Query 013432
Match_columns 443
No_of_seqs 265 out of 1513
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkm_A Anthranilate phosphorib 100.0 9.7E-83 3.3E-87 645.4 33.8 336 66-442 4-342 (346)
2 1vqu_A Anthranilate phosphorib 100.0 6.6E-82 2.2E-86 643.8 36.0 340 60-440 17-373 (374)
3 3r88_A Anthranilate phosphorib 100.0 1.3E-81 4.4E-86 642.3 37.2 337 67-443 25-370 (377)
4 1khd_A Anthranilate phosphorib 100.0 7.9E-82 2.7E-86 637.4 34.8 331 65-438 10-344 (345)
5 2elc_A Trp D, anthranilate pho 100.0 6.2E-81 2.1E-85 627.5 34.7 324 70-440 2-328 (329)
6 1o17_A Anthranilate PRT, anthr 100.0 1.1E-80 3.8E-85 629.0 32.0 331 66-442 1-333 (345)
7 3h5q_A PYNP, pyrimidine-nucleo 100.0 3.2E-61 1.1E-65 496.9 28.1 297 65-441 3-321 (436)
8 1brw_A PYNP, protein (pyrimidi 100.0 4E-60 1.4E-64 489.7 31.7 293 66-441 1-318 (433)
9 1uou_A Thymidine phosphorylase 100.0 7.8E-60 2.7E-64 491.0 31.4 292 67-441 29-346 (474)
10 2tpt_A Thymidine phosphorylase 100.0 3.2E-60 1.1E-64 491.3 24.4 304 66-441 2-322 (440)
11 2dsj_A Pyrimidine-nucleoside ( 100.0 6.5E-59 2.2E-63 478.1 25.2 294 66-441 1-311 (423)
12 1i1q_B Anthranilate synthase c 98.4 6.9E-08 2.3E-12 88.9 2.6 55 22-76 128-190 (192)
13 1qdl_B Protein (anthranilate s 98.4 9.5E-08 3.2E-12 88.2 2.6 52 22-73 132-193 (195)
14 3r75_A Anthranilate/para-amino 98.3 2.7E-07 9.2E-12 100.1 2.9 55 25-79 576-637 (645)
15 2ywb_A GMP synthase [glutamine 98.2 8.2E-07 2.8E-11 93.7 4.1 61 24-84 124-193 (503)
16 2ywj_A Glutamine amidotransfer 98.1 5.4E-07 1.8E-11 82.2 1.6 52 23-75 126-183 (186)
17 2vpi_A GMP synthase; guanine m 98.1 6.8E-07 2.3E-11 84.2 2.4 54 22-76 148-211 (218)
18 1gpm_A GMP synthetase, XMP ami 98.1 1.3E-06 4.6E-11 92.6 4.1 63 23-85 140-212 (525)
19 2a9v_A GMP synthase; structura 98.1 1.2E-06 4E-11 82.1 2.7 53 23-75 138-199 (212)
20 1wl8_A GMP synthase [glutamine 98.1 1.2E-06 4E-11 80.2 2.5 51 25-75 125-186 (189)
21 3tqi_A GMP synthase [glutamine 98.0 1.2E-06 4.1E-11 93.0 2.4 60 23-82 143-212 (527)
22 3uow_A GMP synthetase; structu 98.0 2E-06 7E-11 91.8 2.8 63 22-84 167-239 (556)
23 3fij_A LIN1909 protein; 11172J 98.0 2.1E-06 7E-11 82.7 2.3 56 22-77 174-242 (254)
24 1a9x_B Carbamoyl phosphate syn 97.9 4.1E-06 1.4E-10 85.3 3.7 53 24-76 309-374 (379)
25 4gud_A Imidazole glycerol phos 97.8 1.8E-06 6.2E-11 80.2 -0.7 54 22-80 146-207 (211)
26 2vxo_A GMP synthase [glutamine 97.8 9.3E-06 3.2E-10 88.8 4.2 62 23-85 154-225 (697)
27 1o1y_A Conserved hypothetical 97.8 6.9E-06 2.4E-10 78.3 2.3 51 22-74 146-199 (239)
28 1gpw_B Amidotransferase HISH; 97.7 2.8E-06 9.5E-11 78.4 -1.5 52 22-75 137-197 (201)
29 2v4u_A CTP synthase 2; pyrimid 97.7 1.4E-05 4.9E-10 78.3 3.4 49 28-76 214-275 (289)
30 3m3p_A Glutamine amido transfe 97.7 9.9E-06 3.4E-10 78.0 1.8 41 22-63 136-180 (250)
31 2ywd_A Glutamine amidotransfer 97.7 1.2E-05 4E-10 73.3 2.1 52 23-75 134-189 (191)
32 2w7t_A CTP synthetase, putativ 97.7 1.2E-05 4.2E-10 78.1 2.2 52 26-77 183-256 (273)
33 2nv0_A Glutamine amidotransfer 97.7 1.2E-05 4.1E-10 73.8 1.8 54 23-77 132-189 (196)
34 1l9x_A Gamma-glutamyl hydrolas 97.6 1.4E-05 4.6E-10 79.5 1.3 57 23-79 189-280 (315)
35 1q7r_A Predicted amidotransfer 97.6 2.3E-05 7.8E-10 73.5 2.2 53 23-76 154-210 (219)
36 2iss_D Glutamine amidotransfer 97.5 2.5E-05 8.7E-10 72.5 1.1 50 23-73 152-205 (208)
37 1ka9_H Imidazole glycerol phos 97.4 1.3E-05 4.6E-10 73.8 -1.0 48 23-73 139-198 (200)
38 3d54_D Phosphoribosylformylgly 97.4 6.6E-05 2.2E-09 69.4 3.6 50 24-75 140-211 (213)
39 3l7n_A Putative uncharacterize 97.4 4.6E-05 1.6E-09 72.2 1.6 51 22-74 139-193 (236)
40 1s1m_A CTP synthase; CTP synth 97.1 0.00014 5E-09 77.1 2.3 43 34-76 483-537 (545)
41 3nva_A CTP synthase; rossman f 97.0 0.00021 7.3E-09 75.1 2.4 42 34-75 480-532 (535)
42 1vco_A CTP synthetase; tetrame 97.0 0.00017 6E-09 76.5 1.5 45 32-76 482-544 (550)
43 1jvn_A Glutamine, bifunctional 96.3 0.00027 9.3E-09 75.4 -2.6 52 23-74 147-214 (555)
44 2abw_A PDX2 protein, glutamina 96.2 0.0011 3.7E-08 62.1 1.2 50 26-75 154-213 (227)
45 2vdj_A Homoserine O-succinyltr 87.1 0.27 9.4E-06 48.2 2.6 47 31-78 203-254 (301)
46 2h2w_A Homoserine O-succinyltr 82.2 0.73 2.5E-05 45.4 3.1 44 35-78 217-265 (312)
47 1j8m_F SRP54, signal recogniti 62.5 86 0.003 29.8 12.5 155 67-235 6-193 (297)
48 4ex8_A ALNA; alpha/beta/alpha- 62.3 4.3 0.00015 39.6 3.0 143 102-256 61-238 (316)
49 1vkm_A Conserved hypothetical 56.7 14 0.00047 35.8 5.4 121 119-251 71-221 (297)
50 3ol3_A Putative uncharacterize 55.7 72 0.0025 26.2 8.9 55 78-138 41-99 (107)
51 2m0n_A Putative uncharacterize 53.0 57 0.0019 27.0 7.8 55 78-138 38-99 (112)
52 2kvc_A Putative uncharacterize 49.2 23 0.0008 28.9 4.9 54 79-138 37-90 (103)
53 2lky_A Uncharacterized protein 45.9 30 0.001 28.7 5.1 55 78-138 38-92 (112)
54 3fyb_A Protein of unknown func 45.9 29 0.001 28.1 4.8 50 68-117 47-99 (104)
55 1zu4_A FTSY; GTPase, signal re 44.9 79 0.0027 30.5 9.0 110 68-187 18-143 (320)
56 1vma_A Cell division protein F 44.0 1.1E+02 0.0039 29.2 9.9 106 68-186 30-141 (306)
57 2px0_A Flagellar biosynthesis 41.9 88 0.003 29.7 8.7 129 102-237 51-197 (296)
58 1ejd_A MURA, EPT, UDP-N-acetyl 40.7 13 0.00045 37.4 2.7 170 110-301 26-217 (419)
59 2ej7_A HCG3 gene; HCG3 protein 36.0 23 0.0008 26.8 2.9 36 191-236 5-40 (82)
60 4gim_A Pseudouridine-5'-phosph 34.8 83 0.0029 30.9 7.1 138 103-251 81-252 (335)
61 1l6x_B Minimized B-domain of p 34.6 91 0.0031 20.2 4.9 32 106-137 2-33 (34)
62 2v3c_C SRP54, signal recogniti 32.1 2.1E+02 0.0073 28.7 10.1 160 67-236 7-194 (432)
63 3kl4_A SRP54, signal recogniti 31.2 1.9E+02 0.0065 29.2 9.6 173 65-247 2-210 (433)
64 1iur_A KIAA0730 protein; DNAJ 31.1 23 0.00077 27.9 2.0 38 191-236 10-47 (88)
65 2yua_A Williams-beuren syndrom 30.8 38 0.0013 26.8 3.4 32 197-236 17-48 (99)
66 1rf6_A 5-enolpyruvylshikimate- 29.9 61 0.0021 32.6 5.6 102 107-209 21-138 (427)
67 2lv7_A Calcium-binding protein 28.6 58 0.002 25.5 4.2 51 79-134 28-81 (100)
68 2dmx_A DNAJ homolog subfamily 28.1 22 0.00076 27.7 1.5 37 190-236 4-40 (92)
69 2dn9_A DNAJ homolog subfamily 28.1 30 0.001 26.0 2.2 32 197-236 7-38 (79)
70 2kn2_A Calmodulin; S MAPK phos 27.8 1.8E+02 0.0061 21.2 7.2 47 68-120 31-77 (92)
71 2ctp_A DNAJ homolog subfamily 26.2 34 0.0012 25.7 2.2 24 197-220 7-30 (78)
72 3dm5_A SRP54, signal recogniti 25.4 2E+02 0.0069 29.2 8.5 159 67-235 9-195 (443)
73 2xxa_A Signal recognition part 24.1 2E+02 0.0067 29.0 8.1 152 68-233 9-194 (433)
74 4fqd_A NIKO protein; beta/alph 23.4 39 0.0013 34.8 2.7 86 123-208 58-156 (479)
75 2guz_A Mitochondrial import in 22.9 74 0.0025 23.5 3.6 34 195-236 12-46 (71)
76 2ffh_A Protein (FFH); SRP54, s 22.6 4.5E+02 0.015 26.3 10.5 151 68-232 9-190 (425)
77 2pqc_A 3-phosphoshikimate 1-ca 22.3 76 0.0026 32.0 4.6 100 109-209 26-141 (445)
78 2l48_A N-acetylmuramoyl-L-alan 22.3 1.5E+02 0.005 23.3 5.2 38 268-306 19-56 (85)
79 2o35_A Hypothetical protein DU 22.0 63 0.0022 26.2 3.0 49 68-116 48-99 (105)
80 3nvs_A 3-phosphoshikimate 1-ca 21.1 1.1E+02 0.0038 31.0 5.6 99 110-208 50-165 (450)
81 2qgu_A Probable signal peptide 21.1 1.2E+02 0.0042 27.4 5.4 63 68-137 39-104 (211)
82 2ctr_A DNAJ homolog subfamily 20.9 50 0.0017 25.4 2.3 32 197-236 7-38 (88)
No 1
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=100.00 E-value=9.7e-83 Score=645.40 Aligned_cols=336 Identities=21% Similarity=0.296 Sum_probs=291.8
Q ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCC
Q 013432 66 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 145 (443)
Q Consensus 66 ~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~ 145 (443)
+..+++|+++.+|++||+||++++|+.|| +|+++|.|+||||+|+|+||||+|||+||++||++++.++++++
T Consensus 4 ~~~~e~l~~~~~~~~Lt~eEa~~~~~~il-------~G~~~d~QiaAfL~alr~kget~eEi~g~~~am~~~~~~v~~~~ 76 (346)
T 4hkm_A 4 ITPQQALQRTIEHREIFHDEMVDLMRQIM-------RGEVSDAMVSAILTGLRVKKETIGEIAGAATVMREFSRRVEVTD 76 (346)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCSC
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCCCC
Confidence 45889999999999999999999999999 99999999999999999999999999999999999998887654
Q ss_pred -CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCce
Q 013432 146 -VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIG 224 (443)
Q Consensus 146 -~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~g 224 (443)
.+.||+|||||||.+||||||+ +|+|+|+||+||+|||||++||++|| +|+||+||+++++++++++++|++ .|
T Consensus 77 ~~~~vD~~gTGGdg~~t~niSt~-~a~v~Aa~G~~V~khG~r~~ss~~Gs--aD~LeaLG~~~~ls~~~~~~~l~~--~g 151 (346)
T 4hkm_A 77 RRHMVDIVGTGGDGSHTFNISTC-AMFVAAAGGAKVAKHGNRSVSSKSGS--ADALEALGAVIELQPEQVAASLAQ--TG 151 (346)
T ss_dssp CTTEEEEECC------CCCHHHH-HHHHHHHTTCEEEEEC---------C--HHHHHTTTCCCCCCHHHHHHHHHH--HS
T ss_pred CccceeecCCCCCCccccCcHHH-HHHHHHhcCCCeeecCCCCCCCCcCH--HHHHHHcCCCcccCHHHHHHHHHh--cC
Confidence 3479999999999999999998 99999999999999999999999999 899999999999999999999999 66
Q ss_pred eEEeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCC
Q 013432 225 FAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEG 304 (443)
Q Consensus 225 f~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG 304 (443)
|+|+++|.|||+|++++++|++||+||+++....+ +||+++++||+||||++|.++++++++.+|.++++||||.||
T Consensus 152 ~~fl~a~~~~Pa~k~l~~~R~~lg~rT~fn~lgpL---~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~a~vv~g~~G 228 (346)
T 4hkm_A 152 IGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPL---TNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDG 228 (346)
T ss_dssp EEEECHHHHCGGGGGTHHHHHHHCSCCTHHHHGGG---CCTTCCSEEEEECSSTHHHHHHHHHHHHTTCSEEEEEEETTT
T ss_pred cchhchhhhChhHHHHhhheeccCCCchhhhcccc---cCCCCCcceEeeccCHHHhHHHHHHHHHcCCCeEEEEecCCC
Confidence 77788999999999999999999999988776554 688888999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHHh
Q 013432 305 ALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAAL 382 (443)
Q Consensus 305 ~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~iL 382 (443)
+||+++.+ +|.+++ .+|++.+ |+++|+|||+++++.+.+ ++++.+|+++++++|
T Consensus 229 ~dEis~~~---------------------~t~v~~~~~g~i~~---~~i~P~d~Gl~~~~~~~~~~g~~~e~a~~~~~vl 284 (346)
T 4hkm_A 229 MDELSLGA---------------------GTLVGELRDGQVHE---YEVHPEDFGIAMSASRNLKVADAAESRAMLLQVL 284 (346)
T ss_dssp BSSCCSSS---------------------CEEEEEEETTEEEE---EEECGGGGTCCCCC---------CCHHHHHHHHH
T ss_pred chhhhhcc---------------------CceEEEEeCCceeE---ecCCHHHcCCccCcccccCCCCHHHHHHHHHHHH
Confidence 99998653 355554 5887764 999999999999887765 789999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhccC
Q 013432 383 RGEKGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHKL 442 (443)
Q Consensus 383 ~G~~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~~ 442 (443)
+|++++.+|.|++|||++||++| ++.|++||+++|+++|+||+|+++|++|+++++++
T Consensus 285 ~g~~~~~~d~v~lnaa~~L~~~g--~a~sl~eg~~~A~~~l~sG~A~~~l~~~i~~s~~~ 342 (346)
T 4hkm_A 285 DNVPGPALDIVALNAGAALYVAG--VADSIADGIVRARQVLADGSARACLDAYVAFTQQA 342 (346)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985 89999999999999999999999999999999864
No 2
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=100.00 E-value=6.6e-82 Score=643.82 Aligned_cols=340 Identities=19% Similarity=0.261 Sum_probs=301.0
Q ss_pred CCC--cccccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 013432 60 GND--PREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDE 137 (443)
Q Consensus 60 pes--~~G~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~ 137 (443)
|-| +.-|+++++|+++.+|++||++|++++|+.|| +|+++|.|+||||+++|+||||+|||+||++||+++
T Consensus 17 ~~~~~~~~~~~~~~i~kl~~G~~Lt~eEa~~~~~~il-------~G~~~~~QiaAfL~Alr~kGet~eEiag~~~am~~~ 89 (374)
T 1vqu_A 17 PTSTQESSTSWYLLLQQLIDGESLSRSQAAELMQGWL-------SEAVPPELSGAILTALNFKGVSADELTGMAEVLQSQ 89 (374)
T ss_dssp --------CCTHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCccCCHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 444 45577999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCC--------CCCC--CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCC
Q 013432 138 LGPP--------PVAD--VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGAST 207 (443)
Q Consensus 138 ~~~~--------~~~~--~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i 207 (443)
+.++ ++++ .+.||+|||||||.+||||||+ +|+|+|++|+||+|||||++||++|| +|+||+||+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~-~A~v~Aa~Gv~VaKHGnR~~ss~~Gs--aDvLEaLGv~~ 166 (374)
T 1vqu_A 90 SKMGTGENYSQLPITNSPFSIIDTCGTGGDGSSTFNISTA-VAFVAAAYGVPVAKHGNRSASSLTGS--ADVLEALGVNL 166 (374)
T ss_dssp CCC-----------CCSSSCCEEEEECC---CCBCCHHHH-HHHHHHHTTCCEEEEEECC--CTTCH--HHHHHHTTCCT
T ss_pred CCccccccccccCccccCCCeeEEeCCCCCCCCccchHHH-HHHHHHhCCCCEEEECCCCCCCCCCH--HHHHHhCCCCC
Confidence 9877 4542 3579999999999999999998 99999999999999999999999998 99999999999
Q ss_pred CCCHHHHHHHHHhcCceeEEeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHH
Q 013432 208 NLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLML 287 (443)
Q Consensus 208 ~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~ 287 (443)
++++++++++|++ .||+|+++|.|||+|++++++|++||+||+++....+ +||+++++||+||||++|.++|+++
T Consensus 167 ~~~~e~~~~~l~~--~gi~fl~a~~~hPa~k~l~~~R~~lg~rTvfNilgpL---~NPa~~~~qv~GV~~~~~~~~~a~~ 241 (374)
T 1vqu_A 167 GASPEKVQAALQE--VGITFLFAPGWHPALKAVATLRRTLRIRTVFNLLGPL---VNPLRPTGQVVGLFTPKLLTTVAQA 241 (374)
T ss_dssp TCCHHHHHHHHHH--TSEEEEEETTSSGGGGGGHHHHHHHCSCCHHHHHGGG---CCTTCCSEEEEECSCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHH--CCEEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCCCCceEEeecCHHHHHHHHHH
Confidence 9999999999999 6677778999999999999999999999977664433 6777788999999999999999999
Q ss_pred HHHcCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCC
Q 013432 288 MKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPR 366 (443)
Q Consensus 288 l~~lG~~~alVv~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~ 366 (443)
++.+|.++++||||.+|+||+++.+ +|.|++ .+|++. +|+|+|+|||++.+++++
T Consensus 242 l~~lG~~~alVv~G~~G~dE~s~~~---------------------~t~v~~~~~g~~~---~~~i~p~d~Gl~~~~~~~ 297 (374)
T 1vqu_A 242 LDNLGKQKAIVLHGRERLDEAGLGD---------------------LTDLAVLSDGELQ---LTTINPQEVGVTPAPIGA 297 (374)
T ss_dssp HHHTTCSEEEEEEETTTBSSCCSSS---------------------CEEEEEEETTEEE---EEEECGGGGTCCCCCGGG
T ss_pred HHHcCCCeEEEEECCCCccccccCC---------------------ceEEEEEeCCEEE---EEEECHHHCCCccccccc
Confidence 9999999999999999999998553 356654 478765 499999999999888776
Q ss_pred c-CCCHHHHHHHHHHHhCCCCCChHH-HHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Q 013432 367 A-DRSVSKNIELGLAALRGEKGPTYD-RIVLNAGMVDHLLGCDGAE--DVSVAMDRAREAIDSGKALKRLLNYIKISH 440 (443)
Q Consensus 367 ~-~~~~~~na~~~~~iL~G~~~~~~d-~v~lNAa~aL~~~g~g~~~--~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~ 440 (443)
+ ++++.+|+++++++|+|+.++.+| .|++|||++||++| ++. ++++|+++|+++|+||+|+++|++|+++++
T Consensus 298 l~~g~~~e~a~~~~~vL~G~~~~~~d~~v~~naa~~L~~~g--~~~~~~~~eg~~~A~~~i~sG~A~~~l~~~v~~~~ 373 (374)
T 1vqu_A 298 LRGGDVQENAEILKAVLQGKGTQAQQDAVALNAALALQVAG--AVPLLDHAQGVSVAKEILQTGTAWAKLAQLVYFLG 373 (374)
T ss_dssp GBCCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT--SSCTTCHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 5 789999999999999998778899 99999999999986 788 999999999999999999999999999886
No 3
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=100.00 E-value=1.3e-81 Score=642.27 Aligned_cols=337 Identities=19% Similarity=0.239 Sum_probs=310.2
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCC-
Q 013432 67 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD- 145 (443)
Q Consensus 67 ~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~- 145 (443)
++.++|+++.+|++||++|++++|+.|| +|+++|.|+||||+|+|+||||+|||+||++||++++.+++++.
