Query 013435
Match_columns 443
No_of_seqs 179 out of 2346
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:49:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 1.5E-42 3.3E-47 344.2 21.9 365 35-413 2-396 (531)
2 PLN02172 flavin-containing mon 100.0 1.2E-37 2.5E-42 305.8 30.1 312 30-413 6-352 (461)
3 COG0492 TrxB Thioredoxin reduc 100.0 1E-35 2.2E-40 274.4 25.8 283 33-415 2-302 (305)
4 COG2072 TrkA Predicted flavopr 100.0 1.5E-34 3.2E-39 282.8 31.6 357 31-396 5-391 (443)
5 TIGR01292 TRX_reduct thioredox 100.0 1.5E-34 3.2E-39 272.7 26.5 284 35-413 1-300 (300)
6 COG1249 Lpd Pyruvate/2-oxoglut 100.0 4.5E-35 9.8E-40 283.1 19.0 329 33-437 3-360 (454)
7 PRK10262 thioredoxin reductase 100.0 7.2E-34 1.6E-38 269.9 25.9 293 32-416 4-317 (321)
8 PRK15317 alkyl hydroperoxide r 100.0 2.4E-33 5.3E-38 281.8 26.4 290 31-416 208-514 (517)
9 TIGR03140 AhpF alkyl hydropero 100.0 2.2E-33 4.7E-38 281.8 25.9 290 30-415 208-514 (515)
10 PLN02507 glutathione reductase 100.0 8.2E-34 1.8E-38 282.9 22.1 331 32-437 23-388 (499)
11 TIGR01421 gluta_reduc_1 glutat 100.0 9.4E-34 2E-38 279.9 20.5 324 33-437 1-354 (450)
12 TIGR01424 gluta_reduc_2 glutat 100.0 2.4E-33 5.3E-38 277.4 23.2 324 34-437 2-351 (446)
13 PRK06116 glutathione reductase 100.0 6E-33 1.3E-37 275.4 21.3 322 34-437 4-354 (450)
14 KOG1399 Flavin-containing mono 100.0 2.9E-32 6.4E-37 262.3 24.9 308 32-413 4-333 (448)
15 TIGR03143 AhpF_homolog putativ 100.0 2.8E-32 6E-37 275.7 25.9 290 33-418 3-313 (555)
16 PRK05249 soluble pyridine nucl 100.0 2.3E-32 5E-37 272.4 24.3 305 33-412 4-335 (461)
17 PRK13512 coenzyme A disulfide 100.0 1.1E-32 2.5E-37 271.7 20.2 285 35-411 2-311 (438)
18 PRK06370 mercuric reductase; V 100.0 1.1E-32 2.4E-37 274.4 20.0 323 34-437 5-359 (463)
19 TIGR02053 MerA mercuric reduct 100.0 1.1E-32 2.4E-37 274.5 18.4 326 35-437 1-354 (463)
20 PRK08010 pyridine nucleotide-d 100.0 8.6E-32 1.9E-36 266.5 23.6 323 34-437 3-343 (441)
21 KOG0404 Thioredoxin reductase 100.0 2.4E-32 5.2E-37 228.5 15.2 289 34-414 8-319 (322)
22 TIGR01423 trypano_reduc trypan 100.0 7E-32 1.5E-36 267.3 21.4 333 33-437 2-376 (486)
23 COG1252 Ndh NADH dehydrogenase 100.0 3.5E-32 7.6E-37 256.3 18.2 288 33-415 2-333 (405)
24 PLN02546 glutathione reductase 100.0 1.2E-32 2.7E-37 275.5 15.0 325 32-436 77-437 (558)
25 PRK06416 dihydrolipoamide dehy 100.0 8.8E-32 1.9E-36 268.1 20.8 303 33-412 3-334 (462)
26 PRK14694 putative mercuric red 100.0 3E-31 6.4E-36 264.1 22.3 329 32-437 4-359 (468)
27 PRK07818 dihydrolipoamide dehy 100.0 3.2E-31 6.8E-36 264.0 22.3 332 34-437 4-362 (466)
28 PRK06467 dihydrolipoamide dehy 100.0 2E-31 4.4E-36 264.9 20.8 304 33-412 3-337 (471)
29 PRK06292 dihydrolipoamide dehy 100.0 1.1E-31 2.4E-36 267.4 19.0 307 33-412 2-331 (460)
30 PRK14727 putative mercuric red 100.0 4.2E-31 9.2E-36 263.3 22.2 330 32-437 14-370 (479)
31 PTZ00052 thioredoxin reductase 100.0 1.9E-31 4.2E-36 266.1 19.5 331 33-437 4-366 (499)
32 PRK07845 flavoprotein disulfid 100.0 1.2E-30 2.6E-35 259.2 24.9 307 34-412 1-337 (466)
33 PRK04965 NADH:flavorubredoxin 100.0 8.1E-31 1.7E-35 254.4 21.8 281 34-413 2-303 (377)
34 PRK13748 putative mercuric red 100.0 6E-31 1.3E-35 268.5 21.8 328 33-437 97-452 (561)
35 PTZ00318 NADH dehydrogenase-li 100.0 1.9E-31 4.1E-36 262.0 17.2 295 30-415 6-349 (424)
36 PTZ00058 glutathione reductase 100.0 8.7E-31 1.9E-35 262.0 21.6 332 31-437 45-457 (561)
37 TIGR01316 gltA glutamate synth 100.0 5.2E-31 1.1E-35 260.1 19.0 275 31-413 130-449 (449)
38 PRK09564 coenzyme A disulfide 100.0 4.8E-31 1E-35 261.9 18.7 289 36-412 2-317 (444)
39 PRK12831 putative oxidoreducta 100.0 5.6E-31 1.2E-35 260.3 18.3 297 30-414 136-461 (464)
40 PRK07846 mycothione reductase; 100.0 1.2E-30 2.6E-35 257.7 20.3 297 34-412 1-325 (451)
41 PRK14989 nitrite reductase sub 100.0 8.9E-31 1.9E-35 273.3 19.3 285 35-412 4-310 (847)
42 PRK07251 pyridine nucleotide-d 100.0 3.4E-30 7.4E-35 254.9 22.4 292 34-412 3-316 (438)
43 TIGR01438 TGR thioredoxin and 100.0 2.3E-30 5E-35 257.2 21.2 328 34-436 2-368 (484)
44 PRK06115 dihydrolipoamide dehy 100.0 7.8E-30 1.7E-34 253.4 24.8 305 34-412 3-338 (466)
45 TIGR01350 lipoamide_DH dihydro 100.0 3.6E-30 7.9E-35 256.7 21.3 304 34-413 1-333 (461)
46 PRK06327 dihydrolipoamide dehy 100.0 2.3E-30 4.9E-35 258.0 19.3 306 33-412 3-347 (475)
47 PRK05976 dihydrolipoamide dehy 100.0 1.2E-29 2.6E-34 253.0 24.2 309 33-412 3-343 (472)
48 PRK09853 putative selenate red 100.0 7.7E-30 1.7E-34 264.3 21.6 289 32-414 537-842 (1019)
49 PRK12779 putative bifunctional 100.0 8.5E-30 1.8E-34 268.3 22.2 293 32-414 304-627 (944)
50 PRK11749 dihydropyrimidine deh 100.0 2.9E-30 6.2E-35 256.3 17.6 278 31-415 137-453 (457)
51 PRK09754 phenylpropionate diox 100.0 5.8E-30 1.3E-34 249.7 16.8 283 35-413 4-310 (396)
52 KOG0405 Pyridine nucleotide-di 100.0 1.9E-29 4.2E-34 224.4 17.4 334 30-437 16-376 (478)
53 TIGR02374 nitri_red_nirB nitri 100.0 1.1E-29 2.4E-34 265.6 18.6 281 37-413 1-302 (785)
54 PTZ00153 lipoamide dehydrogena 100.0 3.7E-29 8.1E-34 253.4 19.4 306 34-412 116-495 (659)
55 PRK06912 acoL dihydrolipoamide 100.0 3.3E-29 7.3E-34 248.7 18.7 300 36-412 2-330 (458)
56 TIGR03452 mycothione_red mycot 100.0 4E-29 8.6E-34 247.2 18.9 297 34-412 2-328 (452)
57 PRK12778 putative bifunctional 100.0 3.7E-29 8.1E-34 261.9 17.9 293 31-414 428-750 (752)
58 TIGR03169 Nterm_to_SelD pyridi 100.0 4.8E-29 1E-33 241.3 16.6 280 36-415 1-312 (364)
59 PRK12770 putative glutamate sy 100.0 6.8E-28 1.5E-32 231.5 21.7 286 34-414 18-350 (352)
60 TIGR03315 Se_ygfK putative sel 100.0 2E-28 4.3E-33 255.2 19.3 289 32-413 535-839 (1012)
61 PRK12814 putative NADPH-depend 100.0 3.5E-28 7.6E-33 249.7 19.9 293 32-415 191-502 (652)
62 PF13738 Pyr_redox_3: Pyridine 100.0 9.4E-29 2E-33 219.3 13.2 189 38-237 1-202 (203)
63 PRK12775 putative trifunctiona 100.0 5.7E-28 1.2E-32 256.8 21.4 295 32-415 428-756 (1006)
64 PRK12769 putative oxidoreducta 100.0 5.9E-28 1.3E-32 249.1 20.6 293 32-414 325-652 (654)
65 PRK12810 gltD glutamate syntha 100.0 5.2E-28 1.1E-32 240.5 18.2 288 32-415 141-466 (471)
66 TIGR01318 gltD_gamma_fam gluta 100.0 6.5E-27 1.4E-31 231.8 22.5 292 32-413 139-465 (467)
67 COG3634 AhpF Alkyl hydroperoxi 100.0 3E-27 6.5E-32 210.5 16.0 289 30-413 207-514 (520)
68 PRK12809 putative oxidoreducta 99.9 1E-26 2.3E-31 238.8 20.2 295 32-415 308-636 (639)
69 KOG4716 Thioredoxin reductase 99.9 5.1E-26 1.1E-30 201.9 17.5 329 28-412 13-365 (503)
70 KOG1335 Dihydrolipoamide dehyd 99.9 2.8E-26 6.2E-31 206.9 15.6 329 33-435 38-399 (506)
71 TIGR03385 CoA_CoA_reduc CoA-di 99.9 4E-26 8.7E-31 225.4 14.3 274 48-412 1-304 (427)
72 PRK13984 putative oxidoreducta 99.9 7.4E-26 1.6E-30 232.3 15.9 292 31-414 280-602 (604)
73 KOG1336 Monodehydroascorbate/f 99.9 1.3E-25 2.8E-30 209.9 16.0 261 36-394 76-352 (478)
74 TIGR01317 GOGAT_sm_gam glutama 99.9 4.6E-25 9.9E-30 219.4 20.5 307 32-415 141-480 (485)
75 PLN02852 ferredoxin-NADP+ redu 99.9 1.7E-24 3.7E-29 212.0 22.6 332 27-415 19-423 (491)
76 PRK12771 putative glutamate sy 99.9 3.7E-25 8.1E-30 224.9 17.4 276 31-415 134-445 (564)
77 KOG0399 Glutamate synthase [Am 99.9 1.8E-25 3.9E-30 223.3 12.6 330 14-413 1764-2119(2142)
78 COG1251 NirB NAD(P)H-nitrite r 99.9 1.5E-24 3.3E-29 211.9 13.5 306 35-435 4-328 (793)
79 PF13434 K_oxygenase: L-lysine 99.9 2.4E-24 5.2E-29 203.6 13.6 204 34-244 2-233 (341)
80 TIGR01372 soxA sarcosine oxida 99.9 3.9E-23 8.5E-28 221.3 23.4 279 33-414 162-472 (985)
81 COG3486 IucD Lysine/ornithine 99.9 1.6E-22 3.4E-27 185.5 20.6 349 32-413 3-414 (436)
82 KOG2495 NADH-dehydrogenase (ub 99.9 2.1E-22 4.6E-27 185.0 17.4 299 28-413 49-396 (491)
83 COG0493 GltD NADPH-dependent g 99.8 1.3E-20 2.7E-25 183.0 10.8 314 15-413 103-450 (457)
84 COG4529 Uncharacterized protei 99.8 1.4E-16 3.1E-21 150.8 24.2 366 34-410 1-459 (474)
85 COG0446 HcaD Uncharacterized N 99.7 1.8E-17 4E-22 163.4 15.0 277 37-411 1-309 (415)
86 PRK06567 putative bifunctional 99.7 2.3E-17 4.9E-22 169.8 15.7 169 31-223 380-571 (1028)
87 PTZ00188 adrenodoxin reductase 99.7 1.7E-16 3.8E-21 153.1 20.7 163 33-235 38-251 (506)
88 KOG1800 Ferredoxin/adrenodoxin 99.7 1.7E-16 3.8E-21 144.0 17.4 150 31-223 17-180 (468)
89 KOG1346 Programmed cell death 99.7 1.3E-17 2.8E-22 152.5 8.8 313 32-424 176-531 (659)
90 PRK09897 hypothetical protein; 99.7 2.5E-15 5.5E-20 149.4 22.7 189 34-236 1-246 (534)
91 PF07992 Pyr_redox_2: Pyridine 99.6 6.6E-16 1.4E-20 136.6 7.0 121 36-181 1-130 (201)
92 KOG2755 Oxidoreductase [Genera 99.6 3.4E-14 7.3E-19 122.9 11.0 292 37-393 2-321 (334)
93 COG1148 HdrA Heterodisulfide r 99.5 4E-13 8.6E-18 126.0 18.2 78 337-414 461-545 (622)
94 COG2081 Predicted flavoprotein 99.5 3.8E-13 8.3E-18 124.6 12.2 135 33-174 2-170 (408)
95 PF03486 HI0933_like: HI0933-l 99.4 2.6E-12 5.7E-17 124.2 11.4 134 35-174 1-169 (409)
96 PF13454 NAD_binding_9: FAD-NA 99.3 5.8E-11 1.3E-15 100.0 12.5 125 38-169 1-155 (156)
97 PRK05329 anaerobic glycerol-3- 99.3 1.3E-10 2.9E-15 112.8 15.4 35 33-67 1-35 (422)
98 TIGR02032 GG-red-SF geranylger 99.2 8.1E-11 1.8E-15 110.5 12.4 131 35-171 1-148 (295)
99 KOG3851 Sulfide:quinone oxidor 99.2 4.5E-10 9.9E-15 100.3 16.0 74 338-414 282-361 (446)
100 TIGR02023 BchP-ChlP geranylger 99.2 2E-10 4.3E-15 112.2 14.9 135 35-172 1-156 (388)
101 PRK04176 ribulose-1,5-biphosph 99.2 1.8E-10 3.9E-15 105.0 13.0 140 31-171 22-173 (257)
102 TIGR00292 thiazole biosynthesi 99.2 3.4E-10 7.3E-15 102.9 13.4 139 32-170 19-169 (254)
103 PLN02463 lycopene beta cyclase 99.2 2.8E-10 6.2E-15 111.8 12.6 134 30-172 24-170 (447)
104 PRK08244 hypothetical protein; 99.2 8.4E-10 1.8E-14 111.2 16.3 135 34-172 2-160 (493)
105 PRK10157 putative oxidoreducta 99.2 7E-10 1.5E-14 109.4 15.0 132 33-171 4-164 (428)
106 PF01494 FAD_binding_3: FAD bi 99.1 2.3E-10 5E-15 110.3 10.9 135 35-172 2-173 (356)
107 PRK06847 hypothetical protein; 99.1 1.1E-09 2.3E-14 106.7 15.0 135 33-174 3-166 (375)
108 PRK06834 hypothetical protein; 99.1 1.2E-09 2.6E-14 109.4 15.2 132 34-172 3-157 (488)
109 COG1635 THI4 Ribulose 1,5-bisp 99.1 7.4E-10 1.6E-14 94.1 10.3 139 31-169 27-176 (262)
110 PRK06184 hypothetical protein; 99.1 2.4E-09 5.2E-14 108.2 15.5 135 34-172 3-169 (502)
111 PRK08013 oxidoreductase; Provi 99.1 1.3E-09 2.9E-14 106.8 13.2 133 34-173 3-170 (400)
112 PRK06183 mhpA 3-(3-hydroxyphen 99.1 2.4E-09 5.2E-14 109.0 15.4 139 32-173 8-176 (538)
113 PRK07333 2-octaprenyl-6-methox 99.1 1.4E-09 2.9E-14 107.0 12.8 132 34-172 1-168 (403)
114 PRK10015 oxidoreductase; Provi 99.1 2.9E-09 6.3E-14 105.0 15.1 131 34-171 5-164 (429)
115 COG0644 FixC Dehydrogenases (f 99.1 1.1E-09 2.4E-14 107.1 11.8 133 33-171 2-152 (396)
116 PRK08773 2-octaprenyl-3-methyl 99.1 1.8E-09 4E-14 105.6 13.4 134 32-172 4-170 (392)
117 PRK05714 2-octaprenyl-3-methyl 99.1 1.1E-09 2.3E-14 107.8 11.5 134 33-173 1-170 (405)
118 COG0654 UbiH 2-polyprenyl-6-me 99.0 2.3E-09 5.1E-14 104.5 13.4 134 34-174 2-165 (387)
119 PRK07190 hypothetical protein; 99.0 3.3E-09 7.1E-14 106.1 14.6 132 34-172 5-166 (487)
120 TIGR01790 carotene-cycl lycope 99.0 2.5E-09 5.5E-14 104.6 12.9 129 36-171 1-141 (388)
121 PLN02697 lycopene epsilon cycl 99.0 4.6E-09 1E-13 105.0 14.3 132 31-171 105-248 (529)
122 PF05834 Lycopene_cycl: Lycope 99.0 3.6E-09 7.9E-14 102.5 13.0 141 36-191 1-160 (374)
123 PRK06617 2-octaprenyl-6-methox 99.0 3.6E-09 7.7E-14 102.8 13.0 132 34-174 1-163 (374)
124 PRK07364 2-octaprenyl-6-methox 99.0 4.3E-09 9.3E-14 103.9 13.4 138 32-173 16-183 (415)
125 PRK06126 hypothetical protein; 99.0 1.2E-08 2.5E-13 104.3 16.8 139 32-172 5-189 (545)
126 COG3380 Predicted NAD/FAD-depe 99.0 2.6E-09 5.5E-14 93.7 9.9 123 35-168 2-157 (331)
127 PRK11445 putative oxidoreducta 99.0 7.4E-09 1.6E-13 99.6 14.4 133 34-173 1-159 (351)
128 PLN00093 geranylgeranyl diphos 99.0 5.5E-09 1.2E-13 103.3 13.5 144 28-172 33-200 (450)
129 PRK07608 ubiquinone biosynthes 99.0 5.2E-09 1.1E-13 102.4 12.8 132 33-172 4-168 (388)
130 PRK07494 2-octaprenyl-6-methox 99.0 4.7E-09 1E-13 102.6 12.5 132 34-172 7-168 (388)
131 TIGR00275 flavoprotein, HI0933 99.0 5.5E-09 1.2E-13 102.1 12.8 126 38-173 1-162 (400)
132 PRK09126 hypothetical protein; 99.0 6.9E-09 1.5E-13 101.6 13.5 132 34-172 3-168 (392)
133 PRK08020 ubiF 2-octaprenyl-3-m 99.0 4.6E-09 9.9E-14 102.9 12.1 132 34-172 5-170 (391)
134 PF01266 DAO: FAD dependent ox 99.0 2.4E-09 5.2E-14 103.3 9.9 60 105-172 144-204 (358)
135 TIGR02028 ChlP geranylgeranyl 99.0 1.5E-08 3.3E-13 99.0 15.2 137 35-172 1-161 (398)
136 PRK08163 salicylate hydroxylas 99.0 4E-09 8.6E-14 103.5 11.2 133 34-173 4-168 (396)
137 TIGR01988 Ubi-OHases Ubiquinon 99.0 5.2E-09 1.1E-13 102.2 11.8 130 36-172 1-164 (385)
138 PRK06185 hypothetical protein; 99.0 8.2E-09 1.8E-13 101.6 13.2 136 33-172 5-170 (407)
139 PRK06753 hypothetical protein; 99.0 8.6E-09 1.9E-13 100.2 13.0 129 36-174 2-155 (373)
140 PF01946 Thi4: Thi4 family; PD 98.9 1.1E-08 2.3E-13 87.8 11.4 139 31-170 14-164 (230)
141 TIGR01984 UbiH 2-polyprenyl-6- 98.9 5.9E-09 1.3E-13 101.8 11.4 130 36-172 1-163 (382)
142 PRK07538 hypothetical protein; 98.9 5.4E-08 1.2E-12 95.9 17.8 135 36-173 2-167 (413)
143 PRK07045 putative monooxygenas 98.9 1.9E-08 4.2E-13 98.3 14.5 135 34-173 5-167 (388)
144 PRK07588 hypothetical protein; 98.9 8.7E-09 1.9E-13 100.8 12.0 131 36-174 2-161 (391)
145 TIGR01989 COQ6 Ubiquinone bios 98.9 9.2E-09 2E-13 102.0 12.2 135 35-174 1-186 (437)
146 PRK08243 4-hydroxybenzoate 3-m 98.9 1.7E-08 3.6E-13 98.8 13.7 137 34-174 2-166 (392)
147 TIGR01377 soxA_mon sarcosine o 98.9 1.2E-08 2.6E-13 99.5 12.5 61 105-173 142-202 (380)
148 PRK11259 solA N-methyltryptoph 98.9 1.5E-08 3.3E-13 98.6 13.1 65 104-176 145-209 (376)
149 PRK13800 putative oxidoreducta 98.9 2.6E-08 5.5E-13 107.0 15.6 36 33-68 12-47 (897)
150 PLN02661 Putative thiazole syn 98.9 1.1E-08 2.3E-13 95.7 11.1 136 32-169 90-242 (357)
151 PRK13369 glycerol-3-phosphate 98.9 3E-08 6.5E-13 99.9 15.3 63 107-172 154-216 (502)
152 PRK08132 FAD-dependent oxidore 98.9 4.3E-08 9.3E-13 100.1 16.5 137 32-172 21-186 (547)
153 PRK05868 hypothetical protein; 98.9 3.1E-08 6.8E-13 96.0 14.5 133 34-174 1-163 (372)
154 PRK08850 2-octaprenyl-6-methox 98.9 1.6E-08 3.5E-13 99.4 12.6 133 34-173 4-170 (405)
155 KOG2820 FAD-dependent oxidored 98.9 1.3E-08 2.8E-13 92.1 10.6 143 30-177 3-218 (399)
156 PRK06996 hypothetical protein; 98.9 2E-08 4.3E-13 98.5 13.0 134 32-169 9-172 (398)
157 PRK11728 hydroxyglutarate oxid 98.9 1.8E-08 4E-13 98.5 12.6 58 106-171 147-204 (393)
158 PRK05732 2-octaprenyl-6-methox 98.9 2.4E-08 5.3E-13 97.9 12.9 133 33-172 2-170 (395)
159 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 3.4E-08 7.4E-13 96.4 13.6 138 33-174 1-166 (390)
160 PRK08294 phenol 2-monooxygenas 98.9 6.5E-08 1.4E-12 99.8 16.2 143 32-174 30-213 (634)
161 COG0029 NadB Aspartate oxidase 98.9 2.1E-08 4.7E-13 95.6 11.5 132 36-171 9-196 (518)
162 PRK12266 glpD glycerol-3-phosp 98.9 6.8E-08 1.5E-12 97.3 15.8 63 108-172 155-217 (508)
163 PRK08849 2-octaprenyl-3-methyl 98.8 3.4E-08 7.3E-13 96.4 13.1 134 34-174 3-170 (384)
164 PRK07236 hypothetical protein; 98.8 3.5E-08 7.7E-13 96.3 13.3 133 33-174 5-157 (386)
165 PRK12409 D-amino acid dehydrog 98.8 5.4E-08 1.2E-12 95.9 13.8 65 106-172 195-259 (410)
166 PRK11101 glpA sn-glycerol-3-ph 98.8 4.8E-08 1E-12 99.3 13.8 139 33-172 5-212 (546)
167 PF00070 Pyr_redox: Pyridine n 98.8 4.5E-08 9.7E-13 72.3 9.8 79 36-149 1-79 (80)
168 PRK05192 tRNA uridine 5-carbox 98.8 3.1E-08 6.6E-13 99.3 11.5 131 33-170 3-156 (618)
169 PRK06475 salicylate hydroxylas 98.8 7.2E-08 1.6E-12 94.6 13.6 136 35-174 3-170 (400)
170 TIGR01813 flavo_cyto_c flavocy 98.8 1.8E-07 3.9E-12 93.0 16.2 136 36-172 1-193 (439)
171 TIGR03329 Phn_aa_oxid putative 98.8 4E-08 8.7E-13 98.1 11.5 62 105-175 180-241 (460)
172 COG0579 Predicted dehydrogenas 98.8 7.5E-08 1.6E-12 92.6 12.6 136 33-173 2-213 (429)
173 TIGR03364 HpnW_proposed FAD de 98.8 5.5E-08 1.2E-12 94.3 11.7 34 35-68 1-34 (365)
174 PRK06481 fumarate reductase fl 98.8 2.1E-07 4.6E-12 93.8 16.3 137 33-172 60-252 (506)
175 PF12831 FAD_oxidored: FAD dep 98.8 5.9E-09 1.3E-13 102.8 4.4 131 36-169 1-148 (428)
176 TIGR03219 salicylate_mono sali 98.8 8.2E-08 1.8E-12 94.7 12.4 128 36-172 2-160 (414)
177 PRK13339 malate:quinone oxidor 98.7 1.8E-07 4E-12 92.8 14.5 66 106-172 182-248 (497)
178 COG1053 SdhA Succinate dehydro 98.7 1.5E-07 3.2E-12 94.8 13.8 140 32-171 4-202 (562)
179 TIGR01373 soxB sarcosine oxida 98.7 1.1E-07 2.5E-12 93.5 12.9 62 105-172 180-241 (407)
180 PTZ00383 malate:quinone oxidor 98.7 9.8E-08 2.1E-12 95.0 11.5 61 105-172 208-274 (497)
181 PF00890 FAD_binding_2: FAD bi 98.7 2.2E-07 4.8E-12 91.8 14.1 135 36-172 1-204 (417)
182 PLN02464 glycerol-3-phosphate 98.7 2.3E-07 5E-12 95.5 14.3 67 106-172 230-297 (627)
183 PLN02985 squalene monooxygenas 98.7 3.5E-07 7.6E-12 92.0 15.0 141 30-173 39-210 (514)
184 PRK08274 tricarballylate dehyd 98.7 4.6E-07 1E-11 90.8 15.9 137 33-171 3-192 (466)
185 TIGR01320 mal_quin_oxido malat 98.7 2.8E-07 6E-12 92.0 13.8 66 106-172 176-241 (483)
186 PRK01747 mnmC bifunctional tRN 98.7 3.3E-07 7.2E-12 95.6 14.6 61 105-173 405-465 (662)
187 TIGR01789 lycopene_cycl lycope 98.7 1.6E-07 3.5E-12 90.7 11.2 139 36-191 1-156 (370)
188 KOG2415 Electron transfer flav 98.7 2.7E-07 5.9E-12 85.8 11.6 143 28-171 70-256 (621)
189 COG0578 GlpA Glycerol-3-phosph 98.6 6E-07 1.3E-11 88.3 14.6 138 33-172 11-226 (532)
190 PRK07804 L-aspartate oxidase; 98.6 6.7E-07 1.5E-11 90.9 14.7 140 32-172 14-211 (541)
191 PF13450 NAD_binding_8: NAD(P) 98.6 6.5E-08 1.4E-12 68.6 5.1 47 39-85 1-47 (68)
192 PF01134 GIDA: Glucose inhibit 98.6 3.5E-07 7.5E-12 87.0 11.5 127 36-169 1-150 (392)
193 PRK08958 sdhA succinate dehydr 98.6 6.7E-07 1.5E-11 91.6 14.4 139 34-172 7-207 (588)
194 PRK07121 hypothetical protein; 98.6 1.5E-06 3.3E-11 87.6 16.7 63 107-171 176-239 (492)
195 PRK08401 L-aspartate oxidase; 98.6 5.1E-07 1.1E-11 90.1 13.2 130 34-172 1-176 (466)
196 COG1249 Lpd Pyruvate/2-oxoglut 98.6 7.4E-07 1.6E-11 87.3 13.6 105 32-176 171-275 (454)
197 PF00070 Pyr_redox: Pyridine n 98.6 5.4E-08 1.2E-12 71.8 4.3 33 204-236 1-33 (80)
198 PTZ00139 Succinate dehydrogena 98.6 9.5E-07 2E-11 91.0 14.8 140 33-172 28-230 (617)
199 TIGR01812 sdhA_frdA_Gneg succi 98.6 1.4E-06 2.9E-11 89.5 15.8 135 36-172 1-192 (566)
200 PRK07057 sdhA succinate dehydr 98.6 1.9E-06 4.1E-11 88.4 16.6 140 33-172 11-212 (591)
201 TIGR00136 gidA glucose-inhibit 98.6 8.3E-07 1.8E-11 89.0 13.5 131 35-171 1-154 (617)
202 PRK05976 dihydrolipoamide dehy 98.6 1E-06 2.3E-11 88.3 14.4 105 34-176 180-284 (472)
203 PRK06452 sdhA succinate dehydr 98.6 1.6E-06 3.4E-11 88.6 15.9 137 33-171 4-198 (566)
204 PRK08275 putative oxidoreducta 98.6 2E-06 4.3E-11 87.8 16.5 140 33-172 8-201 (554)
205 COG2509 Uncharacterized FAD-de 98.6 3.4E-06 7.4E-11 79.9 16.5 60 107-172 172-231 (486)
206 PLN00128 Succinate dehydrogena 98.6 6.5E-07 1.4E-11 92.2 12.8 140 33-172 49-251 (635)
207 PRK07251 pyridine nucleotide-d 98.6 9.3E-07 2E-11 87.8 13.4 99 34-175 157-255 (438)
208 PRK07573 sdhA succinate dehydr 98.6 1.5E-06 3.3E-11 89.8 15.3 38 32-69 33-70 (640)
209 PRK07803 sdhA succinate dehydr 98.6 1.9E-06 4.1E-11 89.0 16.0 38 33-70 7-44 (626)
210 PRK04965 NADH:flavorubredoxin 98.6 7.8E-07 1.7E-11 86.6 12.5 98 33-169 140-237 (377)
211 PLN02927 antheraxanthin epoxid 98.6 9.9E-07 2.1E-11 90.1 13.6 132 32-173 79-250 (668)
212 PRK09078 sdhA succinate dehydr 98.5 2E-06 4.4E-11 88.3 15.9 140 33-172 11-213 (598)
213 PRK06854 adenylylsulfate reduc 98.5 1.8E-06 3.8E-11 88.9 15.5 139 33-172 10-196 (608)
214 PRK05945 sdhA succinate dehydr 98.5 1.2E-06 2.7E-11 89.7 13.7 137 34-172 3-198 (575)
215 PRK05257 malate:quinone oxidor 98.5 8.9E-07 1.9E-11 88.5 12.2 65 108-173 183-248 (494)
216 TIGR00551 nadB L-aspartate oxi 98.5 2E-06 4.3E-11 86.5 14.6 133 35-172 3-190 (488)
217 PRK06263 sdhA succinate dehydr 98.5 2.3E-06 4.9E-11 87.2 15.2 138 33-171 6-197 (543)
218 TIGR01350 lipoamide_DH dihydro 98.5 1.6E-06 3.5E-11 86.8 13.8 103 34-176 170-272 (461)
219 PRK06416 dihydrolipoamide dehy 98.5 1.9E-06 4.2E-11 86.2 14.2 103 34-175 172-274 (462)
220 PF06039 Mqo: Malate:quinone o 98.5 1.6E-06 3.5E-11 82.8 12.7 65 108-173 181-246 (488)
221 PRK09754 phenylpropionate diox 98.5 1E-06 2.2E-11 86.3 11.9 96 34-169 144-239 (396)
222 PRK08641 sdhA succinate dehydr 98.5 4.4E-06 9.6E-11 85.7 16.6 37 34-70 3-39 (589)
223 PRK06069 sdhA succinate dehydr 98.5 3.1E-06 6.7E-11 86.9 15.1 138 33-172 4-201 (577)
224 PRK08205 sdhA succinate dehydr 98.5 4.5E-06 9.7E-11 85.7 16.2 67 106-172 138-207 (583)
225 PRK06912 acoL dihydrolipoamide 98.5 2.8E-06 6E-11 84.9 14.0 101 34-175 170-270 (458)
226 PRK13977 myosin-cross-reactive 98.5 5.4E-06 1.2E-10 82.7 15.6 44 30-73 18-65 (576)
227 PRK00711 D-amino acid dehydrog 98.5 2.7E-06 5.8E-11 84.1 13.5 59 106-172 199-258 (416)
228 COG0665 DadA Glycine/D-amino a 98.4 1.1E-06 2.5E-11 85.8 10.8 60 105-172 153-213 (387)
229 PRK05249 soluble pyridine nucl 98.4 2.3E-06 5E-11 85.7 13.1 96 34-169 175-270 (461)
230 PRK06115 dihydrolipoamide dehy 98.4 3.7E-06 7.9E-11 84.1 14.4 105 34-175 174-278 (466)
231 PLN02815 L-aspartate oxidase 98.4 3.9E-06 8.5E-11 85.7 14.7 140 32-172 27-223 (594)
232 PRK06327 dihydrolipoamide dehy 98.4 3.7E-06 7.9E-11 84.4 14.2 105 34-176 183-287 (475)
233 COG1252 Ndh NADH dehydrogenase 98.4 1.8E-06 3.9E-11 82.6 11.2 100 35-177 156-268 (405)
234 COG2081 Predicted flavoprotein 98.4 7.8E-07 1.7E-11 83.2 8.3 150 203-353 4-170 (408)
235 PRK06175 L-aspartate oxidase; 98.4 4.2E-06 9.1E-11 82.7 14.0 134 34-171 4-189 (433)
236 KOG1335 Dihydrolipoamide dehyd 98.4 4.3E-06 9.3E-11 77.3 12.8 149 34-225 211-367 (506)
237 PRK06116 glutathione reductase 98.4 3E-06 6.6E-11 84.5 13.1 102 34-176 167-268 (450)
238 TIGR02053 MerA mercuric reduct 98.4 4.3E-06 9.2E-11 83.8 14.2 104 34-176 166-269 (463)
239 PRK07818 dihydrolipoamide dehy 98.4 4.7E-06 1E-10 83.5 14.5 104 34-175 172-275 (466)
240 TIGR01811 sdhA_Bsu succinate d 98.4 4.5E-06 9.9E-11 85.7 14.5 33 37-69 1-33 (603)
241 PRK12839 hypothetical protein; 98.4 8.1E-06 1.7E-10 83.4 16.1 43 30-72 4-46 (572)
242 TIGR01176 fum_red_Fp fumarate 98.4 7.8E-06 1.7E-10 83.6 15.9 137 34-172 3-196 (580)
243 PRK06370 mercuric reductase; V 98.4 5.3E-06 1.1E-10 83.1 14.3 103 34-175 171-273 (463)
244 PRK08071 L-aspartate oxidase; 98.4 6.3E-06 1.4E-10 83.2 14.7 134 34-172 3-191 (510)
245 PF04820 Trp_halogenase: Trypt 98.4 6.6E-07 1.4E-11 88.7 7.5 60 105-170 151-210 (454)
246 PRK09231 fumarate reductase fl 98.4 6.5E-06 1.4E-10 84.4 14.8 138 33-172 3-197 (582)
247 TIGR01424 gluta_reduc_2 glutat 98.4 4.1E-06 8.9E-11 83.4 13.1 99 34-174 166-264 (446)
248 PRK08626 fumarate reductase fl 98.4 7.3E-06 1.6E-10 85.0 15.3 65 107-172 157-221 (657)
249 PRK07395 L-aspartate oxidase; 98.4 3.4E-06 7.3E-11 85.8 12.3 143 27-172 2-198 (553)
250 PRK14694 putative mercuric red 98.4 5.1E-06 1.1E-10 83.3 12.9 98 34-175 178-275 (468)
251 PTZ00367 squalene epoxidase; P 98.4 2.7E-06 5.9E-11 86.2 10.9 36 32-67 31-66 (567)
252 PRK12835 3-ketosteroid-delta-1 98.3 1.5E-05 3.2E-10 81.8 16.2 39 33-71 10-48 (584)
253 PRK07845 flavoprotein disulfid 98.3 5.5E-06 1.2E-10 82.9 12.8 99 35-175 178-276 (466)
254 PLN02507 glutathione reductase 98.3 6.1E-06 1.3E-10 83.0 13.0 100 34-175 203-302 (499)
255 PRK07846 mycothione reductase; 98.3 5.4E-06 1.2E-10 82.5 12.5 100 34-176 166-265 (451)
256 PRK14727 putative mercuric red 98.3 7.1E-06 1.5E-10 82.4 13.4 94 34-169 188-281 (479)
257 PRK09564 coenzyme A disulfide 98.3 5.5E-06 1.2E-10 82.5 12.5 96 34-169 149-244 (444)
258 PRK12842 putative succinate de 98.3 1.1E-05 2.4E-10 82.7 14.9 39 33-71 8-46 (574)
259 PRK09077 L-aspartate oxidase; 98.3 1.5E-05 3.2E-10 81.1 15.3 139 33-172 7-208 (536)
260 PRK08010 pyridine nucleotide-d 98.3 6.2E-06 1.3E-10 82.0 12.3 98 34-174 158-255 (441)
261 PRK06134 putative FAD-binding 98.3 2.8E-05 6E-10 79.9 17.0 41 31-71 9-49 (581)
262 PRK06467 dihydrolipoamide dehy 98.3 1.1E-05 2.3E-10 80.9 13.6 102 35-175 175-276 (471)
263 TIGR01421 gluta_reduc_1 glutat 98.3 1.1E-05 2.4E-10 80.2 13.1 102 34-175 166-267 (450)
264 PRK12845 3-ketosteroid-delta-1 98.3 2.6E-05 5.6E-10 79.5 16.0 40 32-72 14-53 (564)
265 PRK13748 putative mercuric red 98.3 9E-06 1.9E-10 83.5 12.8 98 34-175 270-367 (561)
266 TIGR03452 mycothione_red mycot 98.3 1.1E-05 2.4E-10 80.4 12.9 99 34-175 169-267 (452)
267 PTZ00306 NADH-dependent fumara 98.3 2.2E-05 4.8E-10 86.7 16.4 42 31-72 406-447 (1167)
268 TIGR03385 CoA_CoA_reduc CoA-di 98.3 8.3E-06 1.8E-10 80.8 11.8 95 34-169 137-231 (427)
269 PRK08255 salicylyl-CoA 5-hydro 98.3 2.2E-06 4.9E-11 90.6 8.1 119 36-173 2-143 (765)
270 PRK12834 putative FAD-binding 98.2 1.9E-05 4.2E-10 80.6 14.3 39 33-71 3-43 (549)
271 PRK13512 coenzyme A disulfide 98.2 6E-06 1.3E-10 81.9 10.4 96 34-175 148-243 (438)
272 PTZ00052 thioredoxin reductase 98.2 1.4E-05 3.1E-10 80.5 12.8 99 34-175 182-280 (499)
273 TIGR01438 TGR thioredoxin and 98.2 1.5E-05 3.4E-10 79.8 13.1 102 34-175 180-281 (484)
274 PRK07843 3-ketosteroid-delta-1 98.2 4.8E-05 1E-09 77.8 16.5 38 34-71 7-44 (557)
275 PRK06292 dihydrolipoamide dehy 98.2 2.4E-05 5.2E-10 78.4 14.0 103 34-176 169-271 (460)
276 PRK14989 nitrite reductase sub 98.2 1E-05 2.2E-10 86.0 11.6 102 34-174 145-246 (847)
277 TIGR02061 aprA adenosine phosp 98.2 3.3E-05 7.1E-10 79.1 14.9 33 36-68 1-37 (614)
278 TIGR01423 trypano_reduc trypan 98.2 1.8E-05 3.9E-10 79.3 12.8 100 34-174 187-289 (486)
279 COG1233 Phytoene dehydrogenase 98.2 1.9E-06 4.2E-11 86.4 5.9 49 33-81 2-50 (487)
280 PRK12844 3-ketosteroid-delta-1 98.2 5.7E-05 1.2E-09 77.1 16.4 40 33-72 5-44 (557)
281 TIGR02374 nitri_red_nirB nitri 98.2 1.2E-05 2.5E-10 85.4 11.4 101 34-175 140-240 (785)
282 KOG0029 Amine oxidase [Seconda 98.2 2E-06 4.3E-11 85.5 5.2 43 30-72 11-53 (501)
283 PRK12837 3-ketosteroid-delta-1 98.2 7.8E-05 1.7E-09 75.5 16.7 37 34-71 7-43 (513)
284 COG0446 HcaD Uncharacterized N 98.2 1.9E-05 4.1E-10 77.8 12.1 98 34-169 136-235 (415)
285 PTZ00058 glutathione reductase 98.1 2.7E-05 5.8E-10 79.1 12.9 102 34-175 237-338 (561)
286 PRK12843 putative FAD-binding 98.1 8.5E-05 1.8E-09 76.3 16.6 42 32-73 14-55 (578)
287 PTZ00153 lipoamide dehydrogena 98.1 3E-05 6.4E-10 80.0 13.2 107 34-175 312-429 (659)
288 PRK07208 hypothetical protein; 98.1 6.8E-06 1.5E-10 82.8 8.1 44 32-75 2-45 (479)
289 KOG1298 Squalene monooxygenase 98.1 2E-05 4.4E-10 73.0 10.0 140 29-172 40-209 (509)
290 KOG2614 Kynurenine 3-monooxyge 98.1 7.8E-06 1.7E-10 76.8 7.2 37 34-70 2-38 (420)
291 PRK07512 L-aspartate oxidase; 98.1 5.7E-05 1.2E-09 76.4 13.2 135 32-172 7-198 (513)
292 PLN02546 glutathione reductase 98.1 5.2E-05 1.1E-09 77.0 12.8 101 34-175 252-352 (558)
293 COG0445 GidA Flavin-dependent 98.0 9E-06 2E-10 78.8 6.8 131 34-170 4-157 (621)
294 PTZ00318 NADH dehydrogenase-li 98.0 3.1E-05 6.8E-10 76.5 10.9 92 35-170 174-279 (424)
295 KOG2404 Fumarate reductase, fl 98.0 4.7E-05 1E-09 68.9 10.6 135 36-172 11-207 (477)
296 PRK10262 thioredoxin reductase 98.0 6.8E-05 1.5E-09 71.3 11.6 101 33-169 145-246 (321)
297 TIGR02485 CobZ_N-term precorri 98.0 0.00012 2.5E-09 72.8 13.7 61 107-171 122-183 (432)
298 KOG1336 Monodehydroascorbate/f 98.0 4.8E-05 1.1E-09 72.8 10.2 110 31-179 210-319 (478)
299 TIGR00031 UDP-GALP_mutase UDP- 98.0 9.5E-06 2.1E-10 77.9 5.3 40 34-73 1-40 (377)
300 TIGR00292 thiazole biosynthesi 98.0 2E-05 4.4E-10 71.7 7.1 35 201-235 20-54 (254)
301 PRK04176 ribulose-1,5-biphosph 98.0 3.1E-05 6.6E-10 70.8 8.3 35 201-235 24-58 (257)
302 TIGR03140 AhpF alkyl hydropero 97.9 8E-05 1.7E-09 75.5 11.9 99 34-175 352-452 (515)
303 TIGR02730 carot_isom carotene 97.9 1.7E-05 3.7E-10 80.1 6.2 39 35-73 1-39 (493)
304 PRK11883 protoporphyrinogen ox 97.9 1.5E-05 3.3E-10 79.6 5.7 40 36-75 2-43 (451)
305 COG0562 Glf UDP-galactopyranos 97.9 1.6E-05 3.5E-10 72.0 5.2 42 34-75 1-42 (374)
306 TIGR01292 TRX_reduct thioredox 97.9 9.7E-05 2.1E-09 69.3 10.8 96 33-169 140-236 (300)
307 PRK07233 hypothetical protein; 97.9 1.6E-05 3.5E-10 79.0 5.5 38 36-73 1-38 (434)
308 TIGR02733 desat_CrtD C-3',4' d 97.9 2E-05 4.4E-10 79.6 6.2 40 35-74 2-41 (492)
309 KOG2853 Possible oxidoreductas 97.9 0.00016 3.4E-09 66.1 11.0 45 32-76 84-141 (509)
310 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 5.1E-05 1.1E-09 73.7 8.4 36 35-70 1-36 (433)
311 PLN02676 polyamine oxidase 97.9 2.8E-05 6.2E-10 77.9 6.9 49 31-79 23-72 (487)
312 PLN02268 probable polyamine ox 97.9 1.7E-05 3.6E-10 78.9 5.3 38 35-72 1-38 (435)
313 PLN02576 protoporphyrinogen ox 97.9 2.4E-05 5.2E-10 79.2 6.3 38 35-72 13-51 (496)
314 TIGR00562 proto_IX_ox protopor 97.9 2.2E-05 4.7E-10 78.7 6.0 41 34-74 2-46 (462)
315 COG1635 THI4 Ribulose 1,5-bisp 97.8 2.2E-05 4.8E-10 67.3 4.8 37 199-235 27-63 (262)
316 KOG2844 Dimethylglycine dehydr 97.8 6.6E-05 1.4E-09 74.3 8.5 62 104-172 183-244 (856)
317 KOG0042 Glycerol-3-phosphate d 97.8 3.5E-05 7.5E-10 74.5 6.2 46 28-73 61-106 (680)
318 TIGR02734 crtI_fam phytoene de 97.8 2.8E-05 6.1E-10 78.8 5.7 36 37-72 1-36 (502)
319 COG3349 Uncharacterized conser 97.8 2.5E-05 5.4E-10 75.9 4.9 40 36-75 2-44 (485)
320 KOG2665 Predicted FAD-dependen 97.8 0.00016 3.4E-09 65.5 8.9 41 30-70 44-86 (453)
321 PRK15317 alkyl hydroperoxide r 97.7 0.00021 4.6E-09 72.5 11.2 96 33-169 350-447 (517)
322 KOG2495 NADH-dehydrogenase (ub 97.7 5.7E-05 1.2E-09 71.1 6.3 110 26-175 210-333 (491)
323 PRK12416 protoporphyrinogen ox 97.7 3.4E-05 7.4E-10 77.3 5.1 40 34-73 1-46 (463)
324 PF03486 HI0933_like: HI0933-l 97.7 1.2E-05 2.5E-10 78.3 1.6 140 204-353 2-167 (409)
325 TIGR03169 Nterm_to_SelD pyridi 97.7 0.00019 4.1E-09 69.5 10.0 91 34-169 145-241 (364)
326 PRK12770 putative glutamate sy 97.7 0.0002 4.3E-09 69.0 10.0 97 34-169 172-284 (352)
327 PLN02568 polyamine oxidase 97.7 5.8E-05 1.3E-09 76.4 5.9 42 34-75 5-51 (539)
328 PF13434 K_oxygenase: L-lysine 97.7 0.00037 8E-09 66.4 10.8 134 31-169 187-339 (341)
329 COG1232 HemY Protoporphyrinoge 97.7 6.1E-05 1.3E-09 73.3 5.5 40 36-75 2-43 (444)
330 PF01134 GIDA: Glucose inhibit 97.7 4.2E-05 9.1E-10 73.0 4.2 142 204-350 1-150 (392)
331 TIGR02731 phytoene_desat phyto 97.6 5.9E-05 1.3E-09 75.4 5.4 37 36-72 1-37 (453)
332 TIGR01316 gltA glutamate synth 97.6 0.00034 7.4E-09 69.6 10.7 98 34-169 272-385 (449)
333 KOG2852 Possible oxidoreductas 97.6 0.00022 4.8E-09 63.7 8.0 40 32-71 8-53 (380)
334 KOG0685 Flavin-containing amin 97.6 6.9E-05 1.5E-09 71.7 5.2 41 33-73 20-61 (498)
335 PRK05335 tRNA (uracil-5-)-meth 97.6 8E-05 1.7E-09 71.9 5.1 36 34-69 2-37 (436)
336 PLN02529 lysine-specific histo 97.5 0.00011 2.4E-09 76.4 5.4 41 32-72 158-198 (738)
337 PTZ00363 rab-GDP dissociation 97.5 8.7E-05 1.9E-09 73.0 4.5 43 33-75 3-45 (443)
338 COG3573 Predicted oxidoreducta 97.5 0.0015 3.3E-08 59.7 11.8 38 34-71 5-44 (552)
339 COG1231 Monoamine oxidase [Ami 97.5 0.00013 2.7E-09 69.8 4.9 41 32-72 5-45 (450)
340 PLN02661 Putative thiazole syn 97.5 0.00059 1.3E-08 64.3 9.2 36 200-235 90-126 (357)
341 TIGR02462 pyranose_ox pyranose 97.5 0.00013 2.9E-09 73.2 5.2 40 35-74 1-40 (544)
342 PRK12779 putative bifunctional 97.5 0.00016 3.4E-09 77.9 5.9 35 201-235 305-339 (944)
343 TIGR02732 zeta_caro_desat caro 97.5 0.00015 3.2E-09 72.6 5.3 37 36-72 1-37 (474)
344 TIGR03143 AhpF_homolog putativ 97.5 0.00083 1.8E-08 68.7 10.7 97 33-169 142-244 (555)
345 PRK12831 putative oxidoreducta 97.5 0.0017 3.7E-08 64.9 12.7 99 33-169 280-394 (464)
346 KOG2311 NAD/FAD-utilizing prot 97.4 0.00091 2E-08 64.0 9.6 35 32-66 26-60 (679)
347 PLN02612 phytoene desaturase 97.4 0.00016 3.4E-09 74.1 5.1 43 29-71 88-130 (567)
348 PLN02463 lycopene beta cyclase 97.4 0.00046 1E-08 68.2 7.9 135 203-353 29-170 (447)
349 PLN02487 zeta-carotene desatur 97.4 0.00017 3.7E-09 73.2 4.9 42 32-73 73-114 (569)
350 PLN02328 lysine-specific histo 97.4 0.00018 3.8E-09 75.3 5.1 41 32-72 236-276 (808)
351 PRK06847 hypothetical protein; 97.4 0.00045 9.8E-09 67.2 7.4 35 202-236 4-38 (375)
352 PRK06834 hypothetical protein; 97.4 0.0006 1.3E-08 68.6 8.4 34 203-236 4-37 (488)
353 PF07992 Pyr_redox_2: Pyridine 97.4 9.5E-05 2.1E-09 65.0 2.3 32 204-235 1-32 (201)
354 TIGR01789 lycopene_cycl lycope 97.3 0.0003 6.5E-09 68.1 5.6 32 204-235 1-34 (370)
355 PRK09853 putative selenate red 97.3 0.00034 7.5E-09 74.6 6.4 36 200-235 537-572 (1019)
356 COG3075 GlpB Anaerobic glycero 97.3 0.00026 5.6E-09 64.5 4.7 35 33-67 1-35 (421)
357 PF00732 GMC_oxred_N: GMC oxid 97.3 0.00015 3.4E-09 68.0 3.3 34 35-68 1-35 (296)
358 PRK11749 dihydropyrimidine deh 97.3 0.0031 6.8E-08 63.0 12.6 100 33-169 272-385 (457)
359 PF13738 Pyr_redox_3: Pyridine 97.3 0.00023 5E-09 62.7 3.7 30 206-235 1-31 (203)
360 PLN02976 amine oxidase 97.3 0.00034 7.5E-09 76.1 5.3 44 32-75 691-734 (1713)
361 PLN03000 amine oxidase 97.2 0.00044 9.6E-09 72.5 5.7 43 32-74 182-224 (881)
362 PRK12810 gltD glutamate syntha 97.2 0.0031 6.8E-08 63.2 11.4 107 34-169 281-398 (471)
363 PRK01438 murD UDP-N-acetylmura 97.2 0.00041 8.8E-09 69.9 5.0 34 34-67 16-49 (480)
364 PF06100 Strep_67kDa_ant: Stre 97.2 0.0029 6.3E-08 61.7 10.4 40 35-74 3-46 (500)
365 PLN02852 ferredoxin-NADP+ redu 97.2 0.00061 1.3E-08 67.8 6.1 36 201-236 25-62 (491)
366 PRK08773 2-octaprenyl-3-methyl 97.2 0.00093 2E-08 65.4 7.0 34 202-235 6-39 (392)
367 PRK12778 putative bifunctional 97.2 0.0057 1.2E-07 65.1 13.3 98 34-169 570-684 (752)
368 PRK12814 putative NADPH-depend 97.1 0.0082 1.8E-07 62.7 13.6 98 33-169 322-435 (652)
369 PF05834 Lycopene_cycl: Lycope 97.1 0.00093 2E-08 64.9 6.1 134 204-353 1-143 (374)
370 KOG4716 Thioredoxin reductase 97.0 0.0016 3.4E-08 59.7 6.5 100 36-170 200-299 (503)
371 TIGR03315 Se_ygfK putative sel 97.0 0.00097 2.1E-08 71.6 6.1 35 201-235 536-570 (1012)
372 PRK05192 tRNA uridine 5-carbox 97.0 0.002 4.4E-08 65.3 8.0 33 203-235 5-37 (618)
373 PRK07236 hypothetical protein; 97.0 0.0014 2.9E-08 64.1 6.6 36 201-236 5-40 (386)
374 PRK06567 putative bifunctional 97.0 0.0015 3.2E-08 69.3 6.9 36 200-235 381-416 (1028)
375 TIGR01318 gltD_gamma_fam gluta 97.0 0.011 2.4E-07 59.2 12.7 99 33-169 281-396 (467)
376 PRK12769 putative oxidoreducta 96.9 0.012 2.5E-07 61.7 12.9 98 34-169 468-582 (654)
377 PTZ00188 adrenodoxin reductase 96.9 0.0016 3.5E-08 64.1 5.9 36 201-236 38-74 (506)
378 PRK05868 hypothetical protein; 96.9 0.0031 6.6E-08 61.3 7.8 34 203-236 2-35 (372)
379 COG0654 UbiH 2-polyprenyl-6-me 96.9 0.0019 4E-08 63.2 6.3 147 203-354 3-164 (387)
380 PLN02785 Protein HOTHEAD 96.9 0.0012 2.6E-08 67.7 5.0 35 32-67 53-87 (587)
381 TIGR03862 flavo_PP4765 unchara 96.9 0.0056 1.2E-07 58.8 9.2 60 106-173 84-143 (376)
382 KOG3855 Monooxygenase involved 96.9 0.013 2.9E-07 55.4 11.2 39 32-70 34-78 (481)
383 TIGR01790 carotene-cycl lycope 96.9 0.0024 5.2E-08 62.4 6.7 33 204-236 1-33 (388)
384 PRK02106 choline dehydrogenase 96.8 0.0013 2.7E-08 67.6 4.6 35 33-67 4-39 (560)
385 KOG1346 Programmed cell death 96.8 0.0038 8.3E-08 58.8 7.1 101 33-175 346-451 (659)
386 PRK12775 putative trifunctiona 96.8 0.0028 6E-08 69.1 7.2 35 201-235 429-463 (1006)
387 KOG1399 Flavin-containing mono 96.8 0.014 3.1E-07 57.4 11.3 34 202-235 6-39 (448)
388 TIGR03378 glycerol3P_GlpB glyc 96.8 0.0018 3.9E-08 62.8 5.0 33 35-67 1-33 (419)
389 PRK09126 hypothetical protein; 96.8 0.0026 5.6E-08 62.3 6.3 34 203-236 4-37 (392)
390 COG1206 Gid NAD(FAD)-utilizing 96.8 0.0046 9.9E-08 56.6 7.1 35 36-70 5-39 (439)
391 TIGR01372 soxA sarcosine oxida 96.8 0.0092 2E-07 65.4 10.9 95 34-174 317-412 (985)
392 PRK08163 salicylate hydroxylas 96.8 0.0028 6E-08 62.2 6.4 35 202-236 4-38 (396)
393 PRK09897 hypothetical protein; 96.7 0.006 1.3E-07 61.6 8.6 33 203-235 2-36 (534)
394 PF13454 NAD_binding_9: FAD-NA 96.7 0.012 2.6E-07 49.4 9.2 30 206-235 1-35 (156)
395 PRK07333 2-octaprenyl-6-methox 96.7 0.0038 8.3E-08 61.3 7.0 33 204-236 3-37 (403)
396 PRK08849 2-octaprenyl-3-methyl 96.7 0.0047 1E-07 60.3 7.5 33 203-235 4-36 (384)
397 PRK07608 ubiquinone biosynthes 96.7 0.006 1.3E-07 59.6 8.2 34 203-236 6-39 (388)
398 KOG1276 Protoporphyrinogen oxi 96.7 0.0022 4.8E-08 60.8 4.7 42 34-75 11-54 (491)
399 PRK05714 2-octaprenyl-3-methyl 96.7 0.0056 1.2E-07 60.2 7.9 33 203-235 3-35 (405)
400 TIGR01470 cysG_Nterm siroheme 96.7 0.0023 4.9E-08 56.2 4.6 36 200-235 7-42 (205)
401 KOG0405 Pyridine nucleotide-di 96.7 0.0064 1.4E-07 56.1 7.4 97 33-168 188-284 (478)
402 PF01946 Thi4: Thi4 family; PD 96.7 0.00047 1E-08 59.6 0.1 34 202-235 17-50 (230)
403 PLN00093 geranylgeranyl diphos 96.6 0.0072 1.6E-07 60.1 8.3 35 201-235 38-72 (450)
404 PRK06184 hypothetical protein; 96.6 0.0051 1.1E-07 62.3 7.4 34 203-236 4-37 (502)
405 TIGR01988 Ubi-OHases Ubiquinon 96.6 0.0035 7.5E-08 61.1 6.0 33 204-236 1-33 (385)
406 COG2072 TrkA Predicted flavopr 96.6 0.023 5E-07 56.4 11.6 34 202-235 8-42 (443)
407 COG2907 Predicted NAD/FAD-bind 96.6 0.002 4.3E-08 59.4 3.8 40 33-73 7-46 (447)
408 PRK01438 murD UDP-N-acetylmura 96.6 0.004 8.6E-08 62.8 6.3 35 201-235 15-49 (480)
409 PRK10157 putative oxidoreducta 96.6 0.0021 4.6E-08 63.6 4.2 33 203-235 6-38 (428)
410 KOG2960 Protein involved in th 96.6 0.00057 1.2E-08 58.3 0.0 44 32-75 74-120 (328)
411 PF12831 FAD_oxidored: FAD dep 96.6 0.0034 7.3E-08 62.1 5.4 32 204-235 1-32 (428)
412 TIGR00275 flavoprotein, HI0933 96.5 0.0048 1E-07 60.5 6.3 31 206-236 1-31 (400)
413 PRK08244 hypothetical protein; 96.5 0.0073 1.6E-07 61.1 7.4 34 203-236 3-36 (493)
414 PRK07588 hypothetical protein; 96.5 0.0055 1.2E-07 59.9 6.4 33 204-236 2-34 (391)
415 PRK08850 2-octaprenyl-6-methox 96.5 0.0096 2.1E-07 58.6 8.0 32 203-234 5-36 (405)
416 TIGR00136 gidA glucose-inhibit 96.5 0.0089 1.9E-07 60.6 7.7 32 204-235 2-33 (617)
417 PRK05562 precorrin-2 dehydroge 96.5 0.0046 9.9E-08 54.6 5.0 34 200-233 23-56 (223)
418 COG0644 FixC Dehydrogenases (f 96.4 0.0028 6.1E-08 62.1 4.1 34 203-236 4-37 (396)
419 TIGR01984 UbiH 2-polyprenyl-6- 96.4 0.0043 9.4E-08 60.4 5.3 32 204-235 1-33 (382)
420 KOG0399 Glutamate synthase [Am 96.4 0.0039 8.5E-08 65.6 4.8 38 198-235 1781-1818(2142)
421 TIGR01317 GOGAT_sm_gam glutama 96.4 0.054 1.2E-06 54.5 12.9 36 33-68 282-318 (485)
422 PRK08013 oxidoreductase; Provi 96.4 0.0056 1.2E-07 60.1 5.8 34 203-236 4-37 (400)
423 PRK06753 hypothetical protein; 96.4 0.0071 1.5E-07 58.7 6.4 33 204-236 2-34 (373)
424 PRK07045 putative monooxygenas 96.3 0.011 2.5E-07 57.7 7.6 34 203-236 6-39 (388)
425 PRK06617 2-octaprenyl-6-methox 96.3 0.005 1.1E-07 59.9 5.1 32 204-235 3-34 (374)
426 PRK12809 putative oxidoreducta 96.3 0.053 1.1E-06 56.6 12.9 99 33-169 450-565 (639)
427 TIGR02028 ChlP geranylgeranyl 96.3 0.0065 1.4E-07 59.6 5.8 32 204-235 2-33 (398)
428 PRK07364 2-octaprenyl-6-methox 96.3 0.019 4.1E-07 56.7 9.1 34 203-236 19-52 (415)
429 COG4529 Uncharacterized protei 96.3 0.011 2.5E-07 57.3 7.0 34 203-236 2-38 (474)
430 COG2303 BetA Choline dehydroge 96.3 0.0037 8E-08 63.6 3.9 37 31-67 4-40 (542)
431 PRK08020 ubiF 2-octaprenyl-3-m 96.3 0.012 2.7E-07 57.5 7.5 33 203-235 6-38 (391)
432 PRK07190 hypothetical protein; 96.3 0.0084 1.8E-07 60.3 6.4 34 203-236 6-39 (487)
433 TIGR02032 GG-red-SF geranylger 96.3 0.007 1.5E-07 56.5 5.5 32 204-235 2-33 (295)
434 TIGR02023 BchP-ChlP geranylger 96.2 0.0095 2.1E-07 58.2 6.4 31 204-234 2-32 (388)
435 COG1251 NirB NAD(P)H-nitrite r 96.2 0.0079 1.7E-07 61.1 5.8 95 36-169 147-241 (793)
436 TIGR01810 betA choline dehydro 96.2 0.0041 8.9E-08 63.5 3.9 32 36-67 1-33 (532)
437 PRK06718 precorrin-2 dehydroge 96.2 0.0087 1.9E-07 52.5 5.3 34 200-233 8-41 (202)
438 COG0445 GidA Flavin-dependent 96.2 0.012 2.6E-07 57.8 6.5 33 203-235 5-37 (621)
439 COG0492 TrxB Thioredoxin reduc 96.2 0.057 1.2E-06 50.5 10.9 95 32-169 141-236 (305)
440 PLN02172 flavin-containing mon 96.1 0.015 3.1E-07 58.1 7.0 36 32-67 202-237 (461)
441 PLN02697 lycopene epsilon cycl 96.1 0.011 2.5E-07 59.6 6.2 32 203-234 109-140 (529)
442 KOG4254 Phytoene desaturase [C 96.0 0.0052 1.1E-07 58.7 3.2 40 32-71 12-51 (561)
443 PRK10015 oxidoreductase; Provi 96.0 0.0063 1.4E-07 60.2 4.0 34 203-236 6-39 (429)
444 COG1148 HdrA Heterodisulfide r 96.0 0.01 2.2E-07 57.3 5.1 34 202-235 124-157 (622)
445 PRK05329 anaerobic glycerol-3- 96.0 0.053 1.1E-06 53.2 10.1 97 33-169 215-316 (422)
446 PF00743 FMO-like: Flavin-bind 95.9 0.036 7.7E-07 56.2 8.9 33 203-235 2-34 (531)
447 PRK06183 mhpA 3-(3-hydroxyphen 95.8 0.016 3.4E-07 59.4 6.0 35 202-236 10-44 (538)
448 COG3486 IucD Lysine/ornithine 95.8 0.086 1.9E-06 50.1 10.2 48 122-170 292-339 (436)
449 PF04820 Trp_halogenase: Trypt 95.8 0.0073 1.6E-07 60.1 3.3 33 204-236 1-36 (454)
450 TIGR03219 salicylate_mono sali 95.7 0.02 4.3E-07 56.5 6.2 33 204-236 2-35 (414)
451 PRK13984 putative oxidoreducta 95.7 0.11 2.3E-06 54.1 11.8 31 34-64 418-454 (604)
452 PRK07494 2-octaprenyl-6-methox 95.7 0.029 6.2E-07 54.8 7.2 33 203-235 8-40 (388)
453 KOG2311 NAD/FAD-utilizing prot 95.7 0.022 4.8E-07 54.9 5.8 33 203-235 29-61 (679)
454 PF13450 NAD_binding_8: NAD(P) 95.6 0.0086 1.9E-07 42.2 2.3 30 207-236 1-30 (68)
455 PF13241 NAD_binding_7: Putati 95.6 0.008 1.7E-07 46.4 2.3 36 200-235 5-40 (103)
456 PRK05732 2-octaprenyl-6-methox 95.5 0.022 4.7E-07 55.8 5.7 32 203-234 4-38 (395)
457 TIGR01989 COQ6 Ubiquinone bios 95.5 0.029 6.2E-07 55.8 6.3 32 204-235 2-37 (437)
458 PRK12771 putative glutamate sy 95.4 0.13 2.8E-06 53.0 11.1 99 33-169 266-378 (564)
459 PRK14106 murD UDP-N-acetylmura 95.4 0.024 5.2E-07 56.6 5.5 34 34-67 5-38 (450)
460 PRK06126 hypothetical protein; 95.4 0.053 1.2E-06 55.6 8.1 34 202-235 7-40 (545)
461 KOG2755 Oxidoreductase [Genera 95.4 0.044 9.5E-07 48.8 6.2 31 205-235 2-34 (334)
462 PRK08401 L-aspartate oxidase; 95.3 0.081 1.8E-06 53.0 8.8 33 203-235 2-34 (466)
463 TIGR03197 MnmC_Cterm tRNA U-34 95.3 0.039 8.5E-07 53.8 6.3 63 104-174 131-193 (381)
464 PRK11445 putative oxidoreducta 95.2 0.029 6.2E-07 54.1 5.2 32 204-236 3-34 (351)
465 PRK08132 FAD-dependent oxidore 95.2 0.038 8.2E-07 56.7 6.3 34 202-235 23-56 (547)
466 TIGR02352 thiamin_ThiO glycine 95.2 0.14 3.1E-06 48.7 9.9 64 103-174 132-196 (337)
467 COG0493 GltD NADPH-dependent g 95.1 0.016 3.5E-07 57.2 3.2 36 200-235 121-156 (457)
468 PRK06996 hypothetical protein; 95.1 0.019 4.2E-07 56.3 3.6 33 203-235 12-48 (398)
469 KOG1238 Glucose dehydrogenase/ 95.0 0.023 5.1E-07 57.1 3.9 40 30-69 53-93 (623)
470 PRK05335 tRNA (uracil-5-)-meth 95.0 0.02 4.4E-07 55.6 3.5 34 203-236 3-36 (436)
471 KOG2614 Kynurenine 3-monooxyge 94.9 0.036 7.9E-07 52.7 4.7 33 203-235 3-35 (420)
472 PF01210 NAD_Gly3P_dh_N: NAD-d 94.9 0.024 5.3E-07 47.5 3.3 32 36-67 1-32 (157)
473 PLN02927 antheraxanthin epoxid 94.9 0.085 1.9E-06 54.6 7.8 36 200-235 79-114 (668)
474 COG0569 TrkA K+ transport syst 94.9 0.034 7.4E-07 49.7 4.3 32 36-67 2-33 (225)
475 KOG3851 Sulfide:quinone oxidor 94.8 0.074 1.6E-06 48.8 6.1 31 330-361 123-153 (446)
476 TIGR00137 gid_trmFO tRNA:m(5)U 94.8 0.024 5.2E-07 55.4 3.2 33 204-236 2-34 (433)
477 COG0579 Predicted dehydrogenas 94.7 0.065 1.4E-06 52.2 5.9 34 203-236 4-39 (429)
478 PF02737 3HCDH_N: 3-hydroxyacy 94.6 0.043 9.4E-07 47.1 4.2 31 37-67 2-32 (180)
479 COG1648 CysG Siroheme synthase 94.6 0.04 8.6E-07 48.4 4.0 36 199-234 9-44 (210)
480 PF00996 GDI: GDP dissociation 94.6 0.046 1E-06 53.6 4.8 44 33-76 3-46 (438)
481 TIGR00551 nadB L-aspartate oxi 94.5 0.14 3.1E-06 51.6 8.2 31 204-235 4-34 (488)
482 PRK10637 cysG siroheme synthas 94.4 0.05 1.1E-06 54.2 4.6 34 199-232 9-42 (457)
483 PRK06719 precorrin-2 dehydroge 94.3 0.042 9E-07 46.0 3.2 34 199-232 10-43 (157)
484 PF13241 NAD_binding_7: Putati 94.2 0.035 7.6E-07 42.8 2.3 35 33-67 6-40 (103)
485 KOG1800 Ferredoxin/adrenodoxin 94.0 0.2 4.3E-06 47.2 7.2 34 203-236 21-56 (468)
486 PRK06719 precorrin-2 dehydroge 94.0 0.083 1.8E-06 44.2 4.4 34 33-66 12-45 (157)
487 PRK06129 3-hydroxyacyl-CoA deh 94.0 0.067 1.5E-06 50.4 4.3 33 35-67 3-35 (308)
488 KOG0029 Amine oxidase [Seconda 93.9 0.066 1.4E-06 53.7 4.2 36 200-235 13-48 (501)
489 TIGR01470 cysG_Nterm siroheme 93.9 0.096 2.1E-06 46.0 4.8 34 34-67 9-42 (205)
490 PRK02705 murD UDP-N-acetylmura 93.8 0.066 1.4E-06 53.6 4.1 33 36-68 2-34 (459)
491 PRK08255 salicylyl-CoA 5-hydro 93.8 0.081 1.8E-06 56.4 5.0 32 204-235 2-35 (765)
492 PRK14106 murD UDP-N-acetylmura 93.7 0.089 1.9E-06 52.5 4.8 35 201-235 4-38 (450)
493 PRK07819 3-hydroxybutyryl-CoA 93.6 0.075 1.6E-06 49.4 3.9 33 35-67 6-38 (286)
494 PRK08294 phenol 2-monooxygenas 93.6 0.18 3.9E-06 52.6 7.0 35 202-236 32-67 (634)
495 PRK06718 precorrin-2 dehydroge 93.6 0.11 2.3E-06 45.6 4.6 35 32-66 8-42 (202)
496 TIGR03377 glycerol3P_GlpA glyc 93.5 0.32 6.9E-06 49.5 8.6 67 105-172 125-191 (516)
497 PF02558 ApbA: Ketopantoate re 93.4 0.12 2.5E-06 43.0 4.4 31 37-67 1-31 (151)
498 PRK12409 D-amino acid dehydrog 93.4 0.069 1.5E-06 52.6 3.5 33 203-235 2-34 (410)
499 PRK09260 3-hydroxybutyryl-CoA 93.4 0.097 2.1E-06 48.8 4.3 33 35-67 2-34 (288)
500 PRK07066 3-hydroxybutyryl-CoA 93.4 0.093 2E-06 49.4 4.1 34 34-67 7-40 (321)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=1.5e-42 Score=344.25 Aligned_cols=365 Identities=32% Similarity=0.514 Sum_probs=222.4
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc---------CCCCceeeecCCccccCCCCCCCCCCCCCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL---------KTYDRLRLHLPKQFCQLPLMPFPSNFPTYP 105 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (443)
++|+|||||++||++|+.|.+.|++++++|+++.+||.|+. ..|+++.++.+..++.+++.++|++++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 47999999999999999999999999999999999999974 358889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCc--cccceeEEEEEEeCC---CCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCC--C
Q 013435 106 TKQQFLTYLETYTNHFGLD--PVFNTTVVNAEYDHL---SRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPY--I 178 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~--v~~~~~V~~i~~~~~---~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~--~ 178 (443)
+..++.+|++++++++++. ++++++|+++++.++ .+.|.|++.. +++..+..+|+||+|||.++.|.+|. +
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~--~g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN--DGKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT--TTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec--CCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 9999999999999999986 689999999998754 2579998754 33446778999999999999999995 9
Q ss_pred CCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCcccccccc-CCCcc-----chh
Q 013435 179 EGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMI-GRSTF-----GLS 252 (443)
Q Consensus 179 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~-~~~~~-----~~~ 252 (443)
||++.|.|.++|+.++.+...+++|+|+|||+|.||+|+|.+|+..+++|++..|++.|++|+... |.+.- ...
