BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013435
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 149/373 (39%), Gaps = 45/373 (12%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF 97
V++G G SGL+ L G+ +IL+ WQ + L L P + +P P
Sbjct: 7 VVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ-HAWHSLHLFSPAGWSSIPGWPM 65
Query: 98 PSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETV 157
P++ YP + + L YL Y + L PV V H RV + G +
Sbjct: 66 PASQGPYPARAEVLAYLAQYEQKYAL-PVLRPIRVQ-RVSHFGERLRVVARDGRQ----- 118
Query: 158 YLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEV 217
+L + +I ATG E P +G++ F G HS+ Y T F V ++G GNSG ++
Sbjct: 119 WLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQI 178
Query: 218 SLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLG 277
++ A + + + L ++ GR F +W
Sbjct: 179 LAEVSTV-AETTWITQHEPAFLADDVDGRVLF--ERATERW------------------- 216
Query: 278 DTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRAIKRLTHHAAEFIDGS 337
Q G P L P ++ PVLD A+ R G + R + ++ DG+
Sbjct: 217 KAQQEGR-EPDLPPGGFGDIVMVPPVLD----ARAR-GVLAAVPPPARFSPTGMQWADGT 270
Query: 338 IENYDAIILATGYKSNVPYWLKDTEMFS-------EKDGFPRMEFPNGWKGAHGLYAVGF 390
+DA+I TG++ + + LK ++ + + G + P+ W +G + G
Sbjct: 271 ERAFDAVIWCTGFRPALSH-LKGLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGDWN-GM 328
Query: 391 NKRGLLGASIDAR 403
L+G + AR
Sbjct: 329 ASATLIGVTRYAR 341
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 24/196 (12%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQ----FCQLP 93
V++GAG +G+ A + + G+ L +E + W Y RL F
Sbjct: 13 VVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKG 72
Query: 94 LMP---FPSNFPTYPTKQQFLTYLETYTNHFGLDP--VFNTTVVNAEYDHLSRLWRVKTQ 148
++P + NF + P + L Y+ + + FNT V A Y RLW V
Sbjct: 73 IIPEWEWSENFASQP---EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVT-- 127
Query: 149 QGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKT-------GELFR 201
L EE V C++LI ATG + +P I+G+D F+G FHSS + T G F
Sbjct: 128 --LDNEEVV-TCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFT 184
Query: 202 DKNVLVVGCGNSGMEV 217
K V V+G G +G+++
Sbjct: 185 GKRVGVIGTGATGVQI 200
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 26/193 (13%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF 97
V+VGAG +GL +G+ E A+ + +W Y P C + + +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 98 PSNFP-----------TYPTKQQFLTYLETYTNHFGL--DPVFNTTVVNAEYDHLSRLWR 144
+F Y T+ + L YLE + F L D F+T V +A D W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 145 VKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSY-KTGELFRDK 203
V+T +G + ++L+VA G + P +G+D F G I H++ + G F K
Sbjct: 138 VRTDRGDEVS-----ARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGK 192
Query: 204 NVLVVGCGNSGME 216
V V+G G+SG++
Sbjct: 193 RVGVIGTGSSGIQ 205
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 26/193 (13%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF 97
V+VGAG +GL +G+ E A+ + +W Y P C + + +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 98 PSNFP-----------TYPTKQQFLTYLETYTNHFGL--DPVFNTTVVNAEYDHLSRLWR 144
+F Y T+ + L YLE + F L D F+T V +A D W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 145 VKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSY-KTGELFRDK 203
V+T +G + ++L+VA G + P +G+D F G I H++ + G F K
Sbjct: 138 VRTDRGDEVS-----ARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGK 192
Query: 204 NVLVVGCGNSGME 216
V V+G G+SG++
Sbjct: 193 RVGVIGTGSSGIQ 205
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 26/193 (13%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF 97
V+VGAG +GL +G+ E A+ + +W Y P C + + +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 98 PSNFP-----------TYPTKQQFLTYLETYTNHFGL--DPVFNTTVVNAEYDHLSRLWR 144
+F Y T+ + L YLE + F L D F+T V +A D W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 145 VKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSY-KTGELFRDK 203
V+T +G + ++L+VA G + P +G+D F G I H++ + G F K
Sbjct: 138 VRTDRGDEVS-----ARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGK 192
Query: 204 NVLVVGCGNSGME 216
V V+G G+SG++
Sbjct: 193 RVGVIGTGSSGIQ 205
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF 97
++VGAG SGL L E G ++E A + +W Y P C + + +
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-------PGARCDIESIEY 72
Query: 98 PSNFPT-----------YPTKQQFLTYLETYTNHFGLDP--VFNTTVVNAEYDHLSRLWR 144
+F Y ++ + L Y+ + F L F+TTV A +D + W
Sbjct: 73 CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWT 132
Query: 145 VKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGEL-FRDK 203
V T G + ++LI+A+G+ + +P G+ F G ++H+ ++ + F +
Sbjct: 133 VDTNHGDRIR-----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 204 NVLVVGCGNSGMEVSLDLCNYNA 226
