Query 013432
Match_columns 443
No_of_seqs 265 out of 1513
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:47:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09522 bifunctional glutamin 100.0 5.5E-90 1.2E-94 731.7 34.9 373 22-437 129-529 (531)
2 PRK14607 bifunctional glutamin 100.0 7.6E-89 1.6E-93 726.4 37.6 380 22-442 125-531 (534)
3 COG0547 TrpD Anthranilate phos 100.0 6.6E-87 1.4E-91 666.9 36.5 335 66-441 2-338 (338)
4 PLN02641 anthranilate phosphor 100.0 1.5E-83 3.3E-88 648.8 34.8 333 67-443 3-337 (343)
5 PRK07394 hypothetical protein; 100.0 2E-82 4.3E-87 641.8 36.3 329 67-436 4-341 (342)
6 PRK00188 trpD anthranilate pho 100.0 3.3E-78 7.2E-83 612.1 35.6 335 66-442 1-338 (339)
7 TIGR01245 trpD anthranilate ph 100.0 2E-77 4.4E-82 604.1 32.6 326 72-438 1-330 (330)
8 PRK08136 glycosyl transferase 100.0 4.9E-75 1.1E-79 580.8 30.9 306 66-417 1-316 (317)
9 PRK09071 hypothetical protein; 100.0 5.4E-72 1.2E-76 561.0 32.2 308 66-426 2-318 (323)
10 PF00591 Glycos_transf_3: Glyc 100.0 2E-60 4.2E-65 464.3 16.0 248 147-429 2-252 (252)
11 PRK06078 pyrimidine-nucleoside 100.0 2.3E-57 5E-62 466.8 31.3 294 66-441 1-318 (434)
12 KOG1438 Anthranilate phosphori 100.0 1.7E-57 3.7E-62 431.8 19.7 295 109-441 52-371 (373)
13 TIGR02644 Y_phosphoryl pyrimid 100.0 8.4E-53 1.8E-57 430.2 29.2 298 69-441 2-316 (405)
14 PRK04350 thymidine phosphoryla 100.0 1.1E-50 2.4E-55 421.2 28.4 292 70-441 83-394 (490)
15 PRK05820 deoA thymidine phosph 100.0 1.4E-46 3E-51 387.6 32.9 301 66-441 2-322 (440)
16 TIGR02643 T_phosphoryl thymidi 100.0 1.3E-44 2.7E-49 371.4 30.5 306 68-441 3-321 (437)
17 TIGR02645 ARCH_P_rylase putati 100.0 1.8E-44 3.9E-49 374.5 31.0 303 69-441 87-399 (493)
18 TIGR03327 AMP_phos AMP phospho 100.0 5.6E-43 1.2E-47 363.3 32.2 306 68-441 87-399 (500)
19 COG0213 DeoA Thymidine phospho 100.0 2.3E-30 5E-35 260.7 25.1 308 66-441 2-319 (435)
20 PF02885 Glycos_trans_3N: Glyc 99.7 2.2E-17 4.7E-22 128.9 7.6 65 67-138 1-65 (66)
21 COG0512 PabA Anthranilate/para 99.5 2.2E-15 4.7E-20 139.4 2.5 53 22-74 126-190 (191)
22 KOG0026 Anthranilate synthase, 99.3 3.6E-13 7.9E-18 120.8 2.5 54 22-75 148-214 (223)
23 PLN02889 oxo-acid-lyase/anthra 98.9 3.9E-10 8.5E-15 126.3 2.8 56 21-76 217-336 (918)
24 PRK08007 para-aminobenzoate sy 98.9 5.5E-10 1.2E-14 104.6 2.3 54 21-74 123-187 (187)
25 PRK05637 anthranilate synthase 98.7 5.1E-09 1.1E-13 99.7 2.9 57 21-77 139-207 (208)
26 TIGR00566 trpG_papA glutamine 98.7 9.5E-09 2E-13 96.3 2.5 53 22-74 124-188 (188)
27 PRK07649 para-aminobenzoate/an 98.6 1.2E-08 2.6E-13 96.2 2.6 54 22-75 124-188 (195)
28 PRK08857 para-aminobenzoate sy 98.5 3.6E-08 7.7E-13 92.7 2.9 54 21-74 123-192 (193)
29 PRK11366 puuD gamma-glutamyl-g 98.5 5.2E-08 1.1E-12 95.6 2.3 57 20-76 177-245 (254)
30 PLN02335 anthranilate synthase 98.5 7.1E-08 1.5E-12 92.8 3.1 55 22-76 147-214 (222)
31 CHL00101 trpG anthranilate syn 98.5 6.1E-08 1.3E-12 90.9 2.4 52 22-73 124-187 (190)
32 PRK06895 putative anthranilate 98.4 1.3E-07 2.8E-12 88.6 2.7 52 22-73 125-187 (190)
33 PRK06774 para-aminobenzoate sy 98.4 1.5E-07 3.2E-12 88.3 2.4 53 21-73 123-190 (191)
34 PRK00758 GMP synthase subunit 98.3 2.3E-07 4.9E-12 86.4 2.5 53 22-74 119-180 (184)
35 PRK07765 para-aminobenzoate sy 98.3 3.5E-07 7.7E-12 87.5 3.0 55 22-76 128-193 (214)
36 PRK05670 anthranilate synthase 98.3 3.6E-07 7.9E-12 85.5 2.9 54 21-74 123-187 (189)
37 cd01744 GATase1_CPSase Small c 98.3 2.9E-07 6.2E-12 85.4 2.2 40 23-62 116-163 (178)
38 TIGR01815 TrpE-clade3 anthrani 98.2 4.1E-07 8.8E-12 100.9 2.4 58 21-78 640-711 (717)
39 PLN02347 GMP synthetase 98.2 4.9E-07 1.1E-11 97.3 2.5 60 23-82 141-210 (536)
40 CHL00188 hisH imidazole glycer 98.2 4E-07 8.7E-12 86.9 1.6 57 18-74 145-209 (210)
41 PRK13566 anthranilate synthase 98.2 5.1E-07 1.1E-11 100.2 2.4 55 22-76 651-719 (720)
42 cd01742 GATase1_GMP_Synthase T 98.2 5.9E-07 1.3E-11 83.0 1.7 50 23-72 123-181 (181)
43 TIGR00888 guaA_Nterm GMP synth 98.2 9.2E-07 2E-11 82.6 2.9 53 23-75 123-184 (188)
44 KOG1224 Para-aminobenzoate (PA 98.1 6.4E-07 1.4E-11 93.5 1.3 53 22-74 151-216 (767)
45 PRK12564 carbamoyl phosphate s 98.1 1E-06 2.2E-11 90.6 2.6 52 23-74 295-359 (360)
46 TIGR01368 CPSaseIIsmall carbam 98.1 2.3E-06 4.9E-11 87.9 3.0 53 23-75 290-356 (358)
47 cd01743 GATase1_Anthranilate_S 98.0 2E-06 4.2E-11 80.0 2.3 51 22-72 123-184 (184)
48 cd01745 GATase1_2 Subgroup of 98.0 1.8E-06 3.9E-11 80.9 1.2 41 22-62 127-173 (189)
49 PRK12838 carbamoyl phosphate s 98.0 3.4E-06 7.3E-11 86.5 2.9 54 23-76 284-351 (354)
50 PF00117 GATase: Glutamine ami 98.0 2.2E-06 4.8E-11 79.8 1.4 52 23-74 127-191 (192)
51 PLN02771 carbamoyl-phosphate s 97.9 3.6E-06 7.7E-11 87.5 2.0 43 23-65 357-407 (415)
52 PRK00074 guaA GMP synthase; Re 97.9 6.9E-06 1.5E-10 88.3 3.8 91 25-115 130-236 (511)
53 PRK14004 hisH imidazole glycer 97.9 3.5E-06 7.5E-11 80.5 1.2 52 22-74 149-209 (210)
54 PRK13141 hisH imidazole glycer 97.9 4.7E-06 1E-10 78.9 2.0 52 23-75 143-202 (205)
55 CHL00197 carA carbamoyl-phosph 97.9 6.8E-06 1.5E-10 85.0 3.4 54 23-76 308-375 (382)
56 PRK13146 hisH imidazole glycer 97.8 5.6E-06 1.2E-10 78.9 1.4 53 21-74 147-207 (209)
57 cd01748 GATase1_IGP_Synthase T 97.8 5.8E-06 1.3E-10 77.8 0.7 51 21-72 140-198 (198)
58 TIGR01823 PabB-fungal aminodeo 97.7 1.5E-05 3.2E-10 89.2 2.9 56 21-76 136-205 (742)
59 PRK13527 glutamine amidotransf 97.7 1.9E-05 4.2E-10 74.5 3.2 53 22-75 141-197 (200)
60 PRK09065 glutamine amidotransf 97.6 3.2E-05 6.9E-10 75.2 3.3 40 23-62 145-188 (237)
61 PRK07567 glutamine amidotransf 97.6 0.00012 2.7E-09 71.3 6.4 39 24-62 150-192 (242)
62 PRK13152 hisH imidazole glycer 97.6 3.5E-05 7.7E-10 72.8 2.1 50 22-73 143-200 (201)
63 PRK06490 glutamine amidotransf 97.5 4.5E-05 9.8E-10 74.3 2.6 39 24-63 140-182 (239)
64 TIGR01855 IMP_synth_hisH imida 97.5 3.6E-05 7.9E-10 72.5 1.7 51 21-73 137-195 (196)
65 PRK13170 hisH imidazole glycer 97.5 4E-05 8.6E-10 72.3 1.7 50 21-73 138-195 (196)
66 cd01741 GATase1_1 Subgroup of 97.5 3.7E-05 8.1E-10 71.5 1.3 41 21-61 136-180 (188)
67 COG0518 GuaA GMP synthase - Gl 97.5 3.8E-05 8.3E-10 72.7 1.0 52 24-75 135-193 (198)
68 PRK13181 hisH imidazole glycer 97.4 4.8E-05 1E-09 71.7 1.4 51 22-73 140-198 (199)
69 PRK13143 hisH imidazole glycer 97.3 9.8E-05 2.1E-09 69.8 2.0 52 23-75 139-198 (200)
70 PRK05665 amidotransferase; Pro 97.3 0.00063 1.4E-08 66.3 6.8 68 24-94 146-217 (240)
71 PRK13525 glutamine amidotransf 97.1 0.00029 6.2E-09 66.1 3.1 50 25-75 134-187 (189)
72 cd01747 GATase1_Glutamyl_Hydro 97.1 0.0003 6.4E-09 69.9 2.7 43 20-62 155-214 (273)
73 PF07722 Peptidase_C26: Peptid 97.0 0.0002 4.3E-09 68.7 0.5 45 17-61 166-217 (217)
74 COG2071 Predicted glutamine am 96.9 0.00028 6.2E-09 68.0 0.7 43 20-62 171-219 (243)
75 KOG1622 GMP synthase [Nucleoti 96.5 0.0034 7.4E-08 65.2 5.2 93 25-117 145-253 (552)
76 TIGR03800 PLP_synth_Pdx2 pyrid 96.5 0.002 4.2E-08 60.3 2.9 43 25-67 133-177 (184)
77 PLN02617 imidazole glycerol ph 96.5 0.0014 3.1E-08 70.8 2.3 54 23-76 149-211 (538)
78 PRK07053 glutamine amidotransf 96.4 0.0025 5.3E-08 61.9 3.5 40 22-62 137-180 (234)
79 PRK08250 glutamine amidotransf 96.4 0.0014 3.1E-08 63.6 1.5 40 22-62 139-182 (235)
80 cd01749 GATase1_PB Glutamine A 96.1 0.0034 7.4E-08 58.5 2.4 43 25-68 133-178 (183)
81 cd01746 GATase1_CTP_Synthase T 95.3 0.0081 1.8E-07 58.4 1.5 40 23-62 168-220 (235)
82 PRK06186 hypothetical protein; 95.2 0.017 3.7E-07 55.9 3.6 42 34-75 174-226 (229)
83 PRK13142 hisH imidazole glycer 95.1 0.014 3E-07 55.1 2.5 49 25-74 133-187 (192)
84 COG0118 HisH Glutamine amidotr 94.4 0.023 5.1E-07 53.6 2.2 22 54-75 179-203 (204)
85 TIGR01737 FGAM_synth_I phospho 94.2 0.012 2.6E-07 56.8 -0.3 29 45-73 184-225 (227)
86 TIGR00337 PyrG CTP synthase. C 93.2 0.055 1.2E-06 58.3 2.6 28 35-62 474-508 (525)
87 COG0505 CarA Carbamoylphosphat 93.2 0.078 1.7E-06 54.1 3.4 50 26-75 300-362 (368)
88 PRK05380 pyrG CTP synthetase; 92.3 0.082 1.8E-06 57.0 2.4 42 35-76 474-527 (533)
89 COG2313 IndA Uncharacterized e 91.1 1.7 3.6E-05 42.6 9.6 154 80-300 75-233 (310)
90 KOG3179 Predicted glutamine sy 90.1 0.52 1.1E-05 44.7 5.1 92 19-120 147-243 (245)
91 PLN02327 CTP synthase 89.7 0.27 5.8E-06 53.3 3.2 46 31-76 489-547 (557)
92 PF04282 DUF438: Family of unk 88.4 3.5 7.6E-05 32.7 7.9 56 68-133 2-57 (71)
93 PRK05703 flhF flagellar biosyn 87.3 14 0.0003 39.1 14.2 206 68-300 142-366 (424)
94 PRK11889 flhF flagellar biosyn 81.3 39 0.00085 35.8 14.0 179 102-300 189-386 (436)
95 PRK05368 homoserine O-succinyl 74.6 2.7 5.7E-05 42.6 3.1 47 33-79 204-255 (302)
96 COG0504 PyrG CTP synthase (UTP 74.4 3 6.6E-05 44.5 3.5 43 35-77 474-528 (533)
97 PRK12724 flagellar biosynthesi 74.2 1.3E+02 0.0028 32.2 15.6 136 148-300 225-368 (432)
98 COG2979 Uncharacterized protei 68.1 18 0.00038 34.7 6.7 71 54-132 96-170 (225)
99 PLN02832 glutamine amidotransf 68.0 3.9 8.5E-05 40.2 2.5 32 45-76 181-215 (248)
100 cd01554 EPT-like Enol pyruvate 66.6 19 0.0004 37.3 7.4 101 107-208 12-128 (408)
101 PRK12726 flagellar biosynthesi 66.5 57 0.0012 34.4 10.7 138 86-237 144-300 (407)
102 PRK00771 signal recognition pa 66.1 1.4E+02 0.0031 31.8 13.9 159 67-235 4-188 (437)
103 PRK14723 flhF flagellar biosyn 64.7 2.3E+02 0.005 32.5 15.8 151 81-245 122-286 (767)
104 TIGR03499 FlhF flagellar biosy 64.0 1.2E+02 0.0026 30.1 12.4 147 68-229 116-279 (282)
105 PRK03619 phosphoribosylformylg 59.3 4.7 0.0001 38.7 1.2 31 43-73 172-218 (219)
106 COG0311 PDX2 Predicted glutami 58.2 5.6 0.00012 37.3 1.5 78 1-78 103-192 (194)
107 KOG0623 Glutamine amidotransfe 57.5 5.1 0.00011 40.9 1.2 57 33-91 157-222 (541)
108 KOG3220 Similar to bacterial d 57.4 11 0.00023 36.2 3.2 97 180-299 4-112 (225)
109 PRK12830 UDP-N-acetylglucosami 55.8 35 0.00076 35.5 7.2 104 103-208 20-138 (417)
110 PRK09369 UDP-N-acetylglucosami 55.7 32 0.00069 35.9 6.9 98 111-208 27-139 (417)
111 PF11829 DUF3349: Protein of u 53.5 42 0.00092 28.2 5.9 55 78-138 33-89 (96)
112 TIGR01072 murA UDP-N-acetylglu 53.1 25 0.00053 36.5 5.5 99 109-208 25-138 (416)
113 PRK10867 signal recognition pa 49.2 3.4E+02 0.0074 28.9 13.3 169 67-245 8-210 (433)
114 cd01555 UdpNAET UDP-N-acetylgl 48.0 60 0.0013 33.4 7.4 100 109-208 14-128 (400)
115 cd01556 EPSP_synthase EPSP syn 46.7 55 0.0012 33.6 6.9 105 103-209 9-128 (409)
116 TIGR01356 aroA 3-phosphoshikim 43.8 63 0.0014 33.4 6.8 101 106-208 10-123 (409)
117 COG0128 AroA 5-enolpyruvylshik 42.8 72 0.0016 34.0 7.0 101 106-209 24-141 (428)
118 COG0563 Adk Adenylate kinase a 42.4 45 0.00097 30.9 4.9 94 149-248 3-104 (178)
119 COG0547 TrpD Anthranilate phos 42.2 57 0.0012 33.6 6.0 156 68-262 22-192 (338)
120 TIGR03481 HpnM hopanoid biosyn 41.4 75 0.0016 30.0 6.3 64 68-138 34-97 (198)
121 KOG1097 Adenine deaminase/aden 40.7 43 0.00093 35.2 4.9 151 110-303 176-329 (399)
122 TIGR01425 SRP54_euk signal rec 40.1 98 0.0021 33.0 7.5 160 67-236 8-196 (429)
123 PF02885 Glycos_trans_3N: Glyc 39.7 99 0.0021 23.6 5.7 46 87-138 3-48 (66)
124 PF08444 Gly_acyl_tr_C: Aralky 39.1 8.7 0.00019 31.8 -0.4 53 175-229 23-79 (89)
125 PRK10416 signal recognition pa 39.0 4.3E+02 0.0093 26.8 18.0 110 68-187 31-152 (318)
126 KOG0370 Multifunctional pyrimi 38.9 22 0.00048 41.1 2.6 53 26-78 290-355 (1435)
127 PRK14806 bifunctional cyclohex 38.2 98 0.0021 34.9 7.7 102 107-208 323-440 (735)
128 TIGR02644 Y_phosphoryl pyrimid 37.2 1.3E+02 0.0028 31.9 7.8 114 87-220 2-124 (405)
129 cd02072 Glm_B12_BD B12 binding 36.0 3.1E+02 0.0066 24.2 9.1 100 155-295 8-111 (128)
130 PHA00438 hypothetical protein 35.6 60 0.0013 26.2 3.8 59 68-136 22-80 (81)
131 KOG2387 CTP synthase (UTP-ammo 35.2 21 0.00046 37.9 1.6 27 35-61 495-528 (585)
132 cd08788 CARD_NOD2_2_CARD15 Cas 34.4 89 0.0019 25.4 4.7 56 68-140 16-72 (81)
133 TIGR00959 ffh signal recogniti 33.3 4.1E+02 0.009 28.2 11.0 159 67-234 7-194 (428)
134 KOG1559 Gamma-glutamyl hydrola 33.2 10 0.00023 37.1 -0.9 9 54-62 262-270 (340)
135 PRK14974 cell division protein 32.5 5.7E+02 0.012 26.2 15.5 129 102-235 76-235 (336)
136 cd08324 CARD_NOD1_CARD4 Caspas 31.8 1.4E+02 0.003 24.5 5.5 57 68-137 17-73 (85)
137 PRK02427 3-phosphoshikimate 1- 30.3 1.9E+02 0.0041 30.1 7.9 101 104-208 22-138 (435)
138 PRK11860 bifunctional 3-phosph 30.0 1.3E+02 0.0028 33.8 6.8 104 103-208 23-141 (661)
139 PHA02519 plasmid partition pro 28.1 91 0.002 32.6 5.0 61 121-184 81-142 (387)
140 COG3492 Uncharacterized protei 28.0 1.2E+02 0.0025 25.3 4.4 48 68-115 48-98 (104)
141 PLN02338 3-phosphoshikimate 1- 27.8 1.9E+02 0.0042 30.3 7.5 101 107-208 24-147 (443)
142 PF08069 Ribosomal_S13_N: Ribo 27.7 83 0.0018 24.2 3.3 28 80-114 27-54 (60)
143 PRK11861 bifunctional prephena 27.2 2E+02 0.0043 32.3 7.8 96 112-208 267-377 (673)
144 COG2854 Ttg2D ABC-type transpo 27.1 2E+02 0.0043 27.5 6.5 64 68-138 37-103 (202)
145 COG3926 zliS Lysozyme family p 26.7 55 0.0012 31.8 2.7 42 51-92 14-65 (252)
146 PF06844 DUF1244: Protein of u 26.4 57 0.0012 25.5 2.2 46 68-113 17-65 (68)
147 PRK14722 flhF flagellar biosyn 26.2 7.7E+02 0.017 25.8 15.6 148 87-247 77-240 (374)
148 COG0334 GdhA Glutamate dehydro 26.1 87 0.0019 33.1 4.3 63 32-94 29-125 (411)
149 COG0540 PyrB Aspartate carbamo 26.1 7.2E+02 0.016 25.4 11.2 156 117-293 11-185 (316)
150 PF05494 Tol_Tol_Ttg2: Toluene 25.9 96 0.0021 28.1 4.2 62 70-138 7-71 (170)
151 cd08783 Death_MALT1 Death doma 25.0 4.2E+02 0.0091 22.3 7.7 62 65-135 22-85 (97)
152 COG1936 Predicted nucleotide k 24.9 52 0.0011 30.8 2.1 26 149-181 3-28 (180)
153 PF14451 Ub-Mut7C: Mut7-C ubiq 24.4 57 0.0012 26.4 2.1 19 189-207 28-46 (81)
154 PLN02460 indole-3-glycerol-pho 23.7 1.8E+02 0.004 30.0 6.0 106 185-303 126-241 (338)
155 cd06257 DnaJ DnaJ domain or J- 23.5 69 0.0015 22.8 2.2 22 199-220 2-23 (55)
156 PRK12723 flagellar biosynthesi 23.1 8.8E+02 0.019 25.4 15.3 156 80-248 105-281 (388)
157 TIGR00064 ftsY signal recognit 22.4 7.1E+02 0.015 24.5 9.9 84 147-235 73-167 (272)
158 PRK15117 ABC transporter perip 22.2 3.3E+02 0.0072 25.9 7.2 63 69-138 36-101 (211)
159 PF08784 RPA_C: Replication pr 21.9 75 0.0016 26.3 2.4 33 59-95 59-91 (102)
160 PRK09367 histidine ammonia-lya 21.8 5E+02 0.011 28.3 9.2 113 70-217 79-194 (500)
161 PF00226 DnaJ: DnaJ domain; I 21.8 96 0.0021 23.0 2.8 32 198-237 1-32 (64)
162 COG3640 CooC CO dehydrogenase 21.7 1.4E+02 0.003 29.4 4.5 62 149-220 3-65 (255)
163 PF13833 EF-hand_8: EF-hand do 21.3 3E+02 0.0064 19.4 5.3 41 68-114 10-51 (54)
164 PRK08356 hypothetical protein; 21.0 68 0.0015 29.6 2.2 33 148-187 7-39 (195)
165 PRK09875 putative hydrolase; P 20.9 2.7E+02 0.0059 27.9 6.6 98 118-220 92-202 (292)
166 PRK13705 plasmid-partitioning 20.7 1.4E+02 0.003 31.2 4.6 61 121-184 81-142 (388)
No 1
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.5e-90 Score=731.74 Aligned_cols=373 Identities=18% Similarity=0.269 Sum_probs=341.3
Q ss_pred HHhhcccccccCCCceEEeecCCCceeeeccC----CCCCCCCCC---cccc------------------cHHHHHHHHh
Q 013432 22 MNTFWPLLMRALPPDVIFIADPEGSIMGGGGS----IGPHYSGND---PREM------------------RLVGALREVL 76 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a~~~~~im~~~h~----~g~qfhpes---~~G~------------------~l~~~L~kl~ 76 (443)
..||||+.+.++|+.++++|+.||.|||++|+ ||||||||| ++|+ .++++|+++.
T Consensus 129 v~~~Hs~~v~~lP~~l~vlA~sd~~v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~~~~~~~~~~~~~~~l~~~~ 208 (531)
T PRK09522 129 VARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPTNTLQPILEKLY 208 (531)
T ss_pred EEEehheecccCCCCcEEEEecCCCEEEEEECCCCEEEEEecCccccCcchHHHHHHHHHHHhhcCCCCCCHHHHHHHhh
Confidence 56899999999999999999668999999996 999999998 5553 4667778889
Q ss_pred cCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCC
Q 013432 77 AGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPY 156 (443)
Q Consensus 77 ~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~~~vD~~Gtgg 156 (443)
.|++||++||+++|+.|| +|+++|.|+||||++||+||||+|||+||++||++++.+++.++.+.+|+|||||
T Consensus 209 ~~~~Lt~eea~~~~~~il-------~g~~~~~qi~AfL~alr~kget~eEl~g~~~a~~~~~~~~~~~~~~~iD~~gtGg 281 (531)
T PRK09522 209 QAQTLSQQESHQLFSAVV-------RGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGG 281 (531)
T ss_pred cCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCCCcccccCCCC
Confidence 999999999999999999 9999999999999999999999999999999999988776544334799999999
Q ss_pred CCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHH
Q 013432 157 DGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 236 (443)
Q Consensus 157 DG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa 236 (443)
||++|||+||+ +|+|+|++|+||+|||||++||++|| +|+||+|||+++++++++.++|++ .||+|+++|.|||+
T Consensus 282 dg~~t~nist~-aa~v~A~~Gv~V~kHG~r~~ss~~Gs--advlealGi~~~~~~~~~~~~l~~--~g~~fl~ap~~hpa 356 (531)
T PRK09522 282 DGSNSINISTA-SAFVAAACGLKVAKHGNRSVSSKSGS--SDLLAAFGINLDMNADKSRQALDE--LGVCFLFAPKYHTG 356 (531)
T ss_pred CCCCCcccHHH-HHHHHHhCCCcEEEeCCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEEEhhHhCHH
Confidence 99999999998 99999999999999999999999999 999999999999999999999999 66777889999999
Q ss_pred hHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCCcccccccccccc
Q 013432 237 LYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVN 316 (443)
Q Consensus 237 ~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG~~e~s~~~~~~~ 316 (443)
|++++++|++||+||++|+...+ +||+++++||+|||||+|.++++++++++|.++++|||| +|+||+|+.+
T Consensus 357 m~~~~~~R~~Lg~rT~fN~lgpL---~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G-~G~DEis~~~---- 428 (531)
T PRK09522 357 FRHAMPVRQQLKTRTLFNVLGPL---INPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHS-GGMDEVSLHA---- 428 (531)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHh---cCCCCCCcEEEEeeCHHHHHHHHHHHHHhCCCeEEEEEC-CCccccCCCC----
Confidence 99999999999999988877664 688888999999999999999999999999999999999 8999998654
Q ss_pred ccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHHhCCCCC-ChHHHH
Q 013432 317 ASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRGEKG-PTYDRI 393 (443)
Q Consensus 317 ~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~iL~G~~~-~~~d~v 393 (443)
+|++++ .+|++.+ |+|+|+|||+++++++++ ++++++|+++++++|+|+.+ ...|+|
T Consensus 429 -----------------~t~v~~~~~g~i~~---~~~~P~d~Gl~~~~~~~i~g~~~~~na~~~~~vl~G~~~~~~~~~v 488 (531)
T PRK09522 429 -----------------PTIVAELHDGEIKS---YQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAV 488 (531)
T ss_pred -----------------ceEEEEEcCCeEEE---EEECHHHcCCCCCCHHHhcCCCHHHHHHHHHHHHCCCCCchhHHHH
Confidence 356654 4787764 999999999999999886 78999999999999999843 457999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHH
Q 013432 394 VLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIK 437 (443)
Q Consensus 394 ~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~ 437 (443)
++|||++||++| .+++++|+++|+++|+||+|+++|++|++
T Consensus 489 ~~naa~~l~~~g---~~~l~~g~~~a~~~i~sG~a~~~l~~l~~ 529 (531)
T PRK09522 489 AANVAMLMRLHG---HEDLQANAQTVLEVLRSGSAYDRVTALAA 529 (531)
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999985 39999999999999999999999999986
No 2
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.6e-89 Score=726.43 Aligned_cols=380 Identities=23% Similarity=0.382 Sum_probs=349.7
Q ss_pred HHhhcccccc--cCCCceEEee-cCCCceeeeccC----CCCCCCCCC---c--------------ccccHHHHHHHHhc
Q 013432 22 MNTFWPLLMR--ALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---P--------------REMRLVGALREVLA 77 (443)
Q Consensus 22 ~~ryhsl~~~--~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~--------------~G~~l~~~L~kl~~ 77 (443)
..+||++.++ ++|+.++++| ++||.|||++|+ ||||||||+ + .+++++++|+++.+
T Consensus 125 v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~a~~~~~~pi~GvQFHPE~~~t~~g~~i~~nFl~~~~~~~~~~~~i~~l~~ 204 (534)
T PRK14607 125 ATRYHSLVVEEASLPECLEVTAKSDDGEIMGIRHKEHPIFGVQFHPESILTEEGKRILKNFLNYQREEIDIKSYLKKLVE 204 (534)
T ss_pred EeeccchheecccCCCCeEEEEEcCCCCEEEEEECCCCEEEEEeCCCCCCChhHHHHHHHHHHHhhccCCHHHHHHHhcc
Confidence 4689999875 6999999999 899999999996 999999996 1 23568899999999
Q ss_pred CCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCC
Q 013432 78 GGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD 157 (443)
Q Consensus 78 g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggD 157 (443)
|++||++||+++|+.|| +|+++|.|+||||++||+||||+|||+||++||++++.+++.+..+.+|+||||||
T Consensus 205 g~~Lt~~ea~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~~~~~D~~gtggd 277 (534)
T PRK14607 205 GEDLSFEEAEDVMEDIT-------DGNATDAQIAGFLTALRMKGETADELAGFASVMREKSRHIPAPSPRTVDTCGTGGD 277 (534)
T ss_pred CCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCCCCceEEccCCCC
Confidence 99999999999999999 99999999999999999999999999999999999998776543347999999999
Q ss_pred CCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHHh
Q 013432 158 GNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSL 237 (443)
Q Consensus 158 G~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa~ 237 (443)
|++|||+||+ +|+++|++|+||+|||||++|||+|| +|+||+|||+++++++++.++|++ .||+|+++|.|||+|
T Consensus 278 g~~t~nist~-~a~v~A~~G~~V~kHG~r~~ss~~Gs--advle~lGv~~~~~~~~~~~~l~~--~g~~fl~ap~~~p~l 352 (534)
T PRK14607 278 GFGTFNISTT-SAFVVAAAGVPVAKHGNRAVSSKSGS--ADVLEALGVKLEMTPEEAASVLRE--TGFSFLFAPLFHPAM 352 (534)
T ss_pred CCCccccHHH-HHHHHHhCCCcEEEECCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEeeccccCHHH
Confidence 9999999998 99999999999999999999999999 999999999999999999999999 777888899999999
Q ss_pred HHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCCccccccccccccc
Q 013432 238 YSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNA 317 (443)
Q Consensus 238 ~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG~~e~s~~~~~~~~ 317 (443)
++++++|++||+||++|+..++ +||+++++||+|||||+|.++|+++++.+|.++++||||.||+||+++.++
T Consensus 353 ~~~~~~R~~Lg~rTifN~lgpL---~NP~~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~vv~G~~G~dE~s~~~~---- 425 (534)
T PRK14607 353 KHAAPARRELGIRTAFNLLGPL---TNPARVKYQIVGVFDPSYAEPLAQALQRLGTERAMVVSGIDGYDEISTCGP---- 425 (534)
T ss_pred HHHHHHHHHhCCCcHHHhHHhc---cCCCCCCcEEEeeCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCccccCCCc----
Confidence 9999999999999988877664 788888999999999999999999999999999999999999999986543
Q ss_pred cCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHHhCCCC-CChHHHHH
Q 013432 318 SKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRGEK-GPTYDRIV 394 (443)
Q Consensus 318 ~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~iL~G~~-~~~~d~v~ 394 (443)
|.+++ .+|++.+ ++|+|+|||+++.+++++ ++++++|+++++++|+|+. ++.+|.|+
T Consensus 426 -----------------t~v~~~~~g~i~~---~~i~p~~~Gl~~~~~~~~~~~~~~~na~~~~~vl~G~~~~~~~~~v~ 485 (534)
T PRK14607 426 -----------------TQILELEDGEIVT---YTFDPEELGLKRVDPEELKGGDPQENYRLAEDVLKGEPRRPQRDAVA 485 (534)
T ss_pred -----------------eEEEEEcCCEEEE---EEEcHHHCCCCCCCHHHcCCCCHHHHHHHHHHHHCCCCCChHHHHHH
Confidence 45554 4777654 999999999999988775 7899999999999999984 78999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhccC
Q 013432 395 LNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHKL 442 (443)
Q Consensus 395 lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~~ 442 (443)
+|||++||++| +++|++||+++|+++|+||+|+++|++|+++++++
T Consensus 486 lnaA~~L~~~g--~~~s~~eg~~~a~~~i~sG~a~~~l~~~~~~~~~~ 531 (534)
T PRK14607 486 LNAGAALYLVG--EADSIKEGVGKALDLIDDGRAYKKLEEVMDLSKTL 531 (534)
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 99999999986 78999999999999999999999999999998865
No 3
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-87 Score=666.93 Aligned_cols=335 Identities=27% Similarity=0.355 Sum_probs=310.2
Q ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCC
Q 013432 66 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 145 (443)
Q Consensus 66 ~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~ 145 (443)
+.++.+|+++.+|++|+++||+++|+.|| +|+++|+|+||||+|||+||||++||+||++||++++.+++.+.
T Consensus 2 ~~~~~~l~kl~~g~~L~~~eA~~l~~~il-------~g~~~~~qi~A~L~Alr~Kget~eEi~G~~~am~~~~~~~~~p~ 74 (338)
T COG0547 2 MDLRKILKKLGRGRDLDREEARELFKAIL-------SGEASPAQIGAFLTALRIKGETPEEIAGFAEAMREHAPKLPVPA 74 (338)
T ss_pred chHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccCCCCC
Confidence 45889999999999999999999999999 99999999999999999999999999999999999887777654
Q ss_pred CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCcee
Q 013432 146 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 225 (443)
Q Consensus 146 ~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf 225 (443)
...+|+|||||||.+||||||+ +|+|+|++|+||+|||||++|||+|| +|+||+|||+++++|++++++|++ .||
T Consensus 75 ~~~vDi~GTGGDg~~T~NiSt~-aA~v~A~~Gv~VaKHGnrs~sSksGs--aDvleaLGv~l~~~~e~~~~~l~~--~g~ 149 (338)
T COG0547 75 ADPVDIVGTGGDGANTINISTA-AAIVAAAAGVPVAKHGNRSVSSKSGS--ADVLEALGVNLELSPEQAARALEE--TGI 149 (338)
T ss_pred CCCCCeecCCCCCCCcccchHH-HHHHHHhCCCcEEeECCCCCCCCCcH--HHHHHHcCCCCCCCHHHHHHHHHh--cCe
Confidence 4348999999999999999999 99999999999999999999999999 999999999999999999999999 667
Q ss_pred EEeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCCc
Q 013432 226 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA 305 (443)
Q Consensus 226 ~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG~ 305 (443)
+|+|+|.|||+|++++++|++||+||++|....+ +||+++.+||+|||||+|.+++|++++++|.++++||||.||+
T Consensus 150 ~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL---~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G~~Gl 226 (338)
T COG0547 150 GFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPL---LNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHGLEGL 226 (338)
T ss_pred EEEEccccCHHHHHHHHHHHHcCCCchHHhhccc---cCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEECCCCc
Confidence 7788999999999999999999999976666543 5677778999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHHhC
Q 013432 306 LSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALR 383 (443)
Q Consensus 306 ~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~iL~ 383 (443)
||+++.+ +|.|++ .+|++++ |+++|+|||+++++++++ +++|++|+++++++|+
T Consensus 227 DE~~~~~---------------------~t~v~~l~~g~i~~---~~l~pe~~Gl~~~~~~~l~~~~~~ena~~~~~vL~ 282 (338)
T COG0547 227 DEVTPTG---------------------TTLVAELKDGEIRE---YTLTPEDFGLERAPLEDLPGGDPEENAEILRAVLA 282 (338)
T ss_pred ccccCCC---------------------CceEEEEcCCceEE---EEeCHHhcCCCCCchhhcCCCCHHHHHHHHHHHHC
Confidence 9998653 366665 4778875 999999999999988875 6799999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 384 GEKGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 384 G~~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
|++++.+|+|++|||++||++| +++|++||+++|+++|+||+|+++|++++.+++.
T Consensus 283 G~~~~~~d~v~~Naa~~L~~~g--~a~~l~eg~~~A~~~i~sG~a~~~l~~l~~~~~~ 338 (338)
T COG0547 283 GEEGPARDAVALNAAAALYAAG--KAESLKEGIALALEAIDSGAALEKLEELVAFSKS 338 (338)
T ss_pred CCCcchHHHHHHHHHHHHHHcC--ccCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC
Confidence 9888999999999999999985 7999999999999999999999999999999863
No 4
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=1.5e-83 Score=648.79 Aligned_cols=333 Identities=23% Similarity=0.296 Sum_probs=308.8
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCC
Q 013432 67 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADV 146 (443)
Q Consensus 67 ~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~ 146 (443)
.++++|+++.+|++||+|||+++|+.|| +| ++|.|+||||++||+||||+|||+||++||++++.+++.. .