T Consensus 160 ~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~ 239 (531)
T PF00743_consen 160 PGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFS 239 (531)
T ss_dssp CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-------------------------
T ss_pred hhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999998652 32211 111
Q ss_pred hhhhhhchhHHHHHHHH-HHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecCCcEEeCCcE
Q 013435 253 MCLLKWFPVRLVDQFLL-LMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRAIKRLTHHAA 331 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~v 331 (443)
..+.+.++..+.+.+.. .+...+ +...+++ .|.. ....+.+.+++++...+..|+|.++.+|.+++++++
T Consensus 240 ~~l~~~lp~~~~~~~~~~~l~~~~--~~~~~gl-~p~~------~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v 310 (531)
T PF00743_consen 240 SFLQKNLPESLSNWLLEKKLNKRF--DHENYGL-KPKH------RFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSV 310 (531)
T ss_dssp --------------------------------------------------------------------EE-EEEE-SSEE
T ss_pred cccccccccccccccccccccccc--ccccccc-cccc------cccccccccccccccccccccccccccccccccccc
Confidence 11222333333222211 111100 1112222 1211 122446778999999999999999988999999999
Q ss_pred EEcCCcEE-cccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCC---cCCCceEEEeeccCC---cccchHHHHH
Q 013435 332 EFIDGSIE-NYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGW---KGAHGLYAVGFNKRG---LLGASIDARR 404 (443)
Q Consensus 332 ~~~~g~~~-~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~---~~~~~ifaiGd~~~~---~~~a~~~a~~ 404 (443)
.+.||+++ ++|.||+|||++.+. .|+.+.-+.. .++.+..- .+.. ...|++.++|.+... ...+..||++
T Consensus 311 ~F~DGs~~e~vD~II~~TGY~~~f-pFL~~~~~~~-~~~~~~LY-k~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw 387 (531)
T PF00743_consen 311 IFEDGSTEEDVDVIIFCTGYKFSF-PFLDESLIKV-DDNRVRLY-KHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARW 387 (531)
T ss_dssp EETTSEEEEE-SEEEE---EE----TTB-TTTT-S--SSSSSEE-TTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHH
T ss_pred cccccccccccccccccccccccc-cccccccccc-cccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 99999875 699999999999998 5555542222 22222111 1111 135899999997642 1246789999
Q ss_pred HHHHHHHhh
Q 013435 405 ISEDIEHQW 413 (443)
Q Consensus 405 ~a~~i~~~l 413 (443)
+|+-+.+..
T Consensus 388 ~a~v~sG~~ 396 (531)
T PF00743_consen 388 AARVFSGRV 396 (531)
T ss_dssp HHHHHTTSS
T ss_pred ccccccccc
Confidence 999887764
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.2e-37 Score=305.79 Aligned_cols=312 Identities=24% Similarity=0.400 Sum_probs=238.5
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC--------------------CCCceeeecCCcc
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK--------------------TYDRLRLHLPKQF 89 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--------------------~~~~~~~~~~~~~ 89 (443)
++...++|+|||||++|+++|++|.+.|++++++|+.+.+||.|... +|.++.++.+...
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 44556899999999999999999999999999999999999999652 3667777888888
Q ss_pred ccCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCc--cccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEe
Q 013435 90 CQLPLMPFPSN-------FPTYPTKQQFLTYLETYTNHFGLD--PVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLC 160 (443)
Q Consensus 90 ~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~--v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a 160 (443)
+.++.++++.. .+.||+..++.+|++++++++++. ++++++|++++..+ +.|.|++.++. +...+..|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~-~~~~~~~~ 162 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSG-GFSKDEIF 162 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCC-CceEEEEc
Confidence 88877776432 356889999999999999999988 78999999999876 78999887532 22246789
Q ss_pred CEEEEccCCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCcccc
Q 013435 161 QWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLP 240 (443)
Q Consensus 161 ~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp 240 (443)
|+||+|||.++.|++|.+||++.+.+..+|++.+.....+++|+|+|||+|.+|+|+|..|...+.+|++++|++... .
T Consensus 163 d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~-~ 241 (461)
T PLN02172 163 DAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESD-T 241 (461)
T ss_pred CEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccc-c
Confidence 999999999889999999999999999999999998888999999999999999999999999999999999976210 0
Q ss_pred ccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEe
Q 013435 241 QEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVC 320 (443)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 320 (443)
.. . + + +...++.+.
T Consensus 242 ~~--------------------------------------~--~--~------------------------~~~~~v~~~ 255 (461)
T PLN02172 242 YE--------------------------------------K--L--P------------------------VPQNNLWMH 255 (461)
T ss_pred cc--------------------------------------c--C--c------------------------CCCCceEEC
Confidence 00 0 0 0 001122222
Q ss_pred cCCcEEeC-CcEEEcCCcEEcccEEEEccCCCCCCCCCccCcC-cCccCCCCcCCCC-CCCCcC-CCceEEEeeccCCcc
Q 013435 321 RAIKRLTH-HAAEFIDGSIENYDAIILATGYKSNVPYWLKDTE-MFSEKDGFPRMEF-PNGWKG-AHGLYAVGFNKRGLL 396 (443)
Q Consensus 321 ~~v~~~~~-~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~-l~~~~~G~i~~~~-~~~~~~-~~~ifaiGd~~~~~~ 396 (443)
..|.++.. +.|.+.||+.+++|.||+|||+++++ .|+...+ +..++ ..+..-. +-.... .|+|+++|-......
T Consensus 256 ~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~-pfL~~~~~i~v~~-~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~ 333 (461)
T PLN02172 256 SEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHF-PFLETNGYMRIDE-NRVEPLYKHVFPPALAPGLSFIGLPAMGIQ 333 (461)
T ss_pred CcccceecCCeEEECCCCCccCCEEEECCcCCccc-cccCcccceeeCC-CcchhhHHhhcCCCCCCcEEEEeccccccC
Confidence 22333333 34889999999999999999999998 5665432 32222 2211010 111222 489999998754433
Q ss_pred --cchHHHHHHHHHHHHhh
Q 013435 397 --GASIDARRISEDIEHQW 413 (443)
Q Consensus 397 --~a~~~a~~~a~~i~~~l 413 (443)
.+..||+++|+.+.+.+
T Consensus 334 f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 334 FVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred chhHHHHHHHHHHHHcCCC
Confidence 55679999999988765
No 3
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-35 Score=274.41 Aligned_cols=283 Identities=23% Similarity=0.325 Sum_probs=222.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCC-EEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCC---CCHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVP-SLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTY---PTKQ 108 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 108 (443)
++|||+||||||+|+++|.++.+.+++ ++|+|+. ..||.... . ...+.++++ .+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~~~------~-------------~~venypg~~~~~~g~ 61 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQLTK------T-------------TDVENYPGFPGGILGP 61 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCcccc------c-------------eeecCCCCCccCCchH
Confidence 478999999999999999999999998 5555554 44432111 0 011122333 3678
Q ss_pred HHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccE
Q 013435 109 QFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPI 188 (443)
Q Consensus 109 ~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~ 188 (443)
++.+.+.+++..+++++.. ..|..++... ..|.|++.++ ++++++|||||| ..++.|.+||...+.+..
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~~F~v~t~~~------~~~ak~vIiAtG--~~~~~~~~~~e~e~~g~g 130 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEG--GPFKVKTDKG------TYEAKAVIIATG--AGARKLGVPGEEEFEGKG 130 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecC--ceEEEEECCC------eEEEeEEEECcC--CcccCCCCCcchhhcCCc
Confidence 8999999999999988766 6677777765 3888999884 499999999999 566778888877888889
Q ss_pred eecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHH
Q 013435 189 FHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFL 268 (443)
Q Consensus 189 ~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (443)
++.|..|+. .+++++|+|||||++|+|.|..|...+.+||+++|++.+- +.+
T Consensus 131 v~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-a~~-------------------------- 182 (305)
T COG0492 131 VSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-AEE-------------------------- 182 (305)
T ss_pred eEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-cCH--------------------------
Confidence 999999999 8899999999999999999999999999999999999322 111
Q ss_pred HHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcC-CCeEEecC--CcEEeC---CcEEEcCCc----E
Q 013435 269 LLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRS-GNIKVCRA--IKRLTH---HAAEFIDGS----I 338 (443)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~--v~~~~~---~~v~~~~g~----~ 338 (443)
...+.+.+ .+++++.+ +.++.+ +++.+++.+ .
T Consensus 183 --------------------------------------~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~ 224 (305)
T COG0492 183 --------------------------------------ILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKE 224 (305)
T ss_pred --------------------------------------HHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEE
Confidence 11233322 27777766 777777 467777632 6
Q ss_pred EcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC----CcccchHHHHHHHHHHHHhhH
Q 013435 339 ENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR----GLLGASIDARRISEDIEHQWN 414 (443)
Q Consensus 339 ~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~----~~~~a~~~a~~~a~~i~~~l~ 414 (443)
+.+|-|+.++|..|++ .|+...+. .+++|++.++ +.++|++|||||+||++. ++..|..+|..+|.++.+++.
T Consensus 225 ~~~~gvf~~iG~~p~~-~~~~~~~~-~~~~g~I~v~-~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 225 LPVDGVFIAIGHLPNT-ELLKGLGV-LDENGYIVVD-EEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred EEeceEEEecCCCCch-HHHhhccc-cCCCCcEEcC-CCcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhh
Confidence 8999999999999999 77777666 5789999999 669999999999999874 466889999999999998886
Q ss_pred H
Q 013435 415 S 415 (443)
Q Consensus 415 ~ 415 (443)
.
T Consensus 302 ~ 302 (305)
T COG0492 302 S 302 (305)
T ss_pred h
Confidence 4
No 4
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=282.79 Aligned_cols=357 Identities=27% Similarity=0.387 Sum_probs=254.6
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCC-EEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVP-SLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
..+++||+|||||++|+++|++|.++|.+ ++|+|+++.+||+|+.++|+++.++++..++++++.+++ +...++....
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~ 83 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAE 83 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCccc
Confidence 35678999999999999999999999998 999999999999999999999999999999999999986 3344555555
Q ss_pred HHHHHHHHHHHcCCc--cccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCccc
Q 013435 110 FLTYLETYTNHFGLD--PVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGP 187 (443)
Q Consensus 110 ~~~~l~~~~~~~~~~--v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~ 187 (443)
+.+|+.++++++++. +.+++.|..++.+++...|+|+++++... ++.||.||+|||.++.|.+|.++|.+.|.+.
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~---~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~ 160 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTG---ELTADFVVVATGHLSEPYIPDFAGLDEFKGR 160 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCee---eEecCEEEEeecCCCCCCCCCCCCccCCCce
Confidence 778888888887766 46777888888888778999999986322 2889999999999999999999999999999
Q ss_pred EeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHH
Q 013435 188 IFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQF 267 (443)
Q Consensus 188 ~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (443)
++|+.++.+...+++|+|+|||+|+||++++..|++.|++||++.|++.+.+|....+......... ...++.......
T Consensus 161 ~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 239 (443)
T COG2072 161 ILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLAL-RRALPAGWALRR 239 (443)
T ss_pred EEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHH-hhhCccceehhh
Confidence 9999999999999999999999999999999999999999999999999999987755332211111 111111111000
Q ss_pred HH------------------------HHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC-
Q 013435 268 LL------------------------LMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA- 322 (443)
Q Consensus 268 ~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~- 322 (443)
.. .....+.......++. ..+.+. .... .+....+..+......+++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~-~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~ 316 (443)
T COG2072 240 GRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVR-EDLGPD-YAPG-DGRLVPDGDLFEAGASGDVEVVTEI 316 (443)
T ss_pred hhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChH-hhcCCC-CCcc-ccccccccchhhhhhhcccceeecc
Confidence 00 0000000000000000 000111 0111 111334445566677788888877
Q ss_pred CcEEeCCcEEEcCCcEEcccEEEEccCCCCCCCCCccCc-C-cCccCCCCcCCCCCCCCcCCCceEEEeeccCCcc
Q 013435 323 IKRLTHHAAEFIDGSIENYDAIILATGYKSNVPYWLKDT-E-MFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGLL 396 (443)
Q Consensus 323 v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~-~-l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~~ 396 (443)
+..+...++...++..++.|.++.+||+..+.-...... + ... ................|++|.++..+....
T Consensus 317 i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~pn~~~~~~~~~~~~ 391 (443)
T COG2072 317 IDRFTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPW-DKDAPLAYKGLALSGGPNLFLIGGPTKASG 391 (443)
T ss_pred ccccCCcceecCCCccccceEEEecCCCchhheeeeccccccccc-cccccceeccccccCCCceEEecCccCCcc
Confidence 666667777777777799999999999998521211111 1 111 112223332345567899999998776543
No 5
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.5e-34 Score=272.69 Aligned_cols=284 Identities=23% Similarity=0.337 Sum_probs=209.3
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTYL 114 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (443)
|||+|||||++|+++|..|.+.|++++|+|+.+ .||.|.... ....++.. +......++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence 699999999999999999999999999999886 666543310 00111111 1123557888999
Q ss_pred HHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecCCC
Q 013435 115 ETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSY 194 (443)
Q Consensus 115 ~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~ 194 (443)
+++++++++++++ ++|++++..+ ..|.|.+.++ .+++||+||+||| +.|..|.+||...+.+..++.+..
T Consensus 64 ~~~~~~~gv~~~~-~~v~~v~~~~--~~~~v~~~~~-----~~~~~d~liiAtG--~~~~~~~i~g~~~~~~~~~~~~~~ 133 (300)
T TIGR01292 64 KEQAVKFGAEIIY-EEVIKVDLSD--RPFKVKTGDG-----KEYTAKAVIIATG--ASARKLGIPGEDEFLGRGVSYCAT 133 (300)
T ss_pred HHHHHHcCCeEEE-EEEEEEEecC--CeeEEEeCCC-----CEEEeCEEEECCC--CCcccCCCCChhhcCCccEEEeee
Confidence 9999999999888 7899998866 6777877654 5899999999999 567778888876554444555544
Q ss_pred CCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHH
Q 013435 195 KTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWL 274 (443)
Q Consensus 195 ~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (443)
.+....++++|+|||+|.+|+|+|..|++.+.+|+++.|++... ...
T Consensus 134 ~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-~~~-------------------------------- 180 (300)
T TIGR01292 134 CDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-AEK-------------------------------- 180 (300)
T ss_pred cChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-cCH--------------------------------
Confidence 44445578899999999999999999999999999999987311 000
Q ss_pred HhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCC-CeEEecC--CcEEeCCc----EEEc-----CCcEEccc
Q 013435 275 MLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSG-NIKVCRA--IKRLTHHA----AEFI-----DGSIENYD 342 (443)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~--v~~~~~~~----v~~~-----~g~~~~~D 342 (443)
...+.+.+. +++++.+ +.++..++ +.+. +++++++|
T Consensus 181 --------------------------------~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D 228 (300)
T TIGR01292 181 --------------------------------ILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVD 228 (300)
T ss_pred --------------------------------HHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEcc
Confidence 001122222 5555544 45554432 3332 23578999
Q ss_pred EEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHhh
Q 013435 343 AIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 343 ~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~l 413 (443)
.||+|+|++|+. .++... +..+++|++.+| ++++++.|+||++|||+.. +..|..+|+.+|.+|.+++
T Consensus 229 ~vi~a~G~~~~~-~~l~~~-~~~~~~g~i~v~-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 229 GVFIAIGHEPNT-ELLKGL-LELDEGGYIVTD-EGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred EEEEeeCCCCCh-HHHHHh-heecCCCcEEEC-CCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 999999999997 566655 545678999999 6688899999999999862 4478999999999998754
No 6
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=4.5e-35 Score=283.07 Aligned_cols=329 Identities=19% Similarity=0.238 Sum_probs=224.2
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCccc-cCCC----CCCCCCCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQFC-QLPL----MPFPSNFPTYPT 106 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~ 106 (443)
+.||++|||+||+|..+|.++++.|.++.++|+...+||++-+ .|.|+..+....... .+.. +......+ -.+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~-~id 81 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP-KID 81 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC-CcC
Confidence 5799999999999999999999999999999999778887654 555554432222211 1110 10000000 012
Q ss_pred HHHHHH-----------HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 107 KQQFLT-----------YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 107 ~~~~~~-----------~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
..++.+ ....+.+..++++..++ .. ..+ ... |..... +.++++++++||||| ++|..
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~-a~---f~~-~~~--v~V~~~---~~~~~~a~~iiIATG--S~p~~ 149 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE-AR---FVD-PHT--VEVTGE---DKETITADNIIIATG--SRPRI 149 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE-EE---ECC-CCE--EEEcCC---CceEEEeCEEEEcCC--CCCcC
Confidence 222222 22334444455544332 11 111 133 333321 227999999999999 89999
Q ss_pred CCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhh
Q 013435 176 PYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCL 255 (443)
Q Consensus 176 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~ 255 (443)
|+.++.+.. ..+.+.+..... .-+++++|||||.+|+|+|..+.++|.+||++.|++ .+||..+.
T Consensus 150 ~~~~~~~~~--~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~----------- 214 (454)
T COG1249 150 PPGPGIDGA--RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDP----------- 214 (454)
T ss_pred CCCCCCCCC--eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCH-----------
Confidence 988887752 123333322333 568999999999999999999999999999999999 67776542
Q ss_pred hhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC----
Q 013435 256 LKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH---- 329 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~---- 329 (443)
.+.+.+.+.+.++++++..+ ++++..+
T Consensus 215 -----------------------------------------------ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v 247 (454)
T COG1249 215 -----------------------------------------------EISKELTKQLEKGGVKILLNTKVTAVEKKDDGV 247 (454)
T ss_pred -----------------------------------------------HHHHHHHHHHHhCCeEEEccceEEEEEecCCeE
Confidence 12222334455566777766 4555432
Q ss_pred cEEEcCCc--EEcccEEEEccCCCCCCCCCccCc-CcCccCCCCcCCCCCCCCcCCCceEEEeeccCCcc---cchHHHH
Q 013435 330 AAEFIDGS--IENYDAIILATGYKSNVPYWLKDT-EMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGLL---GASIDAR 403 (443)
Q Consensus 330 ~v~~~~g~--~~~~D~vi~atG~~~~~~~~~~~~-~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~~---~a~~~a~ 403 (443)
.+.+++|+ ++++|.|++|+|++||++.+..+. ++..+++|+|.+| ++++|++|+|||+||++.+.. .|.++|+
T Consensus 248 ~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~ 326 (454)
T COG1249 248 LVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGR 326 (454)
T ss_pred EEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHH
Confidence 25666776 789999999999999997775554 9998888999999 888888999999999976533 6788999
Q ss_pred HHHHHHHHhhHHHHHhHhhhhccccCCCCCcccc
Q 013435 404 RISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 404 ~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
.+|++|.+.-.........+..-+..|+...+.+
T Consensus 327 iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGl 360 (454)
T COG1249 327 IAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGL 360 (454)
T ss_pred HHHHHHhCCCCCcCcccCCCEEEECCCcceeeeC
Confidence 9999999822223345566677788888777765
No 7
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=7.2e-34 Score=269.92 Aligned_cols=293 Identities=18% Similarity=0.277 Sum_probs=216.9
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...+||+||||||+|+++|..|++.|++++++|+. ..||.+.... ....++.. +...+..++.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~ 66 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTT----------EVENWPGD------PNDLTGPLLM 66 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCc----------eECCCCCC------CCCCCHHHHH
Confidence 35689999999999999999999999999999965 4666543210 01111111 1224567888
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
+++.++...++.+++.+ .|..++..+ +.|.++... ..+.||+||+||| +.|+.|++||.+.+.+..++.
T Consensus 67 ~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~~~v~~~~------~~~~~d~vilAtG--~~~~~~~i~g~~~~~~~~v~~ 135 (321)
T PRK10262 67 ERMHEHATKFETEIIFD-HINKVDLQN--RPFRLTGDS------GEYTCDALIIATG--ASARYLGLPSEEAFKGRGVSA 135 (321)
T ss_pred HHHHHHHHHCCCEEEee-EEEEEEecC--CeEEEEecC------CEEEECEEEECCC--CCCCCCCCCCHHHcCCCcEEE
Confidence 89999888888776555 477787765 677776543 4689999999999 677888999977666666777
Q ss_pred CCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHH
Q 013435 192 SSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLM 271 (443)
Q Consensus 192 ~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (443)
+..++.....+++|+|||+|.+|+|+|..|++.+.+||++.|++. + +... .
T Consensus 136 ~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~-~-~~~~------------------~--------- 186 (321)
T PRK10262 136 CATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG-F-RAEK------------------I--------- 186 (321)
T ss_pred eecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc-c-CCCH------------------H---------
Confidence 777776667899999999999999999999999999999999873 1 1100 0
Q ss_pred HHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC-----cEEEcCC------cE
Q 013435 272 SWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH-----AAEFIDG------SI 338 (443)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~-----~v~~~~g------~~ 338 (443)
+.....+.+++.+|+++.+ ++++.++ ++++.++ ++
T Consensus 187 --------------------------------~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~ 234 (321)
T PRK10262 187 --------------------------------LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIES 234 (321)
T ss_pred --------------------------------HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEE
Confidence 0011234455677888776 6777654 3555432 36
Q ss_pred EcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCC----CCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHH
Q 013435 339 ENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEF----PNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIE 410 (443)
Q Consensus 339 ~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~----~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~ 410 (443)
+++|.||+++|++|+. .++.. ++.. ++|++.+|. ++++|++|+|||+|||+.. +..|+.+|..+|..|.
T Consensus 235 i~~D~vv~a~G~~p~~-~l~~~-~l~~-~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 235 LDVAGLFVAIGHSPNT-AIFEG-QLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 311 (321)
T ss_pred EECCEEEEEeCCccCh-hHhhc-cccc-cCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHH
Confidence 9999999999999998 45443 4444 568888884 2578999999999999843 4578999999999999
Q ss_pred HhhHHH
Q 013435 411 HQWNSE 416 (443)
Q Consensus 411 ~~l~~~ 416 (443)
+++...
T Consensus 312 ~~l~~~ 317 (321)
T PRK10262 312 RYLDGL 317 (321)
T ss_pred HHHHhc
Confidence 998653
No 8
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=2.4e-33 Score=281.78 Aligned_cols=290 Identities=20% Similarity=0.233 Sum_probs=221.2
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
....|||+||||||+|+++|.+|++.|++++++++. +||.|... + .+..++ . ..+....++
T Consensus 208 ~~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~-~------------~~~~~~---~-~~~~~~~~l 268 (517)
T PRK15317 208 AKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDT-M------------GIENFI---S-VPETEGPKL 268 (517)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeecc-C------------cccccC---C-CCCCCHHHH
Confidence 356799999999999999999999999999999864 78877431 0 011110 0 012467889
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
.+++.++++++++.++++++|.+++..+ +.|.|.+.++ ..+.|+.||+||| +.++.|++||...+.+..++
T Consensus 269 ~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~~~~g-----~~i~a~~vViAtG--~~~r~~~ipG~~~~~~~~v~ 339 (517)
T PRK15317 269 AAALEEHVKEYDVDIMNLQRASKLEPAA--GLIEVELANG-----AVLKAKTVILATG--ARWRNMNVPGEDEYRNKGVA 339 (517)
T ss_pred HHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEECCC-----CEEEcCEEEECCC--CCcCCCCCCCHHHhcCceEE
Confidence 9999999999999999999999998876 6777877654 5799999999999 46677889987777777677
Q ss_pred cCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHH
Q 013435 191 SSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLL 270 (443)
Q Consensus 191 ~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (443)
.+..++....++++|+|||+|++|+|+|..|+..+.+||++.+.+... +.. .
T Consensus 340 ~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-~~~-------------------~-------- 391 (517)
T PRK15317 340 YCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-ADQ-------------------V-------- 391 (517)
T ss_pred EeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-ccH-------------------H--------
Confidence 766666666688999999999999999999999999999999887311 100 0
Q ss_pred HHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhc-CCCeEEecC--CcEEeCC-----cEEEc---CC--c
Q 013435 271 MSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIR-SGNIKVCRA--IKRLTHH-----AAEFI---DG--S 337 (443)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~--v~~~~~~-----~v~~~---~g--~ 337 (443)
+.+.+. ..+|+++.+ +.++..+ ++.+. ++ +
T Consensus 392 -------------------------------------l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~ 434 (517)
T PRK15317 392 -------------------------------------LQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEH 434 (517)
T ss_pred -------------------------------------HHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEE
Confidence 011111 246666665 5555444 24443 23 3
Q ss_pred EEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHhh
Q 013435 338 IENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 338 ~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~l 413 (443)
++++|.|++++|++|++ .++... +..+++|++.+| ++.+|+.|+|||+||++.. +..|+.+|..||.++..++
T Consensus 435 ~i~~D~v~~~~G~~p~~-~~l~~~-v~~~~~g~i~vd-~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 435 HLELEGVFVQIGLVPNT-EWLKGT-VELNRRGEIIVD-ARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred EEEcCEEEEeECCccCc-hHHhhh-eeeCCCCcEEEC-cCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHH
Confidence 58999999999999998 566554 656678999999 7778999999999999753 5588999999999999888
Q ss_pred HHH
Q 013435 414 NSE 416 (443)
Q Consensus 414 ~~~ 416 (443)
.+.
T Consensus 512 ~~~ 514 (517)
T PRK15317 512 IRN 514 (517)
T ss_pred hhc
Confidence 653
No 9
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=2.2e-33 Score=281.79 Aligned_cols=290 Identities=21% Similarity=0.288 Sum_probs=215.0
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
.....|||+||||||+|+++|..|++.|++++|+++ .+||.+.... . ...+... ......+
T Consensus 208 ~~~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~--~--------~~~~~~~-------~~~~~~~ 268 (515)
T TIGR03140 208 EQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTV--G--------IENLISV-------PYTTGSQ 268 (515)
T ss_pred cccCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCc--C--------ccccccc-------CCCCHHH
Confidence 446789999999999999999999999999999975 4777664310 0 0000000 0125678
Q ss_pred HHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEe
Q 013435 110 FLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIF 189 (443)
Q Consensus 110 ~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~ 189 (443)
+.+.+.++..++++.++.+++|.+++... ..+.+++.++ ..+.||++|+||| +.++.|++||...+.+..+
T Consensus 269 l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~~v~~~~g-----~~i~~d~lIlAtG--a~~~~~~ipG~~~~~~~~v 339 (515)
T TIGR03140 269 LAANLEEHIKQYPIDLMENQRAKKIETED--GLIVVTLESG-----EVLKAKSVIVATG--ARWRKLGVPGEKEYIGKGV 339 (515)
T ss_pred HHHHHHHHHHHhCCeEEcCCEEEEEEecC--CeEEEEECCC-----CEEEeCEEEECCC--CCcCCCCCCCHHHcCCCeE
Confidence 88888888888899999999999998765 5677777654 5799999999999 4567788888655544445
Q ss_pred ecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHH
Q 013435 190 HSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLL 269 (443)
Q Consensus 190 ~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (443)
+.+..++.....+++|+|||+|.+|+|+|..|+..+.+||++.+.+... .. .
T Consensus 340 ~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-~~------------------------~--- 391 (515)
T TIGR03140 340 AYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-AD------------------------K--- 391 (515)
T ss_pred EEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-hh------------------------H---
Confidence 5554444444568999999999999999999999999999998876211 00 0
Q ss_pred HHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcC-CCeEEecC--CcEEeCC-----cEEEcC---C--
Q 013435 270 LMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRS-GNIKVCRA--IKRLTHH-----AAEFID---G-- 336 (443)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~--v~~~~~~-----~v~~~~---g-- 336 (443)
.+.+.+.. .+|+++.+ +.++.++ ++.+.+ +
T Consensus 392 -------------------------------------~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~ 434 (515)
T TIGR03140 392 -------------------------------------VLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEE 434 (515)
T ss_pred -------------------------------------HHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcE
Confidence 00112222 35666655 5555543 255543 2
Q ss_pred cEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHh
Q 013435 337 SIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 337 ~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~ 412 (443)
+++++|.||+|+|+.|++ .++... +..+++|+|.+| ++++|++|+|||+|||+.. +..|+.+|..+|.+|.++
T Consensus 435 ~~i~~D~vi~a~G~~Pn~-~~l~~~-~~~~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 435 KQLDLDGVFVQIGLVPNT-EWLKDA-VELNRRGEIVID-ERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDY 511 (515)
T ss_pred EEEEcCEEEEEeCCcCCc-hHHhhh-cccCCCCeEEEC-CCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHH
Confidence 468999999999999998 566554 655678999999 7788999999999999853 458999999999999988
Q ss_pred hHH
Q 013435 413 WNS 415 (443)
Q Consensus 413 l~~ 415 (443)
+.+
T Consensus 512 ~~~ 514 (515)
T TIGR03140 512 LIR 514 (515)
T ss_pred Hhh
Confidence 743
No 10
>PLN02507 glutathione reductase
Probab=100.00 E-value=8.2e-34 Score=282.93 Aligned_cols=331 Identities=15% Similarity=0.098 Sum_probs=210.6
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEec---------CCCCCccccc-CCCCceeeecCCccc----cCCCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILER---------ANCIASLWQL-KTYDRLRLHLPKQFC----QLPLMPF 97 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~---------~~~~gg~w~~-~~~~~~~~~~~~~~~----~~~~~~~ 97 (443)
...||++||||||+|+.+|..++++|.+|+|+|+ ...+||+|.+ .++|+..+....... ....+..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 5579999999999999999999999999999996 3568887754 556654432111110 0000000
Q ss_pred CCCCCCCCCHHHHHHH-----------HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEc
Q 013435 98 PSNFPTYPTKQQFLTY-----------LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVA 166 (443)
Q Consensus 98 ~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiA 166 (443)
............+.+. +++.....++++..+ ++..++. ..+.|+..++ +...+.||+||+|
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~----~~v~V~~~~g---~~~~~~~d~LIIA 174 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGP----NEVEVTQLDG---TKLRYTAKHILIA 174 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEEeCCC---cEEEEEcCEEEEe
Confidence 0000001123333322 223344445554443 2433332 5566765543 3347999999999
Q ss_pred cCCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCC
Q 013435 167 TGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGR 246 (443)
Q Consensus 167 tG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~ 246 (443)
|| +.|..|.+||.+.. .+.+........+++++|||+|.+|+|+|..+...|.+||++.|.+ .+++..+
T Consensus 175 TG--s~p~~p~ipG~~~~-----~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~~l~~~d--- 243 (499)
T PLN02507 175 TG--SRAQRPNIPGKELA-----ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-LPLRGFD--- 243 (499)
T ss_pred cC--CCCCCCCCCCccce-----echHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-CcCcccC---
Confidence 99 68888888886431 1221111122346899999999999999999999999999999987 3333221
Q ss_pred CccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--Cc
Q 013435 247 STFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IK 324 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~ 324 (443)
....+ .+.+.+++.+|+++.+ ++
T Consensus 244 --------------~~~~~-----------------------------------------~l~~~l~~~GI~i~~~~~V~ 268 (499)
T PLN02507 244 --------------DEMRA-----------------------------------------VVARNLEGRGINLHPRTNLT 268 (499)
T ss_pred --------------HHHHH-----------------------------------------HHHHHHHhCCCEEEeCCEEE
Confidence 01111 1123344556777665 55
Q ss_pred EEeC--Cc--EEEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---c
Q 013435 325 RLTH--HA--AEFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---L 396 (443)
Q Consensus 325 ~~~~--~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~ 396 (443)
++.. ++ +.+.+|+++++|.||+|+|++|++..+ +...++..+++|+|.+| ++++|+.|+|||+|||+... .
T Consensus 269 ~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd-~~~~Ts~p~IyAiGDv~~~~~l~~ 347 (499)
T PLN02507 269 QLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVD-EYSRTNIPSIWAIGDVTNRINLTP 347 (499)
T ss_pred EEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecC-CCCcCCCCCEEEeeEcCCCCccHH
Confidence 5542 23 455678889999999999999998443 34557777788999999 77889999999999998643 3
Q ss_pred cchHHHHHHHHHHHHhhHHHHHhHhhhhccccCCCCCcccc
Q 013435 397 GASIDARRISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 397 ~a~~~a~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
.|..||+.+|++|.+.-.........+...+..|+...+.+
T Consensus 348 ~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGl 388 (499)
T PLN02507 348 VALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGL 388 (499)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeC
Confidence 67889999999997542211222223344455555544443
No 11
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=9.4e-34 Score=279.95 Aligned_cols=324 Identities=19% Similarity=0.218 Sum_probs=207.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCcc----ccCCCCCCCCCCCCCCCH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQF----CQLPLMPFPSNFPTYPTK 107 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 107 (443)
+.|||+||||||+|+++|..+++.|.+|+|+|+. .+||++.+ .+.|+..+...... .....+..+.........
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW 79 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence 3589999999999999999999999999999996 57886643 44444221111000 001111111000000122
Q ss_pred HHH-----------HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 108 QQF-----------LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 108 ~~~-----------~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
..+ .+.+...+++.+++++.++.+. . .+ .. |... + ..++||+||+||| ++|..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~-~--~~--~~--v~v~-~-----~~~~~d~vIiAtG--s~p~~p 144 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF-T--KD--GT--VEVN-G-----RDYTAPHILIATG--GKPSFP 144 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-c--cC--CE--EEEC-C-----EEEEeCEEEEecC--CCCCCC
Confidence 222 2223444555677776665431 1 11 33 4443 2 5799999999999 788888
Q ss_pred -CCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhh
Q 013435 177 -YIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCL 255 (443)
Q Consensus 177 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~ 255 (443)
.+||.+.. ..+.... .....+++++|||+|.+|+|+|..|+..|.+||++.|++ .+++..+.
T Consensus 145 ~~i~g~~~~----~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~----------- 207 (450)
T TIGR01421 145 ENIPGAELG----TDSDGFF-ALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDS----------- 207 (450)
T ss_pred CCCCCCcee----EcHHHhh-CccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCH-----------
Confidence 78886421 1111111 122246899999999999999999999999999999988 33343211
Q ss_pred hhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--Cc-
Q 013435 256 LKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--HA- 330 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~~- 330 (443)
...+ ...+.+++.+|+++.+ ++++.. ++
T Consensus 208 ------~~~~-----------------------------------------~~~~~l~~~gI~i~~~~~v~~i~~~~~~~ 240 (450)
T TIGR01421 208 ------MISE-----------------------------------------TITEEYEKEGINVHKLSKPVKVEKTVEGK 240 (450)
T ss_pred ------HHHH-----------------------------------------HHHHHHHHcCCEEEcCCEEEEEEEeCCce
Confidence 1111 1223344556777766 556543 22
Q ss_pred --EEEcCC-cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHH
Q 013435 331 --AEFIDG-SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDAR 403 (443)
Q Consensus 331 --v~~~~g-~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~ 403 (443)
+.+.+| +.+++|.||+|+|++|++..+ +...++..+++|++.+| ++++|+.|+|||+|||+.. ...|.++|+
T Consensus 241 ~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~ 319 (450)
T TIGR01421 241 LVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVD-EYQNTNVPGIYALGDVVGKVELTPVAIAAGR 319 (450)
T ss_pred EEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeC-CCCcCCCCCEEEEEecCCCcccHHHHHHHHH
Confidence 456677 569999999999999998444 34558877788999999 7788999999999998864 336788999
Q ss_pred HHHHHHHHhhH-HHHHhHhhhhccccCCCCCcccc
Q 013435 404 RISEDIEHQWN-SEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 404 ~~a~~i~~~l~-~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
.+|++|.+... ........+...+..|+...+.+
T Consensus 320 ~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGl 354 (450)
T TIGR01421 320 KLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGL 354 (450)
T ss_pred HHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeC
Confidence 99999985321 11222334445566666555543
No 12
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=2.4e-33 Score=277.36 Aligned_cols=324 Identities=14% Similarity=0.128 Sum_probs=208.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCc----cccCCCCCCCCCCCCCCCH-
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQ----FCQLPLMPFPSNFPTYPTK- 107 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~- 107 (443)
.|||+||||||+|+++|..+++.|.+|+|+|+. .+||++.+ .+.|+..+..... ....+.+..... ..-...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG-KARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC-CCCcCHH
Confidence 589999999999999999999999999999985 68887654 4455432211110 001111100000 000111
Q ss_pred ----------HHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCC
Q 013435 108 ----------QQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPY 177 (443)
Q Consensus 108 ----------~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~ 177 (443)
..+.++++...++.++++..+ ++..++. ..+.+. .++ ..++||+||+||| +.|..|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~----~~v~v~-~~g-----~~~~~d~lIiATG--s~p~~p~ 146 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP----NTVEVL-QDG-----TTYTAKKILIAVG--GRPQKPN 146 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEe-cCC-----eEEEcCEEEEecC--CcCCCCC
Confidence 233445556666778776554 4555543 333343 222 5799999999999 7888888
Q ss_pred CCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhh
Q 013435 178 IEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLK 257 (443)
Q Consensus 178 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~ 257 (443)
+||.+.. +.+.+. ......+++++|||+|.+|+|+|..++..|.+|+++.+.+ .++|...
T Consensus 147 i~G~~~~----~~~~~~-~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d-------------- 206 (446)
T TIGR01424 147 LPGHELG----ITSNEA-FHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFD-------------- 206 (446)
T ss_pred CCCccce----echHHh-hcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccC--------------
Confidence 8886531 111111 1112347899999999999999999999999999999987 3333211
Q ss_pred hchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--Cc--E
Q 013435 258 WFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--HA--A 331 (443)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~~--v 331 (443)
..... .+.+.+.+.+++++.+ +.++.. ++ +
T Consensus 207 ---~~~~~-----------------------------------------~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v 242 (446)
T TIGR01424 207 ---DDMRA-----------------------------------------LLARNMEGRGIRIHPQTSLTSITKTDDGLKV 242 (446)
T ss_pred ---HHHHH-----------------------------------------HHHHHHHHCCCEEEeCCEEEEEEEcCCeEEE
Confidence 01111 1122333456676665 555542 22 4
Q ss_pred EEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHHHHH
Q 013435 332 EFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARRISE 407 (443)
Q Consensus 332 ~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~~a~ 407 (443)
.+.+|+++++|.||+|+|+.|++..+ +...++..+++|++.+| ++++|+.|+|||+|||+.. ...|..||+.+|+
T Consensus 243 ~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ 321 (446)
T TIGR01424 243 TLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVD-EYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFAN 321 (446)
T ss_pred EEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeC-CCCccCCCCEEEeeccCCCccchhHHHHHHHHHHH
Confidence 55678889999999999999998443 34557777778999999 7788999999999999864 3367889999999
Q ss_pred HHHHhhHHHHHhHhhhhccccCCCCCcccc
Q 013435 408 DIEHQWNSEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 408 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
+|.+...........+...+..|+...+.+
T Consensus 322 ~i~~~~~~~~~~~~~p~~if~~p~ia~vG~ 351 (446)
T TIGR01424 322 TEFGNNPTKFDHDLIATAVFSQPPLGTVGL 351 (446)
T ss_pred HHhcCCCCccCcCCCCeEEeCCchhEEEEC
Confidence 998642211222222333355565554443
No 13
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=6e-33 Score=275.41 Aligned_cols=322 Identities=18% Similarity=0.180 Sum_probs=208.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCccc----c-CCCCCCCCCCCCCCCH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQFC----Q-LPLMPFPSNFPTYPTK 107 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~ 107 (443)
.|||+||||||+|+++|..|+++|.+|+|+|+. .+||+|.+ .+.|+..+....... . ...+.+....+ ....
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN-KFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC-CcCH
Confidence 589999999999999999999999999999986 68887654 344432211110000 0 00000000000 0112
Q ss_pred HHH-----------HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 108 QQF-----------LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 108 ~~~-----------~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
..+ .+.+.....+.+++++.++ +..++. .. |++ ++ ..++||+||+||| +.|..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~~----~~--v~~-~g-----~~~~~d~lViATG--s~p~~p 146 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVDA----HT--VEV-NG-----ERYTADHILIATG--GRPSIP 146 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccC----CE--EEE-CC-----EEEEeCEEEEecC--CCCCCC
Confidence 222 2223344555677776553 444431 33 555 33 6799999999999 678888
Q ss_pred CCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhh
Q 013435 177 YIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 177 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
.+||.+. .++..... .....+++++|||+|.+|+|+|..|.+.|.+|+++.|++. +++...
T Consensus 147 ~i~g~~~----~~~~~~~~-~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~~------------- 207 (450)
T PRK06116 147 DIPGAEY----GITSDGFF-ALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA-PLRGFD------------- 207 (450)
T ss_pred CCCCcce----eEchhHhh-CccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC-CccccC-------------
Confidence 8888653 22222211 1223468999999999999999999999999999999873 333211
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--Cc--
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--HA-- 330 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~~-- 330 (443)
....+ .+.+.+++.+++++.+ +.++.. ++
T Consensus 208 ----~~~~~-----------------------------------------~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~ 242 (450)
T PRK06116 208 ----PDIRE-----------------------------------------TLVEEMEKKGIRLHTNAVPKAVEKNADGSL 242 (450)
T ss_pred ----HHHHH-----------------------------------------HHHHHHHHCCcEEECCCEEEEEEEcCCceE
Confidence 01111 1123344556777665 566642 22
Q ss_pred -EEEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHHH
Q 013435 331 -AEFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARRI 405 (443)
Q Consensus 331 -v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~~ 405 (443)
+.+.+|+++++|.||+|+|++|++..+ +...++..+++|++.+| ++++|++|+|||+|||+.. ...|..+|+.+
T Consensus 243 ~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~a 321 (450)
T PRK06116 243 TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVD-EYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRL 321 (450)
T ss_pred EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecC-CCCCcCCCCEEEEeecCCCcCcHHHHHHHHHHH
Confidence 456788899999999999999998544 34457777788999999 7788999999999999854 33678899999
Q ss_pred HHHHHHhhH-HHHHhHhhhhccccCCCCCcccc
Q 013435 406 SEDIEHQWN-SEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 406 a~~i~~~l~-~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
|++|.+... ........+...+..|+...+.+
T Consensus 322 a~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGl 354 (450)
T PRK06116 322 SERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGL 354 (450)
T ss_pred HHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeC
Confidence 999986432 11122233344455666655544
No 14
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-32 Score=262.29 Aligned_cols=308 Identities=35% Similarity=0.568 Sum_probs=233.1
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC--------C-CCceeeecCCccccCCCCCCCCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK--------T-YDRLRLHLPKQFCQLPLMPFPSNFP 102 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (443)
.+..+|+|||||++||++|++|.++|++++++||.+.+||.|... . |.+++++.++++++++..++++.++
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 456789999999999999999999999999999999999999886 5 9999999999999999999998865
Q ss_pred CC-CCHHHHHHHHHHHHHHcCCc--cccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCC
Q 013435 103 TY-PTKQQFLTYLETYTNHFGLD--PVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIE 179 (443)
Q Consensus 103 ~~-~~~~~~~~~l~~~~~~~~~~--v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~ 179 (443)
.+ |+..++.+||+++++++++. ++++++|..++...+ +.|.|.+.+..++ ....-+|.|++|||.+..|++|.++
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~-~~~~ifd~VvVctGh~~~P~~P~~~ 161 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ-IEEEIFDAVVVCTGHYVEPRIPQIP 161 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc-eeEEEeeEEEEcccCcCCCCCCcCC
Confidence 55 88899999999999999986 577888888887663 6899999875443 4688999999999998669999998
Q ss_pred C--CCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC-CccccccccCCCccchhhhhh
Q 013435 180 G--MDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT-VHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 180 g--~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~-~~~lp~~~~~~~~~~~~~~~~ 256 (443)
| .+.|.|..+|++++.....+.+|+|+|||.|+||+|++..++..+.+|++..+++ ....+...
T Consensus 162 g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~~------------- 228 (448)
T KOG1399|consen 162 GPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPEI------------- 228 (448)
T ss_pred CCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccce-------------
Confidence 8 6699999999999999999999999999999999999999999999999887610 00111110
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecCCcEEeCCcEEE-cC
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRAIKRLTHHAAEF-ID 335 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~v~~-~~ 335 (443)
+ ..++..+..|..+++++..+ .+
T Consensus 229 -------------------------------------------------------~-~~~~~~~~~i~~~~e~~~~~~~~ 252 (448)
T KOG1399|consen 229 -------------------------------------------------------L-GENLWQVPSIKSFTEDGSVFEKG 252 (448)
T ss_pred -------------------------------------------------------e-ecceEEccccccccCcceEEEcC
Confidence 0 12333333366677777554 45
Q ss_pred CcEEcccEEEEccCCCCCCCCCccCcC--cCccCCCCcCCCCCCCCc--CCCceEEEeecc--CCcccchHHHHHHHHHH
Q 013435 336 GSIENYDAIILATGYKSNVPYWLKDTE--MFSEKDGFPRMEFPNGWK--GAHGLYAVGFNK--RGLLGASIDARRISEDI 409 (443)
Q Consensus 336 g~~~~~D~vi~atG~~~~~~~~~~~~~--l~~~~~G~i~~~~~~~~~--~~~~ifaiGd~~--~~~~~a~~~a~~~a~~i 409 (443)
+....+|.||+|||+.-.. .|+.... ...++...+... +... ..+++..+|.-- ........|++.+++-+
T Consensus 253 ~~~~~~D~ii~ctgy~y~f-Pfl~~~~~~~~~~~~~~pl~k--~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~ 329 (448)
T KOG1399|consen 253 GPVERVDRIIFCTGYKYKF-PFLETLGLGTVRDNIVGPLYK--KVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVL 329 (448)
T ss_pred ceeEEeeeEEEeeeeEeec-ceeccCCceeeccCcccchhe--eccchhhCccccccccCeeeEeecceehhhhhhHhhh
Confidence 5678899999999999987 3444433 211111111111 1000 223333333221 22335667888888888
Q ss_pred HHhh
Q 013435 410 EHQW 413 (443)
Q Consensus 410 ~~~l 413 (443)
.+..
T Consensus 330 ~G~~ 333 (448)
T KOG1399|consen 330 EGRL 333 (448)
T ss_pred cCCC
Confidence 7764
No 15
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=2.8e-32 Score=275.71 Aligned_cols=290 Identities=20% Similarity=0.317 Sum_probs=210.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
.+|||+||||||+|+++|..|++.|++++|+|+. .+||.+.... ....++.. ...+..++.+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~----------~i~~~pg~-------~~~~~~~l~~ 64 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS----------EVVNYPGI-------LNTTGPELMQ 64 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc----------ccccCCCC-------cCCCHHHHHH
Confidence 4699999999999999999999999999999996 5676543210 00001110 1235678889
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
++++.+++++++++ ++.|+.++..+ ..+.|.+.+ ..+.+++||+||| +.|+.|.+||.+.+.+..++.+
T Consensus 65 ~l~~~~~~~gv~~~-~~~V~~i~~~~--~~~~V~~~~------g~~~a~~lVlATG--a~p~~~~ipG~~~~~~~~v~~~ 133 (555)
T TIGR03143 65 EMRQQAQDFGVKFL-QAEVLDVDFDG--DIKTIKTAR------GDYKTLAVLIATG--ASPRKLGFPGEEEFTGRGVAYC 133 (555)
T ss_pred HHHHHHHHcCCEEe-ccEEEEEEecC--CEEEEEecC------CEEEEeEEEECCC--CccCCCCCCCHHHhCCceEEEE
Confidence 99999998898874 66788888755 556676654 3689999999999 5778888998765555556655
Q ss_pred CCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHH
Q 013435 193 SYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMS 272 (443)
Q Consensus 193 ~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (443)
..++.....+++|+|||||.+|+|+|..|.+.|.+|+++.|.+... ... ...+
T Consensus 134 ~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~-~~~-------------------~~~~------- 186 (555)
T TIGR03143 134 ATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT-CAK-------------------LIAE------- 186 (555)
T ss_pred eecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc-cCH-------------------HHHH-------
Confidence 5555555678999999999999999999999999999999987311 000 0000
Q ss_pred HHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc----EEE---cCCcE----E
Q 013435 273 WLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA----AEF---IDGSI----E 339 (443)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~----v~~---~~g~~----~ 339 (443)
..+...+|+++.+ ++++..++ +.+ .+|+. +
T Consensus 187 -------------------------------------~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~ 229 (555)
T TIGR03143 187 -------------------------------------KVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKA 229 (555)
T ss_pred -------------------------------------HHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEec
Confidence 1112335666655 55665432 222 34543 2
Q ss_pred cccE----EEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC----CcccchHHHHHHHHHHHH
Q 013435 340 NYDA----IILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR----GLLGASIDARRISEDIEH 411 (443)
Q Consensus 340 ~~D~----vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~----~~~~a~~~a~~~a~~i~~ 411 (443)
++|. ||+++|+.|++ .++.. ++..+++|+|.+| ++++|+.|+|||+|||+. .+..|..+|+.+|.+|.+
T Consensus 230 ~~D~~~~~Vi~a~G~~Pn~-~l~~~-~l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~ 306 (555)
T TIGR03143 230 PKDAGTFGVFVFVGYAPSS-ELFKG-VVELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAER 306 (555)
T ss_pred cccccceEEEEEeCCCCCh-hHHhh-hcccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHH
Confidence 3676 99999999998 55544 4556678999999 778889999999999863 255799999999999999
Q ss_pred hhHHHHH
Q 013435 412 QWNSEAK 418 (443)
Q Consensus 412 ~l~~~~~ 418 (443)
++.....
T Consensus 307 ~l~~~~~ 313 (555)
T TIGR03143 307 YVKELKE 313 (555)
T ss_pred HHHhhhh
Confidence 9876544
No 16
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.3e-32 Score=272.43 Aligned_cols=305 Identities=15% Similarity=0.170 Sum_probs=202.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCC-ccccC---CCC-CCCCCCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPK-QFCQL---PLM-PFPSNFPTYPT 106 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~-~~~~~---~~~-~~~~~~~~~~~ 106 (443)
..|||+||||||+|+++|..|++.|.+++++|+.+.+||.|.+ .+.+...+.... .+..+ +.+ .+. .....+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~--~~~~~~ 81 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYR--VKLRIT 81 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccC--CcCccC
Confidence 4589999999999999999999999999999998889997754 344432221110 00000 000 000 001123
Q ss_pred HHHHHH-----------HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 107 KQQFLT-----------YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 107 ~~~~~~-----------~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
..++.+ ++..+..+.+++++.+. +..++ . ..+.|...++ +...++||+||+||| +.|..
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~--~--~~~~v~~~~g---~~~~~~~d~lviATG--s~p~~ 151 (461)
T PRK05249 82 FADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD--P--HTVEVECPDG---EVETLTADKIVIATG--SRPYR 151 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec--C--CEEEEEeCCC---ceEEEEcCEEEEcCC--CCCCC
Confidence 333333 33445556677765553 33332 2 4555665442 224799999999999 67777
Q ss_pred CCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhh
Q 013435 176 PYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCL 255 (443)
Q Consensus 176 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~ 255 (443)
|++++... ..+..+.........+++++|||+|.+|+|+|..|+..|.+||++.+++ .++|..+
T Consensus 152 p~~~~~~~---~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d------------ 215 (461)
T PRK05249 152 PPDVDFDH---PRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLD------------ 215 (461)
T ss_pred CCCCCCCC---CeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCC------------
Confidence 76655432 2233332222223457899999999999999999999999999999988 3444321
Q ss_pred hhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe--CCc-
Q 013435 256 LKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT--HHA- 330 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~--~~~- 330 (443)
....+. +.+.+++.+++++.+ ++++. .++
T Consensus 216 -----~~~~~~-----------------------------------------l~~~l~~~gI~v~~~~~v~~i~~~~~~~ 249 (461)
T PRK05249 216 -----DEISDA-----------------------------------------LSYHLRDSGVTIRHNEEVEKVEGGDDGV 249 (461)
T ss_pred -----HHHHHH-----------------------------------------HHHHHHHcCCEEEECCEEEEEEEeCCeE
Confidence 111111 122333456666655 55554 233
Q ss_pred -EEEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHHH
Q 013435 331 -AEFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARRI 405 (443)
Q Consensus 331 -v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~~ 405 (443)
+.+.+|+++++|.||+|+|++|++..+ +...++..+++|++.+| ++.+|+.|+|||+|||+.. ...|..+|+.+
T Consensus 250 ~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~a 328 (461)
T PRK05249 250 IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVN-ENYQTAVPHIYAVGDVIGFPSLASASMDQGRIA 328 (461)
T ss_pred EEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHH
Confidence 345678889999999999999998443 34457777788999999 7888999999999999853 33688999999
Q ss_pred HHHHHHh
Q 013435 406 SEDIEHQ 412 (443)
Q Consensus 406 a~~i~~~ 412 (443)
|.+|.+.
T Consensus 329 a~~i~g~ 335 (461)
T PRK05249 329 AQHAVGE 335 (461)
T ss_pred HHHHcCC
Confidence 9999854
No 17
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.1e-32 Score=271.74 Aligned_cols=285 Identities=19% Similarity=0.231 Sum_probs=196.8
Q ss_pred CCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
.+|+|||||++|+++|..|++. +.+|+|+|+++.++ +... .++.+.. . ......+...
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~~--------------~lp~~~~--~--~~~~~~~~~~ 61 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FANC--------------ALPYYIG--E--VVEDRKYALA 61 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cccC--------------Ccchhhc--C--ccCCHHHccc
Confidence 4799999999999999999987 57999999987543 1110 0111000 0 0011222222
Q ss_pred HH-HHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 113 YL-ETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 113 ~l-~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
+. ..+.++.+++++.+++|++|+.+. ..+ .+.++..++..+++||+||+||| +.|..|.+++.. .+..
T Consensus 62 ~~~~~~~~~~~i~v~~~~~V~~Id~~~--~~v--~~~~~~~~~~~~~~yd~lviAtG--s~~~~~~~~~~~-----~~~~ 130 (438)
T PRK13512 62 YTPEKFYDRKQITVKTYHEVIAINDER--QTV--TVLNRKTNEQFEESYDKLILSPG--ASANSLGFESDI-----TFTL 130 (438)
T ss_pred CCHHHHHHhCCCEEEeCCEEEEEECCC--CEE--EEEECCCCcEEeeecCEEEECCC--CCCCCCCCCCCC-----eEEe
Confidence 21 344466788988899999999876 554 44333222335689999999999 677766654311 1222
Q ss_pred CCCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHH
Q 013435 192 SSYKTG-------ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLV 264 (443)
Q Consensus 192 ~~~~~~-------~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 264 (443)
....+. ....+++++|||+|.+|+|+|..|.+.|.+||++.+++ .++|... ....
T Consensus 131 ~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d-----------------~~~~ 192 (438)
T PRK13512 131 RNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMD-----------------ADMN 192 (438)
T ss_pred cCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcC-----------------HHHH
Confidence 111111 11246899999999999999999999999999999987 3333221 1111
Q ss_pred HHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCcEEEcCCcEEccc
Q 013435 265 DQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHAAEFIDGSIENYD 342 (443)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~v~~~~g~~~~~D 342 (443)
....+.+++.+|+++.+ ++++....+.+.+|+++++|
T Consensus 193 -----------------------------------------~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D 231 (438)
T PRK13512 193 -----------------------------------------QPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYD 231 (438)
T ss_pred -----------------------------------------HHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeC
Confidence 11233455667888766 77787777888888899999
Q ss_pred EEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------------cccchHHHHHHHHHH
Q 013435 343 AIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------------LLGASIDARRISEDI 409 (443)
Q Consensus 343 ~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------------~~~a~~~a~~~a~~i 409 (443)
.|++|+|++|++ +++...++..+++|++.+| ++++++.|+|||+|||+.. ...|..+|+.+|++|
T Consensus 232 ~vl~a~G~~pn~-~~l~~~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni 309 (438)
T PRK13512 232 MIIEGVGTHPNS-KFIESSNIKLDDKGFIPVN-DKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQI 309 (438)
T ss_pred EEEECcCCCcCh-HHHHhcCcccCCCCcEEEC-CCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHh
Confidence 999999999998 5676667777778999999 6788999999999999741 113567888888888
Q ss_pred HH
Q 013435 410 EH 411 (443)
Q Consensus 410 ~~ 411 (443)
.+
T Consensus 310 ~g 311 (438)
T PRK13512 310 AG 311 (438)
T ss_pred cC
Confidence 75
No 18
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.1e-32 Score=274.35 Aligned_cols=323 Identities=15% Similarity=0.178 Sum_probs=204.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCccc------cCCCCCCCCCCCCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQFC------QLPLMPFPSNFPTYPT 106 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 106 (443)
.|||+||||||+|+++|..|++.|.+|+|+|+. .+||.|.+ .+.|+..+....... .......+.. ....
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~--~~~~ 81 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP--VSVD 81 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc--CccC
Confidence 589999999999999999999999999999997 46776543 333332111100000 0001110000 0112
Q ss_pred HHHHHHH-----------HHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCc
Q 013435 107 KQQFLTY-----------LETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 107 ~~~~~~~-----------l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
...+.++ +....++. +++++.++.+. + +. .. |+.+. .+++||+||+||| +.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~-~--~~--~~--v~v~~------~~~~~d~lViATG--s~p~ 146 (463)
T PRK06370 82 FKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF-E--SP--NT--VRVGG------ETLRAKRIFINTG--ARAA 146 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE-c--cC--CE--EEECc------EEEEeCEEEEcCC--CCCC
Confidence 3333322 23333444 66666555331 1 11 33 44432 5799999999999 7888
Q ss_pred cCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhh
Q 013435 175 VPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMC 254 (443)
Q Consensus 175 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~ 254 (443)
.|++||.+.. ..+.+.+.. .....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|....
T Consensus 147 ~p~i~G~~~~--~~~~~~~~~-~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~---------- 212 (463)
T PRK06370 147 IPPIPGLDEV--GYLTNETIF-SLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDE---------- 212 (463)
T ss_pred CCCCCCCCcC--ceEcchHhh-CccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCH----------
Confidence 8999987642 122222222 122347899999999999999999999999999999988 44443210
Q ss_pred hhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC--c
Q 013435 255 LLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH--A 330 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~--~ 330 (443)
...+ .+.+.+++.+++++.+ +.++..+ +
T Consensus 213 -------~~~~-----------------------------------------~l~~~l~~~GV~i~~~~~V~~i~~~~~~ 244 (463)
T PRK06370 213 -------DVAA-----------------------------------------AVREILEREGIDVRLNAECIRVERDGDG 244 (463)
T ss_pred -------HHHH-----------------------------------------HHHHHHHhCCCEEEeCCEEEEEEEcCCE
Confidence 0111 1123344456776665 5566432 2
Q ss_pred --EEEc---CCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---ccchHH
Q 013435 331 --AEFI---DGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---LGASID 401 (443)
Q Consensus 331 --v~~~---~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~~a~~~ 401 (443)
+.+. ++.++++|.||+|+|++|++..+ +...++..+++|++.+| ++++++.|+|||+|||+... ..|..|
T Consensus 245 ~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~l~t~~~~IyAiGD~~~~~~~~~~A~~~ 323 (463)
T PRK06370 245 IAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD-DQLRTTNPGIYAAGDCNGRGAFTHTAYND 323 (463)
T ss_pred EEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeEC-cCCcCCCCCEEEeeecCCCcccHHHHHHH
Confidence 2232 34579999999999999998545 44557777788999999 77889999999999998642 367789
Q ss_pred HHHHHHHHHHhhHHHHHhHhhhhccccCCCCCcccc
Q 013435 402 ARRISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 402 a~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
|+.+|++|.+...........+...+..|+...+.+
T Consensus 324 g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~ 359 (463)
T PRK06370 324 ARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGM 359 (463)
T ss_pred HHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeC
Confidence 999999998653222222223333455565555544
No 19
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1.1e-32 Score=274.47 Aligned_cols=326 Identities=18% Similarity=0.217 Sum_probs=204.3
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCccccCCC---CCCC-C----CCCC-C
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQFCQLPL---MPFP-S----NFPT-Y 104 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~~~~---~~~~-~----~~~~-~ 104 (443)
|||+||||||+|+++|..+++.|.+|+|+|+.. +||+|.+ .+.|+..+........+.. +... . ++.. .
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 799999999999999999999999999999976 8887754 3444332211111111000 0000 0 0000 0
Q ss_pred CCHHHHHHHH-----HHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCC
Q 013435 105 PTKQQFLTYL-----ETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIE 179 (443)
Q Consensus 105 ~~~~~~~~~l-----~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~ 179 (443)
...+++...+ ...+++.+++++.+. +..++ . .. |...++ ...+.+|+||+||| +.|..|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~~--~--~~--v~v~~g----~~~~~~~~lIiATG--s~p~~p~i~ 146 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFKD--P--KT--VKVDLG----REVRGAKRFLIATG--ARPAIPPIP 146 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEcc--C--CE--EEEcCC----eEEEEeCEEEEcCC--CCCCCCCCC
Confidence 1112232222 234555676665443 22221 1 22 554432 14689999999999 688889999
Q ss_pred CCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhc
Q 013435 180 GMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWF 259 (443)
Q Consensus 180 g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~ 259 (443)
|.+... +.++.........+++++|||+|.+|+|+|..|.+.|.+||++.+.+ .++|..+.
T Consensus 147 G~~~~~---~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~--------------- 207 (463)
T TIGR02053 147 GLKEAG---YLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEP--------------- 207 (463)
T ss_pred CcccCc---eECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCH---------------
Confidence 876531 22222211222235899999999999999999999999999999988 34443211
Q ss_pred hhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC--c--EEE
Q 013435 260 PVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH--A--AEF 333 (443)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~--~--v~~ 333 (443)
.... .+.+.+.+.+|+++.+ ++++..+ + +.+
T Consensus 208 --~~~~-----------------------------------------~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~ 244 (463)
T TIGR02053 208 --EISA-----------------------------------------AVEEALAEEGIEVVTSAQVKAVSVRGGGKIITV 244 (463)
T ss_pred --HHHH-----------------------------------------HHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEE
Confidence 0111 1122333456666655 5555432 1 233
Q ss_pred c---CCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHHHH
Q 013435 334 I---DGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARRIS 406 (443)
Q Consensus 334 ~---~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~~a 406 (443)
. +++++++|.||+|+|++|++..+ +...++..+++|++.+| ++++|+.|+|||+|||+.. ...|..||+.+|
T Consensus 245 ~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa 323 (463)
T TIGR02053 245 EKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVD-ETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAA 323 (463)
T ss_pred EeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeEC-CCccCCCCCEEEeeecCCCcccHhHHHHHHHHHH
Confidence 2 23579999999999999998545 45557777788999999 7888999999999999865 236888999999
Q ss_pred HHHHHhhHHHHHhHhhhhccccCCCCCcccc
Q 013435 407 EDIEHQWNSEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 407 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
.+|+............+...+..|+...+.+
T Consensus 324 ~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGl 354 (463)
T TIGR02053 324 ENALGGANAKLDLLVIPRVVFTDPAVASVGL 354 (463)
T ss_pred HHhcCCCCCccCcCCCCeEEeccCceEEEeC
Confidence 9998642221222223334455555544443
No 20
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=8.6e-32 Score=266.49 Aligned_cols=323 Identities=17% Similarity=0.233 Sum_probs=205.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCccccc-CCCCceeeecCCccccCCCCCCCCCCCC-CCCHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN-CIASLWQL-KTYDRLRLHLPKQFCQLPLMPFPSNFPT-YPTKQQF 110 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 110 (443)
.|||+||||||+|+++|..|+++|.+|+|+|+.+ .+||+|.+ .+.+...+..... . ...+.. ....+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~-------~-~~~~~~~~~~~~~~ 74 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ-------Q-HTDFVRAIQRKNEV 74 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc-------c-CCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999976 47887754 2232211110000 0 000000 0011222
Q ss_pred HHHHHH-----HHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCc
Q 013435 111 LTYLET-----YTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFR 185 (443)
Q Consensus 111 ~~~l~~-----~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~ 185 (443)
.++++. ..+..++++..+ ++..++. ..+.|.+.++ ..++.||+||+||| +.|..|.+||.+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~----~~~~v~~~~g----~~~~~~d~lviATG--s~p~~p~i~G~~~~~ 143 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNIDVIDG-QAEFINN----HSLRVHRPEG----NLEIHGEKIFINTG--AQTVVPPIPGITTTP 143 (441)
T ss_pred HHHHHHhHHHHHhhcCCcEEEEE-EEEEecC----CEEEEEeCCC----eEEEEeCEEEEcCC--CcCCCCCCCCccCCC
Confidence 233321 222225555433 3444432 4555665442 14699999999999 678888999976543
Q ss_pred ccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHH
Q 013435 186 GPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVD 265 (443)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (443)
+ ++ .+.........+++++|||+|.+|+|+|..|...|.+||++.|++ .++|.... + ..
T Consensus 144 ~-v~-~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~------------~~- 202 (441)
T PRK08010 144 G-VY-DSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDR-----D------------IA- 202 (441)
T ss_pred C-EE-ChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCH-----H------------HH-
Confidence 3 22 222222233456899999999999999999999999999999987 45554321 0 01
Q ss_pred HHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC--cEEEc-CCcEEc
Q 013435 266 QFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH--AAEFI-DGSIEN 340 (443)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~--~v~~~-~g~~~~ 340 (443)
..+.+.+++.+|+++.+ +.++..+ ++.+. ++.+++
T Consensus 203 ----------------------------------------~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~ 242 (441)
T PRK08010 203 ----------------------------------------DNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLA 242 (441)
T ss_pred ----------------------------------------HHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEE
Confidence 11123344556777765 6666532 33332 234589
Q ss_pred ccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---ccchHHHHHHHHHHHHhhHH-
Q 013435 341 YDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---LGASIDARRISEDIEHQWNS- 415 (443)
Q Consensus 341 ~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~~a~~~a~~~a~~i~~~l~~- 415 (443)
+|.|++|+|.+|++..+ +...++..+++|+|.+| ++++|+.|+|||+|||+... ..|..+|+.++++|.+....
