=41.41 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=58.9
Q ss_pred HHhcchhhHHHHHHHhhHHHHhhcCCchhHHHHHHHHHHHHHHhhcccccCHHHHHHHhC-CChHHHHHHHHhhhhcCce
Q 013430 315 ERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLG-IAPQKAEKIASRMIFEDRM 393 (443)
Q Consensus 315 ~~ii~~~el~~F~~~L~~hq~~l~~D~~~~L~~~viEhNL~~isk~Ys~Itl~~La~lLg-Ls~eeaE~~ls~MI~~grL 393 (443)
.+.+..++...|.+.+......+ . ....|...+++.=...+++.|++|+++.++++|| ++++++++.+.+- |
T Consensus 106 ~~~L~~~~y~~fW~~l~~~~~l~-~-~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~---G-- 178 (226)
T 1rz4_A 106 GDLLETCHFQAFWQALDENMDLL-E-GITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY---G-- 178 (226)
T ss_dssp HHHHHTTCHHHHHHHSCTTCHHH-H-TSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHH---T--
T ss_pred HHHHHcCCHHHHHHHHhcChhHH-H-HHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHC---C--
Confidence 45565688888888775421111 0 1234778888888888999999999999999995 8998888888772 3
Q ss_pred EEEeccCCCEEEECC
Q 013430 394 RGSIDQVEAVIHFED 408 (443)
Q Consensus 394 ~akIDQv~giV~F~~ 408 (443)
=++| .+|.|.|..
T Consensus 179 -W~vd-~~g~I~~~n 191 (226)
T 1rz4_A 179 -WSAD-ESGQIFICS 191 (226)
T ss_dssp -CEEC-C--CEECCC
T ss_pred -CEEC-CCccEEeCC
Confidence 1244 667777754
No 120
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=91.69 E-value=1.6 Score=33.98 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhh
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 213 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~ 213 (443)
.+...+|.+|...|++++|...+.....-......+.......+.....+|...+++..|..++.++....
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 44678999999999999999999886432211111222348889999999999999999999999987753
No 121
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.62 E-value=1.4 Score=44.82 Aligned_cols=107 Identities=9% Similarity=-0.012 Sum_probs=73.0
Q ss_pred ChHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChh--hHHHHHHHHHHH
Q 013430 115 EPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT--FRLSKCVQIARL 192 (443)
Q Consensus 115 ~~~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL 192 (443)
..+...++++..|+.-..--..-.-..++....||.+|...|+|++|......... ...+.+++. .....+.....+
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~-i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME-PYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-hHHHHcCCCChHHHHHHHHHHHH
Confidence 34455566666665332211222234567788999999999999999999887542 212223333 567889999999
Q ss_pred hhhcCCHHHHHHHHHHhhhhhcc---ccHHHHH
Q 013430 193 YLEDDDAVNAEAFINKASFLVSS---SQQEVLN 222 (443)
Q Consensus 193 ~L~~~D~~~A~~~l~Ka~~~~~~---~~d~~lk 222 (443)
|...+++..|..++.||...... .++|..+
T Consensus 381 ~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 381 QLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 99999999999999998776643 2455443
No 122
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=91.52 E-value=1 Score=41.55 Aligned_cols=103 Identities=10% Similarity=-0.022 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHH--
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV-- 220 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~-- 220 (443)
.....+|.+|...|++++|.+.+.....-. + ...+.+....++|...+++..|..++.++.......+++.
T Consensus 207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 207 QLWNKLGATLANGNRPQEALDAYNRALDIN------P-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------C-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence 346789999999999999999998864221 1 1245788899999999999999999999876654321111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 221 ----LNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 221 ----lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.....+...|.++...+++.+|...|..+...
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 13445567788899999999999888776654
No 123
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=91.44 E-value=2 Score=43.85 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChh--hHHHHHHHHHHHhh
Q 013430 117 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT--FRLSKCVQIARLYL 194 (443)
Q Consensus 117 ~~~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL~L 194 (443)
+.-..+++.+|+.-...-..-.-..+.....||.+|...|+|++|....+... +...+.+++. .-...+.....+|.
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-~i~~~~lG~~Hp~~a~~l~nLa~~~~ 393 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII-KPYSKHYPVYSLNVASMWLKLGRLYM 393 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 44566777777654332222333456778899999999999999999988754 2212233333 56778899999999
Q ss_pred hcCCHHHHHHHHHHhhhhhcc---ccHHHHH
Q 013430 195 EDDDAVNAEAFINKASFLVSS---SQQEVLN 222 (443)
Q Consensus 195 ~~~D~~~A~~~l~Ka~~~~~~---~~d~~lk 222 (443)
..|++..|..++.||...... .++|..+
T Consensus 394 ~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 394 GLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999998776643 3456544
No 124
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=91.41 E-value=0.25 Score=44.72 Aligned_cols=96 Identities=15% Similarity=-0.007 Sum_probs=76.2
Q ss_pred HHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHH
Q 013430 148 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKV 227 (443)
Q Consensus 148 LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~ 227 (443)
++..+...|++++|.+.+..+... ...++....+.+....+.|...+++..|..++.++...... ++. .+.
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~----~~~ 81 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILAS---RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPE----VFN 81 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTS---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHH----HHH
T ss_pred eeeccCccchHHHHHHHHHHHHhc---ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHH----HHH
Confidence 455566789999999999987532 22345678899999999999999999999999998776433 332 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 228 CYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 228 ~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..|.++...++|.+|...|..+...
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~ 106 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLEL 106 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc
Confidence 5788899999999999999999875
No 125
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=91.32 E-value=1.4 Score=42.91 Aligned_cols=97 Identities=12% Similarity=-0.006 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|..|...|++++|.+.+..+.... + .-...+...+..|...+++..|...+.++...-.. ++
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~--- 94 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD------P-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FT--- 94 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------C-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cH---
Confidence 345678999999999999999998865321 1 12677888899999999999999999987665332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..+...|.++...++|.+|...|..+...
T Consensus 95 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 123 (450)
T 2y4t_A 95 -AARLQRGHLLLKQGKLDEAEDDFKKVLKS 123 (450)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33455788888899999999999888763
No 126
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.23 E-value=1.4 Score=44.89 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=78.9
Q ss_pred HHHHHHHhccCHHHHHHHHhhhhhhccCCcCChh--hHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhh---ccccHHHH
Q 013430 147 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT--FRLSKCVQIARLYLEDDDAVNAEAFINKASFLV---SSSQQEVL 221 (443)
Q Consensus 147 ~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~---~~~~d~~l 221 (443)
.+.+ +...|+|++|...+.... +...+.+++. .-+..+-..+.+|...|+|..|..+..|+.... +...+|++
T Consensus 293 ~ie~-~~~~g~~~~a~~~~~~~L-~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 293 KIEE-LKAHWKWEQVLAMCQAII-SSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHH-HHHTTCHHHHHHHHHHHH-TCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHH-HHhhccHHHHHHHHHHHH-HhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 3444 346789999999888754 2323445555 478999999999999999999999999876654 44467877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
-..+. -.|.+|...++|.+|-..|..+...
T Consensus 371 a~~l~-nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 371 GVQVM-KVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHH-HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 66554 4688899999999999999888864
No 127
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.22 E-value=2.1 Score=38.16 Aligned_cols=96 Identities=8% Similarity=-0.139 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 223 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~ 223 (443)
....+|..+...|++++|...+...... ++ .-.+.+.....++...+++..|...++++...-.. +++.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a-- 75 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKE------NP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR--YLGG-- 75 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT------SS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHH--
Confidence 3567899999999999999999885321 11 22567888999999999999999999998776443 3322
Q ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhh
Q 013430 224 QYKVCYARILDLK-----------RKFLEAALRYYDISQI 252 (443)
Q Consensus 224 ~y~~~~ari~~~~-----------r~f~eAa~~y~e~~~t 252 (443)
+...|.++... ++|.+|-..|..+...
T Consensus 76 --~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 113 (217)
T 2pl2_A 76 --YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113 (217)
T ss_dssp --HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence 23457777777 9999999999999875
No 128
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=90.98 E-value=1.8 Score=34.13 Aligned_cols=69 Identities=6% Similarity=0.002 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcc
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 215 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~ 215 (443)
.....+|..|...|++++|.+.+..+.... -+.....+.+....+++...+++..|..+++++......
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRY----PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHC----CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 346789999999999999999998865321 112234678888999999999999999999998776543
No 129
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=90.88 E-value=1.9 Score=33.50 Aligned_cols=66 Identities=15% Similarity=0.088 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcc
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 215 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~ 215 (443)
.....||.+|...|++++|.+.+.....- ++ .-.+.|.....+|...+++..|...++++......
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET------DP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------ST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 45678999999999999999999886422 11 12347888999999999999999999998766543
No 130
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=90.88 E-value=3.6 Score=36.35 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcc
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 215 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~ 215 (443)
.+...||.+|...|++++|...+.....- ++ .-.+.+.....++...|++..|...++++...-..
T Consensus 55 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 55 KLATELALAYKKNRNYDKAYLFYKELLQK------AP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 44556999999999999999999885422 11 22578889999999999999999999998776443
No 131
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=90.49 E-value=1.1 Score=42.25 Aligned_cols=103 Identities=8% Similarity=-0.134 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|.+|...|++++|.+.+.....-. ..-.+.+....++|...+++..|..+++++........++.-.
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 456789999999999999999998864221 1235678899999999999999999999987765543222111
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 -----LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 -----~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
...+...|..+...+++.+|...+......
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 334556788888899999998887665543
No 132
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=90.37 E-value=1.9 Score=40.91 Aligned_cols=95 Identities=7% Similarity=-0.108 Sum_probs=75.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
...+|..+...|++++|.+.+....... + .-.+.+.....+|...+++..|..++.++...... ++.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~---- 134 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD------P-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--NLK---- 134 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC------c-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHH----
Confidence 4568999999999999999999875321 1 22678899999999999999999999998776432 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|-..|..+...
T Consensus 135 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 162 (365)
T 4eqf_A 135 ALMALAVSYTNTSHQQDACEALKNWIKQ 162 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 2345688899999999999999998874
No 133
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=89.99 E-value=1.5 Score=43.76 Aligned_cols=102 Identities=15% Similarity=0.065 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhc----------CCHHHHHHHHHHhhhhh
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED----------DDAVNAEAFINKASFLV 213 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~----------~D~~~A~~~l~Ka~~~~ 213 (443)
+...+|.+|...|++++|.+.+.....-. ....+....+..+.....++... +++..|..+++++....
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLE-EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 34566777777788887777777653221 11111122334455556677777 99999999999987664
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 214 SSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 214 ~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.. ++ ..+...|.++...++|.+|...|..+...
T Consensus 459 p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 459 PR--SE----QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC--CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33 23 23456788999999999999999999885
No 134
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=89.59 E-value=1.1 Score=45.72 Aligned_cols=96 Identities=8% Similarity=-0.014 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 223 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~ 223 (443)
....++..|...|++++|.+.+..+.... . .-...+...+.+|...|++..|..+++++...... ++..
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~-- 477 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLF--Q-----GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY--DPLL-- 477 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT--T-----TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--CHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHH--
Confidence 45678888999999999998888764221 1 11346667778888888888888888887654332 3322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 224 QYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 224 ~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+.+.|.++...++|.+|...|.++...
T Consensus 478 --~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 478 --LNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 356677777788888888887776543
No 135
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=89.59 E-value=3 Score=32.62 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhc
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 214 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~ 214 (443)
.....+|.+|...|++++|.+.+.....- ++ .-.+.+.....+|...+++..|...+.++.....
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDF------DP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH------CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 34678999999999999999999886422 11 2256788889999999999999999999876644
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=89.48 E-value=3.7 Score=39.65 Aligned_cols=122 Identities=15% Similarity=-0.041 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHH
Q 013430 117 ETQKEIANYTLAQIQPRV-------VSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQI 189 (443)
Q Consensus 117 ~~~~~~~~~~L~~i~~~~-------~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i 189 (443)
+.-...+..+++...... .......+.+...||.+|...|+|++|...+.....- ++ .-...+...
T Consensus 164 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p-~~~~a~~~l 236 (336)
T 1p5q_A 164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL------DS-NNEKGLSRR 236 (336)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CcHHHHHHH
Confidence 334455555665442221 1123333567888999999999999999999886422 11 235678899
Q ss_pred HHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 013430 190 ARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAAL-RYYDISQ 251 (443)
Q Consensus 190 ~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~-~y~e~~~ 251 (443)
..+|...+++..|...++++...... ++.. +...+.++...+++.+|.+ .|...+.
T Consensus 237 g~~~~~~g~~~~A~~~~~~al~l~P~--~~~a----~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 237 GEAHLAVNDFELARADFQKVLQLYPN--NKAA----KTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS--CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC--CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877543 3332 2345677778888888844 4444443
No 137
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=89.32 E-value=1.1 Score=44.89 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.+...+|.+|...|++++|.+.+....... . .-.+.+.....+|...+++..|..+++++...... ++..
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~- 380 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLN--P-----ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT--LPEV- 380 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHH-
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHH-
Confidence 456788999999999999999888764321 1 11256777888888999999999999887766433 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
+...|.++...++|.+|...|..+....
T Consensus 381 ---~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 381 ---PTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 2345788888888888888888876543
No 138
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=89.28 E-value=1.6 Score=44.43 Aligned_cols=96 Identities=8% Similarity=-0.039 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhc---------CCHHHHHHHHHHhhhhh
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED---------DDAVNAEAFINKASFLV 213 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~---------~D~~~A~~~l~Ka~~~~ 213 (443)
.....||.+|...|++++|.+.+..... +++. ...+.....+|... +++..|...++++....
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGALT------HCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHT------TCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 3567899999999999999999988642 2233 38889999999999 99999999999988765
Q ss_pred ccccHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhh
Q 013430 214 SSSQQEVLNLQYKVCYARILDLK--------RKFLEAALRYYDISQI 252 (443)
Q Consensus 214 ~~~~d~~lk~~y~~~~ari~~~~--------r~f~eAa~~y~e~~~t 252 (443)
.. ++. .+...|.++... ++|.+|...|..+...
T Consensus 210 p~--~~~----~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 210 VL--DGR----SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp TT--CHH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CC--CHH----HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 43 332 233467777777 9999999999999874
No 139
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=89.16 E-value=1.8 Score=44.71 Aligned_cols=94 Identities=13% Similarity=-0.004 Sum_probs=47.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
...+|..|...|++++|.+.++..... ++ .-.+.+.....+|...+++..|..+++++...... +++
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~---- 92 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLAL------HP-GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE--HPG---- 92 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTT------ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHH----
Confidence 445566666666666666666553211 11 11345555555666666666666666655443221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDISQ 251 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~~ 251 (443)
.+...|.++...++|.+|...|.++..
T Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 93 IALWLGHALEDAGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122345555555555555555555554
No 140
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=89.14 E-value=6.4 Score=36.78 Aligned_cols=96 Identities=10% Similarity=-0.028 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 223 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~ 223 (443)
....+|..+...|++++|...+....... + .-.+.+....++++..|++..|...+.++...-. ++..
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~------P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~~~~-- 186 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS------N-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---DTRY-- 186 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT------T-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---SHHH--
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC------C-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---chHH--
Confidence 35679999999999999999999865321 1 2256788889999999999999999998865532 2211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 224 QYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 224 ~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.....+..+...+++.+|...|..+...
T Consensus 187 -~~~~~~~~l~~~~~~~~a~~~l~~al~~ 214 (287)
T 3qou_A 187 -QGLVAQIELLXQAADTPEIQQLQQQVAE 214 (287)
T ss_dssp -HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhcccCccHHHHHHHHhc
Confidence 1122334466678888888888888764
No 141
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.98 E-value=1.3 Score=32.54 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=54.2
Q ss_pred CChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 177 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 177 ~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+++....+.+......+...+++..|..+++++...... ++. .+...|.++...++|.+|...|.++...
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAE----AWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344456788899999999999999999999998765432 222 2345788899999999999999998875
No 142
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=88.66 E-value=2 Score=42.42 Aligned_cols=107 Identities=12% Similarity=0.065 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhh---hhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc---
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGID---LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS--- 216 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~---~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~--- 216 (443)
++-..||.+|...|++++|.+.++.-. .+. .+.-.+...+..|-....+|...|++..|..+++|+.......
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~-~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQE-HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-SGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456679999999999999999887531 111 1111222346678888999999999999999999876553221
Q ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 217 ---QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 217 ---~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..++... ....+.+....++|.+|-.+|..+...
T Consensus 131 ~~~~~~~~~~--~~g~~~~~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 131 YRIESPELDC--EEGWTRLKCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp SCCCCHHHHH--HHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHH--HHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 1122211 111233344567899999999998875
No 143
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.51 E-value=3.3 Score=41.98 Aligned_cols=106 Identities=10% Similarity=0.066 Sum_probs=79.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCCh---------------------hhHH------------------H-
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD---------------------TFRL------------------S- 184 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~---------------------~~Kl------------------e- 184 (443)
-..|+++|.+.|+.++.++++..++.- ...+++ +..+ .
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPF--LSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTG--GGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999988888888766532 111111 1111 1
Q ss_pred -HHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 185 -KCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 185 -~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+-.+.+.+|++.+||..|...+++........+|....+..+.+.++++...+|+..+-..|..+..+
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 22266889999999999999999888777666677888899999999999999999998888877654
No 144
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=88.20 E-value=2.3 Score=40.87 Aligned_cols=92 Identities=10% Similarity=0.002 Sum_probs=56.8
Q ss_pred HHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHH
Q 013430 148 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKV 227 (443)
Q Consensus 148 LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~ 227 (443)
+|..+...|++++|.+.+..+.... ++ -...+.....+++..+++.+|..+..++...... +++ .+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-----p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~--~~~----~~~ 71 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-----PD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--LAE----AYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----HHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chH----HHH
Confidence 6777888888888888887653221 11 1345666667777777777777777765543221 211 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 228 CYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 228 ~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..|.++...++|.+|-..|..+...
T Consensus 72 ~lg~~~~~~g~~~~A~~~~~~al~~ 96 (388)
T 1w3b_A 72 NLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4566666677777777777666553
No 145
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.94 E-value=5.5 Score=31.38 Aligned_cols=71 Identities=11% Similarity=-0.030 Sum_probs=54.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcc
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 215 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~ 215 (443)
...||..+...|+|..|...+.....-..........+.+++......|...||+..|..+.+++......