T Consensus 3 ~~~~~l~~l~~g~~Lt~eEa~~~~~~il-------~~-~~~~qigAfL~alr~kget~eEiag~~~a~~~~~~~~~~~-~ 73 (343)
T PLN02641 3 SFRQLIESLIQGTDLTEEEAEAALDFLL-------DD-ADEAQISAFLVLLRAKGETFEEIAGLARAMIKRARKVDGL-V 73 (343)
T ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCC-C
Confidence 3789999999999999999999999999 78 9999999999999999999999999999999998766532 3
Q ss_pred CCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeE
Q 013432 147 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFA 226 (443)
Q Consensus 147 ~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~ 226 (443)
+.+|||||||||++|||+||+ +|+++|++|+||+|||||++||++|| +|+||+|||+++++++++.++|++ .||+
T Consensus 74 ~~~D~~gtGGdg~~t~nist~-aa~v~A~~G~~V~kHGnr~~ss~~Gs--aDvLeaLGi~~~~~~~~~~~~l~~--~g~~ 148 (343)
T PLN02641 74 DAVDIVGTGGDGANTVNISTG-SSILAAACGAKVAKQGNRSSSSACGS--ADVLEALGVAIDLGPEGVKRCVEE--VGIG 148 (343)
T ss_pred CCCceeCCCCCCCCccccHHH-HHHHHHhCCCeEEEeCCCCCCCccCH--HHHHHHcCCCCCCCHHHHHHHHHh--cCcE
Confidence 479999999999999999998 99999999999999999999999999 999999999999999999999999 6677
Q ss_pred EeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCCcc
Q 013432 227 YVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGAL 306 (443)
Q Consensus 227 fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG~~ 306 (443)
|+++|.|||+|++++++|++||+||++|+..++ +||+++++||+|||||+|.++|+++++.+|.++++|||| +|+|
T Consensus 149 fl~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL---~NPa~~~~~v~GV~~~~~~~~~a~al~~lG~~~alVv~G-~G~D 224 (343)
T PLN02641 149 FMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPM---LNPARVPHAVVGVYHESLVEKMAKALQRFGMKRALVVHS-EGLD 224 (343)
T ss_pred EEechhhCHHHHHHHHHHHHhCCCcHHHHHHHh---cCCCCCCceEEeeeCHHHHHHHHHHHHHcCCCeEEEEec-CCCC
Confidence 788999999999999999999999999887764 788899999999999999999999999999999999999 7999
Q ss_pred ccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHHhCC
Q 013432 307 SMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRG 384 (443)
Q Consensus 307 e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~iL~G 384 (443)
|+++.++ |++++ .+|++.+ |+|+|+|||+++++++++ ++++++|+++++++|+|
T Consensus 225 Eis~~g~---------------------t~v~~~~~g~i~~---~~~~p~d~Gl~~~~~~~l~~~~~~~na~~~~~vL~G 280 (343)
T PLN02641 225 EMSPLGP---------------------GDVLEVTPEKIEE---FSFDPLDFGIPRCTLEDLRGGDPDYNAKVLRDVLSG 280 (343)
T ss_pred ccccCcc---------------------eEEEEEeCCceEE---EEeCHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCC
Confidence 9986643 55554 4777654 999999999999998876 78999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhccCC
Q 013432 385 EKGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHKLK 443 (443)
Q Consensus 385 ~~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~~~ 443 (443)
+.++.+|.|++|||++||++| +++|++||+++|+++|+||+|+++|++|++++++++
T Consensus 281 ~~~~~~d~v~lNaa~~L~~~g--~~~sl~eg~~~A~~~i~sG~a~~~l~~~~~~~~~~~ 337 (343)
T PLN02641 281 EKGAIADALILNAAAALLVSG--LAKTLAEGVALARETQESGKAIKTLDSWIKISQELK 337 (343)
T ss_pred CCcchHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhh
Confidence 988899999999999999986 789999999999999999999999999999998754
No 5
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=2e-82 Score=641.75 Aligned_cols=329 Identities=29% Similarity=0.391 Sum_probs=301.4
Q ss_pred cHHHHHHHHhcCC----CCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC
Q 013432 67 RLVGALREVLAGG----HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPP 142 (443)
Q Consensus 67 ~l~~~L~kl~~g~----~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~ 142 (443)
+++++|+++.+|+ +||++||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||++++.+++
T Consensus 4 ~~~~~i~~l~~g~~~~~~Lt~eea~~~~~~il-------~g~~~~~q~aAfL~alr~KGET~eEiaG~~~a~~~~~~~~~ 76 (342)
T PRK07394 4 RFRELLKKVGSGEHTSKDLTREEAADALKLML-------LGEATPAQIGAFLIAHRIKRPTPEELAGMLDTYDELGPKLQ 76 (342)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCCC
Confidence 3889999999996 999999999999999 99999999999999999999999999999999999887765
Q ss_pred CCCC-CCceEEcCCCCCC-CccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCC-CHHHHHHHHH
Q 013432 143 VADV-KSLTHYGEPYDGN-TRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL-SVLQAKELLE 219 (443)
Q Consensus 143 ~~~~-~~vD~~GtggDG~-~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~-s~~~~~~~Le 219 (443)
.+.. +.+|+|||||||+ ++||+||+ +|+++|++|+||+|||||++|||+|.|++|+||+|||+++. +|+++.++|+
T Consensus 77 ~~~~~~~~d~~GtggDG~~~t~NiSt~-aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~~~~~~~~~~l~ 155 (342)
T PRK07394 77 SPSNQRPPIVFGMPYDGRSRTAPIYPL-TALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSLEQVQEGFE 155 (342)
T ss_pred CCCCCCceeEEeCCCCCCCCCcccHHH-HHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 4322 3689999999996 89999998 99999999999999999999999995559999999999998 9999999999
Q ss_pred hcCceeEEeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhc-cCCCeEEEeecCCCchHHHHHHHHHcCCceEEE
Q 013432 220 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA-QGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLV 298 (443)
Q Consensus 220 ~~g~gf~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp-~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alV 298 (443)
+ .||+|+++|.|||+|++++++|++||+||++|+..++ +|| +++++||+|||||+|.++|+++++.+|.++++|
T Consensus 156 ~--~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL---~NP~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~v 230 (342)
T PRK07394 156 Q--TGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELI---WTPHQGDHHLVSGFVHPPTEARAWEALELRGETNFTT 230 (342)
T ss_pred H--cCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCCceEEEeeCHHHHHHHHHHHHHcCCCeEEE
Confidence 9 7788888999999999999999999999998888765 788 577899999999999999999999999999999
Q ss_pred EecCCCccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCcCCCHHHHHHH
Q 013432 299 VKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRADRSVSKNIEL 377 (443)
Q Consensus 299 v~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~~na~~ 377 (443)
|||.||+||+++.. +|.+++ .+|++.+ |+|+|+|||++++++ .++++++|+++
T Consensus 231 v~G~~G~dE~s~~~---------------------~t~v~~~~~g~i~~---~~i~p~d~G~~~~~l--~~~~~~~na~~ 284 (342)
T PRK07394 231 VKGLEGSCDLPISR---------------------TAIIGRVQNGHFER---LILHPRDYGCGGKDV--PWESTEEWLEQ 284 (342)
T ss_pred EEcCCCceeccCCC---------------------CeEEEEEcCCeEEE---EEECHHHcCCCcccC--CCCCHHHHHHH
Confidence 99999999997543 355554 4777654 899999999998755 36899999999
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHH
Q 013432 378 GLAALRGEKGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYI 436 (443)
Q Consensus 378 ~~~iL~G~~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~ 436 (443)
++++|+|+.++.+|.|++|||++||++| +++|++||+++|+++|+||+|+++|++|+
T Consensus 285 ~~~vl~G~~~~~~~~v~lNaa~~L~~~g--~~~s~~eg~~~A~~~i~sG~a~~~l~~~~ 341 (342)
T PRK07394 285 AQAALNGEPGPLTQALIWNGGFYLWRAG--ISSSLEEGIEKAEELLNSGKALQKLQQLI 341 (342)
T ss_pred HHHHHCCCCcchhHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 9999999988899999999999999985 79999999999999999999999999997
No 6
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.3e-78 Score=612.08 Aligned_cols=335 Identities=25% Similarity=0.366 Sum_probs=310.8
Q ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCC
Q 013432 66 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 145 (443)
Q Consensus 66 ~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~ 145 (443)
|+++++|+++.+|++||++||+++|+.|+ +|+++|.|+||||++||+||||+|||+||++||+++..+++.++
T Consensus 1 ~~~~~~i~~l~~g~~Lt~~Ea~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~ 73 (339)
T PRK00188 1 MTMKELLEKLVEGEDLSEEEAEELMDAIM-------SGEATPAQIAAFLTALRVKGETVDEIAGAARAMREHAVPVPDPD 73 (339)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCC
Confidence 56899999999999999999999999999 99999999999999999999999999999999999988776543
Q ss_pred CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCcee
Q 013432 146 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 225 (443)
Q Consensus 146 ~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf 225 (443)
+.+|+|||||||+++||+||+ +|+++|++|+||+|||||++||++|| +|+||+||++++.++++++++|++ .||
T Consensus 74 -~~iDi~gtggdg~~t~nis~~-~a~vlA~~G~~V~kHG~~~~~s~~Gs--advLe~lGi~~~~~~~~~~~~l~~--~g~ 147 (339)
T PRK00188 74 -DAVDIVGTGGDGANTFNISTA-AAFVAAAAGVKVAKHGNRSVSSKSGS--ADVLEALGVNLDLSPEQVARCLEE--VGI 147 (339)
T ss_pred -CCCcccCCCCCCCCccchHHH-HHHHHHhCCCEEEEECCCCCCCCcCH--HHHHHHcCCCCCCCHHHHHHHHHH--cCc
Confidence 479999999999999999998 99999999999999999999999999 899999999999999999999999 677
Q ss_pred EEeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCCc
Q 013432 226 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA 305 (443)
Q Consensus 226 ~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG~ 305 (443)
+|+++|.|||+|++++++|++||+||++|+.+++ +||++++++|+|||||+|.++|+++++.+|.++++||||.||+
T Consensus 148 ~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L---~NP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~~vv~G~~G~ 224 (339)
T PRK00188 148 GFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPL---TNPARPKRQLIGVYSPDLLEPMAEVLKRLGSKRALVVHGSDGL 224 (339)
T ss_pred EEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCCEEEeecCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 8888999999999999999999999999999875 7899999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHHhC
Q 013432 306 LSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALR 383 (443)
Q Consensus 306 ~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~iL~ 383 (443)
||+++.. +|.++. .+|++. ++.|+|++||++..+.+++ ++++++|+++++++|+
T Consensus 225 dE~~~~~---------------------~t~v~~~~~g~~~---~~~i~p~~~Gl~~~~~~~~~~~~~~~~a~~~~~vl~ 280 (339)
T PRK00188 225 DEISLTG---------------------PTTVAELKDGEIR---EYTLTPEDFGLPRAPLEDLRGGDPEENAAILRAVLQ 280 (339)
T ss_pred eeecCCC---------------------CEEEEEEcCCEEE---EEEECHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHC
Confidence 9998653 255554 467654 3899999999999877654 6899999999999999
Q ss_pred CC-CCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhccC
Q 013432 384 GE-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHKL 442 (443)
Q Consensus 384 G~-~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~~ 442 (443)
|+ .++.+|.|++|||++||++| ++.|++||+++|+++|+||+|+++|++|++.+++.
T Consensus 281 G~~~~~~~~~v~lnaA~~L~~~g--~~~s~~e~~~~A~~~i~sG~a~~~l~~~~~~~~~~ 338 (339)
T PRK00188 281 GKGPGAARDAVLLNAAAALYVAG--KADDLKEGVELAREAIDSGAALAKLEELVAFSQEL 338 (339)
T ss_pred CCCCCchHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhccC
Confidence 96 67899999999999999986 78999999999999999999999999999998763
No 7
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=2e-77 Score=604.09 Aligned_cols=326 Identities=23% Similarity=0.323 Sum_probs=301.4
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCC-CCCCce
Q 013432 72 LREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA-DVKSLT 150 (443)
Q Consensus 72 L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~-~~~~vD 150 (443)
|+++.+|++||++||+++|+.|+ +|+++|.|+||||++||+||||+||++||++||+++..+++++ ..+.+|
T Consensus 1 l~~~~~~~~Lt~eEa~~~~~~il-------~g~~~~~q~~AfL~alr~kget~~Elag~~~a~~~~~~~~~~~~~~~~iD 73 (330)
T TIGR01245 1 LEKLIDGKDLSRDEAEQLMKEIM-------SGEASPAQIAAILAALRIKGETPEEITGFAKAMREHAVKVPGRPVEDLVD 73 (330)
T ss_pred CchhhcCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCccCCCccc
Confidence 46788999999999999999999 9999999999999999999999999999999999998877653 345799
Q ss_pred EEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEecc
Q 013432 151 HYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSL 230 (443)
Q Consensus 151 ~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a 230 (443)
+|||||||+++||+||+ +|+++|++|+||+|||||++||++|+ +|+||+|||++++++++++++|++ .||+|+++
T Consensus 74 ~~gtggdg~~t~nist~-~a~vlA~~G~~V~kHG~r~~~s~~Gs--~d~le~LGi~~~~s~~~~~~~l~~--~g~~f~~~ 148 (330)
T TIGR01245 74 IVGTGGDGANTINISTA-SAFVAAAAGVKVAKHGNRSVSSKSGS--ADVLEALGVNLDLGPEKVARSLEE--TGIGFLFA 148 (330)
T ss_pred ccCCCCCCCCccccHHH-HHHHHHhCCCEEEEeCCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEeec
Confidence 99999999999999998 99999999999999999999999999 899999999999999999999999 67788889
Q ss_pred chhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCCcccccc
Q 013432 231 REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTT 310 (443)
Q Consensus 231 ~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG~~e~s~ 310 (443)
|.|||+|++++++|++||+||++|+.+++ +||++++++|+|||||+|.++|+++++.+|.++++||||.||+||+++
T Consensus 149 ~~~~P~~~~l~~lR~~lg~rT~~N~lgpL---~NP~~~~~~v~Gv~~~~~~~~~a~~~~~lg~~~~~vv~G~~G~dE~s~ 225 (330)
T TIGR01245 149 PLYHPAMKHVAPVRRELGVRTVFNLLGPL---TNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVHGDDGLDEISL 225 (330)
T ss_pred hhhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCCEEEcccCHHHHHHHHHHHHHhCCCeEEEEECCCCceeecC
Confidence 99999999999999999999999997764 789999999999999999999999999999999999999999999986
Q ss_pred ccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHHhCCCC-C
Q 013432 311 RLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRGEK-G 387 (443)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~iL~G~~-~ 387 (443)
.+. |.+++ .+|++.+ ++|+|+|||++..+++++ ++++++|+++++++|+|+. +
T Consensus 226 ~~~---------------------t~v~~~~~g~~~~---~~i~p~~~g~~~~~~~~~~~~~~~~~a~~~~~~l~G~~~~ 281 (330)
T TIGR01245 226 TGP---------------------TTVAELKDGEIRE---YTLDPEDFGLPRAPLEELAGGSPEENAEILRDILRGKGSG 281 (330)
T ss_pred CCc---------------------EEEEEEECCEEEE---EeCCHHHcCCCcCCHhhcCCCCHHHHHHHHHHHHCCCCCC
Confidence 542 55554 5777654 899999999999877765 6899999999999999984 7
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHH
Q 013432 388 PTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKI 438 (443)
Q Consensus 388 ~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~ 438 (443)
+..|.|++|||++||++| +++|+++|+++|+++|+||+|+++|++|+++
T Consensus 282 ~~~~~v~lnaA~~L~~~g--~~~s~~e~~~~a~~~i~sG~a~~~l~~~~~~ 330 (330)
T TIGR01245 282 AKRDIVALNAAAALYVAG--RASDLKEGVELALEAIDSGAAAEKLEELVAF 330 (330)
T ss_pred cHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHhC
Confidence 889999999999999985 7899999999999999999999999999873
No 8
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=4.9e-75 Score=580.76 Aligned_cols=306 Identities=19% Similarity=0.225 Sum_probs=279.0
Q ss_pred ccHHHHHHHHhcC----CCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC
Q 013432 66 MRLVGALREVLAG----GHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP 141 (443)
Q Consensus 66 ~~l~~~L~kl~~g----~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~ 141 (443)
|+++++|+++.+| ++||++||+++|+.|| +|+++|+|+||||++||+||||+|||+||++||+++..++
T Consensus 1 ~~~~~~i~~l~~G~~~~~~Lt~eEA~~~~~~il-------~g~~~~~qi~AfL~alr~KgET~eElaG~~~a~~~~~~~~ 73 (317)
T PRK08136 1 MDYAKIIKEIGRGKNGARDLDRDTARALYGAML-------DGRVPDLELGAILIALRIKGESEAEMLGFLDAMQAHTIPL 73 (317)
T ss_pred CCHHHHHHHHHCCCCCCCCcCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcC
Confidence 6789999999999 8999999999999999 9999999999999999999999999999999999998877
Q ss_pred CCCC-C-CCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHH
Q 013432 142 PVAD-V-KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLE 219 (443)
Q Consensus 142 ~~~~-~-~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le 219 (443)
+.+. . ..+||||||||++ |+|+||+ +|+|+|++|+||+|||||++|||+|| +||||+|||+++++|++++++|+
T Consensus 74 ~~~~~~~~~iD~~gtgGd~~-t~nist~-aA~vlA~~G~~V~kHGnr~vssk~gs--advleaLGi~~~~~~~~~~~~l~ 149 (317)
T PRK08136 74 TPPAGRPMPVVIPSYNGARK-QANLTPL-LALLLAREGVPVLVHGVSEDPTRVTS--AEIFEALGIPPTLHADQAQAKLA 149 (317)
T ss_pred CCCCCCCceEEeCCCCCCCC-CcChHHH-HHHHHHHCCCeEEEECCCCCCCcccH--HHHHHHcCCCCCCCHHHHHHHHH
Confidence 5432 2 3699999999975 9999998 99999999999999999999999999 99999999999999999999999
Q ss_pred hcCceeEEeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhc--cCCCeEEEeecCCCchHHHHHHHHHcCCceEE
Q 013432 220 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--QGREAIVAGFYHEGYEEPLLMLMKRRGVHSGL 297 (443)
Q Consensus 220 ~~g~gf~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp--~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~al 297 (443)
+ .||+|+++|.|||+|++++++|++||+||++|+..++ +|| +++++||+|||||+|.++|+++++.+|. +++
T Consensus 150 ~--~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL---~NP~~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~-~al 223 (317)
T PRK08136 150 E--GQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKL---ATPFAEGAALRLSSYTHPEYRDRLAEFFSDIGA-RAL 223 (317)
T ss_pred h--cCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCccccCCCeEEEeeeChHHHHHHHHHHHHcCC-CEE
Confidence 9 7788888999999999999999999999999988875 788 5889999999999999999999999998 999
Q ss_pred EEecCCCccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCC-cCCCHHHHH
Q 013432 298 VVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPR-ADRSVSKNI 375 (443)
Q Consensus 298 Vv~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~-~~~~~~~na 375 (443)
||||.||+||+++.+ +|++++ .+|++. +.++|++||++.++ +. .++|+++|+
T Consensus 224 vv~G~~G~dE~s~~~---------------------~t~v~~~~~g~~~----~~~~p~~~g~~~~~-~~~~~~~~~~na 277 (317)
T PRK08136 224 LMRGTEGEVYANPRR---------------------CPQIDWIHDGGCR----VLVERQSGSADEPP-ELPAAKDAATTA 277 (317)
T ss_pred EEEcCCCceeecCCC---------------------CceEEEEeCCEEE----EEECHHHcCCccCc-hhccCCCHHHHH
Confidence 999999999998654 255554 466552 78999999999887 44 378999999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 013432 376 ELGLAALRGEKGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMD 417 (443)
Q Consensus 376 ~~~~~iL~G~~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~ 417 (443)
++++++|+|+ ++.+|.|++|||++||++| +++|+++|++
T Consensus 278 ~~~~~vL~G~-~~~~d~v~lNaa~~l~~~g--~~~~~~~g~~ 316 (317)
T PRK08136 278 AWIERVLAGE-VPVPESIARQVACCLVAAG--EAATIEDGLA 316 (317)
T ss_pred HHHHHHHCCC-CCcchHHHHHHHHHHHHcC--ccCCHHHhhc
Confidence 9999999995 5677999999999999985 8999999975
No 9
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=5.4e-72 Score=561.00 Aligned_cols=308 Identities=23% Similarity=0.308 Sum_probs=277.9
Q ss_pred ccHHHHHHHHhcCC----CCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC
Q 013432 66 MRLVGALREVLAGG----HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPP 141 (443)
Q Consensus 66 ~~l~~~L~kl~~g~----~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~ 141 (443)
|+|+.||+++.+|+ +||++||+++|+.|| +|+++|.|+||||++||+||||+|||+||++||++++.++
T Consensus 2 ~~~~~~ik~vg~gk~~~~~Lt~eEa~~~~~~il-------~g~~~~~q~aAfL~alr~kgeT~eEi~g~~~a~r~~~~~~ 74 (323)
T PRK09071 2 HPFAEYIRILGKGKRGRRSLTREEARQAMGMIL-------DGEVEDDQLGAFLMLLRVKEETAEELAGFVEAIRERLQAP 74 (323)
T ss_pred CcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 46999999999998 999999999999999 9999999999999999999999999999999999998776
Q ss_pred CCCCCCCceE-EcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCC-CcHHHHHHhCCCCCCCCHHHHHHHHH
Q 013432 142 PVADVKSLTH-YGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGG-VTEEQMLKFMGASTNLSVLQAKELLE 219 (443)
Q Consensus 142 ~~~~~~~vD~-~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~G-s~~aDvLeaLGi~i~~s~~~~~~~Le 219 (443)
+.+ ..+|| ||||+|+..++| |+ +|+++|++|+||+|||||++||++| | +|+||+|||+++++++++.++|+
T Consensus 75 ~~~--~~iD~~~gtG~d~~~~~~--~~-~a~vlA~~G~~V~kHGnr~~ssk~g~s--aDvLeaLGv~~~~~~~~~~~~l~ 147 (323)
T PRK09071 75 PLA--VDLDWPSYAGKRRHLPWY--LL-AAKLLAQNGYRVLLHGGGGHTAGRLYT--EQLLEALGIPIARSWQEAEQALE 147 (323)
T ss_pred CCC--CceecCCcCCCCCCcccH--HH-HHHHHHHCCCeEEEECCCCCCCCcccH--HHHHHHCCCCCCCCHHHHHHHHH
Confidence 532 35899 999999888887 44 9999999999999999999999997 7 99999999999999999999999
Q ss_pred hcCceeEEeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEE
Q 013432 220 DEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVV 299 (443)
Q Consensus 220 ~~g~gf~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv 299 (443)
+ .||+|+++|.|||+|++++++|++||+||++|+..++ +||+++++||+|||||+|.++|+++++.+|.++++||
T Consensus 148 ~--~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL---~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~alvv 222 (323)
T PRK09071 148 E--HNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARL---LNPLNAKASLQGIFHPGYQQLHREAARLLGDQNALVF 222 (323)
T ss_pred h--cCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHH---cCcCCCCceEEeeEChhHHHHHHHHHHHcCCCeEEEE
Confidence 9 7788888999999999999999999999999888765 7899999999999999999999999999999999999
Q ss_pred ecCCCccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCcCCCHHHHHHHH
Q 013432 300 KGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRADRSVSKNIELG 378 (443)
Q Consensus 300 ~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~~na~~~ 378 (443)
||.||+||+++.+ +|.+++ .+|++.+ |+|+ +||++.+++ ++++|++++
T Consensus 223 ~G~~G~dE~s~~~---------------------~t~v~~~~~g~i~~---~~~~--~~g~~~~~~-----~~~~na~~~ 271 (323)
T PRK09071 223 KGEGGESERNPDV---------------------STTLYGSRNGEAWD---EEWP--ALSEERHVK-----PEELDPEQL 271 (323)
T ss_pred ECCCCceeecCCC---------------------ceEEEEEcCCeEEE---EEec--ccccccCCC-----CcccCHHHH
Confidence 9999999998654 355655 4676654 7774 499876643 789999999
Q ss_pred HHHhCCCC-CC-hHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHch
Q 013432 379 LAALRGEK-GP-TYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSG 426 (443)
Q Consensus 379 ~~iL~G~~-~~-~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG 426 (443)
++||+|+. ++ ..|+|++|||++|| +| ++.|++||+++|+++|+++
T Consensus 272 ~~vl~G~~~~~~~~d~v~~Naa~aL~-~g--~~~sl~eg~~~A~~~w~~r 318 (323)
T PRK09071 272 LAVWRGEEEDEYGENAVIATMALALW-RG--LNQSREEAFEKAAQLWATR 318 (323)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHHH-cC--CCCCHHHHHHHHHHHHHHh
Confidence 99999984 33 56999999999999 64 8999999999999999976
No 10
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=2e-60 Score=464.29 Aligned_cols=248 Identities=27% Similarity=0.394 Sum_probs=222.5
Q ss_pred CCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeE
Q 013432 147 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFA 226 (443)
Q Consensus 147 ~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~ 226 (443)
+.||+|||||||.+||||||+ +|+++|++|+||+|||||++|||+|| +|+||+|||++++++++++++|++ .||+
T Consensus 2 ~~~D~~gTGGd~~~t~niSt~-~a~vlAa~G~~V~kHG~r~~~~~~Gs--~dvLe~LGv~~~~~~~~~~~~l~~--~g~~ 76 (252)
T PF00591_consen 2 PVVDICGTGGDGDKTFNISTA-AAIVLAAAGVPVAKHGNRGVTSKSGS--ADVLEALGVPIDLSPEEAQAQLEE--TGIA 76 (252)
T ss_dssp TEEEEEESSCSSSTBHHHHHH-HHHHHHHTTSEEEEEEESGCTTSSSH--HHHHHHSTB-TT--HHHHHHHHHH--HSEE
T ss_pred CceEEecCCCCCCCceehHHH-HHHHHHccCCcEecccCCCccccccH--HHHHHhcCCCcCCCHHHHHHHhhc--cCeE
Confidence 468999999999999999998 99999999999999999999999998 899999999999999999999999 7788
Q ss_pred EeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCCcc
Q 013432 227 YVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGAL 306 (443)
Q Consensus 227 fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG~~ 306 (443)
|+++|.|||+|++++++|++||+||++++.+++ +||+++++||+|||||+|.+.++++++.+|+++++|||| ||++
T Consensus 77 fl~~~~~~p~~~~l~~~R~~lg~rT~~N~l~pL---~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G-~G~d 152 (252)
T PF00591_consen 77 FLFAPNFHPALKRLAPVRRELGIRTVFNTLGPL---LNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKG-EGSD 152 (252)
T ss_dssp EEEHHHHSGGHHHHHHHHHHHTS--SHHHHGHH---HHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEE-TTBS
T ss_pred EecchhcCcchHHHHHHHHHcCCCCHHHhhhhh---cCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEec-CCcc
Confidence 899999999999999999999999999998775 789999999999999999999999999999999999999 9999
Q ss_pred ccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHHhCC
Q 013432 307 SMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRG 384 (443)
Q Consensus 307 e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~iL~G 384 (443)
|+++.. +|.+++ .+|++. ++.|+|++||+++.+.+++ .+++++|+++++++|+|
T Consensus 153 E~~~~~---------------------~t~v~~~~~g~~~---~~~l~p~d~gl~~~~~~~l~~~~~~e~~~~~~~~L~G 208 (252)
T PF00591_consen 153 EISPLG---------------------PTRVYELKNGEIT---EYELDPEDFGLKRAPLEELEGGDPEENARILRAVLAG 208 (252)
T ss_dssp SHHHSS---------------------HEEEEEHHTTEEE---EEEEEEGCCTSSSEEGGGGBHSSHHHHHHHHHHHHTT
T ss_pred hhhhcc---------------------CcEEEeecCCcee---EEecCHhhcCCCCCChHHhcCCCHHHHHHHHHhhhcC
Confidence 998653 355554 477665 4999999999999888776 57999999999999999
Q ss_pred CCCCh-HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHH
Q 013432 385 EKGPT-YDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKAL 429 (443)
Q Consensus 385 ~~~~~-~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~ 429 (443)
+..+. +|.|++|||++||++| +++|++||+++|+++|+||+|+
T Consensus 209 ~~~~~~~d~v~~nAa~~L~~~g--~~~s~~eg~~~a~e~i~sG~Al 252 (252)
T PF00591_consen 209 EEDPAHRDAVLLNAAAALYVAG--KASSLEEGVEKAREAIDSGKAL 252 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCCC
Confidence 97665 9999999999999985 7999999999999999999996
No 11
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=2.3e-57 Score=466.79 Aligned_cols=294 Identities=19% Similarity=0.225 Sum_probs=261.4
Q ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCC
Q 013432 66 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 145 (443)
Q Consensus 66 ~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~ 145 (443)
|++.++|+++.+|++||++|++++|+.|+ +|+++|.|++|||+++++||||.+|+++|++||++++.++++++
T Consensus 1 m~~~~iI~k~~~g~~Lt~eE~~~~~~~i~-------~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~aM~~sg~~~~~~~ 73 (434)
T PRK06078 1 MRMVDLIQKKRDGKELTTEEINFFIEGYT-------NGTIPDYQMSALAMAIYFKDMTDRERADLTMAMVNSGDTIDLSA 73 (434)
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcc
Confidence 56789999999999999999999999999 99999999999999999999999999999999999999887753
Q ss_pred --CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhcC
Q 013432 146 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 222 (443)
Q Consensus 146 --~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaL-Gi~i~~s~~~~~~~Le~~g 222 (443)
.+.+|+|||||||.+|||+ +|+++|+||++|+|||||++||++|| +|+||+| |++++++++++.++|++
T Consensus 74 ~~~~~vD~~gTGGdG~kt~ni----~a~ivAA~Gv~VaKhgnR~lss~~GT--aD~LE~lpG~~~~ls~e~~~~~l~~-- 145 (434)
T PRK06078 74 IEGIKVDKHSTGGVGDTTTLV----LAPLVAAFGVPVAKMSGRGLGHTGGT--IDKLESIKGFHVEISQEDFIKLVNE-- 145 (434)
T ss_pred cCCCeeEecCCCCCCCCchHH----HHHHHHcCCCCeeeeCCCCcCCCcch--HHHHHhCCCCCCCCCHHHHHHHHHH--
Confidence 2379999999999999995 89999999999999999999999999 9999999 99999999999999999
Q ss_pred ceeEEec-cchhcHHhHHHHhhhcccCCCC--CCCCchhhhhhhhc--------cCCCeEEEeec--------CCCchHH
Q 013432 223 IGFAYVS-LREARPSLYSLIGLREHIKKRP--PVATSEKVQQFVRA--------QGREAIVAGFY--------HEGYEEP 283 (443)
Q Consensus 223 ~gf~fl~-a~~~~Pa~~~l~~vR~~Lg~Rt--PL~np~~~~~~lnp--------~~~~~~v~GV~--------h~~~~~~ 283 (443)
.||+|++ +|.|||+|++++++|+.++.-. || +|| .+++++|+||+ +++..+.
T Consensus 146 ~G~~fl~~a~~~~PAdk~v~~lR~v~~t~n~lPL---------i~~SImSKKlAag~~~~vldV~~G~gAfm~~~~~a~~ 216 (434)
T PRK06078 146 NKVAVIGQSGNLTPADKKLYALRDVTATVNSIPL---------IASSIMSKKIAAGADAIVLDVKTGAGAFMKTVEDAEE 216 (434)
T ss_pred hCcEEEccCCCcChhhhhhHHHhccccccChHHh---------hhhHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHH
Confidence 6677788 5999999999999999999533 44 455 67789999999 9999999
Q ss_pred HHHHHHHcCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCC
Q 013432 284 LLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPT 362 (443)
Q Consensus 284 ~a~~l~~lG~~~alVv~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~ 362 (443)
+|++|..+|.+ .| + +.+++ .|+ |++||+
T Consensus 217 lA~~l~~lG~~-----~g-----------~---------------------~~~a~lt~~-----------~~plG~--- 245 (434)
T PRK06078 217 LAHAMVRIGNN-----VG-----------R---------------------NTMAVISDM-----------SQPLGR--- 245 (434)
T ss_pred HHHHHHHHHHh-----cC-----------C---------------------eEEEEECCC-----------Cccccc---
Confidence 99999999964 12 0 11111 122 566776
Q ss_pred CCCCcCCCHHHHHHHHHHHhCCC-CCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 363 NTPRADRSVSKNIELGLAALRGE-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 363 ~~~~~~~~~~~na~~~~~iL~G~-~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
..+++.++++. +++|+|+ +++.+|.|++||+.+|+++| ++.++++|+++|+++|+||+|+++|++|+++|+.
T Consensus 246 ----~iGna~Ev~Ea-~~vL~G~~~~~~~d~v~~~A~~~L~~~g--~~~~~~eg~~~a~e~l~sGkAl~kf~~~v~aqGg 318 (434)
T PRK06078 246 ----AIGNALEVLEA-IDTLQGKGPKDLTELVLTLGSQMVVLAG--KAKTLEEAREHLIEVMNNGKALEKFKEFLSAQGG 318 (434)
T ss_pred ----cCCCHHHHHHH-HHHHCCCCcccHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhccHHHHHHHHHHHHhCC
Confidence 24788999887 9999998 45899999999999999986 7899999999999999999999999999999975
No 12
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-57 Score=431.78 Aligned_cols=295 Identities=20% Similarity=0.238 Sum_probs=257.3
Q ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHhcC----CCCCC-----C-C-CCCceEEcCCCCCCCccccchHHHHHHHhc
Q 013432 109 LLSAFLIGQRMNR--ETDRELKAYCLAFDDEL----GPPPV-----A-D-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSC 175 (443)
Q Consensus 109 qigAfL~alr~Kg--eT~eElag~~~A~~~~~----~~~~~-----~-~-~~~vD~~GtggDG~~t~nisT~l~A~vlAa 175 (443)
+...||++||... +++|-|.-..+|+..+. .|++. + + ++.+|||||||||.||||+||. +|+|+|+
T Consensus 52 ~~~sfl~~L~~Tkae~~~e~l~ea~~al~s~s~~~~~pla~~~m~hpr~~~~~vDIVGTGGDG~NTfNvST~-saIvAag 130 (373)
T KOG1438|consen 52 ETLSFLVDLSETKAESSLEFLLEANEALISASLVLLVPLARAMMKHPRKVEDAVDIVGTGGDGANTFNVSTG-SAIVAAG 130 (373)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhccccchhhhhCcccCCceeEEeccCCCCcceeeecch-HHHHHhc
Confidence 4489999998755 46777777888887765 23221 1 1 2379999999999999999999 9999999
Q ss_pred CCCeEEeecCCCCCCCCCCcHHHHHHhCCCC-CCCCHHHHHHHHHhcCceeEEeccchhcHHhHHHHhhhcccCCCC---
Q 013432 176 YGESCLLHGAEWMPPKGGVTEEQMLKFMGAS-TNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRP--- 251 (443)
Q Consensus 176 ~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~-i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa~~~l~~vR~~Lg~Rt--- 251 (443)
||.+|+||||++.||.||| +|+|++||++ ++.+|+.+.+++++ .+|.|+.+|-|||+|+++.++||+||++|
T Consensus 131 ~GlkvcKhGnkaStSasGs--aDll~~lGCd~l~v~p~~i~~~~e~--~~f~Fl~aPm~Hp~mk~V~piRK~LgipTvFN 206 (373)
T KOG1438|consen 131 CGLKVCKHGNKASTSASGS--ADLLEALGCDVLDVGPEGIKRCVEE--GGFGFLMAPMYHPAMKIVGPIRKKLGIPTVFN 206 (373)
T ss_pred ccchhhhcCCccccccCcc--HHHHHhcCceeeccCCccccccccc--CceeEEechhhcccccchhHHHHhcCCccHHH
Confidence 9999999999999999999 9999999987 78999999999999 67777889999999999999999999999
Q ss_pred ---CCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCCccccccccccccccCCCCcccccc
Q 013432 252 ---PVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSG 328 (443)
Q Consensus 252 ---PL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG~~e~s~~~~~~~~~~~~~~~~~~~ 328 (443)
||.||+++ .+.|+||||+++..+||++++++|..+-++|+|..|+||+||.+
T Consensus 207 ilGPlLnP~~v---------~~rivGVy~k~L~~~~AKal~~~g~gs~~~V~g~~GLDE~SP~G---------------- 261 (373)
T KOG1438|consen 207 ILGPLLNPARV---------SYRIVGVYHKDLVVKMAKALQRFGMGSRALVVGSCGLDEMSPLG---------------- 261 (373)
T ss_pred hcccccCcchh---------hhheeeeeHHHHHHHHHHHHHHhCCCceEEEEeccCccccCCCC----------------
Confidence 77777664 58999999999999999999999999889999999999999765
Q ss_pred ccccCcceeEec-CCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHHhCCCC---CChHHHHHHHHHHHHHH
Q 013432 329 FRSLNVESTFEG-DGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRGEK---GPTYDRIVLNAGMVDHL 403 (443)
Q Consensus 329 ~r~~~~t~v~~~-~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~iL~G~~---~~~~d~v~lNAa~aL~~ 403 (443)
+|++|.. ++++. ..+|.++|.+||+++++++++ ++.|.+||-.++++|+|+- .|++|.+++|+|++|++
T Consensus 262 -----~t~vw~v~~se~k-~e~f~~~P~~Fgl~~h~Ls~~asggP~~NAilleevLSg~~hagdPI~Dy~lmNtAall~v 335 (373)
T KOG1438|consen 262 -----GTLVWDVTPSEEK-IEEFSFDPLDFGLPRHTLSDLASGGPDYNAILLEEVLSGESHAGDPIADYLLMNTAALLLV 335 (373)
T ss_pred -----CceEEEecCCcee-eeeeecCHhhcCCCcCchhhhccCCCCccHHHHHHHhcCcccCCChHHHHHHHHHHHHHHH
Confidence 3666654 43322 235999999999999999986 7899999999999999983 47999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 404 LGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 404 ~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
++ .+.+++||+..|+|.|.||+|++.|+.|+..++.