T Consensus 243 ~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~~~~~ 321 (441)
T PRK08010 243 VDALLIASGRQPATASLHPENAGIAVNERGAIVVD-KYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRS 321 (441)
T ss_pred eCEEEEeecCCcCCCCcCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCCCCcc
Confidence 99999999999998433 23447777778999999 77889999999999998753 35678899999998753211
Q ss_pred HHHhHhhhhccccCCCCCcccc
Q 013435 416 EAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
.......+...+..|+...+.+
T Consensus 322 ~~~~~~~p~~~~~~p~ia~vGl 343 (441)
T PRK08010 322 TDDRKNVPYSVFMTPPLSRVGM 343 (441)
T ss_pred cCccCCCCEEEECCCCceeeeC
Confidence 1122234444455666555543
No 21
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-32 Score=228.53 Aligned_cols=289 Identities=19% Similarity=0.249 Sum_probs=214.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCC---CHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYP---TKQQF 110 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 110 (443)
+..|+|||+||++..+|..+++..++-+++|--.. ++. -++-+ +......+.+++|| ...++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~-~~i-----~pGGQ---------LtTTT~veNfPGFPdgi~G~~l 72 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMA-NGI-----APGGQ---------LTTTTDVENFPGFPDGITGPEL 72 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeec-cCc-----CCCce---------eeeeeccccCCCCCcccccHHH
Confidence 45799999999999999999999999999986321 111 11111 11111222444554 57999
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCC-C-CCcccE
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGM-D-GFRGPI 188 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~-~-~~~~~~ 188 (443)
.+.+++++.++|.++...+ |.+++.+. ..|.+.++. +.+.+|.||+|||+ ..+...+||. + .|..+.
T Consensus 73 ~d~mrkqs~r~Gt~i~tEt-Vskv~~ss--kpF~l~td~------~~v~~~avI~atGA--sAkRl~~pg~ge~~fWqrG 141 (322)
T KOG0404|consen 73 MDKMRKQSERFGTEIITET-VSKVDLSS--KPFKLWTDA------RPVTADAVILATGA--SAKRLHLPGEGEGEFWQRG 141 (322)
T ss_pred HHHHHHHHHhhcceeeeee-hhhccccC--CCeEEEecC------CceeeeeEEEeccc--ceeeeecCCCCcchHHhcc
Confidence 9999999999998876654 88888877 788888876 78999999999996 4445567765 3 366778
Q ss_pred eecCCCCCCCC--CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHH
Q 013435 189 FHSSSYKTGEL--FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQ 266 (443)
Q Consensus 189 ~~~~~~~~~~~--~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (443)
+.+|..|+... +++|..+|||||.+|+|-|..|...+.+|++++|++++..... ..
T Consensus 142 iSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~--------------------Mq-- 199 (322)
T KOG0404|consen 142 ISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKI--------------------MQ-- 199 (322)
T ss_pred cchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHH--------------------HH--
Confidence 99999999865 8999999999999999999999999999999999994221110 00
Q ss_pred HHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC----------cEEEc
Q 013435 267 FLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH----------AAEFI 334 (443)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~----------~v~~~ 334 (443)
...+.+.||+++.+ +.+.-.+ ++.+.
T Consensus 200 ------------------------------------------~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tg 237 (322)
T KOG0404|consen 200 ------------------------------------------QRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTG 237 (322)
T ss_pred ------------------------------------------HHHhcCCCeEEEechhhhhhccCcccccceEEEecccC
Confidence 11233456666555 2222222 23333
Q ss_pred CCcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC----CcccchHHHHHHHHHHH
Q 013435 335 DGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR----GLLGASIDARRISEDIE 410 (443)
Q Consensus 335 ~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~----~~~~a~~~a~~~a~~i~ 410 (443)
+...++++-+++++|..|++ .|++. +++.|.+|++++.+....|++||+||+||... +..+|...|.++|-...
T Consensus 238 e~~dl~v~GlFf~IGH~Pat-~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaaldAe 315 (322)
T KOG0404|consen 238 EETDLPVSGLFFAIGHSPAT-KFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALDAE 315 (322)
T ss_pred cccccccceeEEEecCCchh-hHhcC-ceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhhHH
Confidence 44579999999999999998 66666 77778999999997888999999999999874 45566777777777777
Q ss_pred HhhH
Q 013435 411 HQWN 414 (443)
Q Consensus 411 ~~l~ 414 (443)
++|.
T Consensus 316 ~yL~ 319 (322)
T KOG0404|consen 316 RYLT 319 (322)
T ss_pred HHhh
Confidence 6664
No 22
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=7e-32 Score=267.34 Aligned_cols=333 Identities=14% Similarity=0.106 Sum_probs=204.2
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHc-CCCEEEEecC--------CCCCccccc-CCCCceeeecCCccc----cCCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEK-GVPSLILERA--------NCIASLWQL-KTYDRLRLHLPKQFC----QLPLMPFP 98 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~-g~~v~iie~~--------~~~gg~w~~-~~~~~~~~~~~~~~~----~~~~~~~~ 98 (443)
+.||++|||+||+|+.+|..+++. |.+|+|||+. ..+||++-+ .+.|+..+....... ....+...
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 569999999999999999999997 8999999974 468887654 444543322111110 00000000
Q ss_pred -CCCCCCCCHHHHHHHHH-----------HHHHH-cCCccccceeEEEEEEeCCCCeEEEEEee-cCCCcEEEEEeCEEE
Q 013435 99 -SNFPTYPTKQQFLTYLE-----------TYTNH-FGLDPVFNTTVVNAEYDHLSRLWRVKTQQ-GLKQEETVYLCQWLI 164 (443)
Q Consensus 99 -~~~~~~~~~~~~~~~l~-----------~~~~~-~~~~v~~~~~V~~i~~~~~~~~~~v~~~~-~~~~~~~~i~a~~vI 164 (443)
.....-.....+.++.. +..+. .++++..+.. .-+ +...+.|.... +.+.....++||+||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a-~f~----~~~~v~V~~~~~~~~~~~~~~~~d~lI 156 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWG-ALE----DKNVVLVRESADPKSAVKERLQAEHIL 156 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEE-EEc----cCCEEEEeeccCCCCCcceEEECCEEE
Confidence 00000012223222222 12222 2444433321 111 11443443221 111112689999999
Q ss_pred EccCCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhc---CCccEEEEecCCccccc
Q 013435 165 VATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNY---NARPSLVVRDTVHVLPQ 241 (443)
Q Consensus 165 iAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~---g~~Vt~i~r~~~~~lp~ 241 (443)
+||| +.|..|++||.+.. + +..........+++++|||+|.+|+|+|..+... |.+||++.+.+ .++|.
T Consensus 157 IATG--s~p~~p~i~G~~~~----~-~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~-~il~~ 228 (486)
T TIGR01423 157 LATG--SWPQMLGIPGIEHC----I-SSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN-MILRG 228 (486)
T ss_pred EecC--CCCCCCCCCChhhe----e-chhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC-ccccc
Confidence 9999 67888889986531 2 2211111223578999999999999999877654 89999999988 44443
Q ss_pred cccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEec
Q 013435 242 EMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCR 321 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 321 (443)
.+. ... ....+.+++.+|+++.
T Consensus 229 ~d~-----------------~~~-----------------------------------------~~l~~~L~~~GI~i~~ 250 (486)
T TIGR01423 229 FDS-----------------TLR-----------------------------------------KELTKQLRANGINIMT 250 (486)
T ss_pred cCH-----------------HHH-----------------------------------------HHHHHHHHHcCCEEEc
Confidence 321 111 1122334455677776
Q ss_pred C--CcEEeC--C---cEEEcCCcEEcccEEEEccCCCCCCCCCc-cCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC
Q 013435 322 A--IKRLTH--H---AAEFIDGSIENYDAIILATGYKSNVPYWL-KDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR 393 (443)
Q Consensus 322 ~--v~~~~~--~---~v~~~~g~~~~~D~vi~atG~~~~~~~~~-~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~ 393 (443)
+ ++++.. + .+.+.+++++++|.||+|+|++|++..+. ...++..+++|+|.+| ++++|+.|+|||+|||+.
T Consensus 251 ~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd-~~l~Ts~~~IyA~GDv~~ 329 (486)
T TIGR01423 251 NENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVD-EFSRTNVPNIYAIGDVTD 329 (486)
T ss_pred CCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecC-CCCcCCCCCEEEeeecCC
Confidence 5 556642 2 25566788899999999999999984332 3457777788999999 777899999999999986
Q ss_pred C---cccchHHHHHHHHHHHHhhHHHHHhHhhhhccccCCCCCcccc
Q 013435 394 G---LLGASIDARRISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 394 ~---~~~a~~~a~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
. ...|..||+.+|++|.+.-.........+...+..|+...+.+
T Consensus 330 ~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGl 376 (486)
T TIGR01423 330 RVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGL 376 (486)
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeC
Confidence 5 2368889999999998642221222233444455565544443
No 23
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=3.5e-32 Score=256.32 Aligned_cols=288 Identities=19% Similarity=0.193 Sum_probs=209.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
+.++|+|||||++|+.+|..|.+.. .++++||+.+.+- |..- .++...+..+.+++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl--~~pl--------------------L~eva~g~l~~~~i 59 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL--FTPL--------------------LYEVATGTLSESEI 59 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc--cchh--------------------hhhhhcCCCChhhe
Confidence 3568999999999999999999985 8999999987431 1000 00111233455666
Q ss_pred HHHHHHHHHHcC-CccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEe
Q 013435 111 LTYLETYTNHFG-LDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIF 189 (443)
Q Consensus 111 ~~~l~~~~~~~~-~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~ 189 (443)
.-.++..+.+.+ +++. ..+|++|+.++ .. |.+.++ ..+.||++|+|+| +.+..+.+||..++.-..-
T Consensus 60 ~~p~~~~~~~~~~v~~~-~~~V~~ID~~~--k~--V~~~~~-----~~i~YD~LVvalG--s~~~~fgi~G~~E~a~~lk 127 (405)
T COG1252 60 AIPLRALLRKSGNVQFV-QGEVTDIDRDA--KK--VTLADL-----GEISYDYLVVALG--SETNYFGIPGAAEYAFGLK 127 (405)
T ss_pred eccHHHHhcccCceEEE-EEEEEEEcccC--CE--EEeCCC-----ccccccEEEEecC--CcCCcCCCCCHHHhCCCCC
Confidence 666677666544 5544 44699999887 55 666653 6899999999999 7888889999776432111
Q ss_pred ecCC-------------CCCCCCC--CCCeEEEEccCCCHHHHHHHHhhcCC-------------ccEEEEecCCccccc
Q 013435 190 HSSS-------------YKTGELF--RDKNVLVVGCGNSGMEVSLDLCNYNA-------------RPSLVVRDTVHVLPQ 241 (443)
Q Consensus 190 ~~~~-------------~~~~~~~--~~~~v~ViG~G~~~~e~a~~l~~~g~-------------~Vt~i~r~~~~~lp~ 241 (443)
...+ ..+.... .-..|+|+|||++|+|+|.+|++... +|+++.+.+ .+||.
T Consensus 128 s~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~ILp~ 206 (405)
T COG1252 128 TLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-RILPM 206 (405)
T ss_pred CHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-hhccC
Confidence 1100 0000011 12379999999999999999997532 788888888 56564
Q ss_pred cccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEec
Q 013435 242 EMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCR 321 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 321 (443)
.. +.+. ....+.+.+.+|++..
T Consensus 207 ~~-----------------~~l~-----------------------------------------~~a~~~L~~~GV~v~l 228 (405)
T COG1252 207 FP-----------------PKLS-----------------------------------------KYAERALEKLGVEVLL 228 (405)
T ss_pred CC-----------------HHHH-----------------------------------------HHHHHHHHHCCCEEEc
Confidence 32 1222 2224556678999998
Q ss_pred C--CcEEeCCcEEEcCCcE-EcccEEEEccCCCCCCCCCccC-cCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc--
Q 013435 322 A--IKRLTHHAAEFIDGSI-ENYDAIILATGYKSNVPYWLKD-TEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL-- 395 (443)
Q Consensus 322 ~--v~~~~~~~v~~~~g~~-~~~D~vi~atG~~~~~~~~~~~-~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~-- 395 (443)
+ |++++++++++++|.. +++|++|||+|.+++ .+..+ .+++.|..|++.|++..+...+++||++|||+...
T Consensus 229 ~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~--~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~ 306 (405)
T COG1252 229 GTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS--PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP 306 (405)
T ss_pred CCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC--hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence 8 9999999999999985 999999999999999 56666 36776778999999888888999999999998432
Q ss_pred ---c----cchHHHHHHHHHHHHhhHH
Q 013435 396 ---L----GASIDARRISEDIEHQWNS 415 (443)
Q Consensus 396 ---~----~a~~~a~~~a~~i~~~l~~ 415 (443)
. .|..||..+|++|...+..
T Consensus 307 ~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 307 RPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 1 4667899999999888866
No 24
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.2e-32 Score=275.55 Aligned_cols=325 Identities=14% Similarity=0.185 Sum_probs=203.8
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecC---------CCCCccccc-CCCCceeeecCCccc----cCCCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERA---------NCIASLWQL-KTYDRLRLHLPKQFC----QLPLMPF 97 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~---------~~~gg~w~~-~~~~~~~~~~~~~~~----~~~~~~~ 97 (443)
...|||+|||+|++|+.+|..+++.|.+|+|+|+. ..+||++-+ .+.|...+....... ....+.+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 45689999999999999999999999999999962 457776544 444443322111110 0000100
Q ss_pred C------CCCCCCCC-----HHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEc
Q 013435 98 P------SNFPTYPT-----KQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVA 166 (443)
Q Consensus 98 ~------~~~~~~~~-----~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiA 166 (443)
. -+|..... ...+..++.+.+++.+++++.+. ++.++. .. |..+ + ..+.||+||||
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~-a~~vd~----~~--V~v~-G-----~~~~~D~LVIA 223 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGR-GKIVDP----HT--VDVD-G-----KLYTARNILIA 223 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEccC----CE--EEEC-C-----EEEECCEEEEe
Confidence 0 01100000 12223344455556676665442 333332 22 4443 2 57999999999
Q ss_pred cCCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCC
Q 013435 167 TGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGR 246 (443)
Q Consensus 167 tG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~ 246 (443)
|| ++|..|++||.+. +..++........+++|+|||+|.+|+|+|..|...+.+|+++.+.+ .++|..+
T Consensus 224 TG--s~p~~P~IpG~~~-----v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~il~~~d--- 292 (558)
T PLN02546 224 VG--GRPFIPDIPGIEH-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-KVLRGFD--- 292 (558)
T ss_pred CC--CCCCCCCCCChhh-----ccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-ccccccC---
Confidence 99 7888899998653 12222111222357899999999999999999999999999999887 3434221
Q ss_pred CccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--Cc
Q 013435 247 STFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IK 324 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~ 324 (443)
....+ ...+.+++.+|+++.+ +.
T Consensus 293 --------------~~~~~-----------------------------------------~l~~~L~~~GV~i~~~~~v~ 317 (558)
T PLN02546 293 --------------EEVRD-----------------------------------------FVAEQMSLRGIEFHTEESPQ 317 (558)
T ss_pred --------------HHHHH-----------------------------------------HHHHHHHHCCcEEEeCCEEE
Confidence 11111 1123344556777665 45
Q ss_pred EEeC--Cc-E--EEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---c
Q 013435 325 RLTH--HA-A--EFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---L 395 (443)
Q Consensus 325 ~~~~--~~-v--~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~ 395 (443)
++.. ++ + .+.+++...+|.||+|+|++|++..+ +...++..+++|+|.+| ++++|+.|+|||+|||+.. .
T Consensus 318 ~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD-~~l~Ts~p~IYAaGDv~~~~~l~ 396 (558)
T PLN02546 318 AIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVD-EYSRTSVPSIWAVGDVTDRINLT 396 (558)
T ss_pred EEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeEC-CCceeCCCCEEEeeccCCCcccH
Confidence 5532 22 2 23344445699999999999998444 34558877778999999 7888999999999999864 3
Q ss_pred ccchHHHHHHHHHHHHhhHHHHHhHhhhhccccCCCCCccc
Q 013435 396 LGASIDARRISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLE 436 (443)
Q Consensus 396 ~~a~~~a~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 436 (443)
..|..+|+.+|++|.+.-.........+...+..|+...+.
T Consensus 397 ~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VG 437 (558)
T PLN02546 397 PVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVG 437 (558)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhcc
Confidence 36778999999999864321111222333445555554444
No 25
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=8.8e-32 Score=268.13 Aligned_cols=303 Identities=18% Similarity=0.232 Sum_probs=196.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccc-cCCCCceeeecCCcccc----CCCCCCCCCCCCCCCH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQ-LKTYDRLRLHLPKQFCQ----LPLMPFPSNFPTYPTK 107 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 107 (443)
..||++||||||+|+++|..|++.|.+|+|+|+.. +||+|. ..+.|+..+........ ...+..... ......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 45899999999999999999999999999999987 888664 45555433221111110 011110000 011234
Q ss_pred HHHHHH-----------HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 108 QQFLTY-----------LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 108 ~~~~~~-----------l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
.++.++ +....++.+++++.++ ++.++. ..+.|...++ . ..++||+||+||| +.|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~~----~~~~v~~~~~---~-~~~~~d~lViAtG--s~p~~~ 149 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVDP----NTVRVMTEDG---E-QTYTAKNIILATG--SRPREL 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccC----CEEEEecCCC---c-EEEEeCEEEEeCC--CCCCCC
Confidence 455544 3334555677765553 433321 4444543221 1 6799999999999 555543
Q ss_pred CCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhh
Q 013435 177 YIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 177 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
||.+. .+..++++.........+++++|||+|.+|+|+|..|.+.|.+||++.|.+ .++|....
T Consensus 150 --pg~~~-~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~------------ 213 (462)
T PRK06416 150 --PGIEI-DGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDK------------ 213 (462)
T ss_pred --CCCCC-CCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCH------------
Confidence 45432 222333333222222356899999999999999999999999999999988 44443210
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC--c--
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH--A-- 330 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~--~-- 330 (443)
...+ .+.+.+.+.+|+++.+ +.++..+ +
T Consensus 214 -----~~~~-----------------------------------------~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~ 247 (462)
T PRK06416 214 -----EISK-----------------------------------------LAERALKKRGIKIKTGAKAKKVEQTDDGVT 247 (462)
T ss_pred -----HHHH-----------------------------------------HHHHHHHHcCCEEEeCCEEEEEEEeCCEEE
Confidence 1111 1123333456777766 5666532 3
Q ss_pred EEEcCC---cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHH
Q 013435 331 AEFIDG---SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDAR 403 (443)
Q Consensus 331 v~~~~g---~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~ 403 (443)
+.+.++ +++++|.||+|+|++|++..+ +...++..+ +|++.+| ++.+++.|+|||+|||+.. ...|..||+
T Consensus 248 v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~ 325 (462)
T PRK06416 248 VTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVD-EQLRTNVPNIYAIGDIVGGPMLAHKASAEGI 325 (462)
T ss_pred EEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeEC-CCCccCCCCEEEeeecCCCcchHHHHHHHHH
Confidence 334455 679999999999999998433 245577776 8999999 7778999999999999853 336788999
Q ss_pred HHHHHHHHh
Q 013435 404 RISEDIEHQ 412 (443)
Q Consensus 404 ~~a~~i~~~ 412 (443)
.+|.+|.+.
T Consensus 326 ~aa~ni~~~ 334 (462)
T PRK06416 326 IAAEAIAGN 334 (462)
T ss_pred HHHHHHcCC
Confidence 999999864
No 26
>PRK14694 putative mercuric reductase; Provisional
Probab=99.98 E-value=3e-31 Score=264.10 Aligned_cols=329 Identities=16% Similarity=0.178 Sum_probs=204.0
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCCcc-ccCCCCCCCCCCC---CCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPKQF-CQLPLMPFPSNFP---TYPT 106 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~ 106 (443)
...|||+||||||+|+++|..|++.|.+++|||+. .+||+|.+. +.|+..+...... ......++..... .-.+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 82 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD 82 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence 45689999999999999999999999999999996 588988652 2232221100000 0000000000000 0123
Q ss_pred HHHHHHHHHHHHHH------------c-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 107 KQQFLTYLETYTNH------------F-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 107 ~~~~~~~l~~~~~~------------~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
..++..+..+.... . ++++..+ ++..++. ..|.|++.++ +..+++||+||+||| +.|
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~----~~~~V~~~~g---~~~~~~~d~lViATG--s~p 152 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDE----RTLTVTLNDG---GEQTVHFDRAFIGTG--ARP 152 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecC----CEEEEEecCC---CeEEEECCEEEEeCC--CCC
Confidence 44444443332221 1 3333333 3555532 5677877653 225799999999999 788
Q ss_pred ccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhh
Q 013435 174 VVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSM 253 (443)
Q Consensus 174 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~ 253 (443)
..|++||.+.. ..+++.+ .......+++++|||+|.+|+|+|..|.+.|.+|+++.+. .++|....
T Consensus 153 ~~p~i~G~~~~--~~~~~~~-~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~~~~--------- 218 (468)
T PRK14694 153 AEPPVPGLAET--PYLTSTS-ALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQEDP--------- 218 (468)
T ss_pred CCCCCCCCCCC--ceEcchh-hhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCCCCH---------
Confidence 88999997652 1222221 1122234689999999999999999999999999999863 33443210
Q ss_pred hhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC--
Q 013435 254 CLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH-- 329 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~-- 329 (443)
...+ ...+.+.+.+|+++.+ +.++..+
T Consensus 219 --------~~~~-----------------------------------------~l~~~l~~~GI~v~~~~~v~~i~~~~~ 249 (468)
T PRK14694 219 --------AVGE-----------------------------------------AIEAAFRREGIEVLKQTQASEVDYNGR 249 (468)
T ss_pred --------HHHH-----------------------------------------HHHHHHHhCCCEEEeCCEEEEEEEcCC
Confidence 1111 1123333456666655 5555432
Q ss_pred cEEE-cCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHH
Q 013435 330 AAEF-IDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARR 404 (443)
Q Consensus 330 ~v~~-~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~ 404 (443)
.+.+ .++.++++|.||+|+|..|++..+ +...++.. ++|++.+| ++++|+.|+|||+|||+.. ...|..+|+.
T Consensus 250 ~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~ 327 (468)
T PRK14694 250 EFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRID-EHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSR 327 (468)
T ss_pred EEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeC-CCcccCCCCEEEEeecCCCcccHHHHHHHHHH
Confidence 2222 234579999999999999998433 23346664 67999999 7788999999999999854 3367889999
Q ss_pred HHHHHHHhhHHHHHhHhhhhccccCCCCCcccc
Q 013435 405 ISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 405 ~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
+|.+|.+... .......+...+..|+...+.+
T Consensus 328 aa~~i~~~~~-~~~~~~~p~~~~~~p~~a~vGl 359 (468)
T PRK14694 328 AAINMTGGDA-SLDLSAMPEVIFTDPQVATVGL 359 (468)
T ss_pred HHHHhcCCCc-ccccCCCCeEEECCCCeEEeeC
Confidence 9999975421 1222233444455565554443
No 27
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.98 E-value=3.2e-31 Score=263.95 Aligned_cols=332 Identities=15% Similarity=0.150 Sum_probs=199.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCccc-c----CCCCCCCCCCCCCCCH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQFC-Q----LPLMPFPSNFPTYPTK 107 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~ 107 (443)
.|||+||||||+|+++|..|++.|.+|+|+|+. .+||++.+ .+.|+..+....... . ...+.... ......
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~--~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG--EVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc--CcccCH
Confidence 489999999999999999999999999999986 56776544 334432211110000 0 00000000 011122
Q ss_pred HHHHHHHHHHHHHc--CCcccc-ceeEEEEEEe---CCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCC
Q 013435 108 QQFLTYLETYTNHF--GLDPVF-NTTVVNAEYD---HLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGM 181 (443)
Q Consensus 108 ~~~~~~l~~~~~~~--~~~v~~-~~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~ 181 (443)
..+....+...++. ++.... ...|+.++.. -+...+.|...++ +..+++||+||+||| +.|..| ||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g---~~~~~~~d~lViATG--s~p~~~--pg~ 153 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDG---GTETVTFDNAIIATG--SSTRLL--PGT 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCC---CeeEEEcCEEEEeCC--CCCCCC--CCC
Confidence 33333222221111 111111 1134433321 1124555554332 235799999999999 566543 553
Q ss_pred CCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchh
Q 013435 182 DGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPV 261 (443)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~ 261 (443)
+. .+.++...+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+.
T Consensus 154 ~~-~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~----------------- 213 (466)
T PRK07818 154 SL-SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDA----------------- 213 (466)
T ss_pred CC-CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCH-----------------
Confidence 31 122232222111 12356899999999999999999999999999999888 45554321
Q ss_pred HHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc----EEEc-
Q 013435 262 RLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA----AEFI- 334 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~----v~~~- 334 (443)
.. .....+.+.+.+|+++.+ ++++..++ +.+.
T Consensus 214 ~~-----------------------------------------~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~ 252 (466)
T PRK07818 214 EV-----------------------------------------SKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSK 252 (466)
T ss_pred HH-----------------------------------------HHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEe
Confidence 01 111123344557777766 66665432 3333
Q ss_pred -CCc--EEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHHHHH
Q 013435 335 -DGS--IENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARRISE 407 (443)
Q Consensus 335 -~g~--~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~~a~ 407 (443)
+|+ ++++|.||+|+|++|++..+ +...++..+++|++.+| ++++|+.|+|||+|||+.. ...|..||+.+|+
T Consensus 253 ~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~ 331 (466)
T PRK07818 253 KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAID-DYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAE 331 (466)
T ss_pred cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeC-CCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHH
Confidence 563 69999999999999998443 34457776778999999 7788999999999999864 3368889999999
Q ss_pred HHHHhhHHHH-HhHhhhhccccCCCCCcccc
Q 013435 408 DIEHQWNSEA-KKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 408 ~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 437 (443)
+|++.-.... .....+...+..|+...+.+
T Consensus 332 ~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGl 362 (466)
T PRK07818 332 TIAGAETLELGDYRMMPRATFCQPQVASFGL 362 (466)
T ss_pred HHcCCCCCccCccCCCCeEEECCCCeEEEeC
Confidence 9986421111 22223344455566555543
No 28
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.98 E-value=2e-31 Score=264.87 Aligned_cols=304 Identities=17% Similarity=0.190 Sum_probs=190.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCc-cc---cCCCCCCCCCCCCCCCH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQ-FC---QLPLMPFPSNFPTYPTK 107 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~ 107 (443)
..|||+||||||+|+.+|..|++.|.+|+|+|+.+.+||+|.+ .+.|+..+..... .. .......... ....+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~ 81 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKIDI 81 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCH
Confidence 4589999999999999999999999999999998788886644 4555432211000 00 0000000000 001122
Q ss_pred HHHHHHH-----------HHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCc-c
Q 013435 108 QQFLTYL-----------ETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV-V 175 (443)
Q Consensus 108 ~~~~~~l-----------~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~-~ 175 (443)
..+.++. ...+++.+++++.++ +..++ . ..+.|...++ +..+++||+||+||| +.|. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~~--~--~~v~v~~~~g---~~~~~~~d~lViATG--s~p~~~ 151 (471)
T PRK06467 82 DKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFTG--G--NTLEVTGEDG---KTTVIEFDNAIIAAG--SRPIQL 151 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--CEEEEecCCC---ceEEEEcCEEEEeCC--CCCCCC
Confidence 3333322 233445577765553 32222 1 4555554332 235799999999999 5665 3
Q ss_pred CCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhh
Q 013435 176 PYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCL 255 (443)
Q Consensus 176 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~ 255 (443)
|.+++... .++.+.+... ....+++++|||+|.+|+|+|..+.+.|.+||++.+.+ .++|..+.
T Consensus 152 p~~~~~~~---~v~~~~~~~~-~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~----------- 215 (471)
T PRK06467 152 PFIPHDDP---RIWDSTDALE-LKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADK----------- 215 (471)
T ss_pred CCCCCCCC---cEEChHHhhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCH-----------
Confidence 44554221 2232222222 22346899999999999999999999999999999988 45554321
Q ss_pred hhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe--CCc-
Q 013435 256 LKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT--HHA- 330 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~--~~~- 330 (443)
...+.+ .+.+.+. +.++.+ ++++. +++
T Consensus 216 ------~~~~~~-----------------------------------------~~~l~~~-v~i~~~~~v~~i~~~~~~~ 247 (471)
T PRK06467 216 ------DIVKVF-----------------------------------------TKRIKKQ-FNIMLETKVTAVEAKEDGI 247 (471)
T ss_pred ------HHHHHH-----------------------------------------HHHHhhc-eEEEcCCEEEEEEEcCCEE
Confidence 111111 1122222 444443 34333 222
Q ss_pred -EEEcC--C--cEEcccEEEEccCCCCCCCCCc-cCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHH
Q 013435 331 -AEFID--G--SIENYDAIILATGYKSNVPYWL-KDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASID 401 (443)
Q Consensus 331 -v~~~~--g--~~~~~D~vi~atG~~~~~~~~~-~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~ 401 (443)
+.+.+ + +++++|.||+|+|++|++..+. ...++..+++|+|.+| ++++|+.|+|||+|||+.. ...|..+
T Consensus 248 ~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd-~~~~t~~p~VyAiGDv~~~~~la~~A~~e 326 (471)
T PRK06467 248 YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVD-KQCRTNVPHIFAIGDIVGQPMLAHKGVHE 326 (471)
T ss_pred EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeC-CCcccCCCCEEEehhhcCCcccHHHHHHH
Confidence 23333 2 3699999999999999984433 3347777788999999 7788999999999999753 3367889
Q ss_pred HHHHHHHHHHh
Q 013435 402 ARRISEDIEHQ 412 (443)
Q Consensus 402 a~~~a~~i~~~ 412 (443)
|+.+|.+|.+.
T Consensus 327 G~~aa~~i~g~ 337 (471)
T PRK06467 327 GHVAAEVIAGK 337 (471)
T ss_pred HHHHHHHHcCC
Confidence 99999999864
No 29
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.98 E-value=1.1e-31 Score=267.37 Aligned_cols=307 Identities=17% Similarity=0.188 Sum_probs=191.2
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCc----cccCCCCCCCCCCCCCCCH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQ----FCQLPLMPFPSNFPTYPTK 107 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 107 (443)
+.|||+||||||+|+++|..|++.|.+++|||+ ..+||+|.+ .+.|+..+..... ...++.+..... ....+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~ 79 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDF 79 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCH
Confidence 358999999999999999999999999999999 678998764 3333221111000 001111111000 123456
Q ss_pred HHHHHHHHHHHHHcCCcc-c---cceeEEEEEEeC-CCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCC
Q 013435 108 QQFLTYLETYTNHFGLDP-V---FNTTVVNAEYDH-LSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMD 182 (443)
Q Consensus 108 ~~~~~~l~~~~~~~~~~v-~---~~~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~ 182 (443)
.++.++.++..+++...+ . ....|.-+.-.. ..+...+.+ ++ .+++||+||+|||. . .|.+||..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~-----~~~~~d~lIiATGs--~--~p~ipg~~ 149 (460)
T PRK06292 80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NG-----ERIEAKNIVIATGS--R--VPPIPGVW 149 (460)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-Cc-----EEEEeCEEEEeCCC--C--CCCCCCCc
Confidence 777776666555432221 0 001111111000 001112444 22 67999999999995 4 45566653
Q ss_pred CCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhH
Q 013435 183 GFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVR 262 (443)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~ 262 (443)
...+..+.++.........+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ .++|..+ ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d-----------------~~ 211 (460)
T PRK06292 150 LILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLED-----------------PE 211 (460)
T ss_pred ccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchh-----------------HH
Confidence 22222233332222233457899999999999999999999999999999988 3444221 01
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC---cEEE--cC
Q 013435 263 LVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH---AAEF--ID 335 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~---~v~~--~~ 335 (443)
..+. +.+.+++. |+++.+ +.++..+ .+.+ .+
T Consensus 212 ~~~~-----------------------------------------~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~ 249 (460)
T PRK06292 212 VSKQ-----------------------------------------AQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKG 249 (460)
T ss_pred HHHH-----------------------------------------HHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcC
Confidence 1111 12223334 555554 5555432 2442 23
Q ss_pred C--cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHHHHHHH
Q 013435 336 G--SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARRISEDI 409 (443)
Q Consensus 336 g--~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~~a~~i 409 (443)
+ +++++|.||+|+|++|++..+ +...++..+++|++.+| ++.+|+.|+|||+|||+.. ...|..||+.+|.+|
T Consensus 250 ~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd-~~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i 328 (460)
T PRK06292 250 GKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVD-EHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENA 328 (460)
T ss_pred CceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeEC-CCcccCCCCEEEEEecCCCccchhHHHHHHHHHHHHh
Confidence 3 469999999999999998543 34457777788999999 7788999999999999864 346889999999999
Q ss_pred HHh
Q 013435 410 EHQ 412 (443)
Q Consensus 410 ~~~ 412 (443)
.+.
T Consensus 329 ~~~ 331 (460)
T PRK06292 329 AGD 331 (460)
T ss_pred cCC
Confidence 864
No 30
>PRK14727 putative mercuric reductase; Provisional
Probab=99.98 E-value=4.2e-31 Score=263.35 Aligned_cols=330 Identities=16% Similarity=0.154 Sum_probs=203.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCCccc----cCCCCCCCCCCCCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPKQFC----QLPLMPFPSNFPTYPT 106 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 106 (443)
...||++|||+|++|+++|..|+++|.+++++|+.+.+||+|.+. +.|+..+..+.... ..+...+....+. ..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~-~~ 92 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS-ID 92 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc-cC
Confidence 356899999999999999999999999999999988899998753 44543322211111 1111111100000 12
Q ss_pred HHHHHHHHHHHHH------------Hc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 107 KQQFLTYLETYTN------------HF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 107 ~~~~~~~l~~~~~------------~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
...+......... .. ++++..+. . ...+ ...+.|...++ +..+++||+||+||| +.|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~-a---~f~~-~~~v~v~~~~g---~~~~~~~d~lViATG--s~p 162 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY-A---RFKD-GNTLVVRLHDG---GERVLAADRCLIATG--STP 162 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE-E---EEec-CCEEEEEeCCC---ceEEEEeCEEEEecC--CCC
Confidence 2333222221111 11 23332221 1 1122 25666765443 225799999999999 788
Q ss_pred ccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhh
Q 013435 174 VVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSM 253 (443)
Q Consensus 174 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~ 253 (443)
..|++||..... .+...+... ....+++++|||+|.+|+|+|..+...|.+||++.+.. +++..+.
T Consensus 163 ~~p~i~G~~~~~--~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~--~l~~~d~--------- 228 (479)
T PRK14727 163 TIPPIPGLMDTP--YWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARST--LLFREDP--------- 228 (479)
T ss_pred CCCCCCCcCccc--eecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC--CCCcchH---------
Confidence 889999875421 122111111 12246899999999999999999999999999998743 3333210
Q ss_pred hhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe--CC
Q 013435 254 CLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT--HH 329 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~--~~ 329 (443)
...+ .+.+.+++.+|+++.+ ++++. .+
T Consensus 229 --------~~~~-----------------------------------------~l~~~L~~~GV~i~~~~~V~~i~~~~~ 259 (479)
T PRK14727 229 --------LLGE-----------------------------------------TLTACFEKEGIEVLNNTQASLVEHDDN 259 (479)
T ss_pred --------HHHH-----------------------------------------HHHHHHHhCCCEEEcCcEEEEEEEeCC
Confidence 0111 1123334456666655 55543 22
Q ss_pred cEEE-cCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHH
Q 013435 330 AAEF-IDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARR 404 (443)
Q Consensus 330 ~v~~-~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~ 404 (443)
++.+ .++.++++|.||+|+|+.|++..+ +...++..+++|++.+| ++++|+.|+|||+|||+.. ...|..+|+.
T Consensus 260 ~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~ 338 (479)
T PRK14727 260 GFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVN-PAMETSAPDIYAAGDCSDLPQFVYVAAAAGSR 338 (479)
T ss_pred EEEEEEcCCeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEEC-CCeecCCCCEEEeeecCCcchhhhHHHHHHHH
Confidence 3322 233468999999999999998444 33447777788999999 7788999999999999854 3367889999
Q ss_pred HHHHHHHhhHHHHHhHhhhhccccCCCCCcccc
Q 013435 405 ISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 405 ~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
+|.+|.+.... ......+...+..|+...+.+
T Consensus 339 aa~~i~g~~~~-~~~~~~p~~~~~~p~ia~vGl 370 (479)
T PRK14727 339 AGINMTGGNAT-LDLSAMPAVIFTDPQVATVGL 370 (479)
T ss_pred HHHHHcCCCcc-cccccCCcEEEecCceeeeeC
Confidence 99999864321 122222333455555544443
No 31
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.98 E-value=1.9e-31 Score=266.15 Aligned_cols=331 Identities=14% Similarity=0.155 Sum_probs=205.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC--------CCCcccc-cCCCCceeeecCCcccc-C----CCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN--------CIASLWQ-LKTYDRLRLHLPKQFCQ-L----PLMPFP 98 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~--------~~gg~w~-~~~~~~~~~~~~~~~~~-~----~~~~~~ 98 (443)
.+|||+||||||+|+++|..++++|.+|+|+|+.. .+||++- ..++|+..+........ + ..+.+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~ 83 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK 83 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC
Confidence 36999999999999999999999999999999631 3788653 34555432211100000 0 001110
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEE------eCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 99 SNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEY------DHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~------~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
. ..-....++.+++....++++..+....++..|+. ..+... |...+. ++...++||+|||||| +.
T Consensus 84 ~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~--v~v~~~--~~~~~i~~d~lIIATG--s~ 155 (499)
T PTZ00052 84 T--SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHT--VSYGDN--SQEETITAKYILIATG--GR 155 (499)
T ss_pred C--CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCE--EEEeeC--CCceEEECCEEEEecC--CC
Confidence 0 01235677777777776665444433222221111 111133 443321 1225799999999999 67
Q ss_pred CccC-CCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccch
Q 013435 173 EVVP-YIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGL 251 (443)
Q Consensus 173 p~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~ 251 (443)
|..| .+||...+ .+.+.+.. .....+++++|||+|.+|+|+|..|+..|.+||++.++. +++..+.
T Consensus 156 p~~p~~i~G~~~~---~~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~--~l~~~d~------- 222 (499)
T PTZ00052 156 PSIPEDVPGAKEY---SITSDDIF-SLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI--PLRGFDR------- 222 (499)
T ss_pred CCCCCCCCCccce---eecHHHHh-hhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc--ccccCCH-------
Confidence 7777 48886532 12221111 112246799999999999999999999999999998742 3332211
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC-
Q 013435 252 SMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH- 328 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~- 328 (443)
... ..+.+.+++.+|+++.+ +.++..
T Consensus 223 ----------~~~-----------------------------------------~~l~~~l~~~GV~i~~~~~v~~v~~~ 251 (499)
T PTZ00052 223 ----------QCS-----------------------------------------EKVVEYMKEQGTLFLEGVVPINIEKM 251 (499)
T ss_pred ----------HHH-----------------------------------------HHHHHHHHHcCCEEEcCCeEEEEEEc
Confidence 111 11123344455666665 344432
Q ss_pred -C--cEEEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchH
Q 013435 329 -H--AAEFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASI 400 (443)
Q Consensus 329 -~--~v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~ 400 (443)
+ .+.+.+|+++++|.||+|+|++|++..+ +...++..+++|++.++ +. +|+.|+|||+|||+.. ...|..
T Consensus 252 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~-~~-~Ts~p~IyAiGDv~~~~~~l~~~A~~ 329 (499)
T PTZ00052 252 DDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAP-ND-CTNIPNIFAVGDVVEGRPELTPVAIK 329 (499)
T ss_pred CCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeC-CC-cCCCCCEEEEEEecCCCcccHHHHHH
Confidence 1 2556678889999999999999998433 23457777778886666 34 8999999999998742 236788
Q ss_pred HHHHHHHHHHHhhHHHHHhHhhhhccccCCCCCcccc
Q 013435 401 DARRISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 401 ~a~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
+|+.+|++|.............+...+..|+...+.+
T Consensus 330 ~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGl 366 (499)
T PTZ00052 330 AGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGY 366 (499)
T ss_pred HHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecC
Confidence 9999999997643222233334455566777666554
No 32
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.98 E-value=1.2e-30 Score=259.22 Aligned_cols=307 Identities=16% Similarity=0.151 Sum_probs=198.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCcc----ccCCCCCCC----CCCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQF----CQLPLMPFP----SNFPTY 104 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~ 104 (443)
|.|++|||+|++|+.+|..+++.|.+|+++|+.. +||++.+ .+.|+..+...... .....+... ... .
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~--~ 77 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEA--R 77 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccc--c
Confidence 4689999999999999999999999999999875 7886644 33333221111000 000000000 000 0
Q ss_pred CCHHHH-----------HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 105 PTKQQF-----------LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 105 ~~~~~~-----------~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
.....+ ...+...+++.+++++.+. +..++...+...+.|...++ +..++.||+||+||| +.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g---~~~~~~~d~lViATG--s~p 151 (466)
T PRK07845 78 VDLPAVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADG---GEETLDADVVLIATG--ASP 151 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCC---ceEEEecCEEEEcCC--CCC
Confidence 111222 2234445566677776654 44433111125555655443 224799999999999 566
Q ss_pred ccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhh
Q 013435 174 VVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSM 253 (443)
Q Consensus 174 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~ 253 (443)
..|+.++... ..+++.....+ ....+++++|||+|.+|+|+|..|++.|.+||++.+.+ .++|..+.
T Consensus 152 ~~~p~~~~~~--~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~--------- 218 (466)
T PRK07845 152 RILPTAEPDG--ERILTWRQLYD-LDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDA--------- 218 (466)
T ss_pred CCCCCCCCCC--ceEEeehhhhc-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCH---------
Confidence 6554433221 12333333322 22346899999999999999999999999999999887 45454321
Q ss_pred hhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe--CC
Q 013435 254 CLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT--HH 329 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~--~~ 329 (443)
... ..+.+.+.+.+|+++.+ +.++. .+
T Consensus 219 --------~~~-----------------------------------------~~l~~~L~~~gV~i~~~~~v~~v~~~~~ 249 (466)
T PRK07845 219 --------DAA-----------------------------------------EVLEEVFARRGMTVLKRSRAESVERTGD 249 (466)
T ss_pred --------HHH-----------------------------------------HHHHHHHHHCCcEEEcCCEEEEEEEeCC
Confidence 001 11123344556777765 55653 23
Q ss_pred c--EEEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHH
Q 013435 330 A--AEFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDAR 403 (443)
Q Consensus 330 ~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~ 403 (443)
+ +.+.+|+++++|.||+++|++|++..+ +...++..+++|++.+| ++++|+.|+|||+||++.. ...|..||+
T Consensus 250 ~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~ 328 (466)
T PRK07845 250 GVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVD-RVSRTSVPGIYAAGDCTGVLPLASVAAMQGR 328 (466)
T ss_pred EEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeEC-CCcccCCCCEEEEeeccCCccchhHHHHHHH
Confidence 3 455678899999999999999998443 34557877788999999 7788999999999999864 336788999
Q ss_pred HHHHHHHHh
Q 013435 404 RISEDIEHQ 412 (443)
Q Consensus 404 ~~a~~i~~~ 412 (443)
.++.++.+.
T Consensus 329 ~aa~~i~g~ 337 (466)
T PRK07845 329 IAMYHALGE 337 (466)
T ss_pred HHHHHHcCC
Confidence 999999864
No 33
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.97 E-value=8.1e-31 Score=254.37 Aligned_cols=281 Identities=21% Similarity=0.296 Sum_probs=194.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
+++|+|||||++|+++|..|.+. +.+|+|+++++... |....+ + ..+.......++.
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~l---------~-----~~~~~~~~~~~~~ 60 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPDL---------S-----HVFSQGQRADDLT 60 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCcC---------c-----HHHhCCCCHHHhh
Confidence 46899999999999999999886 46999999987421 111000 0 0001112334444
Q ss_pred H-HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 112 T-YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 112 ~-~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
. ...+++++++++++.+++|++++... .. |.++. ..+.||+||+||| +.|..|++||.+. .+.
T Consensus 61 ~~~~~~~~~~~gv~~~~~~~V~~id~~~--~~--v~~~~------~~~~yd~LVlATG--~~~~~p~i~G~~~----v~~ 124 (377)
T PRK04965 61 RQSAGEFAEQFNLRLFPHTWVTDIDAEA--QV--VKSQG------NQWQYDKLVLATG--ASAFVPPIPGREL----MLT 124 (377)
T ss_pred cCCHHHHHHhCCCEEECCCEEEEEECCC--CE--EEECC------eEEeCCEEEECCC--CCCCCCCCCCCce----EEE
Confidence 3 24566777899998899999998765 33 55432 6899999999999 6778888988653 222
Q ss_pred cCCCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHH
Q 013435 191 SSSYKT-----GELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVD 265 (443)
Q Consensus 191 ~~~~~~-----~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (443)
.....+ .....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+. +++.. ++.....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~-~l~~~----------------~~~~~~~ 187 (377)
T PRK04965 125 LNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS-LLASL----------------MPPEVSS 187 (377)
T ss_pred ECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc-ccchh----------------CCHHHHH
Confidence 111111 1123568999999999999999999999999999999873 32221 1111111
Q ss_pred HHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC----cEEEcCCcEE
Q 013435 266 QFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH----AAEFIDGSIE 339 (443)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~----~v~~~~g~~~ 339 (443)
. +.+.+.+.+++++.+ +.++..+ .+.+.+|+++
T Consensus 188 ~-----------------------------------------l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i 226 (377)
T PRK04965 188 R-----------------------------------------LQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSI 226 (377)
T ss_pred H-----------------------------------------HHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEE
Confidence 1 123333456666654 5666543 2667889999
Q ss_pred cccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------cccchHHHHHHHHHHHHh
Q 013435 340 NYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 340 ~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------~~~a~~~a~~~a~~i~~~ 412 (443)
++|.||+|+|..|++ .+....++.. ++| +.+| ++++|+.|+|||+|||+.. +..|..||+.+|++|.+.
T Consensus 227 ~~D~vI~a~G~~p~~-~l~~~~gl~~-~~g-i~vd-~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~ 302 (377)
T PRK04965 227 EVDAVIAAAGLRPNT-ALARRAGLAV-NRG-IVVD-SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQ 302 (377)
T ss_pred ECCEEEECcCCCcch-HHHHHCCCCc-CCC-EEEC-CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCC
Confidence 999999999999997 5666667765 446 7888 6788899999999999742 224678999999999875
Q ss_pred h
Q 013435 413 W 413 (443)
Q Consensus 413 l 413 (443)
-
T Consensus 303 ~ 303 (377)
T PRK04965 303 N 303 (377)
T ss_pred C
Confidence 4
No 34
>PRK13748 putative mercuric reductase; Provisional
Probab=99.97 E-value=6e-31 Score=268.49 Aligned_cols=328 Identities=15% Similarity=0.169 Sum_probs=203.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCccc----cCCC-CCCCCCCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQFC----QLPL-MPFPSNFPTYPT 106 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~ 106 (443)
..|||+||||||+|+++|..|+++|.+|+|||+. .+||+|.+ .+.|+..+....... ..+. ..+....+ ...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~ 174 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP-TID 174 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCC-ccC
Confidence 3599999999999999999999999999999998 78998865 344443321111100 0010 01100000 123
Q ss_pred HHHHHHHHHHHH------------HHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 107 KQQFLTYLETYT------------NHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 107 ~~~~~~~l~~~~------------~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
...+.++..... ... ++++..+ ++..++ . ..+.|...++ +...++||+||+||| +.|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~--~~~~v~~~~g---~~~~~~~d~lviAtG--s~p 244 (561)
T PRK13748 175 RSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKD--D--QTLIVRLNDG---GERVVAFDRCLIATG--ASP 244 (561)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEec--C--CEEEEEeCCC---ceEEEEcCEEEEcCC--CCC
Confidence 344443322222 222 3343333 233222 1 5556665432 225799999999999 788
Q ss_pred ccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhh
Q 013435 174 VVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSM 253 (443)
Q Consensus 174 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~ 253 (443)
..|.+||.+... .+...+.. .....+++++|||+|.+|+|+|..|.+.|.+|+++.|.. +++..+.
T Consensus 245 ~~p~i~g~~~~~--~~~~~~~~-~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d~--------- 310 (561)
T PRK13748 245 AVPPIPGLKETP--YWTSTEAL-VSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFREDP--------- 310 (561)
T ss_pred CCCCCCCCCccc--eEccHHHh-hcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccCH---------
Confidence 889999876421 12211111 112346899999999999999999999999999998854 3333211
Q ss_pred hhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--C
Q 013435 254 CLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--H 329 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~ 329 (443)
... ..+.+.+.+.+|+++.+ ++++.. +
T Consensus 311 --------~~~-----------------------------------------~~l~~~l~~~gI~i~~~~~v~~i~~~~~ 341 (561)
T PRK13748 311 --------AIG-----------------------------------------EAVTAAFRAEGIEVLEHTQASQVAHVDG 341 (561)
T ss_pred --------HHH-----------------------------------------HHHHHHHHHCCCEEEcCCEEEEEEecCC
Confidence 011 11123334456666655 555532 2
Q ss_pred cEEE-cCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHH
Q 013435 330 AAEF-IDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARR 404 (443)
Q Consensus 330 ~v~~-~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~ 404 (443)
.+.+ .++.++++|.||+|+|++|++..+ +...++..+++|+|.+| ++++|+.|+|||+|||+.. ...|..+|+.
T Consensus 342 ~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~ 420 (561)
T PRK13748 342 EFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVID-QGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTR 420 (561)
T ss_pred EEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHH
Confidence 2222 233469999999999999998443 34557877788999999 7888999999999999854 3367889999
Q ss_pred HHHHHHHhhHHHHHhHhhhhccccCCCCCcccc
Q 013435 405 ISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 405 ~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
+|.+|.+.-. .......+...+..|+...+.+
T Consensus 421 aa~~i~g~~~-~~~~~~~p~~~~~~p~~a~vGl 452 (561)
T PRK13748 421 AAINMTGGDA-ALDLTAMPAVVFTDPQVATVGY 452 (561)
T ss_pred HHHHHcCCCc-ccCCCCCCeEEEccCCceeeeC
Confidence 9999975421 1112222233355555555443
No 35
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.97 E-value=1.9e-31 Score=262.00 Aligned_cols=295 Identities=16% Similarity=0.176 Sum_probs=202.9
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
....+++|||||||++|+.+|..|.+.+.+|+|||+++.+- |..+ ++ ....+.....+
T Consensus 6 ~~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~----------l~-----~~~~g~~~~~~ 63 (424)
T PTZ00318 6 ARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL----------LP-----QTTTGTLEFRS 63 (424)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh----------HH-----HhcccCCChHH
Confidence 34556789999999999999999977778999999987431 0000 00 00111123344
Q ss_pred HHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecC---CCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcc
Q 013435 110 FLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGL---KQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRG 186 (443)
Q Consensus 110 ~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~---~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~ 186 (443)
+...++..+...++++ ...+|++|+.++ ..+.+...... .+...++.||+||+||| +.+..|.+||..++
T Consensus 64 ~~~~~~~~~~~~~~~~-i~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g~~i~yD~LViAtG--s~~~~~~ipG~~e~-- 136 (424)
T PTZ00318 64 ICEPVRPALAKLPNRY-LRAVVYDVDFEE--KRVKCGVVSKSNNANVNTFSVPYDKLVVAHG--ARPNTFNIPGVEER-- 136 (424)
T ss_pred hHHHHHHHhccCCeEE-EEEEEEEEEcCC--CEEEEecccccccccCCceEecCCEEEECCC--cccCCCCCCCHHHc--
Confidence 5555566666666654 456799999876 66545321110 00115799999999999 67778888886542
Q ss_pred cEeecCCCCC---------------------C-CCCCCCeEEEEccCCCHHHHHHHHhhc--------------CCccEE
Q 013435 187 PIFHSSSYKT---------------------G-ELFRDKNVLVVGCGNSGMEVSLDLCNY--------------NARPSL 230 (443)
Q Consensus 187 ~~~~~~~~~~---------------------~-~~~~~~~v~ViG~G~~~~e~a~~l~~~--------------g~~Vt~ 230 (443)
.+..+.+.+ . .....++++|||+|.+|+|+|..|++. +.+|++
T Consensus 137 -~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtl 215 (424)
T PTZ00318 137 -AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTV 215 (424)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEE
Confidence 111111100 0 011235899999999999999999863 578999
Q ss_pred EEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchh
Q 013435 231 VVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLA 310 (443)
Q Consensus 231 i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (443)
+++.+ .++|... +.. .....+
T Consensus 216 v~~~~-~ll~~~~-----------------~~~-----------------------------------------~~~~~~ 236 (424)
T PTZ00318 216 LEAGS-EVLGSFD-----------------QAL-----------------------------------------RKYGQR 236 (424)
T ss_pred EcCCC-cccccCC-----------------HHH-----------------------------------------HHHHHH
Confidence 99887 3334211 111 112234
Q ss_pred hhcCCCeEEecC--CcEEeCCcEEEcCCcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEE
Q 013435 311 KIRSGNIKVCRA--IKRLTHHAAEFIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAV 388 (443)
Q Consensus 311 ~~~~~~v~v~~~--v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifai 388 (443)
.+.+.+|+++.+ +.++.++.+.+++|+++++|.+|+++|.+|+ .+....++..+++|++.+|...+.++.|+|||+
T Consensus 237 ~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~--~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAi 314 (424)
T PTZ00318 237 RLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG--PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFAL 314 (424)
T ss_pred HHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc--chhhhcCCcccCCCcEEeCCCcccCCCCCEEEE
Confidence 455678888876 8889888999999999999999999999998 466666777677899999944444789999999
Q ss_pred eeccCC--------cccchHHHHHHHHHHHHhhHH
Q 013435 389 GFNKRG--------LLGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 389 Gd~~~~--------~~~a~~~a~~~a~~i~~~l~~ 415 (443)
|||+.. ...|..||+.+|++|...+..
T Consensus 315 GD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 315 GDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred eccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 999852 124678999999999988854
No 36
>PTZ00058 glutathione reductase; Provisional
Probab=99.97 E-value=8.7e-31 Score=262.04 Aligned_cols=332 Identities=14% Similarity=0.185 Sum_probs=202.1
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCcccc----CCCCCCC----CCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQFCQ----LPLMPFP----SNF 101 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~----~~~~~~~----~~~ 101 (443)
..+.||++|||||++|+++|..+++.|.+|+|||+. .+||++-+ .+.|+..+........ ...+... .++
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 357899999999999999999999999999999997 57886543 4455443322222111 0001000 010
Q ss_pred CCCC-CHHHH----HHHHHHHHHHcCCccccceeE-EE---EE-----E------eCCCCeEEEE------EeecCCCcE
Q 013435 102 PTYP-TKQQF----LTYLETYTNHFGLDPVFNTTV-VN---AE-----Y------DHLSRLWRVK------TQQGLKQEE 155 (443)
Q Consensus 102 ~~~~-~~~~~----~~~l~~~~~~~~~~v~~~~~V-~~---i~-----~------~~~~~~~~v~------~~~~~~~~~ 155 (443)
+... ..+++ .+.+.+..++.++++..+... .+ +. . ..+.+..+|. ..++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g----- 198 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG----- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC-----
Confidence 0000 11222 222334445567776554421 10 00 0 0000222232 1222
Q ss_pred EEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 156 TVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 156 ~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..++||+|||||| +.|..|.+||.+. ++.+.++.... .+++++|||+|.+|+|+|..+...|.+||++.+++
T Consensus 199 ~~i~ad~lVIATG--S~P~~P~IpG~~~----v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 199 QVIEGKNILIAVG--NKPIFPDVKGKEF----TISSDDFFKIK--EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred cEEECCEEEEecC--CCCCCCCCCCcee----EEEHHHHhhcc--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 5799999999999 7888899998642 23222222211 27899999999999999999999999999999988
Q ss_pred CccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCC
Q 013435 236 VHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSG 315 (443)
Q Consensus 236 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (443)
.++|..+. ... ..+.+.+++.
T Consensus 271 -~il~~~d~-----------------~i~-----------------------------------------~~l~~~L~~~ 291 (561)
T PTZ00058 271 -RLLRKFDE-----------------TII-----------------------------------------NELENDMKKN 291 (561)
T ss_pred -cccccCCH-----------------HHH-----------------------------------------HHHHHHHHHC
Confidence 44443321 111 1122334455
Q ss_pred CeEEecC--CcEEeCC---cE--EEcCC-cEEcccEEEEccCCCCCCCCCccC-cCcCccCCCCcCCCCCCCCcCCCceE
Q 013435 316 NIKVCRA--IKRLTHH---AA--EFIDG-SIENYDAIILATGYKSNVPYWLKD-TEMFSEKDGFPRMEFPNGWKGAHGLY 386 (443)
Q Consensus 316 ~v~v~~~--v~~~~~~---~v--~~~~g-~~~~~D~vi~atG~~~~~~~~~~~-~~l~~~~~G~i~~~~~~~~~~~~~if 386 (443)
+|+++.+ +.++..+ ++ .+.++ +++++|.|++|+|++|++..+-.+ .++. +++|+|.+| ++++|+.|+||
T Consensus 292 GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VD-e~lqTs~p~IY 369 (561)
T PTZ00058 292 NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVD-DNQRTSVKHIY 369 (561)
T ss_pred CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEEC-cCCccCCCCEE
Confidence 6777665 5555532 23 33344 479999999999999998433222 2343 367999999 78889999999
Q ss_pred EEeeccC----------------------------------Ccc---cchHHHHHHHHHHHHhhHHHHHhHhhhhccccC
Q 013435 387 AVGFNKR----------------------------------GLL---GASIDARRISEDIEHQWNSEAKKLMAFSRSLPL 429 (443)
Q Consensus 387 aiGd~~~----------------------------------~~~---~a~~~a~~~a~~i~~~l~~~~~~~~~~~~~~~~ 429 (443)
|+|||+. ... .|.++|+.+|++|.+...........+...+..
T Consensus 370 A~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~~~ip~~vft~ 449 (561)
T PTZ00058 370 AVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSH 449 (561)
T ss_pred EeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCCCCCCeEEeCC
Confidence 9999986 211 577899999999986422112222233333545
Q ss_pred CCCCcccc
Q 013435 430 PPNQDLEF 437 (443)
Q Consensus 430 ~~~~~~~~ 437 (443)
|+...+.+
T Consensus 450 peiA~vGl 457 (561)
T PTZ00058 450 PPIGTIGL 457 (561)
T ss_pred chheeeeC
Confidence 55544443
No 37
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.97 E-value=5.2e-31 Score=260.13 Aligned_cols=275 Identities=18% Similarity=0.244 Sum_probs=186.2
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
+...++|+|||+|++|+++|..|++.|++|+|+|+.+.+||.+... ++ .+....++
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip---------~~~~~~~~ 185 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IP---------EFRLPKEI 185 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CC---------CccCCHHH
Confidence 3566899999999999999999999999999999998888765321 11 11122455
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
.....+...+.+++++.++.+ . .. +++.+ ....||+||+|||+ +.|..|.+||.+. .+ +++
T Consensus 186 ~~~~~~~l~~~gv~~~~~~~v------~--~~--v~~~~------~~~~yd~viiAtGa-~~p~~~~ipG~~~-~g-v~~ 246 (449)
T TIGR01316 186 VVTEIKTLKKLGVTFRMNFLV------G--KT--ATLEE------LFSQYDAVFIGTGA-GLPKLMNIPGEEL-CG-VYS 246 (449)
T ss_pred HHHHHHHHHhCCcEEEeCCcc------C--Cc--CCHHH------HHhhCCEEEEeCCC-CCCCcCCCCCCCC-CC-cEE
Confidence 555556667778888777643 1 11 33332 23468999999996 2677788888653 11 121
Q ss_pred cCCC--------------CCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhh
Q 013435 191 SSSY--------------KTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 191 ~~~~--------------~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
..++ .......+++|+|||+|++|+|+|..+.+.|.+||++.|++...+|...
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~------------- 313 (449)
T TIGR01316 247 ANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARV------------- 313 (449)
T ss_pred HHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCH-------------
Confidence 1111 0111235789999999999999999999999999999998732111110
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--C---
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--H--- 329 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~--- 329 (443)
...+.+.+.+|+++.+ +.++.. +
T Consensus 314 --------------------------------------------------~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v 343 (449)
T TIGR01316 314 --------------------------------------------------EEIAHAEEEGVKFHFLCQPVEIIGDEEGNV 343 (449)
T ss_pred --------------------------------------------------HHHHHHHhCCCEEEeccCcEEEEEcCCCeE
Confidence 0011111223333322 222211 0
Q ss_pred -cEEE--------------------cCCcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEE
Q 013435 330 -AAEF--------------------IDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAV 388 (443)
Q Consensus 330 -~v~~--------------------~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifai 388 (443)
++.+ .+..++++|.||+|+|+.|++ .++...++..+++|++.+| ++++|+.|+|||+
T Consensus 344 ~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~-~~l~~~gl~~~~~G~i~vd-~~~~Ts~~~VfA~ 421 (449)
T TIGR01316 344 RAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP-IMAETTRLKTSERGTIVVD-EDQRTSIPGVFAG 421 (449)
T ss_pred EEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc-hhhhccCcccCCCCeEEeC-CCCccCCCCEEEe
Confidence 1111 112368999999999999997 6666667777778999999 6788999999999
Q ss_pred eeccCC---cccchHHHHHHHHHHHHhh
Q 013435 389 GFNKRG---LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 389 Gd~~~~---~~~a~~~a~~~a~~i~~~l 413 (443)
||+..+ +..|+.+|+.+|.+|..+|
T Consensus 422 GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 422 GDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 999854 3478999999999998764
No 38
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.97 E-value=4.8e-31 Score=261.93 Aligned_cols=289 Identities=19% Similarity=0.259 Sum_probs=194.0
Q ss_pred CeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 36 GPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
+|+|||||++|+++|..|++.+ .+|+|||+++.++ |... .++.... ..+....++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------------~~~~~~~----~~~~~~~~~~~~ 61 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------------GLPYFVG----GFFDDPNTMIAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------------CCceEec----cccCCHHHhhcC
Confidence 6999999999999999999985 5999999988653 1100 0010000 011223344444
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSS 193 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~ 193 (443)
..+.+.+.++++++++.|++|+.++ ..+.+... ..++...+.||+||+||| ++|..|.+||.+. ..+++...
T Consensus 62 ~~~~~~~~gv~~~~~~~V~~id~~~--~~v~~~~~--~~~~~~~~~yd~lviAtG--~~~~~~~i~g~~~--~~v~~~~~ 133 (444)
T PRK09564 62 TPEEFIKSGIDVKTEHEVVKVDAKN--KTITVKNL--KTGSIFNDTYDKLMIATG--ARPIIPPIKNINL--ENVYTLKS 133 (444)
T ss_pred CHHHHHHCCCeEEecCEEEEEECCC--CEEEEEEC--CCCCEEEecCCEEEECCC--CCCCCCCCCCcCC--CCEEEECC
Confidence 4555667788888899999998766 55444331 111223344999999999 6788888888653 12233322
Q ss_pred CCCCC-------CCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHH
Q 013435 194 YKTGE-------LFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQ 266 (443)
Q Consensus 194 ~~~~~-------~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (443)
+.+.. ...+++|+|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|... .....+.
T Consensus 134 ~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~----------------~~~~~~~ 196 (444)
T PRK09564 134 MEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDSF----------------DKEITDV 196 (444)
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchhc----------------CHHHHHH
Confidence 21111 1346899999999999999999999999999998877 3333110 1111111
Q ss_pred HHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc---EEEcCCcEEcc
Q 013435 267 FLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA---AEFIDGSIENY 341 (443)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~---v~~~~g~~~~~ 341 (443)
+ .+.+++.+++++.+ +.++..++ ....++.++++
T Consensus 197 l-----------------------------------------~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~ 235 (444)
T PRK09564 197 M-----------------------------------------EEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEA 235 (444)
T ss_pred H-----------------------------------------HHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEc
Confidence 1 22333445666655 55554432 12235567999
Q ss_pred cEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------------cccchHHHHHHHHH
Q 013435 342 DAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------------LLGASIDARRISED 408 (443)
Q Consensus 342 D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------------~~~a~~~a~~~a~~ 408 (443)
|.||+|+|+.|++ .++.+.++..+++|++.+| ++++++.++|||+|||+.. ...|..||+.+|++
T Consensus 236 d~vi~a~G~~p~~-~~l~~~gl~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~n 313 (444)
T PRK09564 236 DVVIVATGVKPNT-EFLEDTGLKTLKNGAIIVD-EYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGEN 313 (444)
T ss_pred CEEEECcCCCcCH-HHHHhcCccccCCCCEEEC-CCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHH
Confidence 9999999999997 5677777776678999999 6778899999999999742 12577899999999
Q ss_pred HHHh
Q 013435 409 IEHQ 412 (443)
Q Consensus 409 i~~~ 412 (443)
|.+.
T Consensus 314 i~g~ 317 (444)
T PRK09564 314 LAGR 317 (444)
T ss_pred hcCC
Confidence 9864
No 39
>PRK12831 putative oxidoreductase; Provisional
Probab=99.97 E-value=5.6e-31 Score=260.25 Aligned_cols=297 Identities=19% Similarity=0.219 Sum_probs=189.4
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
.....+||+||||||+|+++|..|++.|++|+|+|+.+.+||.+.. .++.+. .+.++
T Consensus 136 ~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~~--------l~~~~ 192 (464)
T PRK12831 136 EEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY---------------GIPEFR--------LPKET 192 (464)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee---------------cCCCcc--------CCccH
Confidence 3457789999999999999999999999999999998888886532 111111 12234
Q ss_pred HHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEe
Q 013435 110 FLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIF 189 (443)
Q Consensus 110 ~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~ 189 (443)
+..+..++++++++++++++.|. .. ++..+. ...+.||.||+|||++ .|+.+++||.+. .+ ++
T Consensus 193 ~~~~~~~~~~~~gv~i~~~~~v~--------~~--v~~~~~----~~~~~~d~viiAtGa~-~~~~l~ipG~~~-~g-V~ 255 (464)
T PRK12831 193 VVKKEIENIKKLGVKIETNVVVG--------KT--VTIDEL----LEEEGFDAVFIGSGAG-LPKFMGIPGENL-NG-VF 255 (464)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEC--------Cc--CCHHHH----HhccCCCEEEEeCCCC-CCCCCCCCCcCC-cC-cE
Confidence 66666677778899988887551 11 222211 0346799999999962 577788888653 11 11
Q ss_pred ecCCC-------------CCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhh
Q 013435 190 HSSSY-------------KTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 190 ~~~~~-------------~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
...++ .+.....+++|+|||+|++|+|+|..+.+.|.+||+++|++...+|....
T Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~------------ 323 (464)
T PRK12831 256 SANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVE------------ 323 (464)
T ss_pred EHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHH------------
Confidence 11111 11223468999999999999999999999999999999987433332210
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh---cCCCeE---EecC-CcEEeCC
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI---RSGNIK---VCRA-IKRLTHH 329 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~---v~~~-v~~~~~~ 329 (443)
+ .+.+ .+.|+.. ........+ .++++. +..- ....+.+
T Consensus 324 -----e-~~~a------------~~eGV~i-----------------~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~ 368 (464)
T PRK12831 324 -----E-VHHA------------KEEGVIF-----------------DLLTNPVEILGDENGWVKGMKCIKMELGEPDAS 368 (464)
T ss_pred -----H-HHHH------------HHcCCEE-----------------EecccceEEEecCCCeEEEEEEEEEEecCcCCC
Confidence 0 0000 0001100 000000000 011111 1000 0000111
Q ss_pred c---EEEcCC--cEEcccEEEEccCCCCCCCCCccC-cCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchH
Q 013435 330 A---AEFIDG--SIENYDAIILATGYKSNVPYWLKD-TEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASI 400 (443)
Q Consensus 330 ~---v~~~~g--~~~~~D~vi~atG~~~~~~~~~~~-~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~ 400 (443)
| -...+| .++++|.||+|+|+.|++ .++.+ .++..+++|++.+|...++|+.|+|||+||+..+ +..|+.
T Consensus 369 Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~ 447 (464)
T PRK12831 369 GRRRPVEIEGSEFVLEVDTVIMSLGTSPNP-LISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMG 447 (464)
T ss_pred CCccceecCCceEEEECCEEEECCCCCCCh-hhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHH
Confidence 1 011123 268999999999999998 56555 4777777899999944489999999999999864 347889
Q ss_pred HHHHHHHHHHHhhH
Q 013435 401 DARRISEDIEHQWN 414 (443)
Q Consensus 401 ~a~~~a~~i~~~l~ 414 (443)
+|+.+|.+|..+|.