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 56899999999999999999987542110011112357889999999999999999999999998765443
No 146
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=87.84 E-value=0.9 Score=44.17 Aligned_cols=106 Identities=9% Similarity=-0.107 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCC----cCC------hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhh
Q 013430 141 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMR----VID------DTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 210 (443)
Q Consensus 141 ~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~----~~~------~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~ 210 (443)
.+.....+|..+...|+|.+|...+.......... ... ...+...++.....|+..++|..|..+++++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556788999999999999999888743211000 000 01123588999999999999999999999987
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 211 FLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 211 ~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..-.. +.. .+...|..+...++|.+|-..|..+...
T Consensus 258 ~~~p~--~~~----a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TEEEK--NPK----ALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHCTT--CHH----HHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HhCCC--CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 65432 222 2345688899999999999999988764
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=87.78 E-value=4 Score=33.19 Aligned_cols=78 Identities=10% Similarity=0.062 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.+...+|.+|...|+|++|.+.+.....-......+.......+......+...+++..|..++.++.... ++++..
T Consensus 43 ~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~---~~~~~~ 119 (127)
T 4gcn_A 43 TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF---RDPELV 119 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCHHHH
T ss_pred HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCHHHH
Confidence 34567999999999999999988764321101111223457789999999999999999999999976542 345543
Q ss_pred H
Q 013430 223 L 223 (443)
Q Consensus 223 ~ 223 (443)
-
T Consensus 120 ~ 120 (127)
T 4gcn_A 120 K 120 (127)
T ss_dssp H
T ss_pred H
Confidence 3
No 148
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=87.49 E-value=2.2 Score=46.48 Aligned_cols=94 Identities=11% Similarity=-0.009 Sum_probs=48.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
-..||.+|.+.|++++|.+.++... +. ++ .-.+.+.....+|...|++..|...++++...-.. +.+
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl-~l-----~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--~~~---- 78 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKAL-EV-----FP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--FAD---- 78 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----
Confidence 3456666666666666666665532 11 00 11344555566666666666666666665444221 221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDISQ 251 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~~ 251 (443)
.+...|.++...++|.+|-.+|..+..
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQ 105 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122345555556666666666655554
No 149
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=87.16 E-value=3.8 Score=42.23 Aligned_cols=98 Identities=11% Similarity=-0.004 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....||.+|...|++++|.+.+.....-. + .-.+.+.....+|...+++..|..+++++...... ++.
T Consensus 58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~-- 126 (568)
T 2vsy_A 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAA------P-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE--EPY-- 126 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH--
Confidence 446789999999999999999998864321 1 12567888999999999999999999998776433 332
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhh
Q 013430 223 LQYKVCYARILDLK---RKFLEAALRYYDISQIQ 253 (443)
Q Consensus 223 ~~y~~~~ari~~~~---r~f~eAa~~y~e~~~t~ 253 (443)
.+...|.++... +++.+|...|.++....
T Consensus 127 --~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 127 --ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp --HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 233467778888 99999999999988753
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=86.81 E-value=8.5 Score=32.04 Aligned_cols=67 Identities=16% Similarity=0.029 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 216 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~ 216 (443)
.+...+|.+|...|++++|...+.....- ++ .-.+.+.....+|...+++..|..+++++.......
T Consensus 46 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 46 IYLSNRAAAYSASGQHEKAAEDAELATVV------DP-KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 45678999999999999999999885421 11 126788899999999999999999999988776553
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=86.70 E-value=4.4 Score=35.08 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.+...+|..|...|+|++|.+.+.....- ++ .-...+.....+|...+++..|..++.++...... +++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~ 159 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI------DK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN--NLDIR 159 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh------Cc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHH
Confidence 56678999999999999999999886422 11 22567889999999999999999999998776433 44433
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013430 223 LQYKVCYARILDLKRKFLEAA 243 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa 243 (443)
. ..+.++...+++.++-
T Consensus 160 ~----~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 160 N----SYELCVNKLKEARKKD 176 (198)
T ss_dssp H----HHHHHHHHHHHHHC--
T ss_pred H----HHHHHHHHHHHHHHHH
Confidence 3 3455566666676666
No 152
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=86.68 E-value=6.6 Score=29.47 Aligned_cols=86 Identities=13% Similarity=-0.030 Sum_probs=62.2
Q ss_pred HHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHH-HHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 146 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLS-KCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 146 ~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle-~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
..+|..+...|++++|.+.+...... ++.. .+ .+.....+|...+++..|...+.++...... ++....
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~- 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT------EPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD--SPALQA- 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH------CSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------CCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHH-
Confidence 45788999999999999999886432 1111 34 7888899999999999999999998776543 222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+.+.+|..+|..+...
T Consensus 74 -----------~~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 74 -----------RKMVMDILNFYNKDMYN 90 (99)
T ss_dssp -----------HHHHHHHHHHHCCTTHH
T ss_pred -----------HHHHHHHHHHHHHHhcc
Confidence 16677777777666654
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=86.56 E-value=7.9 Score=29.65 Aligned_cols=65 Identities=15% Similarity=-0.024 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhc
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 214 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~ 214 (443)
.....+|.+|...|++++|.+.+....... + .-...+....++|...+++..|..++.++.....
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICID------P-AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcC------c-cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 456789999999999999999998864321 1 1256788899999999999999999999876643
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=86.50 E-value=3.3 Score=32.83 Aligned_cols=64 Identities=9% Similarity=-0.093 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhh
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 213 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~ 213 (443)
.+...+|..|...|++++|...+.....- ++ .-.+.+.....++...+++..|...+.++....
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEK------DP-NFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CC-CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 45678999999999999999999885421 11 125678899999999999999999999987765
No 155
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=86.42 E-value=3 Score=45.43 Aligned_cols=97 Identities=12% Similarity=0.021 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....||.+|.+.|++++|...++... +. ++ .-.+.+.....++...+++..|...++|+...-.. +.+.
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al-~l-----~P-~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~--~~~a- 113 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAI-RI-----SP-TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA--FADA- 113 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH-
Confidence 345678999999999999999888743 21 11 22567888899999999999999999988766432 3222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+...|.++...++|.+|-.+|..+...
T Consensus 114 ---~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 114 ---HSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344688888899999999999888875
No 156
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=86.40 E-value=2.5 Score=40.59 Aligned_cols=96 Identities=17% Similarity=0.049 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....++.+|...|++++|.+.+.....-. + .-.+.+.....++...+++..|...++++...... +++.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~- 307 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ------P-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT--HADS- 307 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC------S-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT--CHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHH-
Confidence 445678888888888888888887754211 1 11345777777888888888888888877655322 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQ 251 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~ 251 (443)
+...|.++...++|.+|-..|.++..
T Consensus 308 ---~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 308 ---LNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp ---HHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23456667777777777777766654
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=86.14 E-value=3.4 Score=31.05 Aligned_cols=66 Identities=11% Similarity=-0.039 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHhhhhhc
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED-DDAVNAEAFINKASFLVS 214 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~-~D~~~A~~~l~Ka~~~~~ 214 (443)
....+|.+|...|++++|.+.+....... +.....+.+.....++... +++..|..+++++.....
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVI-----EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-----cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 45689999999999999999998864321 1112467889999999999 999999999999876543
No 158
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=85.95 E-value=16 Score=31.98 Aligned_cols=111 Identities=14% Similarity=-0.014 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCc-----CCh-hhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhc--
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV-----IDD-TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS-- 214 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~-----~~~-~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~-- 214 (443)
..-..++..+.+.|+|++|...+....--. ... .+. ......|......+...+++..|-...+++...+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345678889999999999998887643221 110 010 12345899999999999999999999999887621
Q ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013430 215 ---SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 254 (443)
Q Consensus 215 ---~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~~ 254 (443)
.+++.+.-+.=+...|..+...++|.+|-.+|..+....+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 1112221111113467889999999999999999998643
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=85.75 E-value=3.3 Score=34.65 Aligned_cols=81 Identities=10% Similarity=0.018 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHH
Q 013430 140 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 219 (443)
Q Consensus 140 q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~ 219 (443)
..+.+...+|..|...|+|++|...+.....- ++ .-...+......|...+++..|...+.++...-.. ++
T Consensus 61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~------~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~--~~ 131 (162)
T 3rkv_A 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKR------EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA--AA 131 (162)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG--GH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc------CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC--CH
Confidence 33456788999999999999999998875321 11 23567889999999999999999999998877443 44
Q ss_pred -HHHHHHHHHH
Q 013430 220 -VLNLQYKVCY 229 (443)
Q Consensus 220 -~lk~~y~~~~ 229 (443)
.++..+..+.
T Consensus 132 ~~~~~~l~~~~ 142 (162)
T 3rkv_A 132 SVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 5454444433
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=85.68 E-value=4.5 Score=31.89 Aligned_cols=68 Identities=12% Similarity=-0.031 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcc
Q 013430 141 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 215 (443)
Q Consensus 141 ~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~ 215 (443)
.......||.+|...|++++|.+.+...... ++. -.+.+......+...+++..|...+.++......
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3456788999999999999999999986432 111 1677888899999999999999999998776543
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=85.21 E-value=1.5 Score=45.05 Aligned_cols=94 Identities=15% Similarity=-0.058 Sum_probs=65.8
Q ss_pred HHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHH
Q 013430 146 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 225 (443)
Q Consensus 146 ~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y 225 (443)
..+|..+.+.|+|++|.+.+....... + .-.+.+......|...+++..|..+++++...-.. ++. .
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~----~ 76 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN------P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIK----G 76 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHH----H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC------C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHH----H
Confidence 345667778888888888887753221 1 12667788888888888888888888887665322 222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 226 KVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 226 ~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+...|.++...++|.+|-..|.++...
T Consensus 77 ~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 77 YYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334577788888888888888888764
No 162
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.91 E-value=2.9 Score=40.15 Aligned_cols=184 Identities=12% Similarity=0.084 Sum_probs=89.9
Q ss_pred HhhhcCCHHHHHHHHHHhhhhhcc---------ccH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 013430 192 LYLEDDDAVNAEAFINKASFLVSS---------SQQ----EVLNL--QYKVCYARILDLKRKFLEAALRYYDISQIQKRQ 256 (443)
Q Consensus 192 L~L~~~D~~~A~~~l~Ka~~~~~~---------~~d----~~lk~--~y~~~~ari~~~~r~f~eAa~~y~e~~~t~~~~ 256 (443)
.-...+|+..+...+.+++...-. .+. .++.+ ..++..|++....+|+.+=-+|+..+-..-..
T Consensus 13 ~~~~~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d- 91 (274)
T 4b4t_T 13 IAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFS- 91 (274)
T ss_dssp ------------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTT-
T ss_pred HHHhccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-
Confidence 344556777777777765432211 011 23333 46777888877777776655555444332100
Q ss_pred cCCCCCC-HHHHHHHHHHHHHHHHhcCCCCChHHHHHhhhcC-cccccccchH---HHHHHHHHHhcchhhHHHHHHHhh
Q 013430 257 IGDETID-EEALEQALSAAVTCTILAAAGPQRSRVLATLYKD-ERCSKLKIYP---ILQKVYLERILRKPEIDAFAEELK 331 (443)
Q Consensus 257 ~~~~~i~-~~~~~~~Lk~av~~~ILa~~~~~rs~ll~~l~kd-~~~~~l~~~~---~L~k~f~~~ii~~~el~~F~~~L~ 331 (443)
.....+ .+.+...+.+-+++.+..+...+-+..+..+-.. +.+.+-|..+ .|.+++++ +....|.+.++
T Consensus 92 -~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~e-----GnY~kff~l~~ 165 (274)
T 4b4t_T 92 -NNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLME-----GSYQKAWDLLQ 165 (274)
T ss_dssp -TSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHH-----TCSHHHHHHHH
T ss_pred -hhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHc-----CCHHHHHHHHh
Confidence 011122 2345667777788877766555655556655321 2222222222 33344433 66666665543
Q ss_pred HH------HHhhcCCchhHHHHHHHHHHHHHHhhcccccCHHHHHHHhCC-ChHHHHHHHHh
Q 013430 332 PH------QKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASR 386 (443)
Q Consensus 332 ~h------q~~l~~D~~~~L~~~viEhNL~~isk~Ys~Itl~~La~lLgL-s~eeaE~~ls~ 386 (443)
.. ...+ +..|..+++..-+..+.+.|.+|+++.++++|++ +.+++...+.+
T Consensus 166 ~~~~p~~~~~~f----~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~ 223 (274)
T 4b4t_T 166 SGSQNISEFDSF----TDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE 223 (274)
T ss_dssp TCTTCCHHHHHH----HHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHH
T ss_pred cCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 21 0111 3467788999999999999999999999999999 45665555543
No 163
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.80 E-value=36 Score=34.49 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013430 181 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 251 (443)
Q Consensus 181 ~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~ 251 (443)
++..+....+++|.+.||+..|-.++.....-.....+...++.|+..+.|++...+||..|-..+..+..
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57778888999999999999999999987655544456778999999999999999999999888777654
No 164
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=84.50 E-value=5.8 Score=32.21 Aligned_cols=74 Identities=12% Similarity=-0.014 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.+...+|.+|...|++++|...+.... +. ++ .-.+.|.....+|...+++..|...++++...-.. +++.+
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al-~~-----~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~--~~~a~ 118 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCI-RL-----DS-KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS--NEEAR 118 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHH-Hh-----hh-hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC--CHHHH
Confidence 446779999999999999999988753 21 11 22567899999999999999999999998776443 55544
Q ss_pred HHH
Q 013430 223 LQY 225 (443)
Q Consensus 223 ~~y 225 (443)
..+
T Consensus 119 ~~l 121 (126)
T 4gco_A 119 EGV 121 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 165
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=84.30 E-value=7 Score=30.32 Aligned_cols=65 Identities=15% Similarity=-0.058 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhc
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 214 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~ 214 (443)
.+...+|.+|...|++++|.+.+.....-. + .-.+.+.....++...+++..|..++.++.....
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLE------P-TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC------C-CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 456789999999999999999998864321 1 1356788889999999999999999999876543
No 166
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=84.27 E-value=5.6 Score=36.05 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh----cCCHHHHHHHHHHhhhhhccccH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVSSSQQ 218 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~l~Ka~~~~~~~~d 218 (443)
.....+|.+|...|++++|.+.+..... . + -.+.+.....+|.. .+|+.+|..++.++...- +
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~--~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~ 73 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD-L--K------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----Y 73 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-T--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-C--C------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----C
Confidence 3456788999999999999988887532 1 1 12467777888888 899999999998876552 2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 013430 219 EVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 251 (443)
Q Consensus 219 ~~lk~~y~~~~ari~~~----~r~f~eAa~~y~e~~~ 251 (443)
+. .+...|.++.. .+++.+|-..|..+..
T Consensus 74 ~~----a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 74 SN----GCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp HH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 22 12345777777 8889998888887775
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=84.07 E-value=8.1 Score=39.00 Aligned_cols=95 Identities=14% Similarity=0.019 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHH
Q 013430 141 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 220 (443)
Q Consensus 141 ~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~ 220 (443)
.+.+...+|..|...|+|++|...+.....- ++ .-...+....+.|+..+++..|...++++...-.. +..
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--~~~ 386 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGL------DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--NKA 386 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------C
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHH
Confidence 3567788999999999999999999886421 11 13567889999999999999999999998776432 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013430 221 LNLQYKVCYARILDLKRKFLEAALRYYD 248 (443)
Q Consensus 221 lk~~y~~~~ari~~~~r~f~eAa~~y~e 248 (443)
.+...+.++...+++.+|.+..+.
T Consensus 387 ----a~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 387 ----ARLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223356667777788777655443
No 168
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=84.07 E-value=5 Score=39.41 Aligned_cols=103 Identities=13% Similarity=0.019 Sum_probs=61.8
Q ss_pred HHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHhhhhhccccHHH----
Q 013430 146 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYL-EDDDAVNAEAFINKASFLVSSSQQEV---- 220 (443)
Q Consensus 146 ~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L-~~~D~~~A~~~l~Ka~~~~~~~~d~~---- 220 (443)
..+|.+|...|++++|.+.++... + ...++..+-.++.....++. ..+++..|..++.++........++.
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~ 413 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEF-S---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD 413 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-H---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred hhHHHHHHHhccHHHHHHHHHHHH-h---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 468999999999999999998753 1 22345556566666655543 67899999999988765433221110
Q ss_pred -HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 221 -LN-------------LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 221 -lk-------------~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
++ ...+...|.++...|+|.+|-.+|..+...
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 00 123455788999999999999999998875
No 169
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=84.03 E-value=8.8 Score=35.80 Aligned_cols=97 Identities=13% Similarity=-0.015 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....||.+|...|++++|...+..+.... +.. ....+.....+...++...|...+.++...-.. +++..
T Consensus 152 ~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------p~~-~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~--~~~~~ 222 (287)
T 3qou_A 152 EIGLLLAETLIALNRSEDAEAVLXTIPLQD------QDT-RYQGLVAQIELLXQAADTPEIQQLQQQVAENPE--DAALA 222 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------CSH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT--CHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCchhh------cch-HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc--cHHHH
Confidence 457789999999999999999999975321 111 122333333355667777787778777665433 44433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
. ..|..+...++|.+|...|.++...
T Consensus 223 ~----~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 223 T----QLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp H----HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3 3588899999999999999999985
No 170
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=83.71 E-value=10 Score=27.40 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhh
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 213 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~ 213 (443)
.....+|..+...|++++|.+.+.....-. + .-.+.+.....++...+++..|..++.++....
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD------P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC------C-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456789999999999999999998864321 1 124678888999999999999999999987664
No 171
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=83.57 E-value=4 Score=31.54 Aligned_cols=64 Identities=13% Similarity=-0.010 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 183 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 183 le~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+.+.....+|+..+++..|..++.++...-.. ++. .+...|.++...++|.+|...|..+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD--YVG----TYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 457888899999999999999999998776543 222 3455789999999999999999988874
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.57 E-value=10 Score=30.06 Aligned_cols=66 Identities=9% Similarity=-0.065 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhc
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 214 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~ 214 (443)
..+...+|..|...|++++|.+.+....... + .-.+.+.....+|...+++..|..++.++.....
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKD------G-GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------S-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------c-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4567889999999999999999998754221 1 1267788899999999999999999999877644
No 173
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=83.34 E-value=5.4 Score=30.09 Aligned_cols=65 Identities=11% Similarity=-0.014 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 182 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 182 Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+.+.+....+.++..+++..|...+.++...... ++. .+...|.++...++|.+|...|.++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~----~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHV----LYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHH----HHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 5678899999999999999999999998765432 322 3445688888999999999999998875
No 174
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=83.30 E-value=5.7 Score=42.48 Aligned_cols=93 Identities=12% Similarity=-0.051 Sum_probs=69.5
Q ss_pred HhccCHHHHHHHHhhhhhhc--cCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHH
Q 013430 153 ESEQQWSKAAQMLSGIDLDS--GMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYA 230 (443)
Q Consensus 153 e~~gd~~eAa~~L~~i~~Et--~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~a 230 (443)
...|++++|.+.+....-.. ..+.. +..-.+.++...+.++..+++..|...++++...-.. +++ .+...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~----a~~~lg 474 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--RWR----LVWYRA 474 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC--CHH----HHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc--hHH----HHHHHH
Confidence 67899999999998864000 00011 1223568899999999999999999999998776443 433 234578
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 013430 231 RILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 231 ri~~~~r~f~eAa~~y~e~~~t 252 (443)
.++...++|.+|...|..+...
