BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013432
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HKM|A Chain A, Crystal Structure Of An Anthranilate
Phosphoribosyltransferase (Target Id Nysgrc-016600) From
Xanthomonas Campestris
pdb|4HKM|B Chain B, Crystal Structure Of An Anthranilate
Phosphoribosyltransferase (Target Id Nysgrc-016600) From
Xanthomonas Campestris
Length = 346
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 122/341 (35%), Gaps = 39/341 (11%)
Query: 105 VSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHY-GEPYDGNTRFF 163
VS++ +SA L G R+ +ET E+ + V D + G DG+ F
Sbjct: 36 VSDAXVSAILTGLRVKKETIGEIAGAATVXREFSRRVEVTDRRHXVDIVGTGGDGSHTFN 95
Query: 164 RSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEI 223
ST + HG + K G + L+ +GA L Q L I
Sbjct: 96 ISTCAXFVAAAGG-AKVAKHGNRSVSSKSGSAD--ALEALGAVIELQPEQVAASLAQTGI 152
Query: 224 GFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEP 283
GF Y + P+ + +R R + G I+ G +H
Sbjct: 153 GFXYAPVHH--PAXKVVAPVRREXGVR---TIFNILGPLTNPAGSPNILXGVFHPDLVGI 207
Query: 284 LLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGV 343
+++ G LVV G +G + S+ A T G+
Sbjct: 208 QARVLQELGAERALVVWGRDGXDEL-----SLGAG------------------TLVGELR 244
Query: 344 SRQSFNLEVNASNYGFEPT---NTPRADRSVSKNIELGLAALRGEKGPTYDRIVLNAGMV 400
Q EV+ ++G + N AD + S+ L + L GP D + LNAG
Sbjct: 245 DGQVHEYEVHPEDFGIAXSASRNLKVADAAESRAXLLQV--LDNVPGPALDIVALNAGAA 302
Query: 401 DHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441
++ G A+ ++ + RAR+ + G A L Y+ + +
Sbjct: 303 LYVAGV--ADSIADGIVRARQVLADGSARACLDAYVAFTQQ 341
>pdb|1KGZ|A Chain A, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora
(current Name, Pectobacterium Carotovorum)
pdb|1KGZ|B Chain B, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora
(current Name, Pectobacterium Carotovorum)
pdb|1KHD|A Chain A, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|B Chain B, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|C Chain C, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|D Chain D, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
Length = 345
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 126/342 (36%), Gaps = 60/342 (17%)
Query: 105 VSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFR 164
+ +S L+A LI +M E E+ A + P P D G DG
Sbjct: 43 LEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPDYDFADIVGTGGDGTNSINI 102
Query: 165 ST--LFVAAVRSCYGESCLLHGAEWM-PPKGGVTEEQMLKFMGASTNLSVLQAKELLEDE 221
ST FVAA SC G HG + P G + +L+ G ++S +++ L+D
Sbjct: 103 STASAFVAA--SC-GAKVAKHGNRSVCQPLAGSCD--LLQAFGIRLDMSAEDSRQALDDL 157
Query: 222 EIGFAY-----VSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFY 276
+ F + R A P +R+ +K R + + + G Y
Sbjct: 158 NVCFLFAPQYHTGFRHAMP-------VRQQLKTR---TIFNVLGPLINPARPPKALIGVY 207
Query: 277 HEGYEEPLLMLMKRRGVHSGLVVKG---EEGALSMTTRLRSVNASKGLPVNYCSGFRSLN 333
P+ +K G + VV G +E A+ T++ +N +
Sbjct: 208 SPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNNGE-------------- 253
Query: 334 VESTFEGDGVSRQSFNLE---VNASNYGFEPTNTPRADRSVSKNIELGLAALRGEKGPTY 390
E +S Q F L+ +NA G TP +R + + L+G+ +
Sbjct: 254 ----IESYQLSPQDFGLQSYSLNALQGG-----TPEENRDILARL------LQGKGDAAH 298
Query: 391 DRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRL 432
R V A V LL G +++ A E I SG A +R+
Sbjct: 299 ARQV--AANVALLLKLFGQDNLRHNAQLALETIRSGTAFERV 338
>pdb|1ZVW|A Chain A, The Crystal Structure Of Trpd (Rv2192c) From Mycobacterium
Tuberculosis In Complex With Prpp And Magnesium
pdb|1ZVW|B Chain B, The Crystal Structure Of Trpd (Rv2192c) From Mycobacterium
Tuberculosis In Complex With Prpp And Magnesium
Length = 378
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 382 LRGEKGPTYDRIVLNA--GMVDHLLGCDGAEDVSV---AMDRAREAIDSGKALKRLLNYI 436
L G +GP D +VLNA +V H AE + + RA AID+G A + L ++
Sbjct: 305 LGGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWV 364
Query: 437 KISHKL 442
+ ++
Sbjct: 365 RFGRQI 370
>pdb|2BPQ|A Chain A, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Apo Structure)