T Consensus 448 ~G~~AA~~I~~~L~ 461 (464)
T PRK12831 448 AGKKAAKAIDEYLS 461 (464)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998874
No 40
>PRK07846 mycothione reductase; Reviewed
Probab=99.97 E-value=1.2e-30 Score=257.68 Aligned_cols=297 Identities=15% Similarity=0.149 Sum_probs=188.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCcccc-C---CCCCCCCCCCCCCCHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQFCQ-L---PLMPFPSNFPTYPTKQ 108 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 108 (443)
.||++|||+||+|..+|.. ..|.+|+|+|++ .+||++-+ .+.|+..+........ . ..+..... ..-....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHH
Confidence 3899999999999998875 469999999986 47776544 4555443221111110 0 00000000 0012344
Q ss_pred HHHHHHHHHH-------------HHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 109 QFLTYLETYT-------------NHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 109 ~~~~~l~~~~-------------~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
++.++..... +..++++..+. ...+ ++ .. |++.++ ..++||+||+||| ++|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~--~~--V~v~~g-----~~~~~d~lViATG--s~p~~ 142 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--GP--KT--LRTGDG-----EEITADQVVIAAG--SRPVI 142 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--cC--CE--EEECCC-----CEEEeCEEEEcCC--CCCCC
Confidence 4444433222 22334433332 1112 11 33 555543 4799999999999 78888
Q ss_pred CCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhh
Q 013435 176 PYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCL 255 (443)
Q Consensus 176 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~ 255 (443)
|++||... ..+++.+........+++++|||+|.+|+|+|..|++.|.+||++.|++ .++|..+.
T Consensus 143 p~i~g~~~---~~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~----------- 207 (451)
T PRK07846 143 PPVIADSG---VRYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDD----------- 207 (451)
T ss_pred CCCCCcCC---ccEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCH-----------
Confidence 98888543 1233332222222347899999999999999999999999999999988 33332211
Q ss_pred hhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC--c-
Q 013435 256 LKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH--A- 330 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~--~- 330 (443)
...+.+ .+.+ +.+++++.+ ++++..+ +
T Consensus 208 ------~~~~~l-----------------------------------------~~l~-~~~v~i~~~~~v~~i~~~~~~v 239 (451)
T PRK07846 208 ------DISERF-----------------------------------------TELA-SKRWDVRLGRNVVGVSQDGSGV 239 (451)
T ss_pred ------HHHHHH-----------------------------------------HHHH-hcCeEEEeCCEEEEEEEcCCEE
Confidence 111111 1111 223666554 5555432 2
Q ss_pred -EEEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---ccchHHHHHH
Q 013435 331 -AEFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---LGASIDARRI 405 (443)
Q Consensus 331 -v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~~a~~~a~~~ 405 (443)
+.+.+|+++++|.||+|+|++|+++.+ +...++..+++|++.+| ++++|+.|+|||+|||+... ..|..||+.+
T Consensus 240 ~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd-~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~ 318 (451)
T PRK07846 240 TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVD-EYQRTSAEGVFALGDVSSPYQLKHVANHEARVV 318 (451)
T ss_pred EEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeEC-CCcccCCCCEEEEeecCCCccChhHHHHHHHHH
Confidence 455678899999999999999998433 23457777788999999 77889999999999998642 2577899999
Q ss_pred HHHHHHh
Q 013435 406 SEDIEHQ 412 (443)
Q Consensus 406 a~~i~~~ 412 (443)
|++|...
T Consensus 319 a~ni~~~ 325 (451)
T PRK07846 319 QHNLLHP 325 (451)
T ss_pred HHHHcCC
Confidence 9999854
No 41
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.97 E-value=8.9e-31 Score=273.27 Aligned_cols=285 Identities=18% Similarity=0.207 Sum_probs=201.9
Q ss_pred CCeEEECCCHHHHHHHHHHHHc----CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEK----GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~----g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
.+|+|||+|++|+.+|..|.+. +++|+||++++.++ |....+.. .+.. ...+++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~~--------------~~~~-~~~~~l 61 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLSS--------------YFSH-HTAEEL 61 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcchH--------------hHcC-CCHHHc
Confidence 3799999999999999999865 47999999998653 22111110 0000 123344
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
.....++.++.+++++.++.|+.++... . .|.+.++ ..+.||+||+||| +.|..|++||.+...-..+.
T Consensus 62 ~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~--~V~~~~G-----~~i~yD~LVIATG--s~p~~p~ipG~~~~~v~~~r 130 (847)
T PRK14989 62 SLVREGFYEKHGIKVLVGERAITINRQE--K--VIHSSAG-----RTVFYDKLIMATG--SYPWIPPIKGSETQDCFVYR 130 (847)
T ss_pred cCCCHHHHHhCCCEEEcCCEEEEEeCCC--c--EEEECCC-----cEEECCEEEECCC--CCcCCCCCCCCCCCCeEEEC
Confidence 4444456667899999999999998754 3 3666654 6799999999999 78888899987642111121
Q ss_pred cCCCCC---CCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHH
Q 013435 191 SSSYKT---GELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQF 267 (443)
Q Consensus 191 ~~~~~~---~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (443)
+.+... .....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++|... .....
T Consensus 131 t~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~l----------------d~~~~--- 190 (847)
T PRK14989 131 TIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQL----------------DQMGG--- 190 (847)
T ss_pred CHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhc----------------CHHHH---
Confidence 211111 112356899999999999999999999999999999887 3433211 11111
Q ss_pred HHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC------cEEEcCCcEE
Q 013435 268 LLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH------AAEFIDGSIE 339 (443)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~------~v~~~~g~~~ 339 (443)
..+.+.+.+.+|+++.+ ++++..+ .+.+.+|+++
T Consensus 191 --------------------------------------~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i 232 (847)
T PRK14989 191 --------------------------------------EQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSEL 232 (847)
T ss_pred --------------------------------------HHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEE
Confidence 11123344557777766 6666432 3677899999
Q ss_pred cccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------cccchHHHHHHHHHHHHh
Q 013435 340 NYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 340 ~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------~~~a~~~a~~~a~~i~~~ 412 (443)
++|.||+|+|++|++ .++...++..+++|+|.|| ++++|+.|+|||+|||+.. +..+..+|+.+|++|.+.
T Consensus 233 ~~D~Vv~A~G~rPn~-~L~~~~Gl~~~~~G~I~VD-~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~ 310 (847)
T PRK14989 233 EVDFIVFSTGIRPQD-KLATQCGLAVAPRGGIVIN-DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGS 310 (847)
T ss_pred EcCEEEECCCcccCc-hHHhhcCccCCCCCcEEEC-CCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCC
Confidence 999999999999998 5777778877788999999 7888999999999999843 124567899999998865
No 42
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=3.4e-30 Score=254.86 Aligned_cols=292 Identities=16% Similarity=0.161 Sum_probs=188.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC-CCccccc-CCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANC-IASLWQL-KTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~-~gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
.|||+||||||+|+++|..|++.|.+|+|+|+.+. +||++.+ .+.|...+...... . .+...+.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~----~----------~~~~~~~ 68 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK----N----------LSFEQVM 68 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc----C----------CCHHHHH
Confidence 58999999999999999999999999999999864 6876432 22332221111000 0 0112221
Q ss_pred H-----------HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCC
Q 013435 112 T-----------YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEG 180 (443)
Q Consensus 112 ~-----------~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g 180 (443)
. ...+...+.+++++.++ +..+ ++ .. |....+ ++...++||+||+||| +.|..|.+||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~--~~--v~v~~~--~~~~~~~~d~vViATG--s~~~~p~i~G 137 (438)
T PRK07251 69 ATKNTVTSRLRGKNYAMLAGSGVDLYDAE-AHFV--SN--KV--IEVQAG--DEKIELTAETIVINTG--AVSNVLPIPG 137 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cC--CE--EEEeeC--CCcEEEEcCEEEEeCC--CCCCCCCCCC
Confidence 1 12233444566554443 2212 11 33 333321 1225799999999999 6788888998
Q ss_pred CCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhch
Q 013435 181 MDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFP 260 (443)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~ 260 (443)
.....+ ++.+.........+++|+|||+|.+|+|+|..+++.|.+|+++.|++ .++|....
T Consensus 138 ~~~~~~--v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~---------------- 198 (438)
T PRK07251 138 LADSKH--VYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEP---------------- 198 (438)
T ss_pred cCCCCc--EEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCH----------------
Confidence 754321 22222222223357899999999999999999999999999999988 44443211
Q ss_pred hHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC--cE-EEcC
Q 013435 261 VRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH--AA-EFID 335 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~--~v-~~~~ 335 (443)
...+ ...+.+++.+++++.+ ++++..+ .+ ...+
T Consensus 199 -~~~~-----------------------------------------~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~ 236 (438)
T PRK07251 199 -SVAA-----------------------------------------LAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTE 236 (438)
T ss_pred -HHHH-----------------------------------------HHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEEC
Confidence 0000 0112233456666655 5565532 23 2346
Q ss_pred CcEEcccEEEEccCCCCCCCCCc-cCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---ccchHHHHHHHHHHHH
Q 013435 336 GSIENYDAIILATGYKSNVPYWL-KDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---LGASIDARRISEDIEH 411 (443)
Q Consensus 336 g~~~~~D~vi~atG~~~~~~~~~-~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~~a~~~a~~~a~~i~~ 411 (443)
++++++|.||+|+|++|++..+. ...++..+++|++.+| ++++++.++|||+|||+... ..|..+++.++.++.+
T Consensus 237 g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd-~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 237 DETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVD-DYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTG 315 (438)
T ss_pred CeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 77899999999999999984332 2336655678999999 67889999999999998752 3566788888887765
Q ss_pred h
Q 013435 412 Q 412 (443)
Q Consensus 412 ~ 412 (443)
.
T Consensus 316 ~ 316 (438)
T PRK07251 316 D 316 (438)
T ss_pred C
Confidence 3
No 43
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.97 E-value=2.3e-30 Score=257.22 Aligned_cols=328 Identities=15% Similarity=0.123 Sum_probs=199.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC--------CCCccccc-CCCCceeeecCCcccc----CCCCCCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN--------CIASLWQL-KTYDRLRLHLPKQFCQ----LPLMPFPSN 100 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~--------~~gg~w~~-~~~~~~~~~~~~~~~~----~~~~~~~~~ 100 (443)
.||++|||+||+|+.+|..+++.|.+|+++|+.. .+||+|-+ .+.|+..+........ ...+.....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4899999999999999999999999999999731 47887654 5566443221111100 000000000
Q ss_pred CCCCCCHHHHHHHH-----------HHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 101 FPTYPTKQQFLTYL-----------ETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 101 ~~~~~~~~~~~~~l-----------~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.........+.++. ....+..++++..+. ..-++ ...+.|+..++ +...++||+||+|||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~-a~f~~----~~~v~v~~~~g---~~~~~~~d~lVIATG- 152 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAY-AEFVD----KHRIKATNKKG---KEKIYSAERFLIATG- 152 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEcC----CCEEEEeccCC---CceEEEeCEEEEecC-
Confidence 00011222222222 223344455543332 11111 13433433222 225799999999999
Q ss_pred CCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCcc
Q 013435 170 NAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTF 249 (443)
Q Consensus 170 ~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~ 249 (443)
++|..|++||.+.+ .+.+.+.. .....+++++|||+|.+|+|+|..|++.|.+||++.|. .++|..+.
T Consensus 153 -s~p~~p~ipG~~~~---~~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d~----- 220 (484)
T TIGR01438 153 -ERPRYPGIPGAKEL---CITSDDLF-SLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILLRGFDQ----- 220 (484)
T ss_pred -CCCCCCCCCCccce---eecHHHhh-cccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec--ccccccCH-----
Confidence 78888999987542 12221111 11234578999999999999999999999999999874 34443321
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe
Q 013435 250 GLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT 327 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~ 327 (443)
...+ ...+.+++.+|+++.+ +.++.
T Consensus 221 ------------~~~~-----------------------------------------~l~~~L~~~gV~i~~~~~v~~v~ 247 (484)
T TIGR01438 221 ------------DCAN-----------------------------------------KVGEHMEEHGVKFKRQFVPIKVE 247 (484)
T ss_pred ------------HHHH-----------------------------------------HHHHHHHHcCCEEEeCceEEEEE
Confidence 1111 1123344556776665 34443
Q ss_pred C--Cc--EEEcCC---cEEcccEEEEccCCCCCCCCC-ccCcCcCccC-CCCcCCCCCCCCcCCCceEEEeeccCC----
Q 013435 328 H--HA--AEFIDG---SIENYDAIILATGYKSNVPYW-LKDTEMFSEK-DGFPRMEFPNGWKGAHGLYAVGFNKRG---- 394 (443)
Q Consensus 328 ~--~~--v~~~~g---~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~-~G~i~~~~~~~~~~~~~ifaiGd~~~~---- 394 (443)
. ++ +.+.++ +++++|.||+|+|++||+..+ +...++..++ +|.|.+| ++++|+.|+|||+|||+..
T Consensus 248 ~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd-~~~~Ts~p~IyA~GDv~~~~~~l 326 (484)
T TIGR01438 248 QIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPAD-EEEQTNVPYIYAVGDILEDKQEL 326 (484)
T ss_pred EcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecC-CCcccCCCCEEEEEEecCCCccc
Confidence 2 22 445555 379999999999999998443 2344776654 5899999 7888999999999998742
Q ss_pred cccchHHHHHHHHHHHHhhHHHHHhHhhhhccccCCCCCccc
Q 013435 395 LLGASIDARRISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLE 436 (443)
Q Consensus 395 ~~~a~~~a~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 436 (443)
...|..+|+.+|++|...-.........+...+..|+...+.
T Consensus 327 ~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vG 368 (484)
T TIGR01438 327 TPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACG 368 (484)
T ss_pred hHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeec
Confidence 226778999999999853221112222344445556554444
No 44
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=7.8e-30 Score=253.40 Aligned_cols=305 Identities=16% Similarity=0.128 Sum_probs=185.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCccc-cCCC---CCCCCCCCCCCCHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQFC-QLPL---MPFPSNFPTYPTKQ 108 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~ 108 (443)
.|||+|||+||+|+++|..+++.|.+|+|+|+...+||++.+ .+.|+..+......+ .+.. ..+--....-....
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 489999999999999999999999999999987778997644 344443322111111 0000 00000000001122
Q ss_pred HHHH-----------HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCC
Q 013435 109 QFLT-----------YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPY 177 (443)
Q Consensus 109 ~~~~-----------~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~ 177 (443)
++.+ ......++.++++..+. . .+. . ...+.|...++ +..+++||+|||||| ++|. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~--~-~~~v~v~~~~g---~~~~~~~d~lVIATG--s~p~--~ 150 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLD--G-VGKVVVKAEDG---SETQLEAKDIVIATG--SEPT--P 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEc--c-CCEEEEEcCCC---ceEEEEeCEEEEeCC--CCCC--C
Confidence 2221 12222333345444332 1 221 1 14455554432 225799999999999 4553 3
Q ss_pred CCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhh
Q 013435 178 IEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLK 257 (443)
Q Consensus 178 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~ 257 (443)
+||.+. .+..+.++.........+++++|||+|.+|+|+|..+.+.|.+||++.+.+ .++|..+.
T Consensus 151 ipg~~~-~~~~~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~------------- 215 (466)
T PRK06115 151 LPGVTI-DNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDT------------- 215 (466)
T ss_pred CCCCCC-CCCeEECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCH-------------
Confidence 555432 122122222111122357899999999999999999999999999999887 44443210
Q ss_pred hchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--CcEE-
Q 013435 258 WFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--HAAE- 332 (443)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~~v~- 332 (443)
.... .+.+.+.+.+|+++.+ +.++.. +++.
T Consensus 216 ----~~~~-----------------------------------------~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v 250 (466)
T PRK06115 216 ----ETAK-----------------------------------------TLQKALTKQGMKFKLGSKVTGATAGADGVSL 250 (466)
T ss_pred ----HHHH-----------------------------------------HHHHHHHhcCCEEEECcEEEEEEEcCCeEEE
Confidence 0111 1123333456776665 556643 2332
Q ss_pred -Ec---C--CcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---ccchHHH
Q 013435 333 -FI---D--GSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---LGASIDA 402 (443)
Q Consensus 333 -~~---~--g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~~a~~~a 402 (443)
+. + ++++++|.||+|+|++|++..+ +...++..+++| +.+| ++++|+.|+|||+|||+... ..|..||
T Consensus 251 ~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd-~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g 328 (466)
T PRK06115 251 TLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLAN-DHHRTSVPGVWVIGDVTSGPMLAHKAEDEA 328 (466)
T ss_pred EEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEEC-CCeecCCCCEEEeeecCCCcccHHHHHHHH
Confidence 22 2 3579999999999999998434 233366665667 4567 67889999999999998642 2677899
Q ss_pred HHHHHHHHHh
Q 013435 403 RRISEDIEHQ 412 (443)
Q Consensus 403 ~~~a~~i~~~ 412 (443)
+.+|++|++.
T Consensus 329 ~~aa~~i~~~ 338 (466)
T PRK06115 329 VACIERIAGK 338 (466)
T ss_pred HHHHHHHcCC
Confidence 9999999864
No 45
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.97 E-value=3.6e-30 Score=256.74 Aligned_cols=304 Identities=14% Similarity=0.153 Sum_probs=194.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCcc----ccCCCCCCCCCCCCCCCHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQF----CQLPLMPFPSNFPTYPTKQ 108 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 108 (443)
.|||+|||||++|+++|..|++.|.+++|+|+ +.+||+|.+ .++|+..+...... .+...+..... ....+..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 78 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWE 78 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHH
Confidence 48999999999999999999999999999999 778998764 34443221111110 00000000000 0011222
Q ss_pred HHHHH-----------HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCC
Q 013435 109 QFLTY-----------LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPY 177 (443)
Q Consensus 109 ~~~~~-----------l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~ 177 (443)
.+.++ ..+..++.++++..+. +..++ . ..+.+...++ ..+++||+||+||| +.|+.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~--~--~~~~v~~~~g----~~~~~~d~lVlAtG--~~p~~~~ 147 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGE-AKFLD--P--GTVLVTGENG----EETLTAKNIIIATG--SRPRSLP 147 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--CEEEEecCCC----cEEEEeCEEEEcCC--CCCCCCC
Confidence 22222 2234444566654443 22222 2 4555554332 15799999999999 6777666
Q ss_pred CC-CCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhh
Q 013435 178 IE-GMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 178 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
+| +.. +..++++.........+++++|||+|.+|+|+|..|.+.|.+||++.|.+ .++|...
T Consensus 148 ~~~~~~---~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~------------- 210 (461)
T TIGR01350 148 GPFDFD---GEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGED------------- 210 (461)
T ss_pred CCCCCC---CceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCC-------------
Confidence 65 222 22233433322223356899999999999999999999999999999988 3434221
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe--CCcE-
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT--HHAA- 331 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~--~~~v- 331 (443)
....+ ...+.+++.+++++.+ +.++. .+++
T Consensus 211 ----~~~~~-----------------------------------------~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~ 245 (461)
T TIGR01350 211 ----AEVSK-----------------------------------------VVAKALKKKGVKILTNTKVTAVEKNDDQVV 245 (461)
T ss_pred ----HHHHH-----------------------------------------HHHHHHHHcCCEEEeCCEEEEEEEeCCEEE
Confidence 01111 1123333456676665 55554 2333
Q ss_pred -EEcCC--cEEcccEEEEccCCCCCCCC-CccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHH
Q 013435 332 -EFIDG--SIENYDAIILATGYKSNVPY-WLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARR 404 (443)
Q Consensus 332 -~~~~g--~~~~~D~vi~atG~~~~~~~-~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~ 404 (443)
.+.+| +++++|.||+|+|+.|++.. ++...++..+++|++.+| ++.+++.|+||++|||+.. ...|..+|+.
T Consensus 246 v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd-~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~ 324 (461)
T TIGR01350 246 YENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVD-EYMRTNVPGIYAIGDVIGGPMLAHVASHEGIV 324 (461)
T ss_pred EEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeC-CCcccCCCCEEEeeecCCCcccHHHHHHHHHH
Confidence 33456 47999999999999999844 345557777788999999 7788899999999999854 3367889999
Q ss_pred HHHHHHHhh
Q 013435 405 ISEDIEHQW 413 (443)
Q Consensus 405 ~a~~i~~~l 413 (443)
+|++|.+.-
T Consensus 325 aa~~i~~~~ 333 (461)
T TIGR01350 325 AAENIAGKE 333 (461)
T ss_pred HHHHHcCCC
Confidence 999998653
No 46
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=2.3e-30 Score=258.04 Aligned_cols=306 Identities=16% Similarity=0.176 Sum_probs=193.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEec------CCCCCcccccC-CCCceeee-cCCccccC----C--CCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILER------ANCIASLWQLK-TYDRLRLH-LPKQFCQL----P--LMPFP 98 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~------~~~~gg~w~~~-~~~~~~~~-~~~~~~~~----~--~~~~~ 98 (443)
..||++||||||+|+++|..+++.|.+++|+|+ ...+||+|.+. +.|...+. .......+ . .....
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 358999999999999999999999999999998 35688887653 33331111 10000000 0 01100
Q ss_pred CCCCCCCCHHHHH-----------HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEcc
Q 013435 99 SNFPTYPTKQQFL-----------TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVAT 167 (443)
Q Consensus 99 ~~~~~~~~~~~~~-----------~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAt 167 (443)
.. -.....+. .......+..++++..+. +..++... ..++|.+... . + .+++||+||+||
T Consensus 83 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~--~~~~v~v~~~-~-~-~~~~~d~lViAT 153 (475)
T PRK06327 83 -GV--KIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFVGKTD--AGYEIKVTGE-D-E-TVITAKHVIIAT 153 (475)
T ss_pred -CC--ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCC--CCCEEEEecC-C-C-eEEEeCEEEEeC
Confidence 00 01122222 223334445566665443 44555443 3455665421 0 1 589999999999
Q ss_pred CCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCC
Q 013435 168 GENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRS 247 (443)
Q Consensus 168 G~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~ 247 (443)
| +.|+.| |+.. +.+..++.++........+++|+|||+|.+|+|+|..|.+.|.+||++.+++ .++|..+.
T Consensus 154 G--s~p~~~--p~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~--- 224 (475)
T PRK06327 154 G--SEPRHL--PGVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFLAAADE--- 224 (475)
T ss_pred C--CCCCCC--CCCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccCCcCCH---
Confidence 9 565433 2222 1122234433322233457899999999999999999999999999999988 34342210
Q ss_pred ccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcE
Q 013435 248 TFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKR 325 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~ 325 (443)
...+ ...+.+.+.+|+++.+ +.+
T Consensus 225 --------------~~~~-----------------------------------------~~~~~l~~~gi~i~~~~~v~~ 249 (475)
T PRK06327 225 --------------QVAK-----------------------------------------EAAKAFTKQGLDIHLGVKIGE 249 (475)
T ss_pred --------------HHHH-----------------------------------------HHHHHHHHcCcEEEeCcEEEE
Confidence 0111 1122333456676665 555
Q ss_pred EeCC--c--EEEcC--C--cEEcccEEEEccCCCCCCCCCc-cCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC--
Q 013435 326 LTHH--A--AEFID--G--SIENYDAIILATGYKSNVPYWL-KDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-- 394 (443)
Q Consensus 326 ~~~~--~--v~~~~--g--~~~~~D~vi~atG~~~~~~~~~-~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-- 394 (443)
+..+ + +.+.+ | +++++|.|++|+|++|++..+. ...++..+++|++.+| ++++|+.|+|||+|||+..
T Consensus 250 i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd-~~~~Ts~~~VyA~GD~~~~~~ 328 (475)
T PRK06327 250 IKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVD-DHCRTNVPNVYAIGDVVRGPM 328 (475)
T ss_pred EEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeEC-CCCccCCCCEEEEEeccCCcc
Confidence 5432 2 33333 3 4689999999999999985443 3347777788999999 6788999999999999864
Q ss_pred -cccchHHHHHHHHHHHHh
Q 013435 395 -LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 395 -~~~a~~~a~~~a~~i~~~ 412 (443)
...|..||+.+|++|.+.
T Consensus 329 ~~~~A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 329 LAHKAEEEGVAVAERIAGQ 347 (475)
T ss_pred hHHHHHHHHHHHHHHHcCC
Confidence 336888999999999864
No 47
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=1.2e-29 Score=253.03 Aligned_cols=309 Identities=18% Similarity=0.201 Sum_probs=192.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCcc-c--------cCCCCCCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQF-C--------QLPLMPFPSNFP 102 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~ 102 (443)
..||++||||||+|+++|..|++.|.+|+|+|+. .+||+|.+ .+.|+..+...... . .+......-++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 4689999999999999999999999999999996 68998865 33343221111100 0 010000000000
Q ss_pred CCC-CHHHHHHHH----HHHHHHcCCccccceeEEEEEEe---CCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCc
Q 013435 103 TYP-TKQQFLTYL----ETYTNHFGLDPVFNTTVVNAEYD---HLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 103 ~~~-~~~~~~~~l----~~~~~~~~~~v~~~~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
... ..+++.+++ ...+++.+++++.+. +..++.. ++.+.+.|.+.++ +...++||+||+||| ++|.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g---~~~~~~~d~lViATG--s~p~ 155 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETG---ENEMIIPENLLIATG--SRPV 155 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCC---ceEEEEcCEEEEeCC--CCCC
Confidence 000 112222222 334555677776653 5555543 1113666766443 225799999999999 5664
Q ss_pred cCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhh
Q 013435 175 VPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMC 254 (443)
Q Consensus 175 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~ 254 (443)
.| |+... .+..+.++.........+++++|||+|.+|+|+|..|++.|.+||++.|.+ .++|..+.
T Consensus 156 ~~--p~~~~-~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~~~~---------- 221 (472)
T PRK05976 156 EL--PGLPF-DGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPTEDA---------- 221 (472)
T ss_pred CC--CCCCC-CCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCcCCH----------
Confidence 33 33221 122122222211222346899999999999999999999999999999988 44453311
Q ss_pred hhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe---CC
Q 013435 255 LLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT---HH 329 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~---~~ 329 (443)
.+.+ .+.+.+++.+|+++.+ +.++. .+
T Consensus 222 -------~~~~-----------------------------------------~l~~~l~~~gI~i~~~~~v~~i~~~~~~ 253 (472)
T PRK05976 222 -------ELSK-----------------------------------------EVARLLKKLGVRVVTGAKVLGLTLKKDG 253 (472)
T ss_pred -------HHHH-----------------------------------------HHHHHHHhcCCEEEeCcEEEEEEEecCC
Confidence 1111 1123344556777666 55654 33
Q ss_pred cE---EEcCCc--EEcccEEEEccCCCCCCCCCc-cCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchH
Q 013435 330 AA---EFIDGS--IENYDAIILATGYKSNVPYWL-KDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASI 400 (443)
Q Consensus 330 ~v---~~~~g~--~~~~D~vi~atG~~~~~~~~~-~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~ 400 (443)
++ .+.+|+ ++++|.||+|+|.+|++..+. ...++.. ++|++.+| ++.+++.++|||+|||... ...|..
T Consensus 254 ~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd-~~l~ts~~~IyAiGD~~~~~~~~~~A~~ 331 (472)
T PRK05976 254 GVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQID-DFCQTKERHIYAIGDVIGEPQLAHVAMA 331 (472)
T ss_pred CEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEEC-CCcccCCCCEEEeeecCCCcccHHHHHH
Confidence 33 234563 689999999999999984432 2335543 56889999 7788999999999999854 336788
Q ss_pred HHHHHHHHHHHh
Q 013435 401 DARRISEDIEHQ 412 (443)
Q Consensus 401 ~a~~~a~~i~~~ 412 (443)
+|+.+|.+|.+.
T Consensus 332 ~g~~aa~~i~g~ 343 (472)
T PRK05976 332 EGEMAAEHIAGK 343 (472)
T ss_pred HHHHHHHHHcCC
Confidence 999999998753
No 48
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=7.7e-30 Score=264.29 Aligned_cols=289 Identities=20% Similarity=0.285 Sum_probs=188.5
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...++|+||||||+|+++|..|++.|++|+|+|+.+.+||.++.. + +.+....++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------I---------P~~Rlp~evL 592 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------I---------PQFRIPAELI 592 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------c---------ccccccHHHH
Confidence 567899999999999999999999999999999999888865431 1 1222234455
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
....++....|++++.++.+ .++. .+. ....||+||||||++ .+..+.++|.+. .++..
T Consensus 593 ~~die~l~~~GVe~~~gt~V-di~l-----------e~L-----~~~gYDaVILATGA~-~~~~l~IpG~~~---gV~sa 651 (1019)
T PRK09853 593 QHDIEFVKAHGVKFEFGCSP-DLTV-----------EQL-----KNEGYDYVVVAIGAD-KNGGLKLEGGNQ---NVIKA 651 (1019)
T ss_pred HHHHHHHHHcCCEEEeCcee-EEEh-----------hhh-----eeccCCEEEECcCCC-CCCCCCCCCccC---Cceeh
Confidence 55556667789888888765 2221 111 345689999999974 344556777542 12222
Q ss_pred CCCC------CCCCCCCCeEEEEccCCCHHHHHHHHhhc-C-CccEEEEecCCccccccccCCCccchhhhhhhhchhHH
Q 013435 192 SSYK------TGELFRDKNVLVVGCGNSGMEVSLDLCNY-N-ARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRL 263 (443)
Q Consensus 192 ~~~~------~~~~~~~~~v~ViG~G~~~~e~a~~l~~~-g-~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 263 (443)
.++. ......+++|+|||||++|+|+|..+.+. | .+|+++.|++...+|... +++
T Consensus 652 ldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~-----------------eEl 714 (1019)
T PRK09853 652 LPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWR-----------------EEY 714 (1019)
T ss_pred HHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccH-----------------HHH
Confidence 2111 11223589999999999999999999887 4 489999998854444321 011
Q ss_pred HHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhc-CCCeEEecC-CcEEeCCc----EEEcCCc
Q 013435 264 VDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIR-SGNIKVCRA-IKRLTHHA----AEFIDGS 337 (443)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~-v~~~~~~~----v~~~~g~ 337 (443)
.+.. ..++.. ........+. ++++.+..- +...+.+| +...++.
T Consensus 715 e~Al-------------eeGVe~-----------------~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~ 764 (1019)
T PRK09853 715 EEAL-------------EDGVEF-----------------KELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETV 764 (1019)
T ss_pred HHHH-------------HcCCEE-----------------EeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeE
Confidence 0000 011110 0000000111 222222110 11111111 2233456
Q ss_pred EEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHHHHHHHHHhhH
Q 013435 338 IENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARRISEDIEHQWN 414 (443)
Q Consensus 338 ~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~~a~~i~~~l~ 414 (443)
++++|.||+|+|..|++ .++...++..+++|++.++ +..+++.|+|||+||++.+ +..|..+|+.+|++|++...
T Consensus 765 ~I~aD~VIvAIG~~Pnt-elle~~GL~ld~~G~I~VD-etlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 765 TLEADTVITAIGEQVDT-ELLKANGIPLDKKGWPVVD-ANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred EEEeCEEEECCCCcCCh-hHHHhcCccccCCCCEEeC-CCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 79999999999999998 6676667777788999998 6778899999999999754 44788999999999998664
No 49
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=8.5e-30 Score=268.30 Aligned_cols=293 Identities=19% Similarity=0.222 Sum_probs=191.9
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...++|+||||||||+++|..|++.|++|+|+|+.+.+||.... ..+.|....++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y------------------------GIP~~rlp~~vi 359 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY------------------------GIPEFRLPNQLI 359 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc------------------------cCCCCcChHHHH
Confidence 34789999999999999999999999999999999999886543 122334456777
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
+...+..+..|++++.++.+- . .++..+. ....||+||+|||++ .|+.+++||.+. .+ ++..
T Consensus 360 ~~~i~~l~~~Gv~f~~n~~vG--------~--dit~~~l-----~~~~yDAV~LAtGA~-~pr~l~IpG~dl-~G-V~~a 421 (944)
T PRK12779 360 DDVVEKIKLLGGRFVKNFVVG--------K--TATLEDL-----KAAGFWKIFVGTGAG-LPTFMNVPGEHL-LG-VMSA 421 (944)
T ss_pred HHHHHHHHhhcCeEEEeEEec--------c--EEeHHHh-----ccccCCEEEEeCCCC-CCCcCCCCCCcC-cC-cEEH
Confidence 777777888899888876541 1 1444432 346799999999973 677888888653 22 1111
Q ss_pred CCCC---------------CCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhh
Q 013435 192 SSYK---------------TGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 192 ~~~~---------------~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
.++. ......+++|+|||||++|+|+|..+.+.|++||+++|++...+|...
T Consensus 422 ~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~------------- 488 (944)
T PRK12779 422 NEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARV------------- 488 (944)
T ss_pred HHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccH-------------
Confidence 1110 011236799999999999999999999999999999998743333211
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh-cC-C--CeEE-ecC---CcEEeC
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI-RS-G--NIKV-CRA---IKRLTH 328 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~--~v~v-~~~---v~~~~~ 328 (443)
.+... .. +.|+.. ........+ .+ . .+.- ... ....+.
T Consensus 489 ----~e~~~-a~------------eeGV~~-----------------~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~ 534 (944)
T PRK12779 489 ----EELHH-AL------------EEGINL-----------------AVLRAPREFIGDDHTHFVTHALLDVNELGEPDK 534 (944)
T ss_pred ----HHHHH-HH------------HCCCEE-----------------EeCcceEEEEecCCCCEEEEEEEEEEEeccccC
Confidence 00000 00 001100 000000001 01 1 1110 000 000011
Q ss_pred Cc--EEEcCC--cEEcccEEEEccCCCCCCCCCccC-cCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchH
Q 013435 329 HA--AEFIDG--SIENYDAIILATGYKSNVPYWLKD-TEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASI 400 (443)
Q Consensus 329 ~~--v~~~~g--~~~~~D~vi~atG~~~~~~~~~~~-~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~ 400 (443)
+| ....+| .+++||.||+|+|+.|+. .+... .++..+++|.+.+|...++|+.|+|||+||+..+ +..|+.
T Consensus 535 ~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~-~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~ 613 (944)
T PRK12779 535 SGRRSPKPTGEIERVPVDLVIMALGNTANP-IMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAG 613 (944)
T ss_pred cCceeeecCCceEEEECCEEEEcCCcCCCh-hhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHH
Confidence 11 111123 369999999999999996 33332 3676678899999955688999999999999875 458999
Q ss_pred HHHHHHHHHHHhhH
Q 013435 401 DARRISEDIEHQWN 414 (443)
Q Consensus 401 ~a~~~a~~i~~~l~ 414 (443)
+|+.+|.+|..+|.
T Consensus 614 eGr~AA~~I~~~L~ 627 (944)
T PRK12779 614 DGQAAAKEIVGEIP 627 (944)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999875
No 50
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=2.9e-30 Score=256.26 Aligned_cols=278 Identities=19% Similarity=0.211 Sum_probs=190.4
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
+...++|+||||||+|+++|..|++.|++++|+|+.+.+||.+... + +.+....++
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------i---------p~~~~~~~~ 192 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------I---------PEFRLPKDI 192 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------C---------CCccCCHHH
Confidence 3566899999999999999999999999999999998888754321 1 111123466
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
..+..+++.+.+++++.++.+. .. ++..+ ..+.||+||+|||.+ .+..+.+||.+. .+ +++
T Consensus 193 ~~~~~~~l~~~gv~~~~~~~v~--------~~--v~~~~------~~~~~d~vvlAtGa~-~~~~~~i~G~~~-~g-v~~ 253 (457)
T PRK11749 193 VDREVERLLKLGVEIRTNTEVG--------RD--ITLDE------LRAGYDAVFIGTGAG-LPRFLGIPGENL-GG-VYS 253 (457)
T ss_pred HHHHHHHHHHcCCEEEeCCEEC--------Cc--cCHHH------HHhhCCEEEEccCCC-CCCCCCCCCccC-CC-cEE
Confidence 6667777777888887777551 11 22222 237899999999963 456667787653 11 122
Q ss_pred cCCCC--------CCCCCCCCeEEEEccCCCHHHHHHHHhhcCC-ccEEEEecCCccccccccCCCccchhhhhhhhchh
Q 013435 191 SSSYK--------TGELFRDKNVLVVGCGNSGMEVSLDLCNYNA-RPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPV 261 (443)
Q Consensus 191 ~~~~~--------~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~ 261 (443)
..++. ......+++|+|||+|.+|+|+|..|.+.|. +|+++.|++...+|....
T Consensus 254 ~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~----------------- 316 (457)
T PRK11749 254 AVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE----------------- 316 (457)
T ss_pred HHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----------------
Confidence 11110 0112368999999999999999999999987 899999987433332210
Q ss_pred HHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc-----EEE-
Q 013435 262 RLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA-----AEF- 333 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~-----v~~- 333 (443)
..+.+.+.+|+++.+ +.++..++ +.+
T Consensus 317 ----------------------------------------------~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~ 350 (457)
T PRK11749 317 ----------------------------------------------EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFV 350 (457)
T ss_pred ----------------------------------------------HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEE
Confidence 011122233444333 33332211 222
Q ss_pred ------------------cCCcEEcccEEEEccCCCCCCCCCcc-CcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC
Q 013435 334 ------------------IDGSIENYDAIILATGYKSNVPYWLK-DTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG 394 (443)
Q Consensus 334 ------------------~~g~~~~~D~vi~atG~~~~~~~~~~-~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~ 394 (443)
.+++++++|.||+|+|++|+. .++. ..++..+++|++.+|..+++|+.|+|||+||++.+
T Consensus 351 ~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~-~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~ 429 (457)
T PRK11749 351 RMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP-LILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTG 429 (457)
T ss_pred EEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc-hhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCC
Confidence 123479999999999999996 5544 34676678899999954788999999999999854
Q ss_pred ---cccchHHHHHHHHHHHHhhHH
Q 013435 395 ---LLGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 395 ---~~~a~~~a~~~a~~i~~~l~~ 415 (443)
+..|..+|+.+|.+|..++..
T Consensus 430 ~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 430 AATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Confidence 347889999999999998854
No 51
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.97 E-value=5.8e-30 Score=249.71 Aligned_cols=283 Identities=16% Similarity=0.173 Sum_probs=186.3
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCC--CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGV--PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
.+|+|||||++|+++|..|++.+. +|+|+++++... |....+ +..+.. ....+. ....
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~~l--~~~~~~---~~~~~~--~~~~------ 63 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERPPL--SKSMLL---EDSPQL--QQVL------ 63 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCCCC--CHHHHC---CCCccc--cccC------
Confidence 479999999999999999999876 899999986542 111100 000000 000000 0000
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
-.++..+.+++++.++.|..++... .. |.+.++ ..+.||+||+||| +.|+.+++++... ..++...
T Consensus 64 -~~~~~~~~~i~~~~g~~V~~id~~~--~~--v~~~~g-----~~~~yd~LViATG--s~~~~~p~~~~~~--~~v~~~~ 129 (396)
T PRK09754 64 -PANWWQENNVHLHSGVTIKTLGRDT--RE--LVLTNG-----ESWHWDQLFIATG--AAARPLPLLDALG--ERCFTLR 129 (396)
T ss_pred -CHHHHHHCCCEEEcCCEEEEEECCC--CE--EEECCC-----CEEEcCEEEEccC--CCCCCCCCCCcCC--CCEEecC
Confidence 0123345688988998999998765 33 555554 5799999999999 5665555544321 1122211
Q ss_pred CCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHH
Q 013435 193 SYKT-----GELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQF 267 (443)
Q Consensus 193 ~~~~-----~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (443)
...+ .....+++++|||+|.+|+|+|..|.+.|.+||++.+.+ .+++.. ++....+
T Consensus 130 ~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~----------------~~~~~~~-- 190 (396)
T PRK09754 130 HAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGRN----------------APPPVQR-- 190 (396)
T ss_pred CHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhhh----------------cCHHHHH--
Confidence 1111 111247899999999999999999999999999999887 333321 0111111
Q ss_pred HHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC---cEEEcCCcEEccc
Q 013435 268 LLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH---AAEFIDGSIENYD 342 (443)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~---~v~~~~g~~~~~D 342 (443)
...+.+.+.+|+++.+ ++++..+ .+.+.+|+++++|
T Consensus 191 ---------------------------------------~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD 231 (396)
T PRK09754 191 ---------------------------------------YLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQAD 231 (396)
T ss_pred ---------------------------------------HHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECC
Confidence 1122333456676655 5666542 2567789999999
Q ss_pred EEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC------------cccchHHHHHHHHHHH
Q 013435 343 AIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG------------LLGASIDARRISEDIE 410 (443)
Q Consensus 343 ~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~------------~~~a~~~a~~~a~~i~ 410 (443)
.||+++|..|++ .++...++.. +|.+.+| ++++|+.|+|||+|||+.. +..|..||+.+|++|.
T Consensus 232 ~Vv~a~G~~pn~-~l~~~~gl~~--~~gi~vd-~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~ 307 (396)
T PRK09754 232 VVIYGIGISAND-QLAREANLDT--ANGIVID-EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAML 307 (396)
T ss_pred EEEECCCCChhh-HHHHhcCCCc--CCCEEEC-CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhc
Confidence 999999999997 5666667754 3558898 7788999999999998731 1247789999999998
Q ss_pred Hhh
Q 013435 411 HQW 413 (443)
Q Consensus 411 ~~l 413 (443)
+..
T Consensus 308 g~~ 310 (396)
T PRK09754 308 GLP 310 (396)
T ss_pred CCC
Confidence 653
No 52
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.9e-29 Score=224.42 Aligned_cols=334 Identities=16% Similarity=0.188 Sum_probs=213.8
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCc----cccCCCCCCCCC-CCC
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQ----FCQLPLMPFPSN-FPT 103 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~ 103 (443)
.....||.++||||..|+++|++.+++|.++.++|..-.+||++-+ .+.|...+..... +.+...+.|+.. ...
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 4456999999999999999999999999999999998788887643 4444433322111 111112222221 011
Q ss_pred C------CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeC---CCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCc
Q 013435 104 Y------PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDH---LSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 104 ~------~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~---~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
| ..++++...|....++. ..+..|.-|+-.. +...+.|...++ ....|++++++||+| ++|.
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~----L~k~~V~~i~G~a~f~~~~~v~V~~~d~---~~~~Ytak~iLIAtG--g~p~ 166 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRN----LAKAAVKLIEGRARFVSPGEVEVEVNDG---TKIVYTAKHILIATG--GRPI 166 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhh----ccccceeEEeeeEEEcCCCceEEEecCC---eeEEEecceEEEEeC--CccC
Confidence 1 12233333332222211 1122222222110 114445655553 236799999999999 8999
Q ss_pred cCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhh
Q 013435 175 VPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMC 254 (443)
Q Consensus 175 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~ 254 (443)
+|++||.+. .+.+-.+.+ ....+++++|||+|++|+|+|.-++.+|.+++++.|... +|...+
T Consensus 167 ~PnIpG~E~----gidSDgff~-Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~k-vLR~FD----------- 229 (478)
T KOG0405|consen 167 IPNIPGAEL----GIDSDGFFD-LEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEK-VLRGFD----------- 229 (478)
T ss_pred CCCCCchhh----ccccccccc-hhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecch-hhcchh-----------
Confidence 999999764 133332322 334689999999999999999999999999999999983 222111
Q ss_pred hhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--Cc
Q 013435 255 LLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--HA 330 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~~ 330 (443)
+. +.+..-+.+...+|.++.+ ++++.. ++
T Consensus 230 ------~~-----------------------------------------i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g 262 (478)
T KOG0405|consen 230 ------EM-----------------------------------------ISDLVTEHLEGRGINVHKNSSVTKVIKTDDG 262 (478)
T ss_pred ------HH-----------------------------------------HHHHHHHHhhhcceeecccccceeeeecCCC
Confidence 11 1112223344456777765 444332 22
Q ss_pred ---EEEcCCcEEcccEEEEccCCCCCCCCCccCc-CcCccCCCCcCCCCCCCCcCCCceEEEeeccCCcc---cchHHHH
Q 013435 331 ---AEFIDGSIENYDAIILATGYKSNVPYWLKDT-EMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGLL---GASIDAR 403 (443)
Q Consensus 331 ---v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~-~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~~---~a~~~a~ 403 (443)
+....|....+|.++||+|++|++-.+-.+. ++..++.|-|.+| +|+.|++|+||++||.+.-+. .|...|+
T Consensus 263 ~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD-eYq~Tnvp~I~avGDv~gk~~LTPVAiaagr 341 (478)
T KOG0405|consen 263 LELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD-EYQNTNVPSIWAVGDVTGKINLTPVAIAAGR 341 (478)
T ss_pred ceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe-ccccCCCCceEEeccccCcEecchHHHhhhh
Confidence 3345565567999999999999997776665 8888999999999 999999999999999887533 4666777
Q ss_pred HHHHHHHHhhH-HHHHhHhhhhccccCCCCCcccc
Q 013435 404 RISEDIEHQWN-SEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 404 ~~a~~i~~~l~-~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
..|..+-+... ....+...+...+..|+.-.+.+
T Consensus 342 ~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGL 376 (478)
T KOG0405|consen 342 KLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGL 376 (478)
T ss_pred hHHHHhhcCCCCCccccccCceEEEecCCcccccC
Confidence 77777666432 22334444555577777655543
No 53
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=1.1e-29 Score=265.55 Aligned_cols=281 Identities=18% Similarity=0.177 Sum_probs=195.7
Q ss_pred eEEECCCHHHHHHHHHHHHc---CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 37 PVIVGAGPSGLATAACLTEK---GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 37 vvIIG~G~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
|+|||+|++|+++|.+|.+. +++|+||++++.++ |....+ +. .+.+..+.+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L---------~~-----~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL---------SS-----VLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc---------cH-----HHCCCCCHHHccCC
Confidence 68999999999999999886 46999999988653 111110 00 00111123344333
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSS 193 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~ 193 (443)
..++.++.+++++.++.|+.|+... . .|.+.++ .++.||+||+||| +.|+.|++||.+.. + ++....
T Consensus 60 ~~~~~~~~gv~~~~g~~V~~Id~~~--k--~V~~~~g-----~~~~yD~LVlATG--s~p~~p~ipG~~~~-~-v~~~rt 126 (785)
T TIGR02374 60 SKDWYEKHGITLYTGETVIQIDTDQ--K--QVITDAG-----RTLSYDKLILATG--SYPFILPIPGADKK-G-VYVFRT 126 (785)
T ss_pred CHHHHHHCCCEEEcCCeEEEEECCC--C--EEEECCC-----cEeeCCEEEECCC--CCcCCCCCCCCCCC-C-EEEeCC
Confidence 4455667799999999999998754 3 3666664 6899999999999 68888999996642 1 222111
Q ss_pred CCCC-----CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHH
Q 013435 194 YKTG-----ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFL 268 (443)
Q Consensus 194 ~~~~-----~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (443)
..+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .+++.. +......
T Consensus 127 ~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~----------------ld~~~~~--- 186 (785)
T TIGR02374 127 IEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQ----------------LDQTAGR--- 186 (785)
T ss_pred HHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhh----------------cCHHHHH---
Confidence 1111 11246899999999999999999999999999999887 333321 1111111
Q ss_pred HHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC----cEEEcCCcEEccc
Q 013435 269 LLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH----AAEFIDGSIENYD 342 (443)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~----~v~~~~g~~~~~D 342 (443)
.+.+.+.+.+|+++.+ ++++..+ ++.+.+|+++++|
T Consensus 187 --------------------------------------~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D 228 (785)
T TIGR02374 187 --------------------------------------LLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEAD 228 (785)
T ss_pred --------------------------------------HHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcC
Confidence 1123344556777765 5555432 4778899999999
Q ss_pred EEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------cccchHHHHHHHHHHHHhh
Q 013435 343 AIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 343 ~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------~~~a~~~a~~~a~~i~~~l 413 (443)
.||+|+|++|++ .+..+.++..+ |.+.+| ++++|+.|+|||+|||+.. +..|..||+.+|.+|.+.-
T Consensus 229 ~Vi~a~G~~Pn~-~la~~~gl~~~--ggI~Vd-~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 229 LIVMAAGIRPND-ELAVSAGIKVN--RGIIVN-DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred EEEECCCCCcCc-HHHHhcCCccC--CCEEEC-CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 999999999998 56666677653 668888 6788999999999999742 1235689999999998653
No 54
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.96 E-value=3.7e-29 Score=253.39 Aligned_cols=306 Identities=17% Similarity=0.153 Sum_probs=186.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecC-CCCCccccc-CCCCceeeecCCcc------------ccCCCCCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERA-NCIASLWQL-KTYDRLRLHLPKQF------------CQLPLMPFPS 99 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~-~~~gg~w~~-~~~~~~~~~~~~~~------------~~~~~~~~~~ 99 (443)
.||++|||+|++|+.+|..+++.|.+|+|||+. ..+||++-+ .+.|+..+...... +.+....|+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 689999999999999999999999999999974 368886543 44444322111110 1111000000
Q ss_pred ----------C--CCCCCCHHHHHHHHHHHHHHcC--Cc-------cccceeEEEEEEeCCCCeE----EEEEe-ecCCC
Q 013435 100 ----------N--FPTYPTKQQFLTYLETYTNHFG--LD-------PVFNTTVVNAEYDHLSRLW----RVKTQ-QGLKQ 153 (443)
Q Consensus 100 ----------~--~~~~~~~~~~~~~l~~~~~~~~--~~-------v~~~~~V~~i~~~~~~~~~----~v~~~-~~~~~ 153 (443)
. ...-.....+.++.+...++.. +. +...++.+.+.... ..| +|+.. ++
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~--a~f~~~~~v~v~~~g--- 270 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYER--GHIVDKNTIKSEKSG--- 270 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeE--EEEecCCeEEEccCC---
Confidence 0 0011244555555544333221 11 01111122222221 111 13322 22
Q ss_pred cEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEe
Q 013435 154 EETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVR 233 (443)
Q Consensus 154 ~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r 233 (443)
.++.||+|||||| +.|..|+.++... ..+.+++........+++|+|||+|.+|+|+|..+...|.+||++.+
T Consensus 271 --~~i~ad~lIIATG--S~P~~P~~~~~~~---~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~ 343 (659)
T PTZ00153 271 --KEFKVKNIIIATG--STPNIPDNIEVDQ---KSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEY 343 (659)
T ss_pred --EEEECCEEEEcCC--CCCCCCCCCCCCC---CcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 5799999999999 7787776555432 22333333222333478999999999999999999999999999999
Q ss_pred cCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhh-h
Q 013435 234 DTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAK-I 312 (443)
Q Consensus 234 ~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 312 (443)
.+ .++|..+. .+.+.+ .+. +
T Consensus 344 ~~-~ll~~~d~-----------------eis~~l-----------------------------------------~~~ll 364 (659)
T PTZ00153 344 SP-QLLPLLDA-----------------DVAKYF-----------------------------------------ERVFL 364 (659)
T ss_pred cC-cccccCCH-----------------HHHHHH-----------------------------------------HHHHh
Confidence 88 44443211 111111 111 1
Q ss_pred cCCCeEEecC--CcEEeCCc----EEE--cC---------------CcEEcccEEEEccCCCCCCCCC-ccCcCcCccCC
Q 013435 313 RSGNIKVCRA--IKRLTHHA----AEF--ID---------------GSIENYDAIILATGYKSNVPYW-LKDTEMFSEKD 368 (443)
Q Consensus 313 ~~~~v~v~~~--v~~~~~~~----v~~--~~---------------g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~ 368 (443)
++.+|+++.+ ++++..++ +.+ .+ .+++++|.||+|+|++|++..+ +...++..+ +
T Consensus 365 ~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~ 443 (659)
T PTZ00153 365 KSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-R 443 (659)
T ss_pred hcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCccc-C
Confidence 2345666665 55554321 222 11 1369999999999999998544 234477664 5
Q ss_pred CCcCCCCCCCCcC------CCceEEEeeccCCc---ccchHHHHHHHHHHHHh
Q 013435 369 GFPRMEFPNGWKG------AHGLYAVGFNKRGL---LGASIDARRISEDIEHQ 412 (443)
Q Consensus 369 G~i~~~~~~~~~~------~~~ifaiGd~~~~~---~~a~~~a~~~a~~i~~~ 412 (443)
|+|.|| ++++++ +|+|||+|||+... ..|..||+.+|++|.+.
T Consensus 444 G~I~VD-e~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 444 GFVSVD-EHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CEEeEC-CCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 999999 677775 69999999998642 26778999999999864
No 55
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.96 E-value=3.3e-29 Score=248.70 Aligned_cols=300 Identities=17% Similarity=0.179 Sum_probs=185.5
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccc-cCCCCceeeecCCccc----cCC--CCCCCCCCCCCCCHH
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQ-LKTYDRLRLHLPKQFC----QLP--LMPFPSNFPTYPTKQ 108 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~ 108 (443)
+|+||||||+|+++|..+++.|.+|+|+|+.. +||++- ..+.|+..+....... ... ....... ....+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNG-SISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCC-CCccCHH
Confidence 79999999999999999999999999999975 666543 3444433221110000 000 0110000 0011233
Q ss_pred HHHHHHHH-----------HHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCC
Q 013435 109 QFLTYLET-----------YTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPY 177 (443)
Q Consensus 109 ~~~~~l~~-----------~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~ 177 (443)
.+..+..+ ..++.++++..+. +..++ . ..+.|..+++ ..+++||+|||||| +.|..|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~~--~--~~v~v~~~~~----~~~~~~d~lviATG--s~p~~~p 148 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFET--D--HRVRVEYGDK----EEVVDAEQFIIAAG--SEPTELP 148 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEcc--C--CEEEEeeCCC----cEEEECCEEEEeCC--CCCCCCC
Confidence 33333222 2233344443322 22222 1 4555554321 25799999999999 6676666
Q ss_pred CCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhh
Q 013435 178 IEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLK 257 (443)
Q Consensus 178 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~ 257 (443)
+++... ..+.++.........+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|....
T Consensus 149 ~~~~~~---~~v~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~------------- 211 (458)
T PRK06912 149 FAPFDG---KWIINSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDE------------- 211 (458)
T ss_pred CCCCCC---CeEEcchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccH-------------
Confidence 665432 1122222222223346899999999999999999999999999999987 34443210
Q ss_pred hchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc--EEE
Q 013435 258 WFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA--AEF 333 (443)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~--v~~ 333 (443)
...+ .+.+.+.+.+|+++.+ +.++..++ +.+
T Consensus 212 ----e~~~-----------------------------------------~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~ 246 (458)
T PRK06912 212 ----DIAH-----------------------------------------ILREKLENDGVKIFTGAALKGLNSYKKQALF 246 (458)
T ss_pred ----HHHH-----------------------------------------HHHHHHHHCCCEEEECCEEEEEEEcCCEEEE
Confidence 1111 1123344456777665 55665432 333
Q ss_pred c-CC--cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHHHH
Q 013435 334 I-DG--SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARRIS 406 (443)
Q Consensus 334 ~-~g--~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~~a 406 (443)
. +| +++++|.||+|+|++|++..+ +...++..+++| +.+| ++++|+.|+|||+||+... ...|..+|+.+|
T Consensus 247 ~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd-~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa 324 (458)
T PRK06912 247 EYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVN-EHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAA 324 (458)
T ss_pred EECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeC-CCeecCCCCEEEEeecCCCcccHHHHHHHHHHHH
Confidence 2 34 368999999999999998433 233466665666 8888 7788999999999999864 336788999999
Q ss_pred HHHHHh
Q 013435 407 EDIEHQ 412 (443)
Q Consensus 407 ~~i~~~ 412 (443)
.++.+.
T Consensus 325 ~~~~g~ 330 (458)
T PRK06912 325 LHASGE 330 (458)
T ss_pred HHHcCC
Confidence 998753
No 56
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.96 E-value=4e-29 Score=247.18 Aligned_cols=297 Identities=14% Similarity=0.152 Sum_probs=182.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCccc----cCCCCCCCCCCCCCCCHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQFC----QLPLMPFPSNFPTYPTKQ 108 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 108 (443)
.||++|||+||+|..+|.. ..|.+|+++|++ .+||++-+ .+.|+..+....... ....+..... .......
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHH
Confidence 5899999999999998654 479999999985 57876544 445543322111110 0000000000 0011233
Q ss_pred HHHHHHHH-HH--------------HHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 109 QFLTYLET-YT--------------NHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 109 ~~~~~l~~-~~--------------~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
.+.++... .. ++.++++..++.+.. +.++|.+.++ .+++||+||+||| +.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~-------~~~~V~~~~g-----~~~~~d~lIiATG--s~p 143 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV-------GPRTLRTGDG-----EEITGDQIVIAAG--SRP 143 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe-------cCCEEEECCC-----cEEEeCEEEEEEC--CCC
Confidence 33333221 11 113444444432211 2233665543 5799999999999 677
Q ss_pred ccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhh
Q 013435 174 VVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSM 253 (443)
Q Consensus 174 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~ 253 (443)
..|+..+.. +..+.+.+........+++++|||+|.+|+|+|..|...|.+||++.+.+. ++|..+
T Consensus 144 ~~p~~~~~~---~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~-ll~~~d---------- 209 (452)
T TIGR03452 144 YIPPAIADS---GVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK-LLRHLD---------- 209 (452)
T ss_pred CCCCCCCCC---CCEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc-cccccC----------
Confidence 777543321 111222211111122468999999999999999999999999999998873 333221
Q ss_pred hhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--C
Q 013435 254 CLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--H 329 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~ 329 (443)
......+ .+.+ +.+++++.+ +.++.. +
T Consensus 210 -------~~~~~~l-----------------------------------------~~~~-~~gI~i~~~~~V~~i~~~~~ 240 (452)
T TIGR03452 210 -------EDISDRF-----------------------------------------TEIA-KKKWDIRLGRNVTAVEQDGD 240 (452)
T ss_pred -------HHHHHHH-----------------------------------------HHHH-hcCCEEEeCCEEEEEEEcCC
Confidence 1111111 0111 123555544 455542 2
Q ss_pred c--EEEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---ccchHHHH
Q 013435 330 A--AEFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---LGASIDAR 403 (443)
Q Consensus 330 ~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~~a~~~a~ 403 (443)
+ +.+.+|+++++|.|++|+|++|++..+ +...++..+++|++.+| ++++|+.|+|||+|||+... ..|..||+
T Consensus 241 ~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~ 319 (452)
T TIGR03452 241 GVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVD-EYGRTSARGVWALGDVSSPYQLKHVANAEAR 319 (452)
T ss_pred eEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeC-CCcccCCCCEEEeecccCcccChhHHHHHHH
Confidence 2 445678889999999999999998433 23347777788999999 67789999999999998642 25778999
Q ss_pred HHHHHHHHh
Q 013435 404 RISEDIEHQ 412 (443)
Q Consensus 404 ~~a~~i~~~ 412 (443)
.+|++|.+.
T Consensus 320 ~~a~ni~~~ 328 (452)
T TIGR03452 320 VVKHNLLHP 328 (452)
T ss_pred HHHHHhcCC
Confidence 999999864
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=3.7e-29 Score=261.89 Aligned_cols=293 Identities=18% Similarity=0.241 Sum_probs=186.5
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
+...++|+||||||+|+++|..|++.|++|+|+|+.+.+||.+.. .++ .+....++
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip---------~~rlp~~~ 483 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY---------------GIP---------EFRLPKKI 483 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---------------cCC---------CCCCCHHH
Confidence 356779999999999999999999999999999998888876533 111 11122345
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
.+...+.+.+++++++.++.+. .. ++..+. ....||+||+|||+ +.|+.|.+||.+. .+ +++
T Consensus 484 ~~~~~~~l~~~gv~~~~~~~v~--------~~--v~~~~l-----~~~~ydavvlAtGa-~~~~~l~ipG~~~-~g-V~~ 545 (752)
T PRK12778 484 VDVEIENLKKLGVKFETDVIVG--------KT--ITIEEL-----EEEGFKGIFIASGA-GLPNFMNIPGENS-NG-VMS 545 (752)
T ss_pred HHHHHHHHHHCCCEEECCCEEC--------Cc--CCHHHH-----hhcCCCEEEEeCCC-CCCCCCCCCCCCC-CC-cEE
Confidence 5555566777898888776541 11 333221 35679999999996 2577778888653 11 111
Q ss_pred cCCC-------------CCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCc-cEEEEecCCccccccccCCCccchhhhhh
Q 013435 191 SSSY-------------KTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR-PSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 191 ~~~~-------------~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~-Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
..++ .......+++|+|||||++|+|+|..+.+.|.+ ||+++|++...+|....
T Consensus 546 ~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~------------ 613 (752)
T PRK12778 546 SNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLE------------ 613 (752)
T ss_pred HHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH------------
Confidence 1111 111224579999999999999999999999987 99999987433332210
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh---cCCCeE-EecC-Cc--EEeCC
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI---RSGNIK-VCRA-IK--RLTHH 329 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~-v~~~-v~--~~~~~ 329 (443)
+. ..+ .+.++.. ........+ .++.+. +... +. ..+.+
T Consensus 614 -----e~-~~~------------~~~GV~i-----------------~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~ 658 (752)
T PRK12778 614 -----EV-KHA------------KEEGIEF-----------------LTLHNPIEYLADEKGWVKQVVLQKMELGEPDAS 658 (752)
T ss_pred -----HH-HHH------------HHcCCEE-----------------EecCcceEEEECCCCEEEEEEEEEEEecCcCCC
Confidence 00 000 0001100 000000000 011111 0000 00 00001
Q ss_pred c----EEEc-CCcEEcccEEEEccCCCCCCCCCccCc-CcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchH
Q 013435 330 A----AEFI-DGSIENYDAIILATGYKSNVPYWLKDT-EMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASI 400 (443)
Q Consensus 330 ~----v~~~-~g~~~~~D~vi~atG~~~~~~~~~~~~-~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~ 400 (443)
| +... +..++++|.||+|+|+.|+. .++... ++..+++|++.+| +..+|+.|+|||+||+..+ +..|+.
T Consensus 659 G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~gVfA~GD~~~g~~~vv~Av~ 736 (752)
T PRK12778 659 GRRRPVAIPGSTFTVDVDLVIVSVGVSPNP-LVPSSIPGLELNRKGTIVVD-EEMQSSIPGIYAGGDIVRGGATVILAMG 736 (752)
T ss_pred CCCCceecCCCeEEEECCEEEECcCCCCCc-cccccccCceECCCCCEEeC-CCCCCCCCCEEEeCCccCCcHHHHHHHH
Confidence 1 1111 12368999999999999997 455443 6777778999999 5668999999999999864 447899
Q ss_pred HHHHHHHHHHHhhH
Q 013435 401 DARRISEDIEHQWN 414 (443)
Q Consensus 401 ~a~~~a~~i~~~l~ 414 (443)
+|+.+|.+|.++|.
T Consensus 737 ~G~~AA~~I~~~L~ 750 (752)
T PRK12778 737 DGKRAAAAIDEYLS 750 (752)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998874
No 58
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.96 E-value=4.8e-29 Score=241.27 Aligned_cols=280 Identities=20% Similarity=0.241 Sum_probs=193.5
Q ss_pred CeEEECCCHHHHHHHHHHHHc---CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 36 GPVIVGAGPSGLATAACLTEK---GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
+|+|||||++|+.+|.+|.++ +.+|+|||+++.+- |... ++. ...+.....++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~----------~~~-----~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM----------LPG-----MIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch----------hhH-----HHheeCCHHHhcc
Confidence 489999999999999999754 57999999887431 1000 000 0011123455555
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
.+.+++++.+++++.+ +|++++... .. |.+.++ .+++||+||+||| +.+..|.+||..+. .+...
T Consensus 59 ~~~~~~~~~gv~~~~~-~v~~id~~~--~~--V~~~~g-----~~~~yD~LviAtG--~~~~~~~i~g~~~~---~~~~~ 123 (364)
T TIGR03169 59 DLRRLARQAGARFVIA-EATGIDPDR--RK--VLLANR-----PPLSYDVLSLDVG--STTPLSGVEGAADL---AVPVK 123 (364)
T ss_pred cHHHHHHhcCCEEEEE-EEEEEeccc--CE--EEECCC-----CcccccEEEEccC--CCCCCCCCCccccc---ccccC
Confidence 6667777788887654 799998866 43 666664 5799999999999 78888888884431 11100
Q ss_pred C----------CCCCC--CCCCCeEEEEccCCCHHHHHHHHhhc----C--CccEEEEecCCccccccccCCCccchhhh
Q 013435 193 S----------YKTGE--LFRDKNVLVVGCGNSGMEVSLDLCNY----N--ARPSLVVRDTVHVLPQEMIGRSTFGLSMC 254 (443)
Q Consensus 193 ~----------~~~~~--~~~~~~v~ViG~G~~~~e~a~~l~~~----g--~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~ 254 (443)
. ..... ....++|+|||+|.+|+|+|..|.+. | .+|+++ +.+ .+++...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~----------- 190 (364)
T TIGR03169 124 PIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFP----------- 190 (364)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCC-----------
Confidence 0 00000 12357999999999999999999853 3 479988 444 2322210
Q ss_pred hhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCcEE
Q 013435 255 LLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHAAE 332 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~v~ 332 (443)
... .....+.+++.+|+++.+ ++++..+.+.
T Consensus 191 ------~~~-----------------------------------------~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~ 223 (364)
T TIGR03169 191 ------AKV-----------------------------------------RRLVLRLLARRGIEVHEGAPVTRGPDGALI 223 (364)
T ss_pred ------HHH-----------------------------------------HHHHHHHHHHCCCEEEeCCeeEEEcCCeEE
Confidence 011 111234455667888876 7777777788
Q ss_pred EcCCcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCc-CCCceEEEeeccCC--------cccchHHHH
Q 013435 333 FIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWK-GAHGLYAVGFNKRG--------LLGASIDAR 403 (443)
Q Consensus 333 ~~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~-~~~~ifaiGd~~~~--------~~~a~~~a~ 403 (443)
+.+|+++++|.||+|+|.+|+. ++...++..+++|++.+| ++.++ +.++|||+|||+.. ...|..||+
T Consensus 224 ~~~g~~i~~D~vi~a~G~~p~~--~l~~~gl~~~~~g~i~vd-~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~ 300 (364)
T TIGR03169 224 LADGRTLPADAILWATGARAPP--WLAESGLPLDEDGFLRVD-PTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAP 300 (364)
T ss_pred eCCCCEEecCEEEEccCCChhh--HHHHcCCCcCCCCeEEEC-CccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHH
Confidence 9899999999999999999984 445556666778999999 55555 89999999999742 125788999
Q ss_pred HHHHHHHHhhHH
Q 013435 404 RISEDIEHQWNS 415 (443)
Q Consensus 404 ~~a~~i~~~l~~ 415 (443)
.+|++|...+..
T Consensus 301 ~~a~ni~~~l~g 312 (364)
T TIGR03169 301 ILAANLRASLRG 312 (364)
T ss_pred HHHHHHHHHhcC
Confidence 999999988754
No 59
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=6.8e-28 Score=231.46 Aligned_cols=286 Identities=18% Similarity=0.179 Sum_probs=182.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+|+|||+|++|+++|..|++.|++++++|+.+.+||.+... ++. ...+.+.+...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~---------------~~~--------~~~~~~~~~~~ 74 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG---------------IPE--------FRIPIERVREG 74 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec---------------Ccc--------cccCHHHHHHH
Confidence 4589999999999999999999999999999998887654221 000 00123444444
Q ss_pred HHHHHHHcCCccccceeEEEEEE--eCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEY--DHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~--~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
..++. +.++.++.++.|..++. ......+....... +...++||+||+|||.+ .+..|.+||.+.. .++.+
T Consensus 75 ~~~l~-~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~lviAtGs~-~~~~~~ipg~~~~--~v~~~ 147 (352)
T PRK12770 75 VKELE-EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSL---EELVKKYDAVLIATGTW-KSRKLGIPGEDLP--GVYSA 147 (352)
T ss_pred HHHHH-hCCeEEecCcEEeeccccccccccccccccCCH---HHHHhhCCEEEEEeCCC-CCCcCCCCCcccc--CceeH
Confidence 55444 44888888877755432 11112222221111 00247999999999952 4677788876531 11111
Q ss_pred -------CCC-------CCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCc-cEEEEecCCccccccccCCCccchhhhhh
Q 013435 192 -------SSY-------KTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR-PSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 192 -------~~~-------~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~-Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
... .......+++++|||+|.+|+|+|..|...|.+ |+++.|++....+.. .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~----------~--- 214 (352)
T PRK12770 148 LEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAG----------K--- 214 (352)
T ss_pred HHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCC----------H---
Confidence 000 011123478999999999999999999988887 999988762110000 0
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc----
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA---- 330 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~---- 330 (443)
.. .+.+.+.+|+++.+ +.++..++
T Consensus 215 -----~~---------------------------------------------~~~l~~~gi~i~~~~~v~~i~~~~~~~~ 244 (352)
T PRK12770 215 -----YE---------------------------------------------IERLIARGVEFLELVTPVRIIGEGRVEG 244 (352)
T ss_pred -----HH---------------------------------------------HHHHHHcCCEEeeccCceeeecCCcEeE
Confidence 00 01111222333222 22221110
Q ss_pred EE--------------------EcCCcEEcccEEEEccCCCCCCCCCccC-cCcCccCCCCcCCCCCCCCcCCCceEEEe
Q 013435 331 AE--------------------FIDGSIENYDAIILATGYKSNVPYWLKD-TEMFSEKDGFPRMEFPNGWKGAHGLYAVG 389 (443)
Q Consensus 331 v~--------------------~~~g~~~~~D~vi~atG~~~~~~~~~~~-~~l~~~~~G~i~~~~~~~~~~~~~ifaiG 389 (443)
+. ..+++++++|.||+++|++|+. .+..+ .++..+++|++.+| .+.+++.++||++|
T Consensus 245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~-~l~~~~~g~~~~~~g~i~vd-~~~~t~~~~vyaiG 322 (352)
T PRK12770 245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP-PFAKECLGIELNRKGEIVVD-EKHMTSREGVFAAG 322 (352)
T ss_pred EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc-hhhhcccCceecCCCcEeeC-CCcccCCCCEEEEc
Confidence 11 1233579999999999999997 56555 57766778999999 66778999999999
Q ss_pred eccCC---cccchHHHHHHHHHHHHhhH
Q 013435 390 FNKRG---LLGASIDARRISEDIEHQWN 414 (443)
Q Consensus 390 d~~~~---~~~a~~~a~~~a~~i~~~l~ 414 (443)
||+.. +..|..+|+.+|.+|.+.|.