T Consensus 475 ~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 475 VAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8899999999999999999985
No 175
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=83.26 E-value=1.9 Score=33.53 Aligned_cols=40 Identities=5% Similarity=0.006 Sum_probs=35.0
Q ss_pred HHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceE
Q 013430 355 LSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 394 (443)
Q Consensus 355 ~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ 394 (443)
+.+.+-...+++++||+.|++|+.-+...|..+...|.+.
T Consensus 8 l~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 8 RDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3334457899999999999999999999999999999874
No 176
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=82.74 E-value=21 Score=30.11 Aligned_cols=94 Identities=11% Similarity=-0.035 Sum_probs=62.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
...+|..+...|++++|...+...... + ..-.+.+....++++..|++..|...++++..... ++..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~------~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~--- 75 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE------L-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSY--- 75 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH------H-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH------C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHH---
Confidence 456889999999999999999885321 1 12357788899999999999999999998755433 2322
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 013430 225 YKVCYARILD-LKRKFLEAALRYYDISQI 252 (443)
Q Consensus 225 y~~~~ari~~-~~r~f~eAa~~y~e~~~t 252 (443)
....+.+.. ...+..+|-..|..+...
T Consensus 76 -~~~~~~~~~~~~~~~~~a~~~~~~al~~ 103 (176)
T 2r5s_A 76 -KSLIAKLELHQQAAESPELKRLEQELAA 103 (176)
T ss_dssp -HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhcccchHHHHHHHHHHh
Confidence 122232322 223333456666666653
No 177
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=82.72 E-value=4.7 Score=31.29 Aligned_cols=64 Identities=13% Similarity=0.255 Sum_probs=45.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEe---ccCCCEEEECC-cchHHHHHHHHHHHHHH
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI---DQVEAVIHFED-DTEELQQWDQQIVGLCQ 425 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akI---DQv~giV~F~~-~~~~l~~W~~~I~~l~~ 425 (443)
..+++.+||+.+|+|..-+-..+.+|...|-+...- |+....+...+ ..+.+..|-..+..+.+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~~~~~~~~~ 96 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKAVID 96 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999998776 43333344443 22334455555444433
No 178
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=82.21 E-value=11 Score=29.65 Aligned_cols=65 Identities=18% Similarity=-0.013 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhc
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 214 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~ 214 (443)
.+...+|.+|...|++++|...+.....- ++ .-.+.+.....+|...+++..|...+.++.....
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 44 VYYTNRALCYLKMQQPEQALADCRRALEL------DG-QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh------Cc-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 45678999999999999999999886422 11 1356788999999999999999999998766543
No 179
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=82.21 E-value=5.7 Score=32.94 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=32.8
Q ss_pred cCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEecc
Q 013430 364 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 399 (443)
Q Consensus 364 Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQ 399 (443)
+|..+||+.+|+|..-+-+.+.+|...|-+.-.-+.
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~ 78 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQN 78 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCc
Confidence 899999999999999999999999999999765443
No 180
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=82.12 E-value=6.5 Score=33.38 Aligned_cols=96 Identities=18% Similarity=0.081 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHhhhhhccccHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYL-EDDDAVNAEAFINKASFLVSSSQQEV 220 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L-~~~D~~~A~~~l~Ka~~~~~~~~d~~ 220 (443)
......||.+|...|++++|...+..+.... . +.. ++.....+.+ ...+...|...++++...... +++
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p-~~~----~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~--~~~ 109 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPLEY---Q-DNS----YKSLIAKLELHQQAAESPELKRLEQELAANPD--NFE 109 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---C-CHH----HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT--CHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---C-ChH----HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC--CHH
Confidence 3557789999999999999999998864321 1 111 1111122211 112223355556655443322 332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013430 221 LNLQYKVCYARILDLKRKFLEAALRYYDISQ 251 (443)
Q Consensus 221 lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~ 251 (443)
.. ...|.++...++|.+|-..|.++..
T Consensus 110 ~~----~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 110 LA----CELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp HH----HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HH----HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22 2346677777777777777776654
No 181
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=82.03 E-value=2.3 Score=32.75 Aligned_cols=38 Identities=8% Similarity=0.188 Sum_probs=35.0
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccC
Q 013430 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 400 (443)
Q Consensus 363 ~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv 400 (443)
.+|..+||+.||+|...+.+.|.+|..+|.|.+.-+.+
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 89999999999999999999999999999998875554
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=81.95 E-value=7.1 Score=38.46 Aligned_cols=96 Identities=9% Similarity=-0.029 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc
Q 013430 137 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 216 (443)
Q Consensus 137 fe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~ 216 (443)
.....+.+...+|..|...|+|++|.+.+.....- ++ ...+.+......|...+++..|...++++......
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~- 339 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI------DP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE- 339 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh------Cc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Confidence 34445577889999999999999999999886421 11 24667889999999999999999999998877543
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013430 217 QQEVLNLQYKVCYARILDLKRKFLEAALR 245 (443)
Q Consensus 217 ~d~~lk~~y~~~~ari~~~~r~f~eAa~~ 245 (443)
+++... ..+.++...+++.+|.+.
T Consensus 340 -~~~~~~----~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 340 -DKAIQA----ELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -CHHHHH----HHHHHHHHHHHHHHHHHC
T ss_pred -CHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 444332 345555666666666543
No 183
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=81.81 E-value=4.1 Score=31.08 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=52.5
Q ss_pred ChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 178 DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 178 ~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
++....+.+....+.+...+++..|...+.++...... ++. .+...|.++...++|.+|...|.++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAE----AWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34445778889999999999999999999998765332 222 3345688888899999999999888864
No 184
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=81.08 E-value=2.8 Score=32.77 Aligned_cols=45 Identities=9% Similarity=0.187 Sum_probs=36.8
Q ss_pred HHHHHHhhccc---ccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEE
Q 013430 352 HNLLSASKLYT---NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 396 (443)
Q Consensus 352 hNL~~isk~Ys---~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ak 396 (443)
..|+.+-+-.. .+|..+||+.||+|...+.+.|.+|-.+|.|.-.
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 33444444445 8999999999999999999999999999999644
No 185
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=80.73 E-value=7.8 Score=35.05 Aligned_cols=91 Identities=21% Similarity=0.177 Sum_probs=71.3
Q ss_pred HHHHHHHHHHh----ccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh----cCCHHHHHHHHHHhhhhhcc
Q 013430 144 IREKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVSS 215 (443)
Q Consensus 144 l~~~LA~iye~----~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~l~Ka~~~~~~ 215 (443)
....|+.+|.. .|++++|.+.+.... +. + -.+.+.....+|.. .+|+.+|..+++++...-
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~--~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-- 108 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DL--N------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-- 108 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-HC--C------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--
Confidence 35679999999 999999999998853 21 1 35677888899999 999999999999987652
Q ss_pred ccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 013430 216 SQQEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 251 (443)
Q Consensus 216 ~~d~~lk~~y~~~~ari~~~----~r~f~eAa~~y~e~~~ 251 (443)
++.. +...|.++.. .+++.+|..+|..+..
T Consensus 109 --~~~a----~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 109 --YAEG----CASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp --CHHH----HHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred --CccH----HHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 3322 2345777777 8999999999988886
No 186
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=80.53 E-value=7 Score=31.95 Aligned_cols=66 Identities=9% Similarity=-0.027 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 181 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 181 ~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.-.+.+......++..+++..|...+.++...-.. ++. ++...|.++...++|.+|...|..+...
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--DAR----YFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--cHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34677888999999999999999999998765432 332 3345788899999999999999999875
No 187
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=80.15 E-value=1.9 Score=34.27 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=36.2
Q ss_pred HHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEE
Q 013430 355 LSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 396 (443)
Q Consensus 355 ~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ak 396 (443)
+.+.+-...+++++||+.||+|+.-+...|..+...|.+.-.
T Consensus 8 l~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 8 RDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 334445789999999999999999999999999999988643
No 188
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=80.06 E-value=16 Score=27.16 Aligned_cols=61 Identities=8% Similarity=0.006 Sum_probs=48.7
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 187 VQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 187 L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+...+.++..+++..|...++++...... ++. ..+...|.++...++|.+|...|..+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV--GKD---EAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS--THH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56778899999999999999998766433 332 13455788899999999999999999875
No 189
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=79.79 E-value=7 Score=32.66 Aligned_cols=66 Identities=9% Similarity=-0.048 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 181 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 181 ~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.-.+.+......++..+++..|...++++...-.. ++.. +...|.++...++|.+|...|..+...
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~----~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DSRF----FLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cHHH----HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35778888999999999999999999998765433 3332 345688899999999999999999875
No 190
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.11 E-value=5.2 Score=35.67 Aligned_cols=69 Identities=14% Similarity=0.027 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 184 SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ---QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 184 e~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~---d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
=.++.+++..+..+-|..|+...+++.......+ .|..+.+...+.|..+-.+|+|..|...|..+...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999766654333 47788888889999999999999999999998764
No 191
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=78.81 E-value=13 Score=28.72 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=35.2
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEecc
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 399 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQ 399 (443)
...++..+||+.+|++..-+-..+.+|...|-+...-|.
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 356999999999999999999999999999999876654
No 192
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=78.75 E-value=13 Score=34.69 Aligned_cols=115 Identities=11% Similarity=0.017 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCH
Q 013430 120 KEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDA 199 (443)
Q Consensus 120 ~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~ 199 (443)
..+++..++.+.|... .+-..+|.+++..|++++|.+++..... . ++..--.+|...++++...+++
T Consensus 84 ~~~~~rAl~~~~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-----~p~~~~~~~~~~~~~~~~~~~~ 150 (308)
T 2ond_A 84 ANIYERAISTLLKKNM-------LLYFAYADYEESRMKYEKVHSIYNRLLA-I-----EDIDPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp HHHHHHHHTTTTTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHT-S-----SSSCTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhCcccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHh-c-----cccCccHHHHHHHHHHHHhcCH
Confidence 4444555544433322 3466789999999999999999988642 1 1111112788889999999999
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 013430 200 VNAEAFINKASFLVSSSQQEVLNLQYKVCYARILD-LKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 200 ~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~-~~r~f~eAa~~y~e~~~t~ 253 (443)
..|...+.++...... ++.+ +...+.+.. ..+++.+|...|..+....
T Consensus 151 ~~A~~~~~~a~~~~p~--~~~~----~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 151 KSGRMIFKKAREDART--RHHV----YVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp HHHHHHHHHHHTSTTC--CTHH----HHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC--CHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999998765432 2222 222233322 2588999999998888753
No 193
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=78.30 E-value=32 Score=32.98 Aligned_cols=99 Identities=10% Similarity=-0.022 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcC-ChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcccc-HHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVI-DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ-QEVL 221 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~-~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~-d~~l 221 (443)
....+|.++.+.|+|++|...+.... .. +.....++++..-+.+-..|++..|...+.++..-..... .++
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~------~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~d- 209 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAG------KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARA- 209 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGG------GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh------ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHH-
Confidence 45778889999999999999998532 12 2333566788889999999999999999999863221011 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.. .+.|..+...++..+|...|.++...
T Consensus 210 -a~--~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 210 -IA--WYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp -HH--HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HH--HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 22 34788899999999999999999985
No 194
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=77.73 E-value=6.3 Score=33.39 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=48.4
Q ss_pred HHHHHHhhHHHHhhcCCchhHHHHHHHHHHHHHHhh--cccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCC
Q 013430 324 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASK--LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVE 401 (443)
Q Consensus 324 ~~F~~~L~~hq~~l~~D~~~~L~~~viEhNL~~isk--~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~ 401 (443)
..|++.|++|... ..+..++.+.. .-..++..+||+.+|++..-+=..+.+|...|-+.-.-|..|
T Consensus 22 ~~~~~~l~~~gLt------------~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~D 89 (147)
T 4b8x_A 22 GEVDAVVKPYGLT------------FARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPND 89 (147)
T ss_dssp HHHHHHHGGGTCC------------HHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC--
T ss_pred HHHHHHHHHcCCC------------HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCc
Confidence 4566777766432 23444444332 234599999999999999999999999999999998888887
Q ss_pred C
Q 013430 402 A 402 (443)
Q Consensus 402 g 402 (443)
+
T Consensus 90 r 90 (147)
T 4b8x_A 90 G 90 (147)
T ss_dssp -
T ss_pred C
Confidence 7
No 195
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=77.49 E-value=6.9 Score=39.92 Aligned_cols=95 Identities=9% Similarity=-0.115 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHH
Q 013430 142 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 221 (443)
Q Consensus 142 a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~l 221 (443)
+.....+|..|.+.|++++|.+.+.....- ++ .-.+.+.....+|...+++..|...++++...... +++.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~ 110 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIEL------DK-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DKDA 110 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CTTH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Confidence 355678999999999999999999885421 11 22567888899999999999999999998776433 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013430 222 NLQYKVCYARILDLKRKFLEAALRYY 247 (443)
Q Consensus 222 k~~y~~~~ari~~~~r~f~eAa~~y~ 247 (443)
.. ....+..+...++|.+|...|.
T Consensus 111 ~~--~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 111 KM--KYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HH--HHHHHHHHHHHHHHCCC-----
T ss_pred HH--HHHHHHHHHHHHHHHHHhcccc
Confidence 21 1122333677899999999887
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=77.01 E-value=8.6 Score=29.86 Aligned_cols=64 Identities=11% Similarity=-0.021 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 183 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 183 le~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
...+.....+|...+++..|..++.++...... ++. .+...|.++...++|.+|...|..+...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--YSV----AWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--cHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888999999999999999999998766432 222 2345788999999999999999988874
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=76.80 E-value=9.6 Score=28.73 Aligned_cols=64 Identities=9% Similarity=-0.118 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 183 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 183 le~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+.+......+...+++..|...+.++...... ++. .+...|..+...++|.+|-..|..+...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--NPV----GYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 567888899999999999999999998776433 332 2345788899999999999999999874
No 198
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=76.50 E-value=15 Score=28.52 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=44.7
Q ss_pred ccccCHHHH----HHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECC-cchHHHHHHHHH
Q 013430 361 YTNISFEEL----GTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED-DTEELQQWDQQI 420 (443)
Q Consensus 361 Ys~Itl~~L----a~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~-~~~~l~~W~~~I 420 (443)
...++..+| |+.+|++..-+-..+.+|...|-+.-.-|.....+...+ +.+.+..|...+
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~~~~ 84 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLKTAI 84 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHHHHH
Confidence 467899999 899999999999999999999999888887444555553 223344444333
No 199
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=76.38 E-value=17 Score=35.99 Aligned_cols=93 Identities=6% Similarity=-0.098 Sum_probs=40.3
Q ss_pred HHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHhhhhhccccHHHHHHH
Q 013430 146 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDD-AVNAEAFINKASFLVSSSQQEVLNLQ 224 (443)
Q Consensus 146 ~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D-~~~A~~~l~Ka~~~~~~~~d~~lk~~ 224 (443)
..++.++...|++++|.+.+.....- ++ .-.+.|.....++...++ +..|...++++...-.+ +..
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l------~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--~~~---- 167 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIEL------NA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQ---- 167 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHH----
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHh------Cc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--CHH----
Confidence 34445555555555555555443211 00 112344444444455553 55555555554443222 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDISQ 251 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~~ 251 (443)
.+...|.++...++|.+|-..|..+..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ 194 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILN 194 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 112234444444555555555555544
No 200
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=74.81 E-value=18 Score=29.37 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=38.2
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-..|..++
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 87 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDK 87 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCS
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccC
Confidence 457899999999999999999999999999999988877666
No 201
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=72.64 E-value=22 Score=29.10 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=38.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~ 86 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADR 86 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCC
Confidence 457999999999999999999999999999999988776666
No 202
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=72.09 E-value=23 Score=28.73 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=38.9
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCE
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 403 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~gi 403 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++-
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R 83 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRR 83 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCce
Confidence 4779999999999999999999999999999999887776663
No 203
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=71.98 E-value=27 Score=28.28 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=37.8
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 50 ~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 91 (140)
T 2nnn_A 50 TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDG 91 (140)
T ss_dssp HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCC
Confidence 347999999999999999999999999999999888776665
No 204
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=71.96 E-value=21 Score=29.09 Aligned_cols=43 Identities=9% Similarity=0.005 Sum_probs=38.2
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCE
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 403 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~gi 403 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++-
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 4569999999999999999999999999999998887766653
No 205
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=70.93 E-value=5.9 Score=30.57 Aligned_cols=33 Identities=3% Similarity=0.047 Sum_probs=30.8
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHhhhhcCceEE
Q 013430 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 395 (443)
Q Consensus 363 ~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~a 395 (443)
.+|+.+||+.||+|+.-|...|..+-..|.|.-
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 499999999999999999999999999999853
No 206
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.61 E-value=32 Score=28.03 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=41.9
Q ss_pred hcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 359 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 359 k~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
.....++..+||+.+|++..-+-..+.+|...|-+.-.-|..++ .+...+
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~ 100 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTP 100 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECT
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECH
Confidence 45678999999999999999999999999999999887765554 455554
No 207
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=70.39 E-value=10 Score=33.49 Aligned_cols=91 Identities=19% Similarity=0.119 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcC----CHHHHHHHHHHhhhhhccccH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDD----DAVNAEAFINKASFLVSSSQQ 218 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~----D~~~A~~~l~Ka~~~~~~~~d 218 (443)
.....|+.+|...+|+++|.+.+...- +. + -.+.+.....+|.. + |+.+|..++.++... ++
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~--g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~ 84 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAA-AQ--G------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GS 84 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH-HT--T------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH-Hc--C------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CC
Confidence 345789999999999999999998852 21 1 13556677788887 7 999999999998543 23
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 013430 219 EVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 251 (443)
Q Consensus 219 ~~lk~~y~~~~ari~~~----~r~f~eAa~~y~e~~~ 251 (443)
+.-.. ..|.++.. .+|+.+|...|..+..
