Query 013431
Match_columns 443
No_of_seqs 484 out of 1291
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 10:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 4.9E-44 1.7E-48 343.3 37.1 408 13-442 33-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 8.2E-40 2.8E-44 310.6 19.1 374 14-426 50-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.9E-37 6.5E-42 293.2 30.4 346 15-420 49-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 5.6E-35 1.9E-39 280.3 26.3 402 20-432 47-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1E-35 3.4E-40 275.4 6.9 336 15-410 23-361 (375)
6 2cfq_A Lactose permease; trans 100.0 2.1E-32 7.3E-37 256.3 4.8 364 18-433 34-407 (417)
7 2xut_A Proton/peptide symporte 100.0 1.2E-29 4.2E-34 245.2 18.1 150 16-166 37-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 4.1E-14 1.4E-18 133.6 10.1 180 246-429 30-210 (451)
9 3o7q_A L-fucose-proton symport 99.5 1.6E-13 5.4E-18 129.1 11.9 160 261-424 43-228 (438)
10 2gfp_A EMRD, multidrug resista 99.5 1.5E-13 5.1E-18 126.5 9.9 163 261-430 17-179 (375)
11 4aps_A DI-OR tripeptide H+ sym 99.4 5.3E-13 1.8E-17 127.5 9.8 156 262-424 31-195 (491)
12 2cfq_A Lactose permease; trans 99.4 1.5E-12 5E-17 121.6 11.6 146 25-171 257-404 (417)
13 2xut_A Proton/peptide symporte 99.4 1E-11 3.5E-16 119.6 16.3 156 263-424 31-197 (524)
14 4gc0_A D-xylose-proton symport 99.2 1.1E-10 3.6E-15 111.5 15.7 156 16-171 301-467 (491)
15 2g9p_A Antimicrobial peptide l 69.4 2.9 9.9E-05 19.5 1.6 14 46-59 2-15 (26)
16 3mkt_A Multi antimicrobial ext 39.0 2.2E+02 0.0074 25.6 18.7 30 102-131 146-175 (460)
17 4dve_A Biotin transporter BIOY 27.5 1.4E+02 0.0046 23.7 5.9 24 34-57 100-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=4.9e-44 Score=343.31 Aligned_cols=408 Identities=32% Similarity=0.574 Sum_probs=316.3
Q ss_pred CCcchhhhhhc--------chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh---------
Q 013431 13 CSRPSLVAQLG--------STFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA--------- 75 (443)
Q Consensus 13 ~~~p~i~~~~~--------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--------- 75 (443)
...|.+.++++ .+.++.|++.+++.+|..+|++++|+++||+|||+++.++.+++.+++++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~ 112 (491)
T 4gc0_A 33 GTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSI 112 (491)
T ss_dssp GTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCS
T ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45677777773 3456789999999999999999999999999999999999999999999998
Q ss_pred ---------ccchHHHHHHHHHHHhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCC----
Q 013431 76 ---------YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---- 142 (443)
Q Consensus 76 ---------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~---- 142 (443)
+++|+++++++|+++|++.|...+....++.|+.|+++|++..++.+.+..+|.++++.++......