pdb|2BPQ|B Chain B, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Apo Structure)
Length = 373
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 382 LRGEKGPTYDRIVLNA--GMVDHLLGCDGAEDVSV---AMDRAREAIDSGKALKRLLNYI 436
L G +GP D +VLNA +V H AE + + RA AID+G A + L ++
Sbjct: 305 LGGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWV 364
Query: 437 KISHKL 442
+ ++
Sbjct: 365 RFGRQI 370
>pdb|3QR9|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (apo Structure)
pdb|3QR9|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (apo Structure)
pdb|3QQS|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QQS|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QQS|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QQS|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QS8|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QS8|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QS8|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QS8|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QSA|A Chain A, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Complex With Inhibitor
Tamu-A7)
pdb|3QSA|B Chain B, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Complex With Inhibitor
Tamu-A7)
pdb|3R6C|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs179)
pdb|3R6C|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs179)
pdb|3R88|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs145)
pdb|3R88|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs145)
pdb|3TWP|A Chain A, Crystal Structure Of M. Tuberculosis Trpd In Complex With
An Inhibitor
pdb|3TWP|B Chain B, Crystal Structure Of M. Tuberculosis Trpd In Complex With
An Inhibitor
pdb|3TWP|C Chain C, Crystal Structure Of M. Tuberculosis Trpd In Complex With
An Inhibitor
pdb|3TWP|D Chain D, Crystal Structure Of M. Tuberculosis Trpd In Complex With
An Inhibitor
pdb|3UU1|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
pdb|3UU1|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
pdb|3UU1|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
pdb|3UU1|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
Length = 377
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 382 LRGEKGPTYDRIVLNA--GMVDHLLGCDGAEDVSV---AMDRAREAIDSGKALKRLLNYI 436
L G +GP D +VLNA +V H AE + + RA AID+G A + L ++
Sbjct: 304 LGGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWV 363
Query: 437 KISHKL 442
+ ++
Sbjct: 364 RFGRQI 369
>pdb|3HL9|A Chain A, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded
pdb|3HL9|B Chain B, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded
pdb|3HL9|C Chain C, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded
pdb|3HL9|D Chain D, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded
pdb|3HLB|A Chain A, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded, Selenomethionyl Derivative
pdb|3HLB|B Chain B, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded, Selenomethionyl Derivative
pdb|3HLB|C Chain C, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded, Selenomethionyl Derivative
pdb|3HLB|D Chain D, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded, Selenomethionyl Derivative
Length = 432
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 18/127 (14%)
Query: 72 LREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFL--IGQRMNRETDRELKA 129
LRE +A GHL E G+ + P V++ PG +E + A L G+ + R T +L+
Sbjct: 172 LREYMAQGHLQSAEKFGIQSRLAPPAVND--PG-AEWIYGANLDWAGKLVERATGLDLEQ 228
Query: 130 Y-----C-------LAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYG 177
Y C + F + P +A TH DG R+ S F A C+G
Sbjct: 229 YLQENICAPLGITDMTFKLQQRPDMLARRADQTHRNSA-DGRLRYDDSVYFRADGEECFG 287
Query: 178 ESCLLHG 184
+ G
Sbjct: 288 GQGVFSG 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,026,136
Number of Sequences: 62578
Number of extensions: 530156
Number of successful extensions: 1034
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 8
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)