T Consensus 85 ~~a~~----~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 85 KSGEI----VLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp HHHHH----HHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred HHHHH----HHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 33222 24666655 7899999999888876
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=70.07 E-value=8.4 Score=30.29 Aligned_cols=69 Identities=9% Similarity=0.148 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 184 SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ-EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 184 e~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d-~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+-|+.+.+.++..+||.+|...+.+|.......+. ..-+...+...|..+...+++.+|-..|.++...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45789999999999999999999998776533210 0112233456788889999999999999999874
No 209
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=69.76 E-value=29 Score=29.27 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=44.9
Q ss_pred HHHHHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEEC
Q 013430 351 EHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFE 407 (443)
Q Consensus 351 EhNL~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~ 407 (443)
+..++.+..-...++..+||+.+|++..-+=..+.+|...|-|.-.-|..++ .|...
T Consensus 48 q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT 107 (162)
T 3k0l_A 48 QFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVT 107 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEEC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEEC
Confidence 3333333334568999999999999999999999999999999988877766 34444
No 210
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=69.68 E-value=31 Score=28.14 Aligned_cols=54 Identities=9% Similarity=0.050 Sum_probs=43.1
Q ss_pred HHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 354 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 354 L~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
++.+.. ...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++ .+...+
T Consensus 42 iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~ 98 (146)
T 2gxg_A 42 VLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITE 98 (146)
T ss_dssp HHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECH
T ss_pred HHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECH
Confidence 333334 788999999999999999999999999999999887776554 344443
No 211
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=69.66 E-value=23 Score=29.57 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=41.3
Q ss_pred HHHHHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 351 EHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 351 EhNL~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
+..++.+..-...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++ .+...+
T Consensus 45 ~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 105 (155)
T 3cdh_A 45 EWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTD 105 (155)
T ss_dssp HHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECH
Confidence 3334444444567999999999999999999999999999999876655444 455543
No 212
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=69.30 E-value=7.9 Score=37.31 Aligned_cols=96 Identities=9% Similarity=0.008 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 223 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~ 223 (443)
+...+|..|...|+|++|...+.....- ++ .-...+....+.|...+++..|...++++...-.. ++....
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~------~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--~~~a~~ 302 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE------EE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD--DKAIRR 302 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHH
Confidence 6778999999999999999999886421 11 22567889999999999999999999998765432 333322
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 013430 224 QYKVCYARI-LDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 224 ~y~~~~ari-~~~~r~f~eAa~~y~e~~~t 252 (443)
. .+.+ ....+.+..+...|..++..
T Consensus 303 ~----L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 303 E----LRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ------------------------------
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 2 2333 23345555555666666653
No 213
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=68.94 E-value=24 Score=28.96 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=38.4
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
...++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++ .|...+
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 99 (143)
T 3oop_A 49 NEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTD 99 (143)
T ss_dssp HSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECH
T ss_pred cCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECH
Confidence 378999999999999999999999999999999887765554 455553
No 214
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=67.88 E-value=11 Score=31.01 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=36.8
Q ss_pred HHHHHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 351 EHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 351 EhNL~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
+..++....... ++..+||+.+|++..-+=..+.+|...|-+.-.-|..++
T Consensus 40 ~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~ 90 (146)
T 3tgn_A 40 QEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDA 90 (146)
T ss_dssp HHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCC
Confidence 333444444455 999999999999999999999999999999888765555
No 215
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=67.84 E-value=20 Score=31.54 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcc----CHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh----cCCHHHHHHHHHHhhhhhcc
Q 013430 144 IREKLADLYESEQ----QWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVSS 215 (443)
Q Consensus 144 l~~~LA~iye~~g----d~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~l~Ka~~~~~~ 215 (443)
....|+.+|.. + |+++|.+.+... .+. + -.+.+.....+|.. .+|+.+|..++.++...-..
T Consensus 52 a~~~lg~~y~~-~g~~~~~~~A~~~~~~A-~~~--g------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 121 (212)
T 3rjv_A 52 ALALLAQLKIR-NPQQADYPQARQLAEKA-VEA--G------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES 121 (212)
T ss_dssp HHHHHHHHTTS-STTSCCHHHHHHHHHHH-HHT--T------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred HHHHHHHHHHc-CCCCCCHHHHHHHHHHH-HHC--C------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence 45679999998 7 999999999885 221 1 23456677788887 89999999999998765332
Q ss_pred ccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Q 013430 216 SQQEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQI 252 (443)
Q Consensus 216 ~~d~~lk~~y~~~~ari~~~----~r~f~eAa~~y~e~~~t 252 (443)
.++++-. ...|.++.. .+|+.+|...|..+...
T Consensus 122 ~~~~~a~----~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 122 DAAVDAQ----MLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHH----HHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred cchHHHH----HHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 1112222 234677776 78899999999888763
No 216
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=67.13 E-value=38 Score=27.15 Aligned_cols=41 Identities=15% Similarity=-0.023 Sum_probs=37.9
Q ss_pred cccCHHHHHHHh-CCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 362 TNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 362 s~Itl~~La~lL-gLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
..+++.+||+.+ |++..-+-..+.+|...|-|....|..++
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~ 75 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELP 75 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSS
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 568999999999 99999999999999999999988887665
No 217
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=66.82 E-value=14 Score=31.31 Aligned_cols=66 Identities=18% Similarity=0.116 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 181 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 181 ~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.-.+.+......+...|++..|..+++++...-.. ++. ++...|.++...++|.+|-.+|..+...
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~~~----~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--NVD----YIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----HHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 34778889999999999999999999998776443 333 3455788999999999999999999985
No 218
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=66.68 E-value=29 Score=28.22 Aligned_cols=41 Identities=5% Similarity=0.114 Sum_probs=36.1
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
..++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCC
Confidence 38999999999999999999999999999999888776665
No 219
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=66.59 E-value=42 Score=26.42 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=33.7
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEec
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 398 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akID 398 (443)
..++..+||+.+|+|..-+-..+..|...|-+...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 3489999999999999999999999999999987655
No 220
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=66.35 E-value=16 Score=36.19 Aligned_cols=96 Identities=8% Similarity=-0.106 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhccC-HHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 144 IREKLADLYESEQQ-WSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 144 l~~~LA~iye~~gd-~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.-..++.++...|+ +++|...+.....- ++ .-.+.|.....++...+++..|...++|+...-.. +..
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l------~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~--~~~-- 201 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEE------QP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK--NYH-- 201 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--CHH--
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHH------CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--CHH--
Confidence 45678999999996 99999999886432 11 13567888888999999999999999998776443 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+...|.++...++|.+|-.+|..+...
T Consensus 202 --a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 202 --AWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp --HHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 2244677888889999999999999985
No 221
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=66.11 E-value=33 Score=27.96 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=37.6
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~ 82 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK 82 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCC
Confidence 357899999999999999999999999999999888766555
No 222
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=65.90 E-value=30 Score=26.64 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=34.8
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVE 401 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~ 401 (443)
-..++..+||+.+|+|..-+-+.+..|...|-+...-+..+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 45799999999999999999999999999999987666444
No 223
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=65.85 E-value=21 Score=29.40 Aligned_cols=42 Identities=7% Similarity=0.110 Sum_probs=30.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|+++.-+=..+.+|...|-+.-.-|..++
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~Dr 90 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQ 90 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-------
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 457999999999999999999999999999999887777666
No 224
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=65.81 E-value=15 Score=30.06 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=39.5
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
..++..+||+.+|++..-+=..+.+|...|-+.-.-|..|+ .|...+
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~ 101 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNA 101 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECH
Confidence 56999999999999999999999999999999776666555 455554
No 225
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=65.40 E-value=23 Score=29.17 Aligned_cols=48 Identities=4% Similarity=0.102 Sum_probs=40.3
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++ .|...+
T Consensus 43 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~ 93 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTE 93 (145)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeECh
Confidence 446999999999999999999999999999999877766555 455554
No 226
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=64.91 E-value=27 Score=29.77 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=38.0
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|++..-+=..+.+|...|-+.-.-|..++
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 457999999999999999999999999999999888876665
No 227
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=64.90 E-value=43 Score=27.48 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=36.4
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~ 95 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDR 95 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCc
Confidence 457999999999999999999999999999999887766555
No 228
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=64.84 E-value=12 Score=29.97 Aligned_cols=65 Identities=8% Similarity=-0.134 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 182 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 182 Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
..+.++.....++..+++..|...+.++...-.. +++ .+...|.++...++|.+|-..|..+...
T Consensus 16 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPE--REE----AWRSLGLTQAENEKDGLAIIALNHARML 80 (121)
T ss_dssp GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445788899999999999999999998776443 332 2345788899999999999999998875
No 229
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=64.30 E-value=23 Score=35.80 Aligned_cols=99 Identities=12% Similarity=0.000 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.+...+|.+++..|++++|.+++..... . ++..-..+|+.-++++...+++..|..++.++...... ++..
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~-~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~~- 392 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLA-I-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHV- 392 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-S-----SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTHH-
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhC-c-----cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--chHH-
Confidence 4567889999999999999999998642 2 11111248888889888899999999999998765322 1111
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 013430 223 LQYKVCYARI-LDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 223 ~~y~~~~ari-~~~~r~f~eAa~~y~e~~~t~ 253 (443)
+...+.+ +...+++.+|...|-.+....
T Consensus 393 ---~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 393 ---YVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp ---HHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 1122333 234688999999988888753
No 230
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=64.12 E-value=26 Score=29.06 Aligned_cols=42 Identities=10% Similarity=0.216 Sum_probs=37.6
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 49 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 467999999999999999999999999999999887766555
No 231
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=63.85 E-value=23 Score=28.62 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=37.6
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 557999999999999999999999999999999877766555
No 232
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=63.55 E-value=14 Score=31.11 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=36.3
Q ss_pred hcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceE---EEeccC
Q 013430 359 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR---GSIDQV 400 (443)
Q Consensus 359 k~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~---akIDQv 400 (443)
+-..+++..+||+.+|+|+.-+-+.+.+|...|.|. +.+|+.
T Consensus 15 ~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 15 KKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 335789999999999999999999999999999886 456754
No 233
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=63.50 E-value=26 Score=28.98 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=43.6
Q ss_pred HHHHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 352 HNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 352 hNL~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
..++.+......++..+||+.+|++..-+-..+.+|...|-+.-.-|..++ .+...+
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 102 (152)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTP 102 (152)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEECh
Confidence 333333333567999999999999999999999999999999887765544 455543
No 234
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=63.39 E-value=14 Score=27.16 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=31.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEE
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 395 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~a 395 (443)
..++..+||+.+|+|...+.+.+..|..+|.|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4599999999999999999999999999999754
No 235
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=63.32 E-value=13 Score=28.17 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=32.2
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEE
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 396 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ak 396 (443)
..++..+||+.+|+|..-+-+.+..|...|.+...
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 46999999999999999999999999999999743
No 236
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=63.32 E-value=13 Score=39.61 Aligned_cols=96 Identities=14% Similarity=-0.026 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHH
Q 013430 143 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 222 (443)
Q Consensus 143 ~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk 222 (443)
.....+|..|.+.|++++|.+.+....... ..-.+.+.....+|+..+++..|...++++...-.. +++.
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~- 503 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG--ELAP- 503 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CSHH-
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHH-
Confidence 346778999999999999999998864321 112567888899999999999999999998776543 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 223 LQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 223 ~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
+...|.++...++|.+ ...|..+...
T Consensus 504 ---~~~lg~~~~~~g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 504 ---KLALAATAELAGNTDE-HKFYQTVWST 529 (681)
T ss_dssp ---HHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred ---HHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence 2345777888888888 8888887764
No 237
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=63.22 E-value=43 Score=27.39 Aligned_cols=48 Identities=6% Similarity=0.055 Sum_probs=37.7
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++ .+...+
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 98 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSS 98 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECH
Confidence 568999999999999999999999999999999877665544 355553
No 238
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=62.72 E-value=54 Score=25.78 Aligned_cols=45 Identities=4% Similarity=-0.066 Sum_probs=36.6
Q ss_pred cCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCcch
Q 013430 364 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTE 411 (443)
Q Consensus 364 Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~~~ 411 (443)
++..+||..+|+++.-+.+++..+...|-+.-. .+|+...+.+.+
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~---~~~~~LT~kG~~ 65 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE---GKQYMLTKKGEE 65 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE---CCeeEEChhHHH
Confidence 999999999999999999999999999998765 334444444443
No 239
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=62.62 E-value=27 Score=28.75 Aligned_cols=55 Identities=9% Similarity=0.203 Sum_probs=38.5
Q ss_pred HHHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEEC
Q 013430 353 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFE 407 (443)
Q Consensus 353 NL~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~ 407 (443)
.++.+......++..+||+.+|+++.-+=..+.+|...|-+.-.-|..++ .|...
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT 101 (148)
T 3nrv_A 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLT 101 (148)
T ss_dssp HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEEC
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEEC
Confidence 33333334568999999999999999999999999999999877665544 34444
No 240
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=62.20 E-value=25 Score=28.93 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=42.0
Q ss_pred HHHHHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 351 EHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 351 EhNL~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
+..++.+..-...++..+||+.+|+++.-+=..+.+|...|-+.-.-|..++ .|...+
T Consensus 38 q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 98 (140)
T 3hsr_A 38 GYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTE 98 (140)
T ss_dssp HHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeECh
Confidence 3344444334578999999999999999999999999999999888776665 455543
No 241
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=61.90 E-value=15 Score=31.61 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=35.8
Q ss_pred hcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceE---EEeccC
Q 013430 359 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR---GSIDQV 400 (443)
Q Consensus 359 k~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~---akIDQv 400 (443)
+-..+++..+||+.+|+|+.-+-+.+.+|...|.|. +.+|..
T Consensus 20 ~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 20 QENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 335679999999999999999999999999999885 456643
No 242
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=61.86 E-value=34 Score=28.62 Aligned_cols=47 Identities=9% Similarity=0.176 Sum_probs=38.2
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEEC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFE 407 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~ 407 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++ .+...
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT 113 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLT 113 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEEC
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC
Confidence 457999999999999999999999999999999877655444 34444
No 243
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=61.69 E-value=34 Score=28.67 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=39.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
...++..+||+.+|+++.-+=..+.+|...|-+.-.-|..++ .|...+
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~ 112 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTE 112 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECH
Confidence 467999999999999999999999999999999888876665 455543
No 244
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=60.84 E-value=35 Score=28.49 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=33.2
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|++..-+-..+.+|+..|-+.-.-|..++
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 568999999999999999999999999999999876655444
No 245
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=60.80 E-value=15 Score=31.13 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=36.2
Q ss_pred cccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEE---EeccC
Q 013430 360 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG---SIDQV 400 (443)
Q Consensus 360 ~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~a---kIDQv 400 (443)
--.++++.+||+.+|+|+.-+-+.+.+|...|.+.+ .+|..
T Consensus 19 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 19 GNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 347899999999999999999999999999998854 67765
No 246
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=60.80 E-value=26 Score=28.72 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=65.6
Q ss_pred HHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh----cCCHHHHHHHHHHhhhhhccccHHHHHH
Q 013430 148 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVSSSQQEVLNL 223 (443)
Q Consensus 148 LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~l~Ka~~~~~~~~d~~lk~ 223 (443)
|+.+|...+.+++|.+.+..-- + .+ -.+-+.....+|.. .+|+.+|..+++|+... ++++-.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa-~--~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~a~- 96 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKAC-E--LN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----NDQDGC- 96 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHH-H--TT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHH-
T ss_pred HHHHHHcCCCHHHHHHHHHHHH-c--CC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CCHHHH-
Confidence 9999999999999888887642 2 11 13556777888888 89999999999998765 233322
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Q 013430 224 QYKVCYARILDL----KRKFLEAALRYYDISQI 252 (443)
Q Consensus 224 ~y~~~~ari~~~----~r~f~eAa~~y~e~~~t 252 (443)
...|.++.. .+|+.+|...|..+...
T Consensus 97 ---~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 97 ---LILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp ---HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 224677777 89999999999888763
No 247
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=60.78 E-value=52 Score=24.95 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=37.1
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEEC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE 407 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~ 407 (443)
..++..+||+.+|+|..-+-..+..|...|-+...-|.....+...
T Consensus 37 ~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~ 82 (99)
T 3cuo_A 37 PGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIK 82 (99)
T ss_dssp CSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEC
Confidence 4689999999999999999999999999999977655433333333
No 248
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=59.58 E-value=36 Score=33.90 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=11.3
Q ss_pred HHHHHHHHh----ccCHHHHHHHHhh
Q 013430 146 EKLADLYES----EQQWSKAAQMLSG 167 (443)
Q Consensus 146 ~~LA~iye~----~gd~~eAa~~L~~ 167 (443)
..|+.+|.. .+|+++|...+..
T Consensus 43 ~~lg~~y~~g~~~~~~~~~A~~~~~~ 68 (490)
T 2xm6_A 43 LELGYRYFQGNETTKDLTQAMDWFRR 68 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 445555554 5555555555544
No 249
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=59.50 E-value=49 Score=27.01 Aligned_cols=41 Identities=10% Similarity=0.021 Sum_probs=37.2
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
... +..+||+.+|+++.-+=..+.+|...|-+.-.-|..++
T Consensus 49 ~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 89 (144)
T 3f3x_A 49 EPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDR 89 (144)
T ss_dssp SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 344 99999999999999999999999999999988887776
No 250
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=59.35 E-value=58 Score=26.97 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=36.8
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
..++..+||+.+|++..-+-..+.+|+..|-+.-.-|..++
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 47999999999999999999999999999999887765555
No 251
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=59.11 E-value=71 Score=29.45 Aligned_cols=84 Identities=7% Similarity=-0.014 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHH
Q 013430 158 WSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKR 237 (443)
Q Consensus 158 ~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r 237 (443)
+++|..++.... + .+++ .-..+|+.-+.++...+++..|...++|+...... +++. .+...|.++...+
T Consensus 80 ~~~A~~~~~rAl-~----~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~---~~~~~~~~~~~~~ 148 (308)
T 2ond_A 80 SDEAANIYERAI-S----TLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DPTL---VYIQYMKFARRAE 148 (308)
T ss_dssp HHHHHHHHHHHH-T----TTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CTHH---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-H----HhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--CccH---HHHHHHHHHHHhc
Confidence 388988887743 1 1112 23468888999999999999999999998775432 2321 3344577778889
Q ss_pred HHHHHHHHHHHHHhh
Q 013430 238 KFLEAALRYYDISQI 252 (443)
Q Consensus 238 ~f~eAa~~y~e~~~t 252 (443)
++.+|-..|..+...