T Consensus 336 s~--~~q~l~EGv~~A~esisSG~Alr~L~~fi~~~s~ 371 (373)
T KOG1438|consen 336 SN--RVQTLAEGVTVARESISSGKALRTLDSFINISSL 371 (373)
T ss_pred hh--hhhHHHhhhHHHHHhhcchHHHHHHHHHHhhhhc
Confidence 86 7999999999999999999999999999977653
No 13
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=100.00 E-value=8.4e-53 Score=430.22 Aligned_cols=298 Identities=19% Similarity=0.188 Sum_probs=254.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCC--C
Q 013432 69 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD--V 146 (443)
Q Consensus 69 ~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~--~ 146 (443)
.++|+++.+|++||++|++++|+.|+ +|+++|.|++||||++|+||||+||+++|++||++++.+++++. .
T Consensus 2 ~~~i~kk~~g~~Lt~eE~~~~~~~i~-------~G~~~d~QiaAfLmAl~~kGeT~eEi~g~t~Am~~~~~~l~~~~~~~ 74 (405)
T TIGR02644 2 VDIIRKKRDGKKLSDEEINFFINGYT-------NGEIPDYQMSALLMAIYFNGMTDEETAYLTKAMIDSGEVLDLSSLPG 74 (405)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcccCC
Confidence 57899999999999999999999999 99999999999999999999999999999999999998887754 3
Q ss_pred CCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCC-CCCCCCHHHHHHHHHhcCcee
Q 013432 147 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMG-ASTNLSVLQAKELLEDEEIGF 225 (443)
Q Consensus 147 ~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLG-i~i~~s~~~~~~~Le~~g~gf 225 (443)
+.+|+|||||||.+ +||+ +|+++|+||+||+|||||+++|++|| +|+||+|| ++++++++++.+++++ .||
T Consensus 75 ~~vD~~gTGGdG~~---iSt~-~a~ivAa~Gv~VaKhgnR~lss~~GT--aD~LE~lgG~~v~ls~e~~~~~l~~--~G~ 146 (405)
T TIGR02644 75 PKVDKHSTGGVGDK---VSLV-LGPIVAACGVKVAKMSGRGLGHTGGT--IDKLESIPGFRTELSEAEFIEIVNK--VGL 146 (405)
T ss_pred CeeEEeCCCCCCCC---chHH-HHHHHHhCCCCEEeeCCCCCCCcchH--HHHHHhcCCCCCCCCHHHHHHHHHH--cCe
Confidence 48999999999995 7998 99999999999999999999999999 99999998 9999999999999999 778
Q ss_pred EEeccc-hhcHHhHHHHhhhcccCCCC--CCCCchhhhhhhhccCCCeEEEee--------cCCCchHHHHHHHHHcCCc
Q 013432 226 AYVSLR-EARPSLYSLIGLREHIKKRP--PVATSEKVQQFVRAQGREAIVAGF--------YHEGYEEPLLMLMKRRGVH 294 (443)
Q Consensus 226 ~fl~a~-~~~Pa~~~l~~vR~~Lg~Rt--PL~np~~~~~~lnp~~~~~~v~GV--------~h~~~~~~~a~~l~~lG~~ 294 (443)
+|++++ .+||++++++++|++++.-. ||.+|.-+.+-+ ..+++++|++| ++.+....+|+.+..+|.+
T Consensus 147 ~fl~~~~~l~PAdk~l~~lRd~~~Tv~sipLi~aSimSKK~-A~G~~~~vlDVk~G~gAfm~~~e~a~~LA~~~~~~g~~ 225 (405)
T TIGR02644 147 AIIGQTKDLAPADKKLYALRDVTGTVDSIPLIASSIMSKKL-AAGADAIVLDVKVGSGAFMKTLEDAKELAKLMVEIGKG 225 (405)
T ss_pred EEecCccccCcchhHHHHHhhcccccCcHHHHHHHHHHHHH-hcCCCeEEEeecccCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 889999 99999999999999999332 787776432211 23578999999 9999999999999988854
Q ss_pred eEE--EEecCCCccccccccccccccCCCCccccccccccCcceeEecCCcEEeeeeEEEecCCCCCCCCCCCCcCCCHH
Q 013432 295 SGL--VVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNTPRADRSVS 372 (443)
Q Consensus 295 ~al--Vv~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~ 372 (443)
..+ ++.. .+++++ +|.. .+++.
T Consensus 226 ~g~~~~a~~-t~md~p------------------------------------------------lG~~-------iGnal 249 (405)
T TIGR02644 226 AGRKTSALL-TDMNQP------------------------------------------------LGRA-------IGNAL 249 (405)
T ss_pred cCCeEEEEe-cCCCcc------------------------------------------------ccCC-------CCChh
Confidence 333 2222 122221 2211 12333
Q ss_pred HHHHHHHHHhCCC-CCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 373 KNIELGLAALRGE-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 373 ~na~~~~~iL~G~-~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
| .+...++|+|+ +.+.+|.++.||+.+|++.| ++.+.++|+++|+++|+||+|+++|++|+++|+.
T Consensus 250 E-v~Eai~~L~g~~p~dl~e~~~~la~~~L~~~g--~a~~~~~g~~~a~~~l~sG~Al~kf~~~v~aQGG 316 (405)
T TIGR02644 250 E-VKEAVEFLKGEGPADLKELTLALAAEMLLLAG--IAKTEKEARALAEDVLESGKALEKFRRFVEAQGG 316 (405)
T ss_pred h-HHHHHHHHCCCCcHHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCC
Confidence 3 33348899997 56799999999999999975 7899999999999999999999999999999975
No 14
>PRK04350 thymidine phosphorylase; Provisional
Probab=100.00 E-value=1.1e-50 Score=421.17 Aligned_cols=292 Identities=21% Similarity=0.213 Sum_probs=249.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 013432 70 GALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSL 149 (443)
Q Consensus 70 ~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~~~v 149 (443)
++|+++.+|++||++|++++|+.|+ +|+++|.|++|||+|+++||||.+|++++++||++++.+++++..+.+
T Consensus 83 ~~I~kk~~G~~Ls~eE~~~~i~~i~-------~g~~sd~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~~g~~l~~~~~~~v 155 (490)
T PRK04350 83 SAIRKKIDGEKLDKEEIEAIIRDIV-------AGRYSDIELSAFLTASAINGLDMDEIEALTRAMVETGERLDWDRPPVV 155 (490)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCCCCCeE
Confidence 6899999999999999999999999 999999999999999999999999999999999999999887655689
Q ss_pred eEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEec
Q 013432 150 THYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVS 229 (443)
Q Consensus 150 D~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~ 229 (443)
|+|||||||.+++ |+. +++++|+||++|+|||||++||++|| +|+||+|| +++++++++.++|++ .||||+|
T Consensus 156 DkhgTGGd~g~t~--S~~-~apivAA~Gv~VaKhgnRaiss~sGT--aD~LEaLg-~v~ls~e~~~~~l~~--~G~~flf 227 (490)
T PRK04350 156 DKHSIGGVPGNRT--TLI-VVPIVAAAGLTIPKTSSRAITSPAGT--ADTMEVLA-PVDLSVEEIKRVVEK--VGGCLVW 227 (490)
T ss_pred EecCCCCCCCCCE--eHH-HHHHHHhCCCceeeecCCCCCCCCch--HHHHHHhh-cCCCCHHHHHHHHHH--cCEEEEE
Confidence 9999999988886 555 77888999999999999999999999 99999999 999999999999999 5555565
Q ss_pred --cchhcHHhHHHHhhhcccCCCC-CCCCchhhhhhhh--------------ccCCCeEEEeecCCCchHHHHHHHHHcC
Q 013432 230 --LREARPSLYSLIGLREHIKKRP-PVATSEKVQQFVR--------------AQGREAIVAGFYHEGYEEPLLMLMKRRG 292 (443)
Q Consensus 230 --a~~~~Pa~~~l~~vR~~Lg~Rt-PL~np~~~~~~ln--------------p~~~~~~v~GV~h~~~~~~~a~~l~~lG 292 (443)
+|+|||+|++++++|+.++++| |+... - .+| |++...+ |++.+..+.+++.+..+|
T Consensus 228 G~a~~l~PAdk~l~~vR~~l~vds~~li~a-S---ImSKKlA~G~~~lvlDVp~G~ga~---v~~~~~A~~LA~~~~~vg 300 (490)
T PRK04350 228 GGAVNLSPADDILIRVERPLSIDPRGQLVA-S---ILSKKIAAGSTHVVIDIPVGPTAK---VRSVEEARRLARLFEEVG 300 (490)
T ss_pred CCccccCHHHHHHHHHhhhcCCCcHHHHHH-H---HhhhHhhcCCCceEEecccCCCCc---CCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999 44322 1 255 6666666 789999999999999888
Q ss_pred CceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEecCCcEEeeeeEEEecCCCCCCCCCCCCcCCCHH
Q 013432 293 VHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEPTNTPRADRSVS 372 (443)
Q Consensus 293 ~~~alVv~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~ 372 (443)
.+..+.+ +.. .-|+.. |-.+ +-.+.
T Consensus 301 ~~~g~~v-------~a~-----------------------------lTd~~q---------PlG~----------~iGna 325 (490)
T PRK04350 301 DRLGLRV-------ECA-----------------------------ITDGSQ---------PIGR----------GIGPA 325 (490)
T ss_pred HhcCCeE-------EEE-----------------------------ECCCCe---------ehhc----------cCCch
Confidence 6555544 111 112211 1111 22478
Q ss_pred HHHHHHHHHhCCC---CCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 373 KNIELGLAALRGE---KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 373 ~na~~~~~iL~G~---~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
.+++...++|+|+ +.+.++.++.||+.+|++.| .+ +.++|+++|+++|+||+|++||++|+++|+.
T Consensus 326 lEv~e~l~vL~g~~~gp~dl~e~~l~lA~~~L~~~g--~~-~~~~g~~~a~~~L~sG~Al~kf~~ii~aQGG 394 (490)
T PRK04350 326 LEARDVLAVLENDPDAPNDLREKSLRLAGILLEMGG--VA-PGGEGYALAREILESGKALEKFQEIIEAQGG 394 (490)
T ss_pred HHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhCcHHHHHHHHHHHHcCC
Confidence 8899999999994 45689999999999999875 44 9999999999999999999999999999975
No 15
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=100.00 E-value=1.4e-46 Score=387.62 Aligned_cols=301 Identities=21% Similarity=0.196 Sum_probs=234.6
Q ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCC-
Q 013432 66 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA- 144 (443)
Q Consensus 66 ~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~- 144 (443)
|+++++|+++.+|++||++|++++|+.|+ +|+++|.|++|||+++|+||||+||+++|++||+++..+++++
T Consensus 2 m~~~~~I~kk~~g~~Lt~eE~~~~~~~i~-------~G~~~d~QiaAfLmAl~~kG~t~eEi~~lt~Am~~sg~~i~~~~ 74 (440)
T PRK05820 2 FLAQEIIRKKRDGGALSDEEIDWFIDGYT-------DGTVSDGQIAALAMAIFFNGMTRPERVALTLAMRDSGEVLDWSS 74 (440)
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcc
Confidence 67899999999999999999999999999 9999999999999999999999999999999999999888664
Q ss_pred ---CCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHh
Q 013432 145 ---DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLED 220 (443)
Q Consensus 145 ---~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaL-Gi~i~~s~~~~~~~Le~ 220 (443)
+.+.+|+|||||||+ |+||+ +|+++|++|++|+|||||+++|++|| +|+||+| |++++++++++.++|++
T Consensus 75 ~d~~~~~vDkhgTGGdG~---niS~~-~a~ivAa~Gv~VaKhg~R~lss~~GT--aD~LE~LpG~~v~ls~e~~~~~l~~ 148 (440)
T PRK05820 75 LNLNGPIVDKHSTGGVGD---KISLM-LAPMVAACGGYVPMISGRGLGHTGGT--LDKLEAIPGYRAFPSNDRFREILKD 148 (440)
T ss_pred ccCCCCeEEEcCCCCCCc---cHHHH-HHHHHHhCCCCEEeeCCCCCCCcccH--HHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 235799999999998 78998 99999999999999999999999999 9999999 99999999999999999
Q ss_pred cCceeEEeccc-hhcHHhHHHHhhhcccCCCC--CCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEE
Q 013432 221 EEIGFAYVSLR-EARPSLYSLIGLREHIKKRP--PVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGL 297 (443)
Q Consensus 221 ~g~gf~fl~a~-~~~Pa~~~l~~vR~~Lg~Rt--PL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~al 297 (443)
.||+|++++ .|||++++++++|+.++.-. ||... +|-+ +++| .|.++.+
T Consensus 149 --~G~~~~~~~~~l~PAdk~l~~lRdvt~tvds~pli~a-----------------SImS----KK~A-----~G~~~lv 200 (440)
T PRK05820 149 --VGVAIIGQTSDLAPADKRLYALRDVTATVESIPLITA-----------------SILS----KKLA-----EGLDALV 200 (440)
T ss_pred --cCeEEEcCchhcChHHHHHHHHhcccCCCChHHHHHH-----------------HHHH----HHHH-----cCCCeEE
Confidence 678889898 99999999999999887554 44322 2222 2233 3765443
Q ss_pred E-Ee-cCCCccccccccccccccCCCCccccccccccCcceeEecCCcEEeeeeEEEecCCCCCCC--------CCCCCc
Q 013432 298 V-VK-GEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEP--------TNTPRA 367 (443)
Q Consensus 298 V-v~-G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~~~g~~~~~~~~~i~P~d~Gl~~--------~~~~~~ 367 (443)
+ |+ | .|..--+ ..+.|.+..+.+.. .+.||++. .|+...
T Consensus 201 lDVk~G-~gAfmkt----------------~~~A~~La~~mv~i--------------g~~~g~~~~a~lTdm~qPlG~~ 249 (440)
T PRK05820 201 LDVKVG-SGAFMKT----------------YEEARELARSMVEV--------------ANGAGVRTTALLTDMNQPLASS 249 (440)
T ss_pred EEcCCC-CCCCCCC----------------HHHHHHHHHHHHHH--------------HHHcCCeEEEEEccCCCcccCc
Confidence 3 55 5 3542100 00011111111111 11222221 122221
Q ss_pred CCCHHHHHHHHHHHhCCC--CCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 368 DRSVSKNIELGLAALRGE--KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 368 ~~~~~~na~~~~~iL~G~--~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
..+...+....++|+|+ +.+..+.++.-|+.+|++.| .+.+.++|.++++++|+||+|++||++|+++|+.
T Consensus 250 -iGnalEv~Eai~~L~g~~gp~dl~e~~~~la~~ml~~~g--~~~~~~~g~~~~~~~l~sG~Al~kF~~~v~aQGG 322 (440)
T PRK05820 250 -AGNALEVREAVEFLTGGYRPPRLVEVTMALAAEMLVLAG--LAKDEAEARADLAAVLDSGKAAERFGRMVAAQGG 322 (440)
T ss_pred -cchHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 23344455578999997 34566666666888888875 7889999999999999999999999999999975
No 16
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=100.00 E-value=1.3e-44 Score=371.39 Aligned_cols=306 Identities=18% Similarity=0.177 Sum_probs=235.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCC--C
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA--D 145 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~--~ 145 (443)
+.++|+++.+|++||++|++++|+.++ +|+++|.|++|||+|+++||||.+|+++|++||++++.+++++ +
T Consensus 3 ~~~~I~kk~~G~~Lt~eE~~~~i~~i~-------~g~i~d~QiaAfLmAl~~kG~t~~Ei~~lt~aM~~sg~~i~~~~~~ 75 (437)
T TIGR02643 3 PQEIIRKKRDGHSLSDAEIAQFINGIT-------DGSVSEGQIAAFAMAVFFNGMNRDERVALTLAMRDSGDVLDWRSLD 75 (437)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcccc
Confidence 468999999999999999999999999 9999999999999999999999999999999999999988775 2
Q ss_pred --CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhcC
Q 013432 146 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 222 (443)
Q Consensus 146 --~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaL-Gi~i~~s~~~~~~~Le~~g 222 (443)
.+.+|+|||||||. |+||+ +|+++|+||++|+|||||++||++|| +|+||+| |++++++++++.++|++
T Consensus 76 ~~~~~vDkhgTGGdG~---niSt~-~apivAA~Gv~VaKhgnR~iss~~GT--aD~LEalpG~~v~ls~e~~~~~l~~-- 147 (437)
T TIGR02643 76 LNGPVVDKHSTGGVGD---VVSLM-LGPIVAACGGYVPMISGRGLGHTGGT--LDKLEAIPGYDIFPDPALFRRVVKD-- 147 (437)
T ss_pred cCCCeeEecCCCCCCc---chhHH-HHHHHHhCCCCeeeecCCCcCCCCch--HHHHHhCCCCCCCCCHHHHHHHHHH--
Confidence 35899999999998 68998 99999999999999999999999999 9999999 99999999999999999
Q ss_pred ceeEEec-cchhcHHhHHHHhhhcccCCCC--CCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEE-
Q 013432 223 IGFAYVS-LREARPSLYSLIGLREHIKKRP--PVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLV- 298 (443)
Q Consensus 223 ~gf~fl~-a~~~~Pa~~~l~~vR~~Lg~Rt--PL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alV- 298 (443)
.||+|+. ++.+||+++.++++|...+.-. ||... +|.+ .++|. |.++.++
T Consensus 148 ~g~~f~gqa~~l~PADk~ly~lRDvt~tVds~pLi~a-----------------SImS----KKlA~-----g~d~ivlD 201 (437)
T TIGR02643 148 VGVAIIGQTADLAPADKRFYATRDVTATVESIPLITA-----------------SILS----KKLAA-----GLDALVMD 201 (437)
T ss_pred cCceEEccCCCcCcchhceeeeeeecCCCCcHHHHHH-----------------HHHH----HHHHc-----CCCeEEEE
Confidence 5677786 7999999999999997666443 45432 2222 23443 7655444
Q ss_pred EecCCCccccccccccccccCCCCccccccccccCcceeEe--cCCcEEeeeeEEEecCCCCCCCCCCCCcCCCHHHHHH
Q 013432 299 VKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE--GDGVSRQSFNLEVNASNYGFEPTNTPRADRSVSKNIE 376 (443)
Q Consensus 299 v~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~--~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~~na~ 376 (443)
|+=-.|..--+ ..+.|.+..+.+.. .-|.... ..+ .|. ..|+....+++ ..+.
T Consensus 202 Vk~G~gAfmk~----------------~~~A~~LA~~mv~ig~~~g~~~~---a~i--Tdm---~qPlG~~iGna-lEv~ 256 (437)
T TIGR02643 202 VKVGNGAFMPT----------------YEESEELARSLVDVANGAGVRTT---ALI--TDM---NQPLASAAGNA-VEVR 256 (437)
T ss_pred cCcCCCCcCCC----------------HHHHHHHHHHHHHHHHHcCCeEE---EEE--CCC---CCccccccCcH-HHHH
Confidence 66224642110 00011111122211 1111110 111 111 11232212333 3445
Q ss_pred HHHHHhCCC--CCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 377 LGLAALRGE--KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 377 ~~~~iL~G~--~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
...++|+|+ +.+..+.++.-|+.+|.+.| ++.+.++|.+++++.|+||+|++||++|+++|+.
T Consensus 257 Eai~~L~g~~gp~dl~e~~~~la~~ml~~~g--~~~~~~~~~~~~~~~l~sG~Al~kF~~~v~aQGG 321 (437)
T TIGR02643 257 NAVDFLTGEKRNPRLEDVTMALAAEMLVSGG--LAADEAEARAKLQAVLDSGRAAERFARMVAALGG 321 (437)
T ss_pred HHHHHHCCCCCCccHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHcCC
Confidence 577899997 46788999999999998875 7889999999999999999999999999999975
No 17
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=100.00 E-value=1.8e-44 Score=374.48 Aligned_cols=303 Identities=19% Similarity=0.191 Sum_probs=234.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCCCC
Q 013432 69 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKS 148 (443)
Q Consensus 69 ~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~~~ 148 (443)
.++|+++.+|++||++|++++|+.|+ +|+++|.|++|||+|+++||||.+|++++++||++++.+++++..+.
T Consensus 87 ~~~I~kk~~G~~Lt~eE~~~ii~~i~-------~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~sg~~l~~~~~~~ 159 (493)
T TIGR02645 87 LRAIRKKIDGAKLDQHEIASIVGDIV-------DERLSDVEISAFLTASAINGMTMDEIEALTIAMADTGEMLEWDREPI 159 (493)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCccCCCCCe
Confidence 36799999999999999999999999 99999999999999999999999999999999999999988765568
Q ss_pred ceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEe
Q 013432 149 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYV 228 (443)
Q Consensus 149 vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl 228 (443)
+|+||||||+.++||++ +++++|+||++|+|||||++||++|| +|+||.|| +++++++++.+++++ .||||+
T Consensus 160 vDkhgTGGd~gnk~ni~---~apIvAA~Gv~VaKhsnRaits~sGT--AD~LE~Lg-~v~ls~e~~~~~ve~--~G~~fl 231 (493)
T TIGR02645 160 MDKHSIGGVPGNKTSLI---VVPIVAAAGLLIPKTSSRAITSAAGT--ADTMEVLT-RVALSAEEIKRIVEK--VGGCLV 231 (493)
T ss_pred EEEeCCCCCCCCCEeHH---HHHHHHhCCCCeeeeCCCCcCCCccH--HHHHHHhc-CCCCCHHHHHHHHHH--CCEEEE
Confidence 99999999999999883 67777999999999999999999999 99999999 999999999999999 555555
Q ss_pred c--cchhcHHhHHHHhhhcccCCCC-CCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEE-Ee-cCC
Q 013432 229 S--LREARPSLYSLIGLREHIKKRP-PVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLV-VK-GEE 303 (443)
Q Consensus 229 ~--a~~~~Pa~~~l~~vR~~Lg~Rt-PL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alV-v~-G~e 303 (443)
+ ++.|||++++++++|+.+++.+ ||... +|.+++ +|. |.++.++ |+ | .
T Consensus 232 ~G~a~~l~PAdk~i~~vR~~l~vds~~li~a-----------------SImSKK----lA~-----G~~~lvlDvk~G-~ 284 (493)
T TIGR02645 232 WGGALNLAPADDVLIRVERPLSIDPRAQMLA-----------------SIMSKK----IAA-----GSTHVLIDIPVG-P 284 (493)
T ss_pred ECCCcccCHHHHHHHHHHhhcCCCcHHHHHH-----------------HHHHHH----Hhc-----CCCeEEEecccc-C
Confidence 5 9999999999999999999988 66543 333332 443 7665554 55 5 3
Q ss_pred CccccccccccccccCCCCccccccccccCcceeEe--cCCcEEeeeeEEEecCCCCCCCCCCCCcCCCHHHHHHHHHHH
Q 013432 304 GALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE--GDGVSRQSFNLEVNASNYGFEPTNTPRADRSVSKNIELGLAA 381 (443)
Q Consensus 304 G~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~--~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~~na~~~~~i 381 (443)
|..--+ ..+.|.+..+.+.. .-|...+ ..+ .|. ..|+.. +-.+.-.++...++
T Consensus 285 gAf~~~----------------~~~A~~La~~~~~vg~~~G~~~~---a~i--Tdm---~qPlG~-~iGnalEv~Eal~~ 339 (493)
T TIGR02645 285 GAKVRS----------------LQEAERLARLFIELGDRLGVRVE---CAI--TYG---SQPIGR-GIGPALEAKEALAV 339 (493)
T ss_pred CCcCCC----------------HHHHHHHHHHHHHHHHHcCCeEE---EEE--CCC---CCcccc-ccCcHHHHHHHHHH
Confidence 431000 00001111111100 1111110 111 111 112222 23455666778899
Q ss_pred hCCC---CCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 382 LRGE---KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 382 L~G~---~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
|+|+ +.+.++.++.-|+.+|.+.| ++. ..+|.++|++.|+||+|++||++|+++|+.
T Consensus 340 L~g~~~~p~dL~e~~~~la~~~L~~~g--~~~-~~~g~~~a~~~l~sG~Al~kf~~ii~aQGG 399 (493)
T TIGR02645 340 LERSPAAPFSLREKSLLLAGILLEMGG--AAP-RGAGKELARELLDSGKALEKMKEIIEAQGG 399 (493)
T ss_pred HCCCCCCCccHHHHHHHHHHHHHHhCC--CCC-hHHHHHHHHHHHhCcHHHHHHHHHHHHcCC
Confidence 9996 45688999999999998865 555 799999999999999999999999999975
No 18
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=100.00 E-value=5.6e-43 Score=363.33 Aligned_cols=306 Identities=15% Similarity=0.153 Sum_probs=232.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVK 147 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~~ 147 (443)
-.++|+++.+|++||++|++++|+.|+ +|+++|.|++|||+|+++||||.+|++++++||++++.+++++..+
T Consensus 87 s~~~I~kk~~G~~Ls~eEi~~ii~~i~-------~g~~~d~QiaAfL~Al~~kG~t~~Eia~lt~AM~~sg~~l~~~~~~ 159 (500)
T TIGR03327 87 SVEYIKKKMDGEKLTKDEIRAIVADIV-------DDKLSDIEISAFVTASYINGMDMDEIEWLTRAMAETGDMLSFDRHP 159 (500)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcccCCCCC
Confidence 457899999999999999999999999 9999999999999999999999999999999999999988876556
Q ss_pred CceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEE
Q 013432 148 SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAY 227 (443)
Q Consensus 148 ~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~f 227 (443)
.+|+|||||||.++||++ +++++|+||++|+|||||++||++|| +|+||+|+ +++++++++.++++++|++|+|
T Consensus 160 vvDkhgTGGd~gnk~nl~---~apIVAA~Gv~VaKhsnRaits~sGT--aD~LEsL~-~v~ls~e~~~~~v~~~G~~fl~ 233 (500)
T TIGR03327 160 IMDKHSIGGVPGNKISLL---VVPIVAAAGLTIPKTSSRAITSAAGT--ADVMEVLA-PVEFSADEIKRIVEKTGGCLVW 233 (500)
T ss_pred eEEEeCCCCCCCCCEEHH---HHHHHHhCCCCeeeeCCCCcCCCccH--HHHHHHhh-CCCCCHHHHHHHHHHCCEEEEE
Confidence 899999999999999883 67777999999999999999999999 99999995 9999999999999995444433
Q ss_pred eccchhcHHhHHHHhhhcccCCCC-CCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEE-Ee-cCCC
Q 013432 228 VSLREARPSLYSLIGLREHIKKRP-PVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLV-VK-GEEG 304 (443)
Q Consensus 228 l~a~~~~Pa~~~l~~vR~~Lg~Rt-PL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alV-v~-G~eG 304 (443)
-.+++|||++++++.+|+.+.+.+ ||... +|-+| ++|. |.++.++ |+ | .|
T Consensus 234 Gqa~~l~PAdk~l~alrdt~tvds~~li~a-----------------SImSK----KlA~-----G~d~lvlDVk~G-~g 286 (500)
T TIGR03327 234 GGATNLAPADDKIIKVERPLSIDPRGQMLA-----------------SVMAK----KGAI-----GADHVVIDIPVG-KG 286 (500)
T ss_pred CCccccCHHHHHHHHhccccCCCcHHHHHH-----------------HHHHH----HHHc-----CCCeEEEEcCcC-CC
Confidence 338999999999999999776666 55533 22222 2443 7655544 55 5 45
Q ss_pred ccccccccccccccCCCCccccccccccCcceeEe--cCCcEEeeeeEEEecCCCCCCCCCCCCcCCCHHHHHHHHHHHh
Q 013432 305 ALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE--GDGVSRQSFNLEVNASNYGFEPTNTPRADRSVSKNIELGLAAL 382 (443)
Q Consensus 305 ~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~--~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~~na~~~~~iL 382 (443)
..--+ ..+.|.+..+.+.. .-|.... ..+ .|. ..|+.. .-.+.-.++...++|
T Consensus 287 Afm~~----------------~~~A~~LA~~mv~vg~~~G~~~~---a~i--Tdm---~qPlG~-~iGnaLEv~Eal~~L 341 (500)
T TIGR03327 287 AKVKT----------------VEEGRKLARDFIELGDRLGMNVE---CAI--TYG---GQPIGR-AIGPALEAKEALKVL 341 (500)
T ss_pred CcCCC----------------HHHHHHHHHHHHHHHHHcCCeEE---EEE--CCC---CCcccc-ccCcHHHHHHHHHHh
Confidence 31000 00001111111111 1111110 111 111 112222 124455666688999
Q ss_pred CC-C-CCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 383 RG-E-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 383 ~G-~-~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
+| + +.+.++.++.-|+.+|.+.| .+. ..+|.++|++.|+||+|++||++|+++|+.
T Consensus 342 ~g~~~p~dL~e~~~~la~~~L~~~g--~~~-~~~g~~~a~~~l~sG~Al~kf~~ii~aQGG 399 (500)
T TIGR03327 342 EDGEGPNSLIEKSLSLAGILLEMGG--VAP-RGEGKNLALEILESGKALEKFKEIIAAQGG 399 (500)
T ss_pred cCCCCCccHHHHHHHHHHHHHHhCC--CCC-hHHHHHHHHHHHhCcHHHHHHHHHHHHcCC
Confidence 99 4 56788999999999998875 555 799999999999999999999999999975
No 19
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=99.97 E-value=2.3e-30 Score=260.70 Aligned_cols=308 Identities=21% Similarity=0.227 Sum_probs=230.3
Q ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCC
Q 013432 66 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 145 (443)
Q Consensus 66 ~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~ 145 (443)
|+..++|+|..+|+.||.+|.+.+++.+. +|.++|.|++||+||..++|+|.+|++.++.||.+....+++.+
T Consensus 2 ~~~v~iI~KKrdG~~L~~~EI~~~i~~~~-------~~~i~D~Q~sAf~mAi~f~gM~~~E~~~lT~AMv~SGe~ld~~~ 74 (435)
T COG0213 2 MRSVEIIRKKRDGKALSKEEIEFFINGYV-------NGTIPDYQISAFLMAIFFRGMTMDEIAALTMAMVDSGEVLDLSD 74 (435)
T ss_pred CchHHHHHHhcccccCCHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCEEeecc
Confidence 45789999999999999999999999999 99999999999999999999999999999999999998887754
Q ss_pred --CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhcC
Q 013432 146 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 222 (443)
Q Consensus 146 --~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaL-Gi~i~~s~~~~~~~Le~~g 222 (443)
.+.+|.|+|||-|.++ |. ++++++|+||++|+|.++|++++.+|+ .|.||.+ |++++.+.++..+.+.+
T Consensus 75 ~~~~~vDKHStGGVgdk~---sL-~l~PiVAA~Gl~VpK~SgRgLghtGGT--~DklEsi~g~~~~~~e~~fi~~~~~-- 146 (435)
T COG0213 75 IPGPVVDKHSTGGVGDKT---SL-ILVPIVAAAGLPVPKMSGRGLGHTGGT--LDKLESIPGVNLELDEIKFIEQVKD-- 146 (435)
T ss_pred CCCceecccCCCCCCccc---ch-hHHHHHHhcCCcccccccCccccCccc--hhhhhccCCcccCcCHHHHHHHhhc--
Confidence 3589999999999664 33 489999999999999999999999999 9999998 99999999999999999
Q ss_pred ceeEEecc-chhcHHhHHHHhhhcccC-CCC-CCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEE-
Q 013432 223 IGFAYVSL-REARPSLYSLIGLREHIK-KRP-PVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLV- 298 (443)
Q Consensus 223 ~gf~fl~a-~~~~Pa~~~l~~vR~~Lg-~Rt-PL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alV- 298 (443)
+|.+-..+ .++.|+.++++.+|+.++ +.+ ||... +|.+ .++| .|.+..++
T Consensus 147 ~g~aiiGqs~~LaPADkklyalrdvtaTVdsipLias-----------------SIMS----KKlA-----~G~~~ivlD 200 (435)
T COG0213 147 NGVAIIGQSGNLAPADKKLYALRDVTATVDSIPLIAS-----------------SIMS----KKLA-----AGADAIVLD 200 (435)
T ss_pred CCeEEEeCcCCcCcccceeEEeeeccccCCcHHHHHH-----------------HHHH----HHHh-----ccCCcEEEE
Confidence 44444444 489999999999999888 444 55532 1211 2233 36544333
Q ss_pred EecCCCccccccccccccccCCCCccccccccccCcceeEec--CCcEEeeeeEEEecCCCCCCCCCCCCcCCCHHHHHH
Q 013432 299 VKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEG--DGVSRQSFNLEVNASNYGFEPTNTPRADRSVSKNIE 376 (443)
Q Consensus 299 v~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~~--~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~~~~na~ 376 (443)
|+=-.|..=-+ +.+.|.+....+-.. -|... ...+ .|. ..|+....+ +.-.++
T Consensus 201 VkvG~GAfmkt----------------~~~a~~LA~~mv~ig~~~g~~t---~a~i--Tdm---~QPLG~aiG-nalEv~ 255 (435)
T COG0213 201 VKVGSGAFMKT----------------VEDARELAKAMVEIGKGLGRKT---TAVI--TDM---NQPLGRAIG-NALEVR 255 (435)
T ss_pred ecccCCCccCC----------------HHHHHHHHHHHHHHHHhcCCeE---EEEE--cCC---CCchhhhhc-cHHHHH
Confidence 55224542100 000011111122111 11111 0122 111 112222123 334445
Q ss_pred HHHHHhCCC-CCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 377 LGLAALRGE-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 377 ~~~~iL~G~-~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
...++|+|+ +.+..+.++.-|+.+|...| .+.+.++|.+++++.|+||+|++||.+|++.|+.
T Consensus 256 Eal~~L~g~~p~dL~e~~l~la~~mL~~~g--~a~~~~~a~~~~~~vl~sGkA~ekF~~~v~aQGG 319 (435)
T COG0213 256 EALETLKGKGPPDLVELSLALAGEMLEMTG--LAKTGEEAKAKAREVLESGKALEKFKEIVAAQGG 319 (435)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHHcC--ccCccHHHHHHHHHHHhCchHHHHHHHHHHHhCC
Confidence 577899996 45788999999999988764 7999999999999999999999999999999974
No 20
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=99.71 E-value=2.2e-17 Score=128.93 Aligned_cols=65 Identities=26% Similarity=0.441 Sum_probs=54.4
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 013432 67 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 138 (443)
Q Consensus 67 ~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~ 138 (443)
+++++|+++.+|++||++|++++|+.|+ +|+++|.|+||||+++|+||||++||+||++||++++
T Consensus 1 ~~~~~l~~l~~g~~Ls~~e~~~~~~~i~-------~g~~s~~qiaAfL~al~~kget~~Eiag~~~am~~~a 65 (66)
T PF02885_consen 1 MIKEILKKLRDGEDLSREEAKAAFDAIL-------DGEVSDAQIAAFLMALRMKGETPEEIAGFAKAMREHA 65 (66)
T ss_dssp -HHHHHHHHHTT----HHHHHHHHHHHH-------TTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999 9999999999999999999999999999999999875
No 21
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.53 E-value=2.2e-15 Score=139.36 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=47.7
Q ss_pred HHhhccccccc--CCCceEEee-c-CCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHH
Q 013432 22 MNTFWPLLMRA--LPPDVIFIA-D-PEGSIMGGGGS----IGPHYSGND---PREMR-LVGALRE 74 (443)
Q Consensus 22 ~~ryhsl~~~~--lp~~~~~~a-~-~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~k 74 (443)
.+|||||+++. +|++|++|| + +||+|||++|+ ||||||||| ++|++ ++|||+.
T Consensus 126 v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IMai~h~~~pi~gvQFHPESilT~~G~~il~Nfl~~ 190 (191)
T COG0512 126 VTRYHSLVVDPETLPEELEVTAESEDGGVIMAVRHKKLPIYGVQFHPESILTEYGHRILENFLRL 190 (191)
T ss_pred EEeeEEEEecCCCCCCceEEEEEeCCCCEEEEEeeCCCCEEEEecCCccccccchHHHHHHHHhh
Confidence 47999999975 999999999 6 45699999998 999999999 89998 9999874
No 22
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.34 E-value=3.6e-13 Score=120.82 Aligned_cols=54 Identities=13% Similarity=0.325 Sum_probs=48.4
Q ss_pred HHhhcccccc--cCC-CceEEee-cCCCceeeeccC-----CCCCCCCCC---ccccc-HHHHHHHH
Q 013432 22 MNTFWPLLMR--ALP-PDVIFIA-DPEGSIMGGGGS-----IGPHYSGND---PREMR-LVGALREV 75 (443)
Q Consensus 22 ~~ryhsl~~~--~lp-~~~~~~a-~~~~~im~~~h~-----~g~qfhpes---~~G~~-l~~~L~kl 75 (443)
..|||||+.. +|| +||+||| ++||.|||.||| .|||||||| ++|+. ++|||+..