T Consensus 113 ~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 192 (491)
T 4gc0_A 113 NPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS 192 (491)
T ss_dssp SSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred cchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc
Confidence 4789999999999999999999999999999999999999999999999999999999887665432
Q ss_pred ---ccchHHHHhhhhHHHHHHHHHHhcCCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHh
Q 013431 143 ---VGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVS 219 (443)
Q Consensus 143 ---~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (443)
..+||..+.+..++.++..+..+++||||+|+.. +++.|++.+.+++.+.++..+ ++..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~---------~~~~~~a~~~l~~~~~~~~~~----~~~~~~--- 256 (491)
T 4gc0_A 193 WLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMS---------RGKQEQAEGILRKIMGNTLAT----QAVQEI--- 256 (491)
T ss_dssp TTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHH---------TTCHHHHHHHHHHHHHHHHHH----HHHHHH---
T ss_pred cccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHH---------cCchhHHHHhHHHhcCCchhH----HHHHHH---
Confidence 1268999999999999888888999999999987 344555555555443321100 000000
Q ss_pred ccccccccccccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHH
Q 013431 220 LKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWI 299 (443)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (443)
++..+++++.......++ .++..+......+....+...+.+|.+.+.+..+... ..........++..+++.++
T Consensus 257 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (491)
T 4gc0_A 257 -KHSLDHGRKTGGRLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST-DIALLQTIIVGVINLTFTVL 331 (491)
T ss_dssp -HHHHHHHHHHTTHHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHhhhhhhhHHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc-cchhhHHHHHHHHHHHHHHH
Confidence 000011111111112222 2344555556667777778888889999988888766 56667777888999999999
Q ss_pred HHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHH
Q 013431 300 AVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL 379 (443)
Q Consensus 300 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 379 (443)
.+++.||+|||+.+..+.....++.+.+...... .......+....+...++..+..++.+.+.+|++|++.|+++.|+
T Consensus 332 ~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~ 410 (491)
T 4gc0_A 332 AIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAI 410 (491)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHH
T ss_pred HHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHH
Confidence 9999999999999988888877777666544332 233344455555566667777788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHH------hhccchhhhHHHHHHHHHHHHhhhccccCCCCCHHHHHhhhh
Q 013431 380 AVLTNFGSNAIVTFAFSPLKE------LLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKIL 442 (443)
Q Consensus 380 ~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (443)
.+..+++++.+++.+.+.+.+ ..+....+++++++++++.++.+++.||+|++++||+|+..|
T Consensus 411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 999999999999888766543 345667788889999999988889999999999999987554
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=8.2e-40 Score=310.55 Aligned_cols=374 Identities=14% Similarity=0.089 Sum_probs=280.8
Q ss_pred CcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHH
Q 013431 14 SRPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY----APGLGVLLVGRLL 89 (443)
Q Consensus 14 ~~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~l~~~r~l 89 (443)
..|.+.+++ .+..+.|++.+.+.++..++++++|+++||+|||+++.++.++.+++.+++++ ++|++.++++|++
T Consensus 50 ~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 128 (451)
T 1pw4_A 50 AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 128 (451)
T ss_dssp HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHH
T ss_pred HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence 367888999 99999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccc-hHHHHhhhhHHHHHHHH-HHhcC
Q 013431 90 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG-WRYMYGLSAPLALLMGI-GMWSL 167 (443)
Q Consensus 90 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~-wr~~f~~~~~~~~~~~~-~~~~~ 167 (443)
.|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++++.+.. + ||+.|++.+++.++..+ ..+++
T Consensus 129 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 129 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999877766 7 99999999988877654 44668
Q ss_pred CCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHH
Q 013431 168 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 247 (443)
Q Consensus 168 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (443)
||+|+.... .+.+ +...+.+.+. +.+++++...++...++.+++|.++...+
T Consensus 208 ~~~~~~~~~----~~~~---------------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (451)
T 1pw4_A 208 RDTPQSCGL----PPIE---------------------EYKNDYPDDY---NEKAEQELTAKQIFMQYVLPNKLLWYIAI 259 (451)
T ss_dssp CCSSTTTCC----CSCT---------------------TTCCC----------------CCTHHHHHHTSSCHHHHHHHH
T ss_pred cCCHhhcCC----CChh---------------------hhcccccccc---hhhhhcccccccchHHHHHcCHHHHHHHH
Confidence 887742100 0000 0000000000 00000001111112466778877776665
Q ss_pred HHHHHHHHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc--CCceEEehhhHHHH-HH
Q 013431 248 GGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL--GRRPLLIGGVCGIA-LS 323 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~ 323 (443)
...+..+.. .....+.|.++++ .+.+. .+.+.......++.+++.++.+++.||+ +||+.+..+..+.. ++
T Consensus 260 ~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 260 ANVFVYLLR----YGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHH----HHHHHHHHHHBTTBSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 554444433 3467788888888 56655 7888999999999999999999999999 99887766655544 33
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHH-HHHHHHHhhHHHHHhh
Q 013431 324 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG-SNAIVTFAFSPLKELL 402 (443)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~ 402 (443)
.+++... .+.+........+..+.......+....+..|.+|++.|+++.|+.+...++ +..++|.+.|.+.+..
T Consensus 335 ~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 410 (451)
T 1pw4_A 335 TIVYWMN----PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410 (451)
T ss_dssp HHHTTSC----CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHh----cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333221 1112222333333333333334444457889999999999999999999999 9999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHhhhcc
Q 013431 403 GAENIFLLFAAIAFLAVLFIVRTV 426 (443)
Q Consensus 403 g~~~~~~~~~~~~~~~~~~~~~~~ 426 (443)
|+...|++.+++.+++.++.+...
T Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 411 GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 998899888888777776555543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.9e-37 Score=293.15 Aligned_cols=346 Identities=16% Similarity=0.112 Sum_probs=271.1
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---hccchHHHHHHHHHHHh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYAPGLGVLLVGRLLYG 91 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G 91 (443)
.|.+.+++|.++.+.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.+++ ++++|++.++++|++.|
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 128 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA 128 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred hhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhccc-CCccc------------------------h
Q 013431 92 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-NAVGG------------------------W 146 (443)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~~~~~------------------------w 146 (443)
++.+...+...+++.|++|+++|++++++.+.+.++|..++|.+++.+. +.... |
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 208 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSV 208 (438)
T ss_dssp HHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999988 55423 9
Q ss_pred HHHHhhhhHHHHHHHHHHhc--CCCChHHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccc
Q 013431 147 RYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSY 224 (443)
Q Consensus 147 r~~f~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (443)
|+.|++.+++.++..+..++ .||+++. + +++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----------------------------~------------------~~~~ 242 (438)
T 3o7q_A 209 QTPYMIIVAIVLLVALLIMLTKFPALQSD----------------------------N------------------HSDA 242 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCTTT----------------------------C------------------CCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccc----------------------------c------------------cccc
Confidence 99998877777666554433 3444310 0 0000
Q ss_pred cccccccchhhhccCCchhHHHHHHHHHHHHHHhCchhhHhhHHHH-HHhc-CCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 013431 225 TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQSA-GFSAAADATRVSVVIGVFKLVMTWIAVA 302 (443)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 302 (443)
++++.+.++++++++|.++...+...+..... .....+.|.+ +++. +.+. .+.+.......++.+++.++.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 243 KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPGMTA-GFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSTTCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCCcch-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122345677888888887776655544433 3466788888 8776 5554 88899999999999999999999
Q ss_pred hhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHH
Q 013431 303 KVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL 382 (443)
Q Consensus 303 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 382 (443)
+.||++||+.+..+..+..++.+++.. ...........+.. .......+..+++..|.+|++ ++++.++..
T Consensus 318 l~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 388 (438)
T 3o7q_A 318 LISRFAPHKVLAAYALIAMALCLISAF------AGGHVGLIALTLCS-AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV- 388 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHH-HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHH------cCCcHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence 999999999888877776666555443 12222233333333 333334456667778888866 888888877
Q ss_pred HHHHHHHHHHHhhHHHHHhhc-cchhhhHHHHHHHHHHH
Q 013431 383 TNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVL 420 (443)
Q Consensus 383 ~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 420 (443)
...+++.++|.+.|.+.|..| +...+.+.+++.++..+
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 677999999999999999999 88888776555444333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=5.6e-35 Score=280.28 Aligned_cols=402 Identities=13% Similarity=0.038 Sum_probs=257.8
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhc
Q 013431 20 AQLGSTFRLFSLALCGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAM 98 (443)
Q Consensus 20 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 98 (443)
+|+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3499999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcCcccc--hhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcC-CCChHHHH
Q 013431 99 HGAPLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-PPSPRWLL 175 (443)
Q Consensus 99 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~es~~~~~ 175 (443)
+...+++.|++|+++ |++++++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..++. ++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~--- 202 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTLD--- 202 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCccccc---
Confidence 999999999999988 778888899999999999999999988877 99999999877776655544322 11110
Q ss_pred HhhhcCCCchhhHHHHHHHHHhh--------------hhcCCCCCCcchhhHHHHHHhcc----ccccccccccchhhhc
Q 013431 176 LRAVQGKGSLQEYKEQAISALGK--------------LRRRPPGDKLSERQIEDTLVSLK----SSYTDEKSEGSFLEVF 237 (443)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 237 (443)
+..++.+.+.+.++..+..+. ....+..+..+............ .....+++.....+..
T Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (491)
T 4aps_A 203 --PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHL 280 (491)
T ss_dssp --SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred --ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 000011111111122221111 00011111111111000000000 0000000000001111
Q ss_pred cCCchhHHHHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEe---
Q 013431 238 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI--- 314 (443)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~--- 314 (443)
+........+...+.+... .....+.|.+.++....+....+.......+..+++.++.+++.||++||+...