T Consensus 149 ~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 149 GIKSGRMIFKKARED 163 (308)
T ss_dssp CHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999888864
No 252
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=58.64 E-value=17 Score=30.70 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=35.5
Q ss_pred cccccCHHHHHHHhCCChHHHHHHHHhhhhcCceE---EEeccC
Q 013430 360 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR---GSIDQV 400 (443)
Q Consensus 360 ~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~---akIDQv 400 (443)
--.+++..+||+.+|+|+.-+-+.+.+|...|.+. +.+|..
T Consensus 20 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 20 ENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 34789999999999999999999999999999885 446643
No 253
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=58.47 E-value=27 Score=28.94 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=39.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEE--EeccCCC---EEEECC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG--SIDQVEA---VIHFED 408 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~a--kIDQv~g---iV~F~~ 408 (443)
...++..+||+.+|++..-+-..+.+|+..|-+.- .-|..++ .+...+
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~ 105 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSK 105 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECH
Confidence 45699999999999999999999999999999988 6665555 455553
No 254
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=58.36 E-value=43 Score=27.07 Aligned_cols=45 Identities=11% Similarity=0.226 Sum_probs=38.8
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEEC
Q 013430 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFE 407 (443)
Q Consensus 363 ~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~ 407 (443)
.++..+||+.+|++..-+-..+.+|...|-+.-.-|..++ .+...
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT 97 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLT 97 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEEC
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEEC
Confidence 6999999999999999999999999999999877776555 44444
No 255
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=58.25 E-value=39 Score=33.63 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=57.2
Q ss_pred HHHHHHHHHh----ccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh----cCCHHHHHHHHHHhhhhhccc
Q 013430 145 REKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVSSS 216 (443)
Q Consensus 145 ~~~LA~iye~----~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~l~Ka~~~~~~~ 216 (443)
...|+.+|.. .+|+++|.+.+.... +. + -.+.+.....+|.. .+|+.+|..++.++...
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~--~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~---- 180 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQ--G------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ---- 180 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HC--C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----
Confidence 4568888888 788888888887742 21 1 13456666677776 77888888888877554
Q ss_pred cHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 013430 217 QQEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 251 (443)
Q Consensus 217 ~d~~lk~~y~~~~ari~~~----~r~f~eAa~~y~e~~~ 251 (443)
+++.- ....|.++.. .+++.+|...|..+..
T Consensus 181 ~~~~a----~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 181 GNVWS----CNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp TCHHH----HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCHHH----HHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 12221 1223555555 6677777777766554
No 256
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=57.76 E-value=23 Score=28.84 Aligned_cols=42 Identities=7% Similarity=-0.088 Sum_probs=37.5
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 457999999999999999999999999999999888775554
No 257
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=57.34 E-value=21 Score=30.13 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=35.2
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceE---EEeccC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR---GSIDQV 400 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~---akIDQv 400 (443)
-.++++.+||+.+|+|+.-+-+.+.+|...|.+. +.+|+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 4689999999999999999999999999999884 556654
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=57.23 E-value=34 Score=33.93 Aligned_cols=90 Identities=11% Similarity=0.079 Sum_probs=66.0
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 013430 129 QIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINK 208 (443)
Q Consensus 129 ~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~K 208 (443)
|+......+++++..+...+++.+.+.|++.+|...+..+... . +-.+ +.+-..|+.+...|+...|...+.+
T Consensus 158 w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~---~--P~~E--~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 158 FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE---H--PYRE--PLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---S--TTCH--HHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---C--CCCH--HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444445567777777888999999999999999988886432 1 1223 3788889999999999999999998
Q ss_pred hhhhhcc----ccHHHHHHHH
Q 013430 209 ASFLVSS----SQQEVLNLQY 225 (443)
Q Consensus 209 a~~~~~~----~~d~~lk~~y 225 (443)
......+ .+.++++-.|
T Consensus 231 ~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 231 VKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHH
Confidence 7766543 2556665544
No 259
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=57.11 E-value=26 Score=28.61 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=37.4
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 456999999999999999999999999999999887775555
No 260
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=56.13 E-value=25 Score=28.91 Aligned_cols=43 Identities=7% Similarity=0.074 Sum_probs=34.1
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEE
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVI 404 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV 404 (443)
..++.++||+.+|+|+..+.+.+..+...|-+...=....|+.
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~ 67 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYV 67 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEE
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceE
Confidence 5689999999999999999999999999999875433234444
No 261
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=55.89 E-value=21 Score=31.24 Aligned_cols=41 Identities=7% Similarity=0.001 Sum_probs=35.9
Q ss_pred cccccCHHHHHHHhCCChHHHHHHHHhhhhcCceE---EEeccC
Q 013430 360 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR---GSIDQV 400 (443)
Q Consensus 360 ~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~---akIDQv 400 (443)
--.+++..+||+.+|+|+.-+-+.+.+|...|.|. +.+|+.
T Consensus 28 ~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 28 KDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 34689999999999999999999999999999885 466754
No 262
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=55.89 E-value=83 Score=25.83 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=37.2
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEEC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFE 407 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~ 407 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++ .+...
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 108 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALT 108 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEEC
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeEC
Confidence 567999999999999999999999999999999877765554 45554
No 263
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=55.72 E-value=1e+02 Score=26.68 Aligned_cols=67 Identities=7% Similarity=-0.085 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcc---CHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcc
Q 013430 144 IREKLADLYESEQ---QWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 215 (443)
Q Consensus 144 l~~~LA~iye~~g---d~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~ 215 (443)
.+..+|-.+...+ ++.++..+|.++-... ++..+-|.+...+--|...+||.+|..+++++...-..
T Consensus 34 ~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3577777777776 8889999999975431 24467788888888899999999999999998777543
No 264
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=55.71 E-value=52 Score=28.00 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=36.9
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
-..++..+||+.+|++..-+=..+.+|...|-|.-.-|..++ .|...+
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 116 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTE 116 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECG
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECH
Confidence 456999999999999999999999999999999877755554 455554
No 265
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=55.51 E-value=61 Score=26.25 Aligned_cols=41 Identities=10% Similarity=0.001 Sum_probs=37.8
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
..+|..+||+.+|+|..-+=..+.+|...|-+.-.-|..++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 67999999999999999999999999999999988777665
No 266
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=54.72 E-value=1.2e+02 Score=30.93 Aligned_cols=96 Identities=11% Similarity=-0.049 Sum_probs=70.8
Q ss_pred HHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHH
Q 013430 146 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 225 (443)
Q Consensus 146 ~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y 225 (443)
..|...|.+.|++++|.+++.++... + +.+ -+..|-..+.-|...++...|..++......-.. +|.. -
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~---g-~~P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~-Pd~~----t 177 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAF---G-IQP--RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV-PEEP----E 177 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHT---T-CCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-CCHH----H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc---C-CCC--ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCHH----H
Confidence 45788899999999999999998643 2 111 2456888899999999999999999875443222 2322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 226 KVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 226 ~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
|......+...+++.+|...|.+.-..
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 355667788899999999998887653
No 267
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=54.06 E-value=56 Score=26.94 Aligned_cols=54 Identities=6% Similarity=0.187 Sum_probs=38.4
Q ss_pred HHHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEE--EeccCCC---EEEEC
Q 013430 353 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG--SIDQVEA---VIHFE 407 (443)
Q Consensus 353 NL~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~a--kIDQv~g---iV~F~ 407 (443)
.++.+. ....++..+||+.+|++..-+=..+.+|...|-+.- ..|..++ .|...
T Consensus 42 ~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT 100 (151)
T 3kp7_A 42 HVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLS 100 (151)
T ss_dssp HHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEEC
T ss_pred HHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEEC
Confidence 333334 567899999999999999999999999999999986 3355555 34444
No 268
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=53.61 E-value=39 Score=28.39 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=38.7
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
...++..+||+.+|++..-+=..+.+|...|-|.-.-|..++ .|...+
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~ 115 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTR 115 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECH
Confidence 458999999999999999999999999999999877765555 455553
No 269
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=53.48 E-value=92 Score=25.53 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=51.9
Q ss_pred HHHHHHHHH-HHhccCH--HHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhcc
Q 013430 143 IIREKLADL-YESEQQW--SKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 215 (443)
Q Consensus 143 ~l~~~LA~i-ye~~gd~--~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~ 215 (443)
.+...+|.+ |...|++ ++|.+.+....... + .-.+.+....++|...+++..|..++.++......
T Consensus 79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~------p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALD------S-NEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC------C-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 345678888 8899999 99999998864321 1 12467888899999999999999999998776544
No 270
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=53.02 E-value=79 Score=27.50 Aligned_cols=42 Identities=5% Similarity=0.113 Sum_probs=39.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...++..+||+.+|++..-+=..+.+|+..|-|.-.-|..++
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 568999999999999999999999999999999988887776
No 271
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=51.93 E-value=20 Score=27.78 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=35.6
Q ss_pred ccCHHHHHHHhCCChHH-HHHHHHhhhhcCceE-EEeccCCCEEEEC
Q 013430 363 NISFEELGTLLGIAPQK-AEKIASRMIFEDRMR-GSIDQVEAVIHFE 407 (443)
Q Consensus 363 ~Itl~~La~lLgLs~ee-aE~~ls~MI~~grL~-akIDQv~giV~F~ 407 (443)
.++..+||+.+|++..- +=..+.+|...|-+. ..-|+....+...
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT 76 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLT 76 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEEC
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEEC
Confidence 69999999999999999 999999999999997 1223333345544
No 272
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=51.68 E-value=78 Score=24.23 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=34.0
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEec
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 398 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akID 398 (443)
..++..+||+.+|+|..-+-+.+..|...|-+..+-+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5789999999999999999999999999999987644
No 273
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=51.49 E-value=47 Score=25.62 Aligned_cols=46 Identities=7% Similarity=0.102 Sum_probs=37.8
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECC
Q 013430 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 408 (443)
Q Consensus 363 ~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~ 408 (443)
.++..+||+.+|++..-+=..+.+|...|-+...-|+-...|...+
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~ 75 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTD 75 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEECh
Confidence 3899999999999999999999999999999544555444566653
No 274
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=51.45 E-value=27 Score=29.57 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=38.1
Q ss_pred HHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEE
Q 013430 356 SASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIH 405 (443)
Q Consensus 356 ~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~ 405 (443)
.+++.... +.++||+.+|+|+..+++++.++...|-+...=. ..|+.-
T Consensus 17 ~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~L 64 (145)
T 1xd7_A 17 LISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASL 64 (145)
T ss_dssp HHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEE
T ss_pred HHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCcee
Confidence 33444456 9999999999999999999999999999976644 444443
No 275
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=50.95 E-value=76 Score=25.14 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=33.8
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEec
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 398 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akID 398 (443)
..+++.+||+.+|+|..-+-..+..|...|.+..+-|
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999999999999999999999987654
No 276
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=50.89 E-value=1.1e+02 Score=25.42 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=38.1
Q ss_pred ccccCHHHHHHHh-CCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lL-gLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
....++.+|++.+ |++..-+=..|.+|...|-|.-+.|..++
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~ 88 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVP 88 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSS
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCC
Confidence 4568999999999 79999999999999999999998887666
No 277
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=49.67 E-value=20 Score=30.90 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=38.1
Q ss_pred HHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceE---EEeccC
Q 013430 355 LSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR---GSIDQV 400 (443)
Q Consensus 355 ~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~---akIDQv 400 (443)
+.+-+--.++++.+||+.+|+|+..+-+-+.+|..+|.|. +.+|..
T Consensus 9 l~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 9 LRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 3334445688999999999999999999999999999775 667754
No 278
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=49.62 E-value=47 Score=26.67 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=33.3
Q ss_pred cCHHHHHHHh-CCChHHHHHHHHhhhhcCceEEEec
Q 013430 364 ISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSID 398 (443)
Q Consensus 364 Itl~~La~lL-gLs~eeaE~~ls~MI~~grL~akID 398 (443)
+++.+|++.+ |+|..-+=+.|..|...|-+.-+.+
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 5699999999 9999999999999999999998888
No 279
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=48.63 E-value=19 Score=31.50 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=35.6
Q ss_pred hcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceE---EEecc
Q 013430 359 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR---GSIDQ 399 (443)
Q Consensus 359 k~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~---akIDQ 399 (443)
+-..++++.+||+.+|+|+.-+-+.+.+|...|.|. +.+|.
T Consensus 37 ~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~ 80 (171)
T 2e1c_A 37 QNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 80 (171)
T ss_dssp HHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCG
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECH
Confidence 335689999999999999999999999999999885 45665
No 280
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=48.41 E-value=67 Score=26.40 Aligned_cols=41 Identities=7% Similarity=0.222 Sum_probs=32.2
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
..++..+||+.+|++..-+=..+.+|...|-+.-.-|..++
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDR 93 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcccc
Confidence 35899999999999999999999999999999877776666
No 281
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=48.12 E-value=1.5e+02 Score=29.52 Aligned_cols=98 Identities=8% Similarity=-0.003 Sum_probs=70.1
Q ss_pred HHHHHHHHHHh-------ccCHH-------HHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHh
Q 013430 144 IREKLADLYES-------EQQWS-------KAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA 209 (443)
Q Consensus 144 l~~~LA~iye~-------~gd~~-------eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka 209 (443)
+-..+|.++.. .|+++ +|.+++..... ...+ .-..+|+.-+.++...+++.+|...+.++
T Consensus 274 ~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~-----~~~p-~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 274 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS-----TLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT-----TTCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH-----HhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44567777775 78887 88888877421 1111 23678888899999999999999999998
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 210 SFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 210 ~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
...... ++. ..+...+.++...+++.+|-..|..+...
T Consensus 348 l~~~p~--~~~---~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 348 LAIEDI--DPT---LVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHSSSS--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hCcccc--Cch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 775332 222 13445677777788999998888888764
No 282
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=47.86 E-value=61 Score=25.64 Aligned_cols=42 Identities=10% Similarity=0.042 Sum_probs=38.6
Q ss_pred ccccCHHHHHHHh-CCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lL-gLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...+++.+|++.+ |++..-+=..+.+|...|-|..+.|..++
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~ 67 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVP 67 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4678999999999 99999999999999999999999887665
No 283
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=47.39 E-value=31 Score=30.03 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=37.7
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEEC
Q 013430 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE 407 (443)
Q Consensus 363 ~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~ 407 (443)
.++.++||+.+|+|+..+++++.++...|-+..+=-...|+.--.
T Consensus 44 ~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 88 (159)
T 3lwf_A 44 PISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNG 88 (159)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecC
Confidence 599999999999999999999999999999987754445554333
No 284
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=47.02 E-value=31 Score=28.52 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=27.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
..++..+||+.+|+++.-+=..+.+|...|-+.-.-|..++
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~Dr 96 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNA 96 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 67999999999999999999999999999999877766655
No 285
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=46.98 E-value=25 Score=29.85 Aligned_cols=43 Identities=12% Similarity=-0.075 Sum_probs=36.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEE--EeccCCCE
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG--SIDQVEAV 403 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~a--kIDQv~gi 403 (443)
..-.|.+.||+.+|+++.++.+.+.+++..|-|.= +.|..++.
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~ 93 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIK 93 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCce
Confidence 45689999999999999999999999999998864 55665443
No 286
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=46.72 E-value=64 Score=27.22 Aligned_cols=41 Identities=5% Similarity=-0.018 Sum_probs=35.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
..++..+||+.+|++..-+=..+.+|...|-|.-.-|..++
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 101 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENR 101 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCC
Confidence 47999999999999999999999999999999988888777
No 287
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=45.49 E-value=71 Score=37.83 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=41.8
Q ss_pred HHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhh
Q 013430 147 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 212 (443)
Q Consensus 147 ~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~ 212 (443)
.+|+.+++.|+|++|...+... ..|...++.+...+++..|-...+||.+.
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA---------------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 5788888888888888777663 47888999999999999999999998654
No 288
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=45.45 E-value=1.5e+02 Score=25.72 Aligned_cols=73 Identities=15% Similarity=-0.019 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013430 181 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-------QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 253 (443)
Q Consensus 181 ~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~-------~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t~ 253 (443)
...+.++.....++..++|..|-..++|+....... ..+ .....+.-.|..+...++|.+|-.+|..+...+
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~-~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAG-FDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhcc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 457788889999999999999999999987776541 111 222355667888888999999999999988764
Q ss_pred h
Q 013430 254 K 254 (443)
Q Consensus 254 ~ 254 (443)
.
T Consensus 88 n 88 (159)
T 2hr2_A 88 N 88 (159)
T ss_dssp H
T ss_pred h
Confidence 3
No 289
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=45.27 E-value=26 Score=29.61 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=34.5
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceE---EEecc
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR---GSIDQ 399 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~---akIDQ 399 (443)
-.++++.+||+.+|+|+.-+-+.+.+|...|.|. +.+|.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 60 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 60 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 4689999999999999999999999999999874 45664
No 290
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=45.04 E-value=71 Score=29.32 Aligned_cols=64 Identities=9% Similarity=-0.107 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 183 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 183 le~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+.+......+...+++..|..+++++...... ++ .++...|..+...++|.+|-..|..+...
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VA----VYYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356778889999999999999999998776433 32 33456788899999999999999998874
No 291
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=43.90 E-value=1.4e+02 Score=24.88 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=42.3
Q ss_pred hhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 358 SKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 358 sk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
.+.-..++..+||+.+|++..-+=..+.+|...|-+.-.-|..|+ .|..++
T Consensus 41 ~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~ 94 (151)
T 4aik_A 41 NRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTE 94 (151)
T ss_dssp HHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECG
T ss_pred HHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCH
Confidence 333456778999999999999999999999999999988888887 355554
No 292
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=43.23 E-value=45 Score=28.21 Aligned_cols=43 Identities=9% Similarity=0.032 Sum_probs=35.8
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEE
Q 013430 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIH 405 (443)
Q Consensus 363 ~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~ 405 (443)
.++.++||+.+|+|+..+++++.++...|-+..+=-...|+.-
T Consensus 28 ~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L 70 (143)
T 3t8r_A 28 CISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQL 70 (143)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeee
Confidence 5999999999999999999999999999998875333344443
No 293
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=43.04 E-value=26 Score=28.95 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=32.5
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEE
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 396 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ak 396 (443)
-.++++.+||+.+|+|..-+-+.+.+|...|-+.+.