T Consensus 25 t~~~il~~l~~g~~Ls~eEa~~~~~~i~-------~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~v~~~~~ 97 (377)
T 3r88_A 25 SWPQILGRLTDNRDLARGQAAWAMDQIM-------TGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTV 97 (377)
T ss_dssp CHHHHHHHHHTTCCCCTTHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCTTCS
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCcCCCccC
Confidence 5999999999999999999999999999 99999999999999999999999999999999999998887643
Q ss_pred -CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCce
Q 013432 146 -VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIG 224 (443)
Q Consensus 146 -~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~g 224 (443)
.+.||+|||||||.+||||||+ +|+|+|++|+||+|||||++||++|| +|+||+||+++++++++++++|++ .|
T Consensus 98 ~~~~vD~~gTGGdg~~T~niSt~-~A~v~Aa~Gv~VaKHGnR~~ss~~Gs--aDvLEaLGv~~~l~~e~~~~~l~~--~g 172 (377)
T 3r88_A 98 PDDAVDVVGTGGDGVNTVNLSTM-AAIVVAAAGVPVVKHGNRAASSLSGG--ADTLEALGVRIDLGPDLVARSLAE--VG 172 (377)
T ss_dssp CTTCEEEEECCCCSCCBCCHHHH-HHHHHHHTTCCEEEEECCCSSSSCCH--HHHHHHTTCCCCCCHHHHHHHHHH--HS
T ss_pred CCCCeEEeCCCCCCcCccccHHH-HHHHHHhcCCeEEeECCCCCCCcccH--HHHHHHcCCCcccchHHHHHHHHH--hc
Confidence 3579999999999999999998 99999999999999999999999999 899999999999999999999999 66
Q ss_pred eEEeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCC
Q 013432 225 FAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEG 304 (443)
Q Consensus 225 f~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG 304 (443)
|+|+++|.|||+|++++++|++||+||+++....+ +||+++++||+||||++|.++|+++++.+| ++++||||.||
T Consensus 173 i~fl~a~~~hPa~k~l~~vR~~Lg~rTifN~lgpL---~NPa~~~~~liGv~~~~l~~~~a~~l~~~~-~~a~vv~G~dG 248 (377)
T 3r88_A 173 IGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPL---TNPARPRAGLIGCAFADLAEVMAGVFAARR-SSVLVVHGDDG 248 (377)
T ss_dssp EEEEEHHHHCGGGHHHHHHHHHHCSCCGGGGHHHH---CCTTCCSEEEEECSCTTTHHHHHHHHHHTT-CEEEEEEETTS
T ss_pred cccccchhhCHHHHHHHHHHHHhccCchhhhHHHh---cCcccccccccCCCCHHHhHHHHHHHHhcC-CeeEEecCCCC
Confidence 77788999999999999999999999988886554 788999999999999999999999999998 69999999999
Q ss_pred ccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHHh
Q 013432 305 ALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAAL 382 (443)
Q Consensus 305 ~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~iL 382 (443)
+||+++.+ +|.+++ .+|++.+ |+++|+|||+++++++++ ++++++|+++++++|
T Consensus 249 lDEis~~~---------------------~t~v~~~~~g~i~~---~~i~P~d~Gl~~~~~~~l~gg~~~ena~~~~~vL 304 (377)
T 3r88_A 249 LDELTTTT---------------------TSTIWRVAAGSVDK---LTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVL 304 (377)
T ss_dssp CSSCCSSS---------------------CEEEEEEETTEEEE---EEECGGGGTCCCCCGGGGBCCSHHHHHHHHHHHH
T ss_pred Cceeeccc---------------------ccceEEEeeceeEE---EeccccccCCCcCCHHhccCCCHHHHHHHHHHHH
Confidence 99998553 355654 5887764 999999999999998885 789999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhccCC
Q 013432 383 RGEKGPTYDRIVLNAGMVDHLLGC-----DGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHKLK 443 (443)
Q Consensus 383 ~G~~~~~~d~v~lNAa~aL~~~g~-----g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~~~ 443 (443)
+|++++.+|.|++|||++||+.|. +.+.+++||+++|+++|+||+|+++|++|+++|++++
T Consensus 305 ~G~~~~~~d~v~lNaa~~l~~~g~~~~~~~~~~sl~eG~~~A~e~l~sG~A~~kl~~~i~~s~~~~ 370 (377)
T 3r88_A 305 GGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQIL 370 (377)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHTC-
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998761 1134799999999999999999999999999999874
No 4
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=100.00 E-value=7.9e-82 Score=637.37 Aligned_cols=331 Identities=18% Similarity=0.257 Sum_probs=297.2
Q ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCC
Q 013432 65 EMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA 144 (443)
Q Consensus 65 G~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~ 144 (443)
.|+++++|+++.+|++||++|++++|+.|| +|+++|.|+||||+++|+||||+|||+||++||++++.+++++
T Consensus 10 ~~~~~~~i~kl~~g~~Lt~eEa~~~~~~il-------~g~~~~~QiaAfL~alr~kget~eEiag~~~am~~~~~~~~~~ 82 (345)
T 1khd_A 10 IFTHQPILEKLFKSQSMTQEESHQLFAAIV-------RGELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRP 82 (345)
T ss_dssp --CCHHHHHHHHTTCCCCHHHHHHHHHHHT-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred ccCHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCC
Confidence 356899999999999999999999999999 9999999999999999999999999999999999999888764
Q ss_pred CCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCC-CCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCc
Q 013432 145 DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPP-KGGVTEEQMLKFMGASTNLSVLQAKELLEDEEI 223 (443)
Q Consensus 145 ~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ss-k~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~ 223 (443)
..+.||+|||||||.+|||+||+ +|+|+|++|+||+|||||++|| |+|| +|+||+||++++++++++.++|++ .
T Consensus 83 ~~~~vD~~gTGGdg~~tfNiSt~-~A~v~Aa~Gv~VakHGnr~~ss~~~Gs--aDvLeaLGv~~~~~~~~~~~~l~~--~ 157 (345)
T 1khd_A 83 DYDFADIVGTGGDGTNSINISTA-SAFVAASCGAKVAKHGNRSVCQPLAGS--CDLLQAFGIRLDMSAEDSRQALDD--L 157 (345)
T ss_dssp SSCCEEEEECCCCSSCBCCCHHH-HHHHHHHHTCCEEEEECC-----------CHHHHHTTCCTTCCHHHHHHHHHH--H
T ss_pred CCCeeeecCCCCCCCCccchHHH-HHHHHHhCCCcEEEeCCCCCCCCcccH--HHHHHhCCCCCCCCHHHHHHHHHH--C
Confidence 33589999999999999999998 9999999999999999999999 9999 899999999999999999999999 6
Q ss_pred eeEEeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCC
Q 013432 224 GFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEE 303 (443)
Q Consensus 224 gf~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~e 303 (443)
||+|+++|.|||+|++++++|++||+||+++....+ +||+++++||+|||||+|.++|+++++.+|.++++|||| |
T Consensus 158 gi~fl~a~~~hPa~k~l~~~R~~Lg~rTvfn~lgpL---~nPa~~~~~v~GV~~~~~~~~~a~~l~~lG~~~a~vv~G-d 233 (345)
T 1khd_A 158 NVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPL---INPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHG-G 233 (345)
T ss_dssp SEEEEEHHHHCGGGGGGHHHHHHHCSCCTHHHHGGG---CCTTCCSEEEEECSSGGGHHHHHHHHHHTTCSEEEEEEE-T
T ss_pred CEEEEehhhhCHHHHHHHHHHHHhCCCCHHHHHHHh---cCCcCCCeEEEeecCHHHHHHHHHHHHHhCCCeEEEEeC-C
Confidence 677788999999999999999999999988875443 688888999999999999999999999999999999999 9
Q ss_pred CccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHH
Q 013432 304 GALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAA 381 (443)
Q Consensus 304 G~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~i 381 (443)
|+||+|+.++ |.+++ .+|++.+ |+|+|++||+++++++++ ++++.+|+++++++
T Consensus 234 G~dEis~~~~---------------------t~v~~~~~g~i~~---~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~v 289 (345)
T 1khd_A 234 GMDEVAIHTP---------------------TQVAELNNGEIES---YQLSPQDFGLQSYSLNALQGGTPEENRDILARL 289 (345)
T ss_dssp TBSSCCSSSC---------------------EEEEEEETTEEEE---EEECGGGGTCCCBCGGGGBCCSHHHHHHHHHHH
T ss_pred CcceecCCCc---------------------eEEEEEeCCEEEE---EEECHHHcCCCcCCccccCCCCHHHHHHHHHHH
Confidence 9999986543 55654 5887764 999999999999988875 78999999999999
Q ss_pred hCCCCC-ChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHH
Q 013432 382 LRGEKG-PTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKI 438 (443)
Q Consensus 382 L~G~~~-~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~ 438 (443)
|+|+.+ +.+|.|++|||++||++| + +++++|+++|+++|+||+|+++|++|++.
T Consensus 290 L~G~~~~~~~d~v~~naa~~L~~~g--~-~~~~eg~~~A~~~i~sG~A~~~l~~~~~a 344 (345)
T 1khd_A 290 LQGKGDAAHARQVAANVALLLKLFG--Q-DNLRHNAQLALETIRSGTAFERVTALAAR 344 (345)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHTTT--C-CCHHHHHHHHHHHHHHTHHHHHHHHHHTC
T ss_pred HCCCCCccHHHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 999866 899999999999999975 7 89999999999999999999999999864
No 5
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=100.00 E-value=6.2e-81 Score=627.49 Aligned_cols=324 Identities=24% Similarity=0.333 Sum_probs=297.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 013432 70 GALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSL 149 (443)
Q Consensus 70 ~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~~~v 149 (443)
++|+++.+|++||++|++++|+.|| +|+++|.|+||||+++|+||||+|||+||++||++++.+++++..+.|
T Consensus 2 ~~l~k~~~g~~Lt~eEa~~~~~~i~-------~g~~~~~QiaAfL~alr~kget~~Eiag~~~am~~~~~~~~~~~~~~v 74 (329)
T 2elc_A 2 DAVKKAILGEVLEEEEAYEVMRALM-------AGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARPLRVHRRPLL 74 (329)
T ss_dssp CHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCCCSSEE
T ss_pred hHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCCCee
Confidence 4789999999999999999999999 999999999999999999999999999999999999988876433579
Q ss_pred eEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEec
Q 013432 150 THYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVS 229 (443)
Q Consensus 150 D~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~ 229 (443)
|+|||||||.+||||||+ +|+|+|++|+||+|||||++||++|| +|+||+||+++++++++++++|++ .||+|++
T Consensus 75 D~~gTGGdg~~tfNiSt~-~a~v~Aa~Gv~V~kHGnr~~ss~~Gs--aDvLeaLG~~~~~~~~~~~~~l~~--~g~~fl~ 149 (329)
T 2elc_A 75 DIVGTGGDGKGLMNLSTL-AALVAAAGGVAVAKHGNRAASSRAGS--ADLLEALGVDLEAPPERVGEAIEE--LGFGFLF 149 (329)
T ss_dssp EEEECCCCSSCCCCCHHH-HHHHHHHTTCEEEEEECCCTTTTCSH--HHHHHHTTCCTTCCHHHHHHHHHH--HSEEEEE
T ss_pred EEcCCCCCCCCccccHHH-HHHHHHhCCCCEEEeCCCCCCCcccH--HHHHHhCCCCCCCCHHHHHHHHHH--CCEEEEE
Confidence 999999999999999998 99999999999999999999999999 999999999999999999999999 6677788
Q ss_pred cchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCCccccc
Q 013432 230 LREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMT 309 (443)
Q Consensus 230 a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG~~e~s 309 (443)
+|.|||+|++++++|++||+||++|.... ++||+++++||+||||+.|.++++++++.+| ++++|||| +|+||++
T Consensus 150 a~~~hPa~k~~~~~R~~lg~rTvfn~lgp---L~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lG-~~alVv~G-~G~dE~~ 224 (329)
T 2elc_A 150 ARVFHPAMRHVAPVRAELGVRTVFNLLGP---LTNPAGADAYVLGVFSPEWLAPMAEALERLG-ARGLVVHG-EGADELV 224 (329)
T ss_dssp HHHHCGGGGGTHHHHHHHCSCCHHHHHTT---TCCTTCCCEEEEECSSGGGHHHHHHHHHHTT-CEEEEEEE-TTBSSCC
T ss_pred hHHhCHHHHHHHHHHHHhCCCCHHHHHHH---hcCccCCceeEEeeeCHHHHHHHHHHHHHcC-CCEEEEeC-CChhhhc
Confidence 99999999999999999999996665333 2566677899999999999999999999999 99999999 9999997
Q ss_pred cccccccccCCCCccccccccccCcceeEec-CCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHHhCCCC-
Q 013432 310 TRLRSVNASKGLPVNYCSGFRSLNVESTFEG-DGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALRGEK- 386 (443)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~~-~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~iL~G~~- 386 (443)
.. +|.|++. +|+ |+++|++||++.++++++ ++++++|+++++++|+|+.
T Consensus 225 -~~---------------------~t~v~~~~~g~------~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~vL~G~~~ 276 (329)
T 2elc_A 225 -LG---------------------ENRVVEVGKGA------YALTPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEK 276 (329)
T ss_dssp -SS---------------------CEEEEETTTEE------EEECGGGGTCCCCCGGGGCCCSHHHHHHHHHHHHTTCCC
T ss_pred -cC---------------------CeEEEEEECCE------EEECHHHcCCccCCcccCCCCCHHHHHHHHHHHHCCCCC
Confidence 54 2556553 442 789999999999888774 7899999999999999986
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Q 013432 387 GPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISH 440 (443)
Q Consensus 387 ~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~ 440 (443)
++.+|.|++|||++||++| ++.++++|+++|+++|+||+|+++|++|+++++
T Consensus 277 ~~~~d~v~~naa~~L~~~g--~~~~~~~g~~~A~~~i~sG~A~~~l~~~~~~~~ 328 (329)
T 2elc_A 277 GPLADAVALAAGAGFYAAG--KTPSLKEGVALAREVLASGEAYLLLERYVAFLR 328 (329)
T ss_dssp SHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 7899999999999999985 789999999999999999999999999999886
No 6
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=100.00 E-value=1.1e-80 Score=629.00 Aligned_cols=331 Identities=18% Similarity=0.221 Sum_probs=303.4
Q ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCC
Q 013432 66 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 145 (443)
Q Consensus 66 ~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~ 145 (443)
|+++++|+++.+|++||++|++++|+.|| +|+++|.|+||||+++|+||||+|||+||++||++++.+++++
T Consensus 1 m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~-------~g~~~~~QiaAfL~alr~kget~eEiag~~~am~~~~~~~~~~- 72 (345)
T 1o17_A 1 MNINEILKKLINKSDLEINEAEELAKAII-------RGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVP- 72 (345)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCT-
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCC-
Confidence 56899999999999999999999999999 9999999999999999999999999999999999999888764
Q ss_pred CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCcee
Q 013432 146 VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGF 225 (443)
Q Consensus 146 ~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf 225 (443)
+.||+|||||||.+||||||+ +|+++|++ +||+|||||++||++|| +|+||+||++++++++++.++|++ .||
T Consensus 73 -~~vD~~gTGGdg~~tfNiSt~-~A~v~Aa~-v~VaKHGnR~~ss~~Gs--aDvLEaLGv~~~~~~e~~~~~l~~--~gi 145 (345)
T 1o17_A 73 -NAIDTAGTGGDGLGTVNVSTA-SAILLSLV-NPVAKHGNRAVSGKSGS--ADVLEALGYNIIVPPERAKELVNK--TNF 145 (345)
T ss_dssp -TCEECCC----CCCBCCHHHH-HHHHHTTT-SCEEEEECCCSSSSCSH--HHHHHHHTBCCCCCHHHHHHHHHH--HSE
T ss_pred -CceeeCCCCCCCCCccchHHH-HHHHHHHc-CCEEEECCCCCCCcccH--HHHHHhCCCCCCCCHHHHHHHHHH--cCE
Confidence 589999999999999999998 99999999 99999999999999999 999999999999999999999999 667
Q ss_pred EEeccchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCCc
Q 013432 226 AYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA 305 (443)
Q Consensus 226 ~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG~ 305 (443)
+|+++|.|||+|++++++|++||+||++|....+ +||+++++||+||||+.|.++++++++.+|.++++||||.+|+
T Consensus 146 ~fl~a~~~hPa~k~l~~~R~~lg~rTvfN~lgpL---~nPa~~~~ql~Gv~~~~~~~~~A~~l~~lG~~~alVv~G~~G~ 222 (345)
T 1o17_A 146 VFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPL---TNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGI 222 (345)
T ss_dssp EEEEHHHHCGGGGGTHHHHHHHCSCCGGGGCGGG---CCTTCCSEEEEECSSHHHHHHHHHHHTTSCCSEEEEEEETTTB
T ss_pred EEEehHHhChHHHHHHHHHHHhCCCCHHHHHHHh---cCccCCCeEEEEeeCHHHHHHHHHHHHHcCCCeEEEEECCCCH
Confidence 7788999999999999999999999988775543 6888889999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCc-CCCHHHHHHHHHHHhC
Q 013432 306 LSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRA-DRSVSKNIELGLAALR 383 (443)
Q Consensus 306 ~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~-~~~~~~na~~~~~iL~ 383 (443)
||+++.+ +|.+++ .+|++.+ |+|+|+|||+++.+++++ ++++++|+++++++|+
T Consensus 223 dE~s~~~---------------------~t~v~~~~~g~~~~---~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~~vL~ 278 (345)
T 1o17_A 223 DEVSPIG---------------------NTFMKIVSKRGIEE---VKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFL 278 (345)
T ss_dssp SSCCSSS---------------------EEEEEEEETTEEEE---EEEEGGGGTCCCCCGGGTBCSSHHHHHHHHHHHHH
T ss_pred HHhcccC---------------------CcEEEEEeCCeEEE---EEEChhhcCCCCCChhccCCCCHHHHHHHHHHHHC
Confidence 9998654 355654 4776654 999999999999998874 7899999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhccC
Q 013432 384 GEKGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHKL 442 (443)
Q Consensus 384 G~~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~~ 442 (443)
|+.++.+|.|++|||++||++| ++.++++|+++|+++|+ +|+++|++|+++++.+
T Consensus 279 G~~~~~~d~v~~naa~~L~~~g--~~~~~~eg~~~A~~~i~--~A~~~l~~~~~~~~~~ 333 (345)
T 1o17_A 279 GKDEHVAEFIKINTAVALFALD--RVGDFREGYEYADHLIE--KSLDKLNEIISMNGDV 333 (345)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHT--THHHHHHHHHHHSBCH
T ss_pred CCCchHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhCCc
Confidence 9877899999999999999985 78999999999999999 9999999999998753
No 7
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=100.00 E-value=3.2e-61 Score=496.91 Aligned_cols=297 Identities=19% Similarity=0.178 Sum_probs=265.1
Q ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCC
Q 013432 65 EMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVA 144 (443)
Q Consensus 65 G~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~ 144 (443)
.|+++++|+++.+|++||++|++++|+.|+ +|+++|.|+||||+++|+||||+|||+||++||++++.+++++
T Consensus 3 ~m~~~~~I~kl~~g~~Lt~eEa~~~~~~i~-------~G~~sd~QiaAfL~Alr~kGet~eEiag~~~Am~~~~~~~~~~ 75 (436)
T 3h5q_A 3 AMRMIDIIEKKRDGHTLTTEEINFFIGGYV-------KGDIPDYQASSLAMAIYFQDMNDDERVALTMAMVNSGDMIDLS 75 (436)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-------HTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSCCCCCT
T ss_pred CCCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCcc
Confidence 367999999999999999999999999999 9999999999999999999999999999999999999888765
Q ss_pred C--CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhc
Q 013432 145 D--VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDE 221 (443)
Q Consensus 145 ~--~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaL-Gi~i~~s~~~~~~~Le~~ 221 (443)
. .+.||+|||||||.+| ||+ +|+|+|+||++|+|||||++||++|| +|+||+| |++++++++++.++|++
T Consensus 76 ~~~~~~vD~~gTGGdG~~t---St~-~A~vvAa~Gv~VaKHGnRa~ss~~Gs--aDvLEaLpGi~~~ls~e~~~~~l~~- 148 (436)
T 3h5q_A 76 DIKGVKVDKHSTGGVGDTT---TLV-LAPLVAAVDVPVAKMSGRGLGHTGGT--IDKLEAIDGFHVEIDEATFVKLVNE- 148 (436)
T ss_dssp TSCSCCEEEEECCCTTCCH---HHH-HHHHHHHTTCCEEEECCCCSSSSCCH--HHHHTTSTTCCCCCCHHHHHHHHHH-
T ss_pred ccCCCceeecCCCCCCCCh---HHH-HHHHHHhCCCCEEeECCCCCCCcccH--HHHHHhCcCCCCCCCHHHHHHHHHH-
Confidence 3 3589999999999987 777 99999999999999999999999999 8999999 99999999999999999
Q ss_pred CceeEEec-cchhcHHhHHHHhhhcccCCCCCCCCchhhhhhhh--------ccCCCeEEEeec--------CCCchHHH
Q 013432 222 EIGFAYVS-LREARPSLYSLIGLREHIKKRPPVATSEKVQQFVR--------AQGREAIVAGFY--------HEGYEEPL 284 (443)
Q Consensus 222 g~gf~fl~-a~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~ln--------p~~~~~~v~GV~--------h~~~~~~~ 284 (443)
.||+|++ +|.|||+|++++++|++ +||-.+-| ++| |++++++|+||| +++..+.+
T Consensus 149 -~g~~fl~~a~~~~Pa~~~l~~lR~~--~~TvfniP-----LinaSimSKKlpag~~~~vlgV~~G~gaf~~~~~~a~~l 220 (436)
T 3h5q_A 149 -NKVAVVGQSGNLTPADKKLYALRDV--TGTVNSIP-----LIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEAL 220 (436)
T ss_dssp -HSEEEECCCSSSCHHHHHHHHHHHT--TTCSSCHH-----HHHHHHHHHHHHTTCSEEEEEEEESTTSSBCSHHHHHHH
T ss_pred -cCCEEEccccccCHHHHHHHHHHhc--cCCcCChh-----hhccchhccccccCCCeEEEeeecCccccCCCHHHHHHH
Confidence 6678887 79999999999999999 67855443 478 889999999999 99999999
Q ss_pred HHHHHHcCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCC
Q 013432 285 LMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTN 363 (443)
Q Consensus 285 a~~l~~lG~~~alVv~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~ 363 (443)
+++|..+|.++ | . |++++ .||. +| ||+.