T Consensus 323 D~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 323 DVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 99863 34788999999999998873
No 60
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.96 E-value=2e-28 Score=255.19 Aligned_cols=289 Identities=17% Similarity=0.244 Sum_probs=181.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...++|+||||||||+++|..|++.|++|+|+|+.+.+||..... + +.+....+..
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------I---------P~~rlp~e~l 590 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------I---------PEFRISAESI 590 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------c---------cccCCCHHHH
Confidence 456899999999999999999999999999999999888754321 1 1111123444
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
....++....|++++++... . ++.... ....||+||+|||++ .+..+.++|... .++..
T Consensus 591 ~~~ie~l~~~GVe~~~g~~~---------d---~~ve~l-----~~~gYDaVIIATGA~-~~~~l~I~G~~~---~v~~a 649 (1012)
T TIGR03315 591 QKDIELVKFHGVEFKYGCSP---------D---LTVAEL-----KNQGYKYVILAIGAW-KHGPLRLEGGGE---RVLKS 649 (1012)
T ss_pred HHHHHHHHhcCcEEEEeccc---------c---eEhhhh-----hcccccEEEECCCCC-CCCCCCcCCCCc---ceeeH
Confidence 54555666678777665311 0 111111 345689999999973 344456676432 11211
Q ss_pred CCC----CC--CCCCCCCeEEEEccCCCHHHHHHHHhhc-C-CccEEEEecCCccccccccCCCccchhhhhhhhchhHH
Q 013435 192 SSY----KT--GELFRDKNVLVVGCGNSGMEVSLDLCNY-N-ARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRL 263 (443)
Q Consensus 192 ~~~----~~--~~~~~~~~v~ViG~G~~~~e~a~~l~~~-g-~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 263 (443)
.++ .+ .....+++|+|||||++|+|+|..+.+. | .+|++++|++...+|... +++
T Consensus 650 vefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~-----------------eEl 712 (1012)
T TIGR03315 650 LEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASR-----------------EEL 712 (1012)
T ss_pred HHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCH-----------------HHH
Confidence 111 11 1224589999999999999999999886 6 479999998754444321 011
Q ss_pred HHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC-CcEEeCCc--EEEcCCc--E
Q 013435 264 VDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA-IKRLTHHA--AEFIDGS--I 338 (443)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~~~~~~--v~~~~g~--~ 338 (443)
.+.. ..++.. ........+.++++.+..- +.+.+.++ ..+.+|+ +
T Consensus 713 ~~al-------------eeGVe~-----------------~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~ 762 (1012)
T TIGR03315 713 EEAL-------------EDGVDF-----------------KELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVD 762 (1012)
T ss_pred HHHH-------------HcCCEE-----------------EeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEE
Confidence 0000 011110 0000001111222322110 11111111 1222343 6
Q ss_pred EcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHHHHHHHHHhh
Q 013435 339 ENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 339 ~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~~a~~i~~~l 413 (443)
+++|.||+|+|+.|++ .++...++..+++|++.+|....+|+.++|||+||+..+ +..|+.+|+.+|.+|.+..
T Consensus 763 I~aD~VIvAiG~~Pnt-~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 763 LPADTVIAAVGEQVDT-DLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred EEeCEEEEecCCcCCh-HHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999998 667667787778899999954578899999999999753 4478999999999998653
No 61
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=3.5e-28 Score=249.66 Aligned_cols=293 Identities=17% Similarity=0.258 Sum_probs=187.3
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...++|+||||||+|+++|..|++.|++|+|+|+.+.+||.++.. + +.+....++.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~ 246 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------I---------PRFRLPESVI 246 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------C---------CCCCCCHHHH
Confidence 356799999999999999999999999999999999898876431 1 1122234555
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
+...+.+.+.|+++++++.+ .++ ++..+ ....||.||+|||.+ .+..+.+||.+. .+ ++..
T Consensus 247 ~~~~~~l~~~Gv~i~~~~~v-~~d---------v~~~~------~~~~~DaVilAtGa~-~~~~~~ipG~~~-~g-v~~~ 307 (652)
T PRK12814 247 DADIAPLRAMGAEFRFNTVF-GRD---------ITLEE------LQKEFDAVLLAVGAQ-KASKMGIPGEEL-PG-VISG 307 (652)
T ss_pred HHHHHHHHHcCCEEEeCCcc-cCc---------cCHHH------HHhhcCEEEEEcCCC-CCCCCCCCCcCc-CC-cEeH
Confidence 55666677788888777643 111 22221 123589999999963 234567777543 12 1111
Q ss_pred CCC-----CCCCCCCCCeEEEEccCCCHHHHHHHHhhcCC-ccEEEEecCCccccccccCCCccchhhhhhhhchhHHHH
Q 013435 192 SSY-----KTGELFRDKNVLVVGCGNSGMEVSLDLCNYNA-RPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVD 265 (443)
Q Consensus 192 ~~~-----~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (443)
..+ .......+++|+|||+|++|+|+|..+.+.|. +||+++|++...+|.... ++.+
T Consensus 308 ~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~-----------------ei~~ 370 (652)
T PRK12814 308 IDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRA-----------------EIEE 370 (652)
T ss_pred HHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----------------HHHH
Confidence 111 11223468999999999999999999999985 699999987444443210 0000
Q ss_pred HHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh--cCCCeEEecC-Cc--EEeCCc---EEEcCCc
Q 013435 266 QFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI--RSGNIKVCRA-IK--RLTHHA---AEFIDGS 337 (443)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~-v~--~~~~~~---v~~~~g~ 337 (443)
.. ..++..- .......+ .++++.+..- +. +.+.+| ....+|+
T Consensus 371 a~-------------~eGV~i~-----------------~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~ 420 (652)
T PRK12814 371 AL-------------AEGVSLR-----------------ELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGS 420 (652)
T ss_pred HH-------------HcCCcEE-----------------eccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCc
Confidence 00 0111100 00000000 0111111000 00 000111 1111232
Q ss_pred --EEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHHHHHHHHHh
Q 013435 338 --IENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 338 --~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~~a~~i~~~ 412 (443)
++++|.||+|+|+.|++ .++...++..+.+|++.+|..+++|+.++|||+||+..+ +..|..+|+.+|.+|..+
T Consensus 421 ~~~i~~D~VI~AiG~~p~~-~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~ 499 (652)
T PRK12814 421 EFTLQADTVISAIGQQVDP-PIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLF 499 (652)
T ss_pred eEEEECCEEEECCCCcCCc-ccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999998 677666777777899999966789999999999999854 347889999999999999
Q ss_pred hHH
Q 013435 413 WNS 415 (443)
Q Consensus 413 l~~ 415 (443)
|..
T Consensus 500 L~g 502 (652)
T PRK12814 500 LNG 502 (652)
T ss_pred HcC
Confidence 864
No 62
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.96 E-value=9.4e-29 Score=219.34 Aligned_cols=189 Identities=36% Similarity=0.626 Sum_probs=136.0
Q ss_pred EEECCCHHHHHHHHHHHHcCCC-EEEEecCCCCCcccccCCCCceeeecCCcc---ccCCCC---CCC-----CCCCCCC
Q 013435 38 VIVGAGPSGLATAACLTEKGVP-SLILERANCIASLWQLKTYDRLRLHLPKQF---CQLPLM---PFP-----SNFPTYP 105 (443)
Q Consensus 38 vIIG~G~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~---~~~~~~---~~~-----~~~~~~~ 105 (443)
+||||||+|+++|.+|.++|.+ ++|+|+++.+||.|... ++...+..+..+ +.++.. .+. .....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 6999999999999999999998 99999999999999851 222222222211 111111 100 0123467
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCC-CCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEG-MDGF 184 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g-~~~~ 184 (443)
+.+++.+|++++++++++.++++++|++++..+ +.|.|++.++ .+++|++||+|||..+.|..|.++| ..
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~w~v~~~~~-----~~~~a~~VVlAtG~~~~p~~p~~~g~~~-- 150 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG--DGWTVTTRDG-----RTIRADRVVLATGHYSHPRIPDIPGSAF-- 150 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEET--TTEEEEETTS------EEEEEEEEE---SSCSB---S-TTGGC--
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEec--cEEEEEEEec-----ceeeeeeEEEeeeccCCCCccccccccc--
Confidence 899999999999999999999999999999998 5699999875 6899999999999988999999998 22
Q ss_pred cccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCc
Q 013435 185 RGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVH 237 (443)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~ 237 (443)
...+|+.++.+...+++++|+|||+|.||+|+|..|++.|.+|+++.|++.|
T Consensus 151 -~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 151 -RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp -SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred -cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 2678998888888889999999999999999999999999999999999854
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.96 E-value=5.7e-28 Score=256.76 Aligned_cols=295 Identities=18% Similarity=0.200 Sum_probs=186.4
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
.+.++|+||||||+|+++|..|++.|++|+|+|+.+.+||.... ..+.+....++.
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~------------------------gip~~rl~~e~~ 483 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY------------------------GIPSFRLPRDII 483 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec------------------------cCCccCCCHHHH
Confidence 35689999999999999999999999999999999888774322 112223345667
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
+...+.+.++|+++++++.+ + .. ++..+. .....||+||||||++ .|+.+++||.+. .+ +++.
T Consensus 484 ~~~~~~l~~~Gv~~~~~~~v-g-------~~--~~~~~l----~~~~~yDaViIATGa~-~pr~l~IpG~~l-~g-V~~a 546 (1006)
T PRK12775 484 DREVQRLVDIGVKIETNKVI-G-------KT--FTVPQL----MNDKGFDAVFLGVGAG-APTFLGIPGEFA-GQ-VYSA 546 (1006)
T ss_pred HHHHHHHHHCCCEEEeCCcc-C-------Cc--cCHHHH----hhccCCCEEEEecCCC-CCCCCCCCCcCC-CC-cEEH
Confidence 77777778889998887643 1 11 111110 0134689999999963 577788888543 12 2222
Q ss_pred CC--------------CCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCc-cEEEEecCCccccccccCCCccchhhhhh
Q 013435 192 SS--------------YKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR-PSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 192 ~~--------------~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~-Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
.+ ..+.....+++|+|||||++|+|+|..+.+.|.+ |+++.|+....+|....
T Consensus 547 ~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~------------ 614 (1006)
T PRK12775 547 NEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIE------------ 614 (1006)
T ss_pred HHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHH------------
Confidence 11 1122234689999999999999999999999864 88998876433332210
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh---cCCCeE---EecC-CcEEeCC
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI---RSGNIK---VCRA-IKRLTHH 329 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~---v~~~-v~~~~~~ 329 (443)
++ +.+ .+.|+.. ........+ .++++. +..- ....+.+
T Consensus 615 -----e~-~~a------------~eeGI~~-----------------~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~ 659 (1006)
T PRK12775 615 -----EI-RHA------------KEEGIDF-----------------FFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEK 659 (1006)
T ss_pred -----HH-HHH------------HhCCCEE-----------------EecCCcEEEEeCCCCeEEEEEEEEEEecccCCC
Confidence 00 000 0001100 000000000 012211 1000 0000111
Q ss_pred c--EEEcCC--cEEcccEEEEccCCCCCCCCCccCc-CcCccCCCCcCCCC----CCCCcCCCceEEEeeccCC---ccc
Q 013435 330 A--AEFIDG--SIENYDAIILATGYKSNVPYWLKDT-EMFSEKDGFPRMEF----PNGWKGAHGLYAVGFNKRG---LLG 397 (443)
Q Consensus 330 ~--v~~~~g--~~~~~D~vi~atG~~~~~~~~~~~~-~l~~~~~G~i~~~~----~~~~~~~~~ifaiGd~~~~---~~~ 397 (443)
| .....| .++++|.||+|+|+.|++ .++... ++..+.+|.+.+|. ..++|+.|+|||+||+..+ +..
T Consensus 660 Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~ 738 (1006)
T PRK12775 660 GRRKPMPTGEFKDLECDTVIYALGTKANP-IITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVIL 738 (1006)
T ss_pred CCccccCCCceEEEEcCEEEECCCcCCCh-hhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHH
Confidence 1 000123 369999999999999997 454443 66667789998884 3678999999999999765 447
Q ss_pred chHHHHHHHHHHHHhhHH
Q 013435 398 ASIDARRISEDIEHQWNS 415 (443)
Q Consensus 398 a~~~a~~~a~~i~~~l~~ 415 (443)
|+.+|+.+|.+|..+|..
T Consensus 739 Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 739 AMGAGRRAARSIATYLRL 756 (1006)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 889999999999999865
No 64
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=5.9e-28 Score=249.07 Aligned_cols=293 Identities=19% Similarity=0.226 Sum_probs=184.4
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...++|+||||||+|+++|..|++.|++|+|+|+.+.+||.+... + +.+....++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------i---------p~~~l~~~~~ 380 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------I---------PAFKLDKSLL 380 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------C---------CCccCCHHHH
Confidence 456799999999999999999999999999999999888865431 1 1111224555
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
....+.++++|++++.++.|.. . ++..+ ....||.||+|||++ .+..+.++|.+. .+ ++..
T Consensus 381 ~~~~~~~~~~Gv~~~~~~~v~~--------~--i~~~~------~~~~~DavilAtGa~-~~~~l~i~g~~~-~G-v~~a 441 (654)
T PRK12769 381 ARRREIFSAMGIEFELNCEVGK--------D--ISLES------LLEDYDAVFVGVGTY-RSMKAGLPNEDA-PG-VYDA 441 (654)
T ss_pred HHHHHHHHHCCeEEECCCEeCC--------c--CCHHH------HHhcCCEEEEeCCCC-CCCCCCCCCCCC-CC-eEEh
Confidence 5556667788988888876520 0 11111 124699999999973 334456666543 12 1100
Q ss_pred --------------CCCCC--CCCCCCCeEEEEccCCCHHHHHHHHhhcCC-ccEEEEecCCccccccccCCCccchhhh
Q 013435 192 --------------SSYKT--GELFRDKNVLVVGCGNSGMEVSLDLCNYNA-RPSLVVRDTVHVLPQEMIGRSTFGLSMC 254 (443)
Q Consensus 192 --------------~~~~~--~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~Vt~i~r~~~~~lp~~~~~~~~~~~~~~ 254 (443)
....+ .....+++|+|||+|++|+|+|..+.+.|. +||+++|++...+|....
T Consensus 442 ~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~---------- 511 (654)
T PRK12769 442 LPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK---------- 511 (654)
T ss_pred HHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH----------
Confidence 00101 112467899999999999999999999985 699999987433443210
Q ss_pred hhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh---cCCCeE---EecC-CcEEe
Q 013435 255 LLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI---RSGNIK---VCRA-IKRLT 327 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~---v~~~-v~~~~ 327 (443)
. .+.+ .+.|+.. ........+ .++++. +... ..+.+
T Consensus 512 -------e-~~~~------------~~~Gv~~-----------------~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~ 554 (654)
T PRK12769 512 -------E-VKNA------------REEGANF-----------------EFNVQPVALELNEQGHVCGIRFLRTRLGEPD 554 (654)
T ss_pred -------H-HHHH------------HHcCCeE-----------------EeccCcEEEEECCCCeEEEEEEEEEEecCcC
Confidence 0 0000 0011100 000000000 012211 1000 00001
Q ss_pred CCc---EEEcCC--cEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCC---CCCcCCCceEEEeeccCC---cc
Q 013435 328 HHA---AEFIDG--SIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFP---NGWKGAHGLYAVGFNKRG---LL 396 (443)
Q Consensus 328 ~~~---v~~~~g--~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~---~~~~~~~~ifaiGd~~~~---~~ 396 (443)
.+| .....| .++++|.||+|+|+.|+...++...++..+++|++.+|.. .++|+.++|||+||+..+ +.
T Consensus 555 ~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv 634 (654)
T PRK12769 555 AQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVV 634 (654)
T ss_pred CCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHH
Confidence 111 011122 2699999999999999964566666887788899988842 468999999999999865 34
Q ss_pred cchHHHHHHHHHHHHhhH
Q 013435 397 GASIDARRISEDIEHQWN 414 (443)
Q Consensus 397 ~a~~~a~~~a~~i~~~l~ 414 (443)
.|+.+|+.+|.+|..+|.
T Consensus 635 ~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 635 TAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 789999999999998874
No 65
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=5.2e-28 Score=240.50 Aligned_cols=288 Identities=18% Similarity=0.224 Sum_probs=184.1
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...++|+|||+|++|+++|..|++.|++|+|+|+.+.+||.+... + +.+....++.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------i---------p~~~~~~~~~ 196 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------I---------PDFKLEKEVI 196 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------C---------CcccCCHHHH
Confidence 456799999999999999999999999999999999888765331 1 1112224455
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
....+++.++++++++++.+.. + +.... ....||.||+|||.. .+..+.+||.+. .+ +...
T Consensus 197 ~~~~~~~~~~gv~~~~~~~v~~-~---------~~~~~------~~~~~d~vvlAtGa~-~~~~l~ipG~~~-~g-V~~~ 257 (471)
T PRK12810 197 DRRIELMEAEGIEFRTNVEVGK-D---------ITAEE------LLAEYDAVFLGTGAY-KPRDLGIPGRDL-DG-VHFA 257 (471)
T ss_pred HHHHHHHHhCCcEEEeCCEECC-c---------CCHHH------HHhhCCEEEEecCCC-CCCcCCCCCccC-CC-cEEH
Confidence 5555667778888888875521 0 11111 235799999999963 356667887543 22 1111
Q ss_pred C-------------CCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCC-ccEEEEecCCccccccccCCCccchhhhhhh
Q 013435 192 S-------------SYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNA-RPSLVVRDTVHVLPQEMIGRSTFGLSMCLLK 257 (443)
Q Consensus 192 ~-------------~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~ 257 (443)
. .........+++|+|||+|++|+|+|..+.+.|. +|+.+.+.+ +|..... ......
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~---~~~~~~~------~~~~~~ 328 (471)
T PRK12810 258 MDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP---MPPSRRN------KNNPWP 328 (471)
T ss_pred HHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC---CCccccc------cccCCc
Confidence 0 0011123468999999999999999999998885 688544332 2211100 000000
Q ss_pred hchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC-C-c---
Q 013435 258 WFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH-H-A--- 330 (443)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~-~-~--- 330 (443)
.++... ..+.+.+.+++++.+ +.++.. + .
T Consensus 329 ~~~~~~--------------------------------------------~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~ 364 (471)
T PRK12810 329 YWPMKL--------------------------------------------EVSNAHEEGVEREFNVQTKEFEGENGKVTG 364 (471)
T ss_pred ccchHH--------------------------------------------HHHHHHHcCCeEEeccCceEEEccCCEEEE
Confidence 000000 011112223333332 333321 1 1
Q ss_pred E-----EEcC-------C--cEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC--
Q 013435 331 A-----EFID-------G--SIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-- 394 (443)
Q Consensus 331 v-----~~~~-------g--~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-- 394 (443)
+ .+.+ | .++++|.||+|+|+.|+...++...++..+++|++.+|.++++|+.|+||++||+..+
T Consensus 365 V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~ 444 (471)
T PRK12810 365 VKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS 444 (471)
T ss_pred EEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch
Confidence 1 1112 2 4699999999999999864577766777777899998745778999999999999864
Q ss_pred -cccchHHHHHHHHHHHHhhHH
Q 013435 395 -LLGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 395 -~~~a~~~a~~~a~~i~~~l~~ 415 (443)
+..|..+|+.+|.+|..+|..
T Consensus 445 ~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 445 LVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc
Confidence 346899999999999998853
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.95 E-value=6.5e-27 Score=231.78 Aligned_cols=292 Identities=18% Similarity=0.208 Sum_probs=183.3
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
.+.++|+|||+||+|+++|..|++.|++++|+|+.+.+||.+... + +.+....++.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~ 194 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------I---------PSFKLDKAVL 194 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------C---------ccccCCHHHH
Confidence 366799999999999999999999999999999999888755331 1 1111234566
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
....+.+.++|+++++++.|.. . +...+ ....||.||+|||... +..+.+||.+. .+ +++.
T Consensus 195 ~~~~~~~~~~Gv~~~~~~~v~~--------~--~~~~~------~~~~~D~vilAtGa~~-~~~~~i~g~~~-~g-V~~a 255 (467)
T TIGR01318 195 SRRREIFTAMGIEFHLNCEVGR--------D--ISLDD------LLEDYDAVFLGVGTYR-SMRGGLPGEDA-PG-VLQA 255 (467)
T ss_pred HHHHHHHHHCCCEEECCCEeCC--------c--cCHHH------HHhcCCEEEEEeCCCC-CCcCCCCCcCC-CC-cEEH
Confidence 6666777888999888876621 0 11111 2347999999999632 23456777543 11 1110
Q ss_pred --------------CCCC--CCCCCCCCeEEEEccCCCHHHHHHHHhhcCC-ccEEEEecCCccccccccCCCccchhhh
Q 013435 192 --------------SSYK--TGELFRDKNVLVVGCGNSGMEVSLDLCNYNA-RPSLVVRDTVHVLPQEMIGRSTFGLSMC 254 (443)
Q Consensus 192 --------------~~~~--~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~Vt~i~r~~~~~lp~~~~~~~~~~~~~~ 254 (443)
.... ......+++++|||+|.+|+|+|..+.+.|. +||+++|++...+|....
T Consensus 256 ~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~---------- 325 (467)
T TIGR01318 256 LPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR---------- 325 (467)
T ss_pred HHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH----------
Confidence 0000 0112357999999999999999999999985 799999987444443210
Q ss_pred hhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhc---CCCeE---EecC-CcEEe
Q 013435 255 LLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIR---SGNIK---VCRA-IKRLT 327 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~---v~~~-v~~~~ 327 (443)
. .+.+ .+.++.. ........+. ++++. +... ....+
T Consensus 326 -------e-~~~~------------~~~GV~~-----------------~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~ 368 (467)
T TIGR01318 326 -------E-VANA------------REEGVEF-----------------LFNVQPVYIECDEDGRVTGVGLVRTALGEPD 368 (467)
T ss_pred -------H-HHHH------------HhcCCEE-----------------EecCCcEEEEECCCCeEEEEEEEEEEecccC
Confidence 0 0000 0111110 0000000110 11111 1000 00000
Q ss_pred CCc---EEE--cCCcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCC---CCCCcCCCceEEEeeccCCc---c
Q 013435 328 HHA---AEF--IDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEF---PNGWKGAHGLYAVGFNKRGL---L 396 (443)
Q Consensus 328 ~~~---v~~--~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~---~~~~~~~~~ifaiGd~~~~~---~ 396 (443)
.+| ... .+..++++|.||+|+|+.|+...++...++..+++|++.+|. .+.+|+.++||++||+..+. .
T Consensus 369 ~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~ 448 (467)
T TIGR01318 369 ADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVV 448 (467)
T ss_pred CCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHH
Confidence 111 001 122368999999999999986456666677777789998883 35678899999999998653 4
Q ss_pred cchHHHHHHHHHHHHhh
Q 013435 397 GASIDARRISEDIEHQW 413 (443)
Q Consensus 397 ~a~~~a~~~a~~i~~~l 413 (443)
.|+.+|+.+|.+|+.+|
T Consensus 449 ~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 449 TAVAEGRQAAQGILDWL 465 (467)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 68999999999999876
No 67
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-27 Score=210.46 Aligned_cols=289 Identities=20% Similarity=0.265 Sum_probs=214.9
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCC-CCCCCCCCCCCCHH
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPL-MPFPSNFPTYPTKQ 108 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 108 (443)
.....|||+||||||+|.++|.+.++.|.+.-++-. .+||.-.. .+.+.. ...+ +....
T Consensus 207 ~~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvld-------------T~~IENfIsv~-----~teGp 266 (520)
T COG3634 207 NAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLD-------------TMGIENFISVP-----ETEGP 266 (520)
T ss_pred hccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeecc-------------ccchhheeccc-----cccch
Confidence 346789999999999999999999999998777643 35653211 111111 1111 12467
Q ss_pred HHHHHHHHHHHHcCCccccceeEEEEEEeCC-CCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCccc
Q 013435 109 QFLTYLETYTNHFGLDPVFNTTVVNAEYDHL-SRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGP 187 (443)
Q Consensus 109 ~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~ 187 (443)
.+...+....+++.+.+..-.+.+++.+... .+...|++.+| -.+.++.+|+|||+.++. ..+||.+.|+..
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nG-----avLkaktvIlstGArWRn--~nvPGE~e~rnK 339 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANG-----AVLKARTVILATGARWRN--MNVPGEDEYRNK 339 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCC-----ceeccceEEEecCcchhc--CCCCchHHHhhC
Confidence 8888899999999998866666777777432 25677888887 799999999999986553 489999999888
Q ss_pred EeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHH
Q 013435 188 IFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQF 267 (443)
Q Consensus 188 ~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (443)
.+..|..|+...+++|+|+|||||+||+|.|..|+..-.+||++.-.+. -. .|..
T Consensus 340 GVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e-----Lk--------------------AD~V 394 (520)
T COG3634 340 GVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE-----LK--------------------ADAV 394 (520)
T ss_pred CeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh-----hh--------------------hHHH
Confidence 8999999999999999999999999999999999999999999954441 10 0111
Q ss_pred HHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh-cCCCeEEecC--CcEEeCC-----cEEEc---CC
Q 013435 268 LLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI-RSGNIKVCRA--IKRLTHH-----AAEFI---DG 336 (443)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~--v~~~~~~-----~v~~~---~g 336 (443)
. .+.+ .-.|+.+..+ .+++.++ |+.+. +|
T Consensus 395 L----------------------------------------q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sg 434 (520)
T COG3634 395 L----------------------------------------QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSG 434 (520)
T ss_pred H----------------------------------------HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCC
Confidence 0 0111 1247777777 5667665 34443 34
Q ss_pred c--EEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC----CcccchHHHHHHHHHHH
Q 013435 337 S--IENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR----GLLGASIDARRISEDIE 410 (443)
Q Consensus 337 ~--~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~----~~~~a~~~a~~~a~~i~ 410 (443)
+ .++-+-|++-+|..||+ +++++. ++.++.|-|.+| ....|+.|||||+|||+. ++..++-.|..++-..-
T Consensus 435 e~~~l~LeGvFVqIGL~PNT-~WLkg~-vel~~rGEIivD-~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AF 511 (520)
T COG3634 435 EEHHLELEGVFVQIGLLPNT-EWLKGA-VELNRRGEIIVD-ARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAF 511 (520)
T ss_pred ceeEEEeeeeEEEEecccCh-hHhhch-hhcCcCccEEEe-cCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhh
Confidence 4 46677899999999999 777776 555789999999 889999999999999985 35567777777776665
Q ss_pred Hhh
Q 013435 411 HQW 413 (443)
Q Consensus 411 ~~l 413 (443)
.++
T Consensus 512 DyL 514 (520)
T COG3634 512 DYL 514 (520)
T ss_pred hhh
Confidence 554
No 68
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=1e-26 Score=238.76 Aligned_cols=295 Identities=17% Similarity=0.186 Sum_probs=185.6
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...++|+|||+||+|+++|..|++.|++|+|+|+.+.+||.|... ++ .+....++.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------------ip---------~~~l~~~~~ 363 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------------IP---------PFKLDKTVL 363 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------------CC---------cccCCHHHH
Confidence 357899999999999999999999999999999999998876542 11 111224555
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEe--
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIF-- 189 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~-- 189 (443)
+...+.+...|+++++++.|.. . ++..+ ....||.||+|||++ .+..+.+||.+. .+...
T Consensus 364 ~~~~~~~~~~Gv~~~~~~~v~~--------~--~~~~~------l~~~~DaV~latGa~-~~~~~~i~g~~~-~gv~~a~ 425 (639)
T PRK12809 364 SQRREIFTAMGIDFHLNCEIGR--------D--ITFSD------LTSEYDAVFIGVGTY-GMMRADLPHEDA-PGVIQAL 425 (639)
T ss_pred HHHHHHHHHCCeEEEcCCccCC--------c--CCHHH------HHhcCCEEEEeCCCC-CCCCCCCCCCcc-CCcEeHH
Confidence 5566677788988888876521 0 12111 234689999999974 334556777543 22111
Q ss_pred --------ecCCCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhhcCC-ccEEEEecCCccccccccCCCccchhhhh
Q 013435 190 --------HSSSYKT-----GELFRDKNVLVVGCGNSGMEVSLDLCNYNA-RPSLVVRDTVHVLPQEMIGRSTFGLSMCL 255 (443)
Q Consensus 190 --------~~~~~~~-----~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~ 255 (443)
....... .....+++|+|||+|.+|+|+|..+.+.|. +||+++|++...+|....
T Consensus 426 ~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~----------- 494 (639)
T PRK12809 426 PFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK----------- 494 (639)
T ss_pred HHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----------
Confidence 0000000 122467999999999999999999998884 799999987433332210
Q ss_pred hhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh---cCCCeEEec-C-C--cEEeC
Q 013435 256 LKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI---RSGNIKVCR-A-I--KRLTH 328 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~-~-v--~~~~~ 328 (443)
+.. .. .+.|+.. ........+ .++++.-+. . + .+.+.
T Consensus 495 ------e~~-~a------------~~eGv~~-----------------~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~ 538 (639)
T PRK12809 495 ------EVV-NA------------REEGVEF-----------------QFNVQPQYIACDEDGRLTAVGLIRTAMGEPGP 538 (639)
T ss_pred ------HHH-HH------------HHcCCeE-----------------EeccCCEEEEECCCCeEEEEEEEEEEecCcCC
Confidence 000 00 0011110 000000011 012221100 0 0 00001
Q ss_pred Cc---EEE--cCCcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCC---CCCcCCCceEEEeeccCC---ccc
Q 013435 329 HA---AEF--IDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFP---NGWKGAHGLYAVGFNKRG---LLG 397 (443)
Q Consensus 329 ~~---v~~--~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~---~~~~~~~~ifaiGd~~~~---~~~ 397 (443)
+| ... .+..++++|.||+|+|+.|+...++.+.++..+++|++.+|.. .++|+.++|||+||+..+ +..
T Consensus 539 ~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~ 618 (639)
T PRK12809 539 DGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVT 618 (639)
T ss_pred CCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHH
Confidence 11 111 1223689999999999999864566666787778899888732 368899999999999865 347
Q ss_pred chHHHHHHHHHHHHhhHH
Q 013435 398 ASIDARRISEDIEHQWNS 415 (443)
Q Consensus 398 a~~~a~~~a~~i~~~l~~ 415 (443)
|+.+|+.+|.+|..+|..
T Consensus 619 Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 619 AMAAGRQAARDMLTLFDT 636 (639)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 899999999999999854
No 69
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.1e-26 Score=201.89 Aligned_cols=329 Identities=17% Similarity=0.155 Sum_probs=206.9
Q ss_pred HhhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEec-CC-CCCcccccC-------CCCceeeecCCc----cccCCC
Q 013435 28 AARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILER-AN-CIASLWQLK-------TYDRLRLHLPKQ----FCQLPL 94 (443)
Q Consensus 28 ~~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~-~~-~~gg~w~~~-------~~~~~~~~~~~~----~~~~~~ 94 (443)
.-.....||.+|||||.+|++||.+++..|.+|.++|- .+ -.|..|.-. +.|...|+...- ..+-..
T Consensus 13 ~~~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~k 92 (503)
T KOG4716|consen 13 RLFSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARK 92 (503)
T ss_pred hhcccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999986 22 245566542 222222211100 000001
Q ss_pred CCCCCCC-CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCC----CeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 95 MPFPSNF-PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLS----RLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 95 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~----~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.|.-.. ..-+.+..+.+..++..+..+.-.+..-+-..++..+.- +...+..... .+++..+.|+.+|||||
T Consensus 93 yGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~-~gk~~~~ta~~fvIatG- 170 (503)
T KOG4716|consen 93 YGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNK-KGKERFLTAENFVIATG- 170 (503)
T ss_pred hCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecC-CCceEEeecceEEEEec-
Confidence 1111110 223466788888888877766544333222233332211 1223443332 23568999999999999
Q ss_pred CCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCcc
Q 013435 170 NAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTF 249 (443)
Q Consensus 170 ~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~ 249 (443)
.+|+.|++||..+| .+ +++......+.+.+.+|||+|.+|+|||..|+..|.+||++.|+-. |
T Consensus 171 -~RPrYp~IpG~~Ey---~I-TSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~--L---------- 233 (503)
T KOG4716|consen 171 -LRPRYPDIPGAKEY---GI-TSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSIL--L---------- 233 (503)
T ss_pred -CCCCCCCCCCceee---ee-cccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEee--c----------
Confidence 79999999997764 23 3333334455677899999999999999999999999999999862 1
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecCCcEEeCC
Q 013435 250 GLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRAIKRLTHH 329 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~ 329 (443)
+-|.+.+..++...++..|+++-. .+.+..++.+.++..++....+
T Consensus 234 ---------------rGFDqdmae~v~~~m~~~Gikf~~--------------~~vp~~Veq~~~g~l~v~~k~t----- 279 (503)
T KOG4716|consen 234 ---------------RGFDQDMAELVAEHMEERGIKFLR--------------KTVPERVEQIDDGKLRVFYKNT----- 279 (503)
T ss_pred ---------------ccccHHHHHHHHHHHHHhCCceee--------------cccceeeeeccCCcEEEEeecc-----
Confidence 111122222222333444443211 1223335555566655533211
Q ss_pred cEEEcCCcEEcccEEEEccCCCCCCCCCccCc-CcCcc-CCCCcCCCCCCCCcCCCceEEEeeccCCcc----cchHHHH
Q 013435 330 AAEFIDGSIENYDAIILATGYKSNVPYWLKDT-EMFSE-KDGFPRMEFPNGWKGAHGLYAVGFNKRGLL----GASIDAR 403 (443)
Q Consensus 330 ~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~-~l~~~-~~G~i~~~~~~~~~~~~~ifaiGd~~~~~~----~a~~~a~ 403 (443)
...++.+-++|.|+||+|..+.+..+..+. ++..| ..|.|.+| +..++++|+|||+||+-.+.. .|...|+
T Consensus 280 --~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~-~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGr 356 (503)
T KOG4716|consen 280 --NTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVD-DEEATNVPYVYAVGDILEDKPELTPVAIQSGR 356 (503)
T ss_pred --cccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccC-hHHhcCCCceEEecceecCCcccchhhhhhch
Confidence 111233457999999999999997776655 77665 56889999 788999999999999876533 4666777
Q ss_pred HHHHHHHHh
Q 013435 404 RISEDIEHQ 412 (443)
Q Consensus 404 ~~a~~i~~~ 412 (443)
.+|+.+...
T Consensus 357 lLa~Rlf~g 365 (503)
T KOG4716|consen 357 LLARRLFAG 365 (503)
T ss_pred HHHHHHhcC
Confidence 777666543
No 70
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.94 E-value=2.8e-26 Score=206.87 Aligned_cols=329 Identities=16% Similarity=0.090 Sum_probs=201.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCCccccCCCC-CCCC----CCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPKQFCQLPLM-PFPS----NFPTYPT 106 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~ 106 (443)
..||++|||+||+|..+|.+.++.|++.+.+|++..+||++-+ .+.|+..+.....+|+.... .+.. ..+.-..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 6899999999999999999999999999999999999997754 45555444333222222111 0000 0011112
Q ss_pred HHHHHHHHH-----------HHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 107 KQQFLTYLE-----------TYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 107 ~~~~~~~l~-----------~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
.+.+.+... ..+++.++.+..+ .-.--+...+.+...++ +...+.++++|+||| |. .
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG-----~gsf~~p~~V~v~k~dg---~~~ii~aKnIiiATG--Se--V 185 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKG-----FGSFLDPNKVSVKKIDG---EDQIIKAKNIIIATG--SE--V 185 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEee-----eEeecCCceEEEeccCC---CceEEeeeeEEEEeC--Cc--c
Confidence 233333322 2333333332111 11111123333444443 558999999999999 43 3
Q ss_pred CCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhh
Q 013435 176 PYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCL 255 (443)
Q Consensus 176 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~ 255 (443)
+++||+.--. ..+.+++-.-....-+++++|||+|.+|+|+..-..++|.+||++.--++ +.|.-+
T Consensus 186 ~~~PGI~IDe-kkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~-i~~~mD------------ 251 (506)
T KOG1335|consen 186 TPFPGITIDE-KKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQ-IGGVMD------------ 251 (506)
T ss_pred CCCCCeEecC-ceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhh-hccccC------------
Confidence 3556654211 22333333333445689999999999999999999999999999976652 222211
Q ss_pred hhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--C-c
Q 013435 256 LKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--H-A 330 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~-~ 330 (443)
.++...+ ...|.+.++....+ +...+. + .
T Consensus 252 -----~Eisk~~-----------------------------------------qr~L~kQgikF~l~tkv~~a~~~~dg~ 285 (506)
T KOG1335|consen 252 -----GEISKAF-----------------------------------------QRVLQKQGIKFKLGTKVTSATRNGDGP 285 (506)
T ss_pred -----HHHHHHH-----------------------------------------HHHHHhcCceeEeccEEEEeeccCCCc
Confidence 1111111 12222334444333 222222 1 1
Q ss_pred --EEEc---CC--cEEcccEEEEccCCCCCCCCCccCc-CcCccCCCCcCCCCCCCCcCCCceEEEeeccCCcc---cch
Q 013435 331 --AEFI---DG--SIENYDAIILATGYKSNVPYWLKDT-EMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGLL---GAS 399 (443)
Q Consensus 331 --v~~~---~g--~~~~~D~vi~atG~~~~~~~~~~~~-~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~~---~a~ 399 (443)
+.+. ++ ++++||++++++|++|-+..|-.+. ++..|+.|++.++ ...++.+|+||+|||++.+.+ .|.
T Consensus 286 v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhkAe 364 (506)
T KOG1335|consen 286 VEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHKAE 364 (506)
T ss_pred eEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecc-ccccccCCceEEecccCCcchhhhhhh
Confidence 2222 23 3689999999999999987776655 8888899999999 788899999999999998755 456
Q ss_pred HHHHHHHHHHHHhhHHHHHhHhhhhccccCCCCCcc
Q 013435 400 IDARRISEDIEHQWNSEAKKLMAFSRSLPLPPNQDL 435 (443)
Q Consensus 400 ~~a~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 435 (443)
.+|-.+.+.|+..-- +..+.-.++..+..|+..-+
T Consensus 365 eegI~~VE~i~g~~~-hv~ynciP~v~ythPEvawV 399 (506)
T KOG1335|consen 365 EEGIAAVEGIAGGHG-HVDYNCIPSVVYTHPEVAWV 399 (506)
T ss_pred hhchhheeeecccCc-ccccCCCCceeecccceeee
Confidence 688888888876531 12222245555555554433
No 71
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.94 E-value=4e-26 Score=225.35 Aligned_cols=274 Identities=20% Similarity=0.296 Sum_probs=183.0
Q ss_pred HHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCC-CCHHHHHHH-HHHHHHHcCC
Q 013435 48 ATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTY-PTKQQFLTY-LETYTNHFGL 123 (443)
Q Consensus 48 ~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~ 123 (443)
++|..|.+. ..+|+|||+++.++-. . +.++... .+. ....++..+ ..++..++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~--~--------------~~l~~~~-----~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFA--N--------------CGLPYVI-----GGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEE--c--------------CCCCeEe-----ccccCCHHHcccCCHHHHHHhcCC
Confidence 467888876 4789999998854210 0 0001000 011 112333333 2345577899
Q ss_pred ccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEE--eCEEEEccCCCCCCccCCCCCCCCCcccEeecCCCCCC----
Q 013435 124 DPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYL--CQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTG---- 197 (443)
Q Consensus 124 ~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~--a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~---- 197 (443)
+++.+++|+.++..+ ..+.+.... .+ ..+. ||+||+||| +.|..|.+||.+. ..++......+.
T Consensus 60 ~~~~~~~V~~id~~~--~~v~~~~~~--~~--~~~~~~yd~lIiATG--~~p~~~~i~G~~~--~~v~~~~~~~~~~~~~ 129 (427)
T TIGR03385 60 DVKTNHEVIEVNDER--QTVVVRNNK--TN--ETYEESYDYLILSPG--ASPIVPNIEGINL--DIVFTLRNLEDTDAIK 129 (427)
T ss_pred eEEecCEEEEEECCC--CEEEEEECC--CC--CEEecCCCEEEECCC--CCCCCCCCCCcCC--CCEEEECCHHHHHHHH
Confidence 988899999998765 554444321 11 3566 999999999 6888888888652 112222211110
Q ss_pred ---CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHH
Q 013435 198 ---ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWL 274 (443)
Q Consensus 198 ---~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (443)
....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+....+.. .....+
T Consensus 130 ~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~-----------------~~~~~~--------- 183 (427)
T TIGR03385 130 QYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLF-----------------DEEMNQ--------- 183 (427)
T ss_pred HHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcccc-----------------CHHHHH---------
Confidence 013568999999999999999999999999999998873211111 111111
Q ss_pred HhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCcE--EEcCCcEEcccEEEEccCC
Q 013435 275 MLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHAA--EFIDGSIENYDAIILATGY 350 (443)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~v--~~~~g~~~~~D~vi~atG~ 350 (443)
.+.+.+++.+|+++.+ +.++..++. .+.+|+++++|.||+|+|+
T Consensus 184 --------------------------------~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 184 --------------------------------IVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGI 231 (427)
T ss_pred --------------------------------HHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCc
Confidence 1123344556777765 667765443 6678889999999999999
Q ss_pred CCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------------cccchHHHHHHHHHHHHh
Q 013435 351 KSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------------LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------------~~~a~~~a~~~a~~i~~~ 412 (443)
+|++ .++...++..+++|++.+| ++++++.|+|||+|||+.. ...|..||+.+|++|.+.
T Consensus 232 ~p~~-~~l~~~gl~~~~~G~i~vd-~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 232 KPNS-ELAKDSGLKLGETGAIWVN-EKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred cCCH-HHHHhcCcccCCCCCEEEC-CCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 9998 5677778877778999999 6778899999999999742 225678999999999865
No 72
>PRK13984 putative oxidoreductase; Provisional
Probab=99.93 E-value=7.4e-26 Score=232.26 Aligned_cols=292 Identities=17% Similarity=0.216 Sum_probs=176.5
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
.....+|+|||+|++|+++|..|.+.|++++|+|+.+.+||.+... ++ .+....++
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i~---------~~~~~~~~ 335 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------IP---------SYRLPDEA 335 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------CC---------cccCCHHH
Confidence 3567789999999999999999999999999999999888754321 11 11122444
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
.....+.+++.+++++.++.|.. + +.... ....||+||+|||.+ .++.+++||.+.. + ++.
T Consensus 336 ~~~~~~~~~~~gv~~~~~~~v~~----~------~~~~~------~~~~yD~vilAtGa~-~~r~l~i~G~~~~-g-v~~ 396 (604)
T PRK13984 336 LDKDIAFIEALGVKIHLNTRVGK----D------IPLEE------LREKHDAVFLSTGFT-LGRSTRIPGTDHP-D-VIQ 396 (604)
T ss_pred HHHHHHHHHHCCcEEECCCEeCC----c------CCHHH------HHhcCCEEEEEcCcC-CCccCCCCCcCCc-C-eEe
Confidence 55555667778888888876621 0 11111 235799999999963 3567788886531 1 121
Q ss_pred cCCCC---------CC-CCCCCCeEEEEccCCCHHHHHHHHhhcCC------ccEEEEec-CCccccccccCCCccchhh
Q 013435 191 SSSYK---------TG-ELFRDKNVLVVGCGNSGMEVSLDLCNYNA------RPSLVVRD-TVHVLPQEMIGRSTFGLSM 253 (443)
Q Consensus 191 ~~~~~---------~~-~~~~~~~v~ViG~G~~~~e~a~~l~~~g~------~Vt~i~r~-~~~~lp~~~~~~~~~~~~~ 253 (443)
..++. .. ....+++|+|||||.+|+|+|..+.+.+. +|+++... ....+|...
T Consensus 397 a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~---------- 466 (604)
T PRK13984 397 ALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADM---------- 466 (604)
T ss_pred HHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCH----------
Confidence 11110 01 11236899999999999999999998753 67876432 211112110
Q ss_pred hhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh--cCCCeEEec-C-CcE-EeC
Q 013435 254 CLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI--RSGNIKVCR-A-IKR-LTH 328 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~-~-v~~-~~~ 328 (443)
..+.+ .. +.++.. ........+ .+++++-+. . +.. .+.
T Consensus 467 -------~e~~~-~~------------~~GV~i-----------------~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~ 509 (604)
T PRK13984 467 -------EEIEE-GL------------EEGVVI-----------------YPGWGPMEVVIENDKVKGVKFKKCVEVFDE 509 (604)
T ss_pred -------HHHHH-HH------------HcCCEE-----------------EeCCCCEEEEccCCEEEEEEEEEEeeccCC
Confidence 00000 00 001100 000000000 112221100 0 000 011
Q ss_pred Cc---EE--EcCCcEEcccEEEEccCCCCCCCCCccCc--CcCccCCCCcCCCCCCCCcCCCceEEEeeccCC--cccch
Q 013435 329 HA---AE--FIDGSIENYDAIILATGYKSNVPYWLKDT--EMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG--LLGAS 399 (443)
Q Consensus 329 ~~---v~--~~~g~~~~~D~vi~atG~~~~~~~~~~~~--~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~--~~~a~ 399 (443)
+| .. ..++.++++|.||+|+|++|++..+..+. ++.. ++|++.+| ++++|++++|||+||++.+ ...|+
T Consensus 510 ~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd-~~~~Ts~~gVfAaGD~~~~~~~v~Ai 587 (604)
T PRK13984 510 EGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTN-EYGQTSIPWLFAGGDIVHGPDIIHGV 587 (604)
T ss_pred CCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeC-CCCccCCCCEEEecCcCCchHHHHHH
Confidence 11 01 11234799999999999999984332222 3443 57889999 6788999999999999865 45788
Q ss_pred HHHHHHHHHHHHhhH
Q 013435 400 IDARRISEDIEHQWN 414 (443)
Q Consensus 400 ~~a~~~a~~i~~~l~ 414 (443)
.+|+.+|.+|..+|.
T Consensus 588 ~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 588 ADGYWAAEGIDMYLR 602 (604)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998874
No 73
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=209.88 Aligned_cols=261 Identities=20% Similarity=0.269 Sum_probs=186.3
Q ss_pred CeEEECCCHHHHHHHHHHHHcCC--CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 36 GPVIVGAGPSGLATAACLTEKGV--PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
.++|||+|++|..|+..+.+.|. +++++.++..+. |...++..... -....+...
T Consensus 76 ~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~Ls~~~~----------------~~~~~~a~r 132 (478)
T KOG1336|consen 76 HFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRARLSKFLL----------------TVGEGLAKR 132 (478)
T ss_pred eEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchhccccee----------------ecccccccc
Confidence 49999999999999999999985 888887665431 22211110000 011222233
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC-
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS- 192 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~- 192 (443)
..++.+..++++++++.|+.++... .. |.+.+| ..+.|++++|||| +.++.|++||.+.. .++..
T Consensus 133 ~~e~Yke~gIe~~~~t~v~~~D~~~--K~--l~~~~G-----e~~kys~LilATG--s~~~~l~~pG~~~~---nv~~ir 198 (478)
T KOG1336|consen 133 TPEFYKEKGIELILGTSVVKADLAS--KT--LVLGNG-----ETLKYSKLIIATG--SSAKTLDIPGVELK---NVFYLR 198 (478)
T ss_pred ChhhHhhcCceEEEcceeEEeeccc--cE--EEeCCC-----ceeecceEEEeec--CccccCCCCCcccc---ceeeec
Confidence 3345667799999999999999876 44 777776 8999999999999 68889999997742 12221
Q ss_pred CCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHH
Q 013435 193 SYKTG-----ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQF 267 (443)
Q Consensus 193 ~~~~~-----~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (443)
+..+. .......|+++|+|..|+|+|..|...+.+||++++.+ +.+|... ...
T Consensus 199 eieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf----------------~~~----- 256 (478)
T KOG1336|consen 199 EIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLF----------------GPS----- 256 (478)
T ss_pred cHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhh----------------hHH-----
Confidence 11111 11246789999999999999999999999999999988 5545421 111
Q ss_pred HHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC------cEEEcCCcEE
Q 013435 268 LLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH------AAEFIDGSIE 339 (443)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~------~v~~~~g~~~ 339 (443)
+...+.+.+.+.+|+++.+ +.++..+ .+.+.+|+++
T Consensus 257 ------------------------------------i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l 300 (478)
T KOG1336|consen 257 ------------------------------------IGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTL 300 (478)
T ss_pred ------------------------------------HHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEe
Confidence 1112233444556666654 4444432 3788999999
Q ss_pred cccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC
Q 013435 340 NYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG 394 (443)
Q Consensus 340 ~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~ 394 (443)
++|.||+++|.+|++ .++.. +...++.|.|.|| ...++++|+|||+||++..
T Consensus 301 ~adlvv~GiG~~p~t-~~~~~-g~~~~~~G~i~V~-~~f~t~~~~VyAiGDva~f 352 (478)
T KOG1336|consen 301 EADLVVVGIGIKPNT-SFLEK-GILLDSKGGIKVD-EFFQTSVPNVYAIGDVATF 352 (478)
T ss_pred ccCeEEEeecccccc-ccccc-cceecccCCEeeh-hceeeccCCcccccceeec
Confidence 999999999999999 56665 5555789999999 8999999999999998854
No 74
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.93 E-value=4.6e-25 Score=219.44 Aligned_cols=307 Identities=18% Similarity=0.217 Sum_probs=181.8
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...++|+|||+|++|+++|..|++.|++|+|+|+.+.+||.... .+ +.+....++.
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~---------------gi---------p~~~~~~~~~ 196 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY---------------GI---------PNMKLDKAIV 196 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec---------------cC---------CCccCCHHHH
Confidence 34579999999999999999999999999999999888764322 11 1111223455
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
....+++++.|+++++++.|. .+ +.... ....||.||+|||.+ .+..+.+||.+. .+ ++.
T Consensus 197 ~~~~~~~~~~Gv~~~~~~~v~-~~---------~~~~~------~~~~~d~VilAtGa~-~~~~l~i~G~~~-~g--V~~ 256 (485)
T TIGR01317 197 DRRIDLLSAEGIDFVTNTEIG-VD---------ISADE------LKEQFDAVVLAGGAT-KPRDLPIPGREL-KG--IHY 256 (485)
T ss_pred HHHHHHHHhCCCEEECCCEeC-Cc---------cCHHH------HHhhCCEEEEccCCC-CCCcCCCCCcCC-CC--cEe
Confidence 555566777899988887663 11 11111 346799999999963 367778888543 22 111
Q ss_pred C-C--------CC-------CCCCCCCCeEEEEccCCCHHHHHHHHhhcC-CccEEEEecCCccccccccCCCccchhhh
Q 013435 192 S-S--------YK-------TGELFRDKNVLVVGCGNSGMEVSLDLCNYN-ARPSLVVRDTVHVLPQEMIGRSTFGLSMC 254 (443)
Q Consensus 192 ~-~--------~~-------~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g-~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~ 254 (443)
. . .. ......+++|+|||+|++|+|+|..+.+.+ .+|+++.+.+. .++.... ...
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~-~~~~~~~-------~~~ 328 (485)
T TIGR01317 257 AMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK-PPEARAK-------DNP 328 (485)
T ss_pred HHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC-Chhhccc-------ccC
Confidence 1 0 00 112246899999999999999998888887 57999988763 1111000 000
Q ss_pred hhhhchhHH-HHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh-cC--CCeEEec-C-Cc-EEe
Q 013435 255 LLKWFPVRL-VDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI-RS--GNIKVCR-A-IK-RLT 327 (443)
Q Consensus 255 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~v~v~~-~-v~-~~~ 327 (443)
+..+ +... .+.... . -....++. +.........+ .+ +.+.-.. . +. ..+
T Consensus 329 ~~~~-~~~~e~~~a~~---e----~~~~~gv~----------------~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 384 (485)
T TIGR01317 329 WPEW-PRVYRVDYAHE---E----AAAHYGRD----------------PREYSILTKEFIGDDEGKVTALRTVRVEWKKS 384 (485)
T ss_pred CCcc-chhhhhHHHHH---h----hhhhcCcc----------------ceEEecCcEEEEEcCCCeEEEEEEEEEEeccC
Confidence 0000 0000 000000 0 00000000 00000000111 00 1111000 0 00 001
Q ss_pred CCc----EEEc-CCcEEcccEEEEccCCC-CCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccc
Q 013435 328 HHA----AEFI-DGSIENYDAIILATGYK-SNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGA 398 (443)
Q Consensus 328 ~~~----v~~~-~g~~~~~D~vi~atG~~-~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a 398 (443)
.+| +... +..++++|.||+|+|+. |++ .++...++..+++|++.++.++++|+.++|||+||+..+ +..|
T Consensus 385 ~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~-~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~A 463 (485)
T TIGR01317 385 QDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQ-ILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWA 463 (485)
T ss_pred CCCCccceecCCceEEEECCEEEEccCcCCCcc-ccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHH
Confidence 111 1111 22369999999999997 776 577766777667898865547889999999999999864 3478
Q ss_pred hHHHHHHHHHHHHhhHH
Q 013435 399 SIDARRISEDIEHQWNS 415 (443)
Q Consensus 399 ~~~a~~~a~~i~~~l~~ 415 (443)
..+|+.+|.+|..+|..
T Consensus 464 v~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 464 INEGRKAAAAVDRYLMG 480 (485)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 89999999999998854
No 75
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.93 E-value=1.7e-24 Score=212.01 Aligned_cols=332 Identities=18% Similarity=0.154 Sum_probs=183.9
Q ss_pred hHhhhhcCCCeEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCC
Q 013435 27 SAARRIMVPGPVIVGAGPSGLATAACLTE--KGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTY 104 (443)
Q Consensus 27 ~~~~~~~~~dvvIIG~G~aGl~~A~~l~~--~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (443)
++.+.....+|+||||||+|+++|..|++ .|++|+|+|+.+.+||..+... .+.+
T Consensus 19 ~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv-----------------------aP~~ 75 (491)
T PLN02852 19 SSSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV-----------------------APDH 75 (491)
T ss_pred CCCCCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc-----------------------CCCc
Confidence 33444567789999999999999999997 6999999999998888654321 0223
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGF 184 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~ 184 (443)
+....+...+.+.....++.++.+..|- . . ++..+ ....||.||+|||+. .++.+.+||.+.
T Consensus 76 ~~~k~v~~~~~~~~~~~~v~~~~nv~vg-----~---d--vtl~~------L~~~yDaVIlAtGa~-~~~~l~IpG~d~- 137 (491)
T PLN02852 76 PETKNVTNQFSRVATDDRVSFFGNVTLG-----R---D--VSLSE------LRDLYHVVVLAYGAE-SDRRLGIPGEDL- 137 (491)
T ss_pred chhHHHHHHHHHHHHHCCeEEEcCEEEC-----c---c--ccHHH------HhhhCCEEEEecCCC-CCCCCCCCCCCC-
Confidence 3445566666666666677766654441 1 1 33333 234799999999963 235667888553
Q ss_pred cccEeecCCC----------CC--CCCCCCCeEEEEccCCCHHHHHHHHhhc--------------------C-CccEEE
Q 013435 185 RGPIFHSSSY----------KT--GELFRDKNVLVVGCGNSGMEVSLDLCNY--------------------N-ARPSLV 231 (443)
Q Consensus 185 ~~~~~~~~~~----------~~--~~~~~~~~v~ViG~G~~~~e~a~~l~~~--------------------g-~~Vt~i 231 (443)
.+ ++...++ +. .....+++|+|||+|++|+|+|..|++. + .+|+++
T Consensus 138 ~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv 216 (491)
T PLN02852 138 PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLV 216 (491)
T ss_pred CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEE
Confidence 11 1111111 00 0113578999999999999999998865 4 569999
Q ss_pred EecCCccccccccCCCccchhhhh--hh----hchhHH-----------HHHHHHHHHHHHhcCccccCC-CCCCCCCcc
Q 013435 232 VRDTVHVLPQEMIGRSTFGLSMCL--LK----WFPVRL-----------VDQFLLLMSWLMLGDTSQFGL-IRPKLGPLE 293 (443)
Q Consensus 232 ~r~~~~~lp~~~~~~~~~~~~~~~--~~----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 293 (443)
.|+...-.+... .++...+ .. .-+..+ ..+..+....++.+...+..- ..+....+.
T Consensus 217 ~RRg~~~~~ft~-----~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~ 291 (491)
T PLN02852 217 GRRGPVQAACTA-----KELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELH 291 (491)
T ss_pred EcCChHhCCCCH-----HHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEE
Confidence 999832211110 0111000 00 000000 000100011111110000000 000001111
Q ss_pred ccccCCCcccccccchhhhc--C--CC---eEEecC-CcEEeCCc--EEEcCC--cEEcccEEEEccCCC--CCCCCC-c
Q 013435 294 LKNVSGKTPVLDVGTLAKIR--S--GN---IKVCRA-IKRLTHHA--AEFIDG--SIENYDAIILATGYK--SNVPYW-L 358 (443)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~--~--~~---v~v~~~-v~~~~~~~--v~~~~g--~~~~~D~vi~atG~~--~~~~~~-~ 358 (443)
++.+. .|. +.+. + ++ +++... +..-..++ .....| ++++||.||.++|++ |.. .+ +
T Consensus 292 ~~f~~--sP~------ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~-~l~f 362 (491)
T PLN02852 292 FVFFR--NPT------RFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVD-GLPF 362 (491)
T ss_pred EEccC--CCe------EEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCC-CCcc
Confidence 11111 000 0010 0 11 111111 00000011 111123 368999999999998 443 32 3
Q ss_pred cC-cCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHhhHH
Q 013435 359 KD-TEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 359 ~~-~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~l~~ 415 (443)
.. .++..+.+|++.++ +...|+.|||||+||+.++ +..++.+|+.+|.+|..++..
T Consensus 363 ~~~~gv~~n~~G~V~~d-~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 363 DHKRGVVPNVHGRVLSS-ASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred ccCcCeeECCCceEEeC-CCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 33 35666778999988 5567899999999999864 447889999999999998754
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.93 E-value=3.7e-25 Score=224.92 Aligned_cols=276 Identities=17% Similarity=0.212 Sum_probs=179.8
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
.....+|+|||+||+|+++|..|++.|++|+++|+.+.+||.++.. + +.+....++
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------i---------p~~~~~~~~ 189 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------I---------PAYRLPREV 189 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------C---------CCccCCHHH
Confidence 3556789999999999999999999999999999999998865431 1 111222344
Q ss_pred HHHHHHHHHHcCCccccceeE-EEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEe
Q 013435 111 LTYLETYTNHFGLDPVFNTTV-VNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIF 189 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V-~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~ 189 (443)
...-.+.+.++|+.+.+++.+ .++.. .. ....+|.||+|+|.. .+..+.+++... .+. +
T Consensus 190 ~~~~l~~~~~~Gv~~~~~~~~~~~~~~-----------~~------~~~~~D~Vi~AtG~~-~~~~~~i~g~~~-~gv-~ 249 (564)
T PRK12771 190 LDAEIQRILDLGVEVRLGVRVGEDITL-----------EQ------LEGEFDAVFVAIGAQ-LGKRLPIPGEDA-AGV-L 249 (564)
T ss_pred HHHHHHHHHHCCCEEEeCCEECCcCCH-----------HH------HHhhCCEEEEeeCCC-CCCcCCCCCCcc-CCc-E
Confidence 444445566778877766544 22111 00 123589999999963 233445666432 221 1
Q ss_pred ecCCC-----CCCCCCCCCeEEEEccCCCHHHHHHHHhhcC-CccEEEEecCCccccccccCCCccchhhhhhhhchhHH
Q 013435 190 HSSSY-----KTGELFRDKNVLVVGCGNSGMEVSLDLCNYN-ARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRL 263 (443)
Q Consensus 190 ~~~~~-----~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g-~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 263 (443)
....+ .......+++|+|||+|.+|+|++..+.+.+ .+|+++.|.+...+|... ...
T Consensus 250 ~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~-----------------~~~ 312 (564)
T PRK12771 250 DAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHD-----------------EEI 312 (564)
T ss_pred EHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCH-----------------HHH
Confidence 11111 1112345789999999999999999999888 679999998743222211 000
Q ss_pred HHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe--------------
Q 013435 264 VDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT-------------- 327 (443)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~-------------- 327 (443)
. .+.+.+++++.+ +.++.
T Consensus 313 ~----------------------------------------------~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~ 346 (564)
T PRK12771 313 E----------------------------------------------EALREGVEINWLRTPVEIEGDENGATGLRVITV 346 (564)
T ss_pred H----------------------------------------------HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEE
Confidence 0 000111222211 11111
Q ss_pred ------CCc-EE--EcCCcEEcccEEEEccCCCCCCCCCccC-cCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---
Q 013435 328 ------HHA-AE--FIDGSIENYDAIILATGYKSNVPYWLKD-TEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG--- 394 (443)
Q Consensus 328 ------~~~-v~--~~~g~~~~~D~vi~atG~~~~~~~~~~~-~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~--- 394 (443)
.+| .. ..+..++++|.||+|+|+.|+. .++.+ .++. +++|++.+|..++.|+.++||++||+..+
T Consensus 347 ~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~ 424 (564)
T PRK12771 347 EKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS-AGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRT 424 (564)
T ss_pred EecccCCCCCeeecCCceEEEECCEEEECcCCCCch-hhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCCchH
Confidence 111 00 1112478999999999999987 56664 4676 67899999965888999999999999864
Q ss_pred cccchHHHHHHHHHHHHhhHH
Q 013435 395 LLGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 395 ~~~a~~~a~~~a~~i~~~l~~ 415 (443)
+..|..+|+.+|.+|...|..
T Consensus 425 v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 425 VTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 447889999999999999864
No 77
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.93 E-value=1.8e-25 Score=223.28 Aligned_cols=330 Identities=17% Similarity=0.172 Sum_probs=221.8
Q ss_pred ccccc-cccchhhhhHhhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccC
Q 013435 14 RVHDH-FNNKKAAISAARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQL 92 (443)
Q Consensus 14 ~~~~~-~~~~~~~~~~~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~ 92 (443)
+++|- |+.+||+|-+|.-++.++|.|||+||+|+++|.+|.+.|+.|+++||.+..||...+ .+
T Consensus 1764 aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y---------------gi 1828 (2142)
T KOG0399|consen 1764 AIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY---------------GI 1828 (2142)
T ss_pred HHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee---------------cC
Confidence 57777 899999999999999999999999999999999999999999999999999986433 11
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 93 PLMPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+.......+.+.-.++..+.|+++..++++- .. +..+. -.-..|.||+|+|. ..
T Consensus 1829 ---------pnmkldk~vv~rrv~ll~~egi~f~tn~eig--------k~--vs~d~------l~~~~daiv~a~gs-t~ 1882 (2142)
T KOG0399|consen 1829 ---------PNMKLDKFVVQRRVDLLEQEGIRFVTNTEIG--------KH--VSLDE------LKKENDAIVLATGS-TT 1882 (2142)
T ss_pred ---------CccchhHHHHHHHHHHHHhhCceEEeecccc--------cc--ccHHH------HhhccCeEEEEeCC-CC
Confidence 1222345567777778888899987777662 11 22222 34567899999996 46
Q ss_pred CccCCCCCCCCCccc-----EeecC--------CCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCc-cEEEEecCCcc
Q 013435 173 EVVPYIEGMDGFRGP-----IFHSS--------SYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR-PSLVVRDTVHV 238 (443)
Q Consensus 173 p~~p~~~g~~~~~~~-----~~~~~--------~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~-Vt~i~r~~~~~ 238 (443)
|+-.++||-+. ++. .+|.. ........++|+|+|||||.+|-+|...-.++|+. |.-+ .+
T Consensus 1883 prdlpv~grd~-kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~-----el 1956 (2142)
T KOG0399|consen 1883 PRDLPVPGRDL-KGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNF-----EL 1956 (2142)
T ss_pred CcCCCCCCccc-cccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecce-----ee
Confidence 77777887553 221 01110 00111235789999999999999999999999854 4333 44
Q ss_pred ccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeE
Q 013435 239 LPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIK 318 (443)
Q Consensus 239 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (443)
||++. +.+...+.+++|-...-.|.-.......+-+++..|.+.- ..++. -.+|+++
T Consensus 1957 lp~pp---~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vlt-------------------k~f~~-~~~g~v~ 2013 (2142)
T KOG0399|consen 1957 LPQPP---PERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLT-------------------KRFIG-DDNGNVT 2013 (2142)
T ss_pred cCCCC---cccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeee-------------------eeeec-cCCCcee
Confidence 55443 2234444555553222222223333334444555544321 11111 1123333
Q ss_pred EecC--CcEEe-CCc-EEE----cCCcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEee
Q 013435 319 VCRA--IKRLT-HHA-AEF----IDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGF 390 (443)
Q Consensus 319 v~~~--v~~~~-~~~-v~~----~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd 390 (443)
-..- |++.. ..| .++ .+.+.++||.||+|.||..+........++..|+++.|.+..+...+.++++||+||
T Consensus 2014 gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagd 2093 (2142)
T KOG0399|consen 2014 GLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGD 2093 (2142)
T ss_pred eEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeeccc
Confidence 2111 22211 122 222 234578999999999999997667777788888889998887788899999999999
Q ss_pred ccCC---cccchHHHHHHHHHHHHhh
Q 013435 391 NKRG---LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 391 ~~~~---~~~a~~~a~~~a~~i~~~l 413 (443)
|+++ +.+|..+|+.+|+++...+
T Consensus 2094 crrgqslvvwai~egrq~a~~vd~~~ 2119 (2142)
T KOG0399|consen 2094 CRRGQSLVVWAIQEGRQAARQVDELM 2119 (2142)
T ss_pred ccCCceEEEEEehhhhHHHHHHHHHh
Confidence 9986 5699999999999998643
No 78
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.92 E-value=1.5e-24 Score=211.90 Aligned_cols=306 Identities=18% Similarity=0.183 Sum_probs=208.4
Q ss_pred CCeEEECCCHHHHHHHHHHHHc---CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEK---GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
.+++|||.|++|..+..++++. -++++++..++... |....++.. .++-.+.+++.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~v--------------l~~~~~~edi~ 62 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSSV--------------LAGEKTAEDIS 62 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeeccc--------------cCCCccHHHHh
Confidence 3699999999999999999994 36999999887542 333322211 11112445555
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
---.++.++++++++.+..|+.|++.. .. |+++.+ .++.||.+|+||| |.|.+|++||.+...-..+.+
T Consensus 63 l~~~dwy~~~~i~L~~~~~v~~idr~~--k~--V~t~~g-----~~~~YDkLilATG--S~pfi~PiPG~~~~~v~~~R~ 131 (793)
T COG1251 63 LNRNDWYEENGITLYTGEKVIQIDRAN--KV--VTTDAG-----RTVSYDKLIIATG--SYPFILPIPGSDLPGVFVYRT 131 (793)
T ss_pred ccchhhHHHcCcEEEcCCeeEEeccCc--ce--EEccCC-----cEeecceeEEecC--ccccccCCCCCCCCCeeEEec
Confidence 555678888999999999999999876 43 777776 8999999999999 899999999977532222222
Q ss_pred CCCCCC---CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHH
Q 013435 192 SSYKTG---ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFL 268 (443)
Q Consensus 192 ~~~~~~---~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (443)
.+.... .....++.+|||||..|+|+|..|.+.|.+++|++-.+ +++-+.. .
T Consensus 132 i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQL------------------------D 186 (793)
T COG1251 132 IDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQL------------------------D 186 (793)
T ss_pred HHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhh------------------------h
Confidence 111110 12234568999999999999999999999999997766 2211111 0
Q ss_pred HHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEE----eCCcEEEcCCcEEccc
Q 013435 269 LLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRL----THHAAEFIDGSIENYD 342 (443)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~----~~~~v~~~~g~~~~~D 342 (443)
..-..+ +...+.+.+++++.+ +.++ ...++.++||..+++|
T Consensus 187 ~~ag~l---------------------------------L~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad 233 (793)
T COG1251 187 RTAGRL---------------------------------LRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPAD 233 (793)
T ss_pred hHHHHH---------------------------------HHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccce
Confidence 000000 112222334444433 2222 1236899999999999
Q ss_pred EEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC------C-cccchHHHHHHHHHHHHhhHH
Q 013435 343 AIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR------G-LLGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 343 ~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~------~-~~~a~~~a~~~a~~i~~~l~~ 415 (443)
.||+|+|++|++ ++....++..+. | |++| ++.+|+.|+|||+|.|.. + +..+..|++.+|+++......