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 467899999999999999999999999999988543
No 294
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=42.59 E-value=57 Score=27.06 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=37.4
Q ss_pred hcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 359 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 359 k~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
.....++..+||+.+|++..-+=..+.+|...|-+.-.-|..++ .+...+
T Consensus 58 ~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~ 110 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTD 110 (160)
T ss_dssp HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECH
T ss_pred HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEECh
Confidence 34567999999999999999999999999999999876655544 344443
No 295
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=42.57 E-value=49 Score=27.34 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=39.3
Q ss_pred HHHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 353 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 353 NL~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
.++.+..-...++..+||+.+|+++.-+=..+.+|...|-+.-.-|..++ .|...+
T Consensus 45 ~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 103 (149)
T 4hbl_A 45 LVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTD 103 (149)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECS
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECH
Confidence 33333333478999999999999999999999999999999877665555 455554
No 296
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=41.90 E-value=1.1e+02 Score=25.68 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=38.4
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
....++.+|++.+|++..-+=..|.+|...|-|..+.|..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 467899999999999999999999999999999998877665
No 297
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=41.64 E-value=1.2e+02 Score=23.63 Aligned_cols=37 Identities=5% Similarity=0.067 Sum_probs=33.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEec
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 398 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akID 398 (443)
..+++.+||+.+|+|..-+-..+..|...|-+...-|
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4579999999999999999999999999999987644
No 298
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=41.56 E-value=40 Score=28.66 Aligned_cols=43 Identities=9% Similarity=-0.066 Sum_probs=34.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEE
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIH 405 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~ 405 (443)
..++.++||+.+|+|+..+++.+.++...|-+...=- ..|+.-
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L 71 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGL 71 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEe
Confidence 4689999999999999999999999999999876433 334443
No 299
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=41.33 E-value=1.5e+02 Score=29.08 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Q 013430 100 SRQLLQTFAQELGRLEP--ETQKEIANYTLAQIQP-RVVSFEEQVLIIREKLADLYESEQQWSKAAQML 165 (443)
Q Consensus 100 sr~~l~~~~~~l~~l~~--~~~~~~~~~~L~~i~~-~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L 165 (443)
+-..+.-+++-+..+|+ ..++.++..++.|-.. +...+=. ..|-..+|..|.+++++.+|..-+
T Consensus 93 ~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gd--p~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 93 DGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGD--PELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCC--HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHccCCHHHHHHHH
Confidence 33566667777777774 3678999999999853 2111111 245567999999999999998776
No 300
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=40.87 E-value=93 Score=24.71 Aligned_cols=63 Identities=10% Similarity=0.109 Sum_probs=45.4
Q ss_pred HHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC--E--EEECC-cchHHHHHHHHHHHHHHHHHHHH
Q 013430 369 LGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA--V--IHFED-DTEELQQWDQQIVGLCQALNDIL 431 (443)
Q Consensus 369 La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g--i--V~F~~-~~~~l~~W~~~I~~l~~~v~~v~ 431 (443)
|++.+++++.-+=..|.+|..+|-|...-+..+| - +..++ ..+.+..|......+...++++.
T Consensus 32 l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~~~~~~~i~~~l 99 (108)
T 3l7w_A 32 IKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEWSVYKMTIDGIV 99 (108)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334689999999999999999999888764344 2 22332 44677888877777777776654
No 301
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=40.85 E-value=36 Score=28.55 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=36.0
Q ss_pred hcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEE---EeccC
Q 013430 359 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG---SIDQV 400 (443)
Q Consensus 359 k~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~a---kIDQv 400 (443)
+--.+++..+||+.+|+|+.-+-+.+.+|...|.|.+ .+|..
T Consensus 13 ~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 13 QYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp TTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 3345799999999999999999999999999998865 56753
No 302
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=40.60 E-value=25 Score=26.68 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=24.4
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhh
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRM 387 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~M 387 (443)
|=+.+++.+|..+|++.+++|+.+...
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 888999999999999999999988653
No 303
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=40.53 E-value=65 Score=25.92 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=34.2
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEec
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 398 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akID 398 (443)
..++..+||+.+|+|..-+-..+..|...|-+...-+
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~ 66 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ 66 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec
Confidence 4579999999999999999999999999999988776
No 304
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=39.93 E-value=86 Score=32.88 Aligned_cols=84 Identities=20% Similarity=0.031 Sum_probs=56.6
Q ss_pred HHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhh------ccccHHHHHHH
Q 013430 151 LYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV------SSSQQEVLNLQ 224 (443)
Q Consensus 151 iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~------~~~~d~~lk~~ 224 (443)
+....|++++|.++...+. +. ..|-..+++++..+|+..|+..+.++.+.- ...++++.-
T Consensus 661 ~~l~~~~~~~A~~~~~~~~---------~~---~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~-- 726 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES---------AE---MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGL-- 726 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC---------CH---HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH--
T ss_pred hhhhcCCHHHHHHHHHhhC---------cH---hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHH--
Confidence 3455677777777765542 11 478899999999999999999998764432 112233221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013430 225 YKVCYARILDLKRKFLEAALRYYDIS 250 (443)
Q Consensus 225 y~~~~ari~~~~r~f~eAa~~y~e~~ 250 (443)
..++++....++|..|...|+..-
T Consensus 727 --~~~~~~a~~~~~~~~A~~~~~~~g 750 (814)
T 3mkq_A 727 --VTLAKDAETTGKFNLAFNAYWIAG 750 (814)
T ss_dssp --HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred --HHHHHHHHHcCchHHHHHHHHHcC
Confidence 235677777888988888877654
No 305
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=39.35 E-value=77 Score=27.83 Aligned_cols=52 Identities=25% Similarity=0.171 Sum_probs=39.6
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCcchHHHHHH
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWD 417 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~~~~l~~W~ 417 (443)
--.+|-++||..+|++.+-+-+.+.+|..+|-|.- ..|-|...++ +.|.++.
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~-~~L~~~~ 229 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVSERMLAL----DGKRIKIIDC-DRLQKTA 229 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH-HHHHHHH
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee----CCCEEEEeCH-HHHHHHh
Confidence 35689999999999999999999999999998853 2455555443 4455443
No 306
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=38.71 E-value=1.5e+02 Score=24.53 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=28.8
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
..+|..+||+.+|+++.-+=..+.+|...|-+. +.|..|+
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~Dr 90 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADA 90 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--------
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCC
Confidence 459999999999999999999999999999884 4565555
No 307
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=38.64 E-value=80 Score=27.34 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=39.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCcchHHHHHH
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWD 417 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~~~~l~~W~ 417 (443)
-.+|-++||+.+|++++-+-+.+.+|-.+|-|.- ..|-|...++ +.|.++.
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~-~~L~~~a 218 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEGLVKL----SRGKITILDS-KRLETLQ 218 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH-HHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeCH-HHHHHHh
Confidence 3789999999999999999999999999998853 3555555443 4555443
No 308
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=38.47 E-value=2.3e+02 Score=26.00 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=41.1
Q ss_pred hcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECC
Q 013430 359 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 408 (443)
Q Consensus 359 k~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~ 408 (443)
-.....|.++||+.+|+|+..++..+.+|...|-+. + ..+|.|..+.
T Consensus 174 l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~-~--~~~~~~~~~~ 220 (232)
T 2qlz_A 174 LLNGRATVEELSDRLNLKEREVREKISEMARFVPVK-I--INDNTVVLDE 220 (232)
T ss_dssp HHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE-E--ETTTEEEECH
T ss_pred HhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE-E--ecCCeEEecH
Confidence 347899999999999999999999999999999887 3 3578888875
No 309
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=38.15 E-value=98 Score=23.88 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=37.1
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEEC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE 407 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~ 407 (443)
...++.+||+.+|+|..-+-..+..|...|-+..+-+.........
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~ 80 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLT 80 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEC
Confidence 4589999999999999999999999999999987655433333333
No 310
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=38.13 E-value=27 Score=27.00 Aligned_cols=36 Identities=11% Similarity=0.334 Sum_probs=31.3
Q ss_pred hcccccCHHHHHHHh-CCChHHHHHHHHhhhhcCceE
Q 013430 359 KLYTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMR 394 (443)
Q Consensus 359 k~Ys~Itl~~La~lL-gLs~eeaE~~ls~MI~~grL~ 394 (443)
+.=+.--|.++++.| +..+-++-+.+..||.+|+|.
T Consensus 17 ~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 17 GSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp HHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred cccccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 344566689999999 999999999999999999984
No 311
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=37.76 E-value=45 Score=32.93 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=38.4
Q ss_pred HHHHHH---HHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEE
Q 013430 349 MIEHNL---LSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 395 (443)
Q Consensus 349 viEhNL---~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~a 395 (443)
+.++|. +.+.+-...+|-.+||+.+|+|..-+-+.+.+|+.+|.+..
T Consensus 13 ~r~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 345553 33444578899999999999999999999999999998854
No 312
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=37.20 E-value=1.4e+02 Score=23.26 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=37.6
Q ss_pred ccccCHHHHHHHh-CCChHHHHHHHHhhhhcCceEEEeccCCC
Q 013430 361 YTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSIDQVEA 402 (443)
Q Consensus 361 Ys~Itl~~La~lL-gLs~eeaE~~ls~MI~~grL~akIDQv~g 402 (443)
...+++.+|++.+ |++..-+=..+.+|...|-+..+.|..++
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4568999999999 59999999999999999999988887665
No 313
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=36.73 E-value=22 Score=27.76 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=30.8
Q ss_pred cCHHHHHHHhCCChHHHHHHHHhhhhcCceEE
Q 013430 364 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 395 (443)
Q Consensus 364 Itl~~La~lLgLs~eeaE~~ls~MI~~grL~a 395 (443)
+|..+||+.||+|...+-+.|-+|..+|.|..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 99999999999999999999999999999876
No 314
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=36.58 E-value=1.4e+02 Score=35.52 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhh
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 210 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~ 210 (443)
+-..+|+.+++.|+|++|.+.+..- + =.+.|.+.+..+...|+|..|-.++.+|.
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA--d----------D~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA--D----------DPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc--C----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3457888899999999998887441 1 13356667777777788887777776544
No 315
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.48 E-value=3e+02 Score=26.49 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=27.9
Q ss_pred HHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCC
Q 013430 148 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDD 198 (443)
Q Consensus 148 LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D 198 (443)
+-+=|...||.+||...+.++..- ...-++.-..+-..++.++
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~~p--------~~~~~~v~~~i~~~le~~~ 59 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELASP--------SLLFIFVRHGVESTLERSA 59 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCCG--------GGHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCc--------ccHHHHHHHHHHHHhCCCH
Confidence 334455669999999999998532 2344555556666666543
No 316
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=35.69 E-value=1.3e+02 Score=30.56 Aligned_cols=104 Identities=12% Similarity=-0.029 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHH
Q 013430 141 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 220 (443)
Q Consensus 141 ~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~ 220 (443)
..+--.+||+.+.+.|+|.||+-.|. ++.+. -..++...+.-....- -+-..-.+.+-+.++++|...+..++.|+
T Consensus 34 ~i~~l~~L~~~h~~~~ny~EAa~~l~-lhA~l--~~w~~~~~~~~~~~~~-~~~~qt~~~~ke~L~~~~i~~f~kg~~~E 109 (436)
T 2yin_A 34 YIRYLYKLRDLHLDCDNYTEAAYTLL-LHTWL--LKWSDEQCASQVMQTG-QQHPQTHRQLKETLYETIIGYFDKGKMWE 109 (436)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH-HHHTT--CCSSCCC---------------CHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHH-HHHHH--hCCCccccCcccccCC-CCccccHHHHHHHHHHHHHHHHHhcCcHH
Confidence 33455789999999999999999884 23333 1112221111100000 00001112223345555666665556666
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 013430 221 LNLQYKVCYARILDLK-RKFLEAALRYYD 248 (443)
Q Consensus 221 lk~~y~~~~ari~~~~-r~f~eAa~~y~e 248 (443)
.-+..+...+.+|... +||..-+..+..
T Consensus 110 ~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~ 138 (436)
T 2yin_A 110 EAISLCKELAEQYEMEIFDYELLSQNLIQ 138 (436)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555555555554 666666555433
No 317
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=34.72 E-value=35 Score=27.93 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=39.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEEC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFE 407 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~ 407 (443)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++ .+...
T Consensus 52 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT 101 (147)
T 1z91_A 52 HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLT 101 (147)
T ss_dssp HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEEC
T ss_pred CCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEEC
Confidence 357899999999999999999999999999999877665444 35544
No 318
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=34.49 E-value=29 Score=31.37 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=36.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCc----------chHHHHHHHHHHHHHHHHH
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD----------TEELQQWDQQIVGLCQALN 428 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~----------~~~l~~W~~~I~~l~~~v~ 428 (443)
--.+|-++||..+|++.+-+-+.+.+|..+|-|.- ..|-|...++ ..-...|+..+++|-..++
T Consensus 175 ~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~~~~~ 248 (250)
T 3e6c_C 175 TMPLSQKSIGEITGVHHVTVSRVLASLKRENILDK----KKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLAAALD 248 (250)
T ss_dssp ECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSEEEESCHHHHHHHHTSSCCCC---------------
T ss_pred cCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe----CCCEEEEecHHHHHHHHccCcccccCCchhHHHHHHhhc
Confidence 34689999999999999999999999999998853 2343433331 1224557766666655443
No 319
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=33.63 E-value=83 Score=27.51 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=38.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCcchHHHHH
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQW 416 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~~~~l~~W 416 (443)
-.+|-++||+.+|++.+-+-+.+.+|..+|-|.- ..|.|...++ +.|.++
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~-~~L~~~ 225 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHRGWIRL----EGKSVLISDS-ERLARR 225 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH-HHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe----cCCEEEEcCH-HHHHHh
Confidence 3589999999999999999999999999998753 2355555442 445443
No 320
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=33.51 E-value=1.4e+02 Score=24.13 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=32.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEE
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 396 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ak 396 (443)
..+++.+||+.+|+|..-+-..+..|...|.+...
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 56899999999999999999999999999999764
No 321
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=33.47 E-value=1.1e+02 Score=24.80 Aligned_cols=60 Identities=23% Similarity=0.192 Sum_probs=47.9
Q ss_pred HHHHHHHHHHh----ccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh----cCCHHHHHHHHHHhhhh
Q 013430 144 IREKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFL 212 (443)
Q Consensus 144 l~~~LA~iye~----~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~l~Ka~~~ 212 (443)
-...|+.+|.. .+|+++|.+.+..-- +. + -.+-+.....+|.. .+|+.+|..+++|+...
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~--g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GL--N------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cC--C------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 35789999998 899999999998742 21 1 13456777888888 89999999999998765
No 322
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=33.45 E-value=2.5e+02 Score=24.70 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHhhc--cccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChh-------------
Q 013430 116 PETQKEIANYTLAQIQ--PRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT------------- 180 (443)
Q Consensus 116 ~~~~~~~~~~~L~~i~--~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~------------- 180 (443)
-+..+-++...+.... +...+- .+.+++-..+|+.+..+|+|..|...+.....-. +.+.+.
T Consensus 36 Y~sA~~La~lLlSl~~~~~~~~sp-~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~--k~l~k~~s~~~~~~~~ss~ 112 (167)
T 3ffl_A 36 HSNVRLLSSLLLTLSNNNPELFSP-PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK--KALSKTSKVRPSTGNSAST 112 (167)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSSCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HCC----------------
T ss_pred HHHHHHHHHHHHHhhcCCcccccH-HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH--HHHhcCCCccccccccCCC
Confidence 4455555555444432 222233 3345677899999999999999999998843221 111111
Q ss_pred -------hHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhh
Q 013430 181 -------FRLSKCVQIARLYLEDDDAVNAEAFINKASFL 212 (443)
Q Consensus 181 -------~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~ 212 (443)
.=+|+-.++++.|.+.+++..|-..+..+-.+
T Consensus 113 p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 113 PQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 12467777888888888888888887755443
No 323
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=33.38 E-value=1.8e+02 Score=22.92 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=34.2
Q ss_pred ccccCHHHHHHHhC----CChHHHHHHHHhhhhcCceEEEec
Q 013430 361 YTNISFEELGTLLG----IAPQKAEKIASRMIFEDRMRGSID 398 (443)
Q Consensus 361 Ys~Itl~~La~lLg----Ls~eeaE~~ls~MI~~grL~akID 398 (443)
...++..+||+.++ ++..-+=..+.+|...|-+.-.-|
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 46799999999999 889999999999999999976666
No 324
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=33.10 E-value=1.9e+02 Score=23.26 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=36.2
Q ss_pred cccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEEC
Q 013430 360 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE 407 (443)
Q Consensus 360 ~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~ 407 (443)
.-..+++.+||+.+|++..-+-+.+.+|...|-+.-. + +.+...
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~--~--~~~~Lt 71 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK--E--DGVWIT 71 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T--TEEEEC
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec--C--CeEEEC
Confidence 3467999999999999999999999999999988642 2 445554
No 325
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=33.09 E-value=1.4e+02 Score=24.31 Aligned_cols=58 Identities=14% Similarity=0.230 Sum_probs=38.9
Q ss_pred cCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCcchHHHHHHHHHHHHH
Q 013430 364 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLC 424 (443)
Q Consensus 364 Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~~~~l~~W~~~I~~l~ 424 (443)
+..++++..+|+++++++..+..++..|++.. ++..++...+.. +..+.|...+...+
T Consensus 18 ~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~-~~~~~~~~~~~~--~~~~~l~~~l~~~L 75 (135)
T 2v9v_A 18 LDWQEAATRASLSLEETRKLLQSMAAAGQVTL-LRVENDLYAIST--ERYQAWWQAVTRAL 75 (135)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEE-EEETTEEEEEEH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEE-EecCCCeEEecH--HHHHHHHHHHHHHH
Confidence 43499999999999999999999999999754 333222223432 44555555554433
No 326
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=32.97 E-value=56 Score=32.63 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=38.0
Q ss_pred HHHHHHHHH---hhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEE
Q 013430 349 MIEHNLLSA---SKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 395 (443)
Q Consensus 349 viEhNL~~i---sk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~a 395 (443)
+.++|.+.+ .+-...+|-.+||+.+|+|..-+-+.+.+|+.+|.+..
T Consensus 36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 345554443 33467899999999999999999999999999998854
No 327
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=32.60 E-value=59 Score=25.00 Aligned_cols=43 Identities=12% Similarity=-0.059 Sum_probs=35.7
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 408 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~ 408 (443)
..++..+||+.+|+|..-+-+.+..|...|.+...- |.....+
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~----g~y~l~~ 84 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG----ERWVVTD 84 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC----CEEEECC
Confidence 458999999999999999999999999999997542 5544443
No 328
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=31.84 E-value=80 Score=28.12 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=33.2
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEE
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 396 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ak 396 (443)
..++..+||+.+|+|+.-+-+.+.+|...|.|.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999999999999999876
No 329
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=31.83 E-value=89 Score=26.72 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=38.0
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCcchHHHHH
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQW 416 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~~~~l~~W 416 (443)
-.+|-++||+.+|++.+-+-+.+.+|..+|-|.- ..|-|...++ +.|.++
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~-~~L~~~ 187 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRREGLIAT----AYRRVYLLDL-AALERE 187 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE----ETTEEEECCH-HHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEeCH-HHHHHH
Confidence 3588999999999999999999999999998753 2455555442 445443
No 330
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=31.70 E-value=74 Score=22.74 Aligned_cols=29 Identities=17% Similarity=0.430 Sum_probs=26.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhh
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIF 389 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~ 389 (443)
+...|.+++|+.+|+|+.-|...+.+...