T Consensus 148 V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNflni~ 214 (223)
T KOG0026|consen 148 VGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIV 214 (223)
T ss_pred EEeeeeeeeecccCCccceeeeEeccCcEEEeeeccccccccceeecchhhhhhhhHHHHHHHHHhc
Confidence 4699999874 699 8999999 999999999998 899999999 88987 99998653
No 23
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=98.92 E-value=3.9e-10 Score=126.35 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=48.7
Q ss_pred HHHhhcccccc--cCCCceEEee-cCC-----------------------------------------------------
Q 013432 21 AMNTFWPLLMR--ALPPDVIFIA-DPE----------------------------------------------------- 44 (443)
Q Consensus 21 ~~~ryhsl~~~--~lp~~~~~~a-~~~----------------------------------------------------- 44 (443)
-..|||||+++ +||++|+++| +++
T Consensus 217 ~v~RYHSL~v~~~~lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (918)
T PLN02889 217 KVVRYHSLVIDAESLPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNG 296 (918)
T ss_pred eEEeCCCcccccCCCCCceEEEEEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 45799999995 6999999999 644
Q ss_pred CceeeeccC----CCCCCCCCC---ccccc-HHHHHHHHh
Q 013432 45 GSIMGGGGS----IGPHYSGND---PREMR-LVGALREVL 76 (443)
Q Consensus 45 ~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl~ 76 (443)
|+|||++|+ ||||||||| +.|.. |+||++...
T Consensus 297 ~viMairH~~~P~~GVQfHPESi~t~~G~~l~~nF~~~~~ 336 (918)
T PLN02889 297 KILMGIMHSTRPHYGLQFHPESIATCYGRQIFKNFREITQ 336 (918)
T ss_pred CeeEEEEECCCceEEEEeCCccccCchhHHHHHHHHHHHH
Confidence 689999998 999999999 88887 999998654
No 24
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=98.90 E-value=5.5e-10 Score=104.57 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=47.9
Q ss_pred HHHhhcccccc--cCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHH
Q 013432 21 AMNTFWPLLMR--ALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALRE 74 (443)
Q Consensus 21 ~~~ryhsl~~~--~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~k 74 (443)
...+|||+.++ ++|+.++++| ++||.|||++|+ ||||||||| +.|.. ++||+++
T Consensus 123 ~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~a~~~~~~~i~GvQfHPE~~~t~~G~~il~nFl~~ 187 (187)
T PRK08007 123 TVTRYHSLVVEPDSLPACFEVTAWSETREIMGIRHRQWDLEGVQFHPESILSEQGHQLLANFLHR 187 (187)
T ss_pred EEEEcchhEEccCCCCCCeEEEEEeCCCcEEEEEeCCCCEEEEEeCCcccCCcchHHHHHHHhhC
Confidence 46799999885 7999999999 899999999998 899999998 77877 8888763
No 25
>PRK05637 anthranilate synthase component II; Provisional
Probab=98.73 E-value=5.1e-09 Score=99.74 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=49.3
Q ss_pred HHHhhcccccccCCCceEEee-cCC---CceeeeccC----CCCCCCCCC---ccccc-HHHHHHHHhc
Q 013432 21 AMNTFWPLLMRALPPDVIFIA-DPE---GSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLA 77 (443)
Q Consensus 21 ~~~ryhsl~~~~lp~~~~~~a-~~~---~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl~~ 77 (443)
...+||++.+..+|+.++++| +++ +.+|+++|+ ||||||||| +.|.. ++|||+.++.
T Consensus 139 ~V~~~H~~~v~~lp~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~nfl~~~~~ 207 (208)
T PRK05637 139 PIARYHSLGCVVAPDGMESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSRCVEQLLA 207 (208)
T ss_pred EEEEechhhhhcCCCCeEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHHHHHHHhc
Confidence 367899999999999999999 544 368998876 999999998 88998 9999998764
No 26
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=98.66 E-value=9.5e-09 Score=96.27 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=45.7
Q ss_pred HHhhccccc--ccCCCceEEee-cCC-CceeeeccC----CCCCCCCCC---ccccc-HHHHHHH
Q 013432 22 MNTFWPLLM--RALPPDVIFIA-DPE-GSIMGGGGS----IGPHYSGND---PREMR-LVGALRE 74 (443)
Q Consensus 22 ~~ryhsl~~--~~lp~~~~~~a-~~~-~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~k 74 (443)
..+||++.+ .++|+.++++| +++ |.|||++|+ ||+|||||+ +.|.. ++||+++
T Consensus 124 v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v~a~~~~~~~i~gvQfHPE~~~t~~G~~il~nfl~~ 188 (188)
T TIGR00566 124 ATRYHSLVVEPETLPTCFPVTAWEEENIEIMAIRHRDLPLEGVQFHPESILSEQGHQLLANFLHR 188 (188)
T ss_pred EEEcccceEecccCCCceEEEEEcCCCCEEEEEEeCCCCEEEEEeCCCccCCcccHHHHHHHHhC
Confidence 368999988 47999999999 665 599999998 999999998 77887 9998863
No 27
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=98.64 E-value=1.2e-08 Score=96.17 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=47.4
Q ss_pred HHhhcccccc--cCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHH
Q 013432 22 MNTFWPLLMR--ALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREV 75 (443)
Q Consensus 22 ~~ryhsl~~~--~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl 75 (443)
..+||++.+. ++|+.++++| +++|.|||++|+ ||+|||||| +.|.. +++|++..
T Consensus 124 v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a~~~~~~~i~gvQFHPE~~~t~~g~~il~nfl~~~ 188 (195)
T PRK07649 124 ATRYHSLIVKKETLPDCLEVTSWTEEGEIMAIRHKTLPIEGVQFHPESIMTSHGKELLQNFIRKY 188 (195)
T ss_pred EEEechheEecccCCCCeEEEEEcCCCcEEEEEECCCCEEEEEECCCCCCCccHHHHHHHHHHHh
Confidence 4789999884 6999999999 899999999997 999999997 67777 99998754
No 28
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=98.55 E-value=3.6e-08 Score=92.67 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=45.3
Q ss_pred HHHhhcccccc--cCCCceEEee-cC--CC---ceeeeccC----CCCCCCCCC---ccccc-HHHHHHH
Q 013432 21 AMNTFWPLLMR--ALPPDVIFIA-DP--EG---SIMGGGGS----IGPHYSGND---PREMR-LVGALRE 74 (443)
Q Consensus 21 ~~~ryhsl~~~--~lp~~~~~~a-~~--~~---~im~~~h~----~g~qfhpes---~~G~~-l~~~L~k 74 (443)
...+||++.+. +||+.++++| ++ |+ .|||++|+ ||||||||+ +.|.. +++|+++
T Consensus 123 ~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~~i~~nFl~~ 192 (193)
T PRK08857 123 TVTRYHSLVVKNDTLPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANFLAR 192 (193)
T ss_pred EEEEccEEEEEcCCCCCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHHHHhh
Confidence 45789999875 7999999999 64 43 59999998 999999998 66877 8998865
No 29
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=98.48 E-value=5.2e-08 Score=95.58 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=48.0
Q ss_pred HHHHhhcccccccCCCceEEee-cCCCceeeeccC-----CCCCCCCCC---ccc--cc-HHHHHHHHh
Q 013432 20 RAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS-----IGPHYSGND---PRE--MR-LVGALREVL 76 (443)
Q Consensus 20 ~~~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~-----~g~qfhpes---~~G--~~-l~~~L~kl~ 76 (443)
-+.++||+..+++||+.|+++| ++||.|||++|+ +|||||||+ +.+ .. +++|++...
T Consensus 177 ~~Vns~H~q~V~~l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~ 245 (254)
T PRK11366 177 FWVNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQ 245 (254)
T ss_pred EEeehHHHHHHhhcccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHH
Confidence 3578999999999999999999 999999999986 799999998 345 33 778876553
No 30
>PLN02335 anthranilate synthase
Probab=98.48 E-value=7.1e-08 Score=92.78 Aligned_cols=55 Identities=15% Similarity=0.308 Sum_probs=47.0
Q ss_pred HHhhcccccc--cCCCc-eEEee-cCCCceeeeccC-----CCCCCCCCC---ccccc-HHHHHHHHh
Q 013432 22 MNTFWPLLMR--ALPPD-VIFIA-DPEGSIMGGGGS-----IGPHYSGND---PREMR-LVGALREVL 76 (443)
Q Consensus 22 ~~ryhsl~~~--~lp~~-~~~~a-~~~~~im~~~h~-----~g~qfhpes---~~G~~-l~~~L~kl~ 76 (443)
..+||++.++ ++|.. ++++| +++|.||+++|+ ||+|||||+ +.|.. +++|++.+.
T Consensus 147 v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~~~i~GvQfHPE~~~~~~g~~i~~nF~~~~~ 214 (222)
T PLN02335 147 AGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIIE 214 (222)
T ss_pred EEechhheEecccCCCCceEEEEEcCCCCEEEEEecCCCCEEEEEeCCCCCCChhHHHHHHHHHHHHH
Confidence 5689999885 68887 99999 899999999996 899999998 66776 899987653
No 31
>CHL00101 trpG anthranilate synthase component 2
Probab=98.48 E-value=6.1e-08 Score=90.93 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=45.3
Q ss_pred HHhhcccccc--cCCCceEEee-cCCCceeeeccC-----CCCCCCCCC---ccccc-HHHHHH
Q 013432 22 MNTFWPLLMR--ALPPDVIFIA-DPEGSIMGGGGS-----IGPHYSGND---PREMR-LVGALR 73 (443)
Q Consensus 22 ~~ryhsl~~~--~lp~~~~~~a-~~~~~im~~~h~-----~g~qfhpes---~~G~~-l~~~L~ 73 (443)
..+||+..++ ++|+.++++| +++|.|||++|+ ||+|||||+ +.|.. +++|++
T Consensus 124 v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~l~~nf~~ 187 (190)
T CHL00101 124 ATRYHSLIIDPLNLPSPLEITAWTEDGLIMACRHKKYKMLRGIQFHPESLLTTHGQQILRNFLS 187 (190)
T ss_pred EEcchhheeecccCCCceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCccCCChhHHHHHHHHHh
Confidence 3689999885 6999999999 899999999996 799999998 56776 888876
No 32
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=98.40 E-value=1.3e-07 Score=88.62 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=45.1
Q ss_pred HHhhcccccc--cCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHH
Q 013432 22 MNTFWPLLMR--ALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALR 73 (443)
Q Consensus 22 ~~ryhsl~~~--~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~ 73 (443)
..+|||..+. ++|+.+.+++ ++++.||+++|+ ||+|||||+ +.|.. ++||++
T Consensus 125 v~~~Hs~~v~~~~lp~~l~~~a~~~~~~i~a~~~~~~pi~GvQFHPE~~~~~~g~~il~nf~~ 187 (190)
T PRK06895 125 IGLYHSWAVSEENFPTPLEITAVCDENVVMAMQHKTLPIYGVQFHPESYISEFGEQILRNWLA 187 (190)
T ss_pred EEcchhheecccccCCCeEEEEECCCCcEEEEEECCCCEEEEEeCCCcCCCcchHHHHHHHHh
Confidence 4579999885 6999999999 889999999996 899999996 67776 888875
No 33
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=98.38 E-value=1.5e-07 Score=88.28 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=43.5
Q ss_pred HHHhhccccc--ccCCCceEEee-cC-C---CceeeeccC----CCCCCCCCC---ccccc-HHHHHH
Q 013432 21 AMNTFWPLLM--RALPPDVIFIA-DP-E---GSIMGGGGS----IGPHYSGND---PREMR-LVGALR 73 (443)
Q Consensus 21 ~~~ryhsl~~--~~lp~~~~~~a-~~-~---~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~ 73 (443)
-..+|||..+ .++|+.++++| ++ + ..||+++|+ ||||||||+ +.|.. +++|++
T Consensus 123 ~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQfHPE~~~~~~G~~i~~nf~~ 190 (191)
T PRK06774 123 TVTRYHSLVIAADSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFLK 190 (191)
T ss_pred EEEEeCcceeeccCCCCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEECCCcCCCccHHHHHHHHhh
Confidence 3678999988 47999999999 65 3 359999997 899999998 66766 888874
No 34
>PRK00758 GMP synthase subunit A; Validated
Probab=98.33 E-value=2.3e-07 Score=86.38 Aligned_cols=53 Identities=9% Similarity=0.005 Sum_probs=45.4
Q ss_pred HHhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHH
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALRE 74 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~k 74 (443)
..++|+..+.++|+.++++| +++|.|+|++|+ ||+|||||+ +.|.. +++|++.
T Consensus 119 ~~~~H~~~v~~l~~~~~~la~~~~~~v~a~~~~~~~~~g~QfHPE~~~~~~g~~l~~~f~~~ 180 (184)
T PRK00758 119 VWASHADEVKELPDGFEILARSDICEVEAMKHKEKPIYGVQFHPEVAHTEYGEEIFKNFLEI 180 (184)
T ss_pred EEeehhhhhhhCCCCCEEEEECCCCCEEEEEECCCCEEEEEcCCccCCCchHHHHHHHHHHH
Confidence 45789998888999999999 899999999985 999999997 45666 8888754
No 35
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=98.30 E-value=3.5e-07 Score=87.48 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=46.8
Q ss_pred HHhhcccccc--cCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHHh
Q 013432 22 MNTFWPLLMR--ALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVL 76 (443)
Q Consensus 22 ~~ryhsl~~~--~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl~ 76 (443)
..++|+..+. ++|+.++++| +++|.|||++|+ ||+|||||+ +.|.+ +.+|+....
T Consensus 128 v~~~H~~~v~~~~lp~~~~vla~s~~~~vqa~~~~~~~i~gvQfHPE~~~t~~g~~~l~~f~~~~~ 193 (214)
T PRK07765 128 ATRYHSLTILPETLPAELEVTARTDSGVIMAVRHRELPIHGVQFHPESVLTEGGHRMLANWLTVCG 193 (214)
T ss_pred EEecchheEecccCCCceEEEEEcCCCcEEEEEeCCCCEEEEeeCCCcccCcchHHHHHHHHHHhc
Confidence 4567998884 7999999999 899999999997 999999996 66776 999996543
No 36
>PRK05670 anthranilate synthase component II; Provisional
Probab=98.29 E-value=3.6e-07 Score=85.47 Aligned_cols=54 Identities=20% Similarity=0.339 Sum_probs=45.0
Q ss_pred HHHhhcccccc--cCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHH
Q 013432 21 AMNTFWPLLMR--ALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALRE 74 (443)
Q Consensus 21 ~~~ryhsl~~~--~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~k 74 (443)
...+||+..+. ++|+.++++| +++|.|||++|+ ||+|||||+ +.|.. +++|++.
T Consensus 123 ~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a~~~~~~~~~gvQfHPE~~~~~~g~~i~~~F~~~ 187 (189)
T PRK05670 123 TVTRYHSLVVDRESLPDCLEVTAWTDDGEIMGVRHKELPIYGVQFHPESILTEHGHKLLENFLEL 187 (189)
T ss_pred EEEcchhheeccccCCCceEEEEEeCCCcEEEEEECCCCEEEEeeCCCcCCCcchHHHHHHHHHh
Confidence 35689999885 4999999999 889999999985 999999998 45555 8888764
No 37
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=98.29 E-value=2.9e-07 Score=85.40 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=36.4
Q ss_pred Hhhcccccc--cCCCceEEee-c-CCCceeeeccC----CCCCCCCCC
Q 013432 23 NTFWPLLMR--ALPPDVIFIA-D-PEGSIMGGGGS----IGPHYSGND 62 (443)
Q Consensus 23 ~ryhsl~~~--~lp~~~~~~a-~-~~~~im~~~h~----~g~qfhpes 62 (443)
.+||++.++ ++|+.++++| + +||.|||++|+ ||+|||||+
T Consensus 116 ~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a~~~~~~~i~GvQfHPE~ 163 (178)
T cd01744 116 SQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVFSVQFHPEA 163 (178)
T ss_pred EcCceEEEcccccCCceEEEEEECCCCcEEEEEECCCCeEEEeeCCCC
Confidence 689999885 7999999999 6 68999999996 999999998
No 38
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=98.25 E-value=4.1e-07 Score=100.91 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=48.9
Q ss_pred HHHhhccccc--ccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---c---cccc-HHHHHHHHhcC
Q 013432 21 AMNTFWPLLM--RALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---P---REMR-LVGALREVLAG 78 (443)
Q Consensus 21 ~~~ryhsl~~--~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~---~G~~-l~~~L~kl~~g 78 (443)
...+|||+.+ .++|++++++| +++|.|||++|+ ||||||||| + .|.. |+||+..+..+
T Consensus 640 ~v~~~HS~~~~~~~LP~~~~vlA~s~d~~v~Ai~~~~~~i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~~ 711 (717)
T TIGR01815 640 TVGRYHSLFARRDRLPAELTVTAESADGLIMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMIGNVVDRLAAG 711 (717)
T ss_pred EEEEECCCCcccccCCCCeEEEEEeCCCcEEEEEECCCCEEEEEeCCeeCCccCchhHHHHHHHHHHHHhhc
Confidence 4568999876 47999999999 899999999985 999999998 2 3566 99999888644
No 39
>PLN02347 GMP synthetase
Probab=98.23 E-value=4.9e-07 Score=97.34 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=50.4
Q ss_pred HhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHHhcCC-CCC
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLAGG-HLG 82 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl~~g~-~Lt 82 (443)
-.+|+..+..+|+.++++| +++|.|||++|+ ||+|||||+ +.|+. ++||+..+..-+ +.+
T Consensus 141 ~~~Hsd~V~~lP~g~~vlA~s~~~~iaai~~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~ 210 (536)
T PLN02347 141 WMSHGDEAVKLPEGFEVVAKSVQGAVVAIENRERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWK 210 (536)
T ss_pred EEEEEEEeeeCCCCCEEEEEeCCCcEEEEEECCCCEEEEEccCCCCccchHHHHHHHHHHHHhCcCCCcC
Confidence 3478888888999999999 899999999985 999999997 67888 999997776543 444
No 40
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=98.23 E-value=4e-07 Score=86.90 Aligned_cols=57 Identities=2% Similarity=-0.155 Sum_probs=42.5
Q ss_pred HHHHHHhhcccccc-cCCCceEEee-c-CCCceeeeccC--CCCCCCCCC--ccccc-HHHHHHH
Q 013432 18 ERRAMNTFWPLLMR-ALPPDVIFIA-D-PEGSIMGGGGS--IGPHYSGND--PREMR-LVGALRE 74 (443)
Q Consensus 18 ~~~~~~ryhsl~~~-~lp~~~~~~a-~-~~~~im~~~h~--~g~qfhpes--~~G~~-l~~~L~k 74 (443)
++....+|||+.+. .-|..+..++ . +++.+|++++. ||+|||||+ +.|.. ++|||+|
T Consensus 145 ~~~~v~~~HS~~v~p~~~~~l~~t~~~~~~~~v~a~~~~~i~GvQFHPE~s~~~G~~il~nfl~~ 209 (210)
T CHL00188 145 LNPWAYFVHSYGVMPKSQACATTTTFYGKQQMVAAIEYDNIFAMQFHPEKSGEFGLWLLREFMKK 209 (210)
T ss_pred CCCEEEEeCccEecCCCCceEEEEEecCCcceEEEEecCCEEEEecCCccccHhHHHHHHHHHhh
Confidence 44567789999874 1233444444 3 47789999987 999999998 67877 9999976
No 41
>PRK13566 anthranilate synthase; Provisional
Probab=98.21 E-value=5.1e-07 Score=100.24 Aligned_cols=55 Identities=16% Similarity=0.339 Sum_probs=47.3
Q ss_pred HHhhcccccc--cCCCceEEee-cCCCceeeeccC----CCCCCCCCC------ccccc-HHHHHHHHh
Q 013432 22 MNTFWPLLMR--ALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND------PREMR-LVGALREVL 76 (443)
Q Consensus 22 ~~ryhsl~~~--~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes------~~G~~-l~~~L~kl~ 76 (443)
..+|||+.+. ++|+.++++| ++||.|||++|+ ||||||||+ +.|+. |+||++.+.
T Consensus 651 v~~~Hs~~v~~~~Lp~~~~vlA~s~dg~V~ai~~~~~pi~GVQFHPE~i~t~~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 651 VGRYHSLFADPETLPDELLVTAETEDGVIMAIEHKTLPVAAVQFHPESIMTLGGDVGLRIIENVVRLLA 719 (720)
T ss_pred EEEecceeEeeccCCCceEEEEEeCCCcEEEEEECCCCEEEEeccCeeCCcCCchhHHHHHHHHHHHhh
Confidence 4689998764 5999999999 999999999996 999999998 34777 999998763
No 42
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=98.18 E-value=5.9e-07 Score=83.02 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=42.9
Q ss_pred HhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHH
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGAL 72 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L 72 (443)
..+|+..+.++|+.++++| ++++.|+|++|+ ||+|||||. +.|+. +++|+
T Consensus 123 ~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~~~~~~~g~QfHPE~~~~~~g~~ll~~f~ 181 (181)
T cd01742 123 WMSHGDEVVKLPEGFKVIASSDNCPVAAIANEEKKIYGVQFHPEVTHTEKGKEILKNFL 181 (181)
T ss_pred EcchhhhhhhcCCCcEEEEeCCCCCEEEEEeCCCcEEEEEcCCccccCcChHHHHHhhC
Confidence 4689988889999999999 889999999986 999999997 46776 66663
No 43
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=98.18 E-value=9.2e-07 Score=82.57 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=45.8
Q ss_pred HhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHH
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREV 75 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl 75 (443)
..+|+..+.++|+.++++| ++++.|+|++|+ ||+|||||. +.|+. +++|+..+
T Consensus 123 ~~~H~~~v~~l~~~~~vla~~~~~~v~a~~~~~~~~~g~QfHPE~~~~~~g~~i~~~f~~~~ 184 (188)
T TIGR00888 123 WMSHGDKVKELPEGFKVLATSDNCPVAAMAHEEKPIYGVQFHPEVTHTEYGNELLENFVYDV 184 (188)
T ss_pred EeEccceeecCCCCCEEEEECCCCCeEEEEECCCCEEEEeeCCccCCChhhHHHHHHHHHHh
Confidence 3479998888999999999 888999999987 999999997 46777 99998754
No 44
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=6.4e-07 Score=93.46 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=41.9
Q ss_pred HHhhcccccccCCC-ceEEee--cCCC--ceeeeccC----CCCCCCCCC---ccccc-HHHHHHH
Q 013432 22 MNTFWPLLMRALPP-DVIFIA--DPEG--SIMGGGGS----IGPHYSGND---PREMR-LVGALRE 74 (443)
Q Consensus 22 ~~ryhsl~~~~lp~-~~~~~a--~~~~--~im~~~h~----~g~qfhpes---~~G~~-l~~~L~k 74 (443)
-+|||||+++.+|- .+.+.+ .||+ .+|++.|. ||+|||||| ..|-. ++||++.
T Consensus 151 ~~RYHSL~in~~pid~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~~s~~g~~lfkNFl~l 216 (767)
T KOG1224|consen 151 VVRYHSLIINSLPIDLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPESIASTYGSQLFKNFLDL 216 (767)
T ss_pred eEEeEEEEecCCchhhhcceeEeecCCceEEEEeeccCCCccceeeChHHhhhhhhHHHHHHHHHh
Confidence 36999999999994 566666 3454 79999998 999999998 66655 7777754
No 45
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=98.15 E-value=1e-06 Score=90.58 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=42.1
Q ss_pred Hhhcccccc--cCCCceEEee-c-CCCceeeeccC----CCCCCCCCCcc----ccc-HHHHHHH
Q 013432 23 NTFWPLLMR--ALPPDVIFIA-D-PEGSIMGGGGS----IGPHYSGNDPR----EMR-LVGALRE 74 (443)
Q Consensus 23 ~ryhsl~~~--~lp~~~~~~a-~-~~~~im~~~h~----~g~qfhpes~~----G~~-l~~~L~k 74 (443)
.+||+..++ ++|+.+++++ + +||.|||++|+ ||||||||+.. +.. +.+|++.
T Consensus 295 s~~H~~~V~~~~lp~~l~v~a~~~~Dg~iegi~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~ 359 (360)
T PRK12564 295 SQNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPEASPGPHDSAYLFDEFVEL 359 (360)
T ss_pred ecCcccEEcccccCCceEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCCCCCCCHHHHHHHHHHh
Confidence 579999985 7999999999 5 69999999997 99999999832 222 6666653
No 46
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=98.05 E-value=2.3e-06 Score=87.90 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=41.6
Q ss_pred Hhhcccccc--cCC-CceEEee-c-CCCceeeeccC----CCCCCCCCCcccc----c-HHHHHHHH
Q 013432 23 NTFWPLLMR--ALP-PDVIFIA-D-PEGSIMGGGGS----IGPHYSGNDPREM----R-LVGALREV 75 (443)
Q Consensus 23 ~ryhsl~~~--~lp-~~~~~~a-~-~~~~im~~~h~----~g~qfhpes~~G~----~-l~~~L~kl 75 (443)
.+||+..++ ++| +.|++++ + +||.|||++|+ ||||||||+..|. . +.+|++.+
T Consensus 290 sqnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~ 356 (358)
T TIGR01368 290 SQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQYHPEASPGPHDTEYLFDEFIDLI 356 (358)
T ss_pred ecCCCcEEcccccCCCceEEEEEECCCCcEEEEEECCCCEEEEEECCCCCCCCCChHHHHHHHHHHh
Confidence 478999885 588 6799999 5 78999999998 9999999983332 2 66666543
No 47
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=98.05 E-value=2e-06 Score=80.04 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=42.3
Q ss_pred HHhhcccccccCCCc--eEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHH
Q 013432 22 MNTFWPLLMRALPPD--VIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGAL 72 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~--~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L 72 (443)
...+|+..+..+|.. ++++| ++++.|||++|+ ||+|||||+ +.|+. ++||+
T Consensus 123 ~~~~H~~~v~~~~~~~~~~~la~~~~~~v~a~~~~~~~i~gvQfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 123 VGRYHSLVVDPDPLPDLLEVTASTEDGVIMALRHRDLPIYGVQFHPESILTEYGLRLLENFL 184 (184)
T ss_pred EEeCcEEEEecCCCCceEEEEEeCCCCeEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHhhC
Confidence 456788888777776 89999 889999999986 999999997 66777 77763
No 48
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.01 E-value=1.8e-06 Score=80.94 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=37.6
Q ss_pred HHhhcccccccCCCceEEee-cCCCceeeeccC-----CCCCCCCCC
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS-----IGPHYSGND 62 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~-----~g~qfhpes 62 (443)
..+||+..+.++|+.++++| ++||.|||++|+ +|+|||||.
T Consensus 127 v~~~H~~~v~~~~~~~~vla~~~d~~vea~~~~~~~~~~gvQfHPE~ 173 (189)
T cd01745 127 VNSLHHQAIKRLADGLRVEARAPDGVIEAIESPDRPFVLGVQWHPEW 173 (189)
T ss_pred eechHHHHHhhcCCCCEEEEECCCCcEEEEEeCCCCeEEEEecCCCc
Confidence 45799999989999999999 889999999985 899999998
No 49
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.99 E-value=3.4e-06 Score=86.52 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=42.5
Q ss_pred Hhhcccccc--cCCC-ceEEee-c-CCCceeeeccC----CCCCCCCCC---cc-ccc-HHHHHHHHh
Q 013432 23 NTFWPLLMR--ALPP-DVIFIA-D-PEGSIMGGGGS----IGPHYSGND---PR-EMR-LVGALREVL 76 (443)
Q Consensus 23 ~ryhsl~~~--~lp~-~~~~~a-~-~~~~im~~~h~----~g~qfhpes---~~-G~~-l~~~L~kl~ 76 (443)
.+||++.++ ++|+ .+++++ + .||.|||++|+ ||||||||+ +. +.. +.+|++.+.
T Consensus 284 s~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 351 (354)
T PRK12838 284 SQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPEAHPGPHDAEYIFDEFLEMME 351 (354)
T ss_pred ccchheEecccccCCCCcEEEEEECCCCeEEEEEECCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHH
Confidence 579999985 4775 489998 4 79999999998 999999998 22 333 778887664
No 50
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=97.99 E-value=2.2e-06 Score=79.82 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=43.9
Q ss_pred Hhhccccccc---CCCceEEee-cCCC-ceeeeccC----CCCCCCCCC---ccccc-HHHHHHH
Q 013432 23 NTFWPLLMRA---LPPDVIFIA-DPEG-SIMGGGGS----IGPHYSGND---PREMR-LVGALRE 74 (443)
Q Consensus 23 ~ryhsl~~~~---lp~~~~~~a-~~~~-~im~~~h~----~g~qfhpes---~~G~~-l~~~L~k 74 (443)
.+||+..+.. +|+.++++| ++++ .+|+++|+ ||+|||||. +.|+. ++||+-+
T Consensus 127 ~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~~~i~g~QfHPE~~~~~~~~~~l~nf~~~ 191 (192)
T PF00117_consen 127 YQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKDNPIYGVQFHPEFSSSPGGPQLLKNFFLK 191 (192)
T ss_dssp EEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECTTSEEEESSBTTSTTSTTHHHHHHHHHHH
T ss_pred ccccceeeecccccccccccccccccccccccccccccEEEEEecCCcCCCCCCcchhhhheeEe
Confidence 4789999987 999999999 7666 89999998 999999997 44555 8888754
No 51
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=97.94 E-value=3.6e-06 Score=87.53 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=37.7
Q ss_pred Hhhccccc--ccCCCceEEee-c-CCCceeeeccC----CCCCCCCCCccc
Q 013432 23 NTFWPLLM--RALPPDVIFIA-D-PEGSIMGGGGS----IGPHYSGNDPRE 65 (443)
Q Consensus 23 ~ryhsl~~--~~lp~~~~~~a-~-~~~~im~~~h~----~g~qfhpes~~G 65 (443)
.+||+..| .+||+.+++++ + .||.|||++|+ ||||||||+..|
T Consensus 357 sqnHg~aVd~~sLp~~~~vt~~nlnDgtvegi~~~~~pi~gVQFHPEa~pg 407 (415)
T PLN02771 357 AQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPALNVMSLQYHPEASPG 407 (415)
T ss_pred ecCHHHhhccccCCCceEEEEEeCCCCcEEEEEECCCCEEEEEcCCCCCCC
Confidence 47999988 47999999999 5 79999999998 999999998443
No 52
>PRK00074 guaA GMP synthase; Reviewed
Probab=97.92 E-value=6.9e-06 Score=88.34 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=61.8
Q ss_pred hcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHHh-cCCCCCHHH----HHHHH
Q 013432 25 FWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVL-AGGHLGYEE----VQGVL 90 (443)
Q Consensus 25 yhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl~-~g~~Lt~eE----a~~~~ 90 (443)
+|+..+.++|+.++++| ++++.|+|++|+ ||+|||||. +.|+. +++|+.++. ..++.+.++ ..+-+
T Consensus 130 ~H~d~V~~lp~g~~vlA~s~~~~v~ai~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~~~~~~~~l 209 (511)
T PRK00074 130 SHGDKVTELPEGFKVIASTENCPIAAIANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEI 209 (511)
T ss_pred ECCeEEEecCCCcEEEEEeCCCCEEEEEeCCCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Confidence 78888889999999999 889999999974 999999997 67887 999996664 344555332 22233
Q ss_pred HHhcCC--cCCCCCCCCCHHHHHHHHH
Q 013432 91 RDVLPL--QVDNKAPGVSESLLSAFLI 115 (443)
Q Consensus 91 ~~il~~--~~~~~~g~~~~~qigAfL~ 115 (443)
+..+.. .+=-.+|.++-.-++++|.
T Consensus 210 ~~~v~~~~vlva~SGGvDS~vll~ll~ 236 (511)
T PRK00074 210 REQVGDKKVILGLSGGVDSSVAAVLLH 236 (511)
T ss_pred HHhcCCCcEEEEeCCCccHHHHHHHHH
Confidence 332200 0000267776666665553
No 53
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.91 E-value=3.5e-06 Score=80.49 Aligned_cols=52 Identities=4% Similarity=-0.024 Sum_probs=38.2
Q ss_pred HHhhcccccccCCCceEEee-cCC-Ccee-eeccC---CCCCCCCCC--ccccc-HHHHHHH
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPE-GSIM-GGGGS---IGPHYSGND--PREMR-LVGALRE 74 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~-~~im-~~~h~---~g~qfhpes--~~G~~-l~~~L~k 74 (443)
..||||+.+.. ++.+.+++ ++. |++| ++..+ ||+|||||+ +.|.. ++|||+.
T Consensus 149 v~~~HS~~~~~-~~~l~~sa~~~~~g~~~~a~~~~~~i~GvQFHPE~s~~~G~~iL~nfl~~ 209 (210)
T PRK14004 149 FYFIHSYRPTG-AEGNAITGLCDYYQEKFPAVVEKENIFGTQFHPEKSHTHGLKLLENFIEF 209 (210)
T ss_pred EEEeceeecCC-CCcceEEEeeeECCEEEEEEEecCCEEEEeCCcccCchhHHHHHHHHHhh
Confidence 47899986533 45677777 654 6644 45544 999999998 77887 9999874
No 54
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.90 E-value=4.7e-06 Score=78.93 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=40.0
Q ss_pred HhhcccccccCCCceEEee-cCCC-ceeeeccC---CCCCCCCCC--ccccc-HHHHHHHH
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEG-SIMGGGGS---IGPHYSGND--PREMR-LVGALREV 75 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~-~im~~~h~---~g~qfhpes--~~G~~-l~~~L~kl 75 (443)
.+|||+.+ .+|+.+.++| +++| ++|++++. ||||||||+ +.|.. +++|++..
T Consensus 143 ~~~Hs~~v-~~~~~~~v~a~~~~~~~~~a~~~~~~i~GvQfHPE~~~~~g~~l~~~fl~~~ 202 (205)
T PRK13141 143 YFVHSYYA-DPCDEEYVAATTDYGVEFPAAVGKDNVFGAQFHPEKSGDVGLKILKNFVEMV 202 (205)
T ss_pred EEECeeEe-ccCCcCeEEEEEeCCcEEEEEEecCCEEEEeCCCccchHHHHHHHHHHHHHh
Confidence 47999887 4677788888 6655 78888665 999999998 55665 88887654
No 55
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=97.90 E-value=6.8e-06 Score=85.00 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=42.2
Q ss_pred Hhhcccccc--cCCC-ceEEee-c-CCCceeeeccC----CCCCCCCCC---ccccc--HHHHHHHHh
Q 013432 23 NTFWPLLMR--ALPP-DVIFIA-D-PEGSIMGGGGS----IGPHYSGND---PREMR--LVGALREVL 76 (443)
Q Consensus 23 ~ryhsl~~~--~lp~-~~~~~a-~-~~~~im~~~h~----~g~qfhpes---~~G~~--l~~~L~kl~ 76 (443)
.+||++.++ ++|. .+++++ + +||.|||++|+ ||||||||+ +++.. +.+|++.+.
T Consensus 308 sq~H~~~v~~~sv~~~~~~vt~~~~nDgtvegi~h~~~pi~gVQFHPE~~~gp~d~~~lf~~Fv~~~~ 375 (382)
T CHL00197 308 SQNHGFAVNLESLAKNKFYITHFNLNDGTVAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEIIK 375 (382)
T ss_pred ecchheEeeccccCCCCcEEEEEECCCCCEEEEEECCCCcEEEeeCCCCCCCCCCHHHHHHHHHHHHH
Confidence 489999884 5885 688987 4 78999999998 999999998 34332 667776553
No 56
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.84 E-value=5.6e-06 Score=78.90 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=39.0
Q ss_pred HHHhhcccccccCCCceEEee-cCCC-ceeeeccC---CCCCCCCCC--ccccc-HHHHHHH
Q 013432 21 AMNTFWPLLMRALPPDVIFIA-DPEG-SIMGGGGS---IGPHYSGND--PREMR-LVGALRE 74 (443)
Q Consensus 21 ~~~ryhsl~~~~lp~~~~~~a-~~~~-~im~~~h~---~g~qfhpes--~~G~~-l~~~L~k 74 (443)
...+|||+.+...|+ ..++| ++++ .+++++.+ ||+|||||+ +.|.. ++||++.