T Consensus 221 A~~l~~lG~~~-----G---~-----------------------------~~v~~lt~~~---------~P--lG~~--- 249 (436)
T 3h5q_A 221 AHAMVRIGNNV-----G---R-----------------------------NTMAIISDMN---------QP--LGRA--- 249 (436)
T ss_dssp HHHHHHHHHHH-----T---C-----------------------------CEEEEEEECS---------SC--SSSE---
T ss_pred HHHHHHhhhhc-----C---C-----------------------------eEEEEEcCCC---------CC--CCCC---
Confidence 99999998643 1 1 22222 2331 35 7764
Q ss_pred CCCcCCCHHHHHHHHHHHhCCC-CCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 364 TPRADRSVSKNIELGLAALRGE-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 364 ~~~~~~~~~~na~~~~~iL~G~-~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
++++.+|++ ++++|+|+ +++.+|.|++|||.+||++| +++++++|+++|+++|+||+|+++|++|+++|+.
T Consensus 250 ----~G~~~E~ae-~~~vL~G~~~~~~~d~vl~nAa~~L~~ag--~a~~~~eg~~~A~~~i~sG~A~~~l~~~v~~qGg 321 (436)
T 3h5q_A 250 ----IGNALELQE-AIDTLKGQGPKDLTELVLTLGSQMVVLAN--KAETLEEARALLIEAINSGAALEKFKTFIKNQGG 321 (436)
T ss_dssp ----EESHHHHHH-HHHHHTTCSCHHHHHHHHHHHHHHHHHTT--SCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTC
T ss_pred ----CCCHHHHHH-HHHHHCCCCCccHHHHHHHHHHHHHHhcC--CcCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCC
Confidence 579999999 99999998 56799999999999999985 7899999999999999999999999999999874
No 8
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=100.00 E-value=4e-60 Score=489.72 Aligned_cols=293 Identities=17% Similarity=0.178 Sum_probs=253.9
Q ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCC
Q 013432 66 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 145 (443)
Q Consensus 66 ~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~ 145 (443)
|+++++|+++.+|++||++|++++|+.|+ +|+++|.|+||||+++|+||||+|||+||++||++++.++++++
T Consensus 1 m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~-------~G~~sd~QiaAfL~Alr~kGet~eEiag~a~AM~~~~~~v~~~~ 73 (433)
T 1brw_A 1 MRMVDLIAKKRDGKALTKEEIEWIVRGYT-------NGDIPDYQMSALAMAIYFRGMTEEETAALTMAMVQSGEMLDLSS 73 (433)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCCCCTT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCccc
Confidence 56889999999999999999999999999 99999999999999999999999999999999999998887754
Q ss_pred --CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhcC
Q 013432 146 --VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 222 (443)
Q Consensus 146 --~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaL-Gi~i~~s~~~~~~~Le~~g 222 (443)
.+.+|+|||||||.+ +||+ +|+++|+||+||+|||||++||++|| +|+||+| |++++++++++.++|++
T Consensus 74 ~~~~~vD~~gTGGdG~~---iSt~-~A~vvAa~Gv~VaKHGnRa~ss~~Gs--aDvLEaL~Gv~i~ls~e~~~~~l~~-- 145 (433)
T 1brw_A 74 IRGVKVDKHSTGGVGDT---TTLV-LGPLVASVGVPVAKMSGRGLGHTGGT--IDKLESVPGFHVEISKDEFIRLVNE-- 145 (433)
T ss_dssp SCSCCEEEEECCCSSCC---HHHH-HHHHHHTTTCCEEEEECCCBTTBCCH--HHHHTTSTTCCCCCCHHHHHHHHHH--
T ss_pred ccCCceeeCCCCCCCcc---hHHH-HHHHHHhCCCcEEEECCCCCCCCCCH--HHHHHHCcCceecCCHHHHHHHHHH--
Confidence 258999999999996 7887 99999999999999999999999998 8999999 99999999999999999
Q ss_pred ceeEEecc-chhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhc--------cCCCeEEEee------c------CCCch
Q 013432 223 IGFAYVSL-REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--------QGREAIVAGF------Y------HEGYE 281 (443)
Q Consensus 223 ~gf~fl~a-~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp--------~~~~~~v~GV------~------h~~~~ 281 (443)
.||+|+++ |.|||+|++++++|++| ||..+.| ++|| .+.+++|+|| | ++.+.
T Consensus 146 ~Gi~fl~a~~~~hPA~k~l~~lR~~l--rTvfNiP-----Lin~s~lskklA~G~~~~VlgVk~G~gaf~~~~de~~~l~ 218 (433)
T 1brw_A 146 NGIAIIGQTGDLTPADKKLYALRDVT--ATVNSIP-----LIASSIMSKKIAAGADAIVLDVKTGAGAFMKKLDEARRLA 218 (433)
T ss_dssp HSEEEEECCTTSCHHHHHHHHHHHHH--TCCCCHH-----HHHHHHHHHHHHHCCSEEEEEEEESTTSSCCSHHHHHHHH
T ss_pred cCeeEecCchhhCHHHHHHHHHHHhh--CCccChh-----hcCcHhhHHHHhcCCCEEEEEeecccccccCCHHHHHHHH
Confidence 66777888 59999999999999999 7866653 3566 4666777777 6 56666
Q ss_pred HHHHHHHHHcCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEecCCcEEeeeeEEEecCCCCCCC
Q 013432 282 EPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEP 361 (443)
Q Consensus 282 ~~~a~~l~~lG~~~alVv~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~~~g~~~~~~~~~i~P~d~Gl~~ 361 (443)
+.+.++++.+|.++.+++++. +
T Consensus 219 ~~~v~~~~~~G~~~~~~i~~~---~------------------------------------------------------- 240 (433)
T 1brw_A 219 RVMVDIGKRVGRRTMAVISDM---S------------------------------------------------------- 240 (433)
T ss_dssp HHHHHHHHHTTCEEEEEEEEC---S-------------------------------------------------------
T ss_pred HHHHHHHHHcCCEEEEEEcCC---C-------------------------------------------------------
Confidence 666666666676666666641 0
Q ss_pred CCCCCcCCCHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Q 013432 362 TNTPRADRSVSKNIELGLAALRGEK-GPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISH 440 (443)
Q Consensus 362 ~~~~~~~~~~~~na~~~~~iL~G~~-~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~ 440 (443)
.++...++++.+|++. +++|+|+. .+.+|.|++|||++||++| ++.++++|+++|+++|+||+|+++|++|+++|+
T Consensus 241 ~plg~~~G~a~E~a~~-~~vL~G~g~~~~~d~vl~nAa~~L~~~g--~a~~~~eg~~~A~~~i~sG~A~~kl~~~i~~~~ 317 (433)
T 1brw_A 241 QPLGYAVGNALEVKEA-IETLKGNGPHDLTELCLTLGSHMVYLAE--KAPSLDEARRLLEEAIRSGAAIAAFKTFLAAQG 317 (433)
T ss_dssp SCSSSEESSHHHHHHH-HHHHTTCSCHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred CcccccCCCHHHHHHH-HHHHCCCCChhHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhC
Confidence 1111124789999965 99999973 2479999999999999985 799999999999999999999999999999987
Q ss_pred c
Q 013432 441 K 441 (443)
Q Consensus 441 ~ 441 (443)
.
T Consensus 318 g 318 (433)
T 1brw_A 318 G 318 (433)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=100.00 E-value=7.8e-60 Score=490.98 Aligned_cols=292 Identities=17% Similarity=0.173 Sum_probs=257.6
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCC
Q 013432 67 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADV 146 (443)
Q Consensus 67 ~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~ 146 (443)
+++++|+++.+|++||++|++++|+.|+ +|+++|.|+||||+|+|+||||.|||+||++||++++.+++++..
T Consensus 29 ~~~~iI~k~~~g~~Lt~eEa~~~~~~i~-------~G~~sd~QiaAfLmAlr~kGeT~eEiag~a~AMr~~~~~v~~~~~ 101 (474)
T 1uou_A 29 QLPELIRMKRDGGRLSEADIRGFVAAVV-------NGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEA 101 (474)
T ss_dssp CHHHHHHHHHTTCCCCHHHHHHHHHHHH-------HTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSCCCCCCGG
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCcccc
Confidence 4889999999999999999999999999 999999999999999999999999999999999999988877542
Q ss_pred ---CCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhcC
Q 013432 147 ---KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEE 222 (443)
Q Consensus 147 ---~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaL-Gi~i~~s~~~~~~~Le~~g 222 (443)
+.||+|||||||.+ +||+ +|+|+|+||++|+|||||++||++|| +|+||+| |++++++++++.++|++
T Consensus 102 ~~~~~vD~~gTGGdG~~---iSt~-~A~vvAa~Gv~VaKHGnRa~ss~~GS--aDvLEaLpGv~i~ls~e~~~~~l~~-- 173 (474)
T 1uou_A 102 WRQQLVDKHSTGGVGDK---VSLV-LAPALAACGCKVPMISGRGLGHTGGT--LDKLESIPGFNVIQSPEQMQVLLDQ-- 173 (474)
T ss_dssp GGGGBEEEEESCCTTCC---HHHH-HHHHHHTTTCBEEEECCCCBTTBCCH--HHHHTTSTTCCCCCCHHHHHHHHHH--
T ss_pred cCCCeeEeCCCCCCCce---eHHH-HHHHHHhCCCCEEEECCCCCCCCCCH--HHHHHhCCCCCCCCCHHHHHHHHHH--
Confidence 58999999999998 7887 99999999999999999999999999 8999999 99999999999999999
Q ss_pred ceeEEecc-chhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhc--------cCCCeEEEee------c------CCCch
Q 013432 223 IGFAYVSL-REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRA--------QGREAIVAGF------Y------HEGYE 281 (443)
Q Consensus 223 ~gf~fl~a-~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp--------~~~~~~v~GV------~------h~~~~ 281 (443)
.||+|+++ |.|||+|++++++|+++ ||..+.| ++|| .+..++|+|| | ++.+.
T Consensus 174 ~Gi~fl~a~~~~hPA~k~l~~lR~~l--rTvfNiP-----Linpsi~skklA~g~~~~VlgVk~G~gafm~~lde~~~la 246 (474)
T 1uou_A 174 AGCCIVGQSEQLVPADGILYAARDVT--ATVDSLP-----LITASILSKKLVEGLSALVVDVKFGGAAVFPNQEQARELA 246 (474)
T ss_dssp HSEEEECCCSSSSHHHHHHHHHHHHT--TCSSCHH-----HHHHHHHHHHHHTTCSEEEEEEEEC--CCCCSHHHHHHHH
T ss_pred cCeEEecCchhhCHHHHHHHHHHhhh--CCccchh-----hcCcHHHHHHHhhcCCeEEEEeccccccccCCHHHHHHHH
Confidence 66777889 69999999999999995 8866653 3566 5677888888 6 66777
Q ss_pred HHHHHHHHHcCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEecCCcEEeeeeEEEecCCCCCCC
Q 013432 282 EPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGVSRQSFNLEVNASNYGFEP 361 (443)
Q Consensus 282 ~~~a~~l~~lG~~~alVv~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~~~g~~~~~~~~~i~P~d~Gl~~ 361 (443)
+.+.++++.+|.++.++|++.+ . | +|+
T Consensus 247 ~~~v~~~~~~G~~~~~vitd~~---~----------------------------------------------p--lg~-- 273 (474)
T 1uou_A 247 KTLVGVGASLGLRVAAALTAMD---K----------------------------------------------P--LGR-- 273 (474)
T ss_dssp HHHHHHHHHTTCCEEEEEEECS---S----------------------------------------------C--STT--
T ss_pred HHHHHHHHHCCCEEEEEEecCC---C----------------------------------------------c--ccc--
Confidence 7777888778888888887521 0 0 111
Q ss_pred CCCCCcCCCHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Q 013432 362 TNTPRADRSVSKNIELGLAALRGEK-GPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISH 440 (443)
Q Consensus 362 ~~~~~~~~~~~~na~~~~~iL~G~~-~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~ 440 (443)
.++++.+|++.+ ++|+|+. .+.+|.|++|||++||++| ++.++++|+++|+++|+||+|+++|++|+++++
T Consensus 274 -----~~G~a~E~ae~~-~vL~G~g~~~~~d~vl~nAa~~L~~aG--~a~~~~eg~~~A~e~i~sG~A~~kl~~li~~~~ 345 (474)
T 1uou_A 274 -----CVGHALEVEEAL-LCMDGAGPPDLRDLVTTLGGALLWLSG--HAGTQAQGAARVAAALDDGSALGRFERMLAAQG 345 (474)
T ss_dssp -----EESSHHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHHHHHT--SCSSHHHHHHHHHHHHHSSHHHHHHHHHHHHTT
T ss_pred -----cCCCHHHHHHHH-HHHCCCCchhHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhC
Confidence 247899999754 9999983 4679999999999999986 789999999999999999999999999999887
Q ss_pred c
Q 013432 441 K 441 (443)
Q Consensus 441 ~ 441 (443)
.
T Consensus 346 g 346 (474)
T 1uou_A 346 V 346 (474)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=100.00 E-value=3.2e-60 Score=491.34 Aligned_cols=304 Identities=15% Similarity=0.107 Sum_probs=252.2
Q ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCC
Q 013432 66 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 145 (443)
Q Consensus 66 ~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~ 145 (443)
|+++++|+++.+|++||++|++++|+.|+ +|+++|.|+||||+++|+||||.|||+||++||++++.++++++
T Consensus 2 m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~-------~G~~sd~QiaAfL~Alr~kGet~eEiag~~~Am~~~~~~~~~~~ 74 (440)
T 2tpt_A 2 FLAQEIIRKKRDGHALSDEEIRFFINGIR-------DNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKS 74 (440)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------HTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSBCCCCTT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcc
Confidence 56899999999999999999999999999 99999999999999999999999999999999999998887754
Q ss_pred --C--CCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHh
Q 013432 146 --V--KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLED 220 (443)
Q Consensus 146 --~--~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaL-Gi~i~~s~~~~~~~Le~ 220 (443)
. +.||+|||||||.+ +||+ +|+++|+||++|+|||||++||++|| +|+||+| |++++++++++.++|++
T Consensus 75 ~~~~~~~vD~~gTGGdG~~---iSt~-~A~vvAa~Gv~VaKHGnR~~ss~~Gs--aDvLEaL~Gv~~~ls~e~~~~~l~~ 148 (440)
T 2tpt_A 75 LHLNGPIVDKHSTGGVGDV---TSLM-LGPMVAACGGYIPMISGRGLGHTGGT--LDKLESIPGFDIFPDDNRFREIIKD 148 (440)
T ss_dssp TTCSSCBEEEEECCCSSCC---HHHH-HHHHHHHTTCBEEEEECCCCTTSCCH--HHHHTTSTTCCSCCCHHHHHHHHHH
T ss_pred cccCCCeeeeCCCCCCCcc---HHHH-HHHHHHhCCCcEEEECCCCCCCcccH--HHHHHhCcCCCCCCCHHHHHHHHHH
Confidence 2 58999999999988 7887 99999999999999999999999999 9999999 99999999999999999
Q ss_pred cCceeEEecc-chhcHHhHHHHhhhcccCCCCCCCCchhhhhhhhccCCCeEEEeecCCCchHHHHHHHHHcCCceEEEE
Q 013432 221 EEIGFAYVSL-REARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVV 299 (443)
Q Consensus 221 ~g~gf~fl~a-~~~~Pa~~~l~~vR~~Lg~RtPL~np~~~~~~lnp~~~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv 299 (443)
.||+|+++ |.|||+|++++++|++| ||..+.| ++|| +.+.+++|. |.+ ++|+
T Consensus 149 --~G~~fl~a~~~~hPA~k~l~~lR~~l--rTvfNiP-----Lin~------------s~lskk~A~-----G~~-alVv 201 (440)
T 2tpt_A 149 --VGVAIIGQTSSLAPADKRFYATRDIT--ATVDSIP-----LITA------------SILAKKLAE-----GLD-ALVM 201 (440)
T ss_dssp --TSEEEEECCTTBSHHHHHHHHHHHHT--TCCCCHH-----HHHH------------HHHHHHHTT-----CCS-EEEE
T ss_pred --cCEEEEcCchhhCHHHHHHHHHHHhh--CCccChh-----hcCC------------HHHHHHHhc-----CCC-eEEE
Confidence 66777888 79999999999999999 8977764 3554 234444443 776 7776
Q ss_pred ---ecC----CCccccccccccccccCCCCccccccccccCcceeEe--cCCcEEeeeeEEEecCCCCCCCCCCCCcCCC
Q 013432 300 ---KGE----EGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE--GDGVSRQSFNLEVNASNYGFEPTNTPRADRS 370 (443)
Q Consensus 300 ---~G~----eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~--~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~~ 370 (443)
||. +|++|++...+ +.+++ .-|... ...++. |. .++...+++
T Consensus 202 dVk~G~gaf~~~~de~~~la~---------------------t~v~~~~~~G~~~---~a~itd---~~--~plg~~~G~ 252 (440)
T 2tpt_A 202 DVKVGSGAFMPTYELSEALAE---------------------AIVGVANGAGVRT---TALLTD---MN--QVLASSAGN 252 (440)
T ss_dssp EEEESTTSSSSSHHHHHHHHH---------------------HHHHHHHHTTCEE---EEEEEE---CS--SCSSSCEES
T ss_pred EeccCCccccCCHHHHHHHHH---------------------HHHHHHHHcCCce---EEEecC---CC--CchhhcCCC
Confidence 885 45666654322 11111 011110 012211 11 444444679
Q ss_pred HHHHHHHHHHHhCCCCC--ChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 371 VSKNIELGLAALRGEKG--PTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 371 ~~~na~~~~~iL~G~~~--~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
+.+|++. +++|+|+.. +.+|.|++|||.+||++| ++.++++|+++|+++|+||+|+++|++|+++++.
T Consensus 253 a~E~ae~-~~vL~G~g~~~~~~d~vl~nAa~~L~~ag--~a~~~~eg~~~A~~~i~sG~A~~kl~~~v~~~~g 322 (440)
T 2tpt_A 253 AVEVREA-VQFLTGEYRNPRLFDVTMALCVEMLISGK--LAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKG 322 (440)
T ss_dssp HHHHHHH-HHHHHTSCCCHHHHHHHHHHHHHHHHHTT--SCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HHHHCCCCCchHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCC
Confidence 9999987 999999732 379999999999999985 7899999999999999999999999999999874
No 11
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=6.5e-59 Score=478.06 Aligned_cols=294 Identities=18% Similarity=0.156 Sum_probs=250.1
Q ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCC
Q 013432 66 MRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVAD 145 (443)
Q Consensus 66 ~~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~ 145 (443)
|+++++|+++.+|++||++|++++|+.|+ +|+++|.|+||||+|+|+||||++||+||++||++++.+++++.