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 48999999999999999999998887764
No 331
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=31.61 E-value=2.1e+02 Score=23.17 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=33.2
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEec
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 398 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akID 398 (443)
...++.+||+.+|+|..-+-..+..+...|-+...-|
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3589999999999999999999999999999977544
No 332
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=31.61 E-value=77 Score=27.43 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=36.6
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEE
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIH 405 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~ 405 (443)
..++.++||+.+|+|+..+++++.++-..|-+..+=-...|+.-
T Consensus 27 ~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~L 70 (162)
T 3k69_A 27 SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQL 70 (162)
T ss_dssp SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEe
Confidence 45999999999999999999999999999998766444445543
No 333
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=31.54 E-value=2.1e+02 Score=23.16 Aligned_cols=67 Identities=10% Similarity=0.042 Sum_probs=44.8
Q ss_pred CCChHHHHHHHHhhhhcCceEEEecc-CCC--EEEE--C-CcchHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013430 374 GIAPQKAEKIASRMIFEDRMRGSIDQ-VEA--VIHF--E-DDTEELQQWDQQIVGLCQALNDILDSMAKKGLP 440 (443)
Q Consensus 374 gLs~eeaE~~ls~MI~~grL~akIDQ-v~g--iV~F--~-~~~~~l~~W~~~I~~l~~~v~~v~~~I~ke~~~ 440 (443)
++++--+=..|.+|-.+|-|...-+. .+| -..| + ...+.+..|......+.+.++.+...-.....|
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~~~~~~~i~~il~~~~~~~~~ 113 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKWDFVSSKINVLKSSNSRWSHP 113 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcccccCcCC
Confidence 78999999999999999999988752 222 2333 2 244678888888888888888776655544444
No 334
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=31.52 E-value=2.1e+02 Score=23.18 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=36.8
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 408 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~ 408 (443)
..++..+||+.+|+|..-+=+.+.+|...|-+.-. .++.+...+
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~ 64 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTS 64 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEch
Confidence 56999999999999999999999999999998754 335566553
No 335
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=31.40 E-value=2.6e+02 Score=26.96 Aligned_cols=121 Identities=10% Similarity=0.091 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhcCCChHhhHHhhhcccCCCchhHHHHhhcccc-chhhhcccccccccCCCCcchhhHhhhhhhcCCcce
Q 013430 19 EQYKHILSSVISSNDIVQAKKFIDHSYLSPSLSIFLIKNFRLG-FFEIHYFGRKQIFVRPYPFSIFKFFFCAVLSDDVPL 97 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (443)
+.||.+...-++.+..+.+.+++-+ -+..+.++=..| -++ +-.-+|+.+...++.+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~------ga~~ll~~~Q~~sa~D-----------------La~llvev~~~~~~~~ 90 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ------GALSFLKAKQGGSGTD-----------------LIFYLLEVYDLAEVKV 90 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHTTCHHHHHH-----------------HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH------HHHHHHHCCCcchHHH-----------------HHHHHHHHHHHcCCCC
Confidence 4588888888887776655444443 122222221111 011 1122344444444433
Q ss_pred eecHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHhccCHHHHHHHHh
Q 013430 98 VVSRQLLQTFAQELGRLEP--ETQKEIANYTLAQIQPR-VVSFEEQVLIIREKLADLYESEQQWSKAAQMLS 166 (443)
Q Consensus 98 v~sr~~l~~~~~~l~~l~~--~~~~~~~~~~L~~i~~~-~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~ 166 (443)
+..-+..+++-+..+|+ ..++.+...++.|-... ...+- ...+-..+|..|.++|++.+|..-+.
T Consensus 91 --~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~G--dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 91 --DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFG--DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp --SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56677777788877763 35899999999998422 11111 12456789999999999999988664
No 336
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=31.09 E-value=44 Score=28.78 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=30.7
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceE
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 394 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ 394 (443)
-.+|-++||..+|++++-+-+.+.+|..+|-|.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 368999999999999999999999999999885
No 337
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=30.92 E-value=54 Score=33.59 Aligned_cols=24 Identities=8% Similarity=-0.081 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 229 YARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 229 ~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+.+|...|.|.+|.+.|...+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCC
Confidence 345677788999998888887753
No 338
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=30.46 E-value=11 Score=35.97 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=0.0
Q ss_pred ccCHHHHHHHh-CCChHHHHHHHHhhhhcCceEEEecc
Q 013430 363 NISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSIDQ 399 (443)
Q Consensus 363 ~Itl~~La~lL-gLs~eeaE~~ls~MI~~grL~akIDQ 399 (443)
=|+++.|++.| +++++++.+.+-.|+.+|.|+-.||-
T Consensus 224 Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 224 GLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp --------------------------------------
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 45667888877 79999999999999999999999984
No 339
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=29.71 E-value=2.7e+02 Score=23.97 Aligned_cols=48 Identities=10% Similarity=0.031 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhh
Q 013430 199 AVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLK-----------RKFLEAALRYYDISQI 252 (443)
Q Consensus 199 ~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~-----------r~f~eAa~~y~e~~~t 252 (443)
+..|...+.++..+-.. +.+. +.+.|..|... ++|.+|..+|..+...
T Consensus 62 ~~eAi~~le~AL~ldP~--~~~A----~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK--KDEA----VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC--cHHH----HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 55788888887766443 2221 12345555443 6999999999999985
No 340
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=29.46 E-value=1.3e+02 Score=34.08 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhhhhhccCC--cCCh--------------hhHHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 013430 145 REKLADLYESEQQWSKAAQMLSGIDLDSGMR--VIDD--------------TFRLSKCVQIARLYLEDDDAVNAEAFINK 208 (443)
Q Consensus 145 ~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~--~~~~--------------~~Kle~~L~i~RL~L~~~D~~~A~~~l~K 208 (443)
+..+|..|...|++++|+..++.--..-+.. .... .....+|+..++++=..+-+..+-.+.+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5788999999999999999997742110000 0000 11246899999999988888888888777
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013430 209 ASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDI 249 (443)
Q Consensus 209 a~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~ 249 (443)
|-.... .+++.++..++...-+.+..-++|.+|+......
T Consensus 925 Ai~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 925 ADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 655432 2456666555554555677778888876555433
No 341
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=28.91 E-value=1.1e+02 Score=27.11 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=38.0
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEEC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFE 407 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~ 407 (443)
...++..+||+.+|++..-+=..+.+|...|-|.-.-|..++ .|...
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 109 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLT 109 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEEC
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEEC
Confidence 357999999999999999999999999999999988877666 44554
No 342
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=28.78 E-value=71 Score=20.33 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=24.2
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhc
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFE 390 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~ 390 (443)
....+..++|+.+|+|..-+...+.+.-..
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYLKDPVSY 48 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHCSTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhhHHhc
Confidence 456799999999999999888887665433
No 343
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=28.54 E-value=77 Score=27.98 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=32.7
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECC
Q 013430 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 408 (443)
Q Consensus 363 ~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~ 408 (443)
.+|-++||..+|++.+-+-+.+.+|-.+| | ..+ .|-|...+
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~~~--~~~i~I~d 218 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAG-V--TVK--RNHAEIED 218 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--ECC--TTEEEESC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--Eee--CCEEEEcC
Confidence 45678999999999999999999999999 6 333 45555543
No 344
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=28.33 E-value=52 Score=28.52 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=40.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCcchHHHHHH
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWD 417 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~~~~l~~W~ 417 (443)
--.+|-++||+.+|++++-+-+.+.+|-.+|-|. + ..|-|...++ +.|.++.
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~--~--~~~~i~i~d~-~~L~~~a 212 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHALAEEGVVR--L--GPGTVEVREA-ALLEEIA 212 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE--E--ETTEEEESCH-HHHHHHH
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE--e--cCCEEEEeCH-HHHHHHh
Confidence 4678999999999999999999999999999985 2 2455555443 4555544
No 345
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=28.21 E-value=54 Score=28.32 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=38.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCcchHHHHH
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQW 416 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~~~~l~~W 416 (443)
-.+|-++||+.+|++.+-+-+.+.+|..+|-|.- ..|-|...++ +.|.++
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~-~~L~~~ 194 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIRS----GYGKIQLLDL-KGLKEL 194 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH-HHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeCH-HHHHHH
Confidence 4589999999999999999999999999999862 2455555443 444443
No 346
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=28.14 E-value=2.3e+02 Score=24.87 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCC
Q 013430 119 QKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDD 198 (443)
Q Consensus 119 ~~~~~~~~L~~i~~~~~sfe~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D 198 (443)
..++++.++..+.+.+-..-+--+.|=.+.|.+ ++.+|.++|.++.+...-- .+.- ..+|+.-++.-+..+|
T Consensus 38 lrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--hKkF-----AKiwi~~AqFEiRqgn 109 (161)
T 4h7y_A 38 LIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--CKKF-----AFVHISFAQFELSQGN 109 (161)
T ss_dssp HHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH--CTTB-----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH--hHHH-----HHHHHHHHHHHHHccc
Confidence 346666666666655533444455566667755 5669999999999886432 2332 6778888888888999
Q ss_pred HHHHHHHHHHhhhhh
Q 013430 199 AVNAEAFINKASFLV 213 (443)
Q Consensus 199 ~~~A~~~l~Ka~~~~ 213 (443)
..+|+.++-++...-
T Consensus 110 l~kARkILg~AiG~~ 124 (161)
T 4h7y_A 110 VKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999987754
No 347
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=28.05 E-value=54 Score=28.25 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=30.5
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHhhhhcCceE
Q 013430 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 394 (443)
Q Consensus 363 ~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ 394 (443)
.+|-++||+.+|++.+-+-+.+.+|-.+|.|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 68999999999999999999999999999886
No 348
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=27.99 E-value=1.3e+02 Score=24.00 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=38.9
Q ss_pred ccccc-CHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECC
Q 013430 360 LYTNI-SFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 408 (443)
Q Consensus 360 ~Ys~I-tl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~ 408 (443)
+=..+ +...||+.||+|..-+-+-+..+..+|-+..+ +..|+..-..
T Consensus 29 ~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~~~ 76 (113)
T 3tqn_A 29 EGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVKAG 76 (113)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECTT
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEeCC
Confidence 45677 89999999999999999999999999998643 5667655543
No 349
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=27.96 E-value=56 Score=28.78 Aligned_cols=34 Identities=3% Similarity=0.100 Sum_probs=31.4
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceE
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 394 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ 394 (443)
--.+|-++||..+|++++-+-+.+.+|-.+|-|.
T Consensus 173 ~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 173 VLPLGTQDIMARTSSSRETVSRVLKRLEAHNILE 206 (231)
T ss_dssp EECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 4468999999999999999999999999999886
No 350
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=27.54 E-value=2.4e+02 Score=30.81 Aligned_cols=60 Identities=17% Similarity=-0.003 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013430 182 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYARILDLKRKFLEAALRYYD 248 (443)
Q Consensus 182 Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~-~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e 248 (443)
.-++...|++.++.++|+.-|-...++|.+..... ..|.. .+.+|..-++|..|--....
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~-------La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYN-------LARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHH-------HHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHH-------HHHHHHHhccHHHHHHHHhc
Confidence 35678889999999999999999999987766542 45654 46778888999998655443
No 351
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=27.53 E-value=55 Score=28.68 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=30.3
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHhhhhcCceE
Q 013430 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 394 (443)
Q Consensus 363 ~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ 394 (443)
.++-++||+.+|++.+-+-+.+.+|..+|.|.
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 47899999999999999999999999999886
No 352
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.28 E-value=75 Score=21.89 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=25.4
Q ss_pred cccccCHHHHHHHhCCChHHHHHHHHhhhh
Q 013430 360 LYTNISFEELGTLLGIAPQKAEKIASRMIF 389 (443)
Q Consensus 360 ~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~ 389 (443)
++.-.+.+++|+.+|+|+.-+...+.+...
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 466778999999999999999988887653
No 353
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=27.12 E-value=58 Score=23.70 Aligned_cols=27 Identities=19% Similarity=0.554 Sum_probs=24.1
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhh
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMI 388 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI 388 (443)
...|.+++|+.+|+|+.-+...+.+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 789999999999999999998877655
No 354
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=27.11 E-value=1.7e+02 Score=26.81 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=37.7
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEEC
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE 407 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~ 407 (443)
..||...+++.+|+|+.-+...|-.|+.+|.+.-- |++.|+-+|.
T Consensus 167 g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D-~~~eg~~y~p 211 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD-DSVEGLRFYP 211 (218)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-ESSSCEEEEE
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE-CCCCceEEeh
Confidence 46999999999999999999999999999987632 3777855553
No 355
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=26.84 E-value=1.2e+02 Score=30.09 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcc---CHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhc----CCHHHHHHHHHHhhhhhcccc
Q 013430 145 REKLADLYESEQ---QWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED----DDAVNAEAFINKASFLVSSSQ 217 (443)
Q Consensus 145 ~~~LA~iye~~g---d~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~----~D~~~A~~~l~Ka~~~~~~~~ 217 (443)
...|+.+|...| ++.+|.+.+...- +. +.. ....+.....+|... +|+.+|..++.++. .+
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~--g~~----~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g 246 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGV-SR--GTV----TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PG 246 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-HT--TCS----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GG
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHH-HC--CCH----HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CC
Confidence 467888999999 8899988887742 21 221 122334455566554 79999999999987 12
Q ss_pred HHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHh
Q 013430 218 QEVLNLQYKVCYARI-L--DLKRKFLEAALRYYDISQ 251 (443)
Q Consensus 218 d~~lk~~y~~~~ari-~--~~~r~f~eAa~~y~e~~~ 251 (443)
+++-... .|.+ + ...+++.+|...|..+..
T Consensus 247 ~~~a~~~----Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 247 YPASWVS----LAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp STHHHHH----HHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred CHHHHHH----HHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 3332221 2333 3 347899999988888775
No 356
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=26.68 E-value=60 Score=28.37 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=38.7
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccC-CCEEEECCcchHHHHH
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV-EAVIHFEDDTEELQQW 416 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv-~giV~F~~~~~~l~~W 416 (443)
--.+|-++||+.+|++.+-+-+.+.+|..+|-|. .. .|.|...++ +.|.++
T Consensus 165 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~~i~i~d~-~~L~~~ 216 (220)
T 2fmy_A 165 ELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE----RVNQRTLLLKDL-QKLKEF 216 (220)
T ss_dssp ECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----ESSSSEEEESCH-HHHHHH
T ss_pred eccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----EcCCCEEEEcCH-HHHHHH
Confidence 3468999999999999999999999999999874 22 345555432 445544
No 357
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=26.46 E-value=61 Score=29.09 Aligned_cols=33 Identities=6% Similarity=0.176 Sum_probs=30.9
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceE
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 394 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ 394 (443)
-.+|-++||..+|++.+-+-+.+.+|..+|-|.
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 224 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS 224 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE
Confidence 468899999999999999999999999999886
No 358
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=25.64 E-value=3.1e+02 Score=24.22 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=57.3
Q ss_pred HhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhh------ccccH-HHHHHHH
Q 013430 153 ESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV------SSSQQ-EVLNLQY 225 (443)
Q Consensus 153 e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~------~~~~d-~~lk~~y 225 (443)
.+-|+++.|.++...+.-+ ..|-+.....|..+|+.-|+..+.++.+.- ...++ ..++
T Consensus 16 L~lg~l~~A~e~a~~l~~~------------~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~--- 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLNDS------------ITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLS--- 80 (177)
T ss_dssp HHTTCHHHHHHHHHHHCCH------------HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH---
T ss_pred HhcCCHHHHHHHHHHhCCH------------HHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHH---
Confidence 4789999999998775322 268888999999999999999998765421 11122 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013430 226 KVCYARILDLKRKFLEAALRYYDISQ 251 (443)
Q Consensus 226 ~~~~ari~~~~r~f~eAa~~y~e~~~ 251 (443)
-++++-..+++|.-|...|+..-.
T Consensus 81 --kla~iA~~~g~~n~af~~~l~lGd 104 (177)
T 3mkq_B 81 --KMQNIAQTREDFGSMLLNTFYNNS 104 (177)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred --HHHHHHHHCccHHHHHHHHHHcCC
Confidence 356777778888887777765543
No 359
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=25.38 E-value=1.4e+02 Score=26.40 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=38.4
Q ss_pred ccCHHHHHHHhCCCh-HHHHHHHHhhhhcCceEEEeccCCCEEEECCcchHHHHHH
Q 013430 363 NISFEELGTLLGIAP-QKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWD 417 (443)
Q Consensus 363 ~Itl~~La~lLgLs~-eeaE~~ls~MI~~grL~akIDQv~giV~F~~~~~~l~~W~ 417 (443)
.+|-++||+.+|++. +-+-+.+.+|-.+|-|.-. .|-|...++ +.|.++.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~----~~~i~I~d~-~~L~~~~ 219 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK----NSCFYVQNL-DYLKRYA 219 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE----TTEEEESCH-HHHHHHC
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEec----CCEEEEeCH-HHHHHHh
Confidence 688999999999999 8999999999999987532 455555442 4455444
No 360
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.18 E-value=1.6e+02 Score=22.47 Aligned_cols=64 Identities=13% Similarity=-0.024 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhcCC---HHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013430 183 LSKCVQIARLYLEDDD---AVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 252 (443)
Q Consensus 183 le~~L~i~RL~L~~~D---~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~~~r~f~eAa~~y~e~~~t 252 (443)
.+++..........++ ...|...+.++...-.. ++. .. ...|..+...++|.+|..+|..+...
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~--~~r--A~--~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY--NEA--AL--SLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT--CHH--HH--HHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC--CHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455555555554444 78999999998876543 222 11 23588899999999999999999874
No 361
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=25.04 E-value=59 Score=28.54 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceE
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 394 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ 394 (443)
-.+|-++||+.+|++.+-+-+.+.+|..+|-|.