V V+G G+SG++VS + A
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAA 210
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF 97
++VGAG SGL L E G ++E A + +W Y P C + + +
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-------PGARCDIESIEY 72
Query: 98 PSNFPT-----------YPTKQQFLTYLETYTNHFGLDP--VFNTTVVNAEYDHLSRLWR 144
+F Y ++ + L Y+ + F L F+TTV A +D + W
Sbjct: 73 CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWT 132
Query: 145 VKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGEL-FRDK 203
V T G + ++LI+A+G+ + +P G+ F G ++H+ ++ + F +
Sbjct: 133 VDTNHGDRIR-----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 204 NVLVVGCGNSGMEVSLDLCNYNA 226
V V+G G+SG++VS + A
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAA 210
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF 97
++VGAG SGL L E G ++E A + +W Y P C + + +
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-------PGARCDIESIEY 72
Query: 98 PSNFPT-----------YPTKQQFLTYLETYTNHFGLDP--VFNTTVVNAEYDHLSRLWR 144
+F Y ++ + L Y+ + F L F+TTV A +D + W
Sbjct: 73 CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWT 132
Query: 145 VKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGEL-FRDK 203
V T G + ++LI+A+G+ + +P G+ F G ++H+ ++ + F +
Sbjct: 133 VDTNHGDRIR-----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 204 NVLVVGCGNSGMEVSLDLCNYNA 226
V V+G G+SG++VS + A
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAA 210
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF 97
++VGAG SGL L E G ++E A + +W Y P C + + +
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-------PGARCAIESIEY 72
Query: 98 PSNFPT-----------YPTKQQFLTYLETYTNHFGLDP--VFNTTVVNAEYDHLSRLWR 144
+F Y ++ + L Y+ + F L F+TTV A +D + W
Sbjct: 73 CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWT 132
Query: 145 VKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGEL-FRDK 203
V T G + ++LI+A+G+ + +P G+ F G ++H+ ++ + F +
Sbjct: 133 VDTNHGDRIR-----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 204 NVLVVGCGNSGMEVSLDLCNYNA 226
V V+G G+SG++VS + A
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAA 210
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 12/210 (5%)
Query: 38 VIVGAGPSGL-ATAACLTEKGVPSLILERANCIASLWQLKTY----DRLRLHLPKQFCQL 92
V++GAG G+ A E G+ ++ ++A+ W Y HL +
Sbjct: 45 VVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDR 104
Query: 93 PLMPFPSNFPTYPTKQQFLTYLETYTNHFGLDP--VFNTTVVNAEYDHLSRLWRVKTQQG 150
L+ + TY T+ + L YLE + F L F T V +A Y LW V T G
Sbjct: 105 DLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG 164
Query: 151 LKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGC 210
VY ++++ A G + P + G+D F G H++++ G+ + V V+G
Sbjct: 165 -----EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGT 219
Query: 211 GNSGMEVSLDLCNYNARPSLVVRDTVHVLP 240
G++G +V L ++ VR + +P
Sbjct: 220 GSTGQQVITSLAPEVEHLTVFVRTPQYSVP 249
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 12/210 (5%)
Query: 38 VIVGAGPSGL-ATAACLTEKGVPSLILERANCIASLWQLKTY----DRLRLHLPKQFCQL 92
V++GAG G+ A E G+ ++ ++A+ W Y HL +
Sbjct: 12 VVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDR 71
Query: 93 PLMPFPSNFPTYPTKQQFLTYLETYTNHFGLDP--VFNTTVVNAEYDHLSRLWRVKTQQG 150
L+ + TY T+ + L YLE + F L F T V +A Y LW V T G
Sbjct: 72 DLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG 131
Query: 151 LKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGC 210
VY ++++ A G + P + G+D F G H++++ G+ + V V+G
Sbjct: 132 -----EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGT 186
Query: 211 GNSGMEVSLDLCNYNARPSLVVRDTVHVLP 240
G++G +V L ++ VR + +P
Sbjct: 187 GSTGQQVITSLAPEVEHLTVFVRTPQYSVP 216
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 31/219 (14%)
Query: 38 VIVGAGPSGLATAACLT---EKG--VPSLI-LERANCIASLWQL---------------K 76
I+GAGPSG+A EKG +P L+ E+ W
Sbjct: 6 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 77 TYDRLRLHLPKQFCQLPLMPFPSNF----PTYPTKQQFLTYLETYTNHFGLDPV--FNTT 130
Y L + PK+ + F +F +YP ++ Y++ G+ FNT
Sbjct: 66 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 131 VVNAEYDHLSRLWRVKTQQGLKQEETVYLCQ--WLIVATGENAEEVVPYIEGMDGFRGPI 188
V + E++ S+ + V Q +T+Y + +++ TG + VP EG + F G I
Sbjct: 126 VRHVEFNEDSQTFTVTVQD--HTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRI 183
Query: 189 FHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR 227
H+ ++ F+DK VL+VG +S ++ Y A+
Sbjct: 184 LHAHDFRDALEFKDKTVLLVGSSSSAEDIGSQCYKYGAK 222
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 325 RLTHHAAEFIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNG--WKGA 382
R+ A F DGS E DAIIL TGY + P+ D + + +P + G W+
Sbjct: 249 RVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWEDN 307
Query: 383 HGLYAVGFNKRGLLGASIDARR-ISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEFNSMV 441
