Query 013433
Match_columns 443
No_of_seqs 201 out of 525
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 10:29:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013433.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013433hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yx0a1 d.108.1.1 (A:1-151) Hy 41.6 18 0.0013 29.2 5.6 52 158-210 43-96 (151)
2 d1ko3a_ d.157.1.1 (A:) Zn meta 40.9 15 0.0011 30.7 5.0 48 21-77 39-86 (230)
3 d1x8ha_ d.157.1.1 (A:) Zn meta 34.3 20 0.0014 30.0 4.8 48 21-77 24-71 (228)
4 d1ywxa1 d.12.1.3 (A:1-102) Rib 27.9 28 0.0021 27.0 4.2 32 47-80 31-62 (102)
5 d1mqoa_ d.157.1.1 (A:) Zn meta 27.1 74 0.0054 26.3 7.3 49 20-77 35-83 (221)
6 d2aioa1 d.157.1.1 (A:23-311) Z 25.6 37 0.0027 29.1 5.1 48 21-77 38-86 (266)
7 d1mwwa_ d.80.1.4 (A:) Hypothet 25.4 42 0.0031 25.7 5.0 45 29-75 55-104 (120)
8 d1xn9a_ d.12.1.3 (A:) Ribosoma 24.8 35 0.0025 26.4 4.2 32 47-80 31-62 (101)
9 d1lf7a_ b.60.1.1 (A:) Compleme 23.7 84 0.0061 24.4 6.7 48 30-80 115-162 (171)
10 d2v94a1 d.12.1.3 (A:1-93) Ribo 22.9 39 0.0028 25.7 4.0 44 35-80 20-63 (93)
11 d2gmna1 d.157.1.1 (A:29-292) Z 22.7 46 0.0033 28.4 5.1 48 21-77 28-76 (264)
12 d1axha_ g.3.6.2 (A:) Atracotox 20.8 20 0.0014 22.7 1.5 20 302-321 2-21 (37)
13 d1hfoa_ d.80.1.3 (A:) Micropha 20.7 59 0.0043 24.8 4.9 42 29-72 52-98 (113)
No 1
>d1yx0a1 d.108.1.1 (A:1-151) Hypothetical protein YsnE {Bacillus subtilis [TaxId: 1423]}
Probab=41.59 E-value=18 Score=29.24 Aligned_cols=52 Identities=13% Similarity=0.041 Sum_probs=40.0
Q ss_pred CCeeEEEEEEeCCCCcEEEEEeeeecccccCCCCccccCCh--HHHHHHHHHHHH
Q 013433 158 DKEMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDN--KGAAARFMEDWF 210 (443)
Q Consensus 158 D~~m~vL~f~~~dG~~ig~L~~fA~HpTsl~~~N~lIS~D~--~G~As~~lE~~~ 210 (443)
+|+..++-+++ +|+++|.+.+.-.......-....|.++| +|+++.+++...
T Consensus 43 ~~~~~~~va~~-~~~~vG~~~~~~~~~~~~~i~~~~V~p~~Rg~Glg~~Ll~~~~ 96 (151)
T d1yx0a1 43 GPEITFWSAWE-GDELAGCGALKELDTRHGEIKSMRTSASHLRKGVAKQVLQHII 96 (151)
T ss_dssp SSSCEEEEEEC-SSSEEEEEEEEEEETTEEECCCCCCSTTTCCSCHHHHHHHHHH
T ss_pred CCCeEEEEEEE-CCEEEEEEEEEeccCceEEEEeeeeCHHHHhCChhHHHHHHHH
Confidence 45666666665 69999998877666666666678899997 899999998764
No 2
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]}
Probab=40.85 E-value=15 Score=30.69 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=31.0
Q ss_pred EEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 013433 21 RTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (443)
Q Consensus 21 RAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHS 77 (443)
-+++|+++ +. .|-+|.++ .....+.+++.|.+..| .+.. .|-.||.|.
T Consensus 39 N~~li~~~--~~--~vLID~g~-~~~~~~~~~~~i~~~~~--~~i~--~ii~TH~H~ 86 (230)
T d1ko3a_ 39 NGLIVRDG--DE--LLLIDTAW-GAKNTAALLAEIEKQIG--LPVT--RAVSTHFHD 86 (230)
T ss_dssp EEEEEEET--TE--EEEESCCS-SHHHHHHHHHHHHTTTC--CCEE--EEECSSSSH
T ss_pred EEEEEEeC--CE--EEEECCCC-CHHHHHHHHHHHHHhcC--CeeE--EEEECCCCc
Confidence 56777663 44 44567664 45667788888888777 4444 444799984
No 3
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]}
Probab=34.30 E-value=20 Score=30.03 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 013433 21 RTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (443)
Q Consensus 21 RAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHS 77 (443)
.++++.. ++.+++ +|... .....+++++.|++..+ -+.. .|-.||.|.