T Consensus 281 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~ 356 (491)
T 4aps_A 281 RVVSYIPLFIAAVLFWAIE----EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTK 356 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHH----GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHH
Confidence 1112222332222222222 234556666776643333256677778888899999999999999999998766
Q ss_pred --hhhHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHH
Q 013431 315 --GGVCGIALSLLLLSAYYKIL---GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNA 389 (443)
Q Consensus 315 --~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 389 (443)
.+..+.+++...+....... .+.+........+..+.......+..+.+..|.+|++.|+++.|+.+....+|..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 357 FAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544332110 1123333333444444444444556678999999999999999999999999999
Q ss_pred HHHHhhHHHHHhhccchhhhHHHHHHHHHHHHhhhccccCCCC
Q 013431 390 IVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL 432 (443)
Q Consensus 390 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (443)
++|.+.+.+.+. ++...+...+++++++.++.+...++.+++
T Consensus 437 i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 437 LNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877654 667778888887777777666665554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1e-35 Score=275.40 Aligned_cols=336 Identities=14% Similarity=0.094 Sum_probs=256.1
Q ss_pred cchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhh
Q 013431 15 RPSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 94 (443)
Q Consensus 15 ~p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 94 (443)
.|.+.+++|.++++.+++.+.+.++..++++++|+++||+|||+++..+..+.+++.+++++++|++.+++.|++.|++.
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHH-HHhcCCCChHH
Q 013431 95 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPSPRW 173 (443)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~es~~~ 173 (443)
+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++++.+.. +||+.|++.++..++..+ ..+.+||+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 9999999999999999999999999999999999999999999988877 999999998888877665 44567776531
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHHHH
Q 013431 174 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 253 (443)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (443)
+.++++.+.++++.+|+|+++...+...+..
T Consensus 182 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (375)
T 2gfp_A 182 -------------------------------------------------DAPRTRLLTSYKTLFGNSGFNCYLLMLIGGL 212 (375)
T ss_dssp -------------------------------------------------TCCCCCTTTCSTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------CcccccHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 0000112334667777777776665554444
Q ss_pred HHHHhCchhhHhhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHH-HHHHHHHHHHHH
Q 013431 254 FQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG-IALSLLLLSAYY 331 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~ 331 (443)
... .....+.|.++++ .+.++ .+.+.......++.+++.++.+++.||.+++ ...+... ...+...+....
T Consensus 213 ~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~ 285 (375)
T 2gfp_A 213 AGI----AAFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDW 285 (375)
T ss_dssp HHH----HHHHHHCSCSSHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHH
T ss_pred HHH----HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 433 2355666666665 45544 7788889999999999999999999998772 2222222 111111111111
Q ss_pred HHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhH
Q 013431 332 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 410 (443)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 410 (443)
. ..++.+.......+...+. ....+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+..++...+..
T Consensus 286 ~-~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 286 F-GVMNVWTLLVPAALFFFGA-GMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp H-HHHHHHHHHHHHHHHHHHH-HHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred h-ccccHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 0 0112222223333333333 3344556688889988 8999999999999999999999999999887776555554
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=2.1e-32 Score=256.26 Aligned_cols=364 Identities=13% Similarity=0.061 Sum_probs=237.1
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH---HHhccchH-HHHHHHHHHHhhh
Q 013431 18 LVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGAL---TTAYAPGL-GVLLVGRLLYGLG 93 (443)
Q Consensus 18 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~---~~~~~~~~-~~l~~~r~l~G~~ 93 (443)
+++++|.|+.+.|++.+.+.+++.++++++|+++||+||||++.++..+.++... .+.+++.. ..+...+.+.|++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677999999999999999999999999999999999999999998887765322 12233222 1234566777766
Q ss_pred hhhhchhhhhHhhhcCcc--cchhhHHHHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHhcCCCCh
Q 013431 94 IGLAMHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 171 (443)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 171 (443)
.+...+.....+.++.++ ++|+...+.......+|..++|.+++++.+ . +||+.|++.++..++..+..++.+|++
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-I-NNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-H-CSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-h-chhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 665555555555555543 456777788888889999999999998775 3 799999988877655555555554433
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHhccccccccccccchhhhccCCchhHHHHHHHH
Q 013431 172 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 251 (443)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (443)
+. + .+ ++++ + +..+++....+.++++++|.++...+....