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 358999999999999999999999999999875
No 362
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=25.03 E-value=2.9e+02 Score=22.70 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=31.5
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEE
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 396 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ak 396 (443)
..++..+||+.+|+|..-+-+.+.+|...|-+.-+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 46899999999999999999999999999987654
No 363
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=24.46 E-value=74 Score=25.02 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=31.7
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEE
Q 013430 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 396 (443)
Q Consensus 363 ~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ak 396 (443)
.++..+||+.+|+|..-+-+.+..|..+|-+...
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999999999999999999998754
No 364
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=24.45 E-value=58 Score=28.47 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=31.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhhhhcCceE
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 394 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ 394 (443)
--.+|-++||+.+|++.+-+-+.+.+|-.+|-|.
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 3467889999999999999999999999999885
No 365
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=24.37 E-value=58 Score=31.89 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=35.8
Q ss_pred HHHHHHH---HHHHhhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEE
Q 013430 347 RAMIEHN---LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 395 (443)
Q Consensus 347 ~~viEhN---L~~isk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~a 395 (443)
+++.++| |+...+ ...+|-.+||+.+|||..-+-+.+.+|+.+|.+..
T Consensus 15 ~~~~~~~~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 15 KSVRAENISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp -------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3444444 344455 78899999999999999999999999999998854
No 366
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=24.14 E-value=61 Score=28.76 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=30.8
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceE
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 394 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ 394 (443)
-.+|-++||+.+|++.+-+-+.+.+|..+|-|.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIE 217 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999999999885
No 367
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=23.99 E-value=2.3e+02 Score=23.49 Aligned_cols=60 Identities=7% Similarity=0.158 Sum_probs=46.1
Q ss_pred ccccCHHHHHHHh-CCChHHHHHHHHhhhhcCceEEEeccCCC-EEEE--CCc-------chHHHHHHHHH
Q 013430 361 YTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSIDQVEA-VIHF--EDD-------TEELQQWDQQI 420 (443)
Q Consensus 361 Ys~Itl~~La~lL-gLs~eeaE~~ls~MI~~grL~akIDQv~g-iV~F--~~~-------~~~l~~W~~~I 420 (443)
....++.+|++.+ |+|..-+=..|.+|..+|-+.-+.+..++ .+.+ ++. -..+.+|...=
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~~ 107 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESN 107 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHH
Confidence 5678999999999 99999999999999999999888776655 2333 331 24567776543
No 368
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=23.66 E-value=73 Score=22.45 Aligned_cols=29 Identities=10% Similarity=0.159 Sum_probs=24.8
Q ss_pred cccccCHHHHHHHhCCChHHHHHHHHhhh
Q 013430 360 LYTNISFEELGTLLGIAPQKAEKIASRMI 388 (443)
Q Consensus 360 ~Ys~Itl~~La~lLgLs~eeaE~~ls~MI 388 (443)
++...|.+++|+.+|+|+.-+...+.+..
T Consensus 28 ~~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 28 QLLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47789999999999999998887777654
No 369
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=23.49 E-value=66 Score=27.06 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=24.7
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhh
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRM 387 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~M 387 (443)
|=+.+++++|+.+|++.+++|..+...
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~i 63 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQKV 63 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 888999999999999999999988754
No 370
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=23.31 E-value=60 Score=26.81 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=31.8
Q ss_pred cCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccC
Q 013430 364 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 400 (443)
Q Consensus 364 Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv 400 (443)
+|.+.||+.+|+|+..+-+.+.+++..|-|.=+-|..
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~ 88 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTD 88 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC---
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEEC
Confidence 8999999999999999999999999999887655533
No 371
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=23.29 E-value=1.7e+02 Score=23.73 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=38.5
Q ss_pred ccccc-CHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECC
Q 013430 360 LYTNI-SFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 408 (443)
Q Consensus 360 ~Ys~I-tl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~ 408 (443)
+=.++ |...||+.||+|..-+-+-+..+..+|-|..+ +..|...-..
T Consensus 33 ~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~ 80 (125)
T 3neu_A 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVTSD 80 (125)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred CCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEecC
Confidence 45677 69999999999999999999999999998753 5567655443
No 372
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=23.11 E-value=1.5e+02 Score=26.60 Aligned_cols=64 Identities=9% Similarity=-0.017 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHH
Q 013430 139 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEA 204 (443)
Q Consensus 139 ~q~a~l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~ 204 (443)
.|+++....++.++..++||.+|.+.|..--..|......-+..+-.||--++|.+ |+.+....
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~--G~iP~~~l 74 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLL--GHMPTVEL 74 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT--TCEECHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHc--CCCCCHHH
Confidence 56778899999999999999999999888655552221122334556666666665 44554433
No 373
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=22.92 E-value=1.6e+02 Score=27.23 Aligned_cols=59 Identities=5% Similarity=0.033 Sum_probs=39.1
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEECCc-------chHHHHHHHHHHH
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD-------TEELQQWDQQIVG 422 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~~~-------~~~l~~W~~~I~~ 422 (443)
..+++.+||+.+|+|..-+-+.+.+|...|-+... +.++.+...+. ......|......
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~~~~~~~~w~~aq~~ 230 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIKLNKSVIESSKSSEE 230 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHHHTC-----------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHHHHhcccccHHHHHH
Confidence 56999999999999999999999999999999875 44566666541 1334557655544
No 374
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=22.88 E-value=75 Score=24.12 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=25.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhh
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIF 389 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~ 389 (443)
...|..++|+.+|+|+.-|...+.+...
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998887763
No 375
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.50 E-value=1.2e+02 Score=22.40 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=36.0
Q ss_pred cccCHHHHHHHh-----CCChHHHHHHHHhhhhcCceEEEeccCCCEEEE
Q 013430 362 TNISFEELGTLL-----GIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 406 (443)
Q Consensus 362 s~Itl~~La~lL-----gLs~eeaE~~ls~MI~~grL~akIDQv~giV~F 406 (443)
.-++.++|++.+ ++|..-+-+.|..|...|.+.- +.-.+|...|
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~-~~~~~~~~~y 80 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR-HNFEGGKSVF 80 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE-EECGGGCEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE-EeeCCCceEe
Confidence 468999999999 9999999999999999999873 4444444444
No 376
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=22.47 E-value=96 Score=26.50 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=35.4
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCC---EEEECC
Q 013430 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 408 (443)
Q Consensus 363 ~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~g---iV~F~~ 408 (443)
.++..+||+.+|++..-+=..+.+|...|-+.-.-|..++ .|...+
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~ 134 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTP 134 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECH
Confidence 3999999999999999999999999999999876655444 345543
No 377
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=22.44 E-value=1.4e+02 Score=28.78 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=57.8
Q ss_pred HHHHHHHHHHh-----ccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHhhhhhccc-
Q 013430 144 IREKLADLYES-----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE-DDDAVNAEAFINKASFLVSSS- 216 (443)
Q Consensus 144 l~~~LA~iye~-----~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~-~~D~~~A~~~l~Ka~~~~~~~- 216 (443)
...-|+.+|.. -||.++|.+.++.-.. +++...++.+.--.+.+.. .+|+..++.+++++...-...
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~------LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~ 274 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR------YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESV 274 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH------HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH------hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Confidence 45667888888 4888888888887432 3343446667777777776 499999999999876655443
Q ss_pred cHHHHHHHHHHHHHHHH
Q 013430 217 QQEVLNLQYKVCYARIL 233 (443)
Q Consensus 217 ~d~~lk~~y~~~~ari~ 233 (443)
+++.+-+....-.++.+
T Consensus 275 P~~~lan~~~q~eA~~L 291 (301)
T 3u64_A 275 PHNKLLVILSQKRARWL 291 (301)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHH
Confidence 55666666666666553
No 378
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=22.44 E-value=28 Score=35.74 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHH
Q 013430 144 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 223 (443)
Q Consensus 144 l~~~LA~iye~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~ 223 (443)
+...|+..|.+.|+|.++.+.+.+-.. ..|..+.--|...|.|..|..++++++
T Consensus 96 i~~~Li~~Y~Klg~l~e~e~f~~~pn~-------------~a~~~IGd~~~~~g~yeeA~~~Y~~a~------------- 149 (449)
T 1b89_A 96 VETELIFALAKTNRLAELEEFINGPNN-------------AHIQQVGDRCYDEKMYDAAKLLYNNVS------------- 149 (449)
T ss_dssp -------------CHHHHTTTTTCC-----------------------------CTTTHHHHHHHTT-------------
T ss_pred hHHHHHHHHHHhCCHHHHHHHHcCCcH-------------HHHHHHHHHHHHcCCHHHHHHHHHHhh-------------
Confidence 455688889999999998777654211 145555666666677777777766551
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013430 224 QYKVCYARILDLKRKFLEAALRYYDIS 250 (443)
Q Consensus 224 ~y~~~~ari~~~~r~f~eAa~~y~e~~ 250 (443)
.+.+.|..+..-++|.+|-..|..+.
T Consensus 150 -n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 150 -NFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 23445555556666666666666553
No 379
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.13 E-value=78 Score=24.14 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=25.5
Q ss_pred cccccCHHHHHHHhCCChHHHHHHHHhhh
Q 013430 360 LYTNISFEELGTLLGIAPQKAEKIASRMI 388 (443)
Q Consensus 360 ~Ys~Itl~~La~lLgLs~eeaE~~ls~MI 388 (443)
++...+..+||+.+|+|..-|...+.+..
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 68889999999999999999988877654
No 380
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=22.09 E-value=1.2e+02 Score=23.17 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=15.9
Q ss_pred ChHHHHHHHHhhhhcCceEE
Q 013430 376 APQKAEKIASRMIFEDRMRG 395 (443)
Q Consensus 376 s~eeaE~~ls~MI~~grL~a 395 (443)
|.++++..+.+++.+|+|.+
T Consensus 46 t~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 46 TLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp CHHHHHHHHHHHHHTTSEEC
T ss_pred CHHHHHHHHHHHHhCCeEEE
Confidence 34677788999999999874
No 381
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=22.00 E-value=1.3e+02 Score=22.41 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=26.1
Q ss_pred cccccCHHHHHHHhCCChHHHHHHHHhhhh
Q 013430 360 LYTNISFEELGTLLGIAPQKAEKIASRMIF 389 (443)
Q Consensus 360 ~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~ 389 (443)
++...+.++||+.+|+|..-+...+.+...
T Consensus 33 ~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468889999999999999999998887654
No 382
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=21.96 E-value=1.6e+02 Score=21.54 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=32.5
Q ss_pred cccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEE
Q 013430 360 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 396 (443)
Q Consensus 360 ~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ak 396 (443)
.=.-+|-.++|..||+|.+.+-.-+-++.++|.+.-+
T Consensus 15 ~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKR 51 (68)
T 3i71_A 15 VRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKR 51 (68)
T ss_dssp CTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhh
Confidence 3456788999999999999999999999999998643
No 383
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=21.70 E-value=79 Score=26.06 Aligned_cols=35 Identities=3% Similarity=0.239 Sum_probs=31.5
Q ss_pred cccccCHHHHHHHhCCChHHHHHHHHhhhhcCc-eE
Q 013430 360 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDR-MR 394 (443)
Q Consensus 360 ~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~gr-L~ 394 (443)
+=...++++||+.-|++...++..+++++.+|. ++
T Consensus 29 ~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 29 IDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred HHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 347789999999999999999999999999995 54
No 384
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=21.70 E-value=2.5e+02 Score=22.05 Aligned_cols=49 Identities=4% Similarity=-0.044 Sum_probs=37.8
Q ss_pred hccccc-CHHHHHHHhCCChHHHHHHHHhhhhcCceEEEeccCCCEEEEC
Q 013430 359 KLYTNI-SFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE 407 (443)
Q Consensus 359 k~Ys~I-tl~~La~lLgLs~eeaE~~ls~MI~~grL~akIDQv~giV~F~ 407 (443)
++=..+ +..+||+.||+|..-+-+-+..+..+|.|...=.-..|+....
T Consensus 38 ~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~ 87 (102)
T 2b0l_A 38 DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKV 87 (102)
T ss_dssp BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEE
T ss_pred cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEec
Confidence 344566 9999999999999999999999999999875431135654433
No 385
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=21.64 E-value=32 Score=26.82 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhhhcCceEEEec
Q 013430 377 PQKAEKIASRMIFEDRMRGSID 398 (443)
Q Consensus 377 ~eeaE~~ls~MI~~grL~akID 398 (443)
.+.+|..|.+|...|+|.++||
T Consensus 36 A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 36 VEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCCCcC
Confidence 3578899999999999999885
No 386
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=21.57 E-value=81 Score=28.66 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=30.4
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHhhhhcCceE
Q 013430 363 NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 394 (443)
Q Consensus 363 ~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~ 394 (443)
.+|-++||..+|++.+-+-+.+.+|..+|-|.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 68999999999999999999999999999886
No 387
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=21.35 E-value=3.1e+02 Score=23.13 Aligned_cols=37 Identities=5% Similarity=-0.017 Sum_probs=33.8
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEec
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 398 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akID 398 (443)
...+..+||+.+|++..-+=..+..|...|-+..+-|
T Consensus 70 ~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~ 106 (151)
T 3f6v_A 70 GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKD 106 (151)
T ss_dssp CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 4588999999999999999999999999999988754
No 388
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=21.29 E-value=6.4e+02 Score=25.38 Aligned_cols=137 Identities=12% Similarity=0.028 Sum_probs=81.2
Q ss_pred ccCHHHHHHHHhhhhhhccCCcCChhhHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHH
Q 013430 155 EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILD 234 (443)
Q Consensus 155 ~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~l~Ka~~~~~~~~d~~lk~~y~~~~ari~~ 234 (443)
.+++++|.+++.++... +-.++ ...|-..++.|...+++..|..++++....-.. ++. .-|......+.
T Consensus 83 ~~~l~~A~~lf~~M~~~---G~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd~----~tyn~lI~~~~ 151 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVD---KVVPN---EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-PRL----RSYGPALFGFC 151 (501)
T ss_dssp CHHHHHHHHHHHHHHHT---TCCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CCH----HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh---CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Ccc----ceehHHHHHHH
Confidence 45678899999988643 22122 336788899999999999999999875543222 221 12345556677
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHHHHHHHHHhcCCC--CChHHHHHhhhcCcccccccchHHHHHH
Q 013430 235 LKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAG--PQRSRVLATLYKDERCSKLKIYPILQKV 312 (443)
Q Consensus 235 ~~r~f~eAa~~y~e~~~t~~~~~~~~~i~~~~~~~~Lk~av~~~ILa~~~--~~rs~ll~~l~kd~~~~~l~~~~~L~k~ 312 (443)
..+++.+|...|.+..... ..-+..- |..+-..++..| .+-.+++.++-+.........|..|...
T Consensus 152 ~~g~~~~A~~l~~~M~~~G------~~Pd~~t------y~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 152 RKGDADKAYEVDAHMVESE------VVPEEPE------LAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HTTCHHHHHHHHHHHHHTT------CCCCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcC------CCCCHHH------HHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 8899999999999887631 1122222 222222222223 2223344444333333445567778777
Q ss_pred HH
Q 013430 313 YL 314 (443)
Q Consensus 313 f~ 314 (443)
|-
T Consensus 220 F~ 221 (501)
T 4g26_A 220 FK 221 (501)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 389
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=21.24 E-value=1.2e+02 Score=23.19 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=31.0
Q ss_pred cccCHHHHHHHhCCChH-HHHHHHHhhhhcCceEE
Q 013430 362 TNISFEELGTLLGIAPQ-KAEKIASRMIFEDRMRG 395 (443)
Q Consensus 362 s~Itl~~La~lLgLs~e-eaE~~ls~MI~~grL~a 395 (443)
...+-..||+.||+++. .|-..|..|-.+|.+..
T Consensus 24 g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 24 SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEe
Confidence 45788999999999999 99999999999999973
No 390
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=20.97 E-value=1.5e+02 Score=27.67 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=37.1
Q ss_pred hhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEec-cCCCE
Q 013430 358 SKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID-QVEAV 403 (443)
Q Consensus 358 sk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akID-Qv~gi 403 (443)
.+---.||-+.|+..+|.+++.+...|-.|+.+|.++ || |..|-
T Consensus 163 a~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gllw--vD~q~~ge 207 (234)
T 3cuq_A 163 AEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAW--LDLQAPGE 207 (234)
T ss_dssp HTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCE--EESSSSSS
T ss_pred HHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEE--EeCCCCCc
Confidence 3445679999999999999999999999999999876 66 66553
No 391
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.76 E-value=1.3e+02 Score=23.94 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=24.5
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhhh
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMIF 389 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI~ 389 (443)
...|++++|+.+|+|..-|...+.+.+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6899999999999999999888877653
No 392
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=20.59 E-value=2e+02 Score=28.18 Aligned_cols=56 Identities=5% Similarity=0.087 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHH-hhcccccCHHHHHHHhCCChHHHHHHHHhhhhcCceEEEec
Q 013430 343 TVLDRAMIEHNLLSA-SKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 398 (443)
Q Consensus 343 ~~L~~~viEhNL~~i-sk~Ys~Itl~~La~lLgLs~eeaE~~ls~MI~~grL~akID 398 (443)
+.+++.+.+++..-. -++|...+..++|+++|++...++..+.+|-.+|...++.-
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3ez9_A 22 KAMSQDIEDQRKEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNKKQ 78 (403)
T ss_dssp GGGHHHHHHHHHHHTTTCCCCCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCEEE
T ss_pred HHHHHHHhccccCcCccccCCCcCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCcCC
Confidence 346667777665544 57899999999999999999999999999988888877643
No 393
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=20.25 E-value=70 Score=27.47 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=24.7
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHhh---hhcC
Q 013430 361 YTNISFEELGTLLGIAPQKAEKIASRM---IFED 391 (443)
Q Consensus 361 Ys~Itl~~La~lLgLs~eeaE~~ls~M---I~~g 391 (443)
++-=|+++||+.+|++++.+.+.+.+. +..|
T Consensus 93 ~kadTleeLA~~~gid~~~L~~TV~~yN~~~~~G 126 (160)
T 2lfc_A 93 FVKGSLESAAEQAGIVVDELVQTVKNYQGYVQDG 126 (160)
T ss_dssp EECSSHHHHHHHHTCCHHHHHHHHHHHHHHHTTS
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 455589999999999999998888654 4544
No 394
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=20.15 E-value=88 Score=28.89 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=24.2
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHhhh
Q 013430 362 TNISFEELGTLLGIAPQKAEKIASRMI 388 (443)
Q Consensus 362 s~Itl~~La~lLgLs~eeaE~~ls~MI 388 (443)
.-++.++||..+|+|++++...|.+|=
T Consensus 35 rpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 35 RPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 457788999999999999999999984
Done!