T Consensus 147 ~v~~~Hs~~v~~~~~-~~~la~s~~~~~~~a~~~~~~i~GvQFHPE~s~~~G~~ll~nfl~~ 207 (209)
T PRK13146 147 RFYFVHSYYAQPANP-ADVVAWTDYGGPFTAAVARDNLFATQFHPEKSQDAGLALLRNFLAW 207 (209)
T ss_pred EEEEEeEEEEEcCCC-CcEEEEEcCCCEEEEEEecCCEEEEEcCCcccHHHHHHHHHHHHhh
Confidence 456899998876553 46777 6654 46666555 999999998 56776 8888764
No 57
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.80 E-value=5.8e-06 Score=77.83 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=35.5
Q ss_pred HHHhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC--ccccc-HHHHH
Q 013432 21 AMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND--PREMR-LVGAL 72 (443)
Q Consensus 21 ~~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes--~~G~~-l~~~L 72 (443)
...+|||+.+.. |+.+.++| ++++..|+..+. ||+|||||+ +.|.. ++|||
T Consensus 140 ~v~~~Hs~~v~~-~~~~~~la~s~~~~~~~~~~~~~~i~GvQFHPE~~~~~g~~~~~nf~ 198 (198)
T cd01748 140 YFYFVHSYYAPP-DDPDYILATTDYGGKFPAAVEKDNIFGTQFHPEKSGKAGLKLLKNFL 198 (198)
T ss_pred eEEEEeEEEEec-CCcceEEEEecCCCeEEEEEEcCCEEEEECCCccccHhHHHHHHhhC
Confidence 346899998864 44567788 666656655443 999999998 55655 66653
No 58
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=97.74 E-value=1.5e-05 Score=89.24 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=41.9
Q ss_pred HHHhhccccccc-CCCc--eEEee-cC-CCceeeeccC----CCCCCCCCC---ccc-cc-HHHHHHHHh
Q 013432 21 AMNTFWPLLMRA-LPPD--VIFIA-DP-EGSIMGGGGS----IGPHYSGND---PRE-MR-LVGALREVL 76 (443)
Q Consensus 21 ~~~ryhsl~~~~-lp~~--~~~~a-~~-~~~im~~~h~----~g~qfhpes---~~G-~~-l~~~L~kl~ 76 (443)
...+|||+.+.. .|++ +.+++ ++ ++.|||++|+ ||||||||+ +.| .. ++||++...
T Consensus 136 ~v~~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~~pi~GVQFHPE~~~s~~g~~~Lf~nFl~~~~ 205 (742)
T TIGR01823 136 KSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKPWFGVQYHPESCCSELGSGKLVSNFLKLAF 205 (742)
T ss_pred ceeEEEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcCCceEEEEeCcccCCCCccHHHHHHHHHHHHH
Confidence 356999998854 5666 45555 43 4689999998 999999998 444 44 889987754
No 59
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=97.74 E-value=1.9e-05 Score=74.52 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=42.1
Q ss_pred HHhhcccccccCCCceEEee-cCCCceeeeccC--CCCCCCCCCccccc-HHHHHHHH
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS--IGPHYSGNDPREMR-LVGALREV 75 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~--~g~qfhpes~~G~~-l~~~L~kl 75 (443)
..+||+..+..+|+.++++| ++|+ +|+++.. ||+|||||-....+ +++|+..+
T Consensus 141 ~~~~H~~~v~~lp~~~~~la~~~~~-~~a~~~~~~~g~QfHPE~~~~~~l~~~f~~~~ 197 (200)
T PRK13527 141 AVFIRAPAITKVGGDVEVLAKLDDR-IVAVEQGNVLATAFHPELTDDTRIHEYFLKKV 197 (200)
T ss_pred EEEEccccccccCCCeEEEEEECCE-EEEEEECCEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 36789998889999999999 7776 5688766 99999999733355 78888765
No 60
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.65 E-value=3.2e-05 Score=75.17 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=36.6
Q ss_pred HhhcccccccCCCceEEee-cCCCceeeeccC---CCCCCCCCC
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGND 62 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~---~g~qfhpes 62 (443)
..||+..+.+||+.++++| ++++.|+|++++ ||+|||||-
T Consensus 145 ~~~H~d~v~~lp~~~~~la~s~~~~iqa~~~~~~i~gvQfHPE~ 188 (237)
T PRK09065 145 HLTHLQSVLRLPPGAVVLARSAQDPHQAFRYGPHAWGVQFHPEF 188 (237)
T ss_pred eeehhhhhhhCCCCCEEEEcCCCCCeeEEEeCCCEEEEEeCCcC
Confidence 5689988889999999999 888999999997 999999996
No 61
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.58 E-value=0.00012 Score=71.34 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=35.8
Q ss_pred hhcccccccCCCceEEee-cCCCceeeeccC---CCCCCCCCC
Q 013432 24 TFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGND 62 (443)
Q Consensus 24 ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~---~g~qfhpes 62 (443)
++|+..|.+||+.++++| ++++.|||++++ ||+|||||-
T Consensus 150 ~~H~d~V~~lp~~~~vlA~s~~~~vqa~~~~~~~~gvQfHPE~ 192 (242)
T PRK07567 150 VGHKEAVSALPPGAVLLATSPTCPVQMFRVGENVYATQFHPEL 192 (242)
T ss_pred eehhhhhhhCCCCCEEEEeCCCCCEEEEEeCCCEEEEEeCCcC
Confidence 569988889999999999 888999999986 999999996
No 62
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.55 E-value=3.5e-05 Score=72.84 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=35.8
Q ss_pred HHhhcccccccCCCceEEee-cCCC--ceeeeccC--CCCCCCCCC--ccccc-HHHHHH
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEG--SIMGGGGS--IGPHYSGND--PREMR-LVGALR 73 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~--~im~~~h~--~g~qfhpes--~~G~~-l~~~L~ 73 (443)
..+|||+.+..+| +.+++ +++| .++++++. ||+|||||+ +.|.. +++|++
T Consensus 143 ~~~vHS~~v~~~~--~~v~a~~~~g~~~~~a~~~~~i~GvQFHPE~~~~~g~~ll~~Fl~ 200 (201)
T PRK13152 143 FYFVHSFYVKCKD--EFVSAKAQYGHKFVASLQKDNIFATQFHPEKSQNLGLKLLENFAR 200 (201)
T ss_pred EEEEcccEeecCC--CcEEEEECCCCEEEEEEecCCEEEEeCCCeecChhhHHHHHHHHh
Confidence 4579999886555 35666 5655 45567766 999999998 55666 888775
No 63
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.54 E-value=4.5e-05 Score=74.26 Aligned_cols=39 Identities=10% Similarity=-0.025 Sum_probs=34.3
Q ss_pred hhcccccccCCCceEEee-cCCCceeeeccC---CCCCCCCCCc
Q 013432 24 TFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGNDP 63 (443)
Q Consensus 24 ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~---~g~qfhpes~ 63 (443)
++|+.. .+||+.++++| ++++.+|++++. ||+|||||..
T Consensus 140 ~~H~d~-~~lP~~~~~LA~s~~~~~qa~~~~~~v~g~QfHPE~~ 182 (239)
T PRK06490 140 HWHREG-FDLPAGAELLATGDDFPNQAFRYGDNAWGLQFHPEVT 182 (239)
T ss_pred EECCcc-ccCCCCCEEEEeCCCCCeEEEEeCCCEEEEeeCccCC
Confidence 457766 57999999999 899999999997 9999999985
No 64
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=97.52 E-value=3.6e-05 Score=72.52 Aligned_cols=51 Identities=10% Similarity=0.127 Sum_probs=34.8
Q ss_pred HHHhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC--ccccc-HHHHHH
Q 013432 21 AMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND--PREMR-LVGALR 73 (443)
Q Consensus 21 ~~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes--~~G~~-l~~~L~ 73 (443)
...+|||+.+...| .. +++ +++|..|...+. ||+|||||+ +.|.. +++|++
T Consensus 137 ~v~~~Hs~~v~~~~-~~-~~a~~~~g~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~~f~~ 195 (196)
T TIGR01855 137 YFYFVHSYYAVCEE-EA-VLAYADYGEKFPAAVQKGNIFGTQFHPEKSGKTGLKLLENFLE 195 (196)
T ss_pred EEEEECeeEecCCC-Cc-EEEEEcCCcEEEEEEecCCEEEEECCCccCcHhHHHHHHHHHh
Confidence 34579999886555 44 455 667666544443 999999998 44555 777764
No 65
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.50 E-value=4e-05 Score=72.32 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=36.5
Q ss_pred HHHhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC--ccccc-HHHHHH
Q 013432 21 AMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND--PREMR-LVGALR 73 (443)
Q Consensus 21 ~~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes--~~G~~-l~~~L~ 73 (443)
..-+|||.. +|+...++| ++.|..|...+. ||+|||||+ +.|.. ++||++
T Consensus 138 ~v~~~Hs~~---lp~~~~~la~s~~~~~~~~~~~~~~i~G~QFHPE~~~~~G~~~l~nfl~ 195 (196)
T PRK13170 138 YFYFVHSYA---MPVNEYTIAQCNYGEPFSAAIQKDNFFGVQFHPERSGAAGAQLLKNFLE 195 (196)
T ss_pred EEEEECeee---cCCCCcEEEEecCCCeEEEEEEcCCEEEEECCCCCcccccHHHHHHHhh
Confidence 455788864 566666777 776776655553 999999998 77887 888874
No 66
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.49 E-value=3.7e-05 Score=71.50 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=37.4
Q ss_pred HHHhhcccccccCCCceEEee-cCCCceeeeccC---CCCCCCCC
Q 013432 21 AMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGN 61 (443)
Q Consensus 21 ~~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~---~g~qfhpe 61 (443)
-...+|+..+..+|+.++++| ++++.|++++++ ||+|||||
T Consensus 136 ~v~~~H~~~v~~lp~~~~~la~~~~~~v~~~~~~~~~~g~QfHPE 180 (188)
T cd01741 136 PVFHWHGDTVVELPPGAVLLASSEACPNQAFRYGDRALGLQFHPE 180 (188)
T ss_pred eEEEEeccChhhCCCCCEEeecCCCCCcceEEecCCEEEEccCch
Confidence 457799999888999999999 889999999986 99999999
No 67
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=97.46 E-value=3.8e-05 Score=72.69 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=42.2
Q ss_pred hhcccccccCCCceEEee-cCCCceeeeccC---CCCCCCCCC--ccccc-HHHHHHHH
Q 013432 24 TFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGND--PREMR-LVGALREV 75 (443)
Q Consensus 24 ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~---~g~qfhpes--~~G~~-l~~~L~kl 75 (443)
..|...+..||+.++++| ++.+.+.|+++. ||+|||||. +.|.. +++|..++
T Consensus 135 ~sH~D~v~~lP~g~~vlA~s~~cp~qa~~~~~~~~gvQFHpEv~~~~~~~~l~nf~~~i 193 (198)
T COG0518 135 MSHGDTVVELPEGAVVLASSETCPNQAFRYGKRAYGVQFHPEVTHEYGEALLENFAHEI 193 (198)
T ss_pred cchhCccccCCCCCEEEecCCCChhhheecCCcEEEEeeeeEEeHHHHHHHHHHhhhhh
Confidence 456666778999999999 888888888886 999999998 66666 77776543
No 68
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.44 E-value=4.8e-05 Score=71.71 Aligned_cols=51 Identities=8% Similarity=0.039 Sum_probs=35.0
Q ss_pred HHhhcccccccCCCceEEee-cCCCceee--eccC--CCCCCCCCC--ccccc-HHHHHH
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIMG--GGGS--IGPHYSGND--PREMR-LVGALR 73 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im~--~~h~--~g~qfhpes--~~G~~-l~~~L~ 73 (443)
..+|||+.+...|. +.++| +++|..|. ++++ ||+|||||+ +.|.. +++|++
T Consensus 140 ~~~~Hs~~v~~~~~-~~~lA~s~~~~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~nfl~ 198 (199)
T PRK13181 140 FYFVHSYYVPCEDP-EDVLATTEYGVPFCSAVAKDNIYAVQFHPEKSGKAGLKLLKNFAE 198 (199)
T ss_pred EEEeCeeEeccCCc-ccEEEEEcCCCEEEEEEECCCEEEEECCCccCCHHHHHHHHHHHh
Confidence 35889987754453 45777 66566554 4444 999999997 55665 777764
No 69
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.33 E-value=9.8e-05 Score=69.79 Aligned_cols=52 Identities=8% Similarity=0.060 Sum_probs=35.9
Q ss_pred HhhcccccccCCCceEEee-cCCCce--eeeccC--CCCCCCCCC--ccccc-HHHHHHHH
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSI--MGGGGS--IGPHYSGND--PREMR-LVGALREV 75 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~i--m~~~h~--~g~qfhpes--~~G~~-l~~~L~kl 75 (443)
.+|||..+. +|+.+.++| +++|.. ++..+. ||+|||||. +.|.. +++|++..
T Consensus 139 ~~~Hs~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~gvQfHPE~~~~~g~~i~~~f~~~~ 198 (200)
T PRK13143 139 YFVHSYYAY-PDDEDYVVATTDYGIEFPAAVCNDNVFGTQFHPEKSGETGLKILENFVELI 198 (200)
T ss_pred EEEeeeeeC-CCCcceEEEEEcCCCEEEEEEEcCCEEEEeCCCccchHHHHHHHHHHHHHH
Confidence 458988664 556678888 777643 333333 999999997 55655 88887643
No 70
>PRK05665 amidotransferase; Provisional
Probab=97.26 E-value=0.00063 Score=66.35 Aligned_cols=68 Identities=15% Similarity=-0.032 Sum_probs=50.4
Q ss_pred hhcccccccCCCceEEee-cCCCceeeeccC---CCCCCCCCCcccccHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 013432 24 TFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVL 94 (443)
Q Consensus 24 ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~---~g~qfhpes~~G~~l~~~L~kl~~g~~Lt~eEa~~~~~~il 94 (443)
.+|...|.+||+..+++| ++.+.+.+++.. ||+|||||-.... ++.+|+. +.+.++.+++.+.+..+.
T Consensus 146 ~~H~D~V~~LP~ga~~La~s~~~~~q~~~~~~~~~g~QfHPE~~~~~-~~~~l~~--~~~~~~~~~~~~~~~~l~ 217 (240)
T PRK05665 146 ISHQDQVTALPEGATVIASSDFCPFAAYHIGDQVLCFQGHPEFVHDY-SRALLDL--RQEHLGEEVYSKGVASLA 217 (240)
T ss_pred EEcCCeeeeCCCCcEEEEeCCCCcEEEEEeCCCEEEEecCCcCcHHH-HHHHHHH--hhhhcCHHHHHHHHHHcC
Confidence 567777788999999999 888999999875 9999999973321 2333322 123578888888888775
No 71
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=97.15 E-value=0.00029 Score=66.15 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=37.5
Q ss_pred hcccccccCCCceEEee-cCCCceeeeccC--CCCCCCCCCccccc-HHHHHHHH
Q 013432 25 FWPLLMRALPPDVIFIA-DPEGSIMGGGGS--IGPHYSGNDPREMR-LVGALREV 75 (443)
Q Consensus 25 yhsl~~~~lp~~~~~~a-~~~~~im~~~h~--~g~qfhpes~~G~~-l~~~L~kl 75 (443)
.|+-.+..+|+.+++.| ++++.+ +++.+ ||+|||||-....+ +++|++.+
T Consensus 134 ~H~d~v~~lp~~~~vlA~~~~~~~-~~~~~~~~g~QfHPE~~~~~~~~~~f~~~~ 187 (189)
T PRK13525 134 IRAPYIEEVGPGVEVLATVGGRIV-AVRQGNILATSFHPELTDDTRVHRYFLEMV 187 (189)
T ss_pred EeCceeeccCCCcEEEEEcCCEEE-EEEeCCEEEEEeCCccCCCchHHHHHHHHh
Confidence 56666678999999999 655444 56665 99999999855566 88887643
No 72
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.09 E-value=0.0003 Score=69.89 Aligned_cols=43 Identities=7% Similarity=0.010 Sum_probs=33.3
Q ss_pred HHHHhhcccccc--cCC------CceEEee-cCC--Cc--eeeeccC----CCCCCCCCC
Q 013432 20 RAMNTFWPLLMR--ALP------PDVIFIA-DPE--GS--IMGGGGS----IGPHYSGND 62 (443)
Q Consensus 20 ~~~~ryhsl~~~--~lp------~~~~~~a-~~~--~~--im~~~h~----~g~qfhpes 62 (443)
-...+|||+.++ ++| ..+.+++ ++| |. ||+++|+ ||+|||||.
T Consensus 155 ~~~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEk 214 (273)
T cd01747 155 PLTMNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEK 214 (273)
T ss_pred cHHHhhcccccCHhhcccccccccceEEEEEEecCCCceEEEEEEecCCceEEEecCCCc
Confidence 356789999884 455 4678888 433 53 7999998 999999996
No 73
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=96.99 E-value=0.0002 Score=68.68 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=38.8
Q ss_pred HHHHHHHhhcccccccCCCceEEee-cCCCceeeeccC------CCCCCCCC
Q 013432 17 GERRAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS------IGPHYSGN 61 (443)
Q Consensus 17 ~~~~~~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~------~g~qfhpe 61 (443)
.++...+.||...++.|.+.|+++| ++||.|-|+++. +|||||||
T Consensus 166 ~~~~~vns~Hhq~v~~l~~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 166 SEEIEVNSFHHQAVKPLGEGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp HCTEEEEEEECEEECCHHCCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred cCcceeecchhhhhhccCCCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 3455678899999999999999999 889999999986 89999998
No 74
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=96.91 E-value=0.00028 Score=68.02 Aligned_cols=43 Identities=19% Similarity=0.377 Sum_probs=39.9
Q ss_pred HHHHhhcccccccCCCceEEee-cCCCceeeeccC-----CCCCCCCCC
Q 013432 20 RAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS-----IGPHYSGND 62 (443)
Q Consensus 20 ~~~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~-----~g~qfhpes 62 (443)
...+.||-..+++|-+.|+|+| ++||.|.|++++ .|||||||=
T Consensus 171 ~~VNS~HhQaIk~La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~ 219 (243)
T COG2071 171 FMVNSFHHQAIKKLAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEY 219 (243)
T ss_pred eeecchHHHHHHHhCCCcEEEEECCCCcEEEEEecCCceEEEEecChhh
Confidence 5678899999999999999999 999999999998 899999995
No 75
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.0034 Score=65.20 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=60.8
Q ss_pred hcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHHhcC-CCCC-----HHHHHHH
Q 013432 25 FWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLAG-GHLG-----YEEVQGV 89 (443)
Q Consensus 25 yhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl~~g-~~Lt-----~eEa~~~ 89 (443)
.|++.+..+|..|++.+ +...-+-++-|. ||+|||||. +.|+. ++||+-.+..+ .+.| .++..++
T Consensus 145 tHgdsl~~v~~g~kv~a~s~n~~va~i~~e~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~tmenre~e~I~~i 224 (552)
T KOG1622|consen 145 THGDSLSKVPEGFKVVAFSGNKPVAGILNELKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFTMENREEECINEI 224 (552)
T ss_pred ccccchhhccccceeEEeecCcceeeehhhhhhhhcCCCCCcccccCchhHHHHHHHHHHcCCccCcchhhhhHHHHHHH
Confidence 35555678999999999 655557788776 999999997 78887 99999666555 4555 3333444
Q ss_pred HHHhcCC-cCCCCCCCCCHHHHHHHHHHH
Q 013432 90 LRDVLPL-QVDNKAPGVSESLLSAFLIGQ 117 (443)
Q Consensus 90 ~~~il~~-~~~~~~g~~~~~qigAfL~al 117 (443)
-+.+-+. -+---+|.++..-.+++|...
T Consensus 225 ~k~vG~~~Vl~~vSGgvdStV~a~Ll~~a 253 (552)
T KOG1622|consen 225 RKWVGDYKVLVAVSGGVDSTVCAALLRRA 253 (552)
T ss_pred HHHhcccceEEEecCCchHHHHHHHHHHh
Confidence 3333200 000005777777777766544
No 76
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=96.46 E-value=0.002 Score=60.33 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=31.5
Q ss_pred hcccccccCCCceEEeecCCCceeeeccC--CCCCCCCCCccccc
Q 013432 25 FWPLLMRALPPDVIFIADPEGSIMGGGGS--IGPHYSGNDPREMR 67 (443)
Q Consensus 25 yhsl~~~~lp~~~~~~a~~~~~im~~~h~--~g~qfhpes~~G~~ 67 (443)
.|.-.+..+|+.++++|..++.+-|++.+ ||+|||||-....+
T Consensus 133 ~h~~~v~~lp~~~~vla~~~~~~~a~~~~~~~gvQfHPE~~~~~~ 177 (184)
T TIGR03800 133 IRAPKIVSVGNGVEILAKVGNRIVAVRQGNILVSSFHPELTDDHR 177 (184)
T ss_pred EcCCCcccCCCCeEEEEEeCCeeEEEEeCCEEEEEeCCccCCCch
Confidence 45555667999999999333466677777 99999999644444
No 77
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.45 E-value=0.0014 Score=70.81 Aligned_cols=54 Identities=7% Similarity=-0.085 Sum_probs=38.3
Q ss_pred HhhcccccccCCCc-eEEee---cCCCceeeeccC--CCCCCCCCC--ccccc-HHHHHHHHh
Q 013432 23 NTFWPLLMRALPPD-VIFIA---DPEGSIMGGGGS--IGPHYSGND--PREMR-LVGALREVL 76 (443)
Q Consensus 23 ~ryhsl~~~~lp~~-~~~~a---~~~~~im~~~h~--~g~qfhpes--~~G~~-l~~~L~kl~ 76 (443)
-++||..+..+|.. ..+.+ ..++.|++++|. ||+|||||. +.|.. +++|++.+.
T Consensus 149 y~vHSy~v~~~p~~~~~v~a~~~~g~~~IaAI~~gnI~GVQFHPE~s~~~G~~L~~nFl~~~~ 211 (538)
T PLN02617 149 YFVHSYRATPSDENKDWVLATCNYGGEFIASVRKGNVHAVQFHPEKSGATGLSILRRFLEPKS 211 (538)
T ss_pred EEEeEEEEEecCCCCcEEEEEEccCCCcEEEEEeCCEEEEEcCCccCchhHHHHHHHHHHhhh
Confidence 36788876656643 22333 345789999998 999999997 56666 888877655
No 78
>PRK07053 glutamine amidotransferase; Provisional
Probab=96.43 E-value=0.0025 Score=61.94 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=33.3
Q ss_pred HHhhcccccccCCCceEEee-cCCCceeeeccC---CCCCCCCCC
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGND 62 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~---~g~qfhpes 62 (443)
..++|+..+ +||+..++.| ++.+.+.+++.. ||+|||||.
T Consensus 137 ~~~~H~d~~-~lP~ga~~La~s~~~~~qaf~~g~~~~g~QfHpE~ 180 (234)
T PRK07053 137 VLHWHGDTF-DLPEGATLLASTPACRHQAFAWGNHVLALQFHPEA 180 (234)
T ss_pred EEEEeCCEE-ecCCCCEEEEcCCCCCeeEEEeCCCEEEEeeCccC
Confidence 445677665 6999999999 788888999874 999999997
No 79
>PRK08250 glutamine amidotransferase; Provisional
Probab=96.38 E-value=0.0014 Score=63.55 Aligned_cols=40 Identities=10% Similarity=-0.091 Sum_probs=33.8
Q ss_pred HHhhcccccccCCCceEEee-cCCCceeeeccC---CCCCCCCCC
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGND 62 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~---~g~qfhpes 62 (443)
+.++|... ..||+..++.| ++.+.+++++.. ||+|||||-
T Consensus 139 v~~~H~d~-~~lP~~a~~LA~s~~~~~qa~~~~~~~~g~QfHPE~ 182 (235)
T PRK08250 139 VGHWHNDM-PGLTDQAKVLATSEGCPRQIVQYSNLVYGFQCHMEF 182 (235)
T ss_pred EEEEecce-ecCCCCCEEEECCCCCCceEEEeCCCEEEEeecCcC
Confidence 44677765 36999999999 888899999985 999999996
No 80
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=96.10 E-value=0.0034 Score=58.48 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=31.0
Q ss_pred hcccccccCCCceEEee-cCCCceeeeccC--CCCCCCCCCcccccH
Q 013432 25 FWPLLMRALPPDVIFIA-DPEGSIMGGGGS--IGPHYSGNDPREMRL 68 (443)
Q Consensus 25 yhsl~~~~lp~~~~~~a-~~~~~im~~~h~--~g~qfhpes~~G~~l 68 (443)
.|.-.+..+|+.++++| ++++.+ +++.+ +|+|||||-.....+
T Consensus 133 ~h~~~v~~~p~~~~~la~~~~~~~-a~~~~~~~g~qfHPE~~~~~~~ 178 (183)
T cd01749 133 IRAPVIEEVGPGVEVLAEYDGKIV-AVRQGNVLATSFHPELTDDTRI 178 (183)
T ss_pred EECcEEEEcCCCcEEEEecCCEEE-EEEECCEEEEEcCCccCCCcch
Confidence 34445567999999999 655444 77766 999999997544443
No 81
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=95.26 E-value=0.0081 Score=58.40 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=31.1
Q ss_pred Hhhcccccc-----cC-CCceEEee-cC-CCceeeeccC----C-CCCCCCCC
Q 013432 23 NTFWPLLMR-----AL-PPDVIFIA-DP-EGSIMGGGGS----I-GPHYSGND 62 (443)
Q Consensus 23 ~ryhsl~~~-----~l-p~~~~~~a-~~-~~~im~~~h~----~-g~qfhpes 62 (443)
+.+|...++ .+ ...|.+++ +. ||.|-|++++ + |||||||-
T Consensus 168 n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~ 220 (235)
T cd01746 168 RHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEF 220 (235)
T ss_pred ecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCC
Confidence 345776553 33 57899999 66 8999999986 5 99999996
No 82
>PRK06186 hypothetical protein; Validated
Probab=95.23 E-value=0.017 Score=55.89 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=31.7
Q ss_pred CCceEEee-cCCCceeeecc---C--CCCCCCCCC--c-c-ccc-HHHHHHHH
Q 013432 34 PPDVIFIA-DPEGSIMGGGG---S--IGPHYSGND--P-R-EMR-LVGALREV 75 (443)
Q Consensus 34 p~~~~~~a-~~~~~im~~~h---~--~g~qfhpes--~-~-G~~-l~~~L~kl 75 (443)
.+.|.++| ++||.|.+++. + .|||||||- . . ... ++.|++..
T Consensus 174 ~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv~aa 226 (229)
T PRK06186 174 SGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFLRAA 226 (229)
T ss_pred cCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHHHHH
Confidence 56899999 89999999985 4 899999994 2 2 123 67776654
No 83
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.09 E-value=0.014 Score=55.13 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=32.2
Q ss_pred hcccccccCCCceEEeecCCC-ceeeeccC--CCCCCCCCC--ccccc-HHHHHHH
Q 013432 25 FWPLLMRALPPDVIFIADPEG-SIMGGGGS--IGPHYSGND--PREMR-LVGALRE 74 (443)
Q Consensus 25 yhsl~~~~lp~~~~~~a~~~~-~im~~~h~--~g~qfhpes--~~G~~-l~~~L~k 74 (443)
.||-.+. .++...+++.-++ .+-++++. +|+|||||- +.|.. ++||++-
T Consensus 133 VhSy~v~-~~~~v~~~~~yg~~~~~~v~~~n~~g~QFHPEkS~~~G~~ll~nf~~~ 187 (192)
T PRK13142 133 VHSYQAP-MSENVIAYAQYGADIPAIVQFNNYIGIQFHPEKSGTYGLQILRQAIQG 187 (192)
T ss_pred ECCCeEC-CCCCEEEEEECCCeEEEEEEcCCEEEEecCcccCcHhHHHHHHHHHhc
Confidence 4666553 2444445552223 46667666 999999996 77888 8888754
No 84
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=94.42 E-value=0.023 Score=53.64 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=18.9
Q ss_pred CCCCCCCCC--ccccc-HHHHHHHH
Q 013432 54 IGPHYSGND--PREMR-LVGALREV 75 (443)
Q Consensus 54 ~g~qfhpes--~~G~~-l~~~L~kl 75 (443)
+|+|||||- .-|+. ++||++.+
T Consensus 179 ~g~QFHPEKSg~~Gl~lL~NFl~~~ 203 (204)
T COG0118 179 FGTQFHPEKSGKAGLKLLKNFLEWI 203 (204)
T ss_pred EEEecCcccchHHHHHHHHHHHhhc
Confidence 999999994 78998 99998753
No 85
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=94.18 E-value=0.012 Score=56.81 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=24.0
Q ss_pred CceeeeccC----CCCCCCCCC--------ccccc-HHHHHH
Q 013432 45 GSIMGGGGS----IGPHYSGND--------PREMR-LVGALR 73 (443)
Q Consensus 45 ~~im~~~h~----~g~qfhpes--------~~G~~-l~~~L~ 73 (443)
..|||+.|+ +|+|||||+ +.|+. ++++++
T Consensus 184 ~~i~~i~~~~~~~~g~~~HpE~~~~~~~~~~~g~~~~~~~~~ 225 (227)
T TIGR01737 184 GNIAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLVE 225 (227)
T ss_pred HHHcccCCCCCCEEEEecCchhhcccccCCcccHHHHHHHHh
Confidence 489999997 999999998 46776 777764
No 86
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=93.25 E-value=0.055 Score=58.27 Aligned_cols=28 Identities=7% Similarity=0.008 Sum_probs=24.0
Q ss_pred CceEEee-cCC-CceeeeccC-----CCCCCCCCC
Q 013432 35 PDVIFIA-DPE-GSIMGGGGS-----IGPHYSGND 62 (443)
Q Consensus 35 ~~~~~~a-~~~-~~im~~~h~-----~g~qfhpes 62 (443)
+.|+++| ++| |.|.|++++ .|||||||-
T Consensus 474 ~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~ 508 (525)
T TIGR00337 474 KGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEF 508 (525)
T ss_pred CCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCC
Confidence 6799999 766 689999975 599999996
No 87
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=93.16 E-value=0.078 Score=54.11 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=35.0
Q ss_pred cccccc--cCCCceEEee--cCCCceeeeccC----CCCCCCCCCccc-c--c--HHHHHHHH
Q 013432 26 WPLLMR--ALPPDVIFIA--DPEGSIMGGGGS----IGPHYSGNDPRE-M--R--LVGALREV 75 (443)
Q Consensus 26 hsl~~~--~lp~~~~~~a--~~~~~im~~~h~----~g~qfhpes~~G-~--~--l~~~L~kl 75 (443)
|.-.|+ ++++..++|. -.||.+.|++|+ +-||||||+..| + . +.+|++.+
T Consensus 300 HGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~ 362 (368)
T COG0505 300 HGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIELM 362 (368)
T ss_pred CceecChhhcCCCceeEEEeCCCCCccceecCCCceEEEccCCCCCCCCcccHHHHHHHHHHH
Confidence 444554 4666546776 589999999998 999999998332 2 2 55666544
No 88
>PRK05380 pyrG CTP synthetase; Validated
Probab=92.30 E-value=0.082 Score=56.99 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=30.6
Q ss_pred CceEEee-cCC-CceeeeccC-----CCCCCCCCC---c-cccc-HHHHHHHHh
Q 013432 35 PDVIFIA-DPE-GSIMGGGGS-----IGPHYSGND---P-REMR-LVGALREVL 76 (443)
Q Consensus 35 ~~~~~~a-~~~-~~im~~~h~-----~g~qfhpes---~-~G~~-l~~~L~kl~ 76 (443)
..|.++| ++| |.|.+++++ .|||||||- + .+.. +..|++...
T Consensus 474 ~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~ 527 (533)
T PRK05380 474 AGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAAL 527 (533)
T ss_pred cCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHH
Confidence 3799999 755 589999975 599999995 2 2333 777776654
No 89
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.15 E-value=1.7 Score=42.58 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCC
Q 013432 80 HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN 159 (443)
Q Consensus 80 ~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~ 159 (443)
-|+.+|-+.+++.=- .-+++-..+ +|.+|.+-.|-|.---.=++.++- ...+.-+=|+||..+
T Consensus 75 GLs~eelE~la~~~~-------a~KvsrrDl-~~vvA~~~~gaTTVAaTMi~A~~a---------GI~vfaTGGiGGVHr 137 (310)
T COG2313 75 GLSKEELELLAREGN-------AMKVSRRDL-PFVVAEGKNGATTVAATMILAALA---------GIKVFATGGIGGVHR 137 (310)
T ss_pred ecCHHHHHHHhhcCc-------cceeeccch-HHHHhcCcCCcchHHHHHHHHHHc---------CceEEEecCcccccC
Confidence 477777776665432 234444444 467777777765322211221111 111223345666555
Q ss_pred C---ccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHH
Q 013432 160 T---RFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 236 (443)
Q Consensus 160 ~---t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa 236 (443)
. ||-||.=| .=+|..++-|+--|.+++=.- |-| -++||..|+|+ +|| ...-.|+
T Consensus 138 GAe~t~DISaDL--~ELa~T~v~vV~AGaKsILDi-~~T-lE~LET~gVPv---------------vg~----~t~~fPa 194 (310)
T COG2313 138 GAEHTFDISADL--TELARTNVTVVCAGAKSILDI-GLT-LEVLETQGVPV---------------VGY----QTNEFPA 194 (310)
T ss_pred CcccccccchhH--HHHhcCCeEEEecCchhhhcc-HHH-HHHHHhcCcce---------------eec----CCCcccc
Confidence 5 67776542 245677788888887777654 333 67888888876 333 3444565
Q ss_pred hHHHHhhhcccCCCCCC--CCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEe
Q 013432 237 LYSLIGLREHIKKRPPV--ATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVK 300 (443)
Q Consensus 237 ~~~l~~vR~~Lg~RtPL--~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~ 300 (443)
+.. |+-|++.|| .+|+. ...+..+...+|.+..++|-
T Consensus 195 F~s-----R~Sg~~~pl~l~~pe~----------------------ia~~~~t~~~lglegg~lVa 233 (310)
T COG2313 195 FFS-----RESGFRVPLRLESPEE----------------------IARILATKWQLGLEGGLLVA 233 (310)
T ss_pred hhc-----ccCCCcCccccCCHHH----------------------HHHHHHHHHHhCCCCceEEe
Confidence 443 456777664 44443 33455666778876666654
No 90
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=90.12 E-value=0.52 Score=44.71 Aligned_cols=92 Identities=9% Similarity=-0.026 Sum_probs=62.9
Q ss_pred HHHHHhhcccccccCCCceEEee-cCCCceeeeccC---CCCCCCCCCccccc-HHHHHHHHhcCCCCCHHHHHHHHHHh
Q 013432 19 RRAMNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGNDPREMR-LVGALREVLAGGHLGYEEVQGVLRDV 93 (443)
Q Consensus 19 ~~~~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~---~g~qfhpes~~G~~-l~~~L~kl~~g~~Lt~eEa~~~~~~i 93 (443)
.-.|..-|+..|-.+|+..++.| ++++++..+.-. .++|-|||= ... +...+.++...+..+.+-++.+-..+
T Consensus 147 ~l~IikcHqDevle~PE~a~llasSe~ceve~fs~~~~~l~fQGHPEy--n~eil~~ivdrv~~~k~~~eef~~~ak~~~ 224 (245)
T KOG3179|consen 147 SLNIIKCHQDEVLELPEGAELLASSEKCEVEMFSIEDHLLCFQGHPEY--NKEILFEIVDRVLGTKLVEEEFAEKAKKTM 224 (245)
T ss_pred hhhHHhhcccceecCCchhhhhccccccceEEEEecceEEEecCCchh--hHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 34567789988889999999999 888776655443 999999994 223 44566666666666666666666655
Q ss_pred cCCcCCCCCCCCCHHHHHHHHHHHHhc
Q 013432 94 LPLQVDNKAPGVSESLLSAFLIGQRMN 120 (443)
Q Consensus 94 l~~~~~~~~g~~~~~qigAfL~alr~K 120 (443)
....++.|++--+-=.-.|
T Consensus 225 --------En~~~d~~~~~~icKnfLk 243 (245)
T KOG3179|consen 225 --------ENPEPDRQLAVSICKNFLK 243 (245)
T ss_pred --------hCCCccHHHHHHHHHHHhc
Confidence 4556677766544433333
No 91
>PLN02327 CTP synthase
Probab=89.68 E-value=0.27 Score=53.32 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=31.5
Q ss_pred ccC-CCceEEee-cCCC-ceeeeccC----C-CCCCCCCC---cccc-c-HHHHHHHHh
Q 013432 31 RAL-PPDVIFIA-DPEG-SIMGGGGS----I-GPHYSGND---PREM-R-LVGALREVL 76 (443)
Q Consensus 31 ~~l-p~~~~~~a-~~~~-~im~~~h~----~-g~qfhpes---~~G~-~-l~~~L~kl~ 76 (443)
+.| -..|.+++ ++|| .|.+++|+ + |||||||- +... . +..|++...
T Consensus 489 ~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~Aa~ 547 (557)
T PLN02327 489 PRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAAS 547 (557)
T ss_pred HHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHHHHHHHHHHH
Confidence 345 36799999 7777 57788665 4 99999995 2222 2 677776654
No 92
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=88.40 E-value=3.5 Score=32.68 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLA 133 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A 133 (443)
++++|+++-+|. +.++.+.-|...+ +.+++.+|+..=-.|=--|.+++|+..+++.