T Consensus 234 ~VV~a~GIrPn~-ela~~aGlavnr-G-Ivvn-d~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~ 309 (793)
T COG1251 234 LVVMAVGIRPND-ELAKEAGLAVNR-G-IVVN-DYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAE 309 (793)
T ss_pred eEEEeccccccc-HhHHhcCcCcCC-C-eeec-ccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCccc
Confidence 999999999998 788888887744 5 5666 699999999999999873 1 234566899999999877653
Q ss_pred HHHhHhhhhccccCCCCCcc
Q 013435 416 EAKKLMAFSRSLPLPPNQDL 435 (443)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~ 435 (443)
... -...++++.++..+..
T Consensus 310 ~y~-gsv~stkLKv~Gvdl~ 328 (793)
T COG1251 310 AYE-GSVTSTKLKVSGVDVF 328 (793)
T ss_pred ccc-cccchhhhccccccee
Confidence 211 1233445555544433
No 79
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.91 E-value=2.4e-24 Score=203.55 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=128.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC-CCEEEEecCCCCCcccccCC-CCceeeecCCccccCCCCCCCCC-----------
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG-VPSLILERANCIASLWQLKT-YDRLRLHLPKQFCQLPLMPFPSN----------- 100 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------- 100 (443)
+||+|+||.||+++++|..|.+.+ .+++++|+.+.+ .|+..+ .++..+..+- +.++-....|..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~f-l~Dlvt~~~P~s~~sflnYL~~~ 78 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSF-LKDLVTLRDPTSPFSFLNYLHEH 78 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-T-TSSSSTTT-TTSTTSHHHHHHHT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCcccccc-ccccCcCcCCCCcccHHHHHHHc
Confidence 589999999999999999999986 899999998765 587643 3333332220 001111111111
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCC--CeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 101 ---------FPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLS--RLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 101 ---------~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~--~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
-..+|++.++.+|++|.++++.-.++++.+|++|+...+. ..|.|++.+ ..+....+.|+.||+|+|
T Consensus 79 ~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G- 156 (341)
T PF13434_consen 79 GRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATG- 156 (341)
T ss_dssp T-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE----
T ss_pred CChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcC-
Confidence 0235799999999999999999669999999999998743 258999865 344458999999999999
Q ss_pred CCCCccCCCCCCCCCcccEeecCCCCCCC--CCCCCeEEEEccCCCHHHHHHHHhhcCC--ccEEEEecCCcccccccc
Q 013435 170 NAEEVVPYIEGMDGFRGPIFHSSSYKTGE--LFRDKNVLVVGCGNSGMEVSLDLCNYNA--RPSLVVRDTVHVLPQEMI 244 (443)
Q Consensus 170 ~~~p~~p~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~G~~~~e~a~~l~~~g~--~Vt~i~r~~~~~lp~~~~ 244 (443)
..|.+|...........++|++++.... ....++|+|||||.||.|++..|.+.+. +|+|+.|++ .+.|.++.
T Consensus 157 -~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~-~~~~~d~s 233 (341)
T PF13434_consen 157 -GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP-GFFPMDDS 233 (341)
T ss_dssp --EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS-S-EB----
T ss_pred -CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC-ccCCCccc
Confidence 7888885433211125788998764432 5578999999999999999999999875 799999999 45565543
No 80
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.91 E-value=3.9e-23 Score=221.32 Aligned_cols=279 Identities=15% Similarity=0.138 Sum_probs=181.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
..+||+||||||+|+++|..+++.|++|+|+|+.+.+||.+..... ...+ .+..++..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~---------------------~~~g-~~~~~~~~ 219 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE---------------------TIDG-KPAADWAA 219 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc---------------------ccCC-ccHHHHHH
Confidence 4689999999999999999999999999999999988886643210 0001 12344444
Q ss_pred HHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEe--------ec-CCCcEEEEEeCEEEEccCCCCCCccCCCCCCC
Q 013435 113 YLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQ--------QG-LKQEETVYLCQWLIVATGENAEEVVPYIEGMD 182 (443)
Q Consensus 113 ~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~--------~~-~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~ 182 (443)
.+.+.+..+ ++.++.++.|..+.... ....+... .+ ..+....++|+.||+||| +.++.|.+||.+
T Consensus 220 ~~~~~l~~~~~v~v~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATG--a~~r~~pipG~~ 295 (985)
T TIGR01372 220 ATVAELTAMPEVTLLPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATG--AHERPLVFANND 295 (985)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEecCC--eEEEEEEeeeccccccCCccccceEEEEcCEEEEcCC--CCCcCCCCCCCC
Confidence 444444445 47888888888775421 11111110 00 001123799999999999 567777888854
Q ss_pred CCcccEeecCC----CCCC-CCCCCCeEEEEccCCCHHHHHHHHhhcCC-ccEEEEecCCccccccccCCCccchhhhhh
Q 013435 183 GFRGPIFHSSS----YKTG-ELFRDKNVLVVGCGNSGMEVSLDLCNYNA-RPSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 183 ~~~~~~~~~~~----~~~~-~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
. .+ +.++. +... ....+++|+|||+|.+|+|+|..|+..|. .|+++.+++. ..+
T Consensus 296 ~-pg--V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~-~~~---------------- 355 (985)
T TIGR01372 296 R-PG--VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARAD-VSP---------------- 355 (985)
T ss_pred C-CC--cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcc-hhH----------------
Confidence 3 22 22211 1111 12367999999999999999999999995 4777766541 100
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC----c
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH----A 330 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~----~ 330 (443)
.+.+.+++.+|+++.+ +.++.++ +
T Consensus 356 --------------------------------------------------~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~ 385 (985)
T TIGR01372 356 --------------------------------------------------EARAEARELGIEVLTGHVVAATEGGKRVSG 385 (985)
T ss_pred --------------------------------------------------HHHHHHHHcCCEEEcCCeEEEEecCCcEEE
Confidence 0122333456666665 4555443 3
Q ss_pred EEEc----CCcEEcccEEEEccCCCCCCCCCccCcCcC--ccC--CCCcCCCCCCCCcCCCceEEEeeccCC--cccchH
Q 013435 331 AEFI----DGSIENYDAIILATGYKSNVPYWLKDTEMF--SEK--DGFPRMEFPNGWKGAHGLYAVGFNKRG--LLGASI 400 (443)
Q Consensus 331 v~~~----~g~~~~~D~vi~atG~~~~~~~~~~~~~l~--~~~--~G~i~~~~~~~~~~~~~ifaiGd~~~~--~~~a~~ 400 (443)
+.+. ++++++||.|++++|+.|++ .+....+.. .++ .+++. .++.++||++||++.. +..|..
T Consensus 386 V~l~~~~g~~~~i~~D~V~va~G~~Pnt-~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~~~~~~A~~ 458 (985)
T TIGR01372 386 VAVARNGGAGQRLEADALAVSGGWTPVV-HLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGLFGLAAALA 458 (985)
T ss_pred EEEEecCCceEEEECCEEEEcCCcCchh-HHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCccCHHHHHH
Confidence 4443 45679999999999999998 665554432 221 12222 2568999999999864 446888
Q ss_pred HHHHHHHHHHHhhH
Q 013435 401 DARRISEDIEHQWN 414 (443)
Q Consensus 401 ~a~~~a~~i~~~l~ 414 (443)
+|+.+|..|+..+.
T Consensus 459 eG~~Aa~~i~~~lg 472 (985)
T TIGR01372 459 DGAAAGAAAARAAG 472 (985)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999987763
No 81
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=1.6e-22 Score=185.53 Aligned_cols=349 Identities=22% Similarity=0.301 Sum_probs=210.0
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcC-CCEEEEecCCCCCcccccCCC-CceeeecC--Cccc-------cCCCC-----
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKG-VPSLILERANCIASLWQLKTY-DRLRLHLP--KQFC-------QLPLM----- 95 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~~~~~-~~~~~~~~--~~~~-------~~~~~----- 95 (443)
..++|++.||-||+.+++|..|.+++ .+.+.+|+.+.+ .|+..+. ++..+..+ +.+. .++++
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 35789999999999999999999886 789999999876 5766432 22111111 0000 00000
Q ss_pred -----CCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEE--EEEeecCCCcEEEEEeCEEEEccC
Q 013435 96 -----PFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR--VKTQQGLKQEETVYLCQWLIVATG 168 (443)
Q Consensus 96 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~--v~~~~~~~~~~~~i~a~~vIiAtG 168 (443)
.|-..-..++++.++.+|++|.+..+ -.++++++|+.|...+....+. +.+.++ ..++|+.||+++|
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~-----~~y~ar~lVlg~G 154 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANG-----TVYRARNLVLGVG 154 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCC-----cEEEeeeEEEccC
Confidence 00001134678999999999999988 5789999999774433222332 333332 5999999999999
Q ss_pred CCCCCccCCC-CCCCCCcccEeecCCCCCC-CCCCCCe-EEEEccCCCHHHHHHHHhhc----CCccEEEEecCCccccc
Q 013435 169 ENAEEVVPYI-EGMDGFRGPIFHSSSYKTG-ELFRDKN-VLVVGCGNSGMEVSLDLCNY----NARPSLVVRDTVHVLPQ 241 (443)
Q Consensus 169 ~~~~p~~p~~-~g~~~~~~~~~~~~~~~~~-~~~~~~~-v~ViG~G~~~~e~a~~l~~~----g~~Vt~i~r~~~~~lp~ 241 (443)
.+|.+|+. ..+.. ..++|++++... .+..+++ |.|||||+||.|+...|... ..++.|+.|+. .++|.
T Consensus 155 --~~P~IP~~f~~l~~--~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~-gf~p~ 229 (436)
T COG3486 155 --TQPYIPPCFRSLIG--ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS-GFLPM 229 (436)
T ss_pred --CCcCCChHHhCcCc--cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC-CCCcc
Confidence 78888842 22221 368999887643 3344444 99999999999999999865 35689999999 56677
Q ss_pred cccCCCccchhhhhhhh------chhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhc--
Q 013435 242 EMIGRSTFGLSMCLLKW------FPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIR-- 313 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 313 (443)
+.. .+....+.+.+ +++..++.+...+...+. ++....... ....-+.+.+.
T Consensus 230 d~S---kf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~Yk------gI~~~ti~~-----------Iy~~lY~~~l~~~ 289 (436)
T COG3486 230 DYS---KFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYK------GISFDTIEE-----------IYDLLYEQSLGGR 289 (436)
T ss_pred ccc---hhhhhhcCchhHHHHhcCCHHHHHHHHhhcCcccc------ccCHHHHHH-----------HHHHHHHHHhcCC
Confidence 653 22222222221 444444444332221111 111000000 00001111111
Q ss_pred CCCeEEecC--CcEEeCC--c-EEE-------cCCcEEcccEEEEccCCCCCCCCCccCc--CcCccCCCCcCCCCCCCC
Q 013435 314 SGNIKVCRA--IKRLTHH--A-AEF-------IDGSIENYDAIILATGYKSNVPYWLKDT--EMFSEKDGFPRMEFPNGW 379 (443)
Q Consensus 314 ~~~v~v~~~--v~~~~~~--~-v~~-------~~g~~~~~D~vi~atG~~~~~~~~~~~~--~l~~~~~G~i~~~~~~~~ 379 (443)
+.++.+... +..+... | +.+ .+.+++++|.||+|||+....+.|+... .+..+++|...++.++..
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v 369 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRV 369 (436)
T ss_pred CCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceee
Confidence 123444444 4444332 2 332 2335789999999999998887788776 566678899888876654
Q ss_pred cC----CCceEEEeeccC--Ccc-----cchHHHHHHHHHHHHhh
Q 013435 380 KG----AHGLYAVGFNKR--GLL-----GASIDARRISEDIEHQW 413 (443)
Q Consensus 380 ~~----~~~ifaiGd~~~--~~~-----~a~~~a~~~a~~i~~~l 413 (443)
.. ...||+.|-... ++. .+...+..++..+.+..
T Consensus 370 ~~~~~~~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~~~L~g~~ 414 (436)
T COG3486 370 LWDGPGKGRIFVQNAELHTHGIGAPDLSLGAWRAAVILNSLLGRE 414 (436)
T ss_pred ecCCCCcceEEEecccccccccCCccchHHHHHHHHHHHHHhCcC
Confidence 33 236999997543 333 33444555555555444
No 82
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.89 E-value=2.1e-22 Score=184.95 Aligned_cols=299 Identities=16% Similarity=0.154 Sum_probs=191.3
Q ss_pred HhhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCH
Q 013435 28 AARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTK 107 (443)
Q Consensus 28 ~~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (443)
++...+.++|+|+|+|.+|++++..|-..-++|+++++...+--+|.. |....+....
T Consensus 49 ~~~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLL----------------------pS~~vGTve~ 106 (491)
T KOG2495|consen 49 PKNGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLL----------------------PSTTVGTVEL 106 (491)
T ss_pred CCCCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeecc----------------------CCccccceee
Confidence 445677889999999999999999999889999999998754222111 1111233344
Q ss_pred HHHHHHHHHHHHHcCCcc-ccceeEEEEEEeCCCCeEEEEEeecCC-CcEEEEEeCEEEEccCCCCCCccCCCCCCCCCc
Q 013435 108 QQFLTYLETYTNHFGLDP-VFNTTVVNAEYDHLSRLWRVKTQQGLK-QEETVYLCQWLIVATGENAEEVVPYIEGMDGFR 185 (443)
Q Consensus 108 ~~~~~~l~~~~~~~~~~v-~~~~~V~~i~~~~~~~~~~v~~~~~~~-~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~ 185 (443)
..+.+.++..+.+....+ .+..+.+.|+... ..+.+....... ..+..+.||++|+|+| ..++.+.+||+.++.
T Consensus 107 rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~--k~V~~~s~t~~~~~~e~~i~YDyLViA~G--A~~~TFgipGV~e~~ 182 (491)
T KOG2495|consen 107 RSIVEPIRAIARKKNGEVKYLEAECTKIDPDN--KKVHCRSLTADSSDKEFVIGYDYLVIAVG--AEPNTFGIPGVEENA 182 (491)
T ss_pred hhhhhhHHHHhhccCCCceEEecccEeecccc--cEEEEeeeccCCCcceeeecccEEEEecc--CCCCCCCCCchhhch
Confidence 566676766666554343 3455567777765 554343332211 3447999999999999 678888999987643
Q ss_pred ccEeecC-------------------CCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcC--------------CccEEEE
Q 013435 186 GPIFHSS-------------------SYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYN--------------ARPSLVV 232 (443)
Q Consensus 186 ~~~~~~~-------------------~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g--------------~~Vt~i~ 232 (443)
...-... ...+++..+--+++|||||++|+|+|.+|++.- -+||++.
T Consensus 183 ~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiE 262 (491)
T KOG2495|consen 183 HFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIE 262 (491)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeec
Confidence 2111110 111111223457999999999999999999641 2456664
Q ss_pred ecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh
Q 013435 233 RDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI 312 (443)
Q Consensus 233 r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (443)
..| ....++.+.+.+.. .+.+
T Consensus 263 A~d------------------~iL~mFdkrl~~ya-----------------------------------------e~~f 283 (491)
T KOG2495|consen 263 AAD------------------HILNMFDKRLVEYA-----------------------------------------ENQF 283 (491)
T ss_pred cch------------------hHHHHHHHHHHHHH-----------------------------------------HHHh
Confidence 443 23333333333322 2233
Q ss_pred cCCCeEEecC--CcEEeCCcEEEcCC----cEEcccEEEEccCCCCCCCCCccCcCcCccCCC--CcCCCCCCCCcCCCc
Q 013435 313 RSGNIKVCRA--IKRLTHHAAEFIDG----SIENYDAIILATGYKSNVPYWLKDTEMFSEKDG--FPRMEFPNGWKGAHG 384 (443)
Q Consensus 313 ~~~~v~v~~~--v~~~~~~~v~~~~g----~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G--~i~~~~~~~~~~~~~ 384 (443)
.+-+|.++.+ |..++++.+..+.+ +++++-+++|+||..|. .+....-...++.| .+.+|...+....+|
T Consensus 284 ~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r--p~~k~lm~~i~e~~rr~L~vDE~LrV~G~~n 361 (491)
T KOG2495|consen 284 VRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR--PVIKDLMKQIDEQGRRGLAVDEWLRVKGVKN 361 (491)
T ss_pred hhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc--hhhhhHhhcCCccCceeeeeeceeeccCcCc
Confidence 3557777777 67777777666544 57899999999999998 44554422223444 677885566778999
Q ss_pred eEEEeeccCC--cc----cchHHHHHHHHHHHHhh
Q 013435 385 LYAVGFNKRG--LL----GASIDARRISEDIEHQW 413 (443)
Q Consensus 385 ifaiGd~~~~--~~----~a~~~a~~~a~~i~~~l 413 (443)
|||+|||+.. .. .|..||..+|+++....
T Consensus 362 vfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~ 396 (491)
T KOG2495|consen 362 VFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMG 396 (491)
T ss_pred eEEeccccccccCccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999932 22 35567777777766544
No 83
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.83 E-value=1.3e-20 Score=182.99 Aligned_cols=314 Identities=18% Similarity=0.194 Sum_probs=193.4
Q ss_pred cccc-cccchhhhhHhhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCC
Q 013435 15 VHDH-FNNKKAAISAARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLP 93 (443)
Q Consensus 15 ~~~~-~~~~~~~~~~~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~ 93 (443)
+.|. +...+....++.+..-.+|.|||+||+|+++|..|.+.|++|+++|+.+..||.-..
T Consensus 103 i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y------------------ 164 (457)
T COG0493 103 IGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY------------------ 164 (457)
T ss_pred HhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe------------------
Confidence 3444 344444444444555589999999999999999999999999999999998885433
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 94 LMPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
..+.|....++.+...++.++.|++++.++++- . .++... ..-.+|.|++|+|. ..|
T Consensus 165 ------GIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG---------~-~it~~~------L~~e~Dav~l~~G~-~~~ 221 (457)
T COG0493 165 ------GIPDFKLPKDILDRRLELLERSGVEFKLNVRVG---------R-DITLEE------LLKEYDAVFLATGA-GKP 221 (457)
T ss_pred ------cCchhhccchHHHHHHHHHHHcCeEEEEcceEC---------C-cCCHHH------HHHhhCEEEEeccc-cCC
Confidence 223444557888888888888898888887662 1 133322 23445999999998 477
Q ss_pred ccCCCCCCCCCcccEeecCCC------------C--CCCCCCCCeEEEEccCCCHHHHHHHHhhcCC-ccEEEEecCCc-
Q 013435 174 VVPYIEGMDGFRGPIFHSSSY------------K--TGELFRDKNVLVVGCGNSGMEVSLDLCNYNA-RPSLVVRDTVH- 237 (443)
Q Consensus 174 ~~p~~~g~~~~~~~~~~~~~~------------~--~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~Vt~i~r~~~~- 237 (443)
+..++||.+. .+ +....++ . ......+++|+|||+|.+++|++......|+ +|+.+.+....
T Consensus 222 ~~l~i~g~d~-~g-v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~ 299 (457)
T COG0493 222 RPLDIPGEDA-KG-VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDD 299 (457)
T ss_pred CCCCCCCcCC-Cc-chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccc
Confidence 7778888653 11 1111111 1 1122245999999999999999999999986 68888644421
Q ss_pred -cccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh--cC
Q 013435 238 -VLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI--RS 314 (443)
Q Consensus 238 -~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 314 (443)
..|.+.. . .....+.. ...+....+ .. .-...+ .+
T Consensus 300 ~~~~~~~~-----~---------~~~~~~~a------~eeg~~~~~--------------------~~--~~~~~~~~e~ 337 (457)
T COG0493 300 ETNEWPTW-----A---------AQLEVRSA------GEEGVERLP--------------------FV--QPKAFIGNEG 337 (457)
T ss_pred cCCccccc-----c---------hhhhhhhh------hhcCCcccc--------------------cC--CceeEeecCC
Confidence 0111100 0 00000000 000000000 00 000111 12
Q ss_pred CCeEEecC--CcEE---eC----CcEEEc-CCcEEcccEEEEccCCCCCCCCCcc-CcCcCccCCCCcCCCCCCCCcCCC
Q 013435 315 GNIKVCRA--IKRL---TH----HAAEFI-DGSIENYDAIILATGYKSNVPYWLK-DTEMFSEKDGFPRMEFPNGWKGAH 383 (443)
Q Consensus 315 ~~v~v~~~--v~~~---~~----~~v~~~-~g~~~~~D~vi~atG~~~~~~~~~~-~~~l~~~~~G~i~~~~~~~~~~~~ 383 (443)
|+|.-... +... .. .-+.+. +...+++|.|+.|+|+.++...... ...+..+..|.+.++....+|+.+
T Consensus 338 GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~ 417 (457)
T COG0493 338 GRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIP 417 (457)
T ss_pred CcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCC
Confidence 33331111 1010 00 112222 2246899999999999998644332 225666788999999444489999
Q ss_pred ceEEEeeccCC---cccchHHHHHHHHHHHHhh
Q 013435 384 GLYAVGFNKRG---LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 384 ~ifaiGd~~~~---~~~a~~~a~~~a~~i~~~l 413 (443)
++|+.||+.++ +..|..+|+.+|+.|..++
T Consensus 418 ~vfa~gD~~~g~~~vv~ai~eGr~aak~i~~~~ 450 (457)
T COG0493 418 GVFAGGDAVRGAALVVWAIAEGREAAKAIDKEL 450 (457)
T ss_pred CeeeCceeccchhhhhhHHhhchHHHHhhhHHH
Confidence 99999999874 5688999999999999554
No 84
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.77 E-value=1.4e-16 Score=150.79 Aligned_cols=366 Identities=17% Similarity=0.203 Sum_probs=196.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC---CCEEEEecCCCCCc-ccccCCCCceeeecCCccccC--CCC------------
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG---VPSLILERANCIAS-LWQLKTYDRLRLHLPKQFCQL--PLM------------ 95 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g---~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~~~--~~~------------ 95 (443)
+++|+|||+|++|+.+|.+|++.- ..|.|+|+.+.+|. .-+...-+...++.+...+.. +..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 478999999999999999999973 24999999998874 444433333334433322211 110
Q ss_pred ---C----CCCCCCCCCCHHHHHHHHHHHHHHc----CCc-c-ccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCE
Q 013435 96 ---P----FPSNFPTYPTKQQFLTYLETYTNHF----GLD-P-VFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQW 162 (443)
Q Consensus 96 ---~----~~~~~~~~~~~~~~~~~l~~~~~~~----~~~-v-~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~ 162 (443)
. ...+-..|+++.-+.+|+.++...+ ... + +..++++++........|.+...++ ....||.
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g-----~~~~ad~ 155 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG-----PSEIADI 155 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC-----CeeeeeE
Confidence 0 1112245788888888887765443 211 2 3355666666663336777888776 8899999
Q ss_pred EEEccCCCCCCccCCCCCCCCCccc-EeecCCCCCC---CCCCCCeEEEEccCCCHHHHHHHHhhcC--CccEEEEecCC
Q 013435 163 LIVATGENAEEVVPYIEGMDGFRGP-IFHSSSYKTG---ELFRDKNVLVVGCGNSGMEVSLDLCNYN--ARPSLVVRDTV 236 (443)
Q Consensus 163 vIiAtG~~~~p~~p~~~g~~~~~~~-~~~~~~~~~~---~~~~~~~v~ViG~G~~~~e~a~~l~~~g--~~Vt~i~r~~~ 236 (443)
+|+|||.. .|..+.. ...+.+. .+....+... ......+|+|+|+|.+.+|....|..+| ..||+++|+.
T Consensus 156 ~Vlatgh~-~~~~~~~--~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG- 231 (474)
T COG4529 156 IVLATGHS-APPADPA--ARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG- 231 (474)
T ss_pred EEEeccCC-CCCcchh--hhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc-
Confidence 99999963 3332221 1111111 1222222111 1123456999999999999999999987 4699999998
Q ss_pred ccccccccCCCccchhhhhh----------hhchhHH-------------HHHHHHHHH--HHHhcCccccCCCCCCCCC
Q 013435 237 HVLPQEMIGRSTFGLSMCLL----------KWFPVRL-------------VDQFLLLMS--WLMLGDTSQFGLIRPKLGP 291 (443)
Q Consensus 237 ~~lp~~~~~~~~~~~~~~~~----------~~~~~~~-------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 291 (443)
++|..+.+.....+..... .++...+ .|.+..+.. |..+...++..+.+... +
T Consensus 232 -l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~-~ 309 (474)
T COG4529 232 -LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLR-P 309 (474)
T ss_pred -cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcc-c
Confidence 4565544432211111111 1110000 011111100 11111111111111111 1
Q ss_pred ccccccCCCcccccccchhhhcCCCeEEecC-CcEEeCC--c--EEEc----C-CcEEcccEEEEccCCCCCCCC----C
Q 013435 292 LELKNVSGKTPVLDVGTLAKIRSGNIKVCRA-IKRLTHH--A--AEFI----D-GSIENYDAIILATGYKSNVPY----W 357 (443)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~~~~~--~--v~~~----~-g~~~~~D~vi~atG~~~~~~~----~ 357 (443)
++..+.-...|.+.....+.+.+|.++++.+ +..++.. + +.+. + .+.+++|.||-|+|..+...- +
T Consensus 310 ~~dvHr~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~ 389 (474)
T COG4529 310 IWDVHRFRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPF 389 (474)
T ss_pred HHHHHHhhhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHH
Confidence 1111111223455666677788899998887 5444432 2 3332 1 246899999999999887411 1
Q ss_pred ccC---cCcCc-cC-CCCcCCCCCCC-----CcCCCceEEEeeccCCcc---cc----hHHHHHHHHHHH
Q 013435 358 LKD---TEMFS-EK-DGFPRMEFPNG-----WKGAHGLYAVGFNKRGLL---GA----SIDARRISEDIE 410 (443)
Q Consensus 358 ~~~---~~l~~-~~-~G~i~~~~~~~-----~~~~~~ifaiGd~~~~~~---~a----~~~a~~~a~~i~ 410 (443)
+.. .++.. |. ..-+.++.+.. .+...++|++|..+.+.. .+ ..++..+|..++
T Consensus 390 L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 390 LRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred HHHHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 111 12221 11 11123332222 234689999999988753 22 335555555554
No 85
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=163.39 Aligned_cols=277 Identities=19% Similarity=0.200 Sum_probs=170.7
Q ss_pred eEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCC-CCCCCHHHHHHH
Q 013435 37 PVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNF-PTYPTKQQFLTY 113 (443)
Q Consensus 37 vvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 113 (443)
++|||+|++|+++|..+.+. +.+++++.......... .+.+... ........+...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR---------------------CPLSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCC---------------------CccchHHhcccCCHHHhccc
Confidence 58999999999999998886 45888777765332100 0000000 000011111111
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSS 193 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~ 193 (443)
.. +..+.++.++.+++|+.++... .. +.+.+ ..+.||++|+||| +.+..+. +.. +. ..+....
T Consensus 60 ~~-~~~~~~i~~~~~~~v~~id~~~--~~--v~~~~------g~~~yd~LvlatG--a~~~~~~--~~~-~~-~~~~~~~ 122 (415)
T COG0446 60 PR-FNRATGIDVRTGTEVTSIDPEN--KV--VLLDD------GEIEYDYLVLATG--ARPRPPP--ISD-WE-GVVTLRL 122 (415)
T ss_pred ch-hHHhhCCEEeeCCEEEEecCCC--CE--EEECC------CcccccEEEEcCC--CcccCCC--ccc-cC-ceEEECC
Confidence 11 2245578888999999998766 33 56655 3899999999999 5555544 111 11 1111111
Q ss_pred CCCCC-----CCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHH
Q 013435 194 YKTGE-----LFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFL 268 (443)
Q Consensus 194 ~~~~~-----~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (443)
..+.. ....++++|+|+|..|+++|..+.+.|.+|+++...+ +++++... ....+
T Consensus 123 ~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~----------------~~~~~--- 182 (415)
T COG0446 123 REDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLD----------------PEVAE--- 182 (415)
T ss_pred HHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhh----------------HHHHH---
Confidence 11111 1115799999999999999999999999999999888 33332210 01111
Q ss_pred HHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc-------EEEcCCcEE
Q 013435 269 LLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA-------AEFIDGSIE 339 (443)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~-------v~~~~g~~~ 339 (443)
.+.+.+...+|+++.+ +.++...+ +...++..+
T Consensus 183 --------------------------------------~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 224 (415)
T COG0446 183 --------------------------------------ELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEI 224 (415)
T ss_pred --------------------------------------HHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEE
Confidence 1123333444665554 45555432 567788899
Q ss_pred cccEEEEccCCCCCCCCCccCcC-cCccCCCCcCCCCCCCCcC-CCceEEEeeccCC---c---c-------cchHHHHH
Q 013435 340 NYDAIILATGYKSNVPYWLKDTE-MFSEKDGFPRMEFPNGWKG-AHGLYAVGFNKRG---L---L-------GASIDARR 404 (443)
Q Consensus 340 ~~D~vi~atG~~~~~~~~~~~~~-l~~~~~G~i~~~~~~~~~~-~~~ifaiGd~~~~---~---~-------~a~~~a~~ 404 (443)
++|.++.++|.+|++ .+..... ......|++.+| ...+++ .+++|++||++.. . . .+..+++.
T Consensus 225 ~~d~~~~~~g~~p~~-~l~~~~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i 302 (415)
T COG0446 225 KADLVIIGPGERPNV-VLANDALPGLALAGGAVLVD-ERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRI 302 (415)
T ss_pred EeeEEEEeecccccH-HHHhhCccceeccCCCEEEc-cccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHH
Confidence 999999999999995 4444443 133477889999 677776 9999999997632 1 0 23455666
Q ss_pred HHHHHHH
Q 013435 405 ISEDIEH 411 (443)
Q Consensus 405 ~a~~i~~ 411 (443)
++.++..
T Consensus 303 ~~~~~~~ 309 (415)
T COG0446 303 AAENIAG 309 (415)
T ss_pred HHHHhcc
Confidence 6666654
No 86
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.74 E-value=2.3e-17 Score=169.84 Aligned_cols=169 Identities=13% Similarity=0.197 Sum_probs=90.4
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccc--c-----CCCCceeee-cCCccccCCCCCCCCCCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQ--L-----KTYDRLRLH-LPKQFCQLPLMPFPSNFP 102 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~--~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 102 (443)
....++|+|||+||||+++|+.|++.|++|+++|+.+..|+... . ..|..+... .+...-.+..+.. +
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGI----p 455 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGI----T 455 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCc----c
Confidence 35678999999999999999999999999999999764433211 0 000000000 0000000010111 1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccc--ceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCC
Q 013435 103 TYPTKQQFLTYLETYTNHFGLDPVF--NTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEG 180 (443)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~v~~--~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g 180 (443)
+.-.....+.++...+ .+..+.+ +..+ . . . ++.++- ....||.|++|||+ ..|+.+++||
T Consensus 456 -~R~~k~~l~~i~~il~-~g~~v~~~~gv~l---G--~---d--it~edl-----~~~gyDAV~IATGA-~kpr~L~IPG 517 (1028)
T PRK06567 456 -VRWDKNNLDILRLILE-RNNNFKYYDGVAL---D--F---N--ITKEQA-----FDLGFDHIAFCIGA-GQPKVLDIEN 517 (1028)
T ss_pred -ccchHHHHHHHHHHHh-cCCceEEECCeEE---C--c---c--CCHHHH-----hhcCCCEEEEeCCC-CCCCCCCCCC
Confidence 1111222333333222 2333333 4322 0 0 0 221111 34679999999996 2677888998
Q ss_pred CCCCcccEeecCCCCC-------------CCCCCCCeEEEEccCCCHHHHHHHHhh
Q 013435 181 MDGFRGPIFHSSSYKT-------------GELFRDKNVLVVGCGNSGMEVSLDLCN 223 (443)
Q Consensus 181 ~~~~~~~~~~~~~~~~-------------~~~~~~~~v~ViG~G~~~~e~a~~l~~ 223 (443)
.+. .+ ++...++.. .....+++|+|||||++|+|+|.....
T Consensus 518 eda-~G-V~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr 571 (1028)
T PRK06567 518 FEA-KG-VKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLY 571 (1028)
T ss_pred ccC-CC-eEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHh
Confidence 664 11 222222100 001135789999999999999996654
No 87
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.74 E-value=1.7e-16 Score=153.13 Aligned_cols=163 Identities=19% Similarity=0.173 Sum_probs=98.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHH-HcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLT-EKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~-~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...+|+||||||+|+.+|.+|+ +.|++|+|+|+.+.+||.++.... +..+.-..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa-----------------------Pdh~~~k~v~ 94 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA-----------------------PDHIHVKNTY 94 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC-----------------------CCCccHHHHH
Confidence 4567999999999999999876 569999999999999987765311 1123345555
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC------------C--
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP------------Y-- 177 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p------------~-- 177 (443)
..+...+...++++..+..| .. .++.++ ..-.||.||+|+|+. ...+| .
T Consensus 95 ~~f~~~~~~~~v~f~gnv~V-----G~-----Dvt~ee------L~~~YDAVIlAtGA~-~l~ipi~~~~~~~~~~GGe~ 157 (506)
T PTZ00188 95 KTFDPVFLSPNYRFFGNVHV-----GV-----DLKMEE------LRNHYNCVIFCCGAS-EVSIPIGQQDEDKAVSGGET 157 (506)
T ss_pred HHHHHHHhhCCeEEEeeeEe-----cC-----ccCHHH------HHhcCCEEEEEcCCC-CCCCCcccccceeeeccccc
Confidence 55555444445444333222 11 022222 233799999999974 22222 1
Q ss_pred ----CCCCCCCcccEeecCCCCCC----CC------C-CCCeEEEEccCCCHHHHHHHHh--------------------
Q 013435 178 ----IEGMDGFRGPIFHSSSYKTG----EL------F-RDKNVLVVGCGNSGMEVSLDLC-------------------- 222 (443)
Q Consensus 178 ----~~g~~~~~~~~~~~~~~~~~----~~------~-~~~~v~ViG~G~~~~e~a~~l~-------------------- 222 (443)
++|.-.....+.+.....+. .. . ..++++|||.|++|+|+|+.|+
T Consensus 158 ~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~ 237 (506)
T PTZ00188 158 NPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIK 237 (506)
T ss_pred cccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHH
Confidence 11211111122222111110 01 1 4578999999999999999854
Q ss_pred hcC-CccEEEEecC
Q 013435 223 NYN-ARPSLVVRDT 235 (443)
Q Consensus 223 ~~g-~~Vt~i~r~~ 235 (443)
+.. .+|+++.|+.
T Consensus 238 ~s~v~~V~ivgRRG 251 (506)
T PTZ00188 238 RHNIKHIYIVGRRG 251 (506)
T ss_pred hCCCcEEEEEEecC
Confidence 222 4699999998
No 88
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.73 E-value=1.7e-16 Score=143.96 Aligned_cols=150 Identities=21% Similarity=0.263 Sum_probs=99.7
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQ 108 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (443)
+...+.|+|||+||||+.+|.+|+++ +.+|.|+|+.+.+.|..+... .|..|.-.
T Consensus 17 qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV-----------------------APDHpEvK 73 (468)
T KOG1800|consen 17 QSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV-----------------------APDHPEVK 73 (468)
T ss_pred ccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc-----------------------CCCCcchh
Confidence 34445899999999999999999995 689999999998876544321 12233344
Q ss_pred HHHHHHHHHHHHcCCccccceeE-EEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCccc
Q 013435 109 QFLTYLETYTNHFGLDPVFNTTV-VNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGP 187 (443)
Q Consensus 109 ~~~~~l~~~~~~~~~~v~~~~~V-~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~ 187 (443)
....-+...+++....+.-|..| .. ++..+ -+-.||.||+|.|+ ..++..++||.+. .+
T Consensus 74 nvintFt~~aE~~rfsf~gNv~vG~d-----------vsl~e------L~~~ydavvLaYGa-~~dR~L~IPGe~l-~~- 133 (468)
T KOG1800|consen 74 NVINTFTKTAEHERFSFFGNVKVGRD-----------VSLKE------LTDNYDAVVLAYGA-DGDRRLDIPGEEL-SG- 133 (468)
T ss_pred hHHHHHHHHhhccceEEEecceeccc-----------ccHHH------HhhcccEEEEEecC-CCCcccCCCCccc-cc-
Confidence 55555666666655444444333 11 22222 45678999999998 4667789999762 11
Q ss_pred Eee-------cCCCC----CCCCCCCCeEEEEccCCCHHHHHHHHhh
Q 013435 188 IFH-------SSSYK----TGELFRDKNVLVVGCGNSGMEVSLDLCN 223 (443)
Q Consensus 188 ~~~-------~~~~~----~~~~~~~~~v~ViG~G~~~~e~a~~l~~ 223 (443)
++. +...+ ...++.+.+|+|||-|++|+|+|+.|..
T Consensus 134 V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 134 VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhC
Confidence 111 11111 1234558899999999999999999873
No 89
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.72 E-value=1.3e-17 Score=152.52 Aligned_cols=313 Identities=17% Similarity=0.182 Sum_probs=190.5
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCC--------cccccCCCCceeeecCCccccCCCCC---CC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIA--------SLWQLKTYDRLRLHLPKQFCQLPLMP---FP 98 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~g--------g~w~~~~~~~~~~~~~~~~~~~~~~~---~~ 98 (443)
....-.+|||+|.+..+++...... +.++.+|..++.+. ..|........ ....+-++.+.. |-
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~---k~lrfkqwsGkeRsiff 252 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSA---KKLRFKQWSGKERSIFF 252 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChh---hheeecccCCccceeEe
Confidence 3444589999999988888766554 56888988876542 01211000000 000000111100 00
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCC-
Q 013435 99 SNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPY- 177 (443)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~- 177 (443)
+....|.+.+++-. +..-|+-+..+..|+.|+.++ .. |.+++| .+|.||.++|||| .+|...+
T Consensus 253 epd~FfvspeDLp~-----~~nGGvAvl~G~kvvkid~~d--~~--V~LnDG-----~~I~YdkcLIATG--~~Pk~l~~ 316 (659)
T KOG1346|consen 253 EPDGFFVSPEDLPK-----AVNGGVAVLRGRKVVKIDEED--KK--VILNDG-----TTIGYDKCLIATG--VRPKKLQV 316 (659)
T ss_pred cCCcceeChhHCcc-----cccCceEEEeccceEEeeccc--Ce--EEecCC-----cEeehhheeeecC--cCcccchh
Confidence 00112334444332 344577788888999998876 43 888887 8999999999999 4555332
Q ss_pred CC--CCCCC-cccEeecCCCCCC-C--CCCCCeEEEEccCCCHHHHHHHHhhc----CCccEEEEecCCccccccccCCC
Q 013435 178 IE--GMDGF-RGPIFHSSSYKTG-E--LFRDKNVLVVGCGNSGMEVSLDLCNY----NARPSLVVRDTVHVLPQEMIGRS 247 (443)
Q Consensus 178 ~~--g~~~~-~~~~~~~~~~~~~-~--~~~~~~v~ViG~G~~~~e~a~~l~~~----g~~Vt~i~r~~~~~lp~~~~~~~ 247 (443)
+. +.+.. +-..++....... . ....++|.|||+|..|.|+|-.|.+. |-+|+-+. +...
T Consensus 317 ~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF-------~Ek~---- 385 (659)
T KOG1346|consen 317 FEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVF-------EEKY---- 385 (659)
T ss_pred hhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEee-------cccC----
Confidence 21 11110 1122333211111 1 12347899999999999999999875 33444332 2111
Q ss_pred ccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcE
Q 013435 248 TFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKR 325 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~ 325 (443)
.+...++.++..+ ..+.+++++|.|+++ |..
T Consensus 386 --nm~kiLPeyls~w---------------------------------------------t~ekir~~GV~V~pna~v~s 418 (659)
T KOG1346|consen 386 --NMEKILPEYLSQW---------------------------------------------TIEKIRKGGVDVRPNAKVES 418 (659)
T ss_pred --ChhhhhHHHHHHH---------------------------------------------HHHHHHhcCceeccchhhhh
Confidence 2222233333222 245566788888877 544
Q ss_pred EeC--Cc--EEEcCCcEEcccEEEEccCCCCCCCCCccCcCcCccC-CCCcCCCCCCCCcCCCceEEEeeccCC------
Q 013435 326 LTH--HA--AEFIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEK-DGFPRMEFPNGWKGAHGLYAVGFNKRG------ 394 (443)
Q Consensus 326 ~~~--~~--v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~-~G~i~~~~~~~~~~~~~ifaiGd~~~~------ 394 (443)
+.. .+ +.++||.++..|+|+.|+|..||+ ++....+|+.|. -|-..+| .......|||++||++-+
T Consensus 419 v~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~-ela~~sgLeiD~~lGGfrvn--aeL~ar~NvwvAGdaacF~D~~LG 495 (659)
T KOG1346|consen 419 VRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS-ELAEASGLEIDEKLGGFRVN--AELKARENVWVAGDAACFEDGVLG 495 (659)
T ss_pred hhhhccceEEEecCCCeeeeeeEEEEecCCCch-hhcccccceeecccCcEEee--heeecccceeeecchhhhhccccc
Confidence 433 23 567899999999999999999998 788888888874 3667777 333456899999997622
Q ss_pred ------cccchHHHHHHHHHHHHhhHHHHHhHhhhh
Q 013435 395 ------LLGASIDARRISEDIEHQWNSEAKKLMAFS 424 (443)
Q Consensus 395 ------~~~a~~~a~~~a~~i~~~l~~~~~~~~~~~ 424 (443)
...|...|+.+++|+++..+...++.+.|+
T Consensus 496 rRRVehhdhavvSGRLAGENMtgAakpy~hqsmFWs 531 (659)
T KOG1346|consen 496 RRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWS 531 (659)
T ss_pred ceeccccccceeeceecccccccccCCccccceeee
Confidence 125788999999999988776655555555
No 90
>PRK09897 hypothetical protein; Provisional
Probab=99.70 E-value=2.5e-15 Score=149.37 Aligned_cols=189 Identities=15% Similarity=0.154 Sum_probs=115.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCC-cc-cccCC-CCceeeecCCc--------cccCCCC-----
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIA-SL-WQLKT-YDRLRLHLPKQ--------FCQLPLM----- 95 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~g-g~-w~~~~-~~~~~~~~~~~--------~~~~~~~----- 95 (443)
|++|+|||||++|+++|.+|.+.+ .+|+|+|+...+| |. |.... ...+.++.... +..+...
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 468999999999999999999874 5999999988777 33 33211 11111111100 0000000
Q ss_pred ----CC---CCCCCCCCCHHHHHHHHHHHHH-------HcC--CccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEE
Q 013435 96 ----PF---PSNFPTYPTKQQFLTYLETYTN-------HFG--LDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYL 159 (443)
Q Consensus 96 ----~~---~~~~~~~~~~~~~~~~l~~~~~-------~~~--~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~ 159 (443)
.. ......|+++..+.+|+++... ..| +.++.+++|++++..+ +.|.|++.++ ...+.
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~g----g~~i~ 154 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQD----LPSET 154 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCC----CeEEE
Confidence 00 0001246666666666655332 233 4556688899998877 6787877542 15799
Q ss_pred eCEEEEccCCCCCCccCCCCCCCCCcccEeecCCCCC--CCCCCCCeEEEEccCCCHHHHHHHHhhcC------------
Q 013435 160 CQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKT--GELFRDKNVLVVGCGNSGMEVSLDLCNYN------------ 225 (443)
Q Consensus 160 a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~ViG~G~~~~e~a~~l~~~g------------ 225 (443)
||+||+|||.. .|..+ ++...| ....+.. .....+.+|+|+|.|.+++|++..|...|
T Consensus 155 aD~VVLAtGh~-~p~~~--~~~~~y-----i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~ 226 (534)
T PRK09897 155 FDLAVIATGHV-WPDEE--EATRTY-----FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVV 226 (534)
T ss_pred cCEEEECCCCC-CCCCC--hhhccc-----cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcce
Confidence 99999999963 22211 221111 1111111 11224689999999999999999998552
Q ss_pred ---------CccEEEEecCC
Q 013435 226 ---------ARPSLVVRDTV 236 (443)
Q Consensus 226 ---------~~Vt~i~r~~~ 236 (443)
.++++++|+..
T Consensus 227 l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 227 FHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred eeecCCCCCceEEEEeCCCC
Confidence 36899999984
No 91
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.62 E-value=6.6e-16 Score=136.58 Aligned_cols=121 Identities=24% Similarity=0.347 Sum_probs=74.9
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH---
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT--- 112 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 112 (443)
||+|||||++|+++|..|++.+.+++++|+.+..... ....+...... . ......+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~--~~~~~~~~~~~--------------~---~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN--SGCIPSPLLVE--------------I---APHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH--HSHHHHHHHHH--------------H---HHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc--ccccccccccc--------------c---cccccccccccc
Confidence 6999999999999999999999999999886632110 00000000000 0 000011110
Q ss_pred -HHHHHHHHcCCccccceeEEEEEEeCCCCeE-----EEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCC
Q 013435 113 -YLETYTNHFGLDPVFNTTVVNAEYDHLSRLW-----RVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGM 181 (443)
Q Consensus 113 -~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-----~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~ 181 (443)
.+.+.....++++..+.+|.+++... ..+ .+.... .++..++.||+||+||| +.|..|.+||.
T Consensus 62 ~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~~--~~~~~~~~~d~lviAtG--~~~~~~~i~g~ 130 (201)
T PF07992_consen 62 FKLVDQLKNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVVE--TGDGREIKYDYLVIATG--SRPRTPNIPGE 130 (201)
T ss_dssp GHHHHHHHHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEEE--TTTEEEEEEEEEEEEST--EEEEEESSTTT
T ss_pred cccccccccceEEEeeccccccccccc--cccccCcccceeec--cCCceEecCCeeeecCc--cccceeecCCC
Confidence 22333355677777888999998876 432 222211 11337999999999999 67888888885
No 92
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.55 E-value=3.4e-14 Score=122.86 Aligned_cols=292 Identities=20% Similarity=0.272 Sum_probs=150.3
Q ss_pred eEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 013435 37 PVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTYL 114 (443)
Q Consensus 37 vvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (443)
.+|||||+||.+||.+|+.+ ..+++++...+.+-. ...-..+.+|+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vks--------------------------------vtn~~~i~~yl 49 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS--------------------------------VTNYQKIGQYL 49 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH--------------------------------HhhHHHHHHHH
Confidence 68999999999999999987 468898877653210 01123344444
Q ss_pred HHH------HHHcCCcc--ccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcc
Q 013435 115 ETY------TNHFGLDP--VFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRG 186 (443)
Q Consensus 115 ~~~------~~~~~~~v--~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~ 186 (443)
..+ +..++-.+ ..+. |..++.++ .. +.+.++ ..+.|++|++|+| ++|.+. .+|.+.
T Consensus 50 ekfdv~eq~~~elg~~f~~~~~~-v~~~~s~e--hc--i~t~~g-----~~~ky~kKOG~tg--~kPklq-~E~~n~--- 113 (334)
T KOG2755|consen 50 EKFDVKEQNCHELGPDFRRFLND-VVTWDSSE--HC--IHTQNG-----EKLKYFKLCLCTG--YKPKLQ-VEGINP--- 113 (334)
T ss_pred HhcCccccchhhhcccHHHHHHh-hhhhcccc--ce--EEecCC-----ceeeEEEEEEecC--CCccee-ecCCCc---
Confidence 332 11112111 1122 44444333 33 777776 7899999999999 566542 333232
Q ss_pred cEeecCCCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhc--
Q 013435 187 PIFHSSSYKT-----GELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWF-- 259 (443)
Q Consensus 187 ~~~~~~~~~~-----~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~-- 259 (443)
.++..-+... ....+.|.|.|+|-|-+++|.+-++... +|+|....+ ++-.....+ ....++.-.+
T Consensus 114 ~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~-~IsaTFfdp----Gaaef~~i~l~a 186 (334)
T KOG2755|consen 114 KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDE-GISATFFDP----GAAEFYDINLRA 186 (334)
T ss_pred eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecch-hhhhcccCc----cHHHHhHhhhhc
Confidence 2222211111 1124679999999999999999888765 699988776 221111111 1111111111
Q ss_pred --hhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccC--CCcccccccchhhhcCCCeEEecCCcEEeCC--cEEE
Q 013435 260 --PVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVS--GKTPVLDVGTLAKIRSGNIKVCRAIKRLTHH--AAEF 333 (443)
Q Consensus 260 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~--~v~~ 333 (443)
++...+ ...+.............+ .|.+++-+-.... +... ..+..+..++..-+.+.. ..+ .+..
T Consensus 187 ~~s~~~ia-iKh~q~iea~pk~~~n~v-g~algpDw~s~~dl~g~~e-seer~l~~l~~~~~~~~d-----~~d~~sv~~ 258 (334)
T KOG2755|consen 187 DRSTRIIA-IKHFQYIEAFPKCEENNV-GPALGPDWHSQIDLQGISE-SENRSLTYLRNCVITSTD-----TSDNLSVHY 258 (334)
T ss_pred ccccchhh-hhhhhhhhhcCcccccCc-ccccCcchhhhcccccchh-hhhhhhHHhhhheeeecc-----chhhccccc
Confidence 000000 000000000111111111 1223222221111 0001 112222222222111110 111 1111
Q ss_pred c---C--CcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC
Q 013435 334 I---D--GSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR 393 (443)
Q Consensus 334 ~---~--g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~ 393 (443)
. . ...+.||.+++|||..||+. +.-...+...++|.+.++ +.+.++.|++|++||.+.
T Consensus 259 ~~~ek~~~~qlt~d~ivSatgvtpn~e-~~~~~~lq~~edggikvd-d~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 259 MDKEKMADNQLTCDFIVSATGVTPNSE-WAMNKMLQITEDGGIKVD-DAMETSLPDVFAAGDVCT 321 (334)
T ss_pred ccccccccceeeeeEEEeccccCcCce-EEecChhhhccccCeeeh-hhccccccceeeecceec
Confidence 1 1 13577999999999999985 544443333578889999 788999999999999765
No 93
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.54 E-value=4e-13 Score=125.98 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=57.5
Q ss_pred cEEcccEEEEccCCCCCCC--CCccCcCcCccCCCCcCCCCCCC---CcCCCceEEEeeccCC--cccchHHHHHHHHHH
Q 013435 337 SIENYDAIILATGYKSNVP--YWLKDTEMFSEKDGFPRMEFPNG---WKGAHGLYAVGFNKRG--LLGASIDARRISEDI 409 (443)
Q Consensus 337 ~~~~~D~vi~atG~~~~~~--~~~~~~~l~~~~~G~i~~~~~~~---~~~~~~ifaiGd~~~~--~~~a~~~a~~~a~~i 409 (443)
.++++|+|++++|..|... .+-.-++|..+++||+...++.. .++.+|||.+|-+..+ +..+..||..+|...
T Consensus 461 ~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~siaqa~aAA~kA 540 (622)
T COG1148 461 KEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIADSIAQAKAAAAKA 540 (622)
T ss_pred eecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCccHHHHHHHhHHHHHHH
Confidence 3689999999999999642 13334488888999998886544 4578999999999876 335566777777666
Q ss_pred HHhhH
Q 013435 410 EHQWN 414 (443)
Q Consensus 410 ~~~l~ 414 (443)
+..+.
T Consensus 541 ~~~l~ 545 (622)
T COG1148 541 AQLLG 545 (622)
T ss_pred HHHhh
Confidence 66553
No 94
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.47 E-value=3.8e-13 Score=124.59 Aligned_cols=135 Identities=20% Similarity=0.306 Sum_probs=96.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc--------cccc---CCCCceeeecC---Ccc----ccCC-
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS--------LWQL---KTYDRLRLHLP---KQF----CQLP- 93 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg--------~w~~---~~~~~~~~~~~---~~~----~~~~- 93 (443)
+.+||+||||||+|++||..+.+.|.+|+|+|+.+.+|- .+.- ..+..+..+.| ... ..|.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 468999999999999999999999999999999997652 1111 01111111122 000 0000
Q ss_pred ----------CCCCCC-----CCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEE
Q 013435 94 ----------LMPFPS-----NFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVY 158 (443)
Q Consensus 94 ----------~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i 158 (443)
...+.+ -+|.-.....+.+.+...+++.+++++.+++|.+++.++ ..|.+.+.++ .++
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g-----~~i 154 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSG-----ETV 154 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCC-----CEE
Confidence 111111 122223578899999999999999999999999999987 7888999985 589
Q ss_pred EeCEEEEccCCCCCCc
Q 013435 159 LCQWLIVATGENAEEV 174 (443)
Q Consensus 159 ~a~~vIiAtG~~~~p~ 174 (443)
+||.+|+|||..|.|.
T Consensus 155 ~~d~lilAtGG~S~P~ 170 (408)
T COG2081 155 KCDSLILATGGKSWPK 170 (408)
T ss_pred EccEEEEecCCcCCCC
Confidence 9999999999877763
No 95
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.38 E-value=2.6e-12 Score=124.18 Aligned_cols=134 Identities=26% Similarity=0.352 Sum_probs=76.1
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc--------cccc-C---CCCceeee---cCCcc----ccCC--
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS--------LWQL-K---TYDRLRLH---LPKQF----CQLP-- 93 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg--------~w~~-~---~~~~~~~~---~~~~~----~~~~-- 93 (443)
|||+|||||++|++||..|++.|.+|+|+|+++.+|- .+.- + ....+... .+... ..+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 7999999999999999999999999999999987752 1110 0 00011110 00000 0000
Q ss_pred ---------CCCC---CCC--CCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEE
Q 013435 94 ---------LMPF---PSN--FPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYL 159 (443)
Q Consensus 94 ---------~~~~---~~~--~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~ 159 (443)
..+. ++. +|.--...++.+.+...+++.+++++++++|.+++..++ ..|.|++++. ..+.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~f~v~~~~~-----~~~~ 154 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-GVFGVKTKNG-----GEYE 154 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-EEEEEEETTT-----EEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-ceeEeeccCc-----cccc
Confidence 0010 000 122225688889999999999999999999999998773 4488988433 8999
Q ss_pred eCEEEEccCCCCCCc
Q 013435 160 CQWLIVATGENAEEV 174 (443)
Q Consensus 160 a~~vIiAtG~~~~p~ 174 (443)
||.||+|||..+.|.
T Consensus 155 a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 155 ADAVILATGGKSYPK 169 (409)
T ss_dssp ESEEEE----SSSGG
T ss_pred CCEEEEecCCCCccc
Confidence 999999999766543
No 96
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.28 E-value=5.8e-11 Score=100.00 Aligned_cols=125 Identities=22% Similarity=0.321 Sum_probs=90.4
Q ss_pred EEECCCHHHHHHHHHHHHc-----CCCEEEEecCCCC-CcccccCCCCceeeecCCccccCCCC----CC----------
Q 013435 38 VIVGAGPSGLATAACLTEK-----GVPSLILERANCI-ASLWQLKTYDRLRLHLPKQFCQLPLM----PF---------- 97 (443)
Q Consensus 38 vIIG~G~aGl~~A~~l~~~-----g~~v~iie~~~~~-gg~w~~~~~~~~~~~~~~~~~~~~~~----~~---------- 97 (443)
+|||+|++|++++.+|.++ ..+|+|||+.+.. |+.|.....+...++.+...+..... .+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999998 3599999996653 45777655555666665554332111 00
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHc------CCcc-ccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEcc
Q 013435 98 ---PSNFPTYPTKQQFLTYLETYTNHF------GLDP-VFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVAT 167 (443)
Q Consensus 98 ---~~~~~~~~~~~~~~~~l~~~~~~~------~~~v-~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAt 167 (443)
......|+++..+.+|+.+..+.. ++++ +...+|++|+..+ +.|.|.+.++ ..+.||.||+||
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~--~~~~v~~~~g-----~~~~~d~VvLa~ 153 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD--DGYRVVTADG-----QSIRADAVVLAT 153 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC--CcEEEEECCC-----CEEEeCEEEECC
Confidence 112246889999999988765542 4444 3567899999988 6688888876 789999999999
Q ss_pred CC
Q 013435 168 GE 169 (443)
Q Consensus 168 G~ 169 (443)
|.
T Consensus 154 Gh 155 (156)
T PF13454_consen 154 GH 155 (156)
T ss_pred CC
Confidence 94
No 97
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.26 E-value=1.3e-10 Score=112.79 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=32.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+.|||+|||+|++|+++|..|++.|.+++++|+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 46899999999999999999999999999999864
No 98
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.24 E-value=8.1e-11 Score=110.46 Aligned_cols=131 Identities=24% Similarity=0.281 Sum_probs=86.4
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCC-C----ceee------ecCC--ccccCC----CCCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTY-D----RLRL------HLPK--QFCQLP----LMPF 97 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~-~----~~~~------~~~~--~~~~~~----~~~~ 97 (443)
|||+|||||++|+++|..|++.|.+|+|+|+....+..++.... + .+.. .... .+.... ....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 69999999999999999999999999999998765543321100 0 0000 0000 000000 0011
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 98 PSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
+.......++..+.+.+.+.+.+.+++++++++|+++...+ +.+.+.... +..++++|+||+|+|.++
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~~~~~~----~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVVVIVRG----GEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEEEEEcC----ccEEEEeCEEEECCCcch
Confidence 11111224678888999998888899999999999998876 454454432 116899999999999765
No 99
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.23 E-value=4.5e-10 Score=100.32 Aligned_cols=74 Identities=9% Similarity=0.147 Sum_probs=52.8
Q ss_pred EEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCC-CCCcCCCceEEEeeccCCcc--c---chHHHHHHHHHHHH
Q 013435 338 IENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFP-NGWKGAHGLYAVGFNKRGLL--G---ASIDARRISEDIEH 411 (443)
Q Consensus 338 ~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~-~~~~~~~~ifaiGd~~~~~~--~---a~~~a~~~a~~i~~ 411 (443)
+++++++-.....+++ +++..+.+ .|..||+.||.. .+.+..||||+||||.+... + ...|...+-+++..
T Consensus 282 ei~yslLHv~Ppms~p--e~l~~s~~-adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~ 358 (446)
T KOG3851|consen 282 EIEYSLLHVTPPMSTP--EVLANSDL-ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQ 358 (446)
T ss_pred EEeeeeeeccCCCCCh--hhhhcCcc-cCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHH
Confidence 5788988888877777 67777775 468999999954 45568899999999987633 1 12344555566665
Q ss_pred hhH
Q 013435 412 QWN 414 (443)
Q Consensus 412 ~l~ 414 (443)
.++
T Consensus 359 ~m~ 361 (446)
T KOG3851|consen 359 VMQ 361 (446)
T ss_pred Hhc
Confidence 553
No 100
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.22 E-value=2e-10 Score=112.19 Aligned_cols=135 Identities=19% Similarity=0.269 Sum_probs=85.5
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecC-CC---CCcccccC--------------CCCceeeecCCccccCCCCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERA-NC---IASLWQLK--------------TYDRLRLHLPKQFCQLPLMP 96 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~-~~---~gg~w~~~--------------~~~~~~~~~~~~~~~~~~~~ 96 (443)
|||+||||||+|+++|+.|++.|++|+|+|+. .. .|+..... .+.+..+..+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 79999999999999999999999999999997 21 12111000 01111111111100000001
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecC---CCcEEEEEeCEEEEccCCCCC
Q 013435 97 FPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGL---KQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~---~~~~~~i~a~~vIiAtG~~~~ 172 (443)
....+.....+..+.+++.+.+.+.|++++.. .|+++...+ +.+.|+..++. .++..+++|++||.|+|.+|.
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR--DGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC--CeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 01111123678899999999888889888654 588887766 66667765421 223368999999999997664
No 101
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.21 E-value=1.8e-10 Score=104.98 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=88.7
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc-ccccC-CCCceeeecC-Ccc---ccCCCCCCCCCCCCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS-LWQLK-TYDRLRLHLP-KQF---CQLPLMPFPSNFPTY 104 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~-~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~ 104 (443)
....+||+||||||+|+++|+.|++.|++|+|+|+...+|| .|... .++...+... ... ..+++...... ...
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g-~~~ 100 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDG-LYV 100 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCc-cee
Confidence 35568999999999999999999999999999999887765 44321 1111111000 000 01111111111 012
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEee------cCCCcEEEEEeCEEEEccCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQ------GLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~------~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
..+.++...+.+.+.+.+++++.++.|+++..+++...+-+.+.. +...+...++|+.||+|||.++
T Consensus 101 vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 101 ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 356788888888888899999999999998875531222222221 1111336899999999999754
No 102
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.19 E-value=3.4e-10 Score=102.86 Aligned_cols=139 Identities=20% Similarity=0.253 Sum_probs=89.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-cccccCC-CCceeeecC-CccccCCCCCCCCCCCC--CCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIA-SLWQLKT-YDRLRLHLP-KQFCQLPLMPFPSNFPT--YPT 106 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g-g~w~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~ 106 (443)
...+||+||||||+|+++|+.|++.|.+++|+|+...+| +.|.... ++...+..+ ..+......++...-.+ ...
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~ 98 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVAD 98 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEee
Confidence 457899999999999999999999999999999998876 4664321 221111110 00111111121111111 135
Q ss_pred HHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCe-EEEEEee------cCCCcEEEEEeCEEEEccCCC
Q 013435 107 KQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRL-WRVKTQQ------GLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~-~~v~~~~------~~~~~~~~i~a~~vIiAtG~~ 170 (443)
+.++...+.+.+.+.+++++.++.|.++...++... .-|.++. +...++..++|+.||.|||..
T Consensus 99 ~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 99 SAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 677888888888889999999999999887663111 1233321 111124789999999999963
No 103
>PLN02463 lycopene beta cyclase
Probab=99.16 E-value=2.8e-10 Score=111.80 Aligned_cols=134 Identities=17% Similarity=0.177 Sum_probs=86.9
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC-----CcccccCCCCceee------ecCCccccCCC-C-C
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI-----ASLWQLKTYDRLRL------HLPKQFCQLPL-M-P 96 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~-----gg~w~~~~~~~~~~------~~~~~~~~~~~-~-~ 96 (443)
.+...|||+||||||+|+++|..|++.|++|+++|+.+.. .+.|... ...+.+ ..+.....+.. . .
T Consensus 24 ~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~-l~~lgl~~~l~~~w~~~~v~~~~~~~~ 102 (447)
T PLN02463 24 SKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE-FEALGLLDCLDTTWPGAVVYIDDGKKK 102 (447)
T ss_pred ccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH-HHHCCcHHHHHhhCCCcEEEEeCCCCc
Confidence 4566699999999999999999999999999999996532 1222210 000000 00000000000 0 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 97 FPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.....-....+..+.+.+.+.+.+.+++++ ..+|++++..+ +.+.|+++++ .+++|+.||.|+|..+.
T Consensus 103 ~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~~V~~~dG-----~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 103 DLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKSLVVCDDG-----VKIQASLVLDATGFSRC 170 (447)
T ss_pred cccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeEEEEECCC-----CEEEcCEEEECcCCCcC
Confidence 000001124678888888888888888875 56899998876 6677888775 68999999999997543
No 104
>PRK08244 hypothetical protein; Provisional
Probab=99.16 E-value=8.4e-10 Score=111.24 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=85.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc--------------CC----------CCceeeecCCcc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL--------------KT----------YDRLRLHLPKQF 89 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--------------~~----------~~~~~~~~~~~~ 89 (443)
.+||+||||||+|+++|..|++.|++++|+|+.+.....-+. .. ............
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 589999999999999999999999999999997643211000 00 000000000000
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 90 CQLPLMPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
..+........+........+.+.+.+.+.+.+++++++++|++++..+ +.+.++..+.. + ..++++|+||.|.|.
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~~~-g-~~~i~a~~vVgADG~ 157 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVEVVVRGPD-G-LRTLTSSYVVGADGA 157 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEEEEEEeCC-c-cEEEEeCEEEECCCC
Confidence 0011000000111123566778888888888899999999999998776 55656654321 1 257999999999998
Q ss_pred CCC
Q 013435 170 NAE 172 (443)
Q Consensus 170 ~~~ 172 (443)
+|.
T Consensus 158 ~S~ 160 (493)
T PRK08244 158 GSI 160 (493)
T ss_pred ChH
Confidence 763
No 105
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.15 E-value=7e-10 Score=109.43 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=84.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc------cccC----CCCceeeecC---------------C
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL------WQLK----TYDRLRLHLP---------------K 87 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~------w~~~----~~~~~~~~~~---------------~ 87 (443)
..|||+||||||+|+++|+.|++.|++|+|+|+.+.+|.. .... .++.+....+ .
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 3589999999999999999999999999999998755421 1100 0110000000 0
Q ss_pred ccccCCCC--CC-CCCCCCC-CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEE
Q 013435 88 QFCQLPLM--PF-PSNFPTY-PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWL 163 (443)
Q Consensus 88 ~~~~~~~~--~~-~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~v 163 (443)
....+.+. .. ......+ ..+..+..++.+.+.+.|++++.+++|+++..++ +.+.+...++ .+++|+.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g-----~~i~A~~V 156 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADG-----DVIEAKTV 156 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCC-----cEEECCEE
Confidence 00000000 00 0000112 3578888889998989999999999999998765 4443333333 57999999
Q ss_pred EEccCCCC
Q 013435 164 IVATGENA 171 (443)
Q Consensus 164 IiAtG~~~ 171 (443)
|+|+|..+
T Consensus 157 I~A~G~~s 164 (428)
T PRK10157 157 ILADGVNS 164 (428)
T ss_pred EEEeCCCH
Confidence 99999744
No 106
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.14 E-value=2.3e-10 Score=110.26 Aligned_cols=135 Identities=23% Similarity=0.243 Sum_probs=87.4
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc----------------------CC--CC--ceeeecC--
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL----------------------KT--YD--RLRLHLP-- 86 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~----------------------~~--~~--~~~~~~~-- 86 (443)
+||+|||||++|+++|..|+++|++++|+|+.+......+. .. .. .......
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 68999999999999999999999999999997754211100 00 00 0000000
Q ss_pred ---------CccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEE
Q 013435 87 ---------KQFCQLPLMPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETV 157 (443)
Q Consensus 87 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 157 (443)
.....+. ............+..+.+.|.+.+++.+++++++++|++++.+. ..+.+.......++..+
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~~ 158 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEET 158 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEEE
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCceeE
Confidence 0000000 00000111123578899999999998899999999999998877 66666666665556579
Q ss_pred EEeCEEEEccCCCCC
Q 013435 158 YLCQWLIVATGENAE 172 (443)
Q Consensus 158 i~a~~vIiAtG~~~~ 172 (443)
++||.||.|.|.+|.
T Consensus 159 i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 159 IEADLVVGADGAHSK 173 (356)
T ss_dssp EEESEEEE-SGTT-H
T ss_pred EEEeeeecccCcccc
Confidence 999999999998774
No 107
>PRK06847 hypothetical protein; Provisional
Probab=99.13 E-value=1.1e-09 Score=106.68 Aligned_cols=135 Identities=21% Similarity=0.212 Sum_probs=89.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc----ccc----------C----------CCCceeeecCCc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL----WQL----------K----------TYDRLRLHLPKQ 88 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~----w~~----------~----------~~~~~~~~~~~~ 88 (443)
++.||+|||||++|+++|..|.+.|++++|+|+.+..... ... . ............
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 4678999999999999999999999999999997643211 000 0 000011110000
Q ss_pred --cccCCCCCCC-CCC--CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEE
Q 013435 89 --FCQLPLMPFP-SNF--PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWL 163 (443)
Q Consensus 89 --~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~v 163 (443)
...++..... ..+ .....+.++.+.+.+.+.+.+++++++++|++++..+ +.+.+.+.++ .++.+|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ad~v 155 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVTFSDG-----TTGRYDLV 155 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEEEcCC-----CEEEcCEE
Confidence 0011000000 000 1234678888999888888899999999999998766 5677777665 57999999
Q ss_pred EEccCCCCCCc
Q 013435 164 IVATGENAEEV 174 (443)
Q Consensus 164 IiAtG~~~~p~ 174 (443)
|+|+|.++..+
T Consensus 156 I~AdG~~s~~r 166 (375)
T PRK06847 156 VGADGLYSKVR 166 (375)
T ss_pred EECcCCCcchh
Confidence 99999876543
No 108
>PRK06834 hypothetical protein; Provisional
Probab=99.12 E-value=1.2e-09 Score=109.35 Aligned_cols=132 Identities=23% Similarity=0.280 Sum_probs=85.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC--c-----cccc--------CCCCcee-----eecCC-ccccC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIA--S-----LWQL--------KTYDRLR-----LHLPK-QFCQL 92 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g--g-----~w~~--------~~~~~~~-----~~~~~-~~~~~ 92 (443)
.+||+||||||+|+++|..|++.|++++|+|+.+... + .+.. ..++.+. ..... ....+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4899999999999999999999999999999976421 1 1110 0000000 00000 00001
Q ss_pred CCCCCCC--CCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCC
Q 013435 93 PLMPFPS--NFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 93 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~ 170 (443)
.....+. .+........+...+.+.+++.+++++++++|++++.++ +.+.++..++ .++++|+||.|+|.+
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~v~~~~g-----~~i~a~~vVgADG~~ 155 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD--TGVDVELSDG-----RTLRAQYLVGCDGGR 155 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEEEEECCC-----CEEEeCEEEEecCCC
Confidence 0000111 111123456777788888888899999999999999876 5666766543 579999999999987
Q ss_pred CC
Q 013435 171 AE 172 (443)
Q Consensus 171 ~~ 172 (443)
|.