T Consensus 1 m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~-------~G~~~d~QiaAfL~Al~~kGet~eEiag~a~aM~~~~~~l~~~~ 73 (423)
T 2dsj_A 1 MNPVAFIREKREGKKHRREDLEAFLLGYL-------RDEVPDYQVSAWLMAAFLRGLDPEETLWLTETMARSGKVLDLSG 73 (423)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSBCCCCTT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCccc
Confidence 56889999999999999999999999999 99999999999999999999999999999999999998887653
Q ss_pred C-CCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhC-CCCCCCCHHHHHHHHHhcCc
Q 013432 146 V-KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFM-GASTNLSVLQAKELLEDEEI 223 (443)
Q Consensus 146 ~-~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaL-Gi~i~~s~~~~~~~Le~~g~ 223 (443)
. ..+|+|||||||. |+||+ +|+|+|+||+||+|||||++||++|| +|+||+| |++++++++++.++|++ .
T Consensus 74 ~~~~vD~~gTGGdG~---niSt~-~a~vvAa~Gv~VaKhGnR~~ss~~Gs--aDvLEaL~Gv~i~l~~e~~~~~l~~--~ 145 (423)
T 2dsj_A 74 LPHPVDKHSSGGVGD---KVSLV-VGPILAASGCTFAKMSGRGLAHTGGT--IDKLESVPGWRGEMTEAEFLERARR--V 145 (423)
T ss_dssp SSSBEEEEEESSSCC---STHHH-HHHHHHTTTCBEEEECCCCBTTBCCH--HHHHTTSTTCCCCCCHHHHHHHHHH--T
T ss_pred cCCceeEecCCCCCc---cHHHH-HHHHHHhCCCcEEEECCCCCCCCccH--HHHHHhCCCCCCCCCHHHHHHHHHH--c
Confidence 2 2799999999998 68998 99999999999999999999999999 9999999 99999999999999999 5
Q ss_pred eeEEecc-chhcHHhHHHHhhhcccC-CCCCCCCchhhhhhhh---ccCCCeEEE------eec--CCCchHHHHHHHHH
Q 013432 224 GFAYVSL-REARPSLYSLIGLREHIK-KRPPVATSEKVQQFVR---AQGREAIVA------GFY--HEGYEEPLLMLMKR 290 (443)
Q Consensus 224 gf~fl~a-~~~~Pa~~~l~~vR~~Lg-~RtPL~np~~~~~~ln---p~~~~~~v~------GV~--h~~~~~~~a~~l~~ 290 (443)
||+|+++ |.|||+|++++++|++|| +||-.+-... .+| |+++++||+ |+| ++++.+.+++++..
T Consensus 146 Gi~f~~~~~~~~PA~k~l~~lR~~lgtv~Ti~nilgp---l~nkK~pag~~~~vldV~~G~Gaf~~~~~~~~~lA~~l~~ 222 (423)
T 2dsj_A 146 GLVIAAQSPDLAPLDGKLYALRDVTATVESVPLIASS---IMSKKLAAGARSIVLDVKVGRGAFMKTLEEARLLAKTMVA 222 (423)
T ss_dssp SEEEESCGGGBSHHHHHHHHHHHTTTCCCCHHHHHHH---HHHHHHHHTCSEEEEEEEESSSTTCBCHHHHHHHHHHHHH
T ss_pred CEEEEecccccChHHHHHHHHHHHhcccCcHHHhHHH---HhcCccCCCCCeEEEEeccCCCcccCCHHHHHHHHHHHHH
Confidence 5666656 799999999999999999 7982221111 245 778899999 779 88899999999999
Q ss_pred cCCceEEEEecCCCccccccccccccccCCCCccccccccccCcceeEe-cCCcEEeeeeEEEecCCCCCCCCCCCCcCC
Q 013432 291 RGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFE-GDGVSRQSFNLEVNASNYGFEPTNTPRADR 369 (443)
Q Consensus 291 lG~~~alVv~G~eG~~e~s~~~~~~~~~~~~~~~~~~~~r~~~~t~v~~-~~g~~~~~~~~~i~P~d~Gl~~~~~~~~~~ 369 (443)
+|.++ | . +.+++ .||. +.+|+ .++
T Consensus 223 lg~~~-----G---~-----------------------------~~v~~l~dg~-----------~plg~-------~~G 247 (423)
T 2dsj_A 223 IGQGA-----G---R-----------------------------RVRALLTSME-----------APLGR-------AVG 247 (423)
T ss_dssp HHHHT-----T---C-----------------------------EEEEEEEECS-----------SCSSS-------EEE
T ss_pred HHHHc-----C---C-----------------------------eEEEEEcCCC-----------Ccccc-------cCC
Confidence 88532 1 0 11111 1321 12333 357
Q ss_pred CHHHHHHHHHHHhCCC-CCChHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Q 013432 370 SVSKNIELGLAALRGE-KGPTYDRIVLNAGMVDHLLGCDGAEDVSVAMDRAREAIDSGKALKRLLNYIKISHK 441 (443)
Q Consensus 370 ~~~~na~~~~~iL~G~-~~~~~d~v~lNAa~aL~~~g~g~~~~~~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 441 (443)
++.+|++++. +|+|+ +.+.+|.|++|||.+||++| + ++ ++|+++|+||+|+++|++|+++++.
T Consensus 248 ~a~E~ae~i~-vL~G~g~~~~~d~vl~nAa~~L~~ag--~--~l----~~A~~~l~sG~A~~kl~~li~~~~g 311 (423)
T 2dsj_A 248 NAIEVREAIE-ALKGEGPGDLLEVALALAEEALRLEG--L--DP----ALARKALEGGAALEKFRAFLEAQGG 311 (423)
T ss_dssp SHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHHHHTT--C--CT----HHHHHHHHTSHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHH-HHCCCCchhHHHHHHHHHHHHHHHcC--C--CH----HHHHHHHhcCcHHHHHHHHHHHhCC
Confidence 9999999885 99997 33479999999999999986 4 55 8999999999999999999999874
No 12
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=98.42 E-value=6.9e-08 Score=88.87 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=43.9
Q ss_pred HHhhcccccccCCCceEEeecCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHHh
Q 013432 22 MNTFWPLLMRALPPDVIFIADPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVL 76 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl~ 76 (443)
..+||+..+.++|+.++++|+.|+.|||++|+ ||+|||||+ +.|.. +++|++.+.
T Consensus 128 v~~~H~~~v~~lp~~~~v~a~~~~~~~ai~~~~~~~~gvQfHPE~~~~~~g~~il~nf~~~~~ 190 (192)
T 1i1q_B 128 VARYHSLVGSNVPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQ 190 (192)
T ss_dssp EEECCC---CCCCTTCEEEEEETTEEEEEEETTTTEEEESSBTTSTTCTTHHHHHHHHHHHHT
T ss_pred EEechhhHhhhCCCccEEEECCCCcEEEEEECCCCEEEEEccCcccCCcccHHHHHHHHHHHh
Confidence 56789999889999999999556899999975 999999997 56777 889987654
No 13
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=98.38 E-value=9.5e-08 Score=88.21 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=45.6
Q ss_pred HHhhcccccccCCCceEEee-c-CCCceeeeccC----CCCCCCCCC---ccccc-HHHHHH
Q 013432 22 MNTFWPLLMRALPPDVIFIA-D-PEGSIMGGGGS----IGPHYSGND---PREMR-LVGALR 73 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~-~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~ 73 (443)
..+||+..+.++|+.++++| + ++|.|+|++|+ +|+|||||. +.|.. +++|++
T Consensus 132 v~~~H~~~v~~l~~~~~vla~s~~~g~i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~~ 193 (195)
T 1qdl_B 132 ATRYHSLVVDEVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLN 193 (195)
T ss_dssp EEEEEEEEEECCCTTEEEEEEESSSCCEEEEEESSSSEEEESSBTTSTTCTTHHHHHHHHHH
T ss_pred EeccccchhhhCCCCcEEEEEECCCCcEEEEEeCCCCEEEEecCCCCCCCccHHHHHHHHHh
Confidence 56799999989999999999 8 89999999996 899999997 45766 888886
No 14
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=98.26 E-value=2.7e-07 Score=100.11 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=46.0
Q ss_pred hcccccccCCCceEEee-cCCCceeeeccC--CCCCCCCCC---ccccc-HHHHHHHHhcCC
Q 013432 25 FWPLLMRALPPDVIFIA-DPEGSIMGGGGS--IGPHYSGND---PREMR-LVGALREVLAGG 79 (443)
Q Consensus 25 yhsl~~~~lp~~~~~~a-~~~~~im~~~h~--~g~qfhpes---~~G~~-l~~~L~kl~~g~ 79 (443)
||+..+..+|+.++++| ++||.|||++|+ ||||||||+ +.|.. ++|||+.+...+
T Consensus 576 ~h~~~~~~lp~g~~v~A~s~dg~i~Ai~~~~~~GVQFHPE~~~t~~G~~Ll~nFl~~~~~~~ 637 (645)
T 3r75_A 576 VRDEMDVDGVGTVAISRDPRTGEVHALRGPTFSSMQFHAESVLTVDGPRILGEAITHAIRRE 637 (645)
T ss_dssp SCSEEEETTTEEEEEEECTTTCBEEEEEETTEEEESSBTTSTTCTTHHHHHHHHHHHHTTTT
T ss_pred ehhhccccCCCCeEEEEEcCCCcEEEEEcCCEEEEEeCCeecCCcchHHHHHHHHHHHHhcc
Confidence 34444446999999999 899999999999 999999998 67887 999999886543
No 15
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.16 E-value=8.2e-07 Score=93.74 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=51.1
Q ss_pred hhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHHhcCCCCCHH
Q 013432 24 TFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLAGGHLGYE 84 (443)
Q Consensus 24 ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl~~g~~Lt~e 84 (443)
.||+..+..+|+.++++| ++++.|+|++|+ ||+|||||. +.|.. +++|++.....++.+.+
T Consensus 124 ~~H~~~v~~lp~g~~v~A~s~~~~i~ai~~~~~~~~gvQFHPE~~~~~~g~~ll~~F~~~~~~~~~~~~~ 193 (503)
T 2ywb_A 124 MSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAGVKRDWTPE 193 (503)
T ss_dssp EECSCEEEECCTTCEEEEECSSCSCSEEECTTSSEEEESBCTTSTTSTTHHHHHHHHHHHTTCCCCCCHH
T ss_pred EECCCccccCCCCCEEEEEECCCCEEEEEeCCCCEEEEecCCCcccccccHHHHHHHHHHhhhhccccch
Confidence 589999989999999999 899999999995 999999997 56777 99999555545566643
No 16
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=98.13 E-value=5.4e-07 Score=82.19 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=44.3
Q ss_pred HhhcccccccC-CCceEEee-cCCCceeeeccC--CCCCCCCCC-ccccc-HHHHHHHH
Q 013432 23 NTFWPLLMRAL-PPDVIFIA-DPEGSIMGGGGS--IGPHYSGND-PREMR-LVGALREV 75 (443)
Q Consensus 23 ~ryhsl~~~~l-p~~~~~~a-~~~~~im~~~h~--~g~qfhpes-~~G~~-l~~~L~kl 75 (443)
.+||+..++++ |+.++++| + |+.+||++|+ +|+|||||- ..|.. +++|++..
T Consensus 126 ~~~H~~~v~~l~~~~~~v~a~s-d~~~~a~~~~~~~gvQfHPE~~~~g~~l~~~F~~~~ 183 (186)
T 2ywj_A 126 VFIRAPVVDKILSDDVEVIARD-GDKIVGVKQGKYMALSFHPELSEDGYKVYKYFVENC 183 (186)
T ss_dssp EESSCCEEEEECCTTCEEEEEE-TTEEEEEEETTEEEESSCGGGSTTHHHHHHHHHHHH
T ss_pred EEEecceeeecCCCCeEEEEEE-CCEEEEEeeCCEEEEECCCCcCCchhHHHHHHHHHH
Confidence 46899888888 99999999 7 7999999998 999999996 44666 88888764
No 17
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=98.13 E-value=6.8e-07 Score=84.22 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=44.8
Q ss_pred HHhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHH-HHHh
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGAL-REVL 76 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L-~kl~ 76 (443)
..+||+..+.++|+.++++| + |+.|+|++|+ +|+|||||. +.|.. +++|+ +...
T Consensus 148 v~~~H~~~v~~l~~~~~vlA~s-~~~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~~~ 211 (218)
T 2vpi_A 148 VLLTHGDSVDKVADGFKVVARS-GNIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAG 211 (218)
T ss_dssp EEECSEEEESSCCTTCEEEEEE-TTEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTC
T ss_pred EeehhhhHhhhcCCCCEEEEEc-CCeEEEEEECCCCEEEEEcCCCCCCChhHHHHHHHHHHHHhC
Confidence 45799999989999999999 7 6799999975 999999997 45766 88888 4443
No 18
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.10 E-value=1.3e-06 Score=92.59 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=52.0
Q ss_pred HhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHHhc-CCCCCHHH
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLA-GGHLGYEE 85 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl~~-g~~Lt~eE 85 (443)
..||+..+..+|+.|+++| ++++.|+|++|+ ||+|||||. +.|.. +++|+..+.. ..+.|.++
T Consensus 140 ~~~H~~~V~~lp~g~~v~A~s~~~~i~ai~~~~~~i~gvQFHPE~~~~~~g~~ll~nF~~~i~~~~~~~~~~~ 212 (525)
T 1gpm_A 140 WMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAK 212 (525)
T ss_dssp EEEECSEEEECCTTCEEEEECSSCSCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHHHHTTSCCCCCCCHHH
T ss_pred EEEccceeeeCCCCCEEEEECCCCCEEEEEECCCCEEEEecCCCCCcchhHHHHHHHHHHhhhhccccchHHH
Confidence 3589998989999999999 899999999984 999999997 56777 9999977654 34666553
No 19
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=98.07 E-value=1.2e-06 Score=82.10 Aligned_cols=53 Identities=9% Similarity=-0.028 Sum_probs=44.4
Q ss_pred HhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHH
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREV 75 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl 75 (443)
..+|+..+.++|+.++++| ++||.|+|++|+ +|+|||||. +.|.. +++|++..
T Consensus 138 ~~~H~~~v~~l~~~~~vlA~s~d~~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~ 199 (212)
T 2a9v_A 138 WENHNDEIINLPDDFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGIC 199 (212)
T ss_dssp EEEEEEEEESCCTTEEEEEECSSCSCSEEEESSSSEEEESSCTTSTTSTTHHHHHHHHHHHH
T ss_pred EeEhhhhHhhCCCCcEEEEEeCCCCEEEEEECCCCEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 4567777778999999999 889999999985 999999997 44666 88888754
No 20
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=98.07 E-value=1.2e-06 Score=80.19 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=41.1
Q ss_pred hccc--ccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHH
Q 013432 25 FWPL--LMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREV 75 (443)
Q Consensus 25 yhsl--~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl 75 (443)
||+. .+.++|+.++++| ++||.|+|++|+ +|+|||||+ +.|.. +++|++..
T Consensus 125 ~~~h~~~v~~l~~~~~vla~s~~g~i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~~~~ 186 (189)
T 1wl8_A 125 WESHMDEVKELPPKFKILARSETCPIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFAKLC 186 (189)
T ss_dssp EECCSEEEEECCTTEEEEEEESSCSCSEEEESSSCEEEESSCTTSTTSTTHHHHHHHHHHHH
T ss_pred EEEeeeehhhCCCCcEEEEEcCCCCEEEEEeCCceEEEEecCCCcCCCcchHHHHHHHHHHH
Confidence 5554 3457999999999 889999999986 899999996 45665 88888653
No 21
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.04 E-value=1.2e-06 Score=93.03 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=50.3
Q ss_pred HhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHHhcCC-CCC
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLAGG-HLG 82 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl~~g~-~Lt 82 (443)
..+|+..+..+|+.++++| ++++.|+|++|+ ||+|||||. +.|.. +++|+..+..-+ +-+
T Consensus 143 ~~~H~d~v~~lp~g~~v~A~s~~~~i~ai~~~~~~~~GvQFHPE~~~t~~G~~ll~nF~~~i~~~~~~w~ 212 (527)
T 3tqi_A 143 WMSHGDIVSELPPGFEATACTDNSPLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWT 212 (527)
T ss_dssp EEESSSCBCSCCTTCEEEEEETTEEEEEEECSSSCEEEESBCSSSTTSTTHHHHHHHHHHTTSCCCCCCC
T ss_pred EEEcccchhccCCCCEEEEEeCCCcEEEEEcCCCCEEEEEeccccccccccchhhhhhhhhcccccchhh
Confidence 4579998889999999999 899999999985 999999997 67877 999997765433 444
No 22
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=97.98 E-value=2e-06 Score=91.79 Aligned_cols=63 Identities=6% Similarity=-0.040 Sum_probs=51.4
Q ss_pred HHhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHHHhc-CCCCCHH
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALREVLA-GGHLGYE 84 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~kl~~-g~~Lt~e 84 (443)
..+||+..+..+|+.++++| +++|.|||++|+ ||+|||||. +.|.. ++||+..+.. ..+.+.+
T Consensus 167 v~~~H~d~V~~lp~g~~vlA~s~~~~i~ai~~~~~~i~GvQFHPE~~~~~~G~~ll~nFl~~i~g~~~~~~~~ 239 (556)
T 3uow_A 167 VWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQFDPI 239 (556)
T ss_dssp EEEEEEEEEEECCTTCEEEEEETTEEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTCCCC-CCHH
T ss_pred EEEEccceeeccCCCcEEEEEeCCCCEEEEEECCCCEEEEEcCCCCCccccchHHHHHHHHHhhccccccccc
Confidence 45789988889999999999 899999999984 999999997 67887 9999966543 3466644
No 23
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=97.97 E-value=2.1e-06 Score=82.65 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=46.5
Q ss_pred HHhhcccccccCCCceEEee-cCCCceeeeccC------CCCCCCCCCc-----cccc-HHHHHHHHhc
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS------IGPHYSGNDP-----REMR-LVGALREVLA 77 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~------~g~qfhpes~-----~G~~-l~~~L~kl~~ 77 (443)
...||...++++|+.++++| ++||.|+|++|+ +|||||||.. .|.. +++|++....
T Consensus 174 v~~~H~~~v~~l~~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~ 242 (254)
T 3fij_A 174 VNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKK 242 (254)
T ss_dssp ECCBCSCEESSCCSSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHS
T ss_pred EEEeccchhhccCCCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHH
Confidence 46789988889999999999 899999999975 7999999972 3455 8888876543
No 24
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=97.93 E-value=4.1e-06 Score=85.27 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=43.3
Q ss_pred hhccccccc--CCCceEEee-c-CCCceeeeccC----CCCCCCCCC---c-cccc-HHHHHHHHh
Q 013432 24 TFWPLLMRA--LPPDVIFIA-D-PEGSIMGGGGS----IGPHYSGND---P-REMR-LVGALREVL 76 (443)
Q Consensus 24 ryhsl~~~~--lp~~~~~~a-~-~~~~im~~~h~----~g~qfhpes---~-~G~~-l~~~L~kl~ 76 (443)
++|+..++. ||+.+++++ + +||.|||++|+ +|||||||+ + .+.. +.+|++.+.
T Consensus 309 ~~H~~aV~~~~Lp~~~~v~a~s~~Dg~ieai~~~~~pi~gVQFHPE~~~~p~d~~~Lf~~Fl~~~~ 374 (379)
T 1a9x_B 309 QNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGNPEASPGPHDAAPLFDHFIELIE 374 (379)
T ss_dssp EEEEEEECSTTCCTTEEEEEEETTTCCEEEEEESSSSEEEESSCTTCSSSCSTTTHHHHHHHHHHH
T ss_pred cCccceEecccCCCCeEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCCCCcccHHHHHHHHHHHHH
Confidence 589998864 999999999 6 78999999985 999999998 2 2344 888887653
No 25
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=97.84 E-value=1.8e-06 Score=80.17 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=36.6
Q ss_pred HHhhcccccccCCCceEEee-cCCCcee--eeccC--CCCCCCCCC--ccccc-HHHHHHHHhcCCC
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIM--GGGGS--IGPHYSGND--PREMR-LVGALREVLAGGH 80 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im--~~~h~--~g~qfhpes--~~G~~-l~~~L~kl~~g~~ 80 (443)
..+|||..+ |+...++| +++|.+| ++++. ||+|||||+ +.|.. ++|||+- .|++
T Consensus 146 ~~~~H~~~v---~~~~~~~a~~~~g~~~~~~v~~~~v~GvQFHPE~s~~~G~~ll~nFl~~--~ge~ 207 (211)
T 4gud_A 146 FYFVHSFAM---PVGDYTIAQCEYGQPFSAAIQAGNYYGVQFHPERSSKAGARLIQNFLEL--RGEN 207 (211)
T ss_dssp EEEEESEEC---CCCTTEEEEEESSSEEEEEEEETTEEEESSCGGGSHHHHHHHHHHHHHC------
T ss_pred EEEEeeEEe---CCCCeEEEEecCCCeEEEEEeCCCEEEEEccCEecCccHHHHHHHHHHH--hccc
Confidence 346777654 66666777 7777655 45554 999999997 77887 9999963 4544
No 26
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=97.81 E-value=9.3e-06 Score=88.83 Aligned_cols=62 Identities=10% Similarity=0.051 Sum_probs=49.0
Q ss_pred HhhcccccccCCCceEEee-cCCCceeeeccC----CCCCCCCCC---ccccc-HHHHHHH-HhcCCCCCHHH
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS----IGPHYSGND---PREMR-LVGALRE-VLAGGHLGYEE 85 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~----~g~qfhpes---~~G~~-l~~~L~k-l~~g~~Lt~eE 85 (443)
..||+..+..+|+.++++| ++ +.|+|++|+ ||+|||||+ +.|.. +++|+.. .....+.+.++
T Consensus 154 ~~~H~~~V~~lp~g~~vlA~s~-~~i~ai~~~~~~i~GvQFHPE~~~t~~g~~ll~nFl~~i~~~~~~~~~~~ 225 (697)
T 2vxo_A 154 LLTHGDSVDKVADGFKVVARSG-NIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTVQN 225 (697)
T ss_dssp CCCSSCCBSSCCTTCEEEEEET-TEEEEEEETTTTEEEESSCTTSSSSTTHHHHHHHHHTTTTCCCSCCCHHH
T ss_pred eeecccceecCCCCeEEEEEeC-CceEEEEeCCCCEEEEEecccCCCCccchhhhhhhhhccccccccchhhH
Confidence 3589999989999999999 64 599999986 999999997 56776 8999844 34445666543
No 27
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=97.78 E-value=6.9e-06 Score=78.29 Aligned_cols=51 Identities=8% Similarity=-0.024 Sum_probs=41.6
Q ss_pred HHhhcccccccCCCceEEee-cCCCceeeeccC--CCCCCCCCCcccccHHHHHHH
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS--IGPHYSGNDPREMRLVGALRE 74 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~--~g~qfhpes~~G~~l~~~L~k 74 (443)
..+||+..+ ++|+.++++| +++|.|||++|+ +|+|||||+... .+++|++.