T Consensus 2 LK~ii~~Lh~G~--~~e~vk~~F~~~~--------~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCdv 57 (71)
T PF04282_consen 2 LKEIIKRLHEGE--DPEEVKEEFKKLF--------SDVSASEISAAEQELIQEGMPVEEIQKLCDV 57 (71)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHhHH
Confidence 688999999997 7899999999999 7899999999988887899999999998653
No 93
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.30 E-value=14 Score=39.13 Aligned_cols=206 Identities=13% Similarity=0.049 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHhcCCCCC
Q 013432 68 LVGALREVLAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDR--ELKAYCLAFDDELGPPP 142 (443)
Q Consensus 68 l~~~L~kl~~g~---~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~e--Elag~~~A~~~~~~~~~ 142 (443)
+++.|.....+. ....+....+.+.++ .-.+++.-+-.++..++-+....+ -...+.+.+.+.....+
T Consensus 142 lk~~l~~~~~~~~~~~~~~~~~~~~~~~L~-------~~gv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 214 (424)
T PRK05703 142 LKNLLEDQLSGLRQVERIPPEFAELYKRLK-------RSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRV 214 (424)
T ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCccc
Confidence 666666655442 223444566667777 778889888888888766654433 33444455544322111
Q ss_pred ---CCCCCCceEEcCCCCCCCccccchHHHHHHH-hcCCCeEEeecCCCCCCCCCCcHHHHH----HhCCCCC--CCCHH
Q 013432 143 ---VADVKSLTHYGEPYDGNTRFFRSTLFVAAVR-SCYGESCLLHGAEWMPPKGGVTEEQML----KFMGAST--NLSVL 212 (443)
Q Consensus 143 ---~~~~~~vD~~GtggDG~~t~nisT~l~A~vl-Aa~Gv~V~kHGnr~~ssk~Gs~~aDvL----eaLGi~i--~~s~~ 212 (443)
......+-++|++|.|+.|+-... ++... -..|.+|+.-..+. -+.|. .+-| +.+|+++ ..+++
T Consensus 215 ~~~~~~~~~i~~vGptGvGKTTt~~kL--A~~~~~~~~g~~V~li~~D~--~r~~a--~eqL~~~a~~~~vp~~~~~~~~ 288 (424)
T PRK05703 215 EDILKQGGVVALVGPTGVGKTTTLAKL--AARYALLYGKKKVALITLDT--YRIGA--VEQLKTYAKIMGIPVEVVYDPK 288 (424)
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHH--HHHHHHhcCCCeEEEEECCc--cHHHH--HHHHHHHHHHhCCceEccCCHH
Confidence 111236778999999998633221 22222 24567777654432 23343 3433 3477774 46777
Q ss_pred HHHHHHHhc-CceeEEeccchhcHHh-HHHHhhhcccC-CCCCCCCchhhhhhhhccCCCeEEEee-cCCCchHHHHHHH
Q 013432 213 QAKELLEDE-EIGFAYVSLREARPSL-YSLIGLREHIK-KRPPVATSEKVQQFVRAQGREAIVAGF-YHEGYEEPLLMLM 288 (443)
Q Consensus 213 ~~~~~Le~~-g~gf~fl~a~~~~Pa~-~~l~~vR~~Lg-~RtPL~np~~~~~~lnp~~~~~~v~GV-~h~~~~~~~a~~l 288 (443)
+....|++. +.-+++++.+-+.|.. ..+..+++-+. .+.|+. .+.|+.- +.+.-+..+.+.+
T Consensus 289 ~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~--------------~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 289 ELAKALEQLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPID--------------VYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred hHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCe--------------EEEEEECCCCHHHHHHHHHHh
Confidence 777777653 4667888887666552 22233444333 111211 1334443 2333445555666
Q ss_pred HHcCCceEEEEe
Q 013432 289 KRRGVHSGLVVK 300 (443)
Q Consensus 289 ~~lG~~~alVv~ 300 (443)
..++..+.++-+
T Consensus 355 ~~~~~~~vI~TK 366 (424)
T PRK05703 355 SRLPLDGLIFTK 366 (424)
T ss_pred CCCCCCEEEEec
Confidence 777775444433
No 94
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.30 E-value=39 Score=35.81 Aligned_cols=179 Identities=11% Similarity=0.079 Sum_probs=96.4
Q ss_pred CCCCCHHHHHHHHHHHHh--cCC---CHHHHHHHH-HHHHhcCCCC-CC-CCCCCceEEcCCCCCCCccccchHHHHHHH
Q 013432 102 APGVSESLLSAFLIGQRM--NRE---TDRELKAYC-LAFDDELGPP-PV-ADVKSLTHYGEPYDGNTRFFRSTLFVAAVR 173 (443)
Q Consensus 102 ~g~~~~~qigAfL~alr~--Kge---T~eElag~~-~A~~~~~~~~-~~-~~~~~vD~~GtggDG~~t~nisT~l~A~vl 173 (443)
+.++++.-+-.++-.+.. +.. +.+++..++ +.+....... .. ..+..|-++|.+|.|+.|+-. ..|.-+
T Consensus 189 ~~dV~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTia---KLA~~L 265 (436)
T PRK11889 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLA---KMAWQF 265 (436)
T ss_pred HCCCCHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHH---HHHHHH
Confidence 566777766666665532 222 444444433 2222222111 11 112367789999999986322 122234
Q ss_pred hcCCCeEEeecCCCCCCCCCCcHHHHH---HhCCCCC--CCCHHHHHHHHHhc----CceeEEeccchhcHH-hHHHHhh
Q 013432 174 SCYGESCLLHGAEWMPPKGGVTEEQML---KFMGAST--NLSVLQAKELLEDE----EIGFAYVSLREARPS-LYSLIGL 243 (443)
Q Consensus 174 Aa~Gv~V~kHGnr~~ssk~Gs~~aDvL---eaLGi~i--~~s~~~~~~~Le~~----g~gf~fl~a~~~~Pa-~~~l~~v 243 (443)
...|.+|..--.+ +-+.|+ ..++- +.+|+++ ..+++.+.+.++.. +.-+++++.+--++. ...+..+
T Consensus 266 ~~~GkkVglI~aD--t~RiaA-vEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL 342 (436)
T PRK11889 266 HGKKKTVGFITTD--HSRIGT-VQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEM 342 (436)
T ss_pred HHcCCcEEEEecC--CcchHH-HHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHH
Confidence 5668888865544 333344 12322 3478885 46888888888543 357788887655443 3335555
Q ss_pred hcccCCCCCCCCchhhhhhhhccCCCeEEEeec-CCCchHHHHHHHHHcCCceEEEEe
Q 013432 244 REHIKKRPPVATSEKVQQFVRAQGREAIVAGFY-HEGYEEPLLMLMKRRGVHSGLVVK 300 (443)
Q Consensus 244 R~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~-h~~~~~~~a~~l~~lG~~~alVv~ 300 (443)
++.+....|-.+ +.|+... ...-+...++.+..+++.+.++-+
T Consensus 343 ~~~lk~~~Pdev--------------lLVLsATtk~~d~~~i~~~F~~~~idglI~TK 386 (436)
T PRK11889 343 IETMGQVEPDYI--------------CLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 386 (436)
T ss_pred HHHHhhcCCCeE--------------EEEECCccChHHHHHHHHHhcCCCCCEEEEEc
Confidence 665554334321 4555542 223335566677778886555544
No 95
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=74.63 E-value=2.7 Score=42.56 Aligned_cols=47 Identities=11% Similarity=-0.029 Sum_probs=33.6
Q ss_pred CCCceEEee-cCCCceeeecc---C-CCCCCCCCCcccccHHHHHHHHhcCC
Q 013432 33 LPPDVIFIA-DPEGSIMGGGG---S-IGPHYSGNDPREMRLVGALREVLAGG 79 (443)
Q Consensus 33 lp~~~~~~a-~~~~~im~~~h---~-~g~qfhpes~~G~~l~~~L~kl~~g~ 79 (443)
+|+.++|.| +++.-+.+++- + +++|+|||=...--.+++.+-+.+|.
T Consensus 204 ~~~~l~vLA~S~~~gv~~~~~~~~r~~~vQgHPEYd~~tL~~EY~RD~~~~~ 255 (302)
T PRK05368 204 AATGLEILAESEEAGVYLFASKDKREVFVTGHPEYDADTLAQEYFRDLGAGL 255 (302)
T ss_pred cCCCCEEEecCCCCCeEEEEeCCCCEEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 789999999 77766666633 3 99999999644444556666666664
No 96
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=74.41 E-value=3 Score=44.52 Aligned_cols=43 Identities=19% Similarity=0.426 Sum_probs=28.2
Q ss_pred CceEEee-cCCCc-eeeecc---C--CCCCCCCC--C-c-cccc-HHHHHHHHhc
Q 013432 35 PDVIFIA-DPEGS-IMGGGG---S--IGPHYSGN--D-P-REMR-LVGALREVLA 77 (443)
Q Consensus 35 ~~~~~~a-~~~~~-im~~~h---~--~g~qfhpe--s-~-~G~~-l~~~L~kl~~ 77 (443)
..|.+.+ +.||. +-.++. + .|+||||| | | .+.. +..|++....
T Consensus 474 ~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~ 528 (533)
T COG0504 474 AGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALE 528 (533)
T ss_pred CCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHH
Confidence 3688888 77764 334443 3 89999999 4 2 2333 7888876543
No 97
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=74.23 E-value=1.3e+02 Score=32.16 Aligned_cols=136 Identities=15% Similarity=0.051 Sum_probs=74.6
Q ss_pred CceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHH----HhCCCCCCC--CHHHHHHHHHhc
Q 013432 148 SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGASTNL--SVLQAKELLEDE 221 (443)
Q Consensus 148 ~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvL----eaLGi~i~~--s~~~~~~~Le~~ 221 (443)
.+-++|++|.|+.|+-.- +++......|.+|..-..+.. +.++ .+.| +.+|+++.. ++.++.+.+++.
T Consensus 225 vi~lvGptGvGKTTtaaK--LA~~~~~~~G~~V~Lit~Dt~--R~aA--~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~ 298 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAK--LAAKYFLHMGKSVSLYTTDNY--RIAA--IEQLKRYADTMGMPFYPVKDIKKFKETLARD 298 (432)
T ss_pred EEEEECCCCCCHHHHHHH--HHHHHHHhcCCeEEEecccch--hhhH--HHHHHHHHHhcCCCeeehHHHHHHHHHHHhC
Confidence 467899999999863221 233223456888887665542 2333 3333 457887542 255666666655
Q ss_pred CceeEEeccchhcHH-hHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEee-cCCCchHHHHHHHHHcCCceEEEE
Q 013432 222 EIGFAYVSLREARPS-LYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGF-YHEGYEEPLLMLMKRRGVHSGLVV 299 (443)
Q Consensus 222 g~gf~fl~a~~~~Pa-~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV-~h~~~~~~~a~~l~~lG~~~alVv 299 (443)
+.-+++++.+-+.|. ...+-.+.+.+..-.+....+ .+.|+.. +...-...+++.++.+|+++.++-
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e-----------~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlT 367 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVE-----------NLLVLSSTSSYHHTLTVLKAYESLNYRRILLT 367 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCe-----------EEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 677788887766542 333333444333221111111 1445443 333355666677778888666665
Q ss_pred e
Q 013432 300 K 300 (443)
Q Consensus 300 ~ 300 (443)
|
T Consensus 368 K 368 (432)
T PRK12724 368 K 368 (432)
T ss_pred c
Confidence 5
No 98
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.07 E-value=18 Score=34.66 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=55.7
Q ss_pred CCCCCCC-CCcccc--c-HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 013432 54 IGPHYSG-NDPREM--R-LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKA 129 (443)
Q Consensus 54 ~g~qfhp-es~~G~--~-l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag 129 (443)
.+.|||| ++++-+ . ++-.|..-..-.|++..|-..+|..+-. +| .|.|..+||..--.+-.+++||+.
T Consensus 96 ~~~~~~p~~~~d~~s~~ll~AmIaAAkaDGhIDe~ERa~I~~~l~e------sG--~d~e~~~~le~El~~PlD~~~ia~ 167 (225)
T COG2979 96 ADSQFTPLATEDEFSLTLLRAMIAAAKADGHIDEKERARIMQKLQE------SG--VDPEAQAFLEQELEQPLDPDEIAA 167 (225)
T ss_pred ccCCCCCccccchHHHHHHHHHHHHHhhcCCcCHHHHHHHHHHHHH------cC--CCHHHHHHHHHHHhCCCCHHHHHH
Confidence 6789999 664443 3 5556666666779999999999988852 33 678888999998889999999998
Q ss_pred HHH
Q 013432 130 YCL 132 (443)
Q Consensus 130 ~~~ 132 (443)
+++
T Consensus 168 ~a~ 170 (225)
T COG2979 168 AAR 170 (225)
T ss_pred Hhc
Confidence 864
No 99
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=68.02 E-value=3.9 Score=40.18 Aligned_cols=32 Identities=9% Similarity=0.031 Sum_probs=24.0
Q ss_pred CceeeeccC--CCCCCCCCCccccc-HHHHHHHHh
Q 013432 45 GSIMGGGGS--IGPHYSGNDPREMR-LVGALREVL 76 (443)
Q Consensus 45 ~~im~~~h~--~g~qfhpes~~G~~-l~~~L~kl~ 76 (443)
+.+.+++.. +|.|||||=....+ .++|++.+.
T Consensus 181 ~~~~aV~qgnvlatqFHPEls~d~rih~~Fl~~~~ 215 (248)
T PLN02832 181 KVIVAVKQGNLLATAFHPELTADTRWHSYFVKMVS 215 (248)
T ss_pred ceEEEEEeCCEEEEEccCccCCccHHHHHHHHHHH
Confidence 568888887 99999999533335 788888764
No 100
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=66.61 E-value=19 Score=37.31 Aligned_cols=101 Identities=17% Similarity=0.071 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCC----Ccccc---chH--HHH
Q 013432 107 ESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN----TRFFR---STL--FVA 170 (443)
Q Consensus 107 ~~qigAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~----~t~ni---sT~--l~A 170 (443)
..|..+++.|....|.+ .+++....++|++....+...+ ..+-+-|.|..+. +.+++ ++. +.+
T Consensus 12 S~~~~~L~~a~la~g~~~i~~~~~~~dv~~t~~~L~~lG~~i~~~~-~~~~v~g~~~~~~~~~~~~~~~g~s~~~~~~l~ 90 (408)
T cd01554 12 SISHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKD-GVITIQGVGMAGLKAPQNALNLGNSGTAIRLIS 90 (408)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCCccHHHHHHHHHHHHcCCeEEecC-CEEEEEecCCCCCCCCCceEEccCccHHHHHHH
Confidence 34457777777777754 5788889999998876654322 2223334433211 12222 122 233
Q ss_pred HHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 013432 171 AVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 171 ~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~ 208 (443)
.+++..+.+|...|....+.+.-..+.|+|+++|+++.
T Consensus 91 a~~~~~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~ 128 (408)
T cd01554 91 GVLAGADFEVELFGDDSLSKRPMDRVTLPLKKMGASIS 128 (408)
T ss_pred HHHHcCCCeEEEECCchhhcCChHHHHHHHHHCCCEEE
Confidence 33444456888899988877755556899999999874
No 101
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.47 E-value=57 Score=34.39 Aligned_cols=138 Identities=7% Similarity=0.070 Sum_probs=84.5
Q ss_pred HHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhc--C---CCHHHHHHHHHHHHhcCCCCC----CCCCCCceEEcCCC
Q 013432 86 VQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--R---ETDRELKAYCLAFDDELGPPP----VADVKSLTHYGEPY 156 (443)
Q Consensus 86 a~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~K--g---eT~eElag~~~A~~~~~~~~~----~~~~~~vD~~Gtgg 156 (443)
..++.+.+. ...+++.-+-.++-.++-. . .+.+++...+........+++ ......+-++|+.|
T Consensus 144 ~~~~~~~L~-------~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptG 216 (407)
T PRK12726 144 NSDFVKFLK-------GRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTG 216 (407)
T ss_pred cHHHHHHHH-------HcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCC
Confidence 346666776 7788888888888877544 2 345666555544433333221 11234677899999
Q ss_pred CCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHh----CCCCC--CCCHHHHHHHHHhc----CceeE
Q 013432 157 DGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKF----MGAST--NLSVLQAKELLEDE----EIGFA 226 (443)
Q Consensus 157 DG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLea----LGi~i--~~s~~~~~~~Le~~----g~gf~ 226 (443)
.|+.|+-.- .|..+...|.+|..--.+ +-++|. .+-|.. +|+++ ..+|+++.+.++.. +.-++
T Consensus 217 vGKTTt~ak---LA~~l~~~g~~V~lItaD--tyR~gA--veQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~V 289 (407)
T PRK12726 217 VGKTTTLVK---LGWQLLKQNRTVGFITTD--TFRSGA--VEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHI 289 (407)
T ss_pred CCHHHHHHH---HHHHHHHcCCeEEEEeCC--ccCccH--HHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEE
Confidence 998862221 122234568888876655 334555 444443 78774 47888888877753 35678
Q ss_pred EeccchhcHHh
Q 013432 227 YVSLREARPSL 237 (443)
Q Consensus 227 fl~a~~~~Pa~ 237 (443)
+++.+-.+|..
T Consensus 290 LIDTAGr~~~d 300 (407)
T PRK12726 290 LIDTVGRNYLA 300 (407)
T ss_pred EEECCCCCccC
Confidence 88887766643
No 102
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=66.14 E-value=1.4e+02 Score=31.81 Aligned_cols=159 Identities=18% Similarity=0.143 Sum_probs=85.6
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHh--cCC------CH-HH-HHHHHHHHHh
Q 013432 67 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRM--NRE------TD-RE-LKAYCLAFDD 136 (443)
Q Consensus 67 ~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~--Kge------T~-eE-lag~~~A~~~ 136 (443)
++.+.++++.....||.+...++++.|-..++ +-+++..-.-.|+-.++- .|+ ++ +. +.-..+.+.+
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl---~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ 80 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALL---QADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHH
Confidence 47888999887778999865554444321111 577888888888887753 332 22 22 2222223322
Q ss_pred cCCC----CCCC-CCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHH----HhCCCCC
Q 013432 137 ELGP----PPVA-DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGAST 207 (443)
Q Consensus 137 ~~~~----~~~~-~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvL----eaLGi~i 207 (443)
.... ...+ .+..+-.||.+|.|+.|+- .-.|.-+...|.+|..-..+...+ +. .|.| +.+|+++
T Consensus 81 ~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTta---akLA~~L~~~g~kV~lV~~D~~R~--aa--~eQL~~la~~~gvp~ 153 (437)
T PRK00771 81 LLGEETEPLVLPLKPQTIMLVGLQGSGKTTTA---AKLARYFKKKGLKVGLVAADTYRP--AA--YDQLKQLAEKIGVPF 153 (437)
T ss_pred HhCCCccccccCCCCeEEEEECCCCCcHHHHH---HHHHHHHHHcCCeEEEecCCCCCH--HH--HHHHHHHHHHcCCcE
Confidence 2211 1111 1236778999999998632 223344556788888765554322 32 3433 4467764
Q ss_pred CC-----CHHH-HHHHHHhc-CceeEEeccchhcH
Q 013432 208 NL-----SVLQ-AKELLEDE-EIGFAYVSLREARP 235 (443)
Q Consensus 208 ~~-----s~~~-~~~~Le~~-g~gf~fl~a~~~~P 235 (443)
.. ++.+ +.+.++.. ..-++.++.+--++
T Consensus 154 ~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 154 YGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHA 188 (437)
T ss_pred EecCCccCHHHHHHHHHHHhhcCCEEEEECCCccc
Confidence 32 2222 33334331 13456676654444
No 103
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=64.66 E-value=2.3e+02 Score=32.54 Aligned_cols=151 Identities=14% Similarity=0.048 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHhcCCCCC-----CCCCCCceEEcC
Q 013432 81 LGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCL-AFDDELGPPP-----VADVKSLTHYGE 154 (443)
Q Consensus 81 Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~-A~~~~~~~~~-----~~~~~~vD~~Gt 154 (443)
.......++.+.++ +-.+++.-.-.|+--+. ++.+.+++..++. .+.+...... +....++-.+|+
T Consensus 122 ~~~~~~~~l~~~Ll-------~~dv~~~la~~l~~~l~-~~~~~~~~~~~l~~~L~~~l~il~~~~~~~~~g~Vi~lVGp 193 (767)
T PRK14723 122 GRDPLRASLFRWLL-------GAGFSGQLARALLERLP-VGYDRPAAMAWIRNELATHLPVLRDEDALLAQGGVLALVGP 193 (767)
T ss_pred cChHHHHHHHHHHH-------HCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhhccCCCcccCCCeEEEEECC
Confidence 34333455677777 77888887777777664 3445666555443 3323221111 112236778999
Q ss_pred CCCCCCccccchHHHHHHHhcCC-CeEEeecCCCCCCCCCCcHHHHHH----hCCCCCC--CCHHHHHHHHHhc-CceeE
Q 013432 155 PYDGNTRFFRSTLFVAAVRSCYG-ESCLLHGAEWMPPKGGVTEEQMLK----FMGASTN--LSVLQAKELLEDE-EIGFA 226 (443)
Q Consensus 155 ggDG~~t~nisT~l~A~vlAa~G-v~V~kHGnr~~ssk~Gs~~aDvLe----aLGi~i~--~s~~~~~~~Le~~-g~gf~ 226 (443)
.|.||.|.-.- +++......| .+|..-..+ +.+.|+ .+-|. .+|+++. .+++++.+.+++. +.-++
T Consensus 194 nGvGKTTTiaK--LA~~~~~~~G~kkV~lit~D--t~RigA--~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~V 267 (767)
T PRK14723 194 TGVGKTTTTAK--LAARCVAREGADQLALLTTD--SFRIGA--LEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHLV 267 (767)
T ss_pred CCCcHHHHHHH--HHhhHHHHcCCCeEEEecCc--ccchHH--HHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCEE
Confidence 99999862111 2333323444 466654433 445555 45554 4788753 6888888888764 34678
Q ss_pred EeccchhcHHhHHHHhhhc
Q 013432 227 YVSLREARPSLYSLIGLRE 245 (443)
Q Consensus 227 fl~a~~~~Pa~~~l~~vR~ 245 (443)
+++.+-.+|....++..-+
T Consensus 268 LIDTAGRs~~d~~l~eel~ 286 (767)
T PRK14723 268 LIDTVGMSQRDRNVSEQIA 286 (767)
T ss_pred EEeCCCCCccCHHHHHHHH
Confidence 8888876665544444333
No 104
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=64.02 E-value=1.2e+02 Score=30.05 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhcCC--CC
Q 013432 68 LVGALREVLAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDREL-KAYCLAFDDELG--PP 141 (443)
Q Consensus 68 l~~~L~kl~~g~---~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eEl-ag~~~A~~~~~~--~~ 141 (443)
+++.|..+..+. .+ ..+...+.+.+. .-.+++.-.-.++--++-.. +.+++ ..+.+.+.+... +.
T Consensus 116 lk~~l~~~~~~~~~~~~-~~~l~~l~~~L~-------~~gv~~~la~~L~~~l~~~~-~~~~~~~~~~~~l~~~l~~~~~ 186 (282)
T TIGR03499 116 LRELLERLLAGLAWLQR-DPEGAKLLERLL-------RAGVSPELARELLEKLPERA-DAEDAWRWLREALEKMLPVKPE 186 (282)
T ss_pred HHHHHHHHHHhhhhccc-CHHHHHHHHHHH-------HCCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHHHHHhccCCc
Confidence 666676666542 22 245566777777 67788888888887776432 33333 334455544432 11
Q ss_pred --CC-CCCCCceEEcCCCCCCCccccchHHHHHHHhcCC-CeEEeecCCCCCCCCCCcHHHHH----HhCCCCC--CCCH
Q 013432 142 --PV-ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYG-ESCLLHGAEWMPPKGGVTEEQML----KFMGAST--NLSV 211 (443)
Q Consensus 142 --~~-~~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~G-v~V~kHGnr~~ssk~Gs~~aDvL----eaLGi~i--~~s~ 211 (443)
++ .....+-++|+.|.|+.|+-.- +++...-..| .+|..--.+. -+.|. .+-| +.+|+++ ..++
T Consensus 187 ~~~~~~~~~vi~~vGptGvGKTTt~~k--La~~~~~~~g~~~V~li~~D~--~r~~a--~eql~~~~~~~~~p~~~~~~~ 260 (282)
T TIGR03499 187 EDEILEQGGVIALVGPTGVGKTTTLAK--LAARFVLEHGNKKVALITTDT--YRIGA--VEQLKTYAKILGVPVKVARDP 260 (282)
T ss_pred cccccCCCeEEEEECCCCCCHHHHHHH--HHHHHHHHcCCCeEEEEECCc--cchhH--HHHHHHHHHHhCCceeccCCH
Confidence 11 1123677899999999863221 1222222224 7877766553 23333 3333 3367765 4567
Q ss_pred HHHHHHHHhcC-ceeEEec
Q 013432 212 LQAKELLEDEE-IGFAYVS 229 (443)
Q Consensus 212 ~~~~~~Le~~g-~gf~fl~ 229 (443)
.++.+.+++.. .-+++++
T Consensus 261 ~~l~~~l~~~~~~d~vliD 279 (282)
T TIGR03499 261 KELRKALDRLRDKDLILID 279 (282)
T ss_pred HHHHHHHHHccCCCEEEEe
Confidence 77777777632 3344443
No 105
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=59.26 E-value=4.7 Score=38.67 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=21.3
Q ss_pred CCC---ceeeeccC----CCCCCCCCC--------ccccc-HHHHHH
Q 013432 43 PEG---SIMGGGGS----IGPHYSGND--------PREMR-LVGALR 73 (443)
Q Consensus 43 ~~~---~im~~~h~----~g~qfhpes--------~~G~~-l~~~L~ 73 (443)
++| +|.++..+ +|+|||||. ..|+. +++|++
T Consensus 172 pngs~~~ia~i~~~~~~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 172 PNGSVNDIAGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred CCCCHHHhcccCCCCCCEEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 555 67777753 999999995 24555 666654
No 106
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=58.21 E-value=5.6 Score=37.34 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=47.5
Q ss_pred CccccCCCCCCCcccHHHHH--HHH-h--hccccc-----ccCCCceEEeecCCCceeeeccC--CCCCCCCCCcccccH
Q 013432 1 MTIRANAFPEATQWSEGERR--AMN-T--FWPLLM-----RALPPDVIFIADPEGSIMGGGGS--IGPHYSGNDPREMRL 68 (443)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~--~~~-r--yhsl~~-----~~lp~~~~~~a~~~~~im~~~h~--~g~qfhpes~~G~~l 68 (443)
||+|||+|-.-.+--|.+-. -+. . ++..-+ ..+-+..++.|+-|+.|.|.+.. .+.-||||=-...++
T Consensus 103 i~V~RNAfGRQ~dSFe~~~di~~~~~~~~~~avFIRAP~I~~vg~~V~vLa~l~~~iVav~qgn~LatsFHPELT~D~r~ 182 (194)
T COG0311 103 VTVRRNAFGRQVDSFETELDIEGFGLPFPFPAVFIRAPVIEEVGDGVEVLATLDGRIVAVKQGNILATSFHPELTDDTRL 182 (194)
T ss_pred EEEEccccccccccceeeEEeecccCCCcceEEEEEcceeehhcCcceEeeeeCCEEEEEEeCCEEEEecCccccCCccH
Confidence 58899999876665554221 111 1 222211 12223677777545677777776 899999997555577
Q ss_pred HHHHHHHhcC
Q 013432 69 VGALREVLAG 78 (443)
Q Consensus 69 ~~~L~kl~~g 78 (443)
.+|+.++..+
T Consensus 183 Heyf~~~v~~ 192 (194)
T COG0311 183 HEYFLDMVLG 192 (194)
T ss_pred HHHHHHHhhc
Confidence 7776665443
No 107
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=57.47 E-value=5.1 Score=40.95 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=37.1
Q ss_pred CCC-ceEEeecC---CCceeeeccC--CCCCCCCCC--ccccc-HHHHHHHHhcCCCCCHHHHHHHHH
Q 013432 33 LPP-DVIFIADP---EGSIMGGGGS--IGPHYSGND--PREMR-LVGALREVLAGGHLGYEEVQGVLR 91 (443)
Q Consensus 33 lp~-~~~~~a~~---~~~im~~~h~--~g~qfhpes--~~G~~-l~~~L~kl~~g~~Lt~eEa~~~~~ 91 (443)
+|+ .+++.-+. +--|-+++.. +..|||||- +-|.+ +++||. ..-+.+...|++.+|.
T Consensus 157 len~~wkiat~kYG~E~Fi~ai~knN~~AtQFHPEKSG~aGL~vl~~FL~--~~~ppips~e~~kl~e 222 (541)
T KOG0623|consen 157 LENKDWKIATCKYGSESFISAIRKNNVHATQFHPEKSGEAGLSVLRRFLH--QQSPPIPSAETQKLME 222 (541)
T ss_pred CCCCCceEeeeccCcHHHHHHHhcCceeeEecccccccchhHHHHHHHHh--ccCCCCCchhhhhhhh
Confidence 444 35554332 3357777776 999999995 78998 999997 3445565555555443
No 108
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=57.40 E-value=11 Score=36.22 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=54.9
Q ss_pred EEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHHhHHHHh---------hhcccCCC
Q 013432 180 CLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIG---------LREHIKKR 250 (443)
Q Consensus 180 V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa~~~l~~---------vR~~Lg~R 250 (443)
|...|+-+ |.||.. ..+|+++|+++ .+.+.+++..-+.|. |.|.+-...... =|+.||.+
T Consensus 4 VGLTGgia-tGKStV--s~~f~~~G~~v-IDaD~vaR~vv~PG~-------p~~~~ive~FG~eiLl~~G~inR~~LG~~ 72 (225)
T KOG3220|consen 4 VGLTGGIA-TGKSTV--SQVFKALGIPV-IDADVVAREVVEPGT-------PAYRRIVEAFGTEILLEDGEINRKVLGKR 72 (225)
T ss_pred EEeecccc-cChHHH--HHHHHHcCCcE-ecHHHHHHHHhcCCC-------hHHHHHHHHhCceeeccCCcccHHHHhHH
Confidence 45566655 556555 89999999997 466666666555442 223222211111 13344422
Q ss_pred CCCCCchhhhhhhhccCCCeEEEeecCCCchHHHH-HHHHH--cCCceEEEE
Q 013432 251 PPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLL-MLMKR--RGVHSGLVV 299 (443)
Q Consensus 251 tPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a-~~l~~--lG~~~alVv 299 (443)
-+++|.+-+ .+-++.||.....|. +.++. .|+ +.+|+
T Consensus 73 -vF~~~~~r~----------~Ln~IthP~Ir~em~ke~~~~~l~G~-r~ivl 112 (225)
T KOG3220|consen 73 -VFSDPKKRQ----------ALNKITHPAIRKEMFKEILKLLLRGY-RVIVL 112 (225)
T ss_pred -HhCCHHHHH----------HHHhcccHHHHHHHHHHHHHHHhcCC-eEEEE
Confidence 567777643 356788888776666 45543 354 44443
No 109
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=55.77 E-value=35 Score=35.46 Aligned_cols=104 Identities=11% Similarity=0.023 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCCC-------ccccchHH
Q 013432 103 PGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT-------RFFRSTLF 168 (443)
Q Consensus 103 g~~~~~qigAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~~-------t~nisT~l 168 (443)
|.-+ .+.++++.+...+|.| .+++...+++++.....+... ...+-+-|++..+.. +...|+.+
T Consensus 20 gsKS-s~~~ll~aa~la~g~s~i~n~~~~~dv~~t~~~l~~lG~~i~~~-~~~~~I~g~~~~~~~~~~~~~~~~~as~~~ 97 (417)
T PRK12830 20 GAKN-SAVALIPAAILADGPVTLDGVPDISDVHSLVDILEELGGKVKRD-GDTLEIDPTGIQSMPLPNGKVKSLRASYYF 97 (417)
T ss_pred CcHH-HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHCCCEEEEc-CCEEEEECCCCCCCCCCHHHHhhchhHHHH
Confidence 3334 3556666666677765 678888899999887655422 222334443322211 11233434
Q ss_pred HHHHHhcCC-CeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 013432 169 VAAVRSCYG-ESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 169 ~A~vlAa~G-v~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~ 208 (443)
++.+++..| ++|...|...+..+.=..+.+.|++||+.+.
T Consensus 98 ~~~~~~~~~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~ 138 (417)
T PRK12830 98 MGALLGRFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVT 138 (417)
T ss_pred HHHHhcCCCceEEEecCCCccCCCcCHHHHHHHHHCCCEEE
Confidence 666665544 4899999888877766666788999999874
No 110
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=55.66 E-value=32 Score=35.87 Aligned_cols=98 Identities=8% Similarity=0.021 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCCC-------ccccchHHHHHHHhcC
Q 013432 111 SAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT-------RFFRSTLFVAAVRSCY 176 (443)
Q Consensus 111 gAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~~-------t~nisT~l~A~vlAa~ 176 (443)
.+++.|...+|.| .+++....+++++....+...+...+-+-|++..+.. +..-++.++..+++..
T Consensus 27 r~l~~a~la~g~s~i~~~~~~~dv~~t~~~l~~lG~~i~~~~~~~~~i~g~~~~~~~~~~~~~~~s~~s~~~l~~~~~~~ 106 (417)
T PRK09369 27 PILAASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVEFDGNGTVTIDASNINNTEAPYELVKKMRASILVLGPLLARF 106 (417)
T ss_pred HHHHHHHhCCCCEEEecCCCcHHHHHHHHHHHHCCCEEEEcCCCEEEEECCCCCCCcCCHHHHhhhhhHHHHHHHHhccC
Confidence 5555555566654 7789999999998875554322122333333321110 1111222445555554
Q ss_pred -CCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 013432 177 -GESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 177 -Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~ 208 (443)
+.++...|+..+.++--....|.|++||+++.
T Consensus 107 ~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~ 139 (417)
T PRK09369 107 GEAKVSLPGGCAIGARPVDLHLKGLEALGAEIE 139 (417)
T ss_pred CceEEEecCCCccCCCchHHHHHHHHHCCCEEE
Confidence 45899999888887766666899999999874
No 111
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=53.55 E-value=42 Score=28.19 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcCCCCCCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 013432 78 GGHLGYEEVQGVLRDVLPLQVDNKAPGV--SESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 138 (443)
Q Consensus 78 g~~Lt~eEa~~~~~~il~~~~~~~~g~~--~~~qigAfL~alr~KgeT~eElag~~~A~~~~~ 138 (443)
++.||.+|..++...++. .|.. ++..|+.+.+...-.-.|++||......+...+
T Consensus 33 ~r~Ltd~ev~~Va~~L~~------~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~Laa~G 89 (96)
T PF11829_consen 33 RRRLTDDEVAEVAAELAA------RGDPPVDRIDIGVAITRVTDELPTPEDIERVRARLAAAG 89 (96)
T ss_dssp TTTS-HHHHHHHHHHHHH------HTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHHHh------cCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhCC
Confidence 456999999999999983 4443 899999999998888889999999888776654
No 112
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=53.08 E-value=25 Score=36.50 Aligned_cols=99 Identities=11% Similarity=-0.032 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCC-----C--CCccccchHHHHHHHh
Q 013432 109 LLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-----G--NTRFFRSTLFVAAVRS 174 (443)
Q Consensus 109 qigAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggD-----G--~~t~nisT~l~A~vlA 174 (443)
+..+++++....|.+ .+++....+++++....+...+ ..+-+.|.+.. + ..+++-++.+++.+++
T Consensus 25 ~~r~l~~a~la~g~~~i~~~~~~~d~~~~~~~l~~lG~~i~~~~-~~~~i~g~~~~~~~~~~~~s~~~ra~~~~~~~~la 103 (416)
T TIGR01072 25 ALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDN-NTLEINTPNINSTEAPYELVRKMRASILVLGPLLA 103 (416)
T ss_pred HHHHHHHHHhCCCcEEEeCCCchHHHHHHHHHHHHCCCEEEEcC-CEEEEECCCCCCCCCCHHHHhhhhHHHHHHHHHhc
Confidence 445555555556643 5678888999998876554322 22334444321 0 0111212223333444
Q ss_pred c-CCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 013432 175 C-YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 175 a-~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~ 208 (443)
. .++++..+|+..+.++......|+|+++|+++.