T Consensus 192 ~~---~---~~------------------~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (417)
T 2cfq_A 192 PS---S---AT------------------VANA-V---------------GANHSAFSLKLALELFRQPKLWFLSLYVIG 231 (417)
T ss_dssp SC---S---SC------------------SSSS-S---------------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cc---c---cc------------------cccc-c---------------ccccccccHHHHHHHhcCCchhhHHHHHHH
Confidence 10 0 00 0000 0 000001111234567777777655543322
Q ss_pred HHHHHHhCchhhHhhHHHHHHhcCCCC---chhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHH
Q 013431 252 VLFQQITGQPSVLYYAGPILQSAGFSA---AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 328 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 328 (443)
..... ..+..+.|.++++..... ....+.......++.+++.++.+++.||++||+.+..+..+.++....+.
T Consensus 232 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 232 VSCTY----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHH----HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH----HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 22221 123344666655532211 13456777777788899999999999999999987766666555544332
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHH-HHHHHHHHHHHHHhhHHHHHhhccchh
Q 013431 329 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKELLGAENI 407 (443)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~ 407 (443)
. .++.+.......+.... .....+..+.+..|.+|++.|+++.+.. +....+|+.++|.+.|.+.+..|+...
T Consensus 308 ~-----~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~ 381 (417)
T 2cfq_A 308 F-----ATSALEVVILKTLHMFE-VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp T-----CCSHHHHHHHTTHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHH
T ss_pred H-----hccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHH
Confidence 2 12222222222222222 2222223347889999999999999994 778889999999999999998888888
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCCC
Q 013431 408 FLLFAAIAFLAVLFIVRTVPETKGLS 433 (443)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (443)
|.+.+++.+++.++.+...+|+++.+
T Consensus 382 f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 382 YLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 88888888877776666666655544
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.2e-29 Score=245.16 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=136.8
Q ss_pred chhhhhhc------chhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHH
Q 013431 16 PSLVAQLG------STFRLFSLALCGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGR 87 (443)
Q Consensus 16 p~i~~~~~------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r 87 (443)
+.+.+++| .+..+.+++.+.+.++..++++++|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34667788 9999999999999999999999999999999 999999999999999999999999 999999999
Q ss_pred HHHhhhhhhhchhhhhHhhhcCcccchhhHHHH---HHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHH
Q 013431 88 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL---KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 164 (443)
Q Consensus 88 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 164 (443)
++.|++.+...+...+++.|++|+++|+++.+. ...+.++|..++|.+++.+.+.. +||+.|++.++..++..+..
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876666 99999999999999999988776 89999999888877665554
Q ss_pred hc
Q 013431 165 WS 166 (443)
Q Consensus 165 ~~ 166 (443)
++
T Consensus 196 ~~ 197 (524)
T 2xut_A 196 WL 197 (524)
T ss_dssp HS
T ss_pred HH
Confidence 43
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51 E-value=4.1e-14 Score=133.65 Aligned_cols=180 Identities=16% Similarity=0.050 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhCchhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHH
Q 013431 246 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 325 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 325 (443)
.....+..+........+..+.|.+.++. .+. .+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 107 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 107 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-hHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 33333344443333344666778777777 555 7899999999999999999999999999999999988888888777
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhc-c
Q 013431 326 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-A 404 (443)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~ 404 (443)
+..+.... .++.+..+... ++.+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..| |
T Consensus 108 ~~~~~~~~-~~~~~~l~~~~-~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w 185 (451)
T 1pw4_A 108 FMGFVPWA-TSSIAVMFVLL-FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW 185 (451)
T ss_dssp HHHHCHHH-HSSSSHHHHHH-HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCS
T ss_pred HHHhhhhc-cccHHHHHHHH-HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 76542110 12333333333 333333334445556899999999999999999999999999999999999999998 9
Q ss_pred chhhhHHHHHHHHHHHHhhhccccC
Q 013431 405 ENIFLLFAAIAFLAVLFIVRTVPET 429 (443)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (443)
+..|++.+++.++..++.++..+|+
T Consensus 186 ~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 186 HAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999998888777766665555554
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.48 E-value=1.6e-13 Score=129.09 Aligned_cols=160 Identities=14% Similarity=0.027 Sum_probs=121.0
Q ss_pred hhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhH
Q 013431 261 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 340 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (443)
.......|.+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++...... ..+..