T Consensus 156 S~ 157 (488)
T PRK06834 156 SL 157 (488)
T ss_pred CC
Confidence 74
No 109
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.10 E-value=7.4e-10 Score=94.11 Aligned_cols=139 Identities=20% Similarity=0.283 Sum_probs=88.7
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc-ccccC-CCCceeeecCCcc-ccCCCCCCCCCCCCC--C
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS-LWQLK-TYDRLRLHLPKQF-CQLPLMPFPSNFPTY--P 105 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~ 105 (443)
.....||+|+||||+||+||+.|++.|++++|+|++-.+|| .|.-. .++.+.+..+... .+--..++.+.-.++ .
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ 106 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVA 106 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEe
Confidence 34566999999999999999999999999999999887765 78754 3444444433221 111112222211222 2
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCC--e----EEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSR--L----WRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~--~----~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
...++..-+..-+-+.|..++....|+++-..++.. . |+.....+.--.+..+++++||-|||+
T Consensus 107 ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 107 DSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred cHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 455666666666666788888899999887776421 1 111111111112368999999999996
No 110
>PRK06184 hypothetical protein; Provisional
Probab=99.08 E-value=2.4e-09 Score=108.15 Aligned_cols=135 Identities=21% Similarity=0.267 Sum_probs=84.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc------cccc--------C----------CCCceeeecCCc-
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS------LWQL--------K----------TYDRLRLHLPKQ- 88 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg------~w~~--------~----------~~~~~~~~~~~~- 88 (443)
.+||+||||||+|+++|..|+++|++++|+|+.+.... .+.. . .+..........
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 57999999999999999999999999999999765421 1100 0 001111100000
Q ss_pred ccc--CCCC--CCCC-CC--CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeC
Q 013435 89 FCQ--LPLM--PFPS-NF--PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQ 161 (443)
Q Consensus 89 ~~~--~~~~--~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~ 161 (443)
... +... ..+. .+ ....+...+...+.+.+.+.+++++++++|++++.++ +.+.++..... +..+++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~~~--~~~~i~a~ 158 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--DGVTARVAGPA--GEETVRAR 158 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEEEEEEeCC--CeEEEEeC
Confidence 000 0000 0000 00 1123456677777887888899999999999998876 55656653211 12689999
Q ss_pred EEEEccCCCCC
Q 013435 162 WLIVATGENAE 172 (443)
Q Consensus 162 ~vIiAtG~~~~ 172 (443)
+||.|+|.+|.
T Consensus 159 ~vVgADG~~S~ 169 (502)
T PRK06184 159 YLVGADGGRSF 169 (502)
T ss_pred EEEECCCCchH
Confidence 99999998774
No 111
>PRK08013 oxidoreductase; Provisional
Probab=99.08 E-value=1.3e-09 Score=106.77 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=84.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc---c---------ccc--------CCCCc-----------ee
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS---L---------WQL--------KTYDR-----------LR 82 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg---~---------w~~--------~~~~~-----------~~ 82 (443)
.+||+||||||+|+++|..|++.|++|+|+|+.+.... . +.. ..++. +.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 47999999999999999999999999999999765221 0 000 00111 00
Q ss_pred eecCCcc--ccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEE
Q 013435 83 LHLPKQF--CQLPLMPFPSNF-PTYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVY 158 (443)
Q Consensus 83 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i 158 (443)
....... ..+......... .....+..+...+.+.+... +++++++++|++++.++ +.+.|+..++ .++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~i 155 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLTLKDG-----SML 155 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEEEcCC-----CEE
Confidence 0000000 000000000000 01235677777787777665 68899999999998776 5666776654 679
Q ss_pred EeCEEEEccCCCCCC
Q 013435 159 LCQWLIVATGENAEE 173 (443)
Q Consensus 159 ~a~~vIiAtG~~~~p 173 (443)
++|+||.|.|.+|.-
T Consensus 156 ~a~lvVgADG~~S~v 170 (400)
T PRK08013 156 TARLVVGADGANSWL 170 (400)
T ss_pred EeeEEEEeCCCCcHH
Confidence 999999999987754
No 112
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.08 E-value=2.4e-09 Score=109.03 Aligned_cols=139 Identities=21% Similarity=0.209 Sum_probs=89.3
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC------------------------CCCceeeecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK------------------------TYDRLRLHLPK 87 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~------------------------~~~~~~~~~~~ 87 (443)
...+||+||||||+|+++|..|.+.|++++|+|+.+......+.. ...........
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 567899999999999999999999999999999987543211110 00111111000
Q ss_pred --ccccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeC
Q 013435 88 --QFCQLPL-MPFPSNFP--TYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQ 161 (443)
Q Consensus 88 --~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~ 161 (443)
....+.. ......++ .......+.+.+.+.+.++ +++++++++|++++.++ +.+.++..+. +++..+++||
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~v~~~~~-~G~~~~i~ad 164 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVTVTLTDA-DGQRETVRAR 164 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEEEEEEcC-CCCEEEEEEE
Confidence 0011110 00000011 1224566777777777665 88999999999999877 5666776532 2334789999
Q ss_pred EEEEccCCCCCC
Q 013435 162 WLIVATGENAEE 173 (443)
Q Consensus 162 ~vIiAtG~~~~p 173 (443)
+||.|+|.+|..
T Consensus 165 ~vVgADG~~S~v 176 (538)
T PRK06183 165 YVVGCDGANSFV 176 (538)
T ss_pred EEEecCCCchhH
Confidence 999999987753
No 113
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.07 E-value=1.4e-09 Score=107.05 Aligned_cols=132 Identities=20% Similarity=0.235 Sum_probs=86.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCcc--------ccc--------CCCCc----------eeeec
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASL--------WQL--------KTYDR----------LRLHL 85 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~--------w~~--------~~~~~----------~~~~~ 85 (443)
+|||+||||||+|+++|..|++.| ++|+|+|+.+..... +.. ..++. +....
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 589999999999999999999995 999999997642110 000 00000 00000
Q ss_pred CCc-------cccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEE
Q 013435 86 PKQ-------FCQLPLMP-FPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETV 157 (443)
Q Consensus 86 ~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 157 (443)
... ...+.... ....+.....+..+...+.+.+.+.+++++++++|++++..+ +.+.|++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g-----~~ 153 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSDG-----SV 153 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECCC-----CE
Confidence 000 00000000 000111134678888888888888899999999999998776 6677777654 57
Q ss_pred EEeCEEEEccCCCCC
Q 013435 158 YLCQWLIVATGENAE 172 (443)
Q Consensus 158 i~a~~vIiAtG~~~~ 172 (443)
+.+|.||.|+|.++.
T Consensus 154 ~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 154 LEARLLVAADGARSK 168 (403)
T ss_pred EEeCEEEEcCCCChH
Confidence 999999999997654
No 114
>PRK10015 oxidoreductase; Provisional
Probab=99.07 E-value=2.9e-09 Score=104.96 Aligned_cols=131 Identities=15% Similarity=0.207 Sum_probs=83.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc------cccC----CCCceeeecCC------ccccC-C---
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL------WQLK----TYDRLRLHLPK------QFCQL-P--- 93 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~------w~~~----~~~~~~~~~~~------~~~~~-~--- 93 (443)
.|||+||||||+|+++|+.|++.|++|+|+|+.+.+|.. .... ..+.+....+. ....+ .
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEES 84 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCC
Confidence 589999999999999999999999999999998755421 1110 01111000000 00000 0
Q ss_pred --CCCCCCC------CCCC-CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEE
Q 013435 94 --LMPFPSN------FPTY-PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLI 164 (443)
Q Consensus 94 --~~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vI 164 (443)
...+... ...+ ..+..+..++.+.+.+.|++++.++.|+.+..++ +.+......+ .+++|+.||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~-----~~i~A~~VI 157 (429)
T PRK10015 85 AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGD-----DILEANVVI 157 (429)
T ss_pred ceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCC-----eEEECCEEE
Confidence 0001000 0122 3567788888888888899999999999988765 4443222222 689999999
Q ss_pred EccCCCC
Q 013435 165 VATGENA 171 (443)
Q Consensus 165 iAtG~~~ 171 (443)
+|+|..+
T Consensus 158 ~AdG~~s 164 (429)
T PRK10015 158 LADGVNS 164 (429)
T ss_pred EccCcch
Confidence 9999644
No 115
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.06 E-value=1.1e-09 Score=107.11 Aligned_cols=133 Identities=23% Similarity=0.204 Sum_probs=88.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc--CCCCc----eeeec--------CCccccCCCCC--
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL--KTYDR----LRLHL--------PKQFCQLPLMP-- 96 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--~~~~~----~~~~~--------~~~~~~~~~~~-- 96 (443)
+.|||+||||||||++||+.|++.|++|+++|+...+|.--.. ..++. +.... ......++...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 5799999999999999999999999999999998877641111 11110 00000 00000111000
Q ss_pred CCCC-CCCC-CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 97 FPSN-FPTY-PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 97 ~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
+... -..+ ..+..+.+++...+.+.|..++.++.+..+..++ +.+.+....+ . .+++|++||.|+|..+
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~--~~~~~~~~~~---~-~e~~a~~vI~AdG~~s 152 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED--DGVVVGVRAG---D-DEVRAKVVIDADGVNS 152 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC--CcEEEEEEcC---C-EEEEcCEEEECCCcch
Confidence 0000 0122 3578889999999999999999999999999887 4443444332 1 6999999999999643
No 116
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.06 E-value=1.8e-09 Score=105.63 Aligned_cols=134 Identities=17% Similarity=0.123 Sum_probs=86.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC----c-c------ccc--------CCCCc-----------e
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIA----S-L------WQL--------KTYDR-----------L 81 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g----g-~------w~~--------~~~~~-----------~ 81 (443)
...+||+||||||+|+++|..|++.|++|+|+|+.+... + . +.. ..++. +
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 456899999999999999999999999999999976321 0 0 000 00000 0
Q ss_pred eeecCC--ccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEE
Q 013435 82 RLHLPK--QFCQLPLMPFP-SNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVY 158 (443)
Q Consensus 82 ~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i 158 (443)
...... ....+...... ...........+.+.+.+.+.+.+++++++++|++++.++ +.+.|++.++ .++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~ 156 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVRLRLDDG-----RRL 156 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEEEEECCC-----CEE
Confidence 000000 00000000000 0001113457777888888888899999999999998776 6677777654 579
Q ss_pred EeCEEEEccCCCCC
Q 013435 159 LCQWLIVATGENAE 172 (443)
Q Consensus 159 ~a~~vIiAtG~~~~ 172 (443)
++|.||.|+|.++.
T Consensus 157 ~a~~vV~AdG~~S~ 170 (392)
T PRK08773 157 EAALAIAADGAAST 170 (392)
T ss_pred EeCEEEEecCCCch
Confidence 99999999998664
No 117
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.06 E-value=1.1e-09 Score=107.80 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=83.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc------ccc-------c---------CCCCce---------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS------LWQ-------L---------KTYDRL--------- 81 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg------~w~-------~---------~~~~~~--------- 81 (443)
+.+||+|||||++|+++|..|.++|++|+|+|+.+...+ .+. . ..++.+
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 357999999999999999999999999999999762100 000 0 001110
Q ss_pred --eeecCCcc--ccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEE
Q 013435 82 --RLHLPKQF--CQLPLMPFP-SNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEET 156 (443)
Q Consensus 82 --~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 156 (443)
........ ..+...... ...........+.+.+.+.+.+.+++++++++|++++..+ +.+.|++.++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g-----~ 153 (405)
T PRK05714 81 EMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG--DDWLLTLADG-----R 153 (405)
T ss_pred eEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEEEEECCC-----C
Confidence 00000000 000000000 0001112345666666666666788889999999998776 5677777664 5
Q ss_pred EEEeCEEEEccCCCCCC
Q 013435 157 VYLCQWLIVATGENAEE 173 (443)
Q Consensus 157 ~i~a~~vIiAtG~~~~p 173 (443)
+++||+||.|+|.+|..
T Consensus 154 ~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 154 QLRAPLVVAADGANSAV 170 (405)
T ss_pred EEEeCEEEEecCCCchh
Confidence 79999999999987754
No 118
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.05 E-value=2.3e-09 Score=104.52 Aligned_cols=134 Identities=21% Similarity=0.208 Sum_probs=88.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecC-CCCCccccc-----C--------------------CCCceeeecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERA-NCIASLWQL-----K--------------------TYDRLRLHLPK 87 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~-~~~gg~w~~-----~--------------------~~~~~~~~~~~ 87 (443)
.+||+||||||+|+++|..|++.|++|+|+|+. ..+-..-+. + .+..+......
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 579999999999999999999999999999997 221100000 0 00001111111
Q ss_pred c-cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcC-CccccceeEEEEEEeCCCCeEEEEEe-ecCCCcEEEEEeCEE
Q 013435 88 Q-FCQLPLMPFPS-NFPTYPTKQQFLTYLETYTNHFG-LDPVFNTTVVNAEYDHLSRLWRVKTQ-QGLKQEETVYLCQWL 163 (443)
Q Consensus 88 ~-~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-~~v~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~i~a~~v 163 (443)
. ...+....... .........++...+.+.+...+ ++++++++|+.++.++ +.+.++.+ ++ .+++||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~v~l~~dG-----~~~~a~ll 154 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVTVTLSFDG-----ETLDADLL 154 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceEEEEcCCC-----cEEecCEE
Confidence 0 01111111111 11122467888888888887766 8899999999999988 55557766 55 59999999
Q ss_pred EEccCCCCCCc
Q 013435 164 IVATGENAEEV 174 (443)
Q Consensus 164 IiAtG~~~~p~ 174 (443)
|.|.|.+|.-+
T Consensus 155 VgADG~~S~vR 165 (387)
T COG0654 155 VGADGANSAVR 165 (387)
T ss_pred EECCCCchHHH
Confidence 99999877533
No 119
>PRK07190 hypothetical protein; Provisional
Probab=99.05 E-value=3.3e-09 Score=106.08 Aligned_cols=132 Identities=20% Similarity=0.202 Sum_probs=84.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC--------------CCCc----------eeeecCCcc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK--------------TYDR----------LRLHLPKQF 89 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--------------~~~~----------~~~~~~~~~ 89 (443)
.+||+||||||+|+++|..|++.|.+++|+|+.+......+.. .++. .........
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 4799999999999999999999999999999987542111100 0000 000000000
Q ss_pred ccCCC--C-CCCCC-C--CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEE
Q 013435 90 CQLPL--M-PFPSN-F--PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWL 163 (443)
Q Consensus 90 ~~~~~--~-~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~v 163 (443)
..... . ..... . ........+...+.+.+.+.|++++++++|++++.++ +.+.+.+.++ .+++|++|
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~v~~~~g-----~~v~a~~v 157 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCLTTLSNG-----ERIQSRYV 157 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeEEEECCC-----cEEEeCEE
Confidence 00000 0 00000 0 0112456677777777888899999999999999877 5555665543 58999999
Q ss_pred EEccCCCCC
Q 013435 164 IVATGENAE 172 (443)
Q Consensus 164 IiAtG~~~~ 172 (443)
|.|+|.+|.
T Consensus 158 VgADG~~S~ 166 (487)
T PRK07190 158 IGADGSRSF 166 (487)
T ss_pred EECCCCCHH
Confidence 999998763
No 120
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.03 E-value=2.5e-09 Score=104.55 Aligned_cols=129 Identities=22% Similarity=0.234 Sum_probs=83.5
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCc----eee-----ecCCccc--cCCCCCCCCCCC-C
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDR----LRL-----HLPKQFC--QLPLMPFPSNFP-T 103 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~----~~~-----~~~~~~~--~~~~~~~~~~~~-~ 103 (443)
||+|||||++|+++|..|++.|++|+|+|+.+..++.+....+.. +.. ....... ..+........+ .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 799999999999999999999999999999877665322111110 000 0000000 000000000001 1
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 104 YPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
...+..+.+++.+.+.+.++.++ ...|+.+....+ +.+.|++.++ .+++|+.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~~~~v~~~~g-----~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGV-ALSTVYCAGG-----QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC-ceeEEEeCCC-----CEEEeCEEEECCCCch
Confidence 24678888999888888887774 557888877622 5677777664 5899999999999765
No 121
>PLN02697 lycopene epsilon cyclase
Probab=99.02 E-value=4.6e-09 Score=104.97 Aligned_cols=132 Identities=20% Similarity=0.217 Sum_probs=83.5
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC---CcccccCCCCceeee------cCCccccCCCC-CC-CC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI---ASLWQLKTYDRLRLH------LPKQFCQLPLM-PF-PS 99 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~---gg~w~~~~~~~~~~~------~~~~~~~~~~~-~~-~~ 99 (443)
....+||+||||||+|+++|..|++.|++|+++|+.... .|.|... ...+.+. .......++.. .. ..
T Consensus 105 ~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~ 183 (529)
T PLN02697 105 GDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIG 183 (529)
T ss_pred ccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeecc
Confidence 345689999999999999999999999999999985433 2344321 0000000 00000000000 00 00
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 100 NFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
..-....+..+.+.+.+.+.+.++.+ .++.|+++...+ +.+. +.+.++ .+++|+.||+|+|.++
T Consensus 184 ~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~~dG-----~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 184 RAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS--DGLRLVACEDG-----RVIPCRLATVASGAAS 248 (529)
T ss_pred CcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcEEEEEEcCC-----cEEECCEEEECCCcCh
Confidence 00112467888888888888888887 677899988765 3333 334443 6799999999999876
No 122
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.01 E-value=3.6e-09 Score=102.49 Aligned_cols=141 Identities=21% Similarity=0.266 Sum_probs=90.0
Q ss_pred CeEEECCCHHHHHHHHHH--HHcCCCEEEEecCCCC--Cc--cccc---C----------CCCceeeecCCccccCCCCC
Q 013435 36 GPVIVGAGPSGLATAACL--TEKGVPSLILERANCI--AS--LWQL---K----------TYDRLRLHLPKQFCQLPLMP 96 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l--~~~g~~v~iie~~~~~--gg--~w~~---~----------~~~~~~~~~~~~~~~~~~~~ 96 (443)
||+|||||+||+++|.+| .+.|.+|+|||+++.. .. +|.. . .++...+..+.........+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 899999999999999999 6678999999997765 21 2322 1 01111111111100000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 97 FPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
-....+..+.+++.+.+...+ ..+.+.+|++|+... ..+.|.++++ .+++|+.||-|.|..+. ..
T Consensus 81 -----Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~--~~~~v~~~~g-----~~i~a~~VvDa~g~~~~--~~ 145 (374)
T PF05834_consen 81 -----YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETG--DGVLVVLADG-----RTIRARVVVDARGPSSP--KA 145 (374)
T ss_pred -----eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecC--ceEEEEECCC-----CEEEeeEEEECCCcccc--cc
Confidence 012477888888888877444 567788999999887 5666788776 69999999999995332 22
Q ss_pred CCCCCCCCcccEeec
Q 013435 177 YIEGMDGFRGPIFHS 191 (443)
Q Consensus 177 ~~~g~~~~~~~~~~~ 191 (443)
.-.+...+.|..+.+
T Consensus 146 ~~~~~Q~f~G~~v~~ 160 (374)
T PF05834_consen 146 RPLGLQHFYGWEVET 160 (374)
T ss_pred cccccceeEEEEEec
Confidence 233445555555544
No 123
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.01 E-value=3.6e-09 Score=102.82 Aligned_cols=132 Identities=18% Similarity=0.246 Sum_probs=84.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc-----------------------cccc-----CCCCceeeec
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS-----------------------LWQL-----KTYDRLRLHL 85 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg-----------------------~w~~-----~~~~~~~~~~ 85 (443)
++||+||||||+|+++|..|++.|++|+|+|+.+.... .|.. ..+..+....
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD 80 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence 57999999999999999999999999999998632110 1110 0011111110
Q ss_pred CCc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC-CccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCE
Q 013435 86 PKQ--FCQLPLMPFPSNFPTYPTKQQFLTYLETYTNHFG-LDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQW 162 (443)
Q Consensus 86 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~ 162 (443)
... ...+... ....+.....+.++...+.+.+.+.+ +.++++++++++...+ +.+.|+..+ .+++||.
T Consensus 81 ~~g~~~~~~~~~-~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~------~~~~adl 151 (374)
T PRK06617 81 NKASEILDLRND-ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSIIKFDD------KQIKCNL 151 (374)
T ss_pred CCCceEEEecCC-CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEEEEEcC------CEEeeCE
Confidence 100 0111110 00001112367888888888777765 6778899999998776 566677653 4899999
Q ss_pred EEEccCCCCCCc
Q 013435 163 LIVATGENAEEV 174 (443)
Q Consensus 163 vIiAtG~~~~p~ 174 (443)
||.|.|.+|.-+
T Consensus 152 vIgADG~~S~vR 163 (374)
T PRK06617 152 LIICDGANSKVR 163 (374)
T ss_pred EEEeCCCCchhH
Confidence 999999877543
No 124
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.00 E-value=4.3e-09 Score=103.92 Aligned_cols=138 Identities=19% Similarity=0.266 Sum_probs=83.8
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--------ccc--------CCCCc----------eeeec
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--------WQL--------KTYDR----------LRLHL 85 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--------w~~--------~~~~~----------~~~~~ 85 (443)
...+||+|||||++|+++|..|++.|++|+|+|+.+..... +.. ...+. +....
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 95 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSD 95 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEe
Confidence 34689999999999999999999999999999998754210 000 00000 00000
Q ss_pred CC--ccccCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeC
Q 013435 86 PK--QFCQLPLMPFPSNFPTY-PTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQ 161 (443)
Q Consensus 86 ~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~ 161 (443)
.. ....+..........++ .....+.+.+.+.+.+. +++++++++|++++.++ +.+.|+..++ ++..+++||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~--~~~~~i~ad 171 (415)
T PRK07364 96 ADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAATVTLEIE--GKQQTLQSK 171 (415)
T ss_pred CCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeEEEEccC--CcceEEeee
Confidence 00 00011100000000011 12345666676666664 68888999999998776 5666766532 122579999
Q ss_pred EEEEccCCCCCC
Q 013435 162 WLIVATGENAEE 173 (443)
Q Consensus 162 ~vIiAtG~~~~p 173 (443)
+||.|+|.+|.-
T Consensus 172 lvIgADG~~S~v 183 (415)
T PRK07364 172 LVVAADGARSPI 183 (415)
T ss_pred EEEEeCCCCchh
Confidence 999999987753
No 125
>PRK06126 hypothetical protein; Provisional
Probab=99.00 E-value=1.2e-08 Score=104.30 Aligned_cols=139 Identities=19% Similarity=0.199 Sum_probs=86.9
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC----------------------CCC------ceee
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK----------------------TYD------RLRL 83 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~----------------------~~~------~~~~ 83 (443)
...+||+||||||+|+++|..|+++|++++|+|+.+.....-+.. ..+ ....
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~ 84 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYF 84 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEE
Confidence 345799999999999999999999999999999976432110000 000 0000
Q ss_pred ec--CCccccCCCCCC--------------CC-CCCCCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEE
Q 013435 84 HL--PKQFCQLPLMPF--------------PS-NFPTYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRV 145 (443)
Q Consensus 84 ~~--~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v 145 (443)
.. ......+..... .. ......+...+...+.+.+.+. +++++++++|++++.++ +.+.+
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v 162 (545)
T PRK06126 85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVTA 162 (545)
T ss_pred ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEEE
Confidence 00 000000000000 00 0011235566777777777654 78999999999998876 55666
Q ss_pred EEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 146 KTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 146 ~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+..+...++..++++|+||.|+|.+|.
T Consensus 163 ~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 163 TVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EEEECCCCcEEEEEEEEEEecCCcchH
Confidence 665533445568999999999998774
No 126
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.00 E-value=2.6e-09 Score=93.69 Aligned_cols=123 Identities=22% Similarity=0.292 Sum_probs=81.1
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecC----------------------------
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLP---------------------------- 86 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~---------------------------- 86 (443)
.+|+|||+|++|++||..|...|.+|+++||...+||.-.....++-..+..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 5799999999999999999999999999999998887433321111111110
Q ss_pred CccccCCCC---CCCCC--CCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeC
Q 013435 87 KQFCQLPLM---PFPSN--FPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQ 161 (443)
Q Consensus 87 ~~~~~~~~~---~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~ 161 (443)
...+.+... +..++ +-+-+....+.+++. -.+++.++++|+.+...+ ..|+++++++. ....+|
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA-----tdL~V~~~~rVt~v~~~~--~~W~l~~~~g~----~~~~~d 150 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA-----TDLTVVLETRVTEVARTD--NDWTLHTDDGT----RHTQFD 150 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHHHHh-----ccchhhhhhhhhhheecC--CeeEEEecCCC----cccccc
Confidence 111111111 11111 122233344444332 256888999999999986 89999997642 678999
Q ss_pred EEEEccC
Q 013435 162 WLIVATG 168 (443)
Q Consensus 162 ~vIiAtG 168 (443)
.||||.=
T Consensus 151 ~vvla~P 157 (331)
T COG3380 151 DVVLAIP 157 (331)
T ss_pred eEEEecC
Confidence 9999986
No 127
>PRK11445 putative oxidoreductase; Provisional
Probab=99.00 E-value=7.4e-09 Score=99.61 Aligned_cols=133 Identities=16% Similarity=0.191 Sum_probs=82.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC---------cc-ccc--------CCC-CceeeecCCccccCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIA---------SL-WQL--------KTY-DRLRLHLPKQFCQLPL 94 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g---------g~-w~~--------~~~-~~~~~~~~~~~~~~~~ 94 (443)
+|||+||||||+|+++|..|++. ++|+++|+.+..+ +. +.. ... +......+. ......
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~-~~~~~~ 78 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ-IFAVKT 78 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc-cceeeE
Confidence 58999999999999999999999 9999999976432 11 100 000 000000000 000000
Q ss_pred CCCCC----CC--C-CCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEcc
Q 013435 95 MPFPS----NF--P-TYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVAT 167 (443)
Q Consensus 95 ~~~~~----~~--~-~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAt 167 (443)
..+.. .+ . ....+.++.+.+.+. ...++++++++.|++++..+ +.|.|+.... +...+++||+||.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~~--g~~~~i~a~~vV~Ad 153 (351)
T PRK11445 79 IDLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWRED--DGYHVIFRAD--GWEQHITARYLVGAD 153 (351)
T ss_pred ecccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcC--CEEEEEEecC--CcEEEEEeCEEEECC
Confidence 00000 00 1 124677787777764 35578889999999998876 6677775321 122479999999999
Q ss_pred CCCCCC
Q 013435 168 GENAEE 173 (443)
Q Consensus 168 G~~~~p 173 (443)
|..|..
T Consensus 154 G~~S~v 159 (351)
T PRK11445 154 GANSMV 159 (351)
T ss_pred CCCcHH
Confidence 986653
No 128
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.99 E-value=5.5e-09 Score=103.28 Aligned_cols=144 Identities=13% Similarity=0.161 Sum_probs=86.7
Q ss_pred HhhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC----CCcccccCCC--------------CceeeecCCcc
Q 013435 28 AARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANC----IASLWQLKTY--------------DRLRLHLPKQF 89 (443)
Q Consensus 28 ~~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~----~gg~w~~~~~--------------~~~~~~~~~~~ 89 (443)
++..-+.|||+||||||+|+++|..|++.|++|+|+|+... .|+....... ..+.+..+...
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~ 112 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNV 112 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCce
Confidence 33457789999999999999999999999999999999752 1221000000 00111111100
Q ss_pred -ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCC-CCeEEEEEeecC----CCcEEEEEeCEE
Q 013435 90 -CQLPLMPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHL-SRLWRVKTQQGL----KQEETVYLCQWL 163 (443)
Q Consensus 90 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~-~~~~~v~~~~~~----~~~~~~i~a~~v 163 (443)
..+.....+..+-....+..+..++.+.+.+.|++++.+ .+++++...+ .+.+.|+..+.. .++..+++||.|
T Consensus 113 ~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~V 191 (450)
T PLN00093 113 AVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAV 191 (450)
T ss_pred EEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEE
Confidence 000000000011112578889999999998889888665 4777765321 144556554310 122368999999
Q ss_pred EEccCCCCC
Q 013435 164 IVATGENAE 172 (443)
Q Consensus 164 IiAtG~~~~ 172 (443)
|.|+|..|.
T Consensus 192 IgADG~~S~ 200 (450)
T PLN00093 192 IGADGANSR 200 (450)
T ss_pred EEcCCcchH
Confidence 999997654
No 129
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.98 E-value=5.2e-09 Score=102.38 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=84.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc---ccccC----------------CCCceeee--cCCccc-
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS---LWQLK----------------TYDRLRLH--LPKQFC- 90 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg---~w~~~----------------~~~~~~~~--~~~~~~- 90 (443)
+.+||+|||||++|+++|..|++.|.+|+|+|+.+.... .|... ..+.+... .+....
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 457999999999999999999999999999999875421 22110 00000000 000000
Q ss_pred -------cCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcC-CccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEE
Q 013435 91 -------QLPLMPFPSNFP---TYPTKQQFLTYLETYTNHFG-LDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYL 159 (443)
Q Consensus 91 -------~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~-~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~ 159 (443)
.+....+....+ ....+..+.+.+.+.+.+.+ +.++ ++.|+++...+ +.+.|++.++ .+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~v~~~~g-----~~~~ 155 (388)
T PRK07608 84 VFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP--DAATLTLADG-----QVLR 155 (388)
T ss_pred EEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEEEEECCC-----CEEE
Confidence 000000000001 01246778888888777776 7777 88899988766 5677777664 5799
Q ss_pred eCEEEEccCCCCC
Q 013435 160 CQWLIVATGENAE 172 (443)
Q Consensus 160 a~~vIiAtG~~~~ 172 (443)
+|+||.|+|.+|.
T Consensus 156 a~~vI~adG~~S~ 168 (388)
T PRK07608 156 ADLVVGADGAHSW 168 (388)
T ss_pred eeEEEEeCCCCch
Confidence 9999999998764
No 130
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.98 E-value=4.7e-09 Score=102.62 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=82.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc------------------ccccC-----CCCceeeecCCc-c
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS------------------LWQLK-----TYDRLRLHLPKQ-F 89 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg------------------~w~~~-----~~~~~~~~~~~~-~ 89 (443)
.+||+|||||++|+++|..|++.|++|+|+|+.+..+. .|..- .+..+....... .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 47999999999999999999999999999999764321 11100 000011100000 0
Q ss_pred c-----cCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEE
Q 013435 90 C-----QLPLMPFPSNFPT-YPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWL 163 (443)
Q Consensus 90 ~-----~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~v 163 (443)
. .+..........+ ......+.+.+.+.+.+.+...+++++|++++..+ +.+.|++.++ ..+++|.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~a~~v 159 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE--DEVTVTLADG-----TTLSARLV 159 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEEEEECCC-----CEEEEeEE
Confidence 0 0000000000011 13556777777777776643337899999998776 6677877654 57999999
Q ss_pred EEccCCCCC
Q 013435 164 IVATGENAE 172 (443)
Q Consensus 164 IiAtG~~~~ 172 (443)
|.|+|.+|.
T Consensus 160 I~AdG~~S~ 168 (388)
T PRK07494 160 VGADGRNSP 168 (388)
T ss_pred EEecCCCch
Confidence 999998664
No 131
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.98 E-value=5.5e-09 Score=102.10 Aligned_cols=126 Identities=22% Similarity=0.328 Sum_probs=84.7
Q ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecC-----Cc---------------cccCC----
Q 013435 38 VIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLP-----KQ---------------FCQLP---- 93 (443)
Q Consensus 38 vIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~-----~~---------------~~~~~---- 93 (443)
+|||||++|+++|..|++.|.+|+|+|+.+.+|+.+.... +-+++.. .. +..+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG--~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISG--GGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccC--CceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence 6999999999999999999999999999988775432110 0000000 00 00000
Q ss_pred -------CCCCC--C---CCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeC
Q 013435 94 -------LMPFP--S---NFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQ 161 (443)
Q Consensus 94 -------~~~~~--~---~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~ 161 (443)
..++. . .++.......+.+.+.+.+++.+++++.++.|++++..+ +.|.++++. ..+.+|
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~~v~~~~------~~i~ad 150 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGFGVETSG------GEYEAD 150 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeEEEEECC------cEEEcC
Confidence 00000 0 011122457888888888888999999999999997765 567776642 578999
Q ss_pred EEEEccCCCCCC
Q 013435 162 WLIVATGENAEE 173 (443)
Q Consensus 162 ~vIiAtG~~~~p 173 (443)
.||+|+|..+.|
T Consensus 151 ~VIlAtG~~s~p 162 (400)
T TIGR00275 151 KVILATGGLSYP 162 (400)
T ss_pred EEEECCCCcccC
Confidence 999999986654
No 132
>PRK09126 hypothetical protein; Provisional
Probab=98.98 E-value=6.9e-09 Score=101.61 Aligned_cols=132 Identities=21% Similarity=0.244 Sum_probs=80.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------c----cccc--------CCCCceeee--cCCcc---
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIA-------S----LWQL--------KTYDRLRLH--LPKQF--- 89 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g-------g----~w~~--------~~~~~~~~~--~~~~~--- 89 (443)
.+||+||||||+|+++|..|+++|++|+|+|+.+... | .+.. ..++.+... .+...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 5899999999999999999999999999999976421 1 0000 000000000 00000
Q ss_pred ccC---CCCCCCC-----CCCCC-CCHHHHHHHHHHHHH-HcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEE
Q 013435 90 CQL---PLMPFPS-----NFPTY-PTKQQFLTYLETYTN-HFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYL 159 (443)
Q Consensus 90 ~~~---~~~~~~~-----~~~~~-~~~~~~~~~l~~~~~-~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~ 159 (443)
..- ....++. ...++ .....+.+.+.+.+. ..+++++++++|++++..+ +.+.|+++++ .+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~v~~~~g-----~~~~ 155 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQVTLANG-----RRLT 155 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEEEEEcCC-----CEEE
Confidence 000 0000100 00011 234455555555443 4578899999999998766 5666777654 5899
Q ss_pred eCEEEEccCCCCC
Q 013435 160 CQWLIVATGENAE 172 (443)
Q Consensus 160 a~~vIiAtG~~~~ 172 (443)
+|+||.|+|.++.
T Consensus 156 a~~vI~AdG~~S~ 168 (392)
T PRK09126 156 ARLLVAADSRFSA 168 (392)
T ss_pred eCEEEEeCCCCch
Confidence 9999999997654
No 133
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.97 E-value=4.6e-09 Score=102.85 Aligned_cols=132 Identities=19% Similarity=0.217 Sum_probs=82.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC----Cc---------------------ccccC------CCCcee
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI----AS---------------------LWQLK------TYDRLR 82 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~----gg---------------------~w~~~------~~~~~~ 82 (443)
.|||+|||||++|+++|..|++.|++|+|+|+.+.. ++ .|... .+..+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 479999999999999999999999999999997521 11 01000 000000
Q ss_pred ee-cCCccccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEE
Q 013435 83 LH-LPKQFCQLPLMPFPSNFPT-YPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYL 159 (443)
Q Consensus 83 ~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~ 159 (443)
.. .......+..........+ ...+..+.+.+.+.+.+. +++++.+++|+++...+ +.+.|++.++ .+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ 157 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD--DGWELTLADG-----EEIQ 157 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeEEEEECCC-----CEEE
Confidence 00 0000000000000000001 134566777777766666 88888899999998766 5677777654 5799
Q ss_pred eCEEEEccCCCCC
Q 013435 160 CQWLIVATGENAE 172 (443)
Q Consensus 160 a~~vIiAtG~~~~ 172 (443)
+|.||.|+|.+|.
T Consensus 158 a~~vI~AdG~~S~ 170 (391)
T PRK08020 158 AKLVIGADGANSQ 170 (391)
T ss_pred eCEEEEeCCCCch
Confidence 9999999998764
No 134
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.97 E-value=2.4e-09 Score=103.27 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.....+...+.+.+.+.|++++.+++|+++..++ +.|. |.+.+ ..++||.||+|+|.++.
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~------g~i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSD------GEIRADRVVLAAGAWSP 204 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETT------EEEEECEEEE--GGGHH
T ss_pred ccccchhhhhHHHHHHhhhhccccccccchhhcc--cccccccccc------cccccceeEecccccce
Confidence 4578899999999999999999999999999988 7787 88887 45999999999998654
No 135
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.96 E-value=1.5e-08 Score=99.00 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=82.1
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC------------------CCCceeeecCCcc-ccCCCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK------------------TYDRLRLHLPKQF-CQLPLM 95 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~------------------~~~~~~~~~~~~~-~~~~~~ 95 (443)
+||+||||||+|+++|..|++.|++|+++|+....+..+... ...++.+..+... ..+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999975432111110 0001111111110 000000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeC-CCCeEEEEEeecC----CCcEEEEEeCEEEEccCCC
Q 013435 96 PFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDH-LSRLWRVKTQQGL----KQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~-~~~~~~v~~~~~~----~~~~~~i~a~~vIiAtG~~ 170 (443)
.....+-....+..+..++.+.+.+.|++++.++ +.++.... ..+.+.|+..... .++..+++|++||.|+|..
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~ 159 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGAN 159 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcc
Confidence 0000111225788889999999999999987665 66665321 1244556543211 1233689999999999975
Q ss_pred CC
Q 013435 171 AE 172 (443)
Q Consensus 171 ~~ 172 (443)
|.
T Consensus 160 S~ 161 (398)
T TIGR02028 160 SR 161 (398)
T ss_pred hH
Confidence 53
No 136
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.96 E-value=4e-09 Score=103.47 Aligned_cols=133 Identities=25% Similarity=0.250 Sum_probs=84.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc------ccc--------CCCCc----------eeeecC---
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL------WQL--------KTYDR----------LRLHLP--- 86 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~------w~~--------~~~~~----------~~~~~~--- 86 (443)
..||+|||||++|+++|..|.+.|++|+|+|+.+.++.. +.+ ...+. +.....
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 468999999999999999999999999999998755321 100 00000 000000
Q ss_pred CccccCCCCC-CCCCC--CC-CCCHHHHHHHHHHHHHHcC-CccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeC
Q 013435 87 KQFCQLPLMP-FPSNF--PT-YPTKQQFLTYLETYTNHFG-LDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQ 161 (443)
Q Consensus 87 ~~~~~~~~~~-~~~~~--~~-~~~~~~~~~~l~~~~~~~~-~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~ 161 (443)
.....++... +...+ +. ...+.++.+.+.+.+.+.+ ++++++++|++++..+ +.+.+++.++ .++.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~ad 156 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVTVFDQQG-----NRWTGD 156 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceEEEEcCC-----CEEecC
Confidence 0000000000 00000 00 1356777777777766654 7888999999998765 5666776654 579999
Q ss_pred EEEEccCCCCCC
Q 013435 162 WLIVATGENAEE 173 (443)
Q Consensus 162 ~vIiAtG~~~~p 173 (443)
.||.|+|.+|..
T Consensus 157 ~vV~AdG~~S~~ 168 (396)
T PRK08163 157 ALIGCDGVKSVV 168 (396)
T ss_pred EEEECCCcChHH
Confidence 999999987654
No 137
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.96 E-value=5.2e-09 Score=102.23 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=84.0
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--------ccc-----------CCCCcee-----------eec
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--------WQL-----------KTYDRLR-----------LHL 85 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--------w~~-----------~~~~~~~-----------~~~ 85 (443)
||+|||||++|+++|..|++.|++|+|+|+.+..+.. ..- ...+.+. ...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999998753210 000 0000000 000
Q ss_pred CCcc--ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcC-CccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeC
Q 013435 86 PKQF--CQLPLMPFPS-NFPTYPTKQQFLTYLETYTNHFG-LDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQ 161 (443)
Q Consensus 86 ~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~ 161 (443)
.... ..+....... .......+..+.+.+.+.+.+.+ ++++++++|++++..+ +.+.++..++ ..+.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~~~ 153 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVELTLDDG-----QQLRAR 153 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeEEEECCC-----CEEEee
Confidence 0000 0000000000 00112356778888888777777 8899999999998776 6666776664 579999
Q ss_pred EEEEccCCCCC
Q 013435 162 WLIVATGENAE 172 (443)
Q Consensus 162 ~vIiAtG~~~~ 172 (443)
.||.|+|.++.
T Consensus 154 ~vi~adG~~S~ 164 (385)
T TIGR01988 154 LLVGADGANSK 164 (385)
T ss_pred EEEEeCCCCCH
Confidence 99999998664
No 138
>PRK06185 hypothetical protein; Provisional
Probab=98.95 E-value=8.2e-09 Score=101.64 Aligned_cols=136 Identities=16% Similarity=0.263 Sum_probs=83.4
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC-----CcccccC---------CCC-----------ceeeecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI-----ASLWQLK---------TYD-----------RLRLHLPK 87 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~-----gg~w~~~---------~~~-----------~~~~~~~~ 87 (443)
..+||+|||||++|+++|..|++.|++|+|+|+.+.. +..+... .++ .+......
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 5689999999999999999999999999999997532 1111110 000 01110000
Q ss_pred c-c--ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeE-EEEEeecCCCcEEEEEeCE
Q 013435 88 Q-F--CQLPLMPFPSNFPTYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLW-RVKTQQGLKQEETVYLCQW 162 (443)
Q Consensus 88 ~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~ 162 (443)
. . ..+.....+..+..+.....+.+.+.+.+.+. +++++.+++|+++...+ +.+ .|..... + +..+++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~-~-g~~~i~a~~ 160 (407)
T PRK06185 85 RTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTP-D-GPGEIRADL 160 (407)
T ss_pred eEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcC-C-CcEEEEeCE
Confidence 0 0 01111111111112345677888887777664 78888999999998776 333 2333321 1 225799999
Q ss_pred EEEccCCCCC
Q 013435 163 LIVATGENAE 172 (443)
Q Consensus 163 vIiAtG~~~~ 172 (443)
||.|+|.+|.
T Consensus 161 vI~AdG~~S~ 170 (407)
T PRK06185 161 VVGADGRHSR 170 (407)
T ss_pred EEECCCCchH
Confidence 9999998764
No 139
>PRK06753 hypothetical protein; Provisional
Probab=98.95 E-value=8.6e-09 Score=100.23 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=81.5
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-----C-------------------CCCceeeecCCcccc
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-----K-------------------TYDRLRLHLPKQFCQ 91 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-----~-------------------~~~~~~~~~~~~~~~ 91 (443)
+|+|||||++|+++|..|++.|++++|+|+.+.+...... + ....+....+... .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 7999999999999999999999999999998754311000 0 0000111000000 0
Q ss_pred CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCC
Q 013435 92 LPLMPFPSN-FPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 92 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~ 170 (443)
+....+... ......+..+.+.+.+.+. ...++++++|++++..+ +.+.|++.++ .++++|.||.|.|.+
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~~~~vigadG~~ 151 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENET--DKVTIHFADG-----ESEAFDLCIGADGIH 151 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecC--CcEEEEECCC-----CEEecCEEEECCCcc
Confidence 000011000 0112456777777766544 34678999999998765 6677877665 678999999999987
Q ss_pred CCCc
Q 013435 171 AEEV 174 (443)
Q Consensus 171 ~~p~ 174 (443)
|.-+
T Consensus 152 S~vR 155 (373)
T PRK06753 152 SKVR 155 (373)
T ss_pred hHHH
Confidence 6533
No 140
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.94 E-value=1.1e-08 Score=87.79 Aligned_cols=139 Identities=20% Similarity=0.241 Sum_probs=81.1
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc-ccccC-CCCceeeecCCccc-cCCCCCCCCCCCCC--C
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS-LWQLK-TYDRLRLHLPKQFC-QLPLMPFPSNFPTY--P 105 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~ 105 (443)
....+||+||||||+|++||+.|++.|++++++|++..+|| .|.-. .+..+.+..+.... +--..++.+.-.++ .
T Consensus 14 ~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~ 93 (230)
T PF01946_consen 14 DYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVA 93 (230)
T ss_dssp HHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES
T ss_pred hhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEE
Confidence 35678999999999999999999999999999999888775 68653 45555555443211 00011111111111 3
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEEee------cCCCcEEEEEeCEEEEccCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKTQQ------GLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~~~------~~~~~~~~i~a~~vIiAtG~~ 170 (443)
...++...+...+.+.|..++..+.|+++-..++ .++. |.++- +..-.+..+++++||-|||+-
T Consensus 94 d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 94 DSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp -HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred cHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 5677777777777778988988899988877663 2321 11111 111134799999999999963
No 141
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.94 E-value=5.9e-09 Score=101.76 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=83.1
Q ss_pred CeEEECCCHHHHHHHHHHHHcC-CCEEEEecCCCCCcc----------ccc--------CCCCce----------eeecC
Q 013435 36 GPVIVGAGPSGLATAACLTEKG-VPSLILERANCIASL----------WQL--------KTYDRL----------RLHLP 86 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~~~gg~----------w~~--------~~~~~~----------~~~~~ 86 (443)
||+||||||+|+++|..|+++| ++|+|+|+.+..... +.. ...+.+ .....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999997643210 000 000000 00000
Q ss_pred C--ccccCCCCCCCCCCCCC-CCHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCE
Q 013435 87 K--QFCQLPLMPFPSNFPTY-PTKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQW 162 (443)
Q Consensus 87 ~--~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~ 162 (443)
. ....+....+......+ ..+..+.+.+.+.+.. .+++++++++|+++...+ +.+.|++.++ ..++||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ad~ 153 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVRVTLDNG-----QQLRAKL 153 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEEEEECCC-----CEEEeeE
Confidence 0 00000000000000111 3567788888887777 488999999999998776 5677777654 5799999
Q ss_pred EEEccCCCCC
Q 013435 163 LIVATGENAE 172 (443)
Q Consensus 163 vIiAtG~~~~ 172 (443)
||.|+|.+|.
T Consensus 154 vV~AdG~~S~ 163 (382)
T TIGR01984 154 LIAADGANSK 163 (382)
T ss_pred EEEecCCChH
Confidence 9999998764
No 142
>PRK07538 hypothetical protein; Provisional
Probab=98.93 E-value=5.4e-08 Score=95.91 Aligned_cols=135 Identities=18% Similarity=0.169 Sum_probs=82.8
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc----c--ccc--------CCC----------CceeeecCCc--c
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS----L--WQL--------KTY----------DRLRLHLPKQ--F 89 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg----~--w~~--------~~~----------~~~~~~~~~~--~ 89 (443)
||+|||||++|+++|..|.++|++++|+|+.+.+.. . +.+ ..+ ..+....... .
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 799999999999999999999999999999875421 0 000 000 0000000000 0
Q ss_pred ccCCCCCCCCC--CCC-CCCHHHHHHHHHHHHHH-cCC-ccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEE
Q 013435 90 CQLPLMPFPSN--FPT-YPTKQQFLTYLETYTNH-FGL-DPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLI 164 (443)
Q Consensus 90 ~~~~~~~~~~~--~~~-~~~~~~~~~~l~~~~~~-~~~-~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vI 164 (443)
...+. ..... ++. ...+..+...+.+.+.+ .+. .++++++|++++..+ +...+...++..++..+++||.||
T Consensus 82 ~~~~~-~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~--~~~~~~~~~~~~g~~~~~~adlvI 158 (413)
T PRK07538 82 WSEPR-GLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDA--DVTVVFLGDRAGGDLVSVRGDVLI 158 (413)
T ss_pred eeccC-CcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecC--CceEEEEeccCCCccceEEeeEEE
Confidence 00000 00000 111 13577777777766544 453 588999999998776 334455555433444689999999
Q ss_pred EccCCCCCC
Q 013435 165 VATGENAEE 173 (443)
Q Consensus 165 iAtG~~~~p 173 (443)
.|.|.+|.-
T Consensus 159 gADG~~S~v 167 (413)
T PRK07538 159 GADGIHSAV 167 (413)
T ss_pred ECCCCCHHH
Confidence 999987753
No 143
>PRK07045 putative monooxygenase; Reviewed
Probab=98.92 E-value=1.9e-08 Score=98.29 Aligned_cols=135 Identities=21% Similarity=0.162 Sum_probs=83.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC---c---ccccC--------CC-----------CceeeecCCc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIA---S---LWQLK--------TY-----------DRLRLHLPKQ 88 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g---g---~w~~~--------~~-----------~~~~~~~~~~ 88 (443)
.+||+||||||+|+++|..|++.|++++|+|+.+... + .+... .. ..+.......
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 3689999999999999999999999999999977541 1 11110 00 0000000000
Q ss_pred -cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEE
Q 013435 89 -FCQLPLMPF-PSNFPTYPTKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIV 165 (443)
Q Consensus 89 -~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIi 165 (443)
...++.... ...+.....+..+.+.+.+.+.. .+++++++++|++++..++...+.|+..++ .++.+|.||.
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-----~~~~~~~vIg 159 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDG-----ERVAPTVLVG 159 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCC-----CEEECCEEEE
Confidence 000110000 00101113456777777776543 468899999999999876433345666654 5899999999
Q ss_pred ccCCCCCC
Q 013435 166 ATGENAEE 173 (443)
Q Consensus 166 AtG~~~~p 173 (443)
|+|.+|.-
T Consensus 160 ADG~~S~v 167 (388)
T PRK07045 160 ADGARSMI 167 (388)
T ss_pred CCCCChHH
Confidence 99987743
No 144
>PRK07588 hypothetical protein; Provisional
Probab=98.92 E-value=8.7e-09 Score=100.83 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=82.6
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC--c-c---cccC------------------CCCceeeecCCc--c
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIA--S-L---WQLK------------------TYDRLRLHLPKQ--F 89 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g--g-~---w~~~------------------~~~~~~~~~~~~--~ 89 (443)
||+|||||++|+++|..|+++|++|+|+|+.+... | . |... ....+....... .
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 79999999999999999999999999999976432 1 1 1110 000111100000 0
Q ss_pred ccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEc
Q 013435 90 CQLPLMPFPSNFP---TYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVA 166 (443)
Q Consensus 90 ~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiA 166 (443)
..++...+..... ....+..+...+.+... .+++++++++|++++..+ +.+.|++.++ ..+++|.||.|
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~~d~vIgA 153 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHR--DGVRVTFERG-----TPRDFDLVIGA 153 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEEEEECCC-----CEEEeCEEEEC
Confidence 0111000111110 11345666666655443 367899999999998876 6777877765 56899999999
Q ss_pred cCCCCCCc
Q 013435 167 TGENAEEV 174 (443)
Q Consensus 167 tG~~~~p~ 174 (443)
.|.+|.-+
T Consensus 154 DG~~S~vR 161 (391)
T PRK07588 154 DGLHSHVR 161 (391)
T ss_pred CCCCccch
Confidence 99877644
No 145
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.92 E-value=9.2e-09 Score=101.99 Aligned_cols=135 Identities=19% Similarity=0.240 Sum_probs=82.7
Q ss_pred CCeEEECCCHHHHHHHHHHHH----cCCCEEEEecCC--CCC--------ccccc----------------CCCCce---
Q 013435 35 PGPVIVGAGPSGLATAACLTE----KGVPSLILERAN--CIA--------SLWQL----------------KTYDRL--- 81 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~----~g~~v~iie~~~--~~g--------g~w~~----------------~~~~~~--- 81 (443)
|||+||||||+|+++|..|++ .|++|+|+|+.+ ... +.+.. ..++.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999998 799999999943 211 00000 001110
Q ss_pred --------eeecCCc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC---CccccceeEEEEEEe-----CCCCeE
Q 013435 82 --------RLHLPKQ--FCQLPLMPFPSNFPTYPTKQQFLTYLETYTNHFG---LDPVFNTTVVNAEYD-----HLSRLW 143 (443)
Q Consensus 82 --------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~v~~~~~V~~i~~~-----~~~~~~ 143 (443)
....... ...+.............+...+...+.+.+.+.+ ++++++++|++++.. ++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 0000000 0011100000000011356777777777777664 788999999999753 122556
Q ss_pred EEEEeecCCCcEEEEEeCEEEEccCCCCCCc
Q 013435 144 RVKTQQGLKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 144 ~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
.|+..++ .+++||+||.|.|.+|.-+
T Consensus 161 ~v~~~~g-----~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 161 HITLSDG-----QVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEEcCC-----CEEEeeEEEEecCCCChhH
Confidence 6777665 6899999999999877543
No 146
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.92 E-value=1.7e-08 Score=98.84 Aligned_cols=137 Identities=20% Similarity=0.189 Sum_probs=80.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC---C----cc-ccc--------C----------CCCceeeecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI---A----SL-WQL--------K----------TYDRLRLHLPK 87 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~---g----g~-w~~--------~----------~~~~~~~~~~~ 87 (443)
.+||+||||||+|+++|..|++.|++++|+|+.+.. + +. +.. . ....+......
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 579999999999999999999999999999998641 1 10 000 0 00111111011
Q ss_pred ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCccccceeEEEEEE-eCCCCeEEEEEeecCCCcEEEEEeCEEEE
Q 013435 88 QFCQLPLMPFPSNFP-TYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEY-DHLSRLWRVKTQQGLKQEETVYLCQWLIV 165 (443)
Q Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~-~~~~~~~~v~~~~~~~~~~~~i~a~~vIi 165 (443)
....++......... .......+.+.+.+.+...++.++++++|++++. ++ ....|+... +++..++++|+||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~--~~~~V~~~~--~G~~~~i~ad~vVg 157 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDS--DRPYVTYEK--DGEEHRLDCDFIAG 157 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCC--CceEEEEEc--CCeEEEEEeCEEEE
Confidence 100111100000000 0112345555565556667889999999999876 33 333455531 22346899999999
Q ss_pred ccCCCCCCc
Q 013435 166 ATGENAEEV 174 (443)
Q Consensus 166 AtG~~~~p~ 174 (443)
|.|.+|.-+
T Consensus 158 ADG~~S~vR 166 (392)
T PRK08243 158 CDGFHGVSR 166 (392)
T ss_pred CCCCCCchh
Confidence 999987543
No 147
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.91 E-value=1.2e-08 Score=99.52 Aligned_cols=61 Identities=25% Similarity=0.221 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
.....+...+.+.+.+.+++++.+++|++++.++ +.+.|.+.+ .++.+|.||+|+|.++..
T Consensus 142 i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~v~~~~------~~i~a~~vV~aaG~~~~~ 202 (380)
T TIGR01377 142 LYAEKALRALQELAEAHGATVRDGTKVVEIEPTE--LLVTVKTTK------GSYQANKLVVTAGAWTSK 202 (380)
T ss_pred EcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEEEEeCC------CEEEeCEEEEecCcchHH
Confidence 3556777778787888899999999999998766 666676654 479999999999986543
No 148
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.91 E-value=1.5e-08 Score=98.63 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 104 YPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
+.....+...+.+.+.+.+++++.+++|+++...+ +.+.|++++ ..+.+|.||+|+|.++....+
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~------g~~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADG--DGVTVTTAD------GTYEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeEEEEeCC------CEEEeeEEEEecCcchhhhcc
Confidence 34556666667677777899999999999999876 567777665 469999999999987654433
No 149
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.90 E-value=2.6e-08 Score=106.96 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=33.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANC 68 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~ 68 (443)
..+||+|||+|.+|+++|..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999999764
No 150
>PLN02661 Putative thiazole synthesis
Probab=98.90 E-value=1.1e-08 Score=95.71 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=80.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCCc-ccccCCC-CceeeecCC-ccccCCCCCCCCCCCCC---
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEK-GVPSLILERANCIAS-LWQLKTY-DRLRLHLPK-QFCQLPLMPFPSNFPTY--- 104 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~-g~~v~iie~~~~~gg-~w~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 104 (443)
...+||+|||||++|+++|+.|++. |++|+|+|+...+|| .|....+ ....+..+. .+..--..++... .+|
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~-dgy~vv 168 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ-ENYVVI 168 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC-CCeeEe
Confidence 4567999999999999999999986 899999999887765 5643221 111111100 0000001122111 111
Q ss_pred CCHHHHHHHHHHHH-HHcCCccccceeEEEEEEeCCCCeEEEEE------eecCC---CcEEEEEeCEEEEccCC
Q 013435 105 PTKQQFLTYLETYT-NHFGLDPVFNTTVVNAEYDHLSRLWRVKT------QQGLK---QEETVYLCQWLIVATGE 169 (443)
Q Consensus 105 ~~~~~~~~~l~~~~-~~~~~~v~~~~~V~~i~~~~~~~~~~v~~------~~~~~---~~~~~i~a~~vIiAtG~ 169 (443)
....++...+.+.+ .+.+++++.++.|+++-.+++ ...-|.. .++.. .++..++|++||+|||.
T Consensus 169 ~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~g-rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 169 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGD-RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred cchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCC-EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 13344445555544 446888989999988877552 2222221 12211 12357999999999995
No 151
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.90 E-value=3e-08 Score=99.94 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 107 KQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
...+...+...+.+.|..++.+++|+++...+ +.|.|++.++. ++..+++|+.||.|+|.|+.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREG--GLWRVETRDAD-GETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CEEEEEEEeCC-CCEEEEEecEEEECCCccHH
Confidence 34555556666788899999999999998876 66778777654 45578999999999998764
No 152
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.90 E-value=4.3e-08 Score=100.13 Aligned_cols=137 Identities=20% Similarity=0.346 Sum_probs=85.9
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc--------------CCCCce----------eee-cC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL--------------KTYDRL----------RLH-LP 86 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--------------~~~~~~----------~~~-~~ 86 (443)
...+||+||||||+|+++|..|.+.|++++|+|+.+......+. ...+.+ ... ..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD 100 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC
Confidence 36789999999999999999999999999999998754321110 000000 000 00
Q ss_pred CccccCCCCCCC-CCCCCC--CCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCE
Q 013435 87 KQFCQLPLMPFP-SNFPTY--PTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQW 162 (443)
Q Consensus 87 ~~~~~~~~~~~~-~~~~~~--~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~ 162 (443)
.....+...+.. ..++.+ .....+..++.+.+.+. +++++++++|++++.++ +.+.++.... . +..++++|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~-~-g~~~i~ad~ 176 (547)
T PRK08132 101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETP-D-GPYTLEADW 176 (547)
T ss_pred CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECC-C-CcEEEEeCE
Confidence 001111111100 001111 34567777888877765 67889999999998876 5665555431 1 225799999
Q ss_pred EEEccCCCCC
Q 013435 163 LIVATGENAE 172 (443)
Q Consensus 163 vIiAtG~~~~ 172 (443)
||.|+|.+|.
T Consensus 177 vVgADG~~S~ 186 (547)
T PRK08132 177 VIACDGARSP 186 (547)
T ss_pred EEECCCCCcH
Confidence 9999998764
No 153
>PRK05868 hypothetical protein; Validated
Probab=98.89 E-value=3.1e-08 Score=96.01 Aligned_cols=133 Identities=15% Similarity=0.112 Sum_probs=80.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc------ccc--------C----------CCCceeeecCCcc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL------WQL--------K----------TYDRLRLHLPKQF 89 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~------w~~--------~----------~~~~~~~~~~~~~ 89 (443)
|.||+|||||++|+++|..|++.|++++|+|+.+.+... +.. . .............
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 468999999999999999999999999999998754311 000 0 0011111100000
Q ss_pred c-cCCCCCCCCC--C--CC-CCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEE
Q 013435 90 C-QLPLMPFPSN--F--PT-YPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWL 163 (443)
Q Consensus 90 ~-~~~~~~~~~~--~--~~-~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~v 163 (443)
. .......+.. . +. ...+.++.+.+.+. ...+++++++++|++++.++ +.+.|+..++ .+++||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~-~~~~v~i~~~~~v~~i~~~~--~~v~v~~~dg-----~~~~adlv 152 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGA-TQPSVEYLFDDSISTLQDDG--DSVRVTFERA-----AAREFDLV 152 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHh-ccCCcEEEeCCEEEEEEecC--CeEEEEECCC-----CeEEeCEE
Confidence 0 0000000000 0 00 01244555544332 23477889999999998765 6677877765 57999999
Q ss_pred EEccCCCCCCc
Q 013435 164 IVATGENAEEV 174 (443)
Q Consensus 164 IiAtG~~~~p~ 174 (443)
|.|.|.+|.-+
T Consensus 153 IgADG~~S~vR 163 (372)
T PRK05868 153 IGADGLHSNVR 163 (372)
T ss_pred EECCCCCchHH
Confidence 99999887544
No 154
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.89 E-value=1.6e-08 Score=99.38 Aligned_cols=133 Identities=13% Similarity=0.129 Sum_probs=80.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecC-CC--CCcc--------ccc--------CCCCce-----------ee
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERA-NC--IASL--------WQL--------KTYDRL-----------RL 83 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~-~~--~gg~--------w~~--------~~~~~~-----------~~ 83 (443)
.+||+||||||+|+++|..|++.|++++|+|+. +. .+.. +.. ..++.+ ..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 479999999999999999999999999999985 21 1110 000 001111 01
Q ss_pred ecCCc--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEE
Q 013435 84 HLPKQ--FCQLPLMPFPS-NFPTYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYL 159 (443)
Q Consensus 84 ~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~ 159 (443)
..... ...+....... .+........+...+.+.+.+. +++++++++|++++.++ +.+.|+..++ ..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ 156 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAWLTLDNG-----QALT 156 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEEEEECCC-----CEEE
Confidence 00000 00000000000 0000123455556666655553 68888999999998776 5666777664 6899
Q ss_pred eCEEEEccCCCCCC
Q 013435 160 CQWLIVATGENAEE 173 (443)
Q Consensus 160 a~~vIiAtG~~~~p 173 (443)
||+||.|.|.+|.-
T Consensus 157 a~lvIgADG~~S~v 170 (405)
T PRK08850 157 AKLVVGADGANSWL 170 (405)
T ss_pred eCEEEEeCCCCChh
Confidence 99999999987643
No 155
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.89 E-value=1.3e-08 Score=92.09 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=96.6
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC---cc--------------------------cccCC-C-
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIA---SL--------------------------WQLKT-Y- 78 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g---g~--------------------------w~~~~-~- 78 (443)
.+.+..|++|||||..|+++|++|+++|.+++++|+.+.+. .. |++.. .
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~ 82 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEES 82 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhh
Confidence 45677899999999999999999999999999999976332 11 11100 0
Q ss_pred ------Cc--eeeecCC------------------------c-cccCC-CCCCCCCC-------CCCCCHHHHHHHHHHH
Q 013435 79 ------DR--LRLHLPK------------------------Q-FCQLP-LMPFPSNF-------PTYPTKQQFLTYLETY 117 (443)
Q Consensus 79 ------~~--~~~~~~~------------------------~-~~~~~-~~~~~~~~-------~~~~~~~~~~~~l~~~ 117 (443)
+. +.+..+. + --.+| ..+.++.+ .++.........+++.
T Consensus 83 g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~ 162 (399)
T KOG2820|consen 83 GVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDK 162 (399)
T ss_pred ceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHH
Confidence 00 0000000 0 00122 22333332 4556778888999999
Q ss_pred HHHcCCccccceeEEEEEEeCC-CCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCC
Q 013435 118 TNHFGLDPVFNTTVVNAEYDHL-SRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPY 177 (443)
Q Consensus 118 ~~~~~~~v~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~ 177 (443)
+.++|+.++.+..|..+...+. .....|.|.++ ..+.++.+|+|+|+|-...+|.
T Consensus 163 ~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~g-----s~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 163 ARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDG-----SIYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHcCeEEecCcceeeEeeccCCCceeEEEeccC-----CeeecceEEEEecHHHHhhcCc
Confidence 9999999999999988875432 24456777775 6799999999999976655553
No 156
>PRK06996 hypothetical protein; Provisional
Probab=98.89 E-value=2e-08 Score=98.46 Aligned_cols=134 Identities=14% Similarity=0.076 Sum_probs=84.3
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcC----CCEEEEecCCCCC---------------------cccccCCCC--ceeee
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKG----VPSLILERANCIA---------------------SLWQLKTYD--RLRLH 84 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g----~~v~iie~~~~~g---------------------g~w~~~~~~--~~~~~ 84 (443)
.+.+||+||||||+|+++|..|++.| ++|+|+|+.+... |.|.....+ .+...
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~ 88 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVS 88 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEe
Confidence 56689999999999999999999987 4799999975321 111110010 01000
Q ss_pred cCCc--cccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeC
Q 013435 85 LPKQ--FCQLPLMPFPSNFPT-YPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQ 161 (443)
Q Consensus 85 ~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~ 161 (443)
.... ...+....+.....+ ......+.+.+.+.+...++.+..++++++++... +.++++..++.+ ..+++||
T Consensus 89 ~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~--~~v~v~~~~~~g--~~~i~a~ 164 (398)
T PRK06996 89 QRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA--DGVTLALGTPQG--ARTLRAR 164 (398)
T ss_pred cCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC--CeEEEEECCCCc--ceEEeee
Confidence 0000 000000001001112 23567888888888888888888999999997766 667777654322 2579999
Q ss_pred EEEEccCC
Q 013435 162 WLIVATGE 169 (443)
Q Consensus 162 ~vIiAtG~ 169 (443)
+||.|+|.
T Consensus 165 lvIgADG~ 172 (398)
T PRK06996 165 IAVQAEGG 172 (398)
T ss_pred EEEECCCC
Confidence 99999995
No 157
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.88 E-value=1.8e-08 Score=98.54 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
....+.+.+.+.+.+.|++++++++|.+++..+ +.|.|.+.+ .++.||.||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~~V~~~~------g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGVVVRTTQ------GEYEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeEEEEECC------CEEEeCEEEECCCcch
Confidence 456777778888888899999999999998766 566677654 4799999999999865
No 158
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.87 E-value=2.4e-08 Score=97.85 Aligned_cols=133 Identities=18% Similarity=0.160 Sum_probs=80.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHc---CCCEEEEecCCCCC----c-------cccc--------CCCCcee--------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEK---GVPSLILERANCIA----S-------LWQL--------KTYDRLR-------- 82 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~---g~~v~iie~~~~~g----g-------~w~~--------~~~~~~~-------- 82 (443)
+.+||+||||||+|+++|..|+++ |++|+|+|+..... + .+.. ..++.+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence 357999999999999999999998 99999999952110 0 0000 0011100
Q ss_pred --eecCCcc--ccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEE
Q 013435 83 --LHLPKQF--CQLPLMPFPSNFPT-YPTKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEET 156 (443)
Q Consensus 83 --~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 156 (443)
....... ..+....+...... ......+...+.+.+.. .+++++++++|+++...+ +.+.|++.++ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~v~~~~g-----~ 154 (395)
T PRK05732 82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVRVTLDDG-----E 154 (395)
T ss_pred EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEEEEECCC-----C
Confidence 0000000 00000000000001 12345666666665554 368888999999998766 6677777654 5
Q ss_pred EEEeCEEEEccCCCCC
Q 013435 157 VYLCQWLIVATGENAE 172 (443)
Q Consensus 157 ~i~a~~vIiAtG~~~~ 172 (443)
.+.+|+||.|+|.++.
T Consensus 155 ~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 155 TLTGRLLVAADGSHSA 170 (395)
T ss_pred EEEeCEEEEecCCChh
Confidence 7999999999998664
No 159
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.86 E-value=3.4e-08 Score=96.43 Aligned_cols=138 Identities=21% Similarity=0.207 Sum_probs=78.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC------C-c-cccc--------CC----------CCceeeecC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI------A-S-LWQL--------KT----------YDRLRLHLP 86 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~------g-g-~w~~--------~~----------~~~~~~~~~ 86 (443)
+.+||+||||||+|+++|..|++.|++|+|+|+.+.. + + .+.. .. ...+.....
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD 80 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence 3579999999999999999999999999999998741 1 1 1100 00 000110000
Q ss_pred CccccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEe-ecCCCcEEEEEeCEEE
Q 013435 87 KQFCQLPLMPFPSNFPT-YPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQ-QGLKQEETVYLCQWLI 164 (443)
Q Consensus 87 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~i~a~~vI 164 (443)
.....++.......... ......+...+.+.+...++.++++.+++.+...++ ....|+.. ++ +..++++|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~-~~~~V~~~~~g---~~~~i~adlvI 156 (390)
T TIGR02360 81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAG-DRPYVTFERDG---ERHRLDCDFIA 156 (390)
T ss_pred CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCC-CccEEEEEECC---eEEEEEeCEEE
Confidence 00001110000000000 012345555566666667878888888777754221 33345554 33 22479999999
Q ss_pred EccCCCCCCc
Q 013435 165 VATGENAEEV 174 (443)
Q Consensus 165 iAtG~~~~p~ 174 (443)
.|.|.+|.-+
T Consensus 157 GADG~~S~VR 166 (390)
T TIGR02360 157 GCDGFHGVSR 166 (390)
T ss_pred ECCCCchhhH
Confidence 9999987543
No 160
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.86 E-value=6.5e-08 Score=99.78 Aligned_cols=143 Identities=20% Similarity=0.218 Sum_probs=85.5
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCCcc------cccC----------------CCC--ceeeecC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEK-GVPSLILERANCIASL------WQLK----------------TYD--RLRLHLP 86 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~-g~~v~iie~~~~~gg~------w~~~----------------~~~--~~~~~~~ 86 (443)
...+||+||||||+|+++|..|++. |++++|||+.+..... +... .+. .+....+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~ 109 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP 109 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence 3468999999999999999999995 9999999997643110 1000 000 0000000
Q ss_pred C-----ccc---cCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHcCC--ccccceeEEEEEEeCC-CCeEEEEEeecC--
Q 013435 87 K-----QFC---QLPLMPFP-SNFP-TYPTKQQFLTYLETYTNHFGL--DPVFNTTVVNAEYDHL-SRLWRVKTQQGL-- 151 (443)
Q Consensus 87 ~-----~~~---~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~--~v~~~~~V~~i~~~~~-~~~~~v~~~~~~-- 151 (443)
. ... .+...... ..++ ...+...+.+.+.+.+.+.+. .+++++++++++.+++ ...++|+..+..