T Consensus 24 N~~~i~~--~~g~vl--ID~g~-~~~~~~~l~~~i~~~~~--~~i~--~ii~TH~H~ 71 (228)
T d1x8ha_ 24 NSMVYFG--AKGVTV--VGATW-TPDTARELHKLIKRVSR--KPVL--EVINTNYHT 71 (228)
T ss_dssp EEEEEEC--SSCEEE--ESCCS-SHHHHHHHHHHHHTTCC--SCEE--EEECSSSSH
T ss_pred eEEEEEE--CCEEEE--EeCCC-CHHHHHHHHHHHHHhcC--CCce--EEEECCCCc
Confidence 4566654 344444 58764 56667888888877444 2222 344588886
No 4
>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]}
Probab=27.87 E-value=28 Score=26.96 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 013433 47 VKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (443)
Q Consensus 47 v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSgPg 80 (443)
-+.+|+++|++.++ .+.+.|+|-.-.||-|-+
T Consensus 31 sr~ei~~kla~~~~--~~~~~vvv~~~~t~fG~~ 62 (102)
T d1ywxa1 31 SIKDVKMKLVAVLN--ANKQVLVVDTLDQIFGKL 62 (102)
T ss_dssp CHHHHHHHHHHHHT--SCSTTEEEEEEEECSSSS
T ss_pred CHHHHHHHHHHHHC--cCcCEEEEEcCEecCCCC
Confidence 47799999999999 899999999999999986
No 5
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]}
Probab=27.07 E-value=74 Score=26.32 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=33.1
Q ss_pred EEEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 013433 20 ARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (443)
Q Consensus 20 ARAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHS 77 (443)
+-+++|..+ +.+ |-+|.. +.....+++++.|++.++ -+. -.|-.||.|.
T Consensus 35 ~N~~li~~~--~~~--iLIDt~-~~~~~~~~l~~~i~~~~~--~pi--~~vi~TH~H~ 83 (221)
T d1mqoa_ 35 SNGLVLNTS--KGL--VLVDSS-WDDKLTKELIEMVEKKFQ--KRV--TDVIITHAHA 83 (221)
T ss_dssp EEEEEEEET--TEE--EEESCC-SSHHHHHHHHHHHHHHHT--SCE--EEEECCCCSH
T ss_pred cEEEEEEEC--CEE--EEEeCC-CCHHHHHHHHHHHHHhcC--CCc--eEEEECCCCc
Confidence 566777663 444 456764 556778889999999877 332 3466788885
No 6
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]}
Probab=25.61 E-value=37 Score=29.05 Aligned_cols=48 Identities=29% Similarity=0.486 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcE-EEEeeccCC
Q 013433 21 RTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNV-AISGIHTHA 77 (443)
Q Consensus 21 RAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nV-lIsATHTHS 77 (443)
-+++|+.+ +..++ +|.+. ....+.+++.|++ .| ++...| .|--||.|.
T Consensus 38 ~~yli~~~--~g~vL--IDtG~--~~~~~~~~~~l~~-~G--~~~~~I~~Ii~TH~H~ 86 (266)
T d2aioa1 38 TALLVQTP--DGAVL--LDGGM--PQMASHLLDNMKA-RG--VTPRDLRLILLSHAHA 86 (266)
T ss_dssp CCEEEEET--TEEEE--ECCBS--GGGHHHHHHHHHH-TT--CCGGGEEEEECSCCSH
T ss_pred EEEEEEeC--CEEEE--EeCCC--chhhHHHHHHHHH-cC--CChHHeEEEEecCCCc
Confidence 57777764 44544 48653 2346778888877 56 666666 345599886
No 7
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]}
Probab=25.37 E-value=42 Score=25.73 Aligned_cols=45 Identities=9% Similarity=0.171 Sum_probs=33.4
Q ss_pred CCCEEEEEEeccCc-ccH----HHHHHHHHHHHHHhCCCCCCCcEEEEeecc
Q 013433 29 QGNRVVFVNLDACM-ASQ----IVKIKVIERLKARYGDLYTEKNVAISGIHT 75 (443)
Q Consensus 29 ~~~rvv~Vs~Dl~~-i~~----~v~~~V~~~L~~~~G~~i~~~nVlIsATHT 75 (443)
....+++|.+++.. -+. .+...+.+.|.+.+| ++.++|.|.-+=+
T Consensus 55 rs~~~~~I~i~~~~grs~eqK~~l~~~lt~~l~~~lg--i~~~~v~I~i~e~ 104 (120)
T d1mwwa_ 55 RSDDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLG--IRAHDVEITIKEQ 104 (120)
T ss_dssp SCTTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEEEEE
T ss_pred CCCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhC--cCcCeEEEEEEEC
Confidence 35678999999775 453 455666677777899 9999999976644
No 8
>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]}
Probab=24.81 E-value=35 Score=26.38 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 013433 47 VKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (443)
Q Consensus 47 v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSgPg 80 (443)
-+.+|+++|++.+| .+.+.|+|-.-.||-|-+
T Consensus 31 sr~ei~~kla~~~~--~~~~~vvv~~~~t~fG~~ 62 (101)