+ +G + DA+ + D+ +M LPLP ++++ +SM
Sbjct: 308 PKFFYIGMQDQWYSFNMFDAQAWYARDV----------IMG---RLPLPSKEEMKADSMA 354
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 94/230 (40%), Gaps = 36/230 (15%)
Query: 27 SAARRIMVPGPVIVGAGPSGLATAACLT---EKG--VPSLI-LERANCIASLWQL----- 75
S A RI I+GAGPSG+A EKG +P L+ E+ W
Sbjct: 5 SMATRI-----AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTG 59
Query: 76 ----------KTYDRLRLHLPKQFCQLPLMPFPSNF----PTYPTKQQFLTYLETYTNHF 121
Y L + PK+ + F +F +YP ++ Y++
Sbjct: 60 LDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKA 119
Query: 122 GLDPV--FNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLC--QWLIVATGENAEEVVPY 177
G+ FNT V + E++ S+ + V Q +T+Y +++ TG + VP
Sbjct: 120 GVRKYIRFNTAVRHVEFNEDSQTFTVTVQD--HTTDTIYSAAFDYVVCCTGHFSTPYVPE 177
Query: 178 IEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR 227
EG + F G I H+ ++ F+DK VL+VG S ++ Y A+
Sbjct: 178 FEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 325 RLTHHAAEFIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNG--WKGA 382
R+ A F DGS E DAIIL TGY + P+ D + + +P + G W+
Sbjct: 254 RVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWEDN 312
Query: 383 HGLYAVGFNKRGLLGASIDARR-ISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEFNSMV 441
+ +G + DA+ + D+ +M LPLP ++++ +SM
Sbjct: 313 PKFFYIGMQDQWYSFNMFDAQAWYARDV----------IMG---RLPLPSKEEMKADSMA 359
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 93/230 (40%), Gaps = 36/230 (15%)
Query: 27 SAARRIMVPGPVIVGAGPSGLATAACLT---EKG--VPSLI-LERANCIASLWQL----- 75
S A RI I+GAGPSG+A EKG +P L+ E+ W
Sbjct: 5 SMATRI-----AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTG 59
Query: 76 ----------KTYDRLRLHLPKQFCQLPLMPFPSNF----PTYPTKQQFLTYLETYTNHF 121
Y L PK+ + F +F +YP ++ Y++
Sbjct: 60 LDENGEPVHSSMYRYLWSDGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKA 119
Query: 122 GLDPV--FNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLC--QWLIVATGENAEEVVPY 177
G+ FNT V + E++ S+ + V Q +T+Y +++ TG + VP
Sbjct: 120 GVRKYIRFNTAVRHVEFNEDSQTFTVTVQD--HTTDTIYSAAFDYVVCCTGHFSTPYVPE 177
Query: 178 IEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR 227
EG + F G I H+ ++ F+DK VL+VG S ++ Y A+
Sbjct: 178 FEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 325 RLTHHAAEFIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNG--WKGA 382
R+ A F DGS E DAIIL TGY + P+ D + + +P + G W+
Sbjct: 254 RVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWEDN 312
Query: 383 HGLYAVGFNKRGLLGASIDARR-ISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEFNSMV 441
+ +G + DA+ + D+ +M LPLP ++++ +SM
Sbjct: 313 PKFFYIGMQDQWYSFNMFDAQAWYARDV----------IMG---RLPLPSKEEMKADSMA 359
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 93/230 (40%), Gaps = 36/230 (15%)
Query: 27 SAARRIMVPGPVIVGAGPSGLATAACLT---EKG--VPSLI-LERANCIASLWQL----- 75
S A RI I+GAGPSG+A EKG +P L+ E+ W
Sbjct: 5 SMATRI-----AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTG 59
Query: 76 ----------KTYDRLRLHLPKQFCQLPLMPFPSNF----PTYPTKQQFLTYLETYTNHF 121
Y L PK+ + F +F +YP ++ Y++
Sbjct: 60 LDENGEPVHSSMYRYLWSKGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKA 119
Query: 122 GLDPV--FNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLC--QWLIVATGENAEEVVPY 177
G+ FNT V + E++ S+ + V Q +T+Y +++ TG + VP
Sbjct: 120 GVRKYIRFNTAVRHVEFNEDSQTFTVTVQD--HTTDTIYSAAFDYVVCCTGHFSTPYVPE 177
Query: 178 IEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR 227
EG + F G I H+ ++ F+DK VL+VG S ++ Y A+
Sbjct: 178 FEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 325 RLTHHAAEFIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNG--WKGA 382
R+ A F DGS E DAIIL TGY + P+ D + + +P + G W+
Sbjct: 254 RVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWEDN 312
Query: 383 HGLYAVGFNKRGLLGASIDARR-ISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEFNSMV 441
+ +G + DA+ + D+ +M LPLP ++++ +SM
Sbjct: 313 PKFFYIGMQDQWYSFNMFDAQAWYARDV----------IMG---RLPLPSKEEMKADSMA 359
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 93/230 (40%), Gaps = 36/230 (15%)
Query: 27 SAARRIMVPGPVIVGAGPSGLATAACLT---EKG--VPSLI-LERANCIASLWQL----- 75
S A RI I+GAGPSG+A EKG +P L+ E+ W
Sbjct: 5 SMATRI-----AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTG 59
Query: 76 ----------KTYDRLRLHLPKQFCQLPLMPFPSNF----PTYPTKQQFLTYLETYTNHF 121
Y L PK+ + F +F +YP ++ Y++
Sbjct: 60 LDENGEPVHSSMYRYLWSSGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKA 119
Query: 122 GLDPV--FNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLC--QWLIVATGENAEEVVPY 177
G+ FNT V + E++ S+ + V Q +T+Y +++ TG + VP
Sbjct: 120 GVRKYIRFNTAVRHVEFNEDSQTFTVTVQD--HTTDTIYSAAFDYVVCCTGHFSTPYVPE 177
Query: 178 IEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR 227