T Consensus 43 ~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~~~ 118 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---IMNYT 118 (438)
T ss_dssp HHHHHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH---TTCHH
T ss_pred HhHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc---cccHH
Confidence 456667888888888887 88999999999999999999999999999999999988888887777632211 22333
Q ss_pred HHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHH-Hhhc----------------
Q 013431 341 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-ELLG---------------- 403 (443)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-~~~g---------------- 403 (443)
.+....++.+.......+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+. +..+
T Consensus 119 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 198 (438)
T 3o7q_A 119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLS 198 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhh
Confidence 33333334444444444455689999999999999999999999999999999999998 5444
Q ss_pred ---------cchhhhHHHHHHHHHHHHhhh
Q 013431 404 ---------AENIFLLFAAIAFLAVLFIVR 424 (443)
Q Consensus 404 ---------~~~~~~~~~~~~~~~~~~~~~ 424 (443)
|+..|.+.+++..+..++..+
T Consensus 199 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 199 AYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 677777666665555544433
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.46 E-value=1.5e-13 Score=126.45 Aligned_cols=163 Identities=14% Similarity=0.108 Sum_probs=128.0
Q ss_pred hhhHhhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEehhhHHHHHHHHHHHHHHHHhccchhH
Q 013431 261 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 340 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (443)
.......|.+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+..++....... + +..
T Consensus 17 ~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~ 89 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-----S-SLT 89 (375)
T ss_dssp HHHHHHHHHHHTTSSSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-----H-HHH
T ss_pred HHHhhhhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----c-cHH
Confidence 345566777778888776 788999999999999999999999999999999999888888877776653 1 222
Q ss_pred HHHHHHHHHHHHhhccccceeeeeecccCccccchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHHHHHHHHHH
Q 013431 341 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 420 (443)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 420 (443)
.+....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..+.+.++..++..+
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33333333444444445566688899999999999999999999999999999999999988999999888887777766
Q ss_pred HhhhccccCC
Q 013431 421 FIVRTVPETK 430 (443)
Q Consensus 421 ~~~~~~~~~~ 430 (443)
......||++
T Consensus 170 ~~~~~~~~~~ 179 (375)
T 2gfp_A 170 SMARWMPETR 179 (375)
T ss_dssp CCCCSSCCCS
T ss_pred HHHHHCcccC
Confidence 5555566654
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.40 E-value=5.3e-13 Score=127.48 Aligned_cols=156 Identities=16% Similarity=0.086 Sum_probs=118.3
Q ss_pred hhHhhHHHHHHh------cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc-cCCceEEehhhHHHHHHHHHHHHHHHHh
Q 013431 262 SVLYYAGPILQS------AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKIL 334 (443)
Q Consensus 262 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (443)
....+.+.++++ .+.+. .+.++..+...++..++.++.|+++|| +|||+.+..+..+..++.++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----- 104 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHITR-ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHhccchhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----
Confidence 354556666655 56655 889999999999999999999999999 89999999888887777766654
Q ss_pred ccchhHHHHHHHHHHHHHhhccccceeeeeecccCccc--cchhHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhhHHH
Q 013431 335 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFA 412 (443)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 412 (443)
.++.+.... ..++.+.......+...+++.|.+|+++ |+.+.++.+....+|..++|.+.+.+.+..||+..|.+.+
T Consensus 105 ~~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 105 PFGASALFG-SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp CCSTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhhHHHHHH-HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 123333333 3333333334444556688999999988 7778888889999999999999999999999999998887
Q ss_pred HHHHHHHHHhhh
Q 013431 413 AIAFLAVLFIVR 424 (443)
Q Consensus 413 ~~~~~~~~~~~~ 424 (443)
+..+++.+....
T Consensus 184 ~~~~~~~~~~~~ 195 (491)
T 4aps_A 184 IGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766666554443
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.39 E-value=1.5e-12 Score=121.56 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=123.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhchhhhhH
Q 013431 25 TFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLY 104 (443)
Q Consensus 25 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 104 (443)
+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888889999999999999999999999998888888888888888888888888888877777778889
Q ss_pred hhhcCcccchhhHHHH-HHHHHHHHHHHHHHhhhcccCCccchHHHHhhhhHHHHHHHHHHh-cCCCCh
Q 013431 105 IAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPSP 171 (443)
Q Consensus 105 i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~es~ 171 (443)
+.|.+|++.|+++.++ .+....+|..++|.+++++.+.. +++..|.+.+++.++..+..+ ..||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 48888999999999999988766 889999988888877766544 455543
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.37 E-value=1e-11 Score=119.55 Aligned_cols=156 Identities=12% Similarity=0.078 Sum_probs=116.6
Q ss_pred hHhhHHHHHHh-cC------CCCchhHHHHHHHHHHHHHHHHHHHHHhhccc-CCceEEehhhHHHHHHHHHHHHHHHHh
Q 013431 263 VLYYAGPILQS-AG------FSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKIL 334 (443)
Q Consensus 263 ~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (443)
...+.+.++++ .+ .+. .+.++......++..++.++.|+++||+ |||+.+..+..+..++.++....