T Consensus 146 ~~~~H~~~v-~lp~~~~vlA~s~~~~iea~~~~~i~gvQfHPE~~~~-~~~~~~~~ 199 (239)
T 1o1y_A 146 VFQWHGDTF-DLPRRATRVFTSEKYENQGFVYGKAVGLQFHIEVGAR-TMKRWIEA 199 (239)
T ss_dssp EEEEESEEE-CCCTTCEEEEECSSCSCSEEEETTEEEESSBSSCCHH-HHHHHHHH
T ss_pred eEeecCCcc-ccCCCCEEEEEcCCCCEEEEEECCEEEEEeCccCCHH-HHHHHHHH
Confidence 457788876 7999999999 888999999998 999999998432 36666653
No 28
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=97.72 E-value=2.8e-06 Score=78.37 Aligned_cols=52 Identities=6% Similarity=-0.021 Sum_probs=41.6
Q ss_pred HHhhcccccccCCCceEEee-cCC-C-ceeeeccC---CCCCCCCCC--ccccc-HHHHHHHH
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPE-G-SIMGGGGS---IGPHYSGND--PREMR-LVGALREV 75 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~-~-~im~~~h~---~g~qfhpes--~~G~~-l~~~L~kl 75 (443)
..+||+..+..+ .++++| +++ | .|+|++|+ +|+|||||+ +.|.. +++|++..
T Consensus 137 v~~~H~~~v~~~--~~~vla~s~~~g~~~~a~~~~~~i~gvQfHPE~~~~~~~~l~~~f~~~~ 197 (201)
T 1gpw_B 137 YYFVHTYRAVCE--EEHVLGTTEYDGEIFPSAVRKGRILGFQFHPEKSSKIGRKLLEKVIECS 197 (201)
T ss_dssp EEEEESEEEEEC--GGGEEEEEEETTEEEEEEEEETTEEEESSCGGGSHHHHHHHHHHHHHHS
T ss_pred EEEECcceeccC--CCEEEEEEccCCceEEEEEECCCEEEEECCCcccCHhHHHHHHHHHHHh
Confidence 467999988765 578888 665 6 79999986 999999997 55666 88888764
No 29
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=97.71 E-value=1.4e-05 Score=78.32 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=38.8
Q ss_pred cccccCC-CceEEee-cCCCc-eeeeccC----C-CCCCCCCC---cc-ccc-HHHHHHHHh
Q 013432 28 LLMRALP-PDVIFIA-DPEGS-IMGGGGS----I-GPHYSGND---PR-EMR-LVGALREVL 76 (443)
Q Consensus 28 l~~~~lp-~~~~~~a-~~~~~-im~~~h~----~-g~qfhpes---~~-G~~-l~~~L~kl~ 76 (443)
..+..|| +.++++| ++||. |||++|+ + |||||||. +. +.. +.+|++...
T Consensus 214 ~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~lGvQfHPE~~~~~~~~~~lf~~Fv~~~~ 275 (289)
T 2v4u_A 214 NLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSRPMKPSPPYLGLLLAAT 275 (289)
T ss_dssp GGSGGGTTSSEEEEEEETTSCSEEEEEESSSSCEEEESSBGGGGCBTTBCCHHHHHHHHHHH
T ss_pred HHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCeEEEEECCCCCCCCCCchHHHHHHHHHHHH
Confidence 4455799 9999999 88997 9999996 4 99999997 22 444 888887654
No 30
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=97.69 E-value=9.9e-06 Score=77.96 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=36.9
Q ss_pred HHhhcccccccCCCceEEee-cCCCceeeeccC---CCCCCCCCCc
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGNDP 63 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~---~g~qfhpes~ 63 (443)
..+||+..+ ++|+.++++| +++|.+||++++ ||+|||||..
T Consensus 136 v~~~H~~~v-~lp~~~~vlA~s~~~~~~a~~~~~~~~GvQfHPE~~ 180 (250)
T 3m3p_A 136 LFEWHYQTF-SIPPGAVHILRSEHCANQAYVLDDLHIGFQCHIEMQ 180 (250)
T ss_dssp EEEEEEEEE-CCCTTEEEEEEETTEEEEEEEETTTEEEESSCTTCC
T ss_pred EEEEcccee-ecCCCCEEEEEeCCCCEEEEEECCeeEEEEeCCcCC
Confidence 358899887 8999999999 899999999996 9999999983
No 31
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.68 E-value=1.2e-05 Score=73.29 Aligned_cols=52 Identities=10% Similarity=-0.116 Sum_probs=41.7
Q ss_pred HhhcccccccCCCceEEee-cCCCceeeeccC--CCCCCCCCC-cccccHHHHHHHH
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS--IGPHYSGND-PREMRLVGALREV 75 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~--~g~qfhpes-~~G~~l~~~L~kl 75 (443)
.+|||..+..+|+.++++| + |+.+||++|+ +|+|||||- ..+.-+++|++..
T Consensus 134 ~~~Hs~~v~~l~~~~~~~a~~-~~~~~a~~~~~~~gvQfHPE~~~~~~l~~~f~~~~ 189 (191)
T 2ywd_A 134 VFIRAPVFRRLGEGVEVLARL-GDLPVLVRQGKVLASSFHPELTEDPRLHRYFLELA 189 (191)
T ss_dssp EEESCCEEEEECTTCEEEEEE-TTEEEEEEETTEEEESSCGGGSSCCHHHHHHHHHH
T ss_pred EEEcccceeccCCCcEEEEEE-CCEEEEEEECCEEEEEeCCCCCCCcHHHHHHHHHh
Confidence 3589988778999999999 7 5899999998 999999995 3342377777653
No 32
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=97.67 E-value=1.2e-05 Score=78.14 Aligned_cols=52 Identities=6% Similarity=0.029 Sum_probs=40.3
Q ss_pred cccccc-----cC-CCceEEee-cCC----C-ceeeeccC----C-CCCCCCCC---cc-ccc-HHHHHHHHhc
Q 013432 26 WPLLMR-----AL-PPDVIFIA-DPE----G-SIMGGGGS----I-GPHYSGND---PR-EMR-LVGALREVLA 77 (443)
Q Consensus 26 hsl~~~-----~l-p~~~~~~a-~~~----~-~im~~~h~----~-g~qfhpes---~~-G~~-l~~~L~kl~~ 77 (443)
||+.++ .| |+.++++| ++| | .|||++|+ + |||||||+ +. +.. +++|++....
T Consensus 183 Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~~~~~l~~~Fv~~~~~ 256 (273)
T 2w7t_A 183 HRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPMDPAPTYLSFMAAAAK 256 (273)
T ss_dssp ECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSCBTTBCCHHHHHHHHHHHT
T ss_pred cccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCCchHHHHHHHHHHHHH
Confidence 566553 47 88999999 777 6 89999997 4 99999997 22 355 8999987654
No 33
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=97.65 E-value=1.2e-05 Score=73.77 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=42.8
Q ss_pred HhhcccccccCCCceEEee-cCCCceeeeccC--CCCCCCCCCccccc-HHHHHHHHhc
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS--IGPHYSGNDPREMR-LVGALREVLA 77 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~--~g~qfhpes~~G~~-l~~~L~kl~~ 77 (443)
.++|+..+..+|+.++++| + ||.++|++++ +|+|||||...... +++|++.+.+
T Consensus 132 ~~~h~~~v~~~~~~~~v~a~~-d~~~~a~~~~~~~gvQfHPE~~~~~~l~~~fl~~~~~ 189 (196)
T 2nv0_A 132 VFIRAPHILEAGENVEVLSEH-NGRIVAAKQGQFLGCSFHPELTEDHRVTQLFVEMVEE 189 (196)
T ss_dssp EEESCCEEEEECTTCEEEEEE-TTEEEEEEETTEEEESSCTTSSSCCHHHHHHHHHHHH
T ss_pred EEEecceecccCCCcEEEEEE-CCEEEEEEECCEEEEEECCccCCchHHHHHHHHHHHh
Confidence 4567777777899999999 6 7899999998 99999999844444 7778876543
No 34
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=97.59 E-value=1.4e-05 Score=79.46 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=43.6
Q ss_pred Hhhcccccc--------cCCCceEEee-cCCCc---eeeeccC----CCCCCCCCC---cc---------------ccc-
Q 013432 23 NTFWPLLMR--------ALPPDVIFIA-DPEGS---IMGGGGS----IGPHYSGND---PR---------------EMR- 67 (443)
Q Consensus 23 ~ryhsl~~~--------~lp~~~~~~a-~~~~~---im~~~h~----~g~qfhpes---~~---------------G~~- 67 (443)
.+||+..++ .+|+.++++| ++||. ||+++|+ +|||||||. +. +..
T Consensus 189 ~~~H~~~V~~~~~~~~~~l~~g~~v~A~s~dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~l 268 (315)
T 1l9x_A 189 ANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYL 268 (315)
T ss_dssp EEEEEEECBHHHHHTCHHHHHHEEEEEEEESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHH
T ss_pred EEhhhhhcCccccccccccCCCCEEEEEcCCCCEEEEEEeccCCCCEEEEEeCCCCCcccccccccCCccHHHHHHHHHH
Confidence 469999997 7899999999 77886 6777884 999999996 22 224
Q ss_pred HHHHHHHHhcCC
Q 013432 68 LVGALREVLAGG 79 (443)
Q Consensus 68 l~~~L~kl~~g~ 79 (443)
+.+|++......
T Consensus 269 f~~Fv~~a~~~~ 280 (315)
T 1l9x_A 269 AEFFVNEARKNN 280 (315)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHhcc
Confidence 777887765544
No 35
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=97.56 E-value=2.3e-05 Score=73.46 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=42.3
Q ss_pred HhhcccccccCCCceEEee-cCCCceeeeccC--CCCCCCCCCccccc-HHHHHHHHh
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS--IGPHYSGNDPREMR-LVGALREVL 76 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~--~g~qfhpes~~G~~-l~~~L~kl~ 76 (443)
.++|+..+..+|+.++++| + ||.++|++++ +|+|||||...... +++|++.+.
T Consensus 154 ~~~h~~~v~~l~~~~~v~a~s-dg~~ea~~~~~i~GvQfHPE~~~~~~l~~~fl~~~~ 210 (219)
T 1q7r_A 154 VFIRAPHIVEAGDGVDVLATY-NDRIVAARQGQFLGCSFHPELTDDHRLMQYFLNMVK 210 (219)
T ss_dssp EESSCCEEEEECTTCEEEEEE-TTEEEEEEETTEEEESSCGGGSSCCHHHHHHHHHHH
T ss_pred EEEecceeeccCCCcEEEEEc-CCEEEEEEECCEEEEEECcccCCCHHHHHHHHHHHH
Confidence 3567777777899999999 7 7899999998 99999999844334 778887653
No 36
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=97.45 E-value=2.5e-05 Score=72.51 Aligned_cols=50 Identities=8% Similarity=-0.085 Sum_probs=39.2
Q ss_pred HhhcccccccCCCceEEee-cCCCceeeeccC--CCCCCCCCCccccc-HHHHHH
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS--IGPHYSGNDPREMR-LVGALR 73 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~--~g~qfhpes~~G~~-l~~~L~ 73 (443)
.++|+..+..+|+.++++| + ||.+||++++ +|+|||||...... +++|++
T Consensus 152 ~~~h~~~v~~~~~~~~v~a~~-d~~~~a~~~~~i~GvQfHPE~~~~~~l~~~fl~ 205 (208)
T 2iss_D 152 IFIRAPRIVETGKNVEILATY-DYDPVLVKEGNILACTFHPELTDDLRLHRYFLE 205 (208)
T ss_dssp EESSCCEEEEECSSCEEEEEE-TTEEEEEEETTEEEESSCGGGSSCCHHHHHHHT
T ss_pred EEEeCcccccCCCCcEEEEEE-CCEEEEEEECCEEEEEeCCCcCCcHHHHHHHHH
Confidence 4567776667899999999 6 6999999988 99999999844333 666664
No 37
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=97.44 E-value=1.3e-05 Score=73.80 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=35.1
Q ss_pred HhhcccccccCCCceEEee-cCC-C-ceeeeccC---CCCCCCCCC--ccccc-H---HHHHH
Q 013432 23 NTFWPLLMRALPPDVIFIA-DPE-G-SIMGGGGS---IGPHYSGND--PREMR-L---VGALR 73 (443)
Q Consensus 23 ~ryhsl~~~~lp~~~~~~a-~~~-~-~im~~~h~---~g~qfhpes--~~G~~-l---~~~L~ 73 (443)
.++||..+ .+++. ++ | +++ | ++|+++|+ +|+|||||+ +.|.. + ++|++
T Consensus 139 ~~~Hs~~~-~~~~~-~v-a~s~~~g~~~~~~~~~~~i~gvQfHPE~~~~~g~~l~~~~~~F~~ 198 (200)
T 1ka9_H 139 YFANSYYG-PLTPY-SL-GKGEYEGTPFTALLAKENLLAPQFHPEKSGKAGLAFLALARRYFE 198 (200)
T ss_dssp EEEESEEC-CCCTT-CC-EEEEETTEEEEEEEECSSEEEESSCTTSSHHHHHHHHHHHHHHC-
T ss_pred EEeccccc-CCCCC-cE-EEEEeCCeEEEEEEeeCCEEEEecCCCcCccchhHHHHHHHHHHh
Confidence 47899988 65543 45 6 555 6 89999987 999999998 45555 6 66664
No 38
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=97.43 E-value=6.6e-05 Score=69.36 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=37.1
Q ss_pred hhc---ccccccCCCceEEee-cCC--C---ceeeeccC----CCCCCCCCC--------ccccc-HHHHHHHH
Q 013432 24 TFW---PLLMRALPPDVIFIA-DPE--G---SIMGGGGS----IGPHYSGND--------PREMR-LVGALREV 75 (443)
Q Consensus 24 ryh---sl~~~~lp~~~~~~a-~~~--~---~im~~~h~----~g~qfhpes--------~~G~~-l~~~L~kl 75 (443)
++| |..+. |+.++++| +++ | .|+|++|+ +|+|||||. +.|.. +++|++..
T Consensus 140 ~~H~~~s~~~~--~~~~~~~a~~~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~ 211 (213)
T 3d54_D 140 IAHGFGRYVKI--DDVNVVLRYVKDVNGSDERIAGVLNESGNVFGLMPHPERAVEELIGGEDGKKVFQSILNYL 211 (213)
T ss_dssp CCBSSCEEECS--SCCEEEEEESSCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTTTTCSTTSHHHHHHHHHC
T ss_pred eecCceEEEec--CCCcEEEEEcCCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHhhhcCccHHHHHHHHHHh
Confidence 477 66552 57788888 665 4 89999884 999999996 23555 88888654
No 39
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=97.36 E-value=4.6e-05 Score=72.21 Aligned_cols=51 Identities=6% Similarity=-0.096 Sum_probs=40.1
Q ss_pred HHhhcccccccCCCceEEee-cCCCceeeeccC---CCCCCCCCCcccccHHHHHHH
Q 013432 22 MNTFWPLLMRALPPDVIFIA-DPEGSIMGGGGS---IGPHYSGNDPREMRLVGALRE 74 (443)
Q Consensus 22 ~~ryhsl~~~~lp~~~~~~a-~~~~~im~~~h~---~g~qfhpes~~G~~l~~~L~k 74 (443)
..+||+.. .++|+.++++| +++|.++|++++ +|+|||||.. ...+++|++.
T Consensus 139 v~~~H~~~-~~lp~~~~vla~s~~~~~~a~~~~~~v~gvQfHPE~~-~~~~~~~~~~ 193 (236)
T 3l7n_A 139 VGHWHGDM-PGLPDKAQVLAISQGCPRQIIKFGPKQYAFQCHLEFT-PELVAALIAQ 193 (236)
T ss_dssp EEEEEEEE-CCCCTTCEEEEECSSCSCSEEEEETTEEEESSBSSCC-HHHHHHHHHH
T ss_pred EEEecCCc-ccCCChheEEEECCCCCEEEEEECCCEEEEEeCCCCC-HHHHHHHHHh
Confidence 35678865 57999999999 889999999986 9999999985 1226666654
No 40
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=97.11 E-value=0.00014 Score=77.08 Aligned_cols=43 Identities=7% Similarity=0.036 Sum_probs=34.9
Q ss_pred CCceEEee-cCCC-ceeeeccC----C-CCCCCCCC---cc-ccc-HHHHHHHHh
Q 013432 34 PPDVIFIA-DPEG-SIMGGGGS----I-GPHYSGND---PR-EMR-LVGALREVL 76 (443)
Q Consensus 34 p~~~~~~a-~~~~-~im~~~h~----~-g~qfhpes---~~-G~~-l~~~L~kl~ 76 (443)
|+.+++++ ++|| .|||++|+ | |||||||+ +. |.. +.+|++...
T Consensus 483 ~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~~~~p~~g~~LF~~Fv~aa~ 537 (545)
T 1s1m_A 483 DAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAAS 537 (545)
T ss_dssp HTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCceEEEEeCCCCEEEEEeCCCCCCCCCCChHHHHHHHHHHHH
Confidence 38899999 8888 79999997 5 99999997 33 555 888887654
No 41
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=97.01 E-value=0.00021 Score=75.11 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=35.2
Q ss_pred CCceEEee-cCCCceeeeccC-----CCCCCCCCC---c-cccc-HHHHHHHH
Q 013432 34 PPDVIFIA-DPEGSIMGGGGS-----IGPHYSGND---P-REMR-LVGALREV 75 (443)
Q Consensus 34 p~~~~~~a-~~~~~im~~~h~-----~g~qfhpes---~-~G~~-l~~~L~kl 75 (443)
++.|+++| ++||.|||++|+ +|||||||. + .+.. +++|++..
T Consensus 480 ~~GL~vsA~s~DG~IEAIE~~~~pf~vGVQfHPE~~~~p~~~~~LF~~Fv~Aa 532 (535)
T 3nva_A 480 DAGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAV 532 (535)
T ss_dssp HTTCEEEEECTTCCEEEEECTTSSCEEEESSCGGGGCCSSSCCHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCEEEEEeCCCCcEEEEEeCCEecCCCCChhHHHHHHHHHH
Confidence 67899999 999999999987 699999997 2 3555 88888764
No 42
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=96.98 E-value=0.00017 Score=76.53 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=35.7
Q ss_pred cCC-CceEEee-cCCC------ceeeeccC----C-CCCCCCCC---cc-ccc-HHHHHHHHh
Q 013432 32 ALP-PDVIFIA-DPEG------SIMGGGGS----I-GPHYSGND---PR-EMR-LVGALREVL 76 (443)
Q Consensus 32 ~lp-~~~~~~a-~~~~------~im~~~h~----~-g~qfhpes---~~-G~~-l~~~L~kl~ 76 (443)
.+| +.+++++ ++|| .|||++|+ | |||||||+ +. |.. +++|++...