EG + F G I H+ ++ F+DK VL+VG S ++ Y A+
Sbjct: 178 FEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 325 RLTHHAAEFIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNG--WKGA 382
R+ A F DGS E DAIIL TGY + P+ D + + +P + G W+
Sbjct: 254 RVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWEDN 312
Query: 383 HGLYAVGFNKRGLLGASIDARR-ISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEFNSMV 441
+ +G + DA+ + D+ +M LPLP ++++ +SM
Sbjct: 313 PKFFYIGMQDQWYSFNMFDAQAWYARDV----------IMG---RLPLPSKEEMKADSMA 359
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 31/219 (14%)
Query: 38 VIVGAGPSGLATAACLT---EKG--VPSLI-LERANCIASLWQL---------------K 76
I+GAGPSG+A EKG +P L+ E+ W
Sbjct: 6 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 77 TYDRLRLHLPKQFCQLPLMPFPSNF----PTYPTKQQFLTYLETYTNHFGLDPV--FNTT 130
Y L + PK+ + F +F +YP ++ Y++ G+ FNT
Sbjct: 66 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 131 VVNAEYDHLSRLWRVKTQQGLKQEETVYLCQ--WLIVATGENAEEVVPYIEGMDGFRGPI 188
V + E++ S+ + V Q +T+Y + +++ TG + VP EG + F G I
Sbjct: 126 VRHVEFNEDSQTFTVTVQD--HTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRI 183
Query: 189 FHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR 227
H+ ++ F+DK VL+VG S ++ Y A+
Sbjct: 184 LHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 222
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 325 RLTHHAAEFIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNG--WKGA 382
R+ A F DGS E DAIIL TGY + P+ D + + +P + G W+
Sbjct: 249 RVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWEDN 307
Query: 383 HGLYAVGFNKRGLLGASIDARR-ISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEFNSMV 441
+ +G + DA+ + D+ +M LPLP ++++ +SM
Sbjct: 308 PKFFYIGMQDQWYSFNMFDAQAWYARDV----------IMG---RLPLPSKEEMKADSMA 354
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 31/219 (14%)
Query: 38 VIVGAGPSGLATAACLT---EKG--VPSLI-LERANCIASLWQL---------------K 76
I+GAGPSG A EKG +P L+ E+ W
Sbjct: 6 AILGAGPSGXAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 77 TYDRLRLHLPKQFCQLPLMPFPSNF----PTYPTKQQFLTYLETYTNHFGLDPV--FNTT 130
Y L + PK+ + F +F +YP ++ Y++ G+ FNT
Sbjct: 66 XYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 131 VVNAEYDHLSRLWRVKTQQGLKQEETVYLCQ--WLIVATGENAEEVVPYIEGMDGFRGPI 188
V + E++ S+ + V Q +T+Y + +++ TG + VP EG + F G I
Sbjct: 126 VRHVEFNEDSQTFTVTVQD--HTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRI 183
Query: 189 FHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR 227
H+ ++ F+DK VL+VG S ++ Y A+
Sbjct: 184 LHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 222
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 325 RLTHHAAEFIDGSIENYDAIILATGYKSNVPY 356
R+ A F DGS E DAIIL TGY + P+
Sbjct: 249 RVDTENAYFADGSSEKVDAIILCTGYIHHFPF 280
>pdb|4A5L|A Chain A, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica
pdb|4A5L|B Chain B, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica
pdb|4A65|A Chain A, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica With Aucn
pdb|4A65|B Chain B, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica With Aucn
Length = 314
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 94/206 (45%), Gaps = 40/206 (19%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILE--RANCIASLWQLKTYDRLRLHLPKQFCQLPLM 95
VI+G+GP+ A L + ++ E A +A+ QL T +
Sbjct: 8 VIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIE------------- 54
Query: 96 PFPSNFPTYPTK---QQFLTYLETYTNHFGLDPVFNTTVVNAEYDHL---SRLWRVKTQQ 149
NFP +P + + + T + +G TT++ DH+ ++ +++ T++
Sbjct: 55 ----NFPGFPNGIDGNELMMNMRTQSEKYG------TTIITETIDHVDFSTQPFKLFTEE 104
Query: 150 GLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGE--LFRDKNVLV 207
G + L + +I+ATG A+ + ++ G D + + + G +FR+K ++V
Sbjct: 105 GKE-----VLTKSVIIATGATAKRM--HVPGEDKYWQNGVSACAICDGAVPIFRNKVLMV 157
Query: 208 VGCGNSGMEVSLDLCNYNARPSLVVR 233
VG G++ ME +L L Y ++ ++ R
Sbjct: 158 VGGGDAAMEEALHLTKYGSKVIILHR 183
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 88/230 (38%), Gaps = 40/230 (17%)
Query: 38 VIVGAGPSGLATA-ACLTEKGVPSLIL-ERANCIASLWQLKTYDRLRLHLPKQFCQLPLM 95
I+GAGPSGL TA A L EK + L ER +W + +L +P L
Sbjct: 12 AIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTE 71
Query: 96 PF--PSNFPTYPT----------------------KQQFLTY-----LETYTNHFG--LD 124
P P+ P YP+ K Q L + ++ Y + L
Sbjct: 72 PIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLL 131
Query: 125 PVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVY--LCQWLIVATGENAEEVVPYIEGMD 182
P + + W V T +G K + + + + G +P I+G+D
Sbjct: 132 PFIKLATDVLDIEKKDGSWVV-TYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLD 190
Query: 183 GFR----GPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARP 228
+ G + HSS ++ ELF ++VLVVG +S ++ L P