T d1xn9a_ 31 SRNDVRNKLAAMLN--APLELLVIQRIKTEYGMQ 62 (101)
T ss_dssp CHHHHHHHHHHHTT--CCTTTEEEEEEEECSSSS
T ss_pred CHHHHHHHHHHhHC--cCcCEEEEEcCcccCCCc
Confidence 47789999999999 899999999999999986
No 9
>d1lf7a_ b.60.1.1 (A:) Complement protein C8gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.69 E-value=84 Score=24.43 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=38.0
Q ss_pred CCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 013433 30 GNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (443)
Q Consensus 30 ~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSgPg 80 (443)
..+.+++-.--.-+++++.+++++.+++ .| |+.++|++.-..-.+-|+
T Consensus 115 ~~~~~~llsR~p~~~~~~~~~f~~~~~~-~G--~~~~~i~~~~~~~~C~~~ 162 (171)
T d1lf7a_ 115 GQLSVKLYARSLPVSDSVLSGFEQRVQE-AH--LTEDQIFYFPKYGFCEAA 162 (171)
T ss_dssp TEEEEEEEESSSSCCHHHHHHHHHHHHH-TT--CCGGGEEECCSSCCCCCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHHHHH-cC--CCHHHEEECCCCCccCCc
Confidence 6677888888888899999998887765 79 999999998654455554
No 10
>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]}
Probab=22.89 E-value=39 Score=25.67 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=34.1
Q ss_pred EEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 013433 35 FVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (443)
Q Consensus 35 ~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSgPg 80 (443)
.+.+.-.+-+.--+.+|++.|++.++ .+.+.|+|-.-.||-|-+
T Consensus 20 ~~~v~h~g~~Tpsr~ei~~kla~~~~--~~~~~vvv~~~~t~fG~~ 63 (93)
T d2v94a1 20 YFEIYHPGEPTPSRKDVKGKLVAMLD--LNPETTVIQYIRSYFGSY 63 (93)
T ss_dssp EEEEECTTSCCCCHHHHHHHHHHHHT--CCGGGEEEEEEECCTTCS
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHC--CCCCEEEEEeCccCCCCc
Confidence 33344444333347799999999999 899999999999999886
No 11
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]}
Probab=22.67 E-value=46 Score=28.45 Aligned_cols=48 Identities=13% Similarity=0.380 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcE-EEEeeccCC
Q 013433 21 RTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNV-AISGIHTHA 77 (443)
Q Consensus 21 RAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nV-lIsATHTHS 77 (443)
-+++|..+ +.+++ +|.+. . .....+++.|++ .| ++...| .|-.||.|.
T Consensus 28 n~~lI~~~--~~~vL--IDtG~-~-~~~~~~~~~i~~-~~--~~~~~I~~ii~TH~H~ 76 (264)
T d2gmna1 28 AVYVIKTS--QGLIL--MDTAM-P-QSTGMIKDNIAK-LG--FKVADIKLILNTHAHL 76 (264)
T ss_dssp CCEEEEET--TEEEE--ECCCC-G-GGHHHHHHHHHH-TT--CCGGGEEEEECSCCSH
T ss_pred EEEEEEEC--CEEEE--EcCCC-c-chHHHHHHHHHH-cC--CCchheEEEEECCCCc
Confidence 45667663 44444 68765 2 346678888876 56 666666 677899984
No 12
>d1axha_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=20.79 E-value=20 Score=22.66 Aligned_cols=20 Identities=40% Similarity=0.986 Sum_probs=16.6
Q ss_pred ccccCCCCCCCCCCCccCCC
Q 013433 302 AFCIDSGLPCDFNHSTCGGK 321 (443)
Q Consensus 302 ~~c~d~g~~c~~~~s~c~g~ 321 (443)
+-|+-+|.||-++.+-|.|.
T Consensus 2 ~~cipsgqpcpyne~ccsgs 21 (37)
T d1axha_ 2 PTCIPSGQPCPYNENCCSQS 21 (37)
T ss_dssp CCSBCTTSBCSSGGGBSSSC
T ss_pred CccccCCCcCCCcccccccc
Confidence 45889999999999988763
No 13
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]}
Probab=20.69 E-value=59 Score=24.76 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=32.4
Q ss_pred CCCEEEEEEeccCc-ccHH----HHHHHHHHHHHHhCCCCCCCcEEEEe
Q 013433 29 QGNRVVFVNLDACM-ASQI----VKIKVIERLKARYGDLYTEKNVAISG 72 (443)
Q Consensus 29 ~~~rvv~Vs~Dl~~-i~~~----v~~~V~~~L~~~~G~~i~~~nVlIsA 72 (443)
.....+||.+=.++ +.++ +...+-+.|++++| |+.++|.|.-
T Consensus 52 s~eP~a~~~l~sig~l~~~~n~~~s~~i~~~l~~~Lg--I~~~RiyI~f 98 (113)
T d1hfoa_ 52 STNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLG--IPKNRMYIHF 98 (113)
T ss_dssp BCSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEE
T ss_pred CCCcEEEEEEEEecCCChHHhHHHHHHHHHHHHHHcC--CCcceEEEEE
Confidence 45778888887664 6665 45667777888999 9999999964
Done!