T Consensus 482 ~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~~Fv~aa~ 544 (550)
T 1vco_A 482 GLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAAL 544 (550)
T ss_dssp HHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHHHH
T ss_pred ccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHHHHHHHHH
Confidence 466 6899999 7665 89999997 6 99999997 32 665 889987654
No 43
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=96.34 E-value=0.00027 Score=75.36 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=38.3
Q ss_pred HhhcccccccC-------CCceEEee-cC---CCceeeeccC--CCCCCCCCC--ccccc-HHHHHHH
Q 013432 23 NTFWPLLMRAL-------PPDVIFIA-DP---EGSIMGGGGS--IGPHYSGND--PREMR-LVGALRE 74 (443)
Q Consensus 23 ~ryhsl~~~~l-------p~~~~~~a-~~---~~~im~~~h~--~g~qfhpes--~~G~~-l~~~L~k 74 (443)
-+|||+.+..+ |+.+.++| ++ |+.|||+++. ||+|||||- +.|.. +++|++.
T Consensus 147 ~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~~~i~GvQFHPE~s~~~g~~l~~~Fl~~ 214 (555)
T 1jvn_A 147 YFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKNNIFATQFHPEKSGKAGLNVIENFLKQ 214 (555)
T ss_dssp EEEESEECBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEETTEEEESSBGGGSHHHHHHHHHHHHTT
T ss_pred EEEEEEEEEecccccccCCCCCEEEEEEcCCCCCeEEEEEeCCEEEEEeCcEecChhHHHHHHHHHhc
Confidence 35888877532 56677877 55 5789999987 999999995 44555 7777754
No 44
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=96.23 E-value=0.0011 Score=62.06 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=37.8
Q ss_pred cccccccC-CCceEEee-cC-----CCceeeeccC--CCCCCCCCCccccc-HHHHHHHH
Q 013432 26 WPLLMRAL-PPDVIFIA-DP-----EGSIMGGGGS--IGPHYSGNDPREMR-LVGALREV 75 (443)
Q Consensus 26 hsl~~~~l-p~~~~~~a-~~-----~~~im~~~h~--~g~qfhpes~~G~~-l~~~L~kl 75 (443)
|+..+.++ |+.++++| ++ |+.+.|++++ +|+|||||-..... +++|++.+
T Consensus 154 h~~~v~~~~~~~~~vla~~~~~~~g~~~~~a~~~~~v~gvQfHPE~~~~~~l~~~Fl~~~ 213 (227)
T 2abw_A 154 RAPYIREILSDEVKVLATFSHESYGPNIIAAVEQNNCLGTVFHPELLPHTAFQQYFYEKV 213 (227)
T ss_dssp SCCEEEEECCTTCEEEEEEEETTTEEEEEEEEEETTEEEESSCGGGSSCCHHHHHHHHHH
T ss_pred EcceEeecCCCCcEEEEEcccccCCCCceEEEEECCEEEEEECCeeCCCcHHHHHHHHHH
Confidence 44445566 99999998 64 7889999887 99999999643334 77787764
No 45
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=87.12 E-value=0.27 Score=48.16 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=29.4
Q ss_pred ccCCCceEEee-cCCCceeeecc---C-CCCCCCCCCcccccHHHHHHHHhcC
Q 013432 31 RALPPDVIFIA-DPEGSIMGGGG---S-IGPHYSGNDPREMRLVGALREVLAG 78 (443)
Q Consensus 31 ~~lp~~~~~~a-~~~~~im~~~h---~-~g~qfhpes~~G~~l~~~L~kl~~g 78 (443)
..+| .+++.| ++.+-+.+++- + +|+|||||-....--..+.+.+.+|
T Consensus 203 ~~~p-ga~vLA~S~~~~~~~~~~~~~~~~~vQgHpEyd~~~l~~ey~rd~~~~ 254 (301)
T 2vdj_A 203 REVK-ELTLLANSEEAGVHLVIGQEGRQVFALGHSEYSCDTLKQEYERDRDKG 254 (301)
T ss_dssp HTCT-TEEEEEEETTTEEEEEEEGGGTEEEECSCTTCCTTHHHHHHHHHHHHT
T ss_pred cCCC-CCEEEEeCCCCcceEEEecCCCEEEEECCCCCCHHHHHHHHHHHHHcc
Confidence 3455 899999 77776666643 3 9999999963332222344444443
No 46
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=82.21 E-value=0.73 Score=45.37 Aligned_cols=44 Identities=14% Similarity=0.019 Sum_probs=27.8
Q ss_pred CceEEee-cCCCceeeecc---C-CCCCCCCCCcccccHHHHHHHHhcC
Q 013432 35 PDVIFIA-DPEGSIMGGGG---S-IGPHYSGNDPREMRLVGALREVLAG 78 (443)
Q Consensus 35 ~~~~~~a-~~~~~im~~~h---~-~g~qfhpes~~G~~l~~~L~kl~~g 78 (443)
+.+++.| ++.+-+.+++- + +|+|||||-....--..+.+-+.+|
T Consensus 217 pga~vLA~S~~~~~q~~~~~~~~~~~vQgHPEyd~~~l~~ey~rd~~~g 265 (312)
T 2h2w_A 217 PELEILAESDEAGVYVVANKSERQIFVTGHPEYDRYTLRDEYYRDIGRN 265 (312)
T ss_dssp C-CEEEEEETTTEEEEEECSSSSEEEECSCTTCCTTHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCCCcceEEEecCCCEEEEECCCCCCHHHHHHHHHHHHHcc
Confidence 4899999 87777777754 2 9999999963332222344444444
No 47
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=62.48 E-value=86 Score=29.84 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=85.8
Q ss_pred cHHHHHHHHhcCCCCCHHHH----HHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhc--------CCCHHH-HH-HHHH
Q 013432 67 RLVGALREVLAGGHLGYEEV----QGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--------RETDRE-LK-AYCL 132 (443)
Q Consensus 67 ~l~~~L~kl~~g~~Lt~eEa----~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~K--------geT~eE-la-g~~~ 132 (443)
.+.+.++++.....++.+.. +++-..++ ...+...-.-.|+-.++-+ +.++.+ +. ...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-------~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (297)
T 1j8m_F 6 NLRDTVRKFLTGSSSYDKAVEDFIKELQKSLI-------SADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYD 78 (297)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHH
Confidence 37788888887788998544 44444555 6778888888888776653 234433 22 2233
Q ss_pred HHHhcCC----C-CCCC-CCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHH----HHh
Q 013432 133 AFDDELG----P-PPVA-DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQM----LKF 202 (443)
Q Consensus 133 A~~~~~~----~-~~~~-~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDv----Lea 202 (443)
.+..... + +... ....+-++|.+|.|+.|+-. -.|..++..|-+|..-+.+-.. .++ .+. .+.
T Consensus 79 ~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~---~la~~~~~~g~~v~l~~~D~~r--~~a--~~ql~~~~~~ 151 (297)
T 1j8m_F 79 ELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAG---KLAYFYKKKGFKVGLVGADVYR--PAA--LEQLQQLGQQ 151 (297)
T ss_dssp HHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHH---HHHHHHHHTTCCEEEEECCCSS--SHH--HHHHHHHHHH
T ss_pred HHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHH---HHHHHHHHCCCeEEEEecCCCC--HHH--HHHHHHHhcc
Confidence 3332221 1 2111 12356678999999886322 2444556678999987766422 222 222 344
Q ss_pred CCCCC-----CCCHHHH-HHHHHh---cCceeEEeccchhcH
Q 013432 203 MGAST-----NLSVLQA-KELLED---EEIGFAYVSLREARP 235 (443)
Q Consensus 203 LGi~i-----~~s~~~~-~~~Le~---~g~gf~fl~a~~~~P 235 (443)
.|+++ ..+|.++ .+.++. .+.-+++++.|-.+.
T Consensus 152 ~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 152 IGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHG 193 (297)
T ss_dssp HTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCC
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 56653 2345443 233332 345677777654443
No 48
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=62.35 E-value=4.3 Score=39.61 Aligned_cols=143 Identities=12% Similarity=0.069 Sum_probs=87.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEE
Q 013432 102 APGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCL 181 (443)
Q Consensus 102 ~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~ 181 (443)
+..+.|+-|| ++-+--.=|.|.+||..+++. +...++..-|.+ ..++.|.+|..| +|. ..+++..+|++|+
T Consensus 61 ~~GavPATIa-i~~G~~~VGL~~~eLe~la~~--~~~~K~SrRDl~--~~~a~g~~GaTT--Vaa--Tm~lA~~AGI~VF 131 (316)
T 4ex8_A 61 GAGAVPATIG-IAGGKLVVGLTDSLIERFAST--KGIPKISARDIG--GALAGGGLGATT--VAG--TIVIAERAGIQVF 131 (316)
T ss_dssp TTTCEEEEEE-EETTEEEESCCHHHHHHHHHC--TTCCEECGGGHH--HHHHHCSCBEEC--HHH--HHHHHHHHTCCEE
T ss_pred HcCCCcceEE-EECCEEEEcCCHHHHHHHhcC--CCccccchhhHH--HHHhCCCCcccc--HHH--HHHHHHHCCCcEE
Confidence 4445555555 443333557899999998762 212222211212 236788888877 222 4556667899999
Q ss_pred eecCCCCCCCCC------CcHHHHHHh---------CCCCCCCCHHHHHHHHHhcCceeEEeccchhcHH----------
Q 013432 182 LHGAEWMPPKGG------VTEEQMLKF---------MGASTNLSVLQAKELLEDEEIGFAYVSLREARPS---------- 236 (443)
Q Consensus 182 kHGnr~~ssk~G------s~~aDvLea---------LGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa---------- 236 (443)
-.|+=+-=.+.+ | +|+-|- -|++--++....-+.||..|...+ -|.....|+
T Consensus 132 aTGGiGGVHRgae~t~DIS--aDL~eLarTpV~VVcaG~KsILDi~~TLE~LET~GV~Vv-gy~td~fPaFy~r~Sg~~~ 208 (316)
T 4ex8_A 132 TTAGIGGVHRRGEDTLDIS--PDLLQFRKTKMTVVSGGAKSILDHRLTAEYLETAGVPVY-GYRTDKLAAFVVREADVPV 208 (316)
T ss_dssp ECSCBCCBBTTHHHHCCBC--THHHHTTTCCEEEEESBBCTTBCHHHHHHHHHHTTCCEE-EETCSBCCBTTBSCCSCBC
T ss_pred EeCCccccCCCCCCCcchh--hhHHHhcCCCeEEEecccchhhcchHHHHHHHhCCceEE-EecCCCCceeeeCCCCCcC
Confidence 998765333321 4 677773 378878899999999999666543 223333332
Q ss_pred --------hHHHHhhhcccCCCC--CCCCc
Q 013432 237 --------LYSLIGLREHIKKRP--PVATS 256 (443)
Q Consensus 237 --------~~~l~~vR~~Lg~Rt--PL~np 256 (443)
..+++..++.||+.+ -+.||
T Consensus 209 pr~d~~~e~A~~~~a~~~lgl~~g~lvanP 238 (316)
T 4ex8_A 209 TRMDDLHTAARAAEAHWQVNGPGTVLLTSP 238 (316)
T ss_dssp EEESSHHHHHHHHHHHHHHHCSCEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 445777788888887 34444
No 49
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=56.74 E-value=14 Score=35.81 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=73.8
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCC---CCCCCc
Q 013432 119 MNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMP---PKGGVT 195 (443)
Q Consensus 119 ~KgeT~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~s---sk~Gs~ 195 (443)
.=|.|.+||..++ .+...++..-|.+ ..++.|.+|..| +|. ..+++..+|++|+-.|+=+-= +--=|
T Consensus 71 ~VGL~~~eLe~la---~~~~~K~SrRDl~--~~~a~g~~GaTT--Vaa--Tm~lA~~AGI~VFaTGGiGGVHRgt~DIS- 140 (297)
T 1vkm_A 71 VAGMSEEELEAMM---REGADKVGTREIP--IVVAEGKNAATT--VSA--TIFLSRRIGIEVVVTGGTGGVHPGRVDVS- 140 (297)
T ss_dssp EESCCHHHHHHHH---HHCCEEECGGGHH--HHHHHTCCEEEC--HHH--HHHHHHHHTCCEEECSCBCCBCTTSSCBC-
T ss_pred EECCCHHHHHHHh---cCCCccccHhhHH--HHHhCCCCchhh--HHH--HHHHHHHcCCcEEEecccccccCCCcccc-
Confidence 3467999999887 2222222221211 236678888876 222 345666789999998764321 22334
Q ss_pred HHHHHHh---------CCCCCCCCHHHHHHHHHhcCceeEEeccchhcH------------------HhHHHHhhhcccC
Q 013432 196 EEQMLKF---------MGASTNLSVLQAKELLEDEEIGFAYVSLREARP------------------SLYSLIGLREHIK 248 (443)
Q Consensus 196 ~aDvLea---------LGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~P------------------a~~~l~~vR~~Lg 248 (443)
+|+-|- -|++--++....-+.||..|...+= |.....| ...+++..++.||
T Consensus 141 -aDL~eL~rTpV~VVcaG~KsILDi~~TLE~LET~GV~Vvg-y~t~~fPaF~tr~Sg~~~p~~d~~~e~A~~~~~~~~lg 218 (297)
T 1vkm_A 141 -QDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVG-FRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESMKEME 218 (297)
T ss_dssp -HHHHHHTTCCEEEEESBBCTTSCHHHHHHHHHHTTCCEEE-ESCSBCCBTTBSCCSCBCCEECSHHHHHHHHHHHHHTT
T ss_pred -hhHHHhcCCCeEEEecccchhhcchhHHHHHHhCCceEEE-ecCCCCCceecCCCCCcCCCCCCHHHHHHHHHHHHHhC
Confidence 787773 4777778899999999996654431 1222222 2456677788888
Q ss_pred CCC
Q 013432 249 KRP 251 (443)
Q Consensus 249 ~Rt 251 (443)
+.+
T Consensus 219 l~~ 221 (297)
T 1vkm_A 219 LEK 221 (297)
T ss_dssp CCS
T ss_pred CCC
Confidence 877
No 50
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=55.68 E-value=72 Score=26.16 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHhcCCcCCCCCCC----CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 013432 78 GGHLGYEEVQGVLRDVLPLQVDNKAPG----VSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 138 (443)
Q Consensus 78 g~~Lt~eEa~~~~~~il~~~~~~~~g~----~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~ 138 (443)
.+.||.+|..++...++. .+. ++...|+.+...+.-.-.|++||.-...-+....
T Consensus 41 ~R~Ltddev~~Va~~L~~------~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~RV~arLaa~G 99 (107)
T 3ol3_A 41 KRSLTEDEVVRAAQAILR------STDGQSPVTDDDIRNAVHQIIEKEPTAEEINQVAARLASVG 99 (107)
T ss_dssp TCCCCHHHHHHHHHHHHH------HCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHHHh------ccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhcC
Confidence 346999999999999983 333 8899999999999988899999998877776544
No 51
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=53.04 E-value=57 Score=27.02 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHHhcCCcCCCCCC-------CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 013432 78 GGHLGYEEVQGVLRDVLPLQVDNKAP-------GVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 138 (443)
Q Consensus 78 g~~Lt~eEa~~~~~~il~~~~~~~~g-------~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~ 138 (443)
++.||.+|..++...++. +| .++..+|+.+..-..-.-.|+++|.-...-+-...
T Consensus 38 ~R~LtdeEV~~Va~~L~~------~~~~~~~~~~i~~~dI~v~It~VT~e~P~peDI~RV~arLaA~G 99 (112)
T 2m0n_A 38 RRTLTEEQVQEVVAKLTD------PESSAQIDGVVSKDEIEKFIADVTKDEPTAQDISRVASRLAAGG 99 (112)
T ss_dssp CSSCCHHHHHHHHHHHTC------TTTHHHHTSCCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHHCC
T ss_pred hccCCHHHHHHHHHHHHh------ccCcccCCCCCCHHHHHHHHHHHhccCcCHHHHHHHHHHHHhcC
Confidence 345999999999999983 33 38889999999999888899999998877776654
No 52
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=49.17 E-value=23 Score=28.92 Aligned_cols=54 Identities=7% Similarity=0.081 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 013432 79 GHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 138 (443)
Q Consensus 79 ~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~ 138 (443)
+.||.+|..++...++. +|.+++..|+++..-+.-.-.|+++|.-...-+....
T Consensus 37 r~Ltdeev~~Va~~L~~------~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~G 90 (103)
T 2kvc_A 37 RRLSHDEVKAVANELMR------LGDFDQIDIGVVITHFTDELPSPEDVERVRARLAAQG 90 (103)
T ss_dssp TTSCHHHHHHHHHHHHH------HTSSCSSCHHHHHHSCCSSCSCHHHHHHHHHHHGGGC
T ss_pred ccCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC
Confidence 57999999999999984 7789999999999988888889999988877776554
No 53
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=45.93 E-value=30 Score=28.67 Aligned_cols=55 Identities=5% Similarity=0.057 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 013432 78 GGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDEL 138 (443)
Q Consensus 78 g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~ 138 (443)
.+.||.+|..++...++. +|.+++..|+++..-+.-.-.|+++|.-...-+....
T Consensus 38 ~r~Ltdeev~~Va~~L~~------~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~G 92 (112)
T 2lky_A 38 TRRLTNDEIKAIAEDLEK------RAHFDHIDIGVLITQMTDEMPREEDIERVRRHLALQG 92 (112)
T ss_dssp TTTCCHHHHHHHHHHHHH------HCCCSCCCSHHHHHHHTTCCCCHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC
Confidence 378999999999999984 7789999999999999888889999988877776544
No 54
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=45.88 E-value=29 Score=28.11 Aligned_cols=50 Identities=24% Similarity=0.146 Sum_probs=32.0
Q ss_pred HHHHHHHHh--cCCCCCHHHHHHHHHHhcCC-cCCCCCCCCCHHHHHHHHHHH
Q 013432 68 LVGALREVL--AGGHLGYEEVQGVLRDVLPL-QVDNKAPGVSESLLSAFLIGQ 117 (443)
Q Consensus 68 l~~~L~kl~--~g~~Lt~eEa~~~~~~il~~-~~~~~~g~~~~~qigAfL~al 117 (443)
+.+|...-. +|-.+|++||++++--|--. --.+...++||.|+++|=...
T Consensus 47 LskWy~~aA~~~G~~~~~d~ARE~vYGMpy~eWKa~~Q~eAt~eQ~aafe~~~ 99 (104)
T 3fyb_A 47 LAKWLMEAATEQGVELDYDGAREYVYGMPFAEWKTLYQKPASEAQLAAFEAKQ 99 (104)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHSSCHHHHHHHHCCCCCHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHhCCCHHHHHHHHCCCCCHHHHHHHHHhh
Confidence 666776654 48899999999998654100 000014678999999985543
No 55
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=44.87 E-value=79 Score=30.52 Aligned_cols=110 Identities=11% Similarity=0.037 Sum_probs=68.0
Q ss_pred HHHHHHHHhcC-CCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHh--cCCC-HHHHHH-HHHHHHh----cC
Q 013432 68 LVGALREVLAG-GHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRM--NRET-DRELKA-YCLAFDD----EL 138 (443)
Q Consensus 68 l~~~L~kl~~g-~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~--KgeT-~eElag-~~~A~~~----~~ 138 (443)
+.+.|+++..+ ..++.+-.+++-..++ ...+...-.-.|+-.++- +++. .+.+.. +.+.+.+ ..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~-------~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (320)
T 1zu4_A 18 FSKDIKKLSKKYKQADDEFFEELEDVLI-------QTDMGMKMVLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDND 90 (320)
T ss_dssp HHHHHHHHHHTCCCCSHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhCccc
Confidence 66777888777 6799877777878888 788888888888887764 3432 222111 1111211 11
Q ss_pred -----CCCCC--CCCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCC
Q 013432 139 -----GPPPV--ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEW 187 (443)
Q Consensus 139 -----~~~~~--~~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~ 187 (443)
..+.+ .....+-++|.+|.|+.|+-. -.|..++..|-+|..-+.+-
T Consensus 91 ~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~---~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 91 WTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLA---KMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp C----CCCCCCTTSCEEEEEESSTTSSHHHHHH---HHHHHHHHTTCCEEEEECCC
T ss_pred ccccccCccccCCCCeEEEEECCCCCCHHHHHH---HHHHHHHHCCCeEEEEeCCC
Confidence 12222 122367789999999876321 24445667789999877653
No 56
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=44.05 E-value=1.1e+02 Score=29.23 Aligned_cols=106 Identities=16% Similarity=0.072 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHhcCC---CCCC
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKA-YCLAFDDELG---PPPV 143 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag-~~~A~~~~~~---~~~~ 143 (443)
+.+.|+++..|+.++.+-.+++-..++ .-.++..-.-.|+-.++- .+++ +.. +.+.+.+... ++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~L~-------~~dv~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~~~l~~~~~~~~ 99 (306)
T 1vma_A 30 FFGRVVKLLKGKKLDDETREELEELLI-------QADVGVETTEYILERLEE--KDGD-ALESLKEIILEILNFDTKLNV 99 (306)
T ss_dssp THHHHHHHHTTCCCCHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHTT--CCSC-HHHHHHHHHHHHTCSCCCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHh--cCHH-HHHHHHHHHHHHhCCCCCCcc
Confidence 666777777766899877788888888 788888888888877654 3333 332 3333333322 2221
Q ss_pred --CCCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCC
Q 013432 144 --ADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAE 186 (443)
Q Consensus 144 --~~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr 186 (443)
..+..+-++|.+|.|+.|+-. ..|..++..|-+|..-+.+
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~---~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCG---KLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHH---HHHHHHHHTTCCEEEEEEC
T ss_pred cCCCCeEEEEEcCCCChHHHHHH---HHHHHHHhcCCEEEEEccc
Confidence 112367789999999886321 2344455668888887754
No 57
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=41.93 E-value=88 Score=29.74 Aligned_cols=129 Identities=15% Similarity=0.036 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCHHHHHHHHH-HHHhcCCC---CCCC-CCCCceEEcCCCCCCCccccchHHHHH
Q 013432 102 APGVSESLLSAFLIGQRM-----NRETDRELKAYCL-AFDDELGP---PPVA-DVKSLTHYGEPYDGNTRFFRSTLFVAA 171 (443)
Q Consensus 102 ~g~~~~~qigAfL~alr~-----KgeT~eElag~~~-A~~~~~~~---~~~~-~~~~vD~~GtggDG~~t~nisT~l~A~ 171 (443)
..+++....-.|+-.++- ++.+++++...+. .+.+...+ .... ....+-++|.+|.|+.|+-. ..|.