Sbjct: 191 EYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHP 240
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 88/230 (38%), Gaps = 40/230 (17%)
Query: 38 VIVGAGPSGLATA-ACLTEKGVPSLIL-ERANCIASLWQLKTYDRLRLHLPKQFCQLPLM 95
I+GAGPSGL TA A L EK + L ER +W + +L +P L
Sbjct: 10 AIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTE 69
Query: 96 PF--PSNFPTYPT----------------------KQQFLTY-----LETYTNHFG--LD 124
P P+ P YP+ K Q L + ++ Y + L
Sbjct: 70 PIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLL 129
Query: 125 PVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVY--LCQWLIVATGENAEEVVPYIEGMD 182
P + + W V T +G K + + + + G +P I+G+D
Sbjct: 130 PFIKLATDVLDIEKKDGSWVV-TYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLD 188
Query: 183 GFR----GPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARP 228
+ G + HSS ++ ELF ++VLVVG +S ++ L P
Sbjct: 189 EYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHP 238
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 127 FNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV-VPYIEGMDGFR 185
F T ++ +DH++++ L + Y C LI+ATG +A + +P E F+
Sbjct: 75 FETEII---FDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEA---FK 128
Query: 186 GPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVR 233
G +S+ G +R++ V V+G GN+ +E +L L N + L+ R
Sbjct: 129 GRGVSASATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 127 FNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV-VPYIEGMDGFR 185
F T ++ +DH++++ L + Y C LI+ATG +A + +P E F+
Sbjct: 75 FETEII---FDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEA---FK 128
Query: 186 GPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVR 233
G + + G +R++ V V+G GN+ +E +L L N + L+ R
Sbjct: 129 GRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 127 FNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV-VPYIEGMDGFR 185
F T ++ +DH++++ L + Y C LI+ATG +A + +P E F+
Sbjct: 75 FETEII---FDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEA---FK 128
Query: 186 GPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVR 233
G + + G +R++ V V+G GN+ +E +L L N + L+ R
Sbjct: 129 GRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 100 NFPTYPTK--QQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEET- 156
N+ + P Q+ L+ + + + +D + + + S+L T+ GL Q ET
Sbjct: 257 NYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSA--------SKLVPAATEGGLHQIETA 308
Query: 157 ---VYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNS 213
V + +I+ATG + + G D +R + G LF+ K V V+G GNS
Sbjct: 309 SGAVLKARSIIIATGAKWRNM--NVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNS 366
Query: 214 GMEVSLDLC 222
G+E ++DL
Sbjct: 367 GVEAAIDLA 375
>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2
pdb|2WHD|B Chain B, Barley Nadph-Dependent Thioredoxin Reductase 2
Length = 351
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 16/148 (10%)
Query: 91 QLPLMPFPSNFPTYPTKQQFLTYLE---TYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKT 147
QL NFP +PT + ++ + FG + + + TV E D +R +RV +
Sbjct: 72 QLTTTTDVENFPGFPTGIMGIDLMDNCRAQSVRFGTN-ILSETVT--EVDFSARPFRVTS 128
Query: 148 QQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGF--RGPIFHSSSYKTGELFRDKNV 205
+ T L ++VATG A + Y G D + RG + +FR+K +
Sbjct: 129 ------DSTTVLADTVVVATGAVARRL--YFSGSDTYWNRGISACAVCDGAAPIFRNKPI 180
Query: 206 LVVGCGNSGMEVSLDLCNYNARPSLVVR 233
V+G G+S ME L Y ++ ++ R
Sbjct: 181 AVIGGGDSAMEEGNFLTKYGSQVYIIHR 208
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 100 NFPTYPTK--QQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEET- 156
N+ + P Q+ L+ + + + +D + + + S+L + GL Q ET
Sbjct: 46 NYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSA--------SKLIPAAVEGGLHQIETA 97
Query: 157 ---VYLCQWLIVATGENAEEV-VPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGN 212
V + +IVATG + VP G D +R + G LF+ K V V+G GN
Sbjct: 98 SGAVLKARSIIVATGAKWRNMNVP---GEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGN 154
Query: 213 SGMEVSLDLC 222
SG+E ++DL
Sbjct: 155 SGVEAAIDLA 164
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 127 FNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV-VPYIEGMDGFR 185
F T ++ +DH++++ L + Y C LI+ATG +A + +P E F+
Sbjct: 75 FETEII---FDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEA---FK 128
Query: 186 GPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVR 233
G + + G +R++ V V+G GN+ +E +L L N + L+ R
Sbjct: 129 GRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 127 FNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV-VPYIEGMDGFR 185
F T ++ +DH++++ L + Y C LI+ATG +A + +P E F+
Sbjct: 75 FETEII---FDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEA---FK 128