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---- 105 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRG-AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---- 105 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTT-TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHhccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----
Confidence 45566666554 55 555 7889999999999999999999999999 99999888887777776665541
Q ss_pred ccchhHHHHHHHHHHHHHhhccccceeeeeecccCccccchhHHH---HHHHHHHHHHHHHHhhHHHHHhhccchhhhHH
Q 013431 335 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL---AVLTNFGSNAIVTFAFSPLKELLGAENIFLLF 411 (443)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 411 (443)
+.+...+....++.+.......+...+++.|.+|+++|+++.+. .+....+|..++|.+.+.+.+..||+..|.+.
T Consensus 106 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp -SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 21223333333334444444555666889999999999877666 88889999999999999999989999999888
Q ss_pred HHHHHHHHHHhhh
Q 013431 412 AAIAFLAVLFIVR 424 (443)
Q Consensus 412 ~~~~~~~~~~~~~ 424 (443)
+++.++..+....
T Consensus 185 ~~~~~~~~~~~~~ 197 (524)
T 2xut_A 185 GVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH
Confidence 7776665554443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.25 E-value=1.1e-10 Score=111.49 Aligned_cols=156 Identities=19% Similarity=0.122 Sum_probs=114.1
Q ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHH
Q 013431 16 PSLVAQLGSTFRLFSLALCGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-----PGLGVLLVGRLLY 90 (443)
Q Consensus 16 p~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~ 90 (443)
|.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+...-+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 55667778888788888888889999999999999999999999999888887776665432 2222222222222
Q ss_pred hhhhhhhchhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc-----cchHHHHhhhhHHHHHHHH-HH
Q 013431 91 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-----GGWRYMYGLSAPLALLMGI-GM 164 (443)
Q Consensus 91 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-----~~wr~~f~~~~~~~~~~~~-~~ 164 (443)
+.......+....+.+|.+|.+.|++++++......+|..+++.+.+.+.+.. .++...|++.++++++..+ .+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 22222345677889999999999999999999999999999887766654321 1455677887887777765 45
Q ss_pred hcCCCCh
Q 013431 165 WSLPPSP 171 (443)
Q Consensus 165 ~~~~es~ 171 (443)
+++|||.
T Consensus 461 ~~~PETk 467 (491)
T 4gc0_A 461 KFVPETK 467 (491)
T ss_dssp HHCCCCT
T ss_pred heecCCC
Confidence 6789985
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=69.44 E-value=2.9 Score=19.47 Aligned_cols=14 Identities=29% Similarity=0.301 Sum_probs=11.4
Q ss_pred HHHHHHhhhchhHH
Q 013431 46 LVYSIADFLGRKRE 59 (443)
Q Consensus 46 ~~g~l~dr~Grr~~ 59 (443)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=38.96 E-value=2.2e+02 Score=25.63 Aligned_cols=30 Identities=3% Similarity=-0.243 Sum_probs=14.7
Q ss_pred hhHhhhcCcccchhhHHHHHHHHHHHHHHH
Q 013431 102 PLYIAETCPSQIRGTLISLKELFIVLGILL 131 (443)
Q Consensus 102 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 131 (443)
..........++|.+...+......+-.++
T Consensus 146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 175 (460)
T 3mkt_A 146 FQALRSFTDGMSLTKPAMVIGFIGLLLNIP 175 (460)
T ss_dssp HHHHTTTTCTTSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 334444555555555555555544444433
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=27.47 E-value=1.4e+02 Score=23.74 Aligned_cols=24 Identities=17% Similarity=0.015 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchh
Q 013431 34 CGSLYGALLGSILVYSIADFLGRK 57 (443)
Q Consensus 34 s~~~~~~~i~~~~~g~l~dr~Grr 57 (443)
.-|.+|+.++..+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 456778888899999999997644
Done!