BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013433
         (443 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZXC|A Chain A, Seramidase Complexed With C2
 pdb|2ZXC|B Chain B, Seramidase Complexed With C2
 pdb|2ZWS|A Chain A, Crystal Structure Analysis Of Neutral Ceramidase From
           Pseudomonas Aeruginosa
          Length = 646

 Score =  184 bits (468), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 98/232 (42%), Positives = 143/232 (61%), Gaps = 13/232 (5%)

Query: 1   MMGYANMEQIASGIHFRLRARTFIVAEP-QGNRVVFVNLDACMASQIVKIKVIERLKARY 59
           MMGY+++EQ  +GIH R  AR F++ E   G R+V+VN D  M  Q V +KV+ RLKA+Y
Sbjct: 23  MMGYSSLEQKTAGIHMRQWARAFVIEEAASGRRLVYVNTDLGMIFQAVHLKVLARLKAKY 82

Query: 60  GDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLR 119
             +Y E NV ++  HTH+GPGG+  Y +Y ++ LGF  ++F+A+VDGI +S+ +A   L+
Sbjct: 83  PGVYDENNVMLAATHTHSGPGGFSHYAMYNLSVLGFQEKTFNAIVDGIVRSIERAQARLQ 142

Query: 120 PGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTLLKFVDDQWGPVGSFNW 179
           PG +F   GEL +AS +RS  ++L NP  +   Y+  +D +M++L FVD      G+ +W
Sbjct: 143 PGRLFYGSGELRNASRNRSLLSHLKNP--DIAGYEDGIDPQMSVLSFVDANGELAGAISW 200

Query: 180 FATHGTSMSRTNSLISGDNKGAAARFMED----------WFEQSNAGHSSAD 221
           F  H TSM+  N LIS DNKG A+   E            F Q+NAG+ S +
Sbjct: 201 FPVHSTSMTNANHLISPDNKGYASYHWEHDVSRKSGFVAAFAQTNAGNLSPN 252



 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 24/102 (23%)

Query: 278 AEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFE 337
           + K GFV+AF Q+N G++SPN+                        +  G GP + +EF+
Sbjct: 232 SRKSGFVAAFAQTNAGNLSPNL-----------------------NLKPGSGP-FDNEFD 267

Query: 338 STRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEV 379
           +TR IG RQF KA ++  +A E++ G++D R  ++DF++L +
Sbjct: 268 NTREIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDFTRLPI 309


>pdb|3BAL|A Chain A, Crystal Structure Of An Acetylacetone Dioxygenase From
           Acinetobacter Johnsonii
 pdb|3BAL|B Chain B, Crystal Structure Of An Acetylacetone Dioxygenase From
           Acinetobacter Johnsonii
 pdb|3BAL|C Chain C, Crystal Structure Of An Acetylacetone Dioxygenase From
           Acinetobacter Johnsonii
 pdb|3BAL|D Chain D, Crystal Structure Of An Acetylacetone Dioxygenase From
           Acinetobacter Johnsonii
          Length = 153

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 12/105 (11%)

Query: 99  SFDALVDGIEKSVLQAHENLRPGSIFVNKGELL-------DASISRSPSAYLNNPASERG 151
           S+ A+ +    S   +H +  PG  F+ KG++          S + +PS    +  +  G
Sbjct: 46  SWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVRGGEQEGGSTAYAPSYGFESSGALHG 105

Query: 152 KYKYNVDKEMTL-----LKFVDDQWGPVGSFNWFATHGTSMSRTN 191
           K  + V+ +  +     L F+DD    + S  W    G  ++  N
Sbjct: 106 KTFFPVESQFYMTFLGPLNFIDDNGKVIASIGWAEAQGAWLATKN 150


>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
           Plasmodium Falciparum, Pf10_0150
          Length = 368

 Score = 29.3 bits (64), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 87  VYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISR 137
            Y V  +  V +    LV+    S+++A +  +PG  + N G L+DA +S+
Sbjct: 208 TYFVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSK 258


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,098,395
Number of Sequences: 62578
Number of extensions: 540999
Number of successful extensions: 1174
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 6
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)