T Consensus 104 ~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~ 138 (416)
T TIGR01072 104 RFGKAVVSLPGGCAIGARPVDLHLKGLKALGAEIV 138 (416)
T ss_pred cCCceEEEecCCCccCCCCHHHHHHHHHHCCCEEE
Confidence 3 257899999877777666556899999999874
No 113
>PRK10867 signal recognition particle protein; Provisional
Probab=49.19 E-value=3.4e+02 Score=28.91 Aligned_cols=169 Identities=15% Similarity=0.152 Sum_probs=91.9
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhc--CC------CHHH-HHHHHH-HHHh
Q 013432 67 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--RE------TDRE-LKAYCL-AFDD 136 (443)
Q Consensus 67 ~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~K--ge------T~eE-lag~~~-A~~~ 136 (443)
.+.+.++++.....||.+...+.++.|-..++ .-+++..-.-.|+-.++-+ |+ ++.+ +...+. .+.+
T Consensus 8 ~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll---~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~ 84 (433)
T PRK10867 8 RLSSAFKKLRGKGRLTEADIKEALREVRLALL---EADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVE 84 (433)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHH
Confidence 36778888877778887755555554321111 5778888888888877543 32 2322 322221 2322
Q ss_pred cCC----CCCCC-C-CCCceEEcCCCCCCCccccchHHHHHHHhcC-CCeEEeecCCCCCCCCCCcHHHH----HHhCCC
Q 013432 137 ELG----PPPVA-D-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCY-GESCLLHGAEWMPPKGGVTEEQM----LKFMGA 205 (443)
Q Consensus 137 ~~~----~~~~~-~-~~~vD~~GtggDG~~t~nisT~l~A~vlAa~-Gv~V~kHGnr~~ssk~Gs~~aDv----LeaLGi 205 (443)
... ++... . +.++-.||.+|.|+.|+ +.-.|.-++.. |.+|+.-..+-. +.+. .+- .+.+|+
T Consensus 85 ~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTt---aakLA~~l~~~~G~kV~lV~~D~~--R~aa--~eQL~~~a~~~gv 157 (433)
T PRK10867 85 ILGGENSELNLAAKPPTVIMMVGLQGAGKTTT---AGKLAKYLKKKKKKKVLLVAADVY--RPAA--IEQLKTLGEQIGV 157 (433)
T ss_pred HhCCCcceeeecCCCCEEEEEECCCCCcHHHH---HHHHHHHHHHhcCCcEEEEEcccc--chHH--HHHHHHHHhhcCC
Confidence 221 12111 1 23678899999999873 22233334455 898887765542 3332 333 356777
Q ss_pred CC-----CCCHHHHHH-HH---HhcCceeEEeccchhcH----HhHHHHhhhc
Q 013432 206 ST-----NLSVLQAKE-LL---EDEEIGFAYVSLREARP----SLYSLIGLRE 245 (443)
Q Consensus 206 ~i-----~~s~~~~~~-~L---e~~g~gf~fl~a~~~~P----a~~~l~~vR~ 245 (443)
++ ..+|.++.. .+ ...+.-+++++.+--++ .|..+..+.+
T Consensus 158 ~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~ 210 (433)
T PRK10867 158 PVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKA 210 (433)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHH
Confidence 63 245666553 33 33345567777665442 3444444544
No 114
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=47.99 E-value=60 Score=33.41 Aligned_cols=100 Identities=9% Similarity=0.005 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCC-----CCC-ccccchH-HHHHHHh
Q 013432 109 LLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-----GNT-RFFRSTL-FVAAVRS 174 (443)
Q Consensus 109 qigAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggD-----G~~-t~nisT~-l~A~vlA 174 (443)
...+++.|...+|+| .+++...+++|++....+.......+.+.|.+.. +.. ....++. +++.+++
T Consensus 14 ~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~~~~~~I~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~ 93 (400)
T cd01555 14 ALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEGENTLVIDASNINSTEAPYELVRKMRASILVLGPLLA 93 (400)
T ss_pred HHHHHHHHHhCCCcEEEECCCChHHHHHHHHHHHHcCCEEEECCCCEEEEECCCCCCCcCCHHHHhhhhhHHHHHHHHhc
Confidence 456677777778865 5679999999998876554322123334343221 000 0011222 3444444
Q ss_pred c-CCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 013432 175 C-YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 175 a-~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~ 208 (443)
. .++.+..+|+..+.++.-....++|+.+|+++.
T Consensus 94 ~~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~ 128 (400)
T cd01555 94 RFGEARVSLPGGCAIGARPVDLHLKGLEALGAKIE 128 (400)
T ss_pred CCCceEEEEcCCCccccCCHHHHHHHHHHCCCEEE
Confidence 3 457899889766554433334799999999875
No 115
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=46.66 E-value=55 Score=33.63 Aligned_cols=105 Identities=16% Similarity=0.034 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCC---Ccccc--c-hH--
Q 013432 103 PGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN---TRFFR--S-TL-- 167 (443)
Q Consensus 103 g~~~~~qigAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~---~t~ni--s-T~-- 167 (443)
|.-+..+.+-++.++ .+|+| .+++..+.+++++....+...+ ..+-+-|.+..+. ..++. | +.
T Consensus 9 ~sKs~~~r~l~~a~l-~~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~-~~~~i~g~~~~~~~~~~~i~~~~s~~s~~ 86 (409)
T cd01556 9 GSKSISHRALLLAAL-AEGESRIENLLDSDDTLATLEALRALGAKIEEEG-GTVEIVGGGGLGLPPEAVLDCGNSGTTMR 86 (409)
T ss_pred CchHHHHHHHHHHHh-cCCCEEECCCCCCHHHHHHHHHHHHcCCeEEecC-CEEEEEcCCCCCCCCCceEEcCCchHHHH
Confidence 334455666566665 67765 5788899999998876665432 2333444433222 22222 1 22
Q ss_pred HHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCC
Q 013432 168 FVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 209 (443)
Q Consensus 168 l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~ 209 (443)
++..+++.++.++..+|...+.++-=....++|++||+++..
T Consensus 87 ~l~~l~~~~~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~~ 128 (409)
T cd01556 87 LLTGLLALQGGDSVLTGDESLRKRPMGRLVDALRQLGAEIEG 128 (409)
T ss_pred HHHHHHHcCCCeEEEECCcccccCChHHHHHHHHHCCCEEEe
Confidence 233344444668888887444333223348999999998753
No 116
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=43.79 E-value=63 Score=33.40 Aligned_cols=101 Identities=15% Similarity=0.018 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCC-CCCcccc---chH--HHHHH
Q 013432 106 SESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD-GNTRFFR---STL--FVAAV 172 (443)
Q Consensus 106 ~~~qigAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggD-G~~t~ni---sT~--l~A~v 172 (443)
+-.+.+-++.++ .+|+| .+++...+++++.....+...+ ..+-+-|+|+. .....++ -|. |...+
T Consensus 10 s~~~r~l~~a~l-a~g~~~i~~~~~~~dv~~~~~~l~~lG~~i~~~~-~~~~i~g~~~~~~~~~i~~g~sgt~~r~l~~l 87 (409)
T TIGR01356 10 SITHRALILAAL-AEGETRVRNLLRSEDTLATLDALRALGAKIEDGG-EVAVIEGVGGKEPQAELDLGNSGTTARLLTGV 87 (409)
T ss_pred HHHHHHHHHHHh-CCCCEEECCCCcCHHHHHHHHHHHHcCCEEEecC-CEEEEEccCCCCCCCEEEecCchHHHHHHHHH
Confidence 344444444444 56665 6899999999998776554322 23333344431 1112221 122 45556
Q ss_pred HhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 013432 173 RSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 173 lAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~ 208 (443)
++.++.++..+|...+.++-=..+.+.|+.||+.+.
T Consensus 88 ~a~~~~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~ 123 (409)
T TIGR01356 88 LALADGEVVLTGDESLRKRPMGRLVDALRQLGAEIS 123 (409)
T ss_pred HHcCCCeEEEECCcccccCCcHHHHHHHHHCCCEEE
Confidence 667788999999877654433334789999999875
No 117
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=42.81 E-value=72 Score=33.95 Aligned_cols=101 Identities=15% Similarity=0.011 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCCCc-------cccchH--HH
Q 013432 106 SESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTR-------FFRSTL--FV 169 (443)
Q Consensus 106 ~~~qigAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~~t-------~nisT~--l~ 169 (443)
+-.+-+-+|.+| .+|+| .|.....++|++.....+...+ ..+.+.|+|+ +... -|--|+ |.
T Consensus 24 SishRalilaaL-A~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~-~~~~v~g~g~-~~~~~~~~l~~GnSGTt~R~l 100 (428)
T COG0128 24 SISHRALLLAAL-AEGESTITNLLDSEDTLATLEALRALGARIEKEG-DTLVVRGTGG-ELKEPPAVLDCGNSGTTLRLL 100 (428)
T ss_pred cHHHHHHHHHHH-cCCceEEeeeeccHhHHHHHHHHHHhCCeEEccC-CEEEEeCCCC-CcCCCCceeeeccchhHHHHH
Confidence 344555555555 67764 4778889999998886665433 4567778876 4332 233343 45
Q ss_pred HHHHhc-CCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCC
Q 013432 170 AAVRSC-YGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 209 (443)
Q Consensus 170 A~vlAa-~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~ 209 (443)
..++|. .+-.++.+|..++..+==..+.|.|.++|+.++.
T Consensus 101 ~glla~~~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~ 141 (428)
T COG0128 101 TGLLALGSPGETVLTGDESLRKRPMGPLVDALRQLGAKIDG 141 (428)
T ss_pred HHHHhcCCCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEe
Confidence 555554 4478999999888765444457888888988753
No 118
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=42.35 E-value=45 Score=30.93 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=60.3
Q ss_pred ceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecC-----CCCCCCCCCcHHHHHHhCC-CCCCCCHHHHHHHHHhc-
Q 013432 149 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGA-----EWMPPKGGVTEEQMLKFMG-ASTNLSVLQAKELLEDE- 221 (443)
Q Consensus 149 vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGn-----r~~ssk~Gs~~aDvLeaLG-i~i~~s~~~~~~~Le~~- 221 (443)
|-+.|++|.|+.| ++..+.+..|++=.-.|+ -...+.-|--...+++.=+ ++=.....-+...+++.
T Consensus 3 iiilG~pGaGK~T------~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d 76 (178)
T COG0563 3 ILILGPPGAGKST------LAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEAD 76 (178)
T ss_pred EEEECCCCCCHHH------HHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhc
Confidence 4578999999976 588888888888776553 2223334433334444434 22223345566666663
Q ss_pred -CceeEEeccchhcHHhHHHHhhhcccC
Q 013432 222 -EIGFAYVSLREARPSLYSLIGLREHIK 248 (443)
Q Consensus 222 -g~gf~fl~a~~~~Pa~~~l~~vR~~Lg 248 (443)
..||.|...|...+....+-..-+++|
T Consensus 77 ~~~~~I~dg~PR~~~qa~~l~r~l~~~g 104 (178)
T COG0563 77 CKAGFILDGFPRTLCQARALKRLLKELG 104 (178)
T ss_pred ccCeEEEeCCCCcHHHHHHHHHHHHHcC
Confidence 128999988998888888776666666
No 119
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=42.24 E-value=57 Score=33.59 Aligned_cols=156 Identities=12% Similarity=0.083 Sum_probs=91.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHh---cCCCC
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR---ETDRELKAYCLAFDD---ELGPP 141 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~Kg---eT~eElag~~~A~~~---~~~~~ 141 (443)
....++.+.+|+ +|..+.-.++-.+- -...++.++++|.-+||-+. .-+.+.. ++.+=- -...+
T Consensus 22 A~~l~~~il~g~-~~~~qi~A~L~Alr-------~Kget~eEi~G~~~am~~~~~~~~~p~~~~--vDi~GTGGDg~~T~ 91 (338)
T COG0547 22 ARELFKAILSGE-ASPAQIGAFLTALR-------IKGETPEEIAGFAEAMREHAPKLPVPAADP--VDIVGTGGDGANTI 91 (338)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHHhcccCCCCCCCC--CCeecCCCCCCCcc
Confidence 455666677764 56666666666664 35568999999999999632 2222210 110000 00001
Q ss_pred CCC---------CCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHH
Q 013432 142 PVA---------DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVL 212 (443)
Q Consensus 142 ~~~---------~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~ 212 (443)
.+. -.-.|-.+|--....++ -+|=++.++||++..+-.+. ...|+..|+-+-.
T Consensus 92 NiSt~aA~v~A~~Gv~VaKHGnrs~sSks------GsaDvleaLGv~l~~~~e~~---------~~~l~~~g~~Flf--- 153 (338)
T COG0547 92 NISTAAAIVAAAAGVPVAKHGNRSVSSKS------GSADVLEALGVNLELSPEQA---------ARALEETGIGFLF--- 153 (338)
T ss_pred cchHHHHHHHHhCCCcEEeECCCCCCCCC------cHHHHHHHcCCCCCCCHHHH---------HHHHHhcCeEEEE---
Confidence 100 01123445544433332 36889999999998643332 7888988886421
Q ss_pred HHHHHHHhcCceeEEeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhh
Q 013432 213 QAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQF 262 (443)
Q Consensus 213 ~~~~~Le~~g~gf~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~ 262 (443)
.-.|-++=.+--.+++-+.+|..+++-.||.||++++++
T Consensus 154 -----------Ap~~hp~~k~v~~vR~~LG~RTifN~LGPL~NPa~~~~q 192 (338)
T COG0547 154 -----------APAYHPAMKHVAPVRKELGVRTIFNLLGPLLNPARAKLQ 192 (338)
T ss_pred -----------ccccCHHHHHHHHHHHHcCCCchHHhhccccCCCCCCce
Confidence 112343333444567789999999999999999876543
No 120
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=41.45 E-value=75 Score=30.00 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 138 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~ 138 (443)
....|..+...+.+..++-.+.++.++ +..++=..++-+.++-+++..|+++-..|++++++..
T Consensus 34 ~~~vl~~l~~~~~~~~~~~~~~l~~iv-------~~~~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l 97 (198)
T TIGR03481 34 HGALLDVMKEAKKLGYQGRYTKLAPAV-------REAFDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELS 97 (198)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHH-------HHhCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 444555565555566677788888888 6788999999999999999999999999999998753
No 121
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=40.67 E-value=43 Score=35.15 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCCCCceEEcCC-CCCCCccccchHHHHH-HHhcCCCeEEeecCCC
Q 013432 110 LSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEP-YDGNTRFFRSTLFVAA-VRSCYGESCLLHGAEW 187 (443)
Q Consensus 110 igAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~~~vD~~Gtg-gDG~~t~nisT~l~A~-vlAa~Gv~V~kHGnr~ 187 (443)
|++.|+-.-+|++++|.....+...-+.....+.. .--+|.+|-. .+|.. +..+-++ -+++-|++..-|.+..
T Consensus 176 I~sklI~~~~R~~~~e~~~e~v~~~~~~~~~~~~~-VvGidL~G~e~~~~p~----~~f~~vl~~~~~~gi~~t~HaGE~ 250 (399)
T KOG1097|consen 176 IKSKLIMCCIRHMPPEVAEETVSEAKELNKLFPNF-VVGIDLVGQEDLGGPL----SLFLEVLAKAPAKGIHLTFHAGET 250 (399)
T ss_pred CcceEEEeeccCCChHHHHHHHHHHHHHHHhCCCe-EEEEecCCCCCCCCCh----hhhHHHHHhhhhcCCcEEEEcccc
Confidence 77777777778887777666555554421111110 1124554444 32222 3322333 3334899999999987
Q ss_pred CCCCCCC-cHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhcc
Q 013432 188 MPPKGGV-TEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQ 266 (443)
Q Consensus 188 ~ssk~Gs-~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~ 266 (443)
- .|+ ...++|.-||. ++.|.|+.. .-||.+-++...|...=---|+.|
T Consensus 251 ~---~~~~~v~~~LD~l~~-------------~RIGHG~~l----~~dp~L~~~~k~~nI~lEiCP~SN----------- 299 (399)
T KOG1097|consen 251 N---GGASVVKNALDLLGT-------------ERIGHGYFL----TKDPELINLLKSRNIALEICPISN----------- 299 (399)
T ss_pred C---CChHHHHHHHHhhCC-------------ccccCceec----cCCHHHHHHHHhcCceEEEccchh-----------
Confidence 4 232 11333333332 355677743 378876665544442222226655
Q ss_pred CCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCC
Q 013432 267 GREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEE 303 (443)
Q Consensus 267 ~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~e 303 (443)
+|+|.- .++.+.-..-+...|+ -+|++..|
T Consensus 300 ----~vl~~v-~d~rnhp~~~~~~~~v--P~vI~sDD 329 (399)
T KOG1097|consen 300 ----QVLGLV-SDLRNHPVARLLAAGV--PVVINSDD 329 (399)
T ss_pred ----hheecc-ccccccHHHHHHhCCC--CEEEeCCC
Confidence 455555 4455555555556665 56777644
No 122
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=40.07 E-value=98 Score=32.98 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=90.9
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhc--CC------CHH-HHHH-HHHHHHh
Q 013432 67 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--RE------TDR-ELKA-YCLAFDD 136 (443)
Q Consensus 67 ~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~K--ge------T~e-Elag-~~~A~~~ 136 (443)
++.+.++++.....||.+...++++.|-..++ +-+++..-.-.|+--++-+ |+ ++. .+.. +.+.+.+
T Consensus 8 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl---eaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~ 84 (429)
T TIGR01425 8 SITSALRSMSNATVIDEEVLNAMLKEICTALL---ESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCN 84 (429)
T ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHH
Confidence 47888999998889999988777776542222 4677887777888777543 22 221 1222 2222222
Q ss_pred cCC----CCCCC-C-CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHH----hCCCC
Q 013432 137 ELG----PPPVA-D-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLK----FMGAS 206 (443)
Q Consensus 137 ~~~----~~~~~-~-~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLe----aLGi~ 206 (443)
... ++... . +.+|-.||..|.|+.|+- .-.|..+...|.+|+.-..+.. +.|. .+-|. .+|++
T Consensus 85 ~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTta---aKLA~~l~~~G~kV~lV~~D~~--R~aA--~eQLk~~a~~~~vp 157 (429)
T TIGR01425 85 LVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTC---TKLAYYYQRKGFKPCLVCADTF--RAGA--FDQLKQNATKARIP 157 (429)
T ss_pred HhCCCCccccccCCCCeEEEEECCCCCCHHHHH---HHHHHHHHHCCCCEEEEcCccc--chhH--HHHHHHHhhccCCe
Confidence 111 12111 1 236788999999998622 1123345567989888766532 2343 45543 35665
Q ss_pred CC-----CCHHHH-HHH---HHhcCceeEEeccchhcHH
Q 013432 207 TN-----LSVLQA-KEL---LEDEEIGFAYVSLREARPS 236 (443)
Q Consensus 207 i~-----~s~~~~-~~~---Le~~g~gf~fl~a~~~~Pa 236 (443)
+. .+|.++ .+. +.+.+.-+++++.+--++.
T Consensus 158 ~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~ 196 (429)
T TIGR01425 158 FYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQ 196 (429)
T ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcc
Confidence 33 244332 223 3333577888888766654
No 123
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=39.69 E-value=99 Score=23.60 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=32.5
Q ss_pred HHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 013432 87 QGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 138 (443)
Q Consensus 87 ~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~ 138 (443)
+++++.+.+ ....+..|+..++-.+--..-++.++++|+-+++-+.
T Consensus 3 ~~~l~~l~~------g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al~~kg 48 (66)
T PF02885_consen 3 KEILKKLRD------GEDLSREEAKAAFDAILDGEVSDAQIAAFLMALRMKG 48 (66)
T ss_dssp HHHHHHHHT------T----HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHc------CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 567777772 4568999999999998655569999999999998654
No 124
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=39.06 E-value=8.7 Score=31.83 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=43.9
Q ss_pred cCCCeEEeecCCCCCCCCCCcHHHHHHhCCCC----CCCCHHHHHHHHHhcCceeEEec
Q 013432 175 CYGESCLLHGAEWMPPKGGVTEEQMLKFMGAS----TNLSVLQAKELLEDEEIGFAYVS 229 (443)
Q Consensus 175 a~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~----i~~s~~~~~~~Le~~g~gf~fl~ 229 (443)
+.|..+.+|-+++..+....+.+..|..+|+| ++-+.+.+.+++.+ .||.+++
T Consensus 23 rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~--lg~~~~p 79 (89)
T PF08444_consen 23 RMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKS--LGFIFMP 79 (89)
T ss_pred cccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHH--CCCeecC
Confidence 57889999999998888888889999999998 55666788888888 7776653
No 125
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=39.00 E-value=4.3e+02 Score=26.80 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcC--C---CHHHHHHHHH-HHHhcCC--
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR--E---TDRELKAYCL-AFDDELG-- 139 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~Kg--e---T~eElag~~~-A~~~~~~-- 139 (443)
+.+.++++..++.++.+-..++...++ .-.+++.-.-.++-.++-+. + +.+++..++. .+.+...
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~l~~~L~-------~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 103 (318)
T PRK10416 31 FGEGINGLFAKKKIDEDLLEELEELLI-------EADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEELAEILEPV 103 (318)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCcC
Confidence 556667777777899888888888888 77888888888888776542 1 4555544433 4444322
Q ss_pred --CCCC--CCCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCC
Q 013432 140 --PPPV--ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEW 187 (443)
Q Consensus 140 --~~~~--~~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~ 187 (443)
++.. ..+..+-.+|++|.|+.|.-. -.|..++..|.+|..-+.+-
T Consensus 104 ~~~~~~~~~~~~vi~lvGpnGsGKTTt~~---kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 104 EKPLNIEEKKPFVILVVGVNGVGKTTTIG---KLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CccccccCCCCeEEEEECCCCCcHHHHHH---HHHHHHHhcCCeEEEEecCc
Confidence 1211 113367789999999876221 12334456688888877654
No 126
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=38.87 E-value=22 Score=41.11 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=31.2
Q ss_pred cccccc--cCCCceEEee--cCCCceeeeccC----CCCCCCCCCccc---cc--HHHHHHHHhcC
Q 013432 26 WPLLMR--ALPPDVIFIA--DPEGSIMGGGGS----IGPHYSGNDPRE---MR--LVGALREVLAG 78 (443)
Q Consensus 26 hsl~~~--~lp~~~~~~a--~~~~~im~~~h~----~g~qfhpes~~G---~~--l~~~L~kl~~g 78 (443)
|-..++ +||..-+.+- ..||.--+|-|. +-+|||||+..| .. +..|+..+...
T Consensus 290 HGYAVD~~tLp~gWk~lFvN~NDgSNEGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~ 355 (1435)
T KOG0370|consen 290 HGYAVDPATLPAGWKPLFVNANDGSNEGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKKS 355 (1435)
T ss_pred CceeeccccccCCCchheeecccCCCceEecCCCCceeeecCCcCCCCCcchHHHHHHHHHHHHHH
Confidence 555554 5887655543 345555556664 999999998333 22 44555444433
No 127
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=38.21 E-value=98 Score=34.93 Aligned_cols=102 Identities=16% Similarity=0.079 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCCC----cc---ccchH--HHH
Q 013432 107 ESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT----RF---FRSTL--FVA 170 (443)
Q Consensus 107 ~~qigAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~~----t~---nisT~--l~A 170 (443)
..|..+++.|.-.+|+| .+++...+++|+.....+...+...+-+-|.+..+.. .+ +-.|. |++
T Consensus 323 S~~~r~L~~a~la~g~s~i~~~~~~~dv~~ti~~L~~lG~~v~~~~~~~~~i~g~~~~~~~~~~~~i~~~~s~ts~~ll~ 402 (735)
T PRK14806 323 SISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVIEGPHNGRVTIHGVGLHGLKAPPGPLYMGNSGTSMRLLS 402 (735)
T ss_pred hHHHHHHHHHHhCCCcEEEcCCCccHHHHHHHHHHHHcCCEEEecCCCEEEEEcCCCCCCCCCCceeeccCchHHHHHHH
Confidence 34556666666677654 4677888899988776554211122223333321110 11 11222 455
Q ss_pred HHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 013432 171 AVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 171 ~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~ 208 (443)
.+++....+|...|...+..+-=..+.++|+.+|+++.
T Consensus 403 a~la~~~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~ 440 (735)
T PRK14806 403 GLLAAQSFDSVLTGDASLSKRPMERVAKPLREMGAVIE 440 (735)
T ss_pred HHHhcCCCeEEEECChhhhhCChHHHHHHHHHCCCEEE
Confidence 56666666889999988776654555788899999875
No 128
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=37.21 E-value=1.3e+02 Score=31.88 Aligned_cols=114 Identities=16% Similarity=0.089 Sum_probs=73.1
Q ss_pred HHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC-CCCC-CCceEEcCCCCCCCcccc
Q 013432 87 QGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPP-VADV-KSLTHYGEPYDGNTRFFR 164 (443)
Q Consensus 87 ~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~-~~~~-~~vD~~GtggDG~~t~ni 164 (443)
.++++...+ ..+++..|+..|+..+--..-++.++++|+-|++-+....+ .... ..+-..|. +++.
T Consensus 2 ~~~i~kk~~------g~~Lt~eE~~~~~~~i~~G~~~d~QiaAfLmAl~~kGeT~eEi~g~t~Am~~~~~------~l~~ 69 (405)
T TIGR02644 2 VDIIRKKRD------GKKLSDEEINFFINGYTNGEIPDYQMSALLMAIYFNGMTDEETAYLTKAMIDSGE------VLDL 69 (405)
T ss_pred HHHHHHHHc------CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------cCCC
Confidence 345666662 45689999999888874444578899999999987654322 1000 00000111 1221
Q ss_pred chHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC-------CCHHHHHHHHHh
Q 013432 165 STLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN-------LSVLQAKELLED 220 (443)
Q Consensus 165 sT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~-------~s~~~~~~~Le~ 220 (443)
+. -.|..|-|||.-++..+..+.++=++.++|+++. .+..-..+.||.
T Consensus 70 ~~--------~~~~~vD~~gTGGdG~~iSt~~a~ivAa~Gv~VaKhgnR~lss~~GTaD~LE~ 124 (405)
T TIGR02644 70 SS--------LPGPKVDKHSTGGVGDKVSLVLGPIVAACGVKVAKMSGRGLGHTGGTIDKLES 124 (405)
T ss_pred cc--------cCCCeeEEeCCCCCCCCchHHHHHHHHhCCCCEEeeCCCCCCCcchHHHHHHh
Confidence 11 1356899999988888777677888899999854 233568888998
No 129
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=35.96 E-value=3.1e+02 Score=24.20 Aligned_cols=100 Identities=11% Similarity=-0.049 Sum_probs=60.3
Q ss_pred CCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEecc--ch
Q 013432 155 PYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSL--RE 232 (443)
Q Consensus 155 ggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a--~~ 232 (443)
++|+...-.. +++.++..+|+.|.--| ++.+++++.+...+.+.-++.+++ ..
T Consensus 8 ~gD~HdiGkn---iv~~~L~~~GfeVidLG----------------------~~v~~e~~v~aa~~~~adiVglS~L~t~ 62 (128)
T cd02072 8 GSDCHAVGNK---ILDHAFTEAGFNVVNLG----------------------VLSPQEEFIDAAIETDADAILVSSLYGH 62 (128)
T ss_pred CCchhHHHHH---HHHHHHHHCCCEEEECC----------------------CCCCHHHHHHHHHHcCCCEEEEeccccC
Confidence 5566654433 36777777888877433 245677777777666665655543 45
Q ss_pred hcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeec--CCCchHHHHHHHHHcCCce
Q 013432 233 ARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFY--HEGYEEPLLMLMKRRGVHS 295 (443)
Q Consensus 233 ~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~--h~~~~~~~a~~l~~lG~~~ 295 (443)
..+.|+.+...-++-|+|... ..+=|.. .++-.+...+.|+.+|+++
T Consensus 63 ~~~~~~~~~~~l~~~gl~~v~----------------vivGG~~~i~~~d~~~~~~~L~~~Gv~~ 111 (128)
T cd02072 63 GEIDCKGLREKCDEAGLKDIL----------------LYVGGNLVVGKQDFEDVEKRFKEMGFDR 111 (128)
T ss_pred CHHHHHHHHHHHHHCCCCCCe----------------EEEECCCCCChhhhHHHHHHHHHcCCCE
Confidence 667788888887777876411 2344442 2232333456688888843
No 130
>PHA00438 hypothetical protein
Probab=35.57 E-value=60 Score=26.18 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDD 136 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~ 136 (443)
..+||.-..+ -++-+..-.++.+- ...+|+.-|+.||.++.+-..|.||+.+.-+.+++
T Consensus 22 a~eyLqvrfN---asYl~~sG~i~~lR-------~~G~SE~~IaGfl~Gl~yAs~~ldeme~r~~ql~e 80 (81)
T PHA00438 22 AAEYLQVRFN---ASYLEQSGEIRLLR-------QAGYSEAFIAGFLAGLQYASRTLDEMEARREQLRE 80 (81)
T ss_pred HHHHHHHHHh---HHHHHHhhhHHHHH-------HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566655443 45556666666665 56789999999999999999999999887665543
No 131
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=35.16 E-value=21 Score=37.90 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=20.8
Q ss_pred CceEEee-cCCCceeeec----cC--CCCCCCCC
Q 013432 35 PDVIFIA-DPEGSIMGGG----GS--IGPHYSGN 61 (443)
Q Consensus 35 ~~~~~~a-~~~~~im~~~----h~--~g~qfhpe 61 (443)
..|.+.. +++|+=|-+- |. -|+|||||
T Consensus 495 ~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE 528 (585)
T KOG2387|consen 495 AGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPE 528 (585)
T ss_pred cCcEEEeecCCCcEEEEEEcCCCCceeeeccCHH
Confidence 4688898 8888666553 33 89999999
No 132
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=34.35 E-value=89 Score=25.41 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLS-AFLIGQRMNRETDRELKAYCLAFDDELGP 140 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qig-AfL~alr~KgeT~eElag~~~A~~~~~~~ 140 (443)
+..+|+.+.....+|.+|...+..-+. ++.|.| .+|-.-+.||+ ++.+.|+++...
T Consensus 16 V~~~Ld~ll~~G~is~~Ecd~Ir~p~~-----------T~sqqARrLLD~V~~KG~------~A~~~ll~~vq~ 72 (81)
T cd08788 16 VDGALELLLTRGFFSSYDCDEIRLPIF-----------TPSQQARRLLDLVKAKGE------GAAKFLLEYVQQ 72 (81)
T ss_pred HHHHHHHHHHcCCccHhhcchhhcCCC-----------ChHHHHHHHHHHHHHHhH------HHHHHHHHHHHh
Confidence 778999999999999999887765554 565555 56666799998 555566665443
No 133
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=33.27 E-value=4.1e+02 Score=28.24 Aligned_cols=159 Identities=13% Similarity=0.162 Sum_probs=87.1
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHh--cC------CCH-HHHHHHH-HHHHh
Q 013432 67 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRM--NR------ETD-RELKAYC-LAFDD 136 (443)
Q Consensus 67 ~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~--Kg------eT~-eElag~~-~A~~~ 136 (443)
.+.+.++++.....||.++..+.++.|-..++ +-+++..-.-.|+-.++- +| .++ +.+...+ +.+.+
T Consensus 7 ~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll---~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ 83 (428)
T TIGR00959 7 RLQRIFKKLSGRGTITEKNIKEALREIRLALL---EADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVA 83 (428)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHH
Confidence 47888999888888998777766665432222 567888888888877753 33 233 3232222 11122
Q ss_pred cCC----CCCCC-C-CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHH----HhCCCC
Q 013432 137 ELG----PPPVA-D-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGAS 206 (443)
Q Consensus 137 ~~~----~~~~~-~-~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvL----eaLGi~ 206 (443)
... ++... . +..+-.||.+|.|+.|+-.- ++..+....|.+|+.-..+-. +.+. .+-| +.+|++
T Consensus 84 ~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaak--LA~~l~~~~g~kV~lV~~D~~--R~~a--~~QL~~~a~~~gvp 157 (428)
T TIGR00959 84 ILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGK--LAYYLKKKQGKKVLLVACDLY--RPAA--IEQLKVLGQQVGVP 157 (428)
T ss_pred HhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHH--HHHHHHHhCCCeEEEEecccc--chHH--HHHHHHHHHhcCCc
Confidence 111 12111 1 22678899999999863221 233333356888887765542 2232 3433 345665
Q ss_pred CC-----CCHHHHH-HHH---HhcCceeEEeccchhc
Q 013432 207 TN-----LSVLQAK-ELL---EDEEIGFAYVSLREAR 234 (443)
Q Consensus 207 i~-----~s~~~~~-~~L---e~~g~gf~fl~a~~~~ 234 (443)
+- .+|.++. +.+ ...+.-+++++.+--+
T Consensus 158 ~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 158 VFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred eEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 22 3464442 333 3334556778776544
No 134
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=33.18 E-value=10 Score=37.09 Aligned_cols=9 Identities=11% Similarity=0.265 Sum_probs=8.5
Q ss_pred CCCCCCCCC
Q 013432 54 IGPHYSGND 62 (443)
Q Consensus 54 ~g~qfhpes 62 (443)
+|+|+|||-
T Consensus 262 tgfQWHPEK 270 (340)
T KOG1559|consen 262 TGFQWHPEK 270 (340)
T ss_pred eeeeecCcc
Confidence 999999995
No 135
>PRK14974 cell division protein FtsY; Provisional
Probab=32.45 E-value=5.7e+02 Score=26.25 Aligned_cols=129 Identities=14% Similarity=0.064 Sum_probs=65.5
Q ss_pred CCCCCHHHHHHHHHHHHhc--------CCCHHH-H-HHHHHHHHhcCCCCC---C------C-CCCCceEEcCCCCCCCc
Q 013432 102 APGVSESLLSAFLIGQRMN--------RETDRE-L-KAYCLAFDDELGPPP---V------A-DVKSLTHYGEPYDGNTR 161 (443)
Q Consensus 102 ~g~~~~~qigAfL~alr~K--------geT~eE-l-ag~~~A~~~~~~~~~---~------~-~~~~vD~~GtggDG~~t 161 (443)
+..+++.-.-.++..++-+ +.+.++ + ..+.+.+.+...+.+ . . .+..+-.+|.+|.|+.|
T Consensus 76 ~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~vi~~~G~~GvGKTT 155 (336)
T PRK14974 76 ESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEIKSKGKPVVIVFVGVNGTGKTT 155 (336)
T ss_pred HCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCcchhhhhhhhccCCCeEEEEEcCCCCCHHH
Confidence 5667777666676666544 233333 2 223334433221111 1 1 12367789999999886
Q ss_pred cccchHHHHHHHhcCCCeEEeecCCCCCCCCCCc--HHHHHHhCCCCCC-----CCHHH-HHH---HHHhcCceeEEecc
Q 013432 162 FFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVT--EEQMLKFMGASTN-----LSVLQ-AKE---LLEDEEIGFAYVSL 230 (443)
Q Consensus 162 ~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~--~aDvLeaLGi~i~-----~s~~~-~~~---~Le~~g~gf~fl~a 230 (443)
. ..-.|..+...|.+|+....+. -+.|.. +....+.+|+++- .+|.. +.+ ..+..+.-++++..
T Consensus 156 t---iakLA~~l~~~g~~V~li~~Dt--~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDT 230 (336)
T PRK14974 156 T---IAKLAYYLKKNGFSVVIAAGDT--FRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDT 230 (336)
T ss_pred H---HHHHHHHHHHcCCeEEEecCCc--CcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 2 2223334566789998866542 233431 1233455788753 23322 222 22334555677776
Q ss_pred chhcH
Q 013432 231 REARP 235 (443)
Q Consensus 231 ~~~~P 235 (443)
+-..+
T Consensus 231 aGr~~ 235 (336)
T PRK14974 231 AGRMH 235 (336)
T ss_pred CCccC
Confidence 55443
No 136
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=31.79 E-value=1.4e+02 Score=24.54 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDE 137 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~ 137 (443)
+..+|..+....-+|.||+..+- +..-+..++=++|...+.|||+..++ |..++++.
T Consensus 17 v~plLD~Ll~n~~it~E~y~~V~-----------a~~T~qdkmRkLld~v~akG~~~k~~--F~~iL~e~ 73 (85)
T cd08324 17 TQCLVDNLLKNDYFSTEDAEIVC-----------ACPTQPDKVRKILDLVQSKGEEVSEY--FLYLLQQL 73 (85)
T ss_pred hHHHHHHHhccCCccHHHHHHHH-----------hCCCCHHHHHHHHHHHHhcCchHHHH--HHHHHHHH
Confidence 56788889999999999987543 56668999999999999999987764 66666553
No 137
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=30.28 E-value=1.9e+02 Score=30.06 Aligned_cols=101 Identities=17% Similarity=0.017 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCC----Cccc---cchH--
Q 013432 104 GVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN----TRFF---RSTL-- 167 (443)
Q Consensus 104 ~~~~~qigAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~----~t~n---isT~-- 167 (443)
.-+..+.+-++.++ ..|+| .+++....+++++....+.. ..+.+-|.+..|. ..++ ..|.
T Consensus 22 sks~~~r~l~~a~L-a~g~s~i~~~~~~~dv~~~~~~L~~lG~~i~~---~~~~i~~~~~~~~~~~~~~i~~~~sg~~~r 97 (435)
T PRK02427 22 SKSISHRALLLAAL-AEGETTITNLLRSEDTLATLNALRALGVEIED---DEVVVEGVGGGGLKEPEDVLDCGNSGTTMR 97 (435)
T ss_pred ChHHHHHHHHHHHh-cCCCEEEcCCCccHHHHHHHHHHHHcCCeEEc---ceEEEEccCCCCCCCCCCEEEccCchHHHH
Confidence 33445555444444 56664 56788889999887765543 2222333333221 1111 1122
Q ss_pred HHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 013432 168 FVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 168 l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~ 208 (443)
|...++|.++-++..+|...+.++-=..+.++|++||+++.