Query: 186 GPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVR 233
G + + G +R++ V V+G GN+ +E +L L N + L+ R
Sbjct: 129 GRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
Length = 338
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 89/203 (43%), Gaps = 31/203 (15%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILE--RANCIASLWQLKTYDRLRLHLPKQFCQLPLM 95
I+G+GP+ A L + ++ E AN IA+ QL T +
Sbjct: 26 TIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIE------------- 72
Query: 96 PFPSNFPTYP---TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLK 152
NFP +P T + + + + FG + + T ++ D S+ +++ T+
Sbjct: 73 ----NFPGFPDGLTGSELMDRMREQSTKFGTEIITETV---SKVDLSSKPFKLWTE--FN 123
Query: 153 QEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGE--LFRDKNVLVVGC 210
++ +I+ATG +A+ + ++ G + + + + G +FR+K + V+G
Sbjct: 124 EDAEPVTTDAIILATGASAKRM--HLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGG 181
Query: 211 GNSGMEVSLDLCNYNARPSLVVR 233
G+S E + L Y ++ ++VR
Sbjct: 182 GDSACEEAQFLTKYGSKVFMLVR 204
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 89/203 (43%), Gaps = 31/203 (15%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILE--RANCIASLWQLKTYDRLRLHLPKQFCQLPLM 95
I+G+GP+ A L + ++ E AN IA+ QL T +
Sbjct: 14 TIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIE------------- 60
Query: 96 PFPSNFPTYP---TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLK 152
NFP +P T + + + + FG + + T ++ D S+ +++ T+
Sbjct: 61 ----NFPGFPDGLTGSELMDRMREQSTKFGTEIITETV---SKVDLSSKPFKLWTE--FN 111
Query: 153 QEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGE--LFRDKNVLVVGC 210
++ +I+ATG +A+ + ++ G + + + + G +FR+K + V+G
Sbjct: 112 EDAEPVTTDAIILATGASAKRM--HLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGG 169
Query: 211 GNSGMEVSLDLCNYNARPSLVVR 233
G+S E + L Y ++ ++VR
Sbjct: 170 GDSACEEAQFLTKYGSKVFMLVR 192
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 31/204 (15%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF 97
VI+G GP+GL A + +LILE+ +P Q+
Sbjct: 12 VIIGGGPAGLTAAIYTGRAQLSTLILEKG------------------MPG--GQIAWSEE 51
Query: 98 PSNFPTYP---TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQE 154
NFP +P + + FG V V ++D S + T +G E
Sbjct: 52 VENFPGFPEPIAGMELAQRMHQQAEKFGA-KVEMDEVQGVQHDATSHPYPF-TVRGYNGE 109
Query: 155 ETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSG 214
Y + +I+ATG + ++ I G D F G + + G ++ K V+V+G G++
Sbjct: 110 ---YRAKAVILATGADPRKL--GIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAA 164
Query: 215 MEVSLDLCNYNARPSLV-VRDTVH 237
+E + L + +++ RDT+
Sbjct: 165 VEEGMFLTKFADEVTVIHRRDTLR 188
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 28/126 (22%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF 97
++VG GPSGL+ A L G+ L+L+ K ++P
Sbjct: 5 IVVGGGPSGLSAALFLARAGLKVLVLDGGRSKV----------------KGVSRVP---- 44
Query: 98 PSNFPTY---PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQE 154
N+P P+ ++ L LE + +G + VV D ++ V+T++G+++
Sbjct: 45 --NYPGLLDEPSGEELLRRLEAHARRYGAE--VRPGVVKGVRD-XGGVFEVETEEGVEKA 99
Query: 155 ETVYLC 160
E + LC
Sbjct: 100 ERLLLC 105
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 119 NHFGLDPVFNTTVVNAEYDHLSRLWRV----------KTQQGLKQE--ETVYLCQWLIVA 166
N+ G + + + DH + ++ KTQ G E + Y +++I+
Sbjct: 62 NYLGFKSIVGSELAKLFADHAANYAKIREGVEVRSIKKTQGGFDIETNDDTYHAKYVIIT 121
Query: 167 TGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNA 226
TG + + ++G + G S G LF+ K V+ +G GNSG ++ + Y
Sbjct: 122 TGTTHKHLG--VKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVK 179
Query: 227 RPSLV 231
+++
Sbjct: 180 NVTII 184
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF 97
+IVGAGP+GL + +G+ ++ LP+ QL + +
Sbjct: 9 LIVGAGPTGLFAGFYVGXRGLSFRFVD-------------------PLPEPGGQLTAL-Y 48
Query: 98 P-------SNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQG 150
P + FP K +E +PV++ + L++V T QG
Sbjct: 49 PEKYIYDVAGFPKVYAKDLVKGLVEQVAP---FNPVYSLGERAETLEREGDLFKVTTSQG 105
Query: 151 LKQEETVYLCQWLIVATGENAEEVVPYIEGMDG---FRGPIFHSSSYKTGELFRDKNVLV 207
Y + +I+A G A E P G G F G + + E F+ K VL+
Sbjct: 106 -----NAYTAKAVIIAAGVGAFE--PRRIGAPGEREFEGRGVYYAVKSKAE-FQGKRVLI 157
Query: 208 VGCGNSGMEVSLDLCNYNARPSLVVR 233
VG G+S ++ +L+L + R +L+ R
Sbjct: 158 VGGGDSAVDWALNLLDTARRITLIHR 183
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 39/205 (19%)
Query: 39 IVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFP 98
I+G GP+G+ A + I+E +P+ QL + +P
Sbjct: 19 IIGGGPTGIFAAFQCGMNNISCRIIES-------------------MPQLGGQLAAL-YP 58
Query: 99 -------SNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSR-LWRVKTQQG 150
+ FP P + L + D V N TV +Y L + +T G
Sbjct: 59 EKHIYDVAGFPEVPA-IDLVESLWAQAERYNPDVVLNETVT--KYTKLDDGTFETRTNTG 115
Query: 151 LKQEETVYLCQWLIVATGENAEE--VVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVV 208