T Consensus 51 ~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~vi~lvG~~GsGKTTl~~---~LA~ 127 (296)
T 2px0_A 51 ETGIKESTKTNTLKKLLRFSVEAGGLTEENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLA---KLAA 127 (296)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHSSSCCCTTTHHHHHHHHHHTTSCCGGGSCCCCCSSEEEEEESTTSSHHHHHH---HHHH
T ss_pred HCCCCHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHhCCcccccccCCCcEEEEECCCCCCHHHHHH---HHHH
Confidence 455666555555554421 1334444444433 33332211 1111 13367789999999886322 2333
Q ss_pred HHh-cCCCeEEeecCCCCCCCCCCcHHHHHHh----CCCCC--CCCHHHHHHHHHhc-CceeEEeccchhcHHh
Q 013432 172 VRS-CYGESCLLHGAEWMPPKGGVTEEQMLKF----MGAST--NLSVLQAKELLEDE-EIGFAYVSLREARPSL 237 (443)
Q Consensus 172 vlA-a~Gv~V~kHGnr~~ssk~Gs~~aDvLea----LGi~i--~~s~~~~~~~Le~~-g~gf~fl~a~~~~Pa~ 237 (443)
.++ ..|.+|..-+.+.. +.+. .+.|+. +|+++ ..++.++...+... +.-+++++.+-..|..
T Consensus 128 ~l~~~~G~~V~lv~~D~~--r~~a--~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~dlvIiDT~G~~~~~ 197 (296)
T 2px0_A 128 ISMLEKHKKIAFITTDTY--RIAA--VEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDHVFVDTAGRNFKD 197 (296)
T ss_dssp HHHHTTCCCEEEEECCCS--STTH--HHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSSEEEEECCCCCTTS
T ss_pred HHHHhcCCEEEEEecCcc--cchH--HHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCCEEEEeCCCCChhh
Confidence 344 47989988776552 2222 444543 56664 34566665555432 3557777766665543
No 58
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=40.66 E-value=13 Score=37.43 Aligned_cols=170 Identities=12% Similarity=0.046 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCCC----ccc---cchHHHHHHHhc
Q 013432 110 LSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT----RFF---RSTLFVAAVRSC 175 (443)
Q Consensus 110 igAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~~----t~n---isT~l~A~vlAa 175 (443)
..+++.+...+|+| .+++....++|+.....+...+ .+-+.|.++.+.. ... -++.+++.+++.
T Consensus 26 ~r~Llaa~la~g~t~i~n~~~~~dv~~t~~~L~~lGa~i~~~~--~~~I~~~~~~~~~~~~d~~~~~ras~~l~~alla~ 103 (419)
T 1ejd_A 26 LPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERXG--SVWIDASNVNNFSAPYDLVKTMRASIWALGPLVAR 103 (419)
T ss_dssp HHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESS--SEEEECTTCCCCEECHHHHTTCGGGGGGHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEecCCCcHHHHHHHHHHHHCCCEEEEcc--eEEEecCCCCCCcCchHHhhhhhHHHHHHHHHhhc
Confidence 45566666677752 5788889999998776654322 3334444432111 001 222345666666
Q ss_pred CC-CeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHHhHHHHhhhcccCCCCCCC
Q 013432 176 YG-ESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVA 254 (443)
Q Consensus 176 ~G-v~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa~~~l~~vR~~Lg~RtPL~ 254 (443)
.| +.|...|+..+..+--..+.|.|++||+++.. + .|+..+-.. +.+.+.+-.+...+.=.
T Consensus 104 ~~~~~v~l~G~~~l~~rp~~~~~~~L~~mGa~i~~----------~--~g~~~v~~~------~~L~g~~i~~~~~s~~~ 165 (419)
T 1ejd_A 104 FGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKL----------E--EGYVKASVN------GRLKGAHIVMDKVSVGA 165 (419)
T ss_dssp HSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEE----------E--TTEEEEECS------SSCBCCEEECSSCCHHH
T ss_pred CCceEEEecCCcccCCCchHHHHHHHHHCCCEEEE----------c--CCEEEEEEc------CCccceEEecCCCCHHH
Confidence 55 68889999888776555568999999998752 1 122211111 01222222222211001
Q ss_pred Cchhhhhhhhcc-CCCeEEEeecCCCchHHHHHHHHHcCCc------eEEEEec
Q 013432 255 TSEKVQQFVRAQ-GREAIVAGFYHEGYEEPLLMLMKRRGVH------SGLVVKG 301 (443)
Q Consensus 255 np~~~~~~lnp~-~~~~~v~GV~h~~~~~~~a~~l~~lG~~------~alVv~G 301 (443)
++.-+ ++-|. .....+.++.++++.+.+++.|+.+|.+ ..+.|+|
T Consensus 166 ~~~ll--~aa~~a~G~t~I~~~~~e~~i~~t~~~L~~~Ga~i~~~~~~~i~I~g 217 (419)
T 1ejd_A 166 TVTIM--SAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEG 217 (419)
T ss_dssp HHHHH--HHHTTSBSEEEEETCCCCHHHHHHHHHHHHTTCEEECTTSSEEEEEC
T ss_pred HHHHH--HHHhcCCCcEEEEeCCCCchHHHHHHHHHHCCCEEEEccCCEEEEeC
Confidence 11111 11222 1234566888888999899999999974 2466676
No 59
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.03 E-value=23 Score=26.84 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=28.9
Q ss_pred CCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHH
Q 013432 191 KGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 236 (443)
Q Consensus 191 k~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa 236 (443)
.++. .|.++.||++...+.+++++...+ . +..|||-
T Consensus 5 ~~~~--~~~y~iLgv~~~as~~eIk~ayr~--l------~~~~HPD 40 (82)
T 2ej7_A 5 SSGM--VDYYEVLDVPRQASSEAIKKAYRK--L------ALKWHPD 40 (82)
T ss_dssp CSSS--CCHHHHTTCCTTCCHHHHHHHHHH--H------HTTSCTT
T ss_pred CCCC--cCHHHHcCCCCCCCHHHHHHHHHH--H------HHHHCcC
Confidence 3444 689999999999999999999988 2 3457775
No 60
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=34.77 E-value=83 Score=30.86 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEe
Q 013432 103 PGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLL 182 (443)
Q Consensus 103 g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~k 182 (443)
..+.|+-|| ++-+--.=|.+.+||.-+++.-.+ ..++..-|.+. .+..|.+|..| +|. ..+++..+|++|+-
T Consensus 81 ~GavPATIa-iidG~~~vGL~~~ele~la~~~~~-v~K~SrRDl~~--~~a~~~~GaTT--Vaa--Tm~lA~~AGI~VFa 152 (335)
T 4gim_A 81 QGAVPATIA-IIGGVMKVGLSKEEIELLGREGHN-VTKVSRRDLPF--VVAAGKNGATT--VAS--TMIIAALAGIKVFA 152 (335)
T ss_dssp TTCEEEEEE-EETTEEEESCCHHHHHHHHHHGGG-SEEECTTTHHH--HHHTTCCEEEC--HHH--HHHHHHHTTCCEEE
T ss_pred CCCCCceEE-EECCEeEEcCCHHHHHHHHhcCCC-ceeeecccHHH--HhhcCCCcccc--HHH--HHHHHHHCCCcEEe
Confidence 334444443 222233457899999998754221 11221112111 25678888776 222 45566778999999
Q ss_pred ecCCCCCCCCC------CcHHHHHHh---------CCCCCCCCHHHHHHHHHhcCceeEEeccchhcHH-----------
Q 013432 183 HGAEWMPPKGG------VTEEQMLKF---------MGASTNLSVLQAKELLEDEEIGFAYVSLREARPS----------- 236 (443)
Q Consensus 183 HGnr~~ssk~G------s~~aDvLea---------LGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa----------- 236 (443)
.|+=+-=.+.+ | +|+.|- -|++-=++....-+.||..|+..+ -|.....|+
T Consensus 153 TGGIGGVHRgae~t~DIS--ADL~eLarTpV~VVcAG~KSILDi~~TLE~LET~GVpVv-gy~td~fPaFy~r~Sg~~~~ 229 (335)
T 4gim_A 153 TGGIGGVHRGAEHTFDIS--ADLQELANTNVTVVCAGAASILDLGLTTEYLETFGVPLI-GYQTKALPAFFCRTSPFDVS 229 (335)
T ss_dssp CSCCCCBBTTHHHHCCBC--HHHHHHHHSCCEEEECBCCTTBCHHHHHHHHHHTTCCEE-EETCSBCCBTTBSCCSSBCS
T ss_pred eCCcCccCCCCCCCcccc--chHHHhccCCeEEEeecchhhccchhHHHHHHhcCceEE-EecCCCCceeeccCCCCcCc
Confidence 98765333322 3 677663 377777888999999999665443 122222222
Q ss_pred --------hHHHHhhhcccCCCC
Q 013432 237 --------LYSLIGLREHIKKRP 251 (443)
Q Consensus 237 --------~~~l~~vR~~Lg~Rt 251 (443)
..+++..|++||+.+
T Consensus 230 ~rvd~~~e~A~i~~~~~~lgl~~ 252 (335)
T 4gim_A 230 IRLDSASEIARAMVVKWQSGLNG 252 (335)
T ss_dssp EEECCHHHHHHHHHHHHHTTCCS
T ss_pred ceeCCHHHHHHHHHHHHHcCCCC
Confidence 345677788888877
No 61
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=34.61 E-value=91 Score=20.17 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 013432 106 SESLLSAFLIGQRMNRETDRELKAYCLAFDDE 137 (443)
Q Consensus 106 ~~~qigAfL~alr~KgeT~eElag~~~A~~~~ 137 (443)
+..|.-||--.|.+.+.|.|+--++++.+++.
T Consensus 2 ~~~qQnaFYevLh~~nLtEeQrn~yI~slkdd 33 (34)
T 1l6x_B 2 NMQCQRRFYEALHDPNLNEEQRNAKIKSIRDD 33 (34)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHhHHHHHhcc
Confidence 56788999999999999999999999988763
No 62
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=32.13 E-value=2.1e+02 Score=28.73 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=85.3
Q ss_pred cHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhc--------CCCHHH-HHHHHH-
Q 013432 67 RLVGALREVLAGGHLGY----EEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--------RETDRE-LKAYCL- 132 (443)
Q Consensus 67 ~l~~~L~kl~~g~~Lt~----eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~K--------geT~eE-lag~~~- 132 (443)
.+.+.++++.....||. +-.+++...++ +.++.....-.|...++.+ +.++.+ +...+.
T Consensus 7 ~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll-------~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~ 79 (432)
T 2v3c_C 7 NLNKALNKLKAAAFVDKKLIKEVIKDIQRALI-------QADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYE 79 (432)
T ss_dssp HHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHH-------HTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHH
Confidence 36777888876667886 34456667777 6888888888887777653 234544 333322
Q ss_pred HHHhcCC----CCCCC--CCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCC
Q 013432 133 AFDDELG----PPPVA--DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGAS 206 (443)
Q Consensus 133 A~~~~~~----~~~~~--~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~ 206 (443)
.+.+... ++... .+..|-++|.+|.|+.|+-. -.|..++..|.+|+.-..+...+..-..+....+..|++
T Consensus 80 ~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~---~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~ 156 (432)
T 2v3c_C 80 ELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAA---KLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVP 156 (432)
T ss_dssp HHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHH---HHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCC
T ss_pred HHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHH---HHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcc
Confidence 2222211 12111 12367789999999986322 133344556888887665542211100011222334554
Q ss_pred CC------CCHHH-HHHHHHh-cCceeEEeccchhcHH
Q 013432 207 TN------LSVLQ-AKELLED-EEIGFAYVSLREARPS 236 (443)
Q Consensus 207 i~------~s~~~-~~~~Le~-~g~gf~fl~a~~~~Pa 236 (443)
+- .+|.+ +.+.++. .+.-+++++.|-+++.
T Consensus 157 v~~~~~~~~dp~~i~~~~l~~~~~~D~vIIDT~G~~~~ 194 (432)
T 2v3c_C 157 IYGDETRTKSPVDIVKEGMEKFKKADVLIIDTAGRHKE 194 (432)
T ss_dssp EECCSSSCCSSSTTHHHHHHTTSSCSEEEEECCCSCSS
T ss_pred eEecCCCCCCHHHHHHHHHHHhhCCCEEEEcCCCCccc
Confidence 21 12211 2233332 2366778888776653
No 63
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=31.18 E-value=1.9e+02 Score=29.23 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=90.0
Q ss_pred ccc-HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhc--------CCCH-HHHHHH-HHH
Q 013432 65 EMR-LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--------RETD-RELKAY-CLA 133 (443)
Q Consensus 65 G~~-l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~K--------geT~-eElag~-~~A 133 (443)
|.+ +.+.++++.....||.+...++++.|-..++ .-++...-.-.|.--++-+ +.++ +.+... .+.
T Consensus 2 ~~~~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll---~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~e 78 (433)
T 3kl4_A 2 GLENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLI---SSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDE 78 (433)
T ss_dssp CCTTHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---HcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHH
Confidence 444 8899999988888998887666555432222 3456655555555544322 2233 222222 122
Q ss_pred HHhcCC-----CCCCC-CCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHH----HhC
Q 013432 134 FDDELG-----PPPVA-DVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFM 203 (443)
Q Consensus 134 ~~~~~~-----~~~~~-~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvL----eaL 203 (443)
+.+... ..+.. .+..+-++|.+|.|+.|+- .-.|..++..|.+|..-+.+- .+.+. .+-| +.+
T Consensus 79 L~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~---~kLA~~l~~~G~kVllv~~D~--~r~~a--~eqL~~~~~~~ 151 (433)
T 3kl4_A 79 LSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTA---GKLAYFYKKRGYKVGLVAADV--YRPAA--YDQLLQLGNQI 151 (433)
T ss_dssp HHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHH---HHHHHHHHHTTCCEEEEEECC--SCHHH--HHHHHHHHHTT
T ss_pred HHHhcCccccccccccCCCeEEEEECCCCCCHHHHH---HHHHHHHHHcCCeEEEEecCc--cchhH--HHHHHHHHHhc
Confidence 222111 11111 1236778899999988632 224445667899998876553 12222 3333 335
Q ss_pred CCCCC-----CCHHHH-HHHHHh---cCceeEEeccchhcH------HhHHHHhhhccc
Q 013432 204 GASTN-----LSVLQA-KELLED---EEIGFAYVSLREARP------SLYSLIGLREHI 247 (443)
Q Consensus 204 Gi~i~-----~s~~~~-~~~Le~---~g~gf~fl~a~~~~P------a~~~l~~vR~~L 247 (443)
|+++. .+|..+ .+.++. .+.-+++++.|-.++ .+..+..+.+.+
T Consensus 152 gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 152 GVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp TCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred CCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 66532 234433 233333 245677787776555 344444444433
No 64
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=31.13 E-value=23 Score=27.86 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=30.5
Q ss_pred CCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHH
Q 013432 191 KGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 236 (443)
Q Consensus 191 k~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa 236 (443)
....+..|+++.||++.+.+.+++.+...+ + +-.|||-
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrk-------l-a~~~HPD 47 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRR-------L-YLKWHPD 47 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHH-------H-HHHTCTT
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHH-------H-HHHHCCC
Confidence 344445899999999999999999999998 2 4567775
No 65
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.80 E-value=38 Score=26.82 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=27.0
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHH
Q 013432 197 EQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 236 (443)
Q Consensus 197 aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa 236 (443)
.|.++.|||+-..+.+++++...+ . +..|||-
T Consensus 17 ~~~Y~vLgv~~~as~~eIk~ayr~--l------~~~~HPD 48 (99)
T 2yua_A 17 TALYDLLGVPSTATQAQIKAAYYR--Q------CFLYHPD 48 (99)
T ss_dssp SHHHHHHTCCTTCCHHHHHHHHHH--H------HHHSCTT
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHH--H------HHHHCcC
Confidence 699999999999999999999988 2 3457774
No 66
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=29.92 E-value=61 Score=32.58 Aligned_cols=102 Identities=17% Similarity=0.082 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCC----Ccc---ccchH--HHH
Q 013432 107 ESLLSAFLIGQRMNRET-------DRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGN----TRF---FRSTL--FVA 170 (443)
Q Consensus 107 ~~qigAfL~alr~KgeT-------~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~----~t~---nisT~--l~A 170 (443)
..+.-+++.+...+|+| .+++...+++|+.....+...+ ..+-+.|.+..+. ... |-.|. |++
T Consensus 21 s~t~r~Llaa~La~g~t~I~n~~~s~Dv~~~~~~L~~lG~~i~~~~-~~~~I~g~~~~~~~~p~~~id~~~sgt~~rll~ 99 (427)
T 1rf6_A 21 SISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKD-GVITVQGVGMAGLKAPQNALNMGNSGTSIRLIS 99 (427)
T ss_dssp HHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEET-TEEEEECCCSSCCCCCSSCEECTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEccCCCCHHHHHHHHHHHHcCCeEEecC-CEEEEECCCCCCcCCCcceeeccccchHHHHHH
Confidence 34556777777777752 3788888999988776553211 1233444331111 111 22223 455
Q ss_pred HHHhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCC
Q 013432 171 AVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 209 (443)
Q Consensus 171 ~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~ 209 (443)
.+++..+..|...|...+..+-=..+.|.|++||+++..
T Consensus 100 a~la~~~~~v~l~G~~~l~~Rpi~~~l~~L~~mGa~i~~ 138 (427)
T 1rf6_A 100 GVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISG 138 (427)
T ss_dssp HHGGGCSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEE
T ss_pred HHHhcCCcEEEEeCCCccCCCCHHHHHHHHHHCCCEEEE
Confidence 666777789999999887765433458999999988753
No 67
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=28.59 E-value=58 Score=25.54 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=35.5
Q ss_pred CCCCH---HHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013432 79 GHLGY---EEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAF 134 (443)
Q Consensus 79 ~~Lt~---eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~ 134 (443)
.+||. +|.+++|+.+= .|.+|.++..++..+|..+-. ..|.+|+..+.+.+
T Consensus 28 ~~l~~~~~~el~~~F~~~D----~d~~G~I~~~El~~~l~~lg~-~~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 28 VDIPEDELEEIREAFKVFD----RDGNGFISKQELGTAMRSLGY-MPNEVELEVIIQRL 81 (100)
T ss_dssp CCCCGGGHHHHHHHHHHTC----SSCSSCBCHHHHHHHHHHHTC-CCCTTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCCCcCCHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 35664 45677787773 356899999999988877632 35777877776555
No 68
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.08 E-value=22 Score=27.69 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=29.5
Q ss_pred CCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHH
Q 013432 190 PKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 236 (443)
Q Consensus 190 sk~Gs~~aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa 236 (443)
+.++. .|.++.||++...+.+++++...+ + +..|||-
T Consensus 4 ~~~~~--~~~y~iLgv~~~as~~eIk~ayr~-------l-~~~~HPD 40 (92)
T 2dmx_A 4 GSSGM--ANYYEVLGVQASASPEDIKKAYRK-------L-ALRWHPD 40 (92)
T ss_dssp CCCCC--CCHHHHHTCCTTCCTTHHHHHHHH-------H-HHHTCTT
T ss_pred CCCCC--cCHHHHcCCCCCCCHHHHHHHHHH-------H-HHHHCCC
Confidence 33444 689999999999999999999988 2 4567875
No 69
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.07 E-value=30 Score=26.01 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=27.0
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHH
Q 013432 197 EQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 236 (443)
Q Consensus 197 aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa 236 (443)
.|.++.||++.+.+.+++++...+ . +..|||-
T Consensus 7 ~~~y~iLgv~~~a~~~~Ik~ayr~--l------~~~~HPD 38 (79)
T 2dn9_A 7 GDYYQILGVPRNASQKEIKKAYYQ--L------AKKYHPD 38 (79)
T ss_dssp SCHHHHHTCCTTCCHHHHHHHHHH--H------HHHTCTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHH--H------HHHHCcC
Confidence 589999999999999999999988 2 3457775
No 70
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=27.81 E-value=1.8e+02 Score=21.24 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhc
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN 120 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~K 120 (443)
++.+++.+ |..++.+|+..+|..+= .|.+|.++-.+.-.++...+-.