T Consensus 98 ~l~~laa~~~~~~~i~g~~~l~~r~~~~l~~~L~~lGa~i~ 138 (435)
T PRK02427 98 LLTGLLALQPGEVVLTGDESLRKRPMGRLLDPLRQMGAKIE 138 (435)
T ss_pred HHHHHHHhCCCeEEEECChhhccCChHHHHHHHHHCCCEEE
Confidence 22223344455888899765543322334789999999875
No 138
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=30.01 E-value=1.3e+02 Score=33.79 Aligned_cols=104 Identities=13% Similarity=-0.038 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCC--CCCCc----cccchHH-
Q 013432 103 PGVSESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPY--DGNTR----FFRSTLF- 168 (443)
Q Consensus 103 g~~~~~qigAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~Gtgg--DG~~t----~nisT~l- 168 (443)
|.-+-.+-+-++.+| ..|++ .+++...+++++..+..+... ...+.+.|.|+ ..... -|.+|.+
T Consensus 23 gsKs~s~R~l~lAaL-a~g~s~i~~~l~s~D~~~~l~aL~~LGa~i~~~-~~~i~I~g~g~~l~~~~~~i~~g~sGtt~r 100 (661)
T PRK11860 23 GSKSISNRVLLLAAL-SEGTTTVRDLLDSDDTRVMLDALRALGCGVEQL-GDTYRITGLGGQFPVKQADLFLGNAGTAMR 100 (661)
T ss_pred CCHHHHHHHHHHHHh-CCCCEEEccCCccHHHHHHHHHHHHcCCEEEec-CCEEEEECCCCCcCCCCceEEeCCchHHHH
Confidence 333445555555554 56654 478888889998877655322 12233444332 11111 1344442
Q ss_pred -HHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 013432 169 -VAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 169 -~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~ 208 (443)
...+++..+-.+..+|...+.++.=..+.++|+.+|+++.
T Consensus 101 ~Ll~~~al~~g~~~i~g~~~L~~RP~~~Ll~~L~~lGa~v~ 141 (661)
T PRK11860 101 PLTAALALLGGEYELSGVPRMHERPIGDLVDALRQLGCDID 141 (661)
T ss_pred HHHHHHHcCCCeEEEECCchhhcCChHHHHHHHHHCCCEEE
Confidence 2223444466889999888776654455788899998874
No 139
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=28.10 E-value=91 Score=32.60 Aligned_cols=61 Identities=16% Similarity=0.007 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCCceEE-cCCCCCCCccccchHHHHHHHhcCCCeEEeec
Q 013432 121 RETDRELKAYCLAFDDELGPPPVADVKSLTHY-GEPYDGNTRFFRSTLFVAAVRSCYGESCLLHG 184 (443)
Q Consensus 121 geT~eElag~~~A~~~~~~~~~~~~~~~vD~~-GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHG 184 (443)
+-|.+||..+.+.+.....+.+-....+|-++ .-||.||.| ++.-.|..+|..|.+|+.-=
T Consensus 81 ~ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTT---ta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 81 GYTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTS---SAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred eEcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHH---HHHHHHHHHHhCCCcEEEEe
Confidence 57999999988777642211111111223222 348999987 44446667788999999765
No 140
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.97 E-value=1.2e+02 Score=25.34 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=30.4
Q ss_pred HHHHHHHHhc--CCCCCHHHHHHHHHHhcCC-cCCCCCCCCCHHHHHHHHH
Q 013432 68 LVGALREVLA--GGHLGYEEVQGVLRDVLPL-QVDNKAPGVSESLLSAFLI 115 (443)
Q Consensus 68 l~~~L~kl~~--g~~Lt~eEa~~~~~~il~~-~~~~~~g~~~~~qigAfL~ 115 (443)
+.+|.+.-.+ |-+||.+++++++--|--. ---+..+++||+|.++|=.
T Consensus 48 Ls~Wy~eaae~~gv~lskd~aRE~VyGMpy~eWka~~Q~eAspeq~aafe~ 98 (104)
T COG3492 48 LSNWYREAAEAQGVDLSKDQAREIVYGMPYAEWKAQHQSEASPEQKAAFEA 98 (104)
T ss_pred HHHHHHHHHhccCCCccHHHHHHHHhCCCHHHHHHhcCCCCCHHHHHHHHh
Confidence 5556666554 4599999999987654200 0001157789999998853
No 141
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=27.79 E-value=1.9e+02 Score=30.31 Aligned_cols=101 Identities=18% Similarity=0.040 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCC-CCCCceEEcCCCCC--C------Cccc---cchH
Q 013432 107 ESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVA-DVKSLTHYGEPYDG--N------TRFF---RSTL 167 (443)
Q Consensus 107 ~~qigAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~-~~~~vD~~GtggDG--~------~t~n---isT~ 167 (443)
..+-.-++.+| .+|++ .+++..++++++.....+.+. +...+.+-|.|+.- . ..+| -.|.
T Consensus 24 ~~~r~l~~a~l-a~~~s~i~~~~~~~D~~~~~~~l~~lG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~g~sgt~ 102 (443)
T PLN02338 24 LSNRILLLAAL-SEGTTVVDNLLDSDDIRYMLGALKTLGLNVEEDSENNRAVVEGCGGKFPVSGDSKEDVELFLGNAGTA 102 (443)
T ss_pred HHHHHHHHHHh-CCCCEEEcCCCcCHHHHHHHHHHHHcCCeEEecCCCCeEEEEecCCCcCCcccccccceEEcCCcchH
Confidence 33444444444 56665 678999999999876555321 11123332322100 0 0011 0111
Q ss_pred ---HHHHHHhcC-CCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 013432 168 ---FVAAVRSCY-GESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 168 ---l~A~vlAa~-Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~ 208 (443)
+.+++++.. ..++...|...+.++.=..+.+.|++||+.+.
T Consensus 103 ~r~l~~~~~~~~~~~~~~~~g~~~l~~Rp~~~l~~~L~~lGa~i~ 147 (443)
T PLN02338 103 MRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQLGADVE 147 (443)
T ss_pred HHHHHHHHHhCCCCceEEEECChhhccCCchHHHHHHHHCCCEEE
Confidence 344444322 26899999988776655555789999999874
No 142
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=27.74 E-value=83 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHH
Q 013432 80 HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFL 114 (443)
Q Consensus 80 ~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL 114 (443)
++|.+|.++.+-.+- ...+++.|||..|
T Consensus 27 ~~~~~eVe~~I~kla-------kkG~tpSqIG~iL 54 (60)
T PF08069_consen 27 KYSPEEVEELIVKLA-------KKGLTPSQIGVIL 54 (60)
T ss_dssp -S-HHHHHHHHHHHC-------CTTHCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-------HcCCCHHHhhhhh
Confidence 478899999988887 7779999999876
No 143
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=27.18 E-value=2e+02 Score=32.32 Aligned_cols=96 Identities=16% Similarity=0.038 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCC--CCC----ccccchH--HHHHHHhcC
Q 013432 112 AFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYD--GNT----RFFRSTL--FVAAVRSCY 176 (443)
Q Consensus 112 AfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggD--G~~----t~nisT~--l~A~vlAa~ 176 (443)
+++.+.-.+|+| .+.+..++++++.....+...+ ..+-+-|+|+. +.. --|.+|. +...+++..
T Consensus 267 ~l~~AaLa~g~s~i~~~l~s~D~~~~~~aL~~lGa~i~~~~-~~~~I~g~~~~~~~~~~~i~~g~sGt~~r~L~~~~a~~ 345 (673)
T PRK11861 267 VLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLSRDG-GTCVVGGTRGAFTAKTADLFLGNAGTAVRPLTAALAVN 345 (673)
T ss_pred HHHHHHhcCCCEEEcCCCCCHHHHHHHHHHHHcCCeEEecC-CEEEEEcCCCCcCCCCceEecCCcchHHHHHHHHHHcC
Confidence 344444467765 6788889999998776654322 22334444321 111 1122444 233345556
Q ss_pred CCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 013432 177 GESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 177 Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~ 208 (443)
+-++..+|...+.++-=..+.|.|+.||+++.
T Consensus 346 ~g~~~i~G~~~L~~RPi~~ll~~L~~lGa~v~ 377 (673)
T PRK11861 346 GGEYRIHGVPRMHERPIGDLVDGLRQIGARID 377 (673)
T ss_pred CCeEEEECChhhccCChhHHHHHHHHCCCcEE
Confidence 66888999998886533334789999999875
No 144
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.08 E-value=2e+02 Score=27.54 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 013432 68 LVGALREVLAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 138 (443)
Q Consensus 68 l~~~L~kl~~g~---~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~ 138 (443)
..+.+..+-+++ +.+..-.+..++..+ ...++-.-+|.+.++=.+|.-|+|+...|.+++++..
T Consensus 37 a~~~ls~lk~~~~~~k~dp~~l~~~v~~~l-------~p~vd~~~~a~~vLGk~~k~aspeQ~~~F~~aF~~yl 103 (202)
T COG2854 37 ADKVLSILKNNQAKIKQDPQYLRQIVDQEL-------LPYVDFKYAAKLVLGKYYKTASPEQRQAFFKAFRTYL 103 (202)
T ss_pred HHHHHHHHhccchhhccCHHHHHHHHHHHh-------hhhhcHHHHHHHHhccccccCCHHHHHHHHHHHHHHH
Confidence 334444454443 789999999999999 7889899999999999999999999999999998753
No 145
>COG3926 zliS Lysozyme family protein [General function prediction only]
Probab=26.65 E-value=55 Score=31.77 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=25.5
Q ss_pred ccCCCCCCCCCCcccccHHHHHHHHhc--CCC--------CCHHHHHHHHHH
Q 013432 51 GGSIGPHYSGNDPREMRLVGALREVLA--GGH--------LGYEEVQGVLRD 92 (443)
Q Consensus 51 ~h~~g~qfhpes~~G~~l~~~L~kl~~--g~~--------Lt~eEa~~~~~~ 92 (443)
.|.-|+-+||.+|.|-.--.+-++..+ |.. ||++||.++++.
T Consensus 14 s~EGGY~d~PkDPGGaTn~GIT~~T~~A~G~~~S~~~vr~mT~aeA~~Iy~~ 65 (252)
T COG3926 14 SHEGGYADHPKDPGGATNWGITKRTLSAWGYNVSKADVRAMTRAEATAIYRE 65 (252)
T ss_pred hcccCccCCCCCCCCccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 455799999999888653333333322 554 556666665544
No 146
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=26.43 E-value=57 Score=25.53 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=21.9
Q ss_pred HHHHHHHHh--cCCCCCHHHHHHHHHHhcCC-cCCCCCCCCCHHHHHHH
Q 013432 68 LVGALREVL--AGGHLGYEEVQGVLRDVLPL-QVDNKAPGVSESLLSAF 113 (443)
Q Consensus 68 l~~~L~kl~--~g~~Lt~eEa~~~~~~il~~-~~~~~~g~~~~~qigAf 113 (443)
+.+|..... +|-+++++||++++--+=-. --.....++||.|+++|
T Consensus 17 LskWy~~aA~~~g~~~~~d~ARE~vYGMPy~eWK~~~Q~~At~eQ~aaf 65 (68)
T PF06844_consen 17 LSKWYREAAEERGIEMDKDEAREIVYGMPYDEWKAKHQTEATPEQLAAF 65 (68)
T ss_dssp HHHHHHHHHHHCT----HHHHHHHHHSS-HHHHCHCH-----HHHHHHH
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHhCCCHHHHHHHHCCCCCHHHHHHh
Confidence 555665554 46799999999998654100 00001357899999988
No 147
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.17 E-value=7.7e+02 Score=25.76 Aligned_cols=148 Identities=11% Similarity=0.058 Sum_probs=78.6
Q ss_pred HHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhcCCCC------CCCCCCCceEEcCCCCC
Q 013432 87 QGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR--ETDRELKAYCLAFDDELGPP------PVADVKSLTHYGEPYDG 158 (443)
Q Consensus 87 ~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~Kg--eT~eElag~~~A~~~~~~~~------~~~~~~~vD~~GtggDG 158 (443)
..+++.++ +-.+++.-.-.++-.+.... .+.++...+.........+. .+.....+-.+|+.|.|
T Consensus 77 ~~l~~~L~-------~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvG 149 (374)
T PRK14722 77 GALTKYLF-------AAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVG 149 (374)
T ss_pred HHHHHHHH-------HCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCC
Confidence 34455555 55666655555555554332 24555444444333322211 11223467789999999
Q ss_pred CCccccchHHHHHHHhcCC-CeEEeecCCCCCCCCCCcHHHHHH----hCCCCCC--CCHHHHHHHHHhc-CceeEEecc
Q 013432 159 NTRFFRSTLFVAAVRSCYG-ESCLLHGAEWMPPKGGVTEEQMLK----FMGASTN--LSVLQAKELLEDE-EIGFAYVSL 230 (443)
Q Consensus 159 ~~t~nisT~l~A~vlAa~G-v~V~kHGnr~~ssk~Gs~~aDvLe----aLGi~i~--~s~~~~~~~Le~~-g~gf~fl~a 230 (443)
|.|+-.- |++..+...| .+|..-..+.. +.|. .+-|. .+|+++. .++.+....+.+. +.-+++++.
T Consensus 150 KTTtiak--LA~~~~~~~G~~~V~lit~D~~--R~ga--~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDT 223 (374)
T PRK14722 150 KTTTTAK--LAARCVMRFGASKVALLTTDSY--RIGG--HEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDT 223 (374)
T ss_pred HHHHHHH--HHHHHHHhcCCCeEEEEecccc--cccH--HHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcC
Confidence 8752111 2222222345 46666554443 3344 45554 5788753 4444555554432 367788998
Q ss_pred chhcHHhHHHHhhhccc
Q 013432 231 REARPSLYSLIGLREHI 247 (443)
Q Consensus 231 ~~~~Pa~~~l~~vR~~L 247 (443)
+-+.|.-..+....+.|
T Consensus 224 aG~~~~d~~l~e~La~L 240 (374)
T PRK14722 224 IGMSQRDRTVSDQIAML 240 (374)
T ss_pred CCCCcccHHHHHHHHHH
Confidence 88887666665555554
No 148
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=26.14 E-value=87 Score=33.10 Aligned_cols=63 Identities=24% Similarity=0.166 Sum_probs=45.0
Q ss_pred cCCCc---eEEee-cCCCceeeecc-----C-------CCCCCCCCC--------cccccHHHHHHHHhcCC--------
Q 013432 32 ALPPD---VIFIA-DPEGSIMGGGG-----S-------IGPHYSGND--------PREMRLVGALREVLAGG-------- 79 (443)
Q Consensus 32 ~lp~~---~~~~a-~~~~~im~~~h-----~-------~g~qfhpes--------~~G~~l~~~L~kl~~g~-------- 79 (443)
..|+. +.+.- .++|.+..++. . -|+-|||++ -.+|.+++.|.-|=-|.
T Consensus 29 ~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~~~ev~~Ls~~MT~Knal~~Lp~GGGKGgi~~D 108 (411)
T COG0334 29 KEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVKALSFWMTLKNALAGLPYGGGKGGIIVD 108 (411)
T ss_pred cCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeeCC
Confidence 35653 33444 68898887764 2 899999997 23577999888865443
Q ss_pred --CCCHHHHHHHHHHhc
Q 013432 80 --HLGYEEVQGVLRDVL 94 (443)
Q Consensus 80 --~Lt~eEa~~~~~~il 94 (443)
.+|..|.+.+.+..+
T Consensus 109 Pk~~S~~E~erl~raf~ 125 (411)
T COG0334 109 PKGLSDGELERLSRAFG 125 (411)
T ss_pred cccCCHHHHHHHHHHHH
Confidence 588999888888776
No 149
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=26.08 E-value=7.2e+02 Score=25.42 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=89.5
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCC---CCCCCCCCCce--EEcCCC-CCCCccccchHHHHHHHhcCCCeEEeecCCCCCC
Q 013432 117 QRMNRETDRELKAYCLAFDDELG---PPPVADVKSLT--HYGEPY-DGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPP 190 (443)
Q Consensus 117 lr~KgeT~eElag~~~A~~~~~~---~~~~~~~~~vD--~~Gtgg-DG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ss 190 (443)
+.++..|.|||..+.+-..+... +....+ .+. ++++-+ -...|.-.|+=.|+. ..|..|+.-.....|+
T Consensus 11 is~~dls~~ei~~ll~~A~~~~~~~~~~~~~~--~l~gk~v~~lFFEpSTRTr~SFE~A~k---rLG~~Vv~~~~~~sSs 85 (316)
T COG0540 11 ISIEDLSREELELLLDTADEFKAVARAEKKLD--LLKGKVVANLFFEPSTRTRLSFETAMK---RLGADVVNFSDSESSS 85 (316)
T ss_pred echHhCCHHHHHHHHHHHHHHHHhhhccCCcc--hhcCcEEEEEEecCCCchhhhHHHHHH---HcCCcEEeecCCcccc
Confidence 35677889999887665544321 111111 110 233333 333343344432333 5699999988888888
Q ss_pred CCCCcHHHHH---HhCCCC---CCCCHHHHHHHHHhc-CceeEEecc---chhcHH--hHHHHhhhcccCCCCCCCCchh
Q 013432 191 KGGVTEEQML---KFMGAS---TNLSVLQAKELLEDE-EIGFAYVSL---REARPS--LYSLIGLREHIKKRPPVATSEK 258 (443)
Q Consensus 191 k~Gs~~aDvL---eaLGi~---i~~s~~~~~~~Le~~-g~gf~fl~a---~~~~Pa--~~~l~~vR~~Lg~RtPL~np~~ 258 (443)
+-|-|++|-+ ++.|++ +-...+.+.+.+.+. +.. -.+.+ ..-||. +-.++.+|+++|--.-|.
T Consensus 86 ~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~~~~~-pvINaGDG~~qHPTQ~LLDl~TI~~~~G~~~gl~---- 160 (316)
T COG0540 86 KKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFSGVN-PVINAGDGSHQHPTQALLDLYTIREEFGRLDGLK---- 160 (316)
T ss_pred cccccHHHHHHHHHhhCCCEEEEeCccccHHHHHHHhcCCC-ceEECCCCCCCCccHHHHHHHHHHHHhCCcCCcE----
Confidence 8899999864 556766 335667777777661 221 12322 456775 888999999999532221
Q ss_pred hhhhhhccCCCeEEEe-ecCCCchHHHHHHHHHcCC
Q 013432 259 VQQFVRAQGREAIVAG-FYHEGYEEPLLMLMKRRGV 293 (443)
Q Consensus 259 ~~~~lnp~~~~~~v~G-V~h~~~~~~~a~~l~~lG~ 293 (443)
..++| +-|-....-.+++|..+|.
T Consensus 161 -----------iaivGDlkhsRva~S~~~~L~~~ga 185 (316)
T COG0540 161 -----------IAIVGDLKHSRVAHSNIQALKRFGA 185 (316)
T ss_pred -----------EEEEccccchHHHHHHHHHHHHcCC
Confidence 33333 3444445556677777773
No 150
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=25.85 E-value=96 Score=28.11 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=47.7
Q ss_pred HHHHHHhcCCC---CCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 013432 70 GALREVLAGGH---LGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 138 (443)
Q Consensus 70 ~~L~kl~~g~~---Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~ 138 (443)
..+..+..+.. =+.++.++.++.++ ....+-..++-+.++=.++..|++|-..|++++++..
T Consensus 7 ~~~~~l~~~~~~~~~~~~~~~~~i~~~v-------~~~~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l 71 (170)
T PF05494_consen 7 DVLSILKDNKSKYKQDPEARRAKIEDIV-------DPYFDFERMARRVLGRYWRKASPAQRQRFVEAFKQLL 71 (170)
T ss_dssp HHHHHHHT-HHHHTT-HHHHHHHHHHHT-------GGGB-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccccccCCHHHHHHHHHHHH-------HHhCCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHH
Confidence 34444444442 24688999999999 7889999999999999999999999999999998753
No 151
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=25.00 E-value=4.2e+02 Score=22.32 Aligned_cols=62 Identities=19% Similarity=0.080 Sum_probs=51.4
Q ss_pred cccHHHHHHHHhcCC--CCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013432 65 EMRLVGALREVLAGG--HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFD 135 (443)
Q Consensus 65 G~~l~~~L~kl~~g~--~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~ 135 (443)
|..++..-+++..+. .+|..|.+...-.++ ...-+|.+ .+|-.+..||-|..|+..+.+.|-
T Consensus 22 ~~gWr~LAe~lg~~~~fr~S~~el~~cslkvl-------~p~gSPsk--~LL~~~~~rg~Tv~~Ll~~L~~Mg 85 (97)
T cd08783 22 GKGWRKLAELAGSRGRFRLSCLDLEQCSLKVL-------EPEGSPSR--SLLKLLGERGCTVTELSEFLQAME 85 (97)
T ss_pred cCCHHHHHHHHccCCccccCHHHHHHHHHHHh-------cCCCCchH--HHHHHHHHcCCcHHHHHHHHHHhh
Confidence 456778888888776 689999999888888 56667765 588889999999999999999885
No 152
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=24.87 E-value=52 Score=30.81 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=20.4
Q ss_pred ceEEcCCCCCCCccccchHHHHHHHhcCCCeEE
Q 013432 149 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCL 181 (443)
Q Consensus 149 vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~ 181 (443)
|-++||||-|+.| ++-.|+..|+++.
T Consensus 3 I~ITGTPGvGKTT-------~~~~L~~lg~~~i 28 (180)
T COG1936 3 IAITGTPGVGKTT-------VCKLLRELGYKVI 28 (180)
T ss_pred EEEeCCCCCchHH-------HHHHHHHhCCcee
Confidence 5679999999976 4555558899987
No 153
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=24.40 E-value=57 Score=26.44 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=15.5
Q ss_pred CCCCCCcHHHHHHhCCCCC
Q 013432 189 PPKGGVTEEQMLKFMGAST 207 (443)
Q Consensus 189 ssk~Gs~~aDvLeaLGi~i 207 (443)
.-..++|+.|++|+||||.
T Consensus 28 ~~~~~~tvkd~IEsLGVP~ 46 (81)
T PF14451_consen 28 PFDGGATVKDVIESLGVPH 46 (81)
T ss_pred ecCCCCcHHHHHHHcCCCh
Confidence 4456778899999999984
No 154
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=23.75 E-value=1.8e+02 Score=29.97 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=72.9
Q ss_pred CCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEecc--chhcHHhHHHHhhhcc-cCCCC----CCCCch
Q 013432 185 AEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSL--REARPSLYSLIGLREH-IKKRP----PVATSE 257 (443)
Q Consensus 185 nr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a--~~~~Pa~~~l~~vR~~-Lg~Rt----PL~np~ 257 (443)
=|+.||| |. +.-+.+|.++++..++.|....-+-. ..|.-.+.+|..+|+. ..++= ++..|.
T Consensus 126 KrASPSk-G~----------I~~~~dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~y 194 (338)
T PLN02460 126 KKASPSR-GV----------LRENFDPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAW 194 (338)
T ss_pred ccCCCCC-Cc----------cCCCCCHHHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHH
Confidence 3565666 66 56678999999999996544332222 5588889999999997 55432 666765
Q ss_pred hhhhhhhccCCCe--EEEeecCCCchHHHHHHHHHcCCceEEE-EecCC
Q 013432 258 KVQQFVRAQGREA--IVAGFYHEGYEEPLLMLMKRRGVHSGLV-VKGEE 303 (443)
Q Consensus 258 ~~~~~lnp~~~~~--~v~GV~h~~~~~~~a~~l~~lG~~~alV-v~G~e 303 (443)
.+. ....+++.. .+.++.++.-+..+.+.++.+|. .++| ||..+
T Consensus 195 QI~-eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGm-e~LVEVH~~~ 241 (338)
T PLN02460 195 QIY-YARSKGADAILLIAAVLPDLDIKYMLKICKSLGM-AALIEVHDER 241 (338)
T ss_pred HHH-HHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCC-eEEEEeCCHH
Confidence 443 233445533 35588888788888899999999 4655 88743
No 155
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=23.46 E-value=69 Score=22.76 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.8
Q ss_pred HHHhCCCCCCCCHHHHHHHHHh
Q 013432 199 MLKFMGASTNLSVLQAKELLED 220 (443)
Q Consensus 199 vLeaLGi~i~~s~~~~~~~Le~ 220 (443)
.++.||++...+.+++++...+
T Consensus 2 ~y~vLgl~~~~~~~~ik~~y~~ 23 (55)
T cd06257 2 YYDILGVPPDASDEEIKKAYRK 23 (55)
T ss_pred hHHHcCCCCCCCHHHHHHHHHH
Confidence 5788999999999999999888
No 156
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.13 E-value=8.8e+02 Score=25.40 Aligned_cols=156 Identities=11% Similarity=0.076 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcC-----CCHHHHHHH-HHHHHhcCC---CCC-CCCCCCc
Q 013432 80 HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNR-----ETDRELKAY-CLAFDDELG---PPP-VADVKSL 149 (443)
Q Consensus 80 ~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~Kg-----eT~eElag~-~~A~~~~~~---~~~-~~~~~~v 149 (443)
.++.+....+.+.+. ..++++.-.-.++--++-+. ++.+.+.-. ...+.+... +.. ...+..+
T Consensus 105 ~~~~~~~~~l~~~L~-------~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi 177 (388)
T PRK12723 105 EINHPTILKIEDILR-------ENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVF 177 (388)
T ss_pred ccCHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHhhccCccccCCCCeEE
Confidence 345555566666666 67788877777777654331 133333222 222222211 111 1112367
Q ss_pred eEEcCCCCCCCccccchHHHHHHHh---cCCCeEEeecCCCCCCCCCCcHHHHHHh----CCCCCC--CCHHHHHHHHHh
Q 013432 150 THYGEPYDGNTRFFRSTLFVAAVRS---CYGESCLLHGAEWMPPKGGVTEEQMLKF----MGASTN--LSVLQAKELLED 220 (443)
Q Consensus 150 D~~GtggDG~~t~nisT~l~A~vlA---a~Gv~V~kHGnr~~ssk~Gs~~aDvLea----LGi~i~--~s~~~~~~~Le~ 220 (443)
-.+|+.|.|+.|+-.- +++.+.. ..|.+|..-..+. -+.|+ .+-|.. +|+++. .+++++.+.|++
T Consensus 178 ~lvGptGvGKTTT~aK--LA~~~~~~~~~~g~~V~lit~Dt--~R~aa--~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 178 ILVGPTGVGKTTTIAK--LAAIYGINSDDKSLNIKIITIDN--YRIGA--KKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred EEECCCCCCHHHHHHH--HHHHHHhhhccCCCeEEEEeccC--ccHHH--HHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 7899999999862211 2222221 2477887655543 24444 333444 788744 566777776554
Q ss_pred c-CceeEEeccchhcHH-hHHHHhhhcccC
Q 013432 221 E-EIGFAYVSLREARPS-LYSLIGLREHIK 248 (443)
Q Consensus 221 ~-g~gf~fl~a~~~~Pa-~~~l~~vR~~Lg 248 (443)
. +.-+++++.+-.+|. ...+..+++.+.
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 3 466778887776663 223455555554
No 157
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=22.35 E-value=7.1e+02 Score=24.51 Aligned_cols=84 Identities=14% Similarity=0.096 Sum_probs=45.6
Q ss_pred CCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCC--cHHHHHHhCCCCCC-----CCHHHH-HHHH
Q 013432 147 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGV--TEEQMLKFMGASTN-----LSVLQA-KELL 218 (443)
Q Consensus 147 ~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs--~~aDvLeaLGi~i~-----~s~~~~-~~~L 218 (443)
..+-.+|.+|.|+.|.-. -.|..++..|.+|+.-..+. -+.|. .+....+..|+++- .+|..+ .+.+
T Consensus 73 ~vi~l~G~~G~GKTTt~a---kLA~~l~~~g~~V~li~~D~--~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA---KLANKLKKQGKSVLLAAGDT--FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred eEEEEECCCCCcHHHHHH---HHHHHHHhcCCEEEEEeCCC--CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 367778999999986222 23334567788998876553 22232 01223466676631 233222 1222
Q ss_pred ---HhcCceeEEeccchhcH
Q 013432 219 ---EDEEIGFAYVSLREARP 235 (443)
Q Consensus 219 ---e~~g~gf~fl~a~~~~P 235 (443)
...+.-+++++.|-.++
T Consensus 148 ~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHHHHCCCCEEEEeCCCCCc
Confidence 23446677777766555
No 158
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=22.17 E-value=3.3e+02 Score=25.88 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCC---CHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 013432 69 VGALREVLAGGHL---GYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 138 (443)
Q Consensus 69 ~~~L~kl~~g~~L---t~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~ 138 (443)
...+..+...+.. +.++.+..++..+ ...++-..++.+.++-.+|.-|+|+-..|++++++..
T Consensus 36 ~~vl~~l~~~~~~~~~~~~~~~~~v~~~l-------~p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~L 101 (211)
T PRK15117 36 QKTFDRLKNEQPKIRANPDYLRTIVDQEL-------LPYVQVKYAGALVLGRYYKDATPAQREAYFAAFREYL 101 (211)
T ss_pred HHHHHHHHhCHHhhccCHHHHHHHHHHHc-------cccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 3344444443322 5788888889998 7889999999999999999999999999999998754
No 159
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=21.94 E-value=75 Score=26.26 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=25.3
Q ss_pred CCCCcccccHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 013432 59 SGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVLP 95 (443)
Q Consensus 59 hpes~~G~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~ 95 (443)
++.+++|+.+..+.+++ .++.++.+.+++.+.+
T Consensus 59 ~~~~~~Gv~v~~I~~~l----~~~~~~v~~al~~L~~ 91 (102)
T PF08784_consen 59 QPNSEEGVHVDEIAQQL----GMSENEVRKALDFLSN 91 (102)
T ss_dssp ----TTTEEHHHHHHHS----TS-HHHHHHHHHHHHH
T ss_pred cCCCCCcccHHHHHHHh----CcCHHHHHHHHHHHHh
Confidence 67778899999988888 8899999999999984
No 160
>PRK09367 histidine ammonia-lyase; Provisional
Probab=21.80 E-value=5e+02 Score=28.29 Aligned_cols=113 Identities=16% Similarity=0.115 Sum_probs=63.3
Q ss_pred HHHHH--HhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 013432 70 GALRE--VLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVK 147 (443)
Q Consensus 70 ~~L~k--l~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~~ 147 (443)
|.|+. ..-|+.|+.++.+.+|-.-++.+++ | .-|-+++=+..+++.+..-..|+ +|...
T Consensus 79 nLi~sha~GvG~~l~~~~vRa~m~~Rln~l~~---G---------------~SGV~~ev~~~L~~~lN~~i~P~-VP~~G 139 (500)
T PRK09367 79 NLVLSHAAGVGEPLPEEVVRLMMLLRLNSLAR---G---------------HSGVRPEVIEALLALLNAGVTPV-IPEKG 139 (500)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcc---C---------------CCcCCHHHHHHHHHHHhCCCccc-CCCCC
Confidence 44443 4457789999999988666522111 1 45677777777776666544333 22211
Q ss_pred CceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCC-CCCCCHHHHHHH
Q 013432 148 SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGA-STNLSVLQAKEL 217 (443)
Q Consensus 148 ~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi-~i~~s~~~~~~~ 217 (443)
. +|..|| .++++-+.++=.|-.-+.+.++-+++ .++|+..|+ |+.+.+.+.-.+
T Consensus 140 S---vGaSGD-------L~pLahial~L~Geg~v~~~G~~~~a------~eal~~~gl~p~~l~~KegLAL 194 (500)
T PRK09367 140 S---VGASGD-------LAPLAHMALVLLGEGEAFYKGERLPA------AEALAKAGLEPVTLAAKEGLAL 194 (500)
T ss_pred C---cccccc-------HHHHHHHHHHHhCCCceeeCCEeecH------HHHHHHcCCCCcCCCCcchhHH
Confidence 1 233333 34445454445565555565554442 689999998 466666444333
No 161
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=21.76 E-value=96 Score=22.97 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=25.7
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHHh
Q 013432 198 QMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSL 237 (443)
Q Consensus 198 DvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa~ 237 (443)
|.++.||++.+.+.+++.+...+ . +..+||-.
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~--l------~~~~HPD~ 32 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRR--L------SKQYHPDK 32 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHH--H------HHHTSTTT
T ss_pred ChHHHCCCCCCCCHHHHHHHHHh--h------hhcccccc
Confidence 46789999999999999999988 2 34567753
No 162
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=21.75 E-value=1.4e+02 Score=29.43 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=38.1
Q ss_pred ceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC-CCHHHHHHHHHh
Q 013432 149 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN-LSVLQAKELLED 220 (443)
Q Consensus 149 vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~-~s~~~~~~~Le~ 220 (443)
|-+||-||.|+.| ++++++.-+++..|..|.--=.+. -+ .+=++||+... -+.-+.++.+++
T Consensus 3 IaI~GKGG~GKTt--iaalll~~l~~~~~~~VLvVDaDp---d~-----nL~~~LGve~~~~~lg~~~e~~~k 65 (255)
T COG3640 3 IAITGKGGVGKTT--IAALLLKRLLSKGGYNVLVVDADP---DS-----NLPEALGVEEPMKYLGGKRELLKK 65 (255)
T ss_pred EEEecCCCccHHH--HHHHHHHHHHhcCCceEEEEeCCC---CC-----ChHHhcCCCCCCcccccHHHHHHH
Confidence 4579999999987 444445557777778888543333 22 35567888763 333344555444
No 163
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=21.34 E-value=3e+02 Score=19.36 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCC-CCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHH
Q 013432 68 LVGALREVLAGGH-LGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFL 114 (443)
Q Consensus 68 l~~~L~kl~~g~~-Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL 114 (443)
++.+|.++ |.. +|.+|+..+|..+= .|.+|.++-.+.-.++
T Consensus 10 ~~~~l~~~--g~~~~s~~e~~~l~~~~D----~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 10 FRRALSKL--GIKDLSEEEVDRLFREFD----TDGDGYISFDEFISMM 51 (54)
T ss_dssp HHHHHHHT--TSSSSCHHHHHHHHHHHT----TSSSSSEEHHHHHHHH
T ss_pred HHHHHHHh--CCCCCCHHHHHHHHHhcc----cCCCCCCCHHHHHHHH
Confidence 55566333 666 99999999998884 4557777766665554
No 164
>PRK08356 hypothetical protein; Provisional
Probab=20.95 E-value=68 Score=29.64 Aligned_cols=33 Identities=18% Similarity=0.038 Sum_probs=24.7
Q ss_pred CceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCC
Q 013432 148 SLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEW 187 (443)
Q Consensus 148 ~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~ 187 (443)
.+-+||++|.|+.| +|-.++..|+++..+|++.
T Consensus 7 ~i~~~G~~gsGK~t-------~a~~l~~~g~~~is~~~~~ 39 (195)
T PRK08356 7 IVGVVGKIAAGKTT-------VAKFFEEKGFCRVSCSDPL 39 (195)
T ss_pred EEEEECCCCCCHHH-------HHHHHHHCCCcEEeCCCcc
Confidence 45679999999986 3333367899999998754
No 165
>PRK09875 putative hydrolase; Provisional
Probab=20.89 E-value=2.7e+02 Score=27.94 Aligned_cols=98 Identities=10% Similarity=0.058 Sum_probs=55.3
Q ss_pred HhcCCCHHHHHHH-HHHHHhcCCCCCCCCCCCceEEcCCCCCCCcc--ccchHHHHHHHhcCCCeEEeecCCCCCCCCCC
Q 013432 118 RMNRETDRELKAY-CLAFDDELGPPPVADVKSLTHYGEPYDGNTRF--FRSTLFVAAVRSCYGESCLLHGAEWMPPKGGV 194 (443)
Q Consensus 118 r~KgeT~eElag~-~~A~~~~~~~~~~~~~~~vD~~GtggDG~~t~--nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs 194 (443)
.++..|.|||+.. ++-+.+-...-.+ ...+|=.||+.+...... .+-= .+|....+.|+||.-|-..+ ..|.
T Consensus 92 ~~~~~~~e~la~~~i~ei~~Gi~gt~i-kaGvIGeiG~~~~~it~~E~kvl~-Aaa~a~~~TG~pi~~Ht~~~---~~g~ 166 (292)
T PRK09875 92 HVATRSVQELAQEMVDEIEQGIDGTEL-KAGIIAEIGSSEGKITPLEEKVFI-AAALAHNQTGRPISTHTSFS---TMGL 166 (292)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhccCCC-cccEEEEEecCCCCCCHHHHHHHH-HHHHHHHHHCCcEEEcCCCc---cchH
Confidence 4558899999875 3444433221111 122443577766432211 1211 35666677799999995543 2455
Q ss_pred cHHHHHHhCCCCCC----------CCHHHHHHHHHh
Q 013432 195 TEEQMLKFMGASTN----------LSVLQAKELLED 220 (443)
Q Consensus 195 ~~aDvLeaLGi~i~----------~s~~~~~~~Le~ 220 (443)
...|+|+..|++.+ .+++...++++.
T Consensus 167 e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~ 202 (292)
T PRK09875 167 EQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDL 202 (292)
T ss_pred HHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHc
Confidence 45788888899521 255666666654
No 166
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=20.67 E-value=1.4e+02 Score=31.20 Aligned_cols=61 Identities=13% Similarity=-0.055 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCCceEEc-CCCCCCCccccchHHHHHHHhcCCCeEEeec
Q 013432 121 RETDRELKAYCLAFDDELGPPPVADVKSLTHYG-EPYDGNTRFFRSTLFVAAVRSCYGESCLLHG 184 (443)
Q Consensus 121 geT~eElag~~~A~~~~~~~~~~~~~~~vD~~G-tggDG~~t~nisT~l~A~vlAa~Gv~V~kHG 184 (443)
|-|.+||..+.+.+.+...+.+-....+|-++. -||.|+.| ++.-.|..+|..|.+|+.-=
T Consensus 81 ~ftL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT---~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 81 GYTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTS---VSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred CcCHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHH---HHHHHHHHHHhcCCCeEEEc
Confidence 789999998877775432221111112333322 38888887 33335566788999999764
Done!