VY + +++A G A E +P + +D G + + K+ E F+ K V++V
Sbjct: 116 -----NVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIV 169
Query: 209 GCGNSGMEVSLDLCNYNARPSLVVR 233
G G+S ++ ++ L A +LV R
Sbjct: 170 GGGDSALDWTVGLIKNAASVTLVHR 194
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFC 90
IVGAGPSGLA A L + G+ ++E + + T D L + Q+
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFC 90
IVGAGPSGLA A L + G+ ++E + + T D L + Q+
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFC 90
IVGAGPSGLA A L + G+ ++E + + T D L + Q+
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 28 AARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67
A ++ P VI+GAGP+GL A LTE G + L N
Sbjct: 3 AMAELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECN 42
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFC 90
VIVGAGPSGL A L + G+ +LE + + T D L + Q+
Sbjct: 11 VIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWV 63
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILE 64
V++G G SGL+ A LTE GV L+LE
Sbjct: 6 VVIGGGISGLSAAKLLTEYGVSVLVLE 32
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILE 64
V++G G SGL+ A LTE GV L+LE
Sbjct: 6 VVIGGGISGLSAAKLLTEYGVSVLVLE 32
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILE 64
V++G G SGL+ A LTE GV L+LE
Sbjct: 17 VVIGGGISGLSAAKLLTEYGVSVLVLE 43
>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|B Chain B, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|C Chain C, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|D Chain D, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
Length = 404
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 20/95 (21%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF 97
VI+G GP GLA A L G +IL + +R +L K+
Sbjct: 218 VILGGGPIGLAAVAILKHAGASKVILSEPS------------EVRRNLAKELG------- 258
Query: 98 PSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVV 132
++ PTK+ F+ + YTN G T V
Sbjct: 259 -ADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV 292
>pdb|1VDC|A Chain A, Structure Of Nadph Dependent Thioredoxin Reductase
Length = 333
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 35/204 (17%)
Query: 39 IVGAGPSGLATAACLTEKGVPSLILE--RANCIASLWQLKTYDRLRLHLPKQFCQLPLMP 96
IVG+GP+ A + L+ E AN IA QL T +
Sbjct: 13 IVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVE-------------- 58
Query: 97 FPSNFPTYPTK---QQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQ 153
NFP +P + + FG +F TV ++ S+ +++ T
Sbjct: 59 ---NFPGFPEGILGVELTDKFRKQSERFGT-TIFTETVTKVDFS--SKPFKLFT------ 106
Query: 154 EETVYLCQWLIVATGENAEEV--VPYIEGMDGF--RGPIFHSSSYKTGELFRDKNVLVVG 209
+ L +I+A G A+ + V E + GF RG + +FR+K + V+G
Sbjct: 107 DSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIG 166
Query: 210 CGNSGMEVSLDLCNYNARPSLVVR 233
G+S ME + L Y ++ ++ R
Sbjct: 167 GGDSAMEEANFLTKYGSKVYIIHR 190
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERAN 67
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERTT 35
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERA 66
+IVGAGP G+ A L+E G L+LER
Sbjct: 6 IIVGAGPGGIIAADRLSEAGKKVLLLERG 34
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERA 66
+IVGAGP G+ A L+E G L+LER
Sbjct: 11 IIVGAGPGGIIAADRLSEAGKKVLLLERG 39
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
I+GAGPSGL L + G+ ++ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|3D1C|A Chain A, Crystal Structure Of Flavin-Containing Putative
Monooxygenase (Np_373108.1) From Staphylococcus Aureus
Mu50 At 2.40 A Resolution
Length = 369
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 16/128 (12%)
Query: 108 QQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVAT 167
+ + YL+ NH+ L+ NT V N D T+ Y ++ VAT
Sbjct: 88 ETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE--------TYHADYIFVAT 139
Query: 168 GENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR 227
G+ P+ G+ H S + + F +V+G SG + + L +
Sbjct: 140 GDYNFPKKPFKYGI--------HYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSD 191
Query: 228 PSLVVRDT 235
+L T
Sbjct: 192 IALYTSTT 199
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 35 PGPVIVGAGPSGLATAACLTEKGVPS-LILERANCIA 70
P ++VGAG SG++ A L+E G+ LILE + I
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG 41
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 35 PGPVIVGAGPSGLATAACLTEKGVPS-LILERANCIA 70
P ++VGAG SG++ A L+E G+ LILE + I
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG 41
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 2 DNNNHLKEVEGKRVHDHF----NNKKAAISAARRIMVPGPVIVGAGPSGLATAACLTEKG 57
D+ N L+E + ++ F N + S +R+ VIVGAG SGL+ A L G
Sbjct: 15 DDRNPLEECFRETDYEEFLEIAKNGLSTTSNPKRV-----VIVGAGMSGLSAAYVLANAG 69
Query: 58 VPSLILERANCIASLWQLKTY 78
+LE + Q+KTY
Sbjct: 70 HQVTVLEASERAGG--QVKTY 88