T Consensus 31 l~~~l~~~--g~~~~~~~~~~l~~~~d----~~~dg~i~~~eF~~~~~~~~~~ 77 (92)
T 2kn2_A 31 LRHVMINL--GEKLTDEEVEQMIKEAD----LDGDGQVNYEEFVKMMMTVRGG 77 (92)
T ss_dssp HHHHHHHT--TCCCCHHHHHHHHHHHC----SSCCSSEEHHHHHHHHHHHTTT
T ss_pred HHHHHHHh--CCCCCHHHHHHHHHHhC----CCCCCcEeHHHHHHHHHhccCC
Confidence 55555554 66788888888888773 2346778777776666655433
No 71
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.19 E-value=34 Score=25.67 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=22.6
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHh
Q 013432 197 EQMLKFMGASTNLSVLQAKELLED 220 (443)
Q Consensus 197 aDvLeaLGi~i~~s~~~~~~~Le~ 220 (443)
.|.++.||++.+.+.+++++...+
T Consensus 7 ~~~y~iLgv~~~as~~eIk~ayr~ 30 (78)
T 2ctp_A 7 GDYYEILGVSRGASDEDLKKAYRR 30 (78)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHH
Confidence 589999999999999999999988
No 72
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=25.35 E-value=2e+02 Score=29.21 Aligned_cols=159 Identities=12% Similarity=0.094 Sum_probs=83.7
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhc--------CCCH-HHHHH-HHHHHHh
Q 013432 67 RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMN--------RETD-RELKA-YCLAFDD 136 (443)
Q Consensus 67 ~l~~~L~kl~~g~~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~K--------geT~-eElag-~~~A~~~ 136 (443)
++.+.++++.....||.+...++++.|-..++ ..++...-.-.|.-.++-+ +.++ +++.. +.+.+.+
T Consensus 9 ~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll---~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~ 85 (443)
T 3dm5_A 9 ALANTLKKIARASSVDEALIKELVRDIQRALI---QADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTK 85 (443)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH---HcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHH
Confidence 47788888887788998877655554432111 4566666555555544321 2232 33322 2223333
Q ss_pred cCCC----CCCCC-CCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHHH----hCCCCC
Q 013432 137 ELGP----PPVAD-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLK----FMGAST 207 (443)
Q Consensus 137 ~~~~----~~~~~-~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvLe----aLGi~i 207 (443)
...+ .+... +.+|-++|.+|.|+.|+ +.-.|..++..|.+|+.-..+... .+. .+-|. .+|+++
T Consensus 86 ~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt---~~kLA~~l~~~G~kVllv~~D~~R--~aa--~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 86 FLGTEAKPIEIKEKPTILLMVGIQGSGKTTT---VAKLARYFQKRGYKVGVVCSDTWR--PGA--YHQLRQLLDRYHIEV 158 (443)
T ss_dssp HTTSSCCCCCCCSSSEEEEEECCTTSSHHHH---HHHHHHHHHTTTCCEEEEECCCSS--THH--HHHHHHHHGGGTCEE
T ss_pred HhcCcccccccCCCCeEEEEECcCCCCHHHH---HHHHHHHHHHCCCeEEEEeCCCcc--hhH--HHHHHHHHHhcCCcE
Confidence 2221 11111 23678899999999862 222344556789999887655322 232 34343 345542
Q ss_pred -----CCCHHHH-HHH---HHhcCceeEEeccchhcH
Q 013432 208 -----NLSVLQA-KEL---LEDEEIGFAYVSLREARP 235 (443)
Q Consensus 208 -----~~s~~~~-~~~---Le~~g~gf~fl~a~~~~P 235 (443)
..+|.++ .+. +...+.-+++++.+-.++
T Consensus 159 ~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 159 FGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHK 195 (443)
T ss_dssp ECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSS
T ss_pred EecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 2344433 233 333346677777665443
No 73
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=24.07 E-value=2e+02 Score=29.01 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHH----HhcCCcCCCCCCCCCHHHHHHHHHHHHh--cCC------CH-HHHHH-HHHH
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLR----DVLPLQVDNKAPGVSESLLSAFLIGQRM--NRE------TD-RELKA-YCLA 133 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~----~il~~~~~~~~g~~~~~qigAfL~alr~--Kge------T~-eElag-~~~A 133 (443)
+.+.++++.....||.+...++++ .++ .-.+...-.-.|+-.++- .|+ ++ +++.. +.+.
T Consensus 9 l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll-------~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
T 2xxa_A 9 LSRTLRNISGRGRLTEDNVKDTLREVRMALL-------EADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNE 81 (433)
T ss_dssp HHHHHHHSCCCSCCCHHHHHHHHHHHHHHHH-------HHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHH
Confidence 666777777667899865544444 555 566777777777777644 332 22 12211 1122
Q ss_pred ----HHhcCCCCCCC-C-CCCceEEcCCCCCCCccccchHHHHHHHhcC-CCeEEeecCCCCCCCCCCcHHHHH----Hh
Q 013432 134 ----FDDELGPPPVA-D-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCY-GESCLLHGAEWMPPKGGVTEEQML----KF 202 (443)
Q Consensus 134 ----~~~~~~~~~~~-~-~~~vD~~GtggDG~~t~nisT~l~A~vlAa~-Gv~V~kHGnr~~ssk~Gs~~aDvL----ea 202 (443)
+.....++... . +..|-++|.||.|+.|+ +.-.|..++.. |.+|+.--.+.. +.+. .+.| +.
T Consensus 82 l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~---a~~LA~~l~~~~G~kVllvd~D~~--r~~a--~~ql~~~~~~ 154 (433)
T 2xxa_A 82 LVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTS---VGKLGKFLREKHKKKVLVVSADVY--RPAA--IKQLETLAEQ 154 (433)
T ss_dssp HHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHH---HHHHHHHHHHTSCCCEEEEECCCS--STTH--HHHHHHHHHH
T ss_pred HHHHhccccccccccCCCCeEEEEECCCCCCHHHH---HHHHHHHHHHhcCCeEEEEecCCC--CccH--HHHHHhhccc
Confidence 22111122221 1 22567789999998862 22244455666 999998665532 2233 4443 23
Q ss_pred CCCCCC-----CCHHHH-HHHHHh---cCceeEEeccchh
Q 013432 203 MGASTN-----LSVLQA-KELLED---EEIGFAYVSLREA 233 (443)
Q Consensus 203 LGi~i~-----~s~~~~-~~~Le~---~g~gf~fl~a~~~ 233 (443)
.|+++- .+|.++ .+.++. .++-+++++.|-.
T Consensus 155 ~~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 155 VGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HTCEECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCC
T ss_pred CCeeEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 455422 345554 344432 3466788877643
No 74
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=23.35 E-value=39 Score=34.77 Aligned_cols=86 Identities=13% Similarity=0.002 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC-CCCCceEEcCCCCCCCcc-----c--cchHHHHHHHhcCC-CeEEeecCCCCC----
Q 013432 123 TDRELKAYCLAFDDELGPPPVA-DVKSLTHYGEPYDGNTRF-----F--RSTLFVAAVRSCYG-ESCLLHGAEWMP---- 189 (443)
Q Consensus 123 T~eElag~~~A~~~~~~~~~~~-~~~~vD~~GtggDG~~t~-----n--isT~l~A~vlAa~G-v~V~kHGnr~~s---- 189 (443)
..+++...+++++.....+... +...+.+.|.|..+...- + -+..|...++|.+| ..|...|+.++.
T Consensus 58 ~s~D~~~~~~~l~~lG~~i~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~ts~~~l~~l~a~~~~~~~~l~G~~~l~~~~~ 137 (479)
T 4fqd_A 58 DIVETAVLGEIFRAAGAHAHYDGADETFTVDASAWDRAELPADLVGRIHGSLYLLPALVSRNGVARLSASGGCPIGEGPR 137 (479)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEETTTTEEEEECTTCCCSCCCHHHHTTCSGGGGGHHHHHHHTSEEEECC-----------
T ss_pred CchhHHHHHHHHHHcCCEEEEecCCCEEEEECCCCCCCCCChhHhcccchhHHHHHHHHhcCCCeEEEEeCCcccccCCC
Confidence 4688889999999877665431 223456666654432110 0 01124566677777 478889998876
Q ss_pred CCCCCcHHHHHHhCCCCCC
Q 013432 190 PKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 190 sk~Gs~~aDvLeaLGi~i~ 208 (443)
.+-=..+.|.|++||+.+.
T Consensus 138 ~RPi~~~~~~L~~lGa~i~ 156 (479)
T 4fqd_A 138 GRPDEHLLDVMGRFGVTTR 156 (479)
T ss_dssp -CCCHHHHHHHHTTTCEEE
T ss_pred CCChHHHHHHHHHCCCEEE
Confidence 3332335788888998875
No 75
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=22.93 E-value=74 Score=23.47 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=28.4
Q ss_pred cHHHHHHhCCCCC-CCCHHHHHHHHHhcCceeEEeccchhcHH
Q 013432 195 TEEQMLKFMGAST-NLSVLQAKELLEDEEIGFAYVSLREARPS 236 (443)
Q Consensus 195 ~~aDvLeaLGi~i-~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa 236 (443)
+..|.++.||++. +.+.+++.+...+ + +..|||-
T Consensus 12 ~~~~~y~iLgl~~~~a~~~eIk~ayr~-------l-~~~~HPD 46 (71)
T 2guz_A 12 NSKEALQILNLTENTLTKKKLKEVHRK-------I-MLANHPD 46 (71)
T ss_dssp CHHHHHHHTTCCTTTCCHHHHHHHHHH-------H-HHHHCGG
T ss_pred CHHHHHHHcCCCCCCCCHHHHHHHHHH-------H-HHHHCCC
Confidence 3479999999998 7999999999988 2 4568886
No 76
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=22.59 E-value=4.5e+02 Score=26.31 Aligned_cols=151 Identities=19% Similarity=0.151 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHH----HhcCCcCCCCCCCCCHHHHHHHHHHHHh--cC------CCHH-HHHHHH-HH
Q 013432 68 LVGALREVLAGGHLGYEEVQGVLR----DVLPLQVDNKAPGVSESLLSAFLIGQRM--NR------ETDR-ELKAYC-LA 133 (443)
Q Consensus 68 l~~~L~kl~~g~~Lt~eEa~~~~~----~il~~~~~~~~g~~~~~qigAfL~alr~--Kg------eT~e-Elag~~-~A 133 (443)
+.+.++++.....||.+...++++ .++ .-++...-.-.|.-.++- +| .++. ++...+ +.
T Consensus 9 l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll-------~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (425)
T 2ffh_A 9 LQEAIGRLRGRGRITEEDLKATLREIRRALM-------DADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEA 81 (425)
T ss_dssp HHHHHHTTTTCCSCCHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHH
Confidence 667777777667899765554444 445 567777777777766643 23 3443 333222 12
Q ss_pred HHhcC----CCCCCCCCCCceEEcCCCCCCCccccchHHHHHHHhcCCCeEEeecCCCCCCCCCCcHHHHH----HhCCC
Q 013432 134 FDDEL----GPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQML----KFMGA 205 (443)
Q Consensus 134 ~~~~~----~~~~~~~~~~vD~~GtggDG~~t~nisT~l~A~vlAa~Gv~V~kHGnr~~ssk~Gs~~aDvL----eaLGi 205 (443)
+.... .++.+..+..+-++|.+|.|+.|+-. ..|..++..|.+|..-+.+-.. .+. .+.| +..|+
T Consensus 82 L~~~~~~~~~~i~l~~~~vi~i~G~~GsGKTT~~~---~LA~~l~~~g~~Vllvd~D~~r--~aa--~~qL~~~~~~~gv 154 (425)
T 2ffh_A 82 LKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAA---KLALYYKGKGRRPLLVAADTQR--PAA--REQLRLLGEKVGV 154 (425)
T ss_dssp HHHHTTSSCCCCCCCSSEEEEEECCTTSSHHHHHH---HHHHHHHTTTCCEEEEECCSSC--HHH--HHHHHHHHHHHTC
T ss_pred HHHHhCCCcccccCCCCeEEEEECCCCCCHHHHHH---HHHHHHHHcCCeEEEeeccccC--chh--HHHHHHhcccCCc
Confidence 22211 12222222356778999999886322 3455566779999988765422 122 2333 33555
Q ss_pred CC-----CCCHHHH-HHHHHh---cCceeEEeccch
Q 013432 206 ST-----NLSVLQA-KELLED---EEIGFAYVSLRE 232 (443)
Q Consensus 206 ~i-----~~s~~~~-~~~Le~---~g~gf~fl~a~~ 232 (443)
++ ..+|.++ .+.++. .++-+++++.|-
T Consensus 155 ~v~~~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG 190 (425)
T 2ffh_A 155 PVLEVMDGESPESIRRRVEEKARLEARDLILVDTAG 190 (425)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred cEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 42 2345544 334443 345566676543
No 77
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=22.32 E-value=76 Score=32.02 Aligned_cols=100 Identities=12% Similarity=0.032 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCC-------CHHHHHHHHHHHHhcCCCCCCCCCCCceEEcCCCCCCC----ccc---cchH--HHHHH
Q 013432 109 LLSAFLIGQRMNRE-------TDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNT----RFF---RSTL--FVAAV 172 (443)
Q Consensus 109 qigAfL~alr~Kge-------T~eElag~~~A~~~~~~~~~~~~~~~vD~~GtggDG~~----t~n---isT~--l~A~v 172 (443)
+.-+++.|.-.+|+ ..+++...+++|+.....+...+ ..+-+.|.+..+.. ..+ --|. |.+.+
T Consensus 26 t~r~ll~A~La~g~t~i~n~~~~~dv~~~~~~L~~lG~~i~~~~-~~~~I~g~~~~~~~~p~~~~d~~~sgt~~r~l~~~ 104 (445)
T 2pqc_A 26 SHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEG-DTWIIDGVGNGGLLAPEAPLDFGNAATGCRLTMGL 104 (445)
T ss_dssp HHHHHHHHHHSEEEEEEESCCCSHHHHHHHHHHHHTTCEEEEET-TEEEEEEECTTCCCCCSSCEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEccCCCCHHHHHHHHHHHHCCCEEEecC-CEEEEEccCCCCCCCCCcccchhhhhHHHHHHHHH
Confidence 33555556556653 34889999999998776554221 12333343311111 111 1122 45555
Q ss_pred HhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCC
Q 013432 173 RSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 209 (443)
Q Consensus 173 lAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~~ 209 (443)
++..+.+|...|...+..+-=..+.|.|+++|+++..
T Consensus 105 l~~~~~~v~l~G~~~l~~Rp~~~~l~~L~~~Ga~i~~ 141 (445)
T 2pqc_A 105 VGVYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKS 141 (445)
T ss_dssp HHTSSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEE
T ss_pred HhcCCcEEEEECCccCCCCChHHHHHHHHHCCCEEEe
Confidence 5666789999999887776655568999999988753
No 78
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=22.30 E-value=1.5e+02 Score=23.29 Aligned_cols=38 Identities=8% Similarity=0.206 Sum_probs=33.9
Q ss_pred CCeEEEeecCCCchHHHHHHHHHcCCceEEEEecCCCcc
Q 013432 268 REAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGAL 306 (443)
Q Consensus 268 ~~~~v~GV~h~~~~~~~a~~l~~lG~~~alVv~G~eG~~ 306 (443)
.++...|=|.+...+-+..+|..+|.+.-+++++ ||+.
T Consensus 19 ~n~V~TGgfg~~~v~ev~~am~~~g~~gkii~~~-dGl~ 56 (85)
T 2l48_A 19 QNIIQSGAFSPYETPDVMGALTSLKMTADFILQS-DGLT 56 (85)
T ss_dssp CCCEEECCBCTTTHHHHHHHHHHTTCCEEEEECT-TSCE
T ss_pred ceEEEecccCHHHHHHHHHHHHHcCceEEEEECC-CceE
Confidence 3678999999999999999999999988888888 6874
No 79
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=22.00 E-value=63 Score=26.21 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=20.9
Q ss_pred HHHHHHHHh--cCCCCCHHHHHHHHHHhcC-CcCCCCCCCCCHHHHHHHHHH
Q 013432 68 LVGALREVL--AGGHLGYEEVQGVLRDVLP-LQVDNKAPGVSESLLSAFLIG 116 (443)
Q Consensus 68 l~~~L~kl~--~g~~Lt~eEa~~~~~~il~-~~~~~~~g~~~~~qigAfL~a 116 (443)
+.+|...-. +|-.++++||++++--+-- .--.+...++||.|+++|-..
T Consensus 48 LskWy~~aA~e~G~~~~~d~ARE~vYGMpy~eWKa~~Q~eAt~eQ~aaf~~~ 99 (105)
T 2o35_A 48 LSNWYREAAEASGVPMSKEESREIVYGMPYEEWRTQNQGEASPEQKAAFERN 99 (105)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHSSCHHHHTC-----------------
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHhCCCHHHHHHHHCCCCCHHHHHHHHHh
Confidence 667776654 4889999999999865420 000011457899999999443
No 80
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=21.09 E-value=1.1e+02 Score=30.96 Aligned_cols=99 Identities=14% Similarity=0.055 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCC-------CHHHHHHHHHHHHhcCCCCCCCCCC-CceEEcCCCC--CCC--cccc----chH-HHHHH
Q 013432 110 LSAFLIGQRMNRE-------TDRELKAYCLAFDDELGPPPVADVK-SLTHYGEPYD--GNT--RFFR----STL-FVAAV 172 (443)
Q Consensus 110 igAfL~alr~Kge-------T~eElag~~~A~~~~~~~~~~~~~~-~vD~~GtggD--G~~--t~ni----sT~-l~A~v 172 (443)
.-+++.+.-.+|+ ..+.+..+++++++....+...+.. .+-+-|.|+. ... .+++ +++ |...+
T Consensus 50 ~r~l~~aaLa~g~s~i~n~~~~~D~~~~~~~L~~lG~~i~~~~~~~~~~i~g~~~~~~~~~~~~l~~g~sgt~~R~l~~~ 129 (450)
T 3nvs_A 50 NRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGLGQAFHTTQPLELFLGNAGTAMRPLAAA 129 (450)
T ss_dssp HHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSSCEEEECCSSCCBCSSCEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEEcCCccEEEEeCCCCCcCCCCCceEEccCccchHHHHHHH
Confidence 3444444445663 3567889999999877665432221 3455555421 111 1222 223 45556
Q ss_pred HhcCCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCC
Q 013432 173 RSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTN 208 (443)
Q Consensus 173 lAa~Gv~V~kHGnr~~ssk~Gs~~aDvLeaLGi~i~ 208 (443)
+|..+.++...|...+.++-=..+.|.|++||+++.
T Consensus 130 la~~~~~~~l~G~~~l~~RPi~~~l~~L~~lGa~i~ 165 (450)
T 3nvs_A 130 LCLGQGDYVLTGEPRMKERPIGHLVDALRQAGAQIE 165 (450)
T ss_dssp TTSSBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEE
T ss_pred HhcCCcEEEEeCCcccccCCHHHHHHHHHHCCCEEE
Confidence 666678999999987766533334788999999875
No 81
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=21.05 E-value=1.2e+02 Score=27.36 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHhcCCcCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 013432 68 LVGALREVLAGG---HLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDE 137 (443)
Q Consensus 68 l~~~L~kl~~g~---~Lt~eEa~~~~~~il~~~~~~~~g~~~~~qigAfL~alr~KgeT~eElag~~~A~~~~ 137 (443)
..+.+..+..++ .=+.+..+.+++.++ ...++-..++.+.++-.+|.-|+++-..|++++++.
T Consensus 39 ~~~vl~~lk~~~~~~~~~~~~~~~~v~~~l-------~p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~ 104 (211)
T 2qgu_A 39 VDDVLATIKGDPDLRGGNLQKVFQLVDQKI-------VPRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSL 104 (211)
T ss_dssp HHHHHHHHHTCHHHHTTCHHHHHHHHHHHT-------GGGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccccCHHHHHHHHHHHh-------hhhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHH
Confidence 444555555543 346788889999998 788899999999999999999999999999999875
No 82
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.91 E-value=50 Score=25.44 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHhcCceeEEeccchhcHH
Q 013432 197 EQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPS 236 (443)
Q Consensus 197 aDvLeaLGi~i~~s~~~~~~~Le~~g~gf~fl~a~~~~Pa 236 (443)
.|.++.||++...+.+++++...+ . +..|||-
T Consensus 7 ~~~y~iLgv~~~as~~eIk~ayr~--l------~~~~HPD 38 (88)
T 2ctr_A 7 GSYYDILGVPKSASERQIKKAFHK--L------AMKYHPD 38 (88)
T ss_dssp CSHHHHHTCCTTCCHHHHHHHHHH--H------HHHTCTT
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHH--H------HHHHCcC
Confidence 589999999999999999999988 2 4567775
Done!