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 35 PGP----VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLR-----LHL 85
PGP +IVGAG +GL LT G ILE AN ++KT+ +
Sbjct: 41 PGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILE-ANANRVGGRIKTFHAKKGEPSPFAD 99
Query: 86 PKQFCQLPLMPFPSNFP 102
P Q+ + M PS P
Sbjct: 100 PAQYAEAGAMRLPSFHP 116
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFC 90
IVGAG SGLA A L + G+ ++E + + T D L + Q+
Sbjct: 9 AIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|3S5W|A Chain A, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S5W|B Chain B, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S61|A Chain A, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
pdb|3S61|B Chain B, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
Length = 463
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 337 SIENYDAIILATGYKSNV 354
S+E YDA+ILATGY+ +
Sbjct: 362 SVETYDAVILATGYERQL 379
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 9/104 (8%)
Query: 132 VNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191
V YD +RL + +E + + + G+ A E EG
Sbjct: 106 VKKAYDRAARLGTL--------DEALKIVFRRAINLGKRAREETRISEGAVSIGSAAVEL 157
Query: 192 SSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235
+ + G L DK VLVVG G G V+ L + R LV T
Sbjct: 158 AERELGSLH-DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 200
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILER 65
++VGAG GL+TA L +GV L++ER
Sbjct: 9 LVVGAGLGGLSTAMFLARQGVRVLVVER 36
>pdb|4B7Q|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7Q|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7Q|C Chain C, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7Q|D Chain D, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
Length = 469
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 357 WLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAV 388
W+ T+ S ++GF + PNGW G +++
Sbjct: 358 WIGRTKSISSRNGFEMIWDPNGWTGTDNNFSI 389
>pdb|4B7J|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7M|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7M|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7N|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
Length = 469
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 357 WLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAV 388
W+ T+ S ++GF + PNGW G +++
Sbjct: 358 WIGRTKSISSRNGFEMIWDPNGWTGTDNDFSI 389
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 38 VIVGAGPSGLATAACLTEKGVPSLILERAN 67
++GAG GLA A L G+P L+LE+ +
Sbjct: 5 TVIGAGFGGLALAIRLQAAGIPVLLLEQRD 34
>pdb|3NSS|A Chain A, The 2009 Pandemic H1n1 Neuraminidase N1 Lacks The
150-Cavity In Its Active Sites
pdb|3NSS|B Chain B, The 2009 Pandemic H1n1 Neuraminidase N1 Lacks The
150-Cavity In Its Active Sites
pdb|3TI3|A Chain A, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Laninamivir
pdb|3TI3|B Chain B, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Laninamivir
pdb|3TI4|A Chain A, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TI4|B Chain B, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TI5|A Chain A, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Zanamivir
pdb|3TI5|B Chain B, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Zanamivir
pdb|3TI6|A Chain A, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Oseltamivir
pdb|3TI6|B Chain B, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Oseltamivir
Length = 388
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 357 WLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAV 388
W+ T+ S ++GF + PNGW G +++
Sbjct: 277 WIGRTKSISSRNGFEMIWDPNGWTGTDNNFSI 308
>pdb|4B7R|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7R|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7R|C Chain C, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7R|D Chain D, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
Length = 387
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 357 WLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAV 388
W+ T+ S ++GF + PNGW G +++
Sbjct: 276 WIGRTKSISSRNGFEMIWDPNGWTGTDNNFSI 307
>pdb|3NLC|A Chain A, Crystal Structure Of The Vp0956 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr147
Length = 549
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 37 PVIVGAGPSGLATAACLTEKGVPSLILERANCI 69
P+++G GP GL L + G +I+ER +
Sbjct: 110 PIVIGFGPCGLFAGLVLAQXGFNPIIVERGKEV 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,137,788
Number of Sequences: 62578
Number of extensions: 595945
Number of successful extensions: 1952
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1796
Number of HSP's gapped (non-prelim): 142
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)