T Consensus 110 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 110 DPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 0 000 00000000 0011 123456677778877777654 5678999999987642 134566665431
Q ss_pred -CCcEEEEEeCEEEEccCCCCCCc
Q 013435 152 -KQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 152 -~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
+++..+++||+||.|.|.+|.-+
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~VR 213 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSRVR 213 (634)
T ss_pred CCCceEEEEeCEEEECCCCchHHH
Confidence 23447899999999999987543
No 161
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.86 E-value=2.1e-08 Score=95.64 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=80.5
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC--cccccCCCC-------ceeeecCC-------------------
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIA--SLWQLKTYD-------RLRLHLPK------------------- 87 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g--g~w~~~~~~-------~~~~~~~~------------------- 87 (443)
||+|||+|.+||++|..|.+. ++|+|+.|.+... +.|.|.... +...+...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999988 9999999977442 355553110 00000000
Q ss_pred ----c-----cccCCCCCCCCC-----------------CCCCCCHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCC
Q 013435 88 ----Q-----FCQLPLMPFPSN-----------------FPTYPTKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLS 140 (443)
Q Consensus 88 ----~-----~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~ 140 (443)
. ....++-...+. ..+ .++.++...|.+.+.+ .+++++.+..+.++-.++.
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~- 165 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-ATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG- 165 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-CccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC-
Confidence 0 000011100000 012 5778888888887765 6788877877777766552
Q ss_pred CeE-EEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 141 RLW-RVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 141 ~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
... -+.+.+... +...++++.||+|||..+
T Consensus 166 ~~~~Gv~~~~~~~-~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 166 IGVAGVLVLNRNG-ELGTFRAKAVVLATGGLG 196 (518)
T ss_pred ceEeEEEEecCCC-eEEEEecCeEEEecCCCc
Confidence 122 233332211 347999999999999744
No 162
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.85 E-value=6.8e-08 Score=97.34 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 108 QQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 108 ~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
..+...+...+.+.|+.++.+++|+++..++ +.|.|++.+...++...++++.||+|+|.|+.
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARREN--GLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 3444455556778899999999999998765 66777776533344468999999999998764
No 163
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.85 E-value=3.4e-08 Score=96.39 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=80.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC--C--Ccc--------ccc--------CCCCceeee--cCC----
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANC--I--ASL--------WQL--------KTYDRLRLH--LPK---- 87 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~--~--gg~--------w~~--------~~~~~~~~~--~~~---- 87 (443)
.+||+||||||+|+++|..|++.|++|+|+|+.+. . .+. +.. ..++.+... .+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 36999999999999999999999999999998641 1 000 110 011111000 000
Q ss_pred ------ccccCCCCCCCCCCCCC-CCHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEE
Q 013435 88 ------QFCQLPLMPFPSNFPTY-PTKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYL 159 (443)
Q Consensus 88 ------~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~ 159 (443)
....+..........++ .....+...+.+.+.. .+++++.+++|++++.++ +.+.|+..++ .+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~~v~~~~g-----~~~~ 155 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGNRVTLESG-----AEIE 155 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeEEEEECCC-----CEEE
Confidence 00000000000000011 1223444455454444 357888999999998876 5667877765 6899
Q ss_pred eCEEEEccCCCCCCc
Q 013435 160 CQWLIVATGENAEEV 174 (443)
Q Consensus 160 a~~vIiAtG~~~~p~ 174 (443)
+|.||.|+|.+|.-+
T Consensus 156 ~~lvIgADG~~S~vR 170 (384)
T PRK08849 156 AKWVIGADGANSQVR 170 (384)
T ss_pred eeEEEEecCCCchhH
Confidence 999999999877543
No 164
>PRK07236 hypothetical protein; Provisional
Probab=98.85 E-value=3.5e-08 Score=96.34 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=78.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC----Cc-c--ccc--------CCCCceeeecCCc---cccCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI----AS-L--WQL--------KTYDRLRLHLPKQ---FCQLPL 94 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~----gg-~--w~~--------~~~~~~~~~~~~~---~~~~~~ 94 (443)
+.++|+|||||++|+++|..|++.|++++|+|+.+.. |+ . +.. ...+......+.. +.....
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3478999999999999999999999999999997632 11 0 000 0000000000000 000000
Q ss_pred CCCC-CCCC-CCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 95 MPFP-SNFP-TYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 95 ~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.... .... .......+.+.+.+.. .+..++++++|++++..+ +.++|+..++ .++++|.||.|.|.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDG--DRVTARFADG-----RRETADLLVGADGGRST 155 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecC--CeEEEEECCC-----CEEEeCEEEECCCCCch
Confidence 0000 0000 1123344444443322 134588999999998876 6677877765 68999999999998776
Q ss_pred Cc
Q 013435 173 EV 174 (443)
Q Consensus 173 p~ 174 (443)
.+
T Consensus 156 vR 157 (386)
T PRK07236 156 VR 157 (386)
T ss_pred HH
Confidence 44
No 165
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.83 E-value=5.4e-08 Score=95.91 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
....+...+.+.+.+.|++++.+++|++++..+ +.|.+.+.++...+..+++|++||+|+|.++.
T Consensus 195 ~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 345566667777888899999999999998766 56666554421111247999999999998764
No 166
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.83 E-value=4.8e-08 Score=99.26 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=84.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc-ccccC-------CCC--c----------------------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS-LWQLK-------TYD--R---------------------- 80 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~-------~~~--~---------------------- 80 (443)
..+||+|||||..|+++|+.|++.|++|+|+|+.+..+| ++... .|. .
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~ 84 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV 84 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhh
Confidence 358999999999999999999999999999999764332 22221 110 0
Q ss_pred -----eeeecCC-cc------c---cCCCCC------------CCC---C-------CCCCCCHHHHHHHHHHHHHHcCC
Q 013435 81 -----LRLHLPK-QF------C---QLPLMP------------FPS---N-------FPTYPTKQQFLTYLETYTNHFGL 123 (443)
Q Consensus 81 -----~~~~~~~-~~------~---~~~~~~------------~~~---~-------~~~~~~~~~~~~~l~~~~~~~~~ 123 (443)
+.+..+. .. + .....+ +|. . ..+......+...+...+.+.|+
T Consensus 85 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~~~Ga 164 (546)
T PRK11101 85 EPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGA 164 (546)
T ss_pred cccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHHhCCC
Confidence 0000000 00 0 000000 000 0 01123445555556667778899
Q ss_pred ccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 124 DPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 124 ~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+++++++|+++..+++ ..+.|++.+...++...++|+.||+|+|.|+.
T Consensus 165 ~i~~~t~V~~i~~~~~-~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 165 QILTYHEVTGLIREGD-TVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred EEEeccEEEEEEEcCC-eEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 9999999999988652 22335554433333468999999999998753
No 167
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.82 E-value=4.5e-08 Score=72.28 Aligned_cols=79 Identities=25% Similarity=0.290 Sum_probs=66.1
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTYLE 115 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (443)
+++|||||+.|+.+|..|.+.|.+++++++.+.+.. ....++..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~---------------------------------~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP---------------------------------GFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST---------------------------------TSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh---------------------------------hcCHHHHHHHH
Confidence 489999999999999999999999999999885420 12377788888
Q ss_pred HHHHHcCCccccceeEEEEEEeCCCCeEEEEEee
Q 013435 116 TYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQ 149 (443)
Q Consensus 116 ~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~ 149 (443)
+..++.++++++++.+.+++.+++ .+.|++++
T Consensus 48 ~~l~~~gV~v~~~~~v~~i~~~~~--~~~V~~~~ 79 (80)
T PF00070_consen 48 EYLRKRGVEVHTNTKVKEIEKDGD--GVEVTLED 79 (80)
T ss_dssp HHHHHTTEEEEESEEEEEEEEETT--SEEEEEET
T ss_pred HHHHHCCCEEEeCCEEEEEEEeCC--EEEEEEec
Confidence 888888999999999999999884 35577665
No 168
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.81 E-value=3.1e-08 Score=99.31 Aligned_cols=131 Identities=17% Similarity=0.203 Sum_probs=77.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCcccccCCCCcee----e---ecCCc---------cccCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN-CIASLWQLKTYDRLR----L---HLPKQ---------FCQLPLM 95 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~~~~~~~~----~---~~~~~---------~~~~~~~ 95 (443)
..|||+|||||+||+.+|..+++.|.+|+++|+.. .+|+..+.....+.. . +.... ..++...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 35899999999999999999999999999999973 455322221111100 0 00000 0011100
Q ss_pred CC---CCCCC--CCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 96 PF---PSNFP--TYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 96 ~~---~~~~~--~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.. +..+. ....+..+...+.+.+.+. ++.+ +...|+++..+++ ....|.+.++ ..+.|+.||+|||.
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~g-rV~GV~t~dG-----~~I~Ak~VIlATGT 155 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVENG-RVVGVVTQDG-----LEFRAKAVVLTTGT 155 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecCC-EEEEEEECCC-----CEEECCEEEEeeCc
Confidence 00 00000 0124455666776666654 6665 4567888776552 2233666654 68999999999996
Q ss_pred C
Q 013435 170 N 170 (443)
Q Consensus 170 ~ 170 (443)
+
T Consensus 156 F 156 (618)
T PRK05192 156 F 156 (618)
T ss_pred c
Confidence 4
No 169
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.80 E-value=7.2e-08 Score=94.62 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=83.5
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc------ccc--------CCCCce----------eeecCCcc-
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL------WQL--------KTYDRL----------RLHLPKQF- 89 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~------w~~--------~~~~~~----------~~~~~~~~- 89 (443)
.+|+|||||++|+++|..|++.|++|+|+|+.+.+... +.+ ..++.+ ........
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 57999999999999999999999999999998754210 000 000000 00000000
Q ss_pred --ccCCCCCCCC--CCCCC--CCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCE
Q 013435 90 --CQLPLMPFPS--NFPTY--PTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQW 162 (443)
Q Consensus 90 --~~~~~~~~~~--~~~~~--~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~ 162 (443)
.......... ....+ ..+..+.+.|.+.+... +++++++++|++++..+ +.+.++..++.+ ..++.+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~v~~~~~~~--~~~~~adl 158 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSITATIIRTNS--VETVSAAY 158 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceEEEEEeCCC--CcEEecCE
Confidence 0000000000 00111 35677888887766553 67889999999998766 566666543221 15799999
Q ss_pred EEEccCCCCCCc
Q 013435 163 LIVATGENAEEV 174 (443)
Q Consensus 163 vIiAtG~~~~p~ 174 (443)
||.|.|.+|.-+
T Consensus 159 vIgADG~~S~vR 170 (400)
T PRK06475 159 LIACDGVWSMLR 170 (400)
T ss_pred EEECCCccHhHH
Confidence 999999987543
No 170
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.79 E-value=1.8e-07 Score=93.01 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=84.1
Q ss_pred CeEEECCCHHHHHHHHHHHHcC-CCEEEEecCCCCCccccc--------CC-------C-Ccee-------------ee-
Q 013435 36 GPVIVGAGPSGLATAACLTEKG-VPSLILERANCIASLWQL--------KT-------Y-DRLR-------------LH- 84 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~~--------~~-------~-~~~~-------------~~- 84 (443)
||||||+|.+|+++|.+++++| .+|+|+|+.+..||.... .. . .... .+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999998876653211 00 0 0000 00
Q ss_pred --------cC-C--ccc--cCCC----------CCCCCC-C--CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeC
Q 013435 85 --------LP-K--QFC--QLPL----------MPFPSN-F--PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDH 138 (443)
Q Consensus 85 --------~~-~--~~~--~~~~----------~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~ 138 (443)
.. . .+. .+.. ..++.. . ........+...+.+.+.+.++++++++.|+++..++
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~ 160 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD 160 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECC
Confidence 00 0 000 0000 000000 0 0113456788888888899999999999999998764
Q ss_pred CCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 139 LSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+...+-|..... .++...+.++.||+|||.++.
T Consensus 161 ~g~v~Gv~~~~~-~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 161 QGTVVGVVVKGK-GKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCcEEEEEEEeC-CCeEEEEecceEEEecCCCCC
Confidence 323333443321 223356899999999997654
No 171
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.79 E-value=4e-08 Score=98.09 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
.....+...+.+.+.+.|++++.++.|++++. + ..+.|++.+ .+++|+.||+|+|.++....
T Consensus 180 i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~~~v~t~~------g~v~A~~VV~Atga~s~~l~ 241 (460)
T TIGR03329 180 VQPGLLVRGLRRVALELGVEIHENTPMTGLEE-G--QPAVVRTPD------GQVTADKVVLALNAWMASHF 241 (460)
T ss_pred ECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C--CceEEEeCC------cEEECCEEEEcccccccccC
Confidence 34566777777788888999999999999975 2 446677665 46999999999998765433
No 172
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.78 E-value=7.5e-08 Score=92.63 Aligned_cols=136 Identities=24% Similarity=0.251 Sum_probs=87.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCcccc-c-------CC-CC----------------------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASLWQ-L-------KT-YD---------------------- 79 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~-~-------~~-~~---------------------- 79 (443)
+.|||+|||||..|+++|+.|.+.+ ++|+|+||.+.+|.... + .. |+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 99999999987653111 1 11 10
Q ss_pred ---------ceeeecCCc-c------------ccCCCC------------CCCC--C-------CCCCCCHHHHHHHHHH
Q 013435 80 ---------RLRLHLPKQ-F------------CQLPLM------------PFPS--N-------FPTYPTKQQFLTYLET 116 (443)
Q Consensus 80 ---------~~~~~~~~~-~------------~~~~~~------------~~~~--~-------~~~~~~~~~~~~~l~~ 116 (443)
.+.+-.... . ..+... |.-. . ..+.....++...+..
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 000000000 0 000000 0000 0 0123345666667777
Q ss_pred HHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 117 YTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 117 ~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
.+.+.|..++++++|+.|+...+ +.+.+.+.++ +++ ++|+.||.|.|.++.+
T Consensus 162 ~a~~~g~~i~ln~eV~~i~~~~d-g~~~~~~~~g---~~~-~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 162 EAQANGVELRLNTEVTGIEKQSD-GVFVLNTSNG---EET-LEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHcCCEEEecCeeeEEEEeCC-ceEEEEecCC---cEE-EEeeEEEECCchhHHH
Confidence 77777999999999999999884 2555666654 223 9999999999986543
No 173
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.77 E-value=5.5e-08 Score=94.29 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=32.0
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANC 68 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~ 68 (443)
+||+|||||++|+++|++|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999763
No 174
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.77 E-value=2.1e-07 Score=93.80 Aligned_cols=137 Identities=19% Similarity=0.165 Sum_probs=83.4
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc--------CC-C-------Cc---eeee---------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL--------KT-Y-------DR---LRLH--------- 84 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--------~~-~-------~~---~~~~--------- 84 (443)
..+||||||+|.+|+++|+.+++.|.+|+|+|+.+..||.-.. .. + +. +.-+
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999998877652110 00 0 00 0000
Q ss_pred ----------cCCc---c---cc--CCC------CCCCCCC-C--CCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEe
Q 013435 85 ----------LPKQ---F---CQ--LPL------MPFPSNF-P--TYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYD 137 (443)
Q Consensus 85 ----------~~~~---~---~~--~~~------~~~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~ 137 (443)
.... + .. +.. ...+... + .......+...+.+.+.+.++++++++.|+++..+
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~ 219 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK 219 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec
Confidence 0000 0 00 000 0000000 0 11233567777778888889999999999999865
Q ss_pred CCCCeE-EEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 138 HLSRLW-RVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 138 ~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+ +.+ -|..... +++...+.++.||+|+|.++.
T Consensus 220 ~--g~V~Gv~~~~~-~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 220 D--GKVTGVKVKIN-GKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred C--CEEEEEEEEeC-CCeEEEEecCeEEEeCCCccc
Confidence 4 332 2333221 223367999999999997543
No 175
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.76 E-value=5.9e-09 Score=102.80 Aligned_cols=131 Identities=19% Similarity=0.234 Sum_probs=35.2
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeec-------------CCccccCCCCCCCC--C
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHL-------------PKQFCQLPLMPFPS--N 100 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~-------------~~~~~~~~~~~~~~--~ 100 (443)
||||||||++|+++|..+++.|.+|+|+|+...+||...........-.. ............+. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 79999999999999999999999999999999999866543211110000 00000100000000 0
Q ss_pred C--CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 101 F--PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 101 ~--~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+ ........+...+.+.+.+.|+++++++.|.++..+++ ....|.+.+.. +..+++|+.+|-|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~-~i~~V~~~~~~--g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGG-RITGVIVETKS--GRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-ccccccccccc--cccccccccccccccc
Confidence 0 01234455666677777778999999999999988752 22334444311 2489999999999994
No 176
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.75 E-value=8.2e-08 Score=94.70 Aligned_cols=128 Identities=19% Similarity=0.194 Sum_probs=78.6
Q ss_pred CeEEECCCHHHHHHHHHHHHcC-CCEEEEecCCCCCcc------cccC--------CCCcee--ee---cC--CccccCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKG-VPSLILERANCIASL------WQLK--------TYDRLR--LH---LP--KQFCQLP 93 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~~~gg~------w~~~--------~~~~~~--~~---~~--~~~~~~~ 93 (443)
+|+|||||++|+++|..|.++| .+|+|+|+.+.++.. +.+. ..+.+. .. .. .....+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 599999998765421 1110 000000 00 00 0000000
Q ss_pred --------CCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEE
Q 013435 94 --------LMPFPSNFP-TYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLI 164 (443)
Q Consensus 94 --------~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vI 164 (443)
......... ....+.++.+.+.+.+. ...++++++|++++..+ +.|.|+..++ .++++|.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ad~vV 152 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQA--EEVQVLFTDG-----TEYRCDLLI 152 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecC--CcEEEEEcCC-----CEEEeeEEE
Confidence 000000001 11345666666665542 23467899999998876 6688887765 579999999
Q ss_pred EccCCCCC
Q 013435 165 VATGENAE 172 (443)
Q Consensus 165 iAtG~~~~ 172 (443)
.|+|.+|.
T Consensus 153 gADG~~S~ 160 (414)
T TIGR03219 153 GADGIKSA 160 (414)
T ss_pred ECCCccHH
Confidence 99998775
No 177
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.75 E-value=1.8e-07 Score=92.77 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 106 TKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
....+.+.+.+.+.+ .+++++++++|++++..++ +.|.+...+...++..+++||+||+|+|+++.
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGWEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCEEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 344555555555543 4788999999999987732 67877643211122236999999999999774
No 178
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.74 E-value=1.5e-07 Score=94.78 Aligned_cols=140 Identities=19% Similarity=0.144 Sum_probs=83.9
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc--------ccccCCCCce-eeecCCc--------------
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS--------LWQLKTYDRL-RLHLPKQ-------------- 88 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg--------~w~~~~~~~~-~~~~~~~-------------- 88 (443)
...+||||||+|.||+.+|..+++.|.+|+++||....+| .|....-... .-+++..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 4568999999999999999999999999999999775443 2222100000 0000000
Q ss_pred --------------c-----ccCCCCCCCC----------------CCCCCCCHHHHHHHHHHHHHH-cCCccccceeEE
Q 013435 89 --------------F-----CQLPLMPFPS----------------NFPTYPTKQQFLTYLETYTNH-FGLDPVFNTTVV 132 (443)
Q Consensus 89 --------------~-----~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~V~ 132 (443)
. +..++...++ .+....+...+...+.+...+ .++++..+..+.
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~ 163 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL 163 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 0 0111111111 112234567777777776666 445566667777
Q ss_pred EEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 133 NAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 133 ~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
++-.+++....-+..-+..+++...++++.||+|||...
T Consensus 164 ~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 164 DLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred hheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 776554322333444444445667889999999999765
No 179
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.74 E-value=1.1e-07 Score=93.51 Aligned_cols=62 Identities=15% Similarity=0.035 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.....+...+...+.+.|++++.+++|++++..++...+.|++.+ ..+.++.||+|+|.++.
T Consensus 180 v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~------g~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 180 ARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR------GFIGAKKVGVAVAGHSS 241 (407)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC------ceEECCEEEECCChhhH
Confidence 344555566667778889999999999999865332444566665 46999999999998653
No 180
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.71 E-value=9.8e-08 Score=95.01 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHH----cC--CccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 105 PTKQQFLTYLETYTNH----FG--LDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~----~~--~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.....+...+.+.+.+ .| ++++++++|++|+..++ +.|.|++.+ .+++|++||+|+|.|+.
T Consensus 208 Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-~~~~V~T~~------G~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 208 VDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSND-SLYKIHTNR------GEIRARFVVVSACGYSL 274 (497)
T ss_pred ECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-CeEEEEECC------CEEEeCEEEECcChhHH
Confidence 3456677777777777 67 66789999999998743 578888775 47999999999998764
No 181
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.71 E-value=2.2e-07 Score=91.79 Aligned_cols=135 Identities=22% Similarity=0.225 Sum_probs=82.0
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-------C--C-------Cceee------e-cC----C-
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-------T--Y-------DRLRL------H-LP----K- 87 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-------~--~-------~~~~~------~-~~----~- 87 (443)
||||||+|.+|+++|+.++++|.+|+|+|+.+..||..... . . +.... . .. .
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 89999999999999999999999999999998766532110 0 0 00000 0 00 0
Q ss_pred --------------ccccCCCCCCCC----------------C------CC-----CCCCHHHHHHHHHHHHHHcCCccc
Q 013435 88 --------------QFCQLPLMPFPS----------------N------FP-----TYPTKQQFLTYLETYTNHFGLDPV 126 (443)
Q Consensus 88 --------------~~~~~~~~~~~~----------------~------~~-----~~~~~~~~~~~l~~~~~~~~~~v~ 126 (443)
.+... ..++.. . .. .......+...+.+.+++.+++++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~ 159 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEEL-GVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIR 159 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHT-T--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEE
T ss_pred hhhhhhhcccceehhhhhh-cccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeee
Confidence 00000 000000 0 00 012467788889999999999999
Q ss_pred cceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 127 FNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 127 ~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+++.++++..+++ ...-|...+...++...+.|+.||+|||.++.
T Consensus 160 ~~~~~~~Li~e~g-~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 160 FNTRVTDLITEDG-RVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp ESEEEEEEEEETT-EEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred ccceeeeEEEeCC-ceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 9999999999763 22234444344556679999999999997554
No 182
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.70 E-value=2.3e-07 Score=95.54 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeC-CCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDH-LSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
....+...+...+.+.|+.++.+++|+++..++ +...+.|...+...++..++.++.||+|+|.|+.
T Consensus 230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 455666677777888899999999999998763 2234445554333334357999999999998754
No 183
>PLN02985 squalene monooxygenase
Probab=98.69 E-value=3.5e-07 Score=92.01 Aligned_cols=141 Identities=19% Similarity=0.162 Sum_probs=79.7
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc-ccccC-------------C-----------CCceeee
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS-LWQLK-------------T-----------YDRLRLH 84 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~-------------~-----------~~~~~~~ 84 (443)
.....+||+|||||++|+++|..|++.|.+|+|+|+...... .+... . ..++...
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~ 118 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVY 118 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEE
Confidence 346778999999999999999999999999999999753211 01100 0 0011110
Q ss_pred cCCc--cccCCCCC--CCCCCC-CCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEE
Q 013435 85 LPKQ--FCQLPLMP--FPSNFP-TYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVY 158 (443)
Q Consensus 85 ~~~~--~~~~~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i 158 (443)
.... ...++... ++.... ....+..+...+.+.+.+. ++++..+ .|+++..+++ ....|+.... .++..++
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~-~v~gV~~~~~-dG~~~~~ 195 (514)
T PLN02985 119 KDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKG-VIKGVTYKNS-AGEETTA 195 (514)
T ss_pred ECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCC-EEEEEEEEcC-CCCEEEE
Confidence 0000 00111000 000000 1234567888888777665 5666654 4666655441 2222443321 2244578
Q ss_pred EeCEEEEccCCCCCC
Q 013435 159 LCQWLIVATGENAEE 173 (443)
Q Consensus 159 ~a~~vIiAtG~~~~p 173 (443)
.||.||.|+|.+|.-
T Consensus 196 ~AdLVVgADG~~S~v 210 (514)
T PLN02985 196 LAPLTVVCDGCYSNL 210 (514)
T ss_pred ECCEEEECCCCchHH
Confidence 899999999987753
No 184
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.69 E-value=4.6e-07 Score=90.78 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=81.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC--CCccccc--C---CCC---ceee--ecCCccc----------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANC--IASLWQL--K---TYD---RLRL--HLPKQFC---------- 90 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~--~gg~w~~--~---~~~---~~~~--~~~~~~~---------- 90 (443)
..+||||||+|++|+++|..+++.|.+|+|+||.+. .||.... . ... .... ..+..++
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 357999999999999999999999999999999863 4442110 0 000 0000 0000000
Q ss_pred -----------------c-C--CCCCCCCCCCC-----------CCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCC
Q 013435 91 -----------------Q-L--PLMPFPSNFPT-----------YPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHL 139 (443)
Q Consensus 91 -----------------~-~--~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~ 139 (443)
. + ...++...... ......+...+.+.+++.+++++++++|+++..+++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g 162 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG 162 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC
Confidence 0 0 00000000000 001356777788888888999999999999987542
Q ss_pred CCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 140 SRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 140 ~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
..+-|.... ..++...++++.||+|||.+.
T Consensus 163 -~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 163 -RFVGARAGS-AAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred -eEEEEEEEc-cCCceEEEECCEEEECCCCCC
Confidence 223344321 122346789999999999654
No 185
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.69 E-value=2.8e-07 Score=92.02 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
....+...+.+.+.+.|++++++++|++++..++ +.|.+++.+...++..+++|++||+|+|.++.
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeEEEEEeeccCCceEEEECCEEEECCCcchH
Confidence 4566777777777778999999999999987542 45777654322233357999999999998764
No 186
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.67 E-value=3.3e-07 Score=95.64 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
.....+...+.+.+.+ |++++++++|++++..+ +.|.|.+.++ ..++++.||+|+|.++..
T Consensus 405 v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~v~t~~g-----~~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 405 LCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQLDFAGG-----TLASAPVVVLANGHDAAR 465 (662)
T ss_pred eCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEEEEECCC-----cEEECCEEEECCCCCccc
Confidence 4556677777777777 88999999999998876 6787877654 567899999999987653
No 187
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.66 E-value=1.6e-07 Score=90.67 Aligned_cols=139 Identities=19% Similarity=0.181 Sum_probs=80.3
Q ss_pred CeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCc--ccccCCCCce--e---e------ecCCccccCCCCC--CC
Q 013435 36 GPVIVGAGPSGLATAACLTEK--GVPSLILERANCIAS--LWQLKTYDRL--R---L------HLPKQFCQLPLMP--FP 98 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg--~w~~~~~~~~--~---~------~~~~~~~~~~~~~--~~ 98 (443)
||+|||||++|+++|..|.+. |++|+++|+.+..++ +|..-..+-. . + ..+......+... ..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999887776 3432110000 0 0 0000000000000 00
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCC
Q 013435 99 SNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYI 178 (443)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~ 178 (443)
.. -....+.++.+++.+.+ +..++++.+|++++ . +. |++.++ .+++|+.||.|.|..+. .+..
T Consensus 81 ~~-Y~~I~r~~f~~~l~~~l---~~~i~~~~~V~~v~--~--~~--v~l~dg-----~~~~A~~VI~A~G~~s~--~~~~ 143 (370)
T TIGR01789 81 TA-YRSMTSTRFHEGLLQAF---PEGVILGRKAVGLD--A--DG--VDLAPG-----TRINARSVIDCRGFKPS--AHLK 143 (370)
T ss_pred CC-ceEEEHHHHHHHHHHhh---cccEEecCEEEEEe--C--CE--EEECCC-----CEEEeeEEEECCCCCCC--cccc
Confidence 00 01235567777765443 22366688888883 2 33 444454 78999999999996532 1222
Q ss_pred CCCCCCcccEeec
Q 013435 179 EGMDGFRGPIFHS 191 (443)
Q Consensus 179 ~g~~~~~~~~~~~ 191 (443)
.+...+.|..+.+
T Consensus 144 ~~~Q~f~G~~~r~ 156 (370)
T TIGR01789 144 GGFQVFLGREMRL 156 (370)
T ss_pred ceeeEEEEEEEEE
Confidence 4555555555544
No 188
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.65 E-value=2.7e-07 Score=85.78 Aligned_cols=143 Identities=20% Similarity=0.245 Sum_probs=89.2
Q ss_pred HhhhhcCCCeEEECCCHHHHHHHHHHHHc------CCCEEEEecCCCCCcccccC------C----CCc-----------
Q 013435 28 AARRIMVPGPVIVGAGPSGLATAACLTEK------GVPSLILERANCIASLWQLK------T----YDR----------- 80 (443)
Q Consensus 28 ~~~~~~~~dvvIIG~G~aGl~~A~~l~~~------g~~v~iie~~~~~gg~w~~~------~----~~~----------- 80 (443)
.++.+..+||+||||||+|+++|.+|.+. .++|+++|+...+||..-.. . .+.
T Consensus 70 ~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~ 149 (621)
T KOG2415|consen 70 MERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTP 149 (621)
T ss_pred chhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccc
Confidence 46778999999999999999999999875 36999999999888742221 0 000
Q ss_pred -----eeeecCCccccCCCC-CCCCCCCCC-CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeec---
Q 013435 81 -----LRLHLPKQFCQLPLM-PFPSNFPTY-PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQG--- 150 (443)
Q Consensus 81 -----~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~--- 150 (443)
+...........|.. ++. ....| .+-.++..++-+.++.+|+++.-+..+.++-.+++....-|.+++-
T Consensus 150 vT~d~~~fLt~~~~i~vPv~~pm~-NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 150 VTSDKFKFLTGKGRISVPVPSPMD-NHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred ccccceeeeccCceeecCCCcccc-cCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccccc
Confidence 000111110111111 111 11122 3668899999999999999986666666666655433333444321
Q ss_pred CCCc-------EEEEEeCEEEEccCCCC
Q 013435 151 LKQE-------ETVYLCQWLIVATGENA 171 (443)
Q Consensus 151 ~~~~-------~~~i~a~~vIiAtG~~~ 171 (443)
+.|. --+++|+..|.|-|++.
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred CCCCccccccccceecceeEEEeccccc
Confidence 1111 14899999999999854
No 189
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.65 E-value=6e-07 Score=88.32 Aligned_cols=138 Identities=15% Similarity=0.221 Sum_probs=90.4
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC--C-CCc-----------------------------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK--T-YDR----------------------------- 80 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--~-~~~----------------------------- 80 (443)
..+||+|||||+.|+.+|+.++.+|++|+++|+.+.-.|+...+ + +.+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 78999999999999999999999999999999998655543321 0 000
Q ss_pred ------eeeecC--Cc---------cc-cCCCC----C-------------CC----CCCC-C------CCCHHHHHHHH
Q 013435 81 ------LRLHLP--KQ---------FC-QLPLM----P-------------FP----SNFP-T------YPTKQQFLTYL 114 (443)
Q Consensus 81 ------~~~~~~--~~---------~~-~~~~~----~-------------~~----~~~~-~------~~~~~~~~~~l 114 (443)
+....+ .. .+ .+.+. + .| +... . ......+.-..
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~ 170 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN 170 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence 000000 00 00 00000 0 00 0000 0 01122333344
Q ss_pred HHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 115 ETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 115 ~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
...+...|..+...++|+++..++ +.|-|...+..+++...++|+.||.|||.|+.
T Consensus 171 a~~A~~~Ga~il~~~~v~~~~re~--~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 171 ARDAAEHGAEILTYTRVESLRREG--GVWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred HHHHHhcccchhhcceeeeeeecC--CEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 455677788899999999999988 57778888877778899999999999998754
No 190
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.62 E-value=6.7e-07 Score=90.86 Aligned_cols=140 Identities=16% Similarity=0.106 Sum_probs=85.0
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccc--cCCC-------Ccee-------------ee-----
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQ--LKTY-------DRLR-------------LH----- 84 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~--~~~~-------~~~~-------------~~----- 84 (443)
...+||+|||+|.+|+++|..+++.|.+|+|+||....+|... ...+ +... ++
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 4568999999999999999999999999999999886543111 1000 0000 00
Q ss_pred -----cCC---ccccCCCCCCCCC--------------C-----C-CCCCHHHHHHHHHHHHHHcCCccccceeEEEEEE
Q 013435 85 -----LPK---QFCQLPLMPFPSN--------------F-----P-TYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEY 136 (443)
Q Consensus 85 -----~~~---~~~~~~~~~~~~~--------------~-----~-~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~ 136 (443)
.+. .+.. -..++... . . ...+...+...|.+.+++.+++++.++.|+++..
T Consensus 94 ~~~~~s~~~i~~L~~-~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~ 172 (541)
T PRK07804 94 SLVAEGPRAVRELVA-LGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHHHH-cCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEE
Confidence 000 0000 00111100 0 0 1125677888888888888999999999999976
Q ss_pred eCCCCeEEEEEee---cCCCcEEEEEeCEEEEccCCCCC
Q 013435 137 DHLSRLWRVKTQQ---GLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 137 ~~~~~~~~v~~~~---~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+++....-+...+ +..++...+.|+.||+|||.++.
T Consensus 173 ~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 173 DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred cCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 5421222233321 11122357999999999998654
No 191
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.62 E-value=6.5e-08 Score=68.59 Aligned_cols=47 Identities=30% Similarity=0.405 Sum_probs=39.7
Q ss_pred EECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeec
Q 013435 39 IVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHL 85 (443)
Q Consensus 39 IIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~ 85 (443)
|||||++|+++|..|++.|.+|+|+|+.+.+||.+....+++...+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~ 47 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDL 47 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEET
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEee
Confidence 89999999999999999999999999999999988765555544443
No 192
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.61 E-value=3.5e-07 Score=87.05 Aligned_cols=127 Identities=15% Similarity=0.215 Sum_probs=73.7
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEE-ecCCCCCcccccCCCCcee-eecCCc---------------cccCCCCCC-
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLIL-ERANCIASLWQLKTYDRLR-LHLPKQ---------------FCQLPLMPF- 97 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~ii-e~~~~~gg~w~~~~~~~~~-~~~~~~---------------~~~~~~~~~- 97 (443)
||+|||||.||+.||+.+++.|.+|+++ .+.+.++...+.....+.. -....+ ..++.....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 7999999999999999999999999999 3444444332222111100 000000 000000000
Q ss_pred --CCCCCC--CCCHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 98 --PSNFPT--YPTKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 98 --~~~~~~--~~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
|..+.. ...+..+..++++.++. .++.+ .+.+|+++..+++ ...-|.+.++ ..+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~-~v~GV~~~~g-----~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTI-IQGEVTDLIVENG-KVKGVVTKDG-----EEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEE-EES-EEEEEECTT-EEEEEEETTS-----EEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEE-EEcccceEEecCC-eEEEEEeCCC-----CEEecCEEEEeccc
Confidence 111111 24678888899888776 45555 4678999988763 4445667665 79999999999995
No 193
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=6.7e-07 Score=91.60 Aligned_cols=139 Identities=15% Similarity=0.103 Sum_probs=83.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccCCC---------Cceee-------------e-----
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--WQLKTY---------DRLRL-------------H----- 84 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--w~~~~~---------~~~~~-------------~----- 84 (443)
.+||+|||+|.||+++|..+++.|.+|+|+||....+|. |.+... +.... +
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~ 86 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 479999999999999999999999999999998654431 111000 00000 0
Q ss_pred -----cCCc-----cccCCCCCCCC------CCCC-----------------CCCHHHHHHHHHHHHHHcCCccccceeE
Q 013435 85 -----LPKQ-----FCQLPLMPFPS------NFPT-----------------YPTKQQFLTYLETYTNHFGLDPVFNTTV 131 (443)
Q Consensus 85 -----~~~~-----~~~~~~~~~~~------~~~~-----------------~~~~~~~~~~l~~~~~~~~~~v~~~~~V 131 (443)
.+.. -+..++....+ .+.+ -.+...+...+.+.+.+.+++++.++.+
T Consensus 87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~ 166 (588)
T PRK08958 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcEE
Confidence 0000 00111100000 0000 0145677888887777788999999999
Q ss_pred EEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 132 VNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 132 ~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+++-.+++....-+...+...++...+.|+.||+|||..+.
T Consensus 167 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 167 LDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred EEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 99876532222223332323345568999999999997654
No 194
>PRK07121 hypothetical protein; Validated
Probab=98.61 E-value=1.5e-06 Score=87.61 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEe-CEEEEccCCCC
Q 013435 107 KQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLC-QWLIVATGENA 171 (443)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a-~~vIiAtG~~~ 171 (443)
...+...+...+++.++++++++.|+++..+++....-|.... .++...+.+ +.||+|||.++
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR--YGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe--CCcEEEEEeCCEEEECCCCcC
Confidence 5567778888888889999999999999876432333344432 223467899 99999999754
No 195
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.61 E-value=5.1e-07 Score=90.13 Aligned_cols=130 Identities=19% Similarity=0.224 Sum_probs=78.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc-ccCCC-------Cceee---e---------cC-------
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW-QLKTY-------DRLRL---H---------LP------- 86 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~-------~~~~~---~---------~~------- 86 (443)
++||+|||+|.+|+++|..+++.|.+|+|+|+....+.++ .+... +.... + .+
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4799999999999999999999999999999976433211 11100 00000 0 00
Q ss_pred ----C--ccccCCCCCCCC-------CCC-----CCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeE-EEEE
Q 013435 87 ----K--QFCQLPLMPFPS-------NFP-----TYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLW-RVKT 147 (443)
Q Consensus 87 ----~--~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-~v~~ 147 (443)
. .+..--..++.. .++ ...+...+.+.+.+.+.+.++++... .++.+..++ +.+ -+..
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~ 157 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFL 157 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEE
Confidence 0 000000011110 000 01245678888888888889887655 677776544 343 2333
Q ss_pred eecCCCcEEEEEeCEEEEccCCCCC
Q 013435 148 QQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 148 ~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
++ ..+.++.||+|||.++.
T Consensus 158 -~g-----~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 158 -DG-----ELLKFDATVIATGGFSG 176 (466)
T ss_pred -CC-----EEEEeCeEEECCCcCcC
Confidence 22 57999999999997654
No 196
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.60 E-value=7.4e-07 Score=87.31 Aligned_cols=105 Identities=22% Similarity=0.218 Sum_probs=83.8
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
..+.+++|||||+.|+.+|..+.+.|.+|+|+|+.+.+-. ....++.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp---------------------------------~~D~ei~ 217 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP---------------------------------GEDPEIS 217 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC---------------------------------cCCHHHH
Confidence 4556799999999999999999999999999999885410 0237888
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
+.+.+..++.++.++.++.|+.++..+ +.+.+...++.. ..+++|.|++|+| .+|+..
T Consensus 218 ~~~~~~l~~~gv~i~~~~~v~~~~~~~--~~v~v~~~~g~~---~~~~ad~vLvAiG--R~Pn~~ 275 (454)
T COG1249 218 KELTKQLEKGGVKILLNTKVTAVEKKD--DGVLVTLEDGEG---GTIEADAVLVAIG--RKPNTD 275 (454)
T ss_pred HHHHHHHHhCCeEEEccceEEEEEecC--CeEEEEEecCCC---CEEEeeEEEEccC--CccCCC
Confidence 888888888788899999999998877 336677766421 2799999999999 455544
No 197
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.59 E-value=5.4e-08 Score=71.84 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=31.5
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
+|+|||||.+|+|+|..|++.|.+||++.|++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 689999999999999999999999999999994
No 198
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.59 E-value=9.5e-07 Score=90.96 Aligned_cols=140 Identities=16% Similarity=0.092 Sum_probs=84.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc--ccCCCCce----eeecCCc------------------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW--QLKTYDRL----RLHLPKQ------------------ 88 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w--~~~~~~~~----~~~~~~~------------------ 88 (443)
..+||+|||+|.||+++|..+++.|.+|+|+||....+|.. .+...... .-+.+..
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 46799999999999999999999999999999987655421 11100000 0000000
Q ss_pred ---------------cccCCCCCCCC------CCCC------------------CCCHHHHHHHHHHHHHHcCCccccce
Q 013435 89 ---------------FCQLPLMPFPS------NFPT------------------YPTKQQFLTYLETYTNHFGLDPVFNT 129 (443)
Q Consensus 89 ---------------~~~~~~~~~~~------~~~~------------------~~~~~~~~~~l~~~~~~~~~~v~~~~ 129 (443)
-+..++....+ .+.+ -.+...+...+.+.+.+.++++..++
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~ 187 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEY 187 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEece
Confidence 00000000000 0000 01456788888888888899999999
Q ss_pred eEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 130 TVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 130 ~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.++++-.+++....-|...+...++...+.|+.||+|||..+.
T Consensus 188 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 188 FALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred EEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 9999776332122223332322345578999999999997654
No 199
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.58 E-value=1.4e-06 Score=89.49 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=80.7
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--------cccCCC----Ccee-------------ee------
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--------WQLKTY----DRLR-------------LH------ 84 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--------w~~~~~----~~~~-------------~~------ 84 (443)
||+|||+|.+|+++|..+++.|.+|+|+||....+|. +..... +... .+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 7999999999999999999999999999998754431 111000 0000 00
Q ss_pred ----cCC-----ccccCCCCCCCCC----------------CCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCC
Q 013435 85 ----LPK-----QFCQLPLMPFPSN----------------FPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHL 139 (443)
Q Consensus 85 ----~~~-----~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~ 139 (443)
.+. .-...++...++. +..-.....+...+.+.+.+.+++++.++.|+++..++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~- 159 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD- 159 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-
Confidence 000 0000000000000 00111345677777777777799999999999998764
Q ss_pred CCeE-EEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 140 SRLW-RVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 140 ~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+.+ -|...+...++...+.|+.||+|||.++.
T Consensus 160 -g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 160 -GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred -CEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 432 23332222234467999999999997654
No 200
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.58 E-value=1.9e-06 Score=88.42 Aligned_cols=140 Identities=16% Similarity=0.093 Sum_probs=83.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc--ccCCCC----ceeeecCCc------------------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW--QLKTYD----RLRLHLPKQ------------------ 88 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w--~~~~~~----~~~~~~~~~------------------ 88 (443)
..+||+|||+|.||+++|..+++.|.+|+|+|+....+|.. .+.... ...-+.+..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v 90 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAI 90 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHH
Confidence 45799999999999999999999999999999975433321 110000 000000000
Q ss_pred ---------------cccCCCC----------CCCCC-------------CCCCCCHHHHHHHHHHHHHHcCCcccccee
Q 013435 89 ---------------FCQLPLM----------PFPSN-------------FPTYPTKQQFLTYLETYTNHFGLDPVFNTT 130 (443)
Q Consensus 89 ---------------~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~ 130 (443)
....++. .+... ...-.+...+...+.+.+.+.+++++.++.
T Consensus 91 ~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~~~~ 170 (591)
T PRK07057 91 EFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVEWM 170 (591)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEeCcE
Confidence 0000000 00000 000123566778888877888999999999
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 131 VVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 131 V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
++++..+++....-|...+..+++...+.++.||+|||..+.
T Consensus 171 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 171 ALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred EEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence 998876532223334433322334468899999999997654
No 201
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.58 E-value=8.3e-07 Score=89.03 Aligned_cols=131 Identities=15% Similarity=0.101 Sum_probs=77.8
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC-CcccccCCCCce-----e--eecCCc---------cccCCCCC-
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCI-ASLWQLKTYDRL-----R--LHLPKQ---------FCQLPLMP- 96 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~-gg~w~~~~~~~~-----~--~~~~~~---------~~~~~~~~- 96 (443)
|||+|||||++|+.+|..+++.|.+++++++.... |...+.....+. . ++.... ..++..+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 69999999999999999999999999999986432 221111111100 0 000000 00011110
Q ss_pred --CCCCCC--CCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 97 --FPSNFP--TYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 97 --~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
-+..+. ....+..+...+++.+++. ++.++ ...|+.+...++...+.|.+.++ ..+.|+.||+|||.+.
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G-----~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDG-----LKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCC-----CEEECCEEEEccCccc
Confidence 011100 1235667777887777776 55554 44677776542224455777664 5899999999999753
No 202
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.57 E-value=1e-06 Score=88.30 Aligned_cols=105 Identities=24% Similarity=0.312 Sum_probs=76.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PT--EDAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------Cc--CCHHHHHH
Confidence 4689999999999999999999999999999876431 00 12556677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
+.+.+++.|++++.+++|.+++...+.....+...++ +..++.+|.||+|+| ..|+.+
T Consensus 227 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g---~~~~i~~D~vi~a~G--~~p~~~ 284 (472)
T PRK05976 227 VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNG---EEKTLEADKVLVSVG--RRPNTE 284 (472)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCC---ceEEEEeCEEEEeeC--CccCCC
Confidence 7777788899999999999998621113222333332 335799999999999 455543
No 203
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=1.6e-06 Score=88.63 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=83.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccCCC-----------Ccee-------------eec-
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--WQLKTY-----------DRLR-------------LHL- 85 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--w~~~~~-----------~~~~-------------~~~- 85 (443)
..+||+|||+|.+|+++|..+++.|.+|+|+||....++. +..... +... .+.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 3579999999999999999999999999999998654432 111000 0000 000
Q ss_pred ---------CC---c--cccCCCCCCCCC-----------C-----CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEE
Q 013435 86 ---------PK---Q--FCQLPLMPFPSN-----------F-----PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAE 135 (443)
Q Consensus 86 ---------~~---~--~~~~~~~~~~~~-----------~-----~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~ 135 (443)
+. . .+..++...++. . ....+...+...+.+.+.+.++++..++.++++.
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li 163 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLV 163 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEE
Confidence 00 0 001111000000 0 0012456677777777777789999999999988
Q ss_pred EeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 136 YDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 136 ~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
.++ +.+ -|...+..+++...+.|+.||+|||..+
T Consensus 164 ~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 164 TDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 764 333 2444333333456899999999999754
No 204
>PRK08275 putative oxidoreductase; Provisional
Probab=98.57 E-value=2e-06 Score=87.82 Aligned_cols=140 Identities=16% Similarity=0.149 Sum_probs=82.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCC-Cccc--ccCCCCc-ee--eecCCccc--------------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCI-ASLW--QLKTYDR-LR--LHLPKQFC-------------- 90 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~-gg~w--~~~~~~~-~~--~~~~~~~~-------------- 90 (443)
..+||+|||+|.||++||..+++. |.+|+|+||.... +|.+ ....... .. .+.+..+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 457999999999999999999987 6899999998753 2221 1100000 00 00000000
Q ss_pred --------------cC--CCCCCCC---C---------CC----CCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeC
Q 013435 91 --------------QL--PLMPFPS---N---------FP----TYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDH 138 (443)
Q Consensus 91 --------------~~--~~~~~~~---~---------~~----~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~ 138 (443)
.+ -+.++.. . .. ...+...+...+.+.+.+.++++..++.|+++..++
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~ 167 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDA 167 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC
Confidence 00 0001100 0 00 012456788888888888899999999999997752
Q ss_pred CCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 139 LSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+....-+...+...++...+.++.||+|||..+.
T Consensus 168 ~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 168 DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred CCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 2122223322222234467999999999997544
No 205
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.57 E-value=3.4e-06 Score=79.94 Aligned_cols=60 Identities=20% Similarity=0.354 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 107 KQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
...+.+-++++.+.+|+.++++++|.+++..+. ....|.++++ .++.+|+||+|.|..++
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-~~~~v~~~~g-----~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-EVLGVKLTKG-----EEIEADYVVLAPGRSGR 231 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-ceEEEEccCC-----cEEecCEEEEccCcchH
Confidence 356677788889999999999999999998773 2455777775 79999999999998554
No 206
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.56 E-value=6.5e-07 Score=92.22 Aligned_cols=140 Identities=19% Similarity=0.099 Sum_probs=84.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccCCCCce----eeecC--------------------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--WQLKTYDRL----RLHLP-------------------- 86 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--w~~~~~~~~----~~~~~-------------------- 86 (443)
..+||+|||+|.||+++|..+++.|.+|+|+||....+|. +.+...... .-+.+
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv 128 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 128 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 4579999999999999999999999999999998755431 111100000 00000
Q ss_pred --------CccccC--CCCCCCCC---------CC------------------CCCCHHHHHHHHHHHHHHcCCccccce
Q 013435 87 --------KQFCQL--PLMPFPSN---------FP------------------TYPTKQQFLTYLETYTNHFGLDPVFNT 129 (443)
Q Consensus 87 --------~~~~~~--~~~~~~~~---------~~------------------~~~~~~~~~~~l~~~~~~~~~~v~~~~ 129 (443)
.....+ -..+|... +. .-.+...+...+.+.+.+.+++++.++
T Consensus 129 ~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~ 208 (635)
T PLN00128 129 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEY 208 (635)
T ss_pred HHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence 000000 01111100 00 011456677888777777899999999
Q ss_pred eEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 130 TVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 130 ~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.++++-.+++....-+...+...++...+.|+.||+|||..+.
T Consensus 209 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 209 FALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred EEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence 9998766532122223333322345578999999999998654
No 207
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.56 E-value=9.3e-07 Score=87.82 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=76.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . ...++...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-------------------------------R--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-------------------------------C--CCHHHHHH
Confidence 45799999999999999999999999999999764310 0 12456667
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.+++++.+++|++++..+ +.+.+..+ + .++.+|.||+|+| ..|+.
T Consensus 204 ~~~~l~~~GI~i~~~~~V~~i~~~~--~~v~v~~~-g-----~~i~~D~viva~G--~~p~~ 255 (438)
T PRK07251 204 AKQYMEEDGITFLLNAHTTEVKNDG--DQVLVVTE-D-----ETYRFDALLYATG--RKPNT 255 (438)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEecC--CEEEEEEC-C-----eEEEcCEEEEeeC--CCCCc
Confidence 7777888899999999999998754 45444432 2 5799999999999 45553
No 208
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=1.5e-06 Score=89.79 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=34.1
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI 69 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~ 69 (443)
...+||+|||+|.+|+++|..+++.|.+|+|+|+...+
T Consensus 33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 35689999999999999999999999999999986544
No 209
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=1.9e-06 Score=89.01 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=34.4
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIA 70 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g 70 (443)
..+||+|||+|.||+++|..+++.|.+|+|+|+....+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 35799999999999999999999999999999987543
No 210
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.55 E-value=7.8e-07 Score=86.59 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=77.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. .. ....+..
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~~-~~~~~~~ 187 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------SL-MPPEVSS 187 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------hh-CCHHHHH
Confidence 346899999999999999999999999999998764310 00 1245566
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+++.++++.+++.|.+++..+ ..+.+.+.++ .++.+|.||+|+|.
T Consensus 188 ~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g-----~~i~~D~vI~a~G~ 237 (377)
T PRK04965 188 RLQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSG-----RSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHHhCCCEEEECCeEEEEEccC--CEEEEEEcCC-----cEEECCEEEECcCC
Confidence 77777788899999999999998765 5666776665 68999999999995
No 211
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.55 E-value=9.9e-07 Score=90.12 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=79.4
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC-C-C-ccccc--CCCC-------ce-----------------e
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANC-I-A-SLWQL--KTYD-------RL-----------------R 82 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~-~-g-g~w~~--~~~~-------~~-----------------~ 82 (443)
.+..+|+|||||++|+++|..|.++|++++|+|+.+. . + |.+.. ...+ .+ .
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 6779999999999999999999999999999999752 1 1 11110 0000 00 0
Q ss_pred e----ecCCc--cccCCCCCCCCC--CC--CCCCHHHHHHHHHHHHHHcCCc-cccceeEEEEEEeCCCCeEEEEEeecC
Q 013435 83 L----HLPKQ--FCQLPLMPFPSN--FP--TYPTKQQFLTYLETYTNHFGLD-PVFNTTVVNAEYDHLSRLWRVKTQQGL 151 (443)
Q Consensus 83 ~----~~~~~--~~~~~~~~~~~~--~~--~~~~~~~~~~~l~~~~~~~~~~-v~~~~~V~~i~~~~~~~~~~v~~~~~~ 151 (443)
. +.... ...+........ .+ ....+.++.+.|.+ ..+.. ++++++|++++..+ +.++|++.++
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~---alg~~~i~~g~~V~~I~~~~--d~VtV~~~dG- 232 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILAR---AVGEDVIRNESNVVDFEDSG--DKVTVVLENG- 232 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHh---hCCCCEEEcCCEEEEEEEeC--CEEEEEECCC-
Confidence 0 00000 000000000000 00 01245666666543 23333 56788999998776 6777877765
Q ss_pred CCcEEEEEeCEEEEccCCCCCC
Q 013435 152 KQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 152 ~~~~~~i~a~~vIiAtG~~~~p 173 (443)
.++.+|.||.|.|.+|.-
T Consensus 233 ----~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 233 ----QRYEGDLLVGADGIWSKV 250 (668)
T ss_pred ----CEEEcCEEEECCCCCcHH
Confidence 678999999999997743
No 212
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=2e-06 Score=88.34 Aligned_cols=140 Identities=14% Similarity=0.077 Sum_probs=84.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccCCCCc----eeeecCC-------------------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--WQLKTYDR----LRLHLPK------------------- 87 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--w~~~~~~~----~~~~~~~------------------- 87 (443)
..+||+|||+|.+|+++|..+++.|.+|+|+||....++. +.+..... ...+.+.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv 90 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAI 90 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHH
Confidence 4579999999999999999999999999999997644332 11100000 0000000
Q ss_pred --------------ccccCCCCCCCC------CCC------------------CCCCHHHHHHHHHHHHHHcCCccccce
Q 013435 88 --------------QFCQLPLMPFPS------NFP------------------TYPTKQQFLTYLETYTNHFGLDPVFNT 129 (443)
Q Consensus 88 --------------~~~~~~~~~~~~------~~~------------------~~~~~~~~~~~l~~~~~~~~~~v~~~~ 129 (443)
.-+..++....+ .+. .-.+...+...+.+.+.+.+++++.++
T Consensus 91 ~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~~ 170 (598)
T PRK09078 91 EYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIEY 170 (598)
T ss_pred HHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEeE
Confidence 000011100000 000 011456778888888888899999999
Q ss_pred eEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 130 TVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 130 ~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.++++-.+++....-|...+...++...+.|+.||+|||..+.
T Consensus 171 ~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 171 FALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred EEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 9999876542122223332222334578999999999997654
No 213
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.55 E-value=1.8e-06 Score=88.89 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=79.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCc-ccccCC--CCc-e-eeecCCcc----------------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIAS-LWQLKT--YDR-L-RLHLPKQF---------------- 89 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg-~w~~~~--~~~-~-~~~~~~~~---------------- 89 (443)
..+||+|||+|.||+++|..+++. |.+|+|+||....++ .+.... ... + .-+.+..+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 347999999999999999999998 999999999764322 211110 000 0 00000000
Q ss_pred --------------ccCCCCCCCC---C-------CCCCCCHHHHHHHHHHHHHHcC-CccccceeEEEEEEeCCCCeEE
Q 013435 90 --------------CQLPLMPFPS---N-------FPTYPTKQQFLTYLETYTNHFG-LDPVFNTTVVNAEYDHLSRLWR 144 (443)
Q Consensus 90 --------------~~~~~~~~~~---~-------~~~~~~~~~~~~~l~~~~~~~~-~~v~~~~~V~~i~~~~~~~~~~ 144 (443)
..--+.++.. . .........+...+.+.+.+.+ ++++.++.|+++..+++ ..+-
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g-~v~G 168 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDN-RIAG 168 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCC-EEEE
Confidence 0000011100 0 0001234566666766666655 89999999999876542 2222
Q ss_pred EEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 145 VKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 145 v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
|...+...++...+.|+.||+|||.++.
T Consensus 169 v~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 169 AVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEccCCcEEEEECCEEEECCCchhh
Confidence 3221212233458999999999997654
No 214
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=1.2e-06 Score=89.67 Aligned_cols=137 Identities=15% Similarity=0.098 Sum_probs=81.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCcc--cccCC----CCcee-eecCCc----------------
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASL--WQLKT----YDRLR-LHLPKQ---------------- 88 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~--w~~~~----~~~~~-~~~~~~---------------- 88 (443)
.+||+|||+|.+|+++|..+++.| .+|+|+||....++. +.... ..... .+.+..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 469999999999999999999874 899999998754431 11100 00000 000000
Q ss_pred ------------cccC--CCCCCCC---C----------------CCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEE
Q 013435 89 ------------FCQL--PLMPFPS---N----------------FPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAE 135 (443)
Q Consensus 89 ------------~~~~--~~~~~~~---~----------------~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~ 135 (443)
...+ -..++.. . +..-.+...+...+.+.+.+.+++++.++.|+++.
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~ 162 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLI 162 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEE
Confidence 0000 0011100 0 01112456788888887888899999999999987
Q ss_pred EeCCCCeEE-EEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 136 YDHLSRLWR-VKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 136 ~~~~~~~~~-v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.++ +.+. +...+...++...+.|+.||+|||.++.
T Consensus 163 ~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 163 LED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred EEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 654 3321 2211111223357999999999998654
No 215
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.52 E-value=8.9e-07 Score=88.53 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcC-CccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 108 QQFLTYLETYTNHFG-LDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 108 ~~~~~~l~~~~~~~~-~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
..+...+.+.+.+.+ ++++++++|++++..++ +.|.+.+.+...++..+++|++||+|+|.++.+
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 455666666677766 78999999999988653 457776653222222469999999999997643
No 216
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.52 E-value=2e-06 Score=86.55 Aligned_cols=133 Identities=14% Similarity=0.174 Sum_probs=80.8
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccCCC-------Ccee-------------eec-------
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--WQLKTY-------DRLR-------------LHL------- 85 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--w~~~~~-------~~~~-------------~~~------- 85 (443)
+||+|||+|.+|+++|..+++.|. |+|+||.+..+|. |..... +... ++.
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 81 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVV 81 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 699999999999999999999997 9999998654432 111100 0000 000
Q ss_pred ---CCc---c--ccCCCCCCCC-----------CC-----CCCCCHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCC
Q 013435 86 ---PKQ---F--CQLPLMPFPS-----------NF-----PTYPTKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLS 140 (443)
Q Consensus 86 ---~~~---~--~~~~~~~~~~-----------~~-----~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~ 140 (443)
+.. + ...++....+ .. ....+...+...+.+.+.+ .+++++.++.|+++..++
T Consensus 82 ~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~-- 159 (488)
T TIGR00551 82 SDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET-- 159 (488)
T ss_pred HhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--
Confidence 000 0 0011100000 00 0112456788888887776 589999999999997654
Q ss_pred CeEE-EEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 141 RLWR-VKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 141 ~~~~-v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+.+. +...+. ++...+.++.||+|||.++.
T Consensus 160 g~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 160 GRVVGVWVWNR--ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CEEEEEEEEEC--CcEEEEEcCEEEECCCcccC
Confidence 3332 444332 23357999999999998664
No 217
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=2.3e-06 Score=87.24 Aligned_cols=138 Identities=18% Similarity=0.165 Sum_probs=81.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC-CCcc--cccCCC-------Ccee-------------ee-----
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANC-IASL--WQLKTY-------DRLR-------------LH----- 84 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~-~gg~--w~~~~~-------~~~~-------------~~----- 84 (443)
..+||+|||+|.||++||..+ +.|.+|+|+|+... .||. +....+ +... .+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~ 84 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 457999999999999999999 89999999999764 3432 111000 0000 00
Q ss_pred -----cCCccccC--CCCCCCC-----------C---C-----CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeC
Q 013435 85 -----LPKQFCQL--PLMPFPS-----------N---F-----PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDH 138 (443)
Q Consensus 85 -----~~~~~~~~--~~~~~~~-----------~---~-----~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~ 138 (443)
.+.....+ -..++.. . + ..-.+...+...+.+.+.+.++++++++.++++..++
T Consensus 85 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~ 164 (543)
T PRK06263 85 ILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDE 164 (543)
T ss_pred HHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC
Confidence 00000000 0011110 0 0 0011356777888887877899999999999987765
Q ss_pred CCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 139 LSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
+....-+...+...++...+.|+.||+|||..+
T Consensus 165 ~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 165 NREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 211222333221233446899999999999754
No 218
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.51 E-value=1.6e-06 Score=86.84 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=79.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ...++...
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP-------------------------------G--EDAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC-------------------------------C--CCHHHHHH
Confidence 46899999999999999999999999999999764310 0 12456667
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
+.+.+++.+++++.+++|.+++..+ +.+.+...++ +..++.+|.||+|+| ..|+..
T Consensus 217 ~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~g---~~~~i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 217 VAKALKKKGVKILTNTKVTAVEKND--DQVVYENKGG---ETETLTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEeCC---cEEEEEeCEEEEecC--CcccCC
Confidence 7777788899999999999998765 5555555432 235799999999999 455543
No 219
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.50 E-value=1.9e-06 Score=86.20 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=79.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ...++...
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP-------------------------------G--EDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC-------------------------------c--CCHHHHHH
Confidence 46899999999999999999999999999999764310 0 12566677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.+++++.+++|.+++..+ +.+.+...++ ++..++.+|.||+|+| .+|+.
T Consensus 219 l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~g--g~~~~i~~D~vi~a~G--~~p~~ 274 (462)
T PRK06416 219 AERALKKRGIKIKTGAKAKKVEQTD--DGVTVTLEDG--GKEETLEADYVLVAVG--RRPNT 274 (462)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEEeC--CeeEEEEeCEEEEeeC--CccCC
Confidence 7777888899999999999998765 4555655442 2336799999999999 45543
No 220
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.50 E-value=1.6e-06 Score=82.83 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 108 QQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 108 ~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
..+.+.+.+.+.+. +..++++++|++|++..+ +.|.|++.+...++...++|++|++..|.++-+
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 34444444444444 888999999999999875 679999887666677999999999999986654
No 221
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.50 E-value=1e-06 Score=86.29 Aligned_cols=96 Identities=22% Similarity=0.251 Sum_probs=75.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.+. .....+..+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence 467999999999999999999999999999987643210 012456677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.++++++++.|++++. + +.+.+.+.++ ..+.+|.||+|+|.
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~v~l~~g-----~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD-G--EKVELTLQSG-----ETLQADVVIYGIGI 239 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc-C--CEEEEEECCC-----CEEECCEEEECCCC
Confidence 77777888999999999999876 3 4455666654 57999999999994
No 222
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=4.4e-06 Score=85.70 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=33.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIA 70 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g 70 (443)
+.||||||+|.||+++|..+++.|.+|+|+||....+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4599999999999999999999999999999987544
No 223
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=3.1e-06 Score=86.89 Aligned_cols=138 Identities=17% Similarity=0.111 Sum_probs=80.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcC---CCEEEEecCCCCCccc--ccCCCCce-e---eecCCc---------------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKG---VPSLILERANCIASLW--QLKTYDRL-R---LHLPKQ--------------- 88 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g---~~v~iie~~~~~gg~w--~~~~~~~~-~---~~~~~~--------------- 88 (443)
..+||+|||+|.||+++|..+++.| .+|+|+||....++.. ........ . -+++..
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~ 83 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQ 83 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCH
Confidence 3579999999999999999999998 8999999987655421 11100000 0 000000
Q ss_pred -------------cccC--CCCCCC---CC-----------C-----CCCCCHHHHHHHHHHHHHH-cCCccccceeEEE
Q 013435 89 -------------FCQL--PLMPFP---SN-----------F-----PTYPTKQQFLTYLETYTNH-FGLDPVFNTTVVN 133 (443)
Q Consensus 89 -------------~~~~--~~~~~~---~~-----------~-----~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~ 133 (443)
...+ -+.++. +. . ..-.+...+...+.+.+.+ .+++++.++.+++
T Consensus 84 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~ 163 (577)
T PRK06069 84 DAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTS 163 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEEE
Confidence 0000 001110 00 0 0011345577777766655 5888999999999
Q ss_pred EEEeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 134 AEYDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 134 i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+..++ +.+ -+...+...++...+.|+.||+|||..+.
T Consensus 164 Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 164 LIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred EEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 87654 332 12222222223357999999999997543
No 224
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=4.5e-06 Score=85.71 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCC---CCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHL---SRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~---~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+...+...+.+.+.+.++++..++.|+++..+++ ....-+...+...++...+.|+.||+|||..+.
T Consensus 138 tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 138 TGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 4567888888888888999999999999876531 122223332222334467999999999998653
No 225
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.46 E-value=2.8e-06 Score=84.86 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=76.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-------------------------------~--~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-------------------------------G--EDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-------------------------------c--ccHHHHHH
Confidence 35899999999999999999999999999998764310 0 12556777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.+++++++++|++++..+ ..+.+.. + ++..++.+|.||+|+| ..|+.
T Consensus 217 l~~~L~~~GI~i~~~~~V~~i~~~~--~~v~~~~-~---g~~~~i~~D~vivA~G--~~p~~ 270 (458)
T PRK06912 217 LREKLENDGVKIFTGAALKGLNSYK--KQALFEY-E---GSIQEVNAEFVLVSVG--RKPRV 270 (458)
T ss_pred HHHHHHHCCCEEEECCEEEEEEEcC--CEEEEEE-C---CceEEEEeCEEEEecC--CccCC
Confidence 7777888899999999999998654 4443432 2 1225799999999999 45554
No 226
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.46 E-value=5.4e-06 Score=82.66 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=38.3
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHc----CCCEEEEecCCCCCccc
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEK----GVPSLILERANCIASLW 73 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~----g~~v~iie~~~~~gg~w 73 (443)
......+++|||||.+||++|..|.+. |.+|+|+|+.+.+||..
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 445567899999999999999999996 67999999999998853
No 227
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.45 E-value=2.7e-06 Score=84.06 Aligned_cols=59 Identities=24% Similarity=0.207 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
....+...+.+.+.+.|++++.+++|++++..+ +.+ .|++.. .+++||+||+|+|.++.
T Consensus 199 ~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~------~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 199 DCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGG------GVITADAYVVALGSYST 258 (416)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCC------cEEeCCEEEECCCcchH
Confidence 445667777777888899999999999998766 443 355543 57999999999998764
No 228
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.45 E-value=1.1e-06 Score=85.80 Aligned_cols=60 Identities=22% Similarity=0.173 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHHcCCc-cccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLD-PVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~-v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.....+...+...+.+.|.. +..++.+..++.. . ..+.|.+..+ +++|+.||+|+|.++.
T Consensus 153 ~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g------~i~a~~vv~a~G~~~~ 213 (387)
T COG0665 153 LDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGG------TIEADKVVLAAGAWAG 213 (387)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCc------cEEeCEEEEcCchHHH
Confidence 34566777777778888844 5568888888876 2 5677888874 5999999999998654
No 229
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.45 E-value=2.3e-06 Score=85.68 Aligned_cols=96 Identities=20% Similarity=0.176 Sum_probs=76.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ....++...
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS---------------------------------FLDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC---------------------------------cCCHHHHHH
Confidence 46899999999999999999999999999998764310 012556677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.+++++.+++|++++..+ +.+.+++.++ .++.+|.||+|+|.
T Consensus 222 l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~i~~D~vi~a~G~ 270 (461)
T PRK05249 222 LSYHLRDSGVTIRHNEEVEKVEGGD--DGVIVHLKSG-----KKIKADCLLYANGR 270 (461)
T ss_pred HHHHHHHcCCEEEECCEEEEEEEeC--CeEEEEECCC-----CEEEeCEEEEeecC
Confidence 7777788899999999999998765 4555665543 57999999999994
No 230
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.44 E-value=3.7e-06 Score=84.14 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=77.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..+.+.|.+|+++++.+.+. +. ...++...
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~--~d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PG--TDTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CC--CCHHHHHH
Confidence 4689999999999999999999999999999876431 00 12456667
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+..++.+++++.++.|++++..+ +.+.+.......++...+.+|.||+|+| ..|+.
T Consensus 221 l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G--~~pn~ 278 (466)
T PRK06115 221 LQKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAETLQADYVLVAIG--RRPYT 278 (466)
T ss_pred HHHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeEEEeCEEEEccC--Ccccc
Confidence 7777788899999999999998754 4444444321112336799999999999 44443
No 231
>PLN02815 L-aspartate oxidase
Probab=98.44 E-value=3.9e-06 Score=85.75 Aligned_cols=140 Identities=11% Similarity=0.069 Sum_probs=81.8
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccCCC-------Ccee-------------ee-----
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--WQLKTY-------DRLR-------------LH----- 84 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--w~~~~~-------~~~~-------------~~----- 84 (443)
...+||+|||+|.+|+++|..+++.| +|+|+|+....+|. |.+... +... ++
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 34579999999999999999999999 99999998866542 111100 0000 00
Q ss_pred -----cCCc---c--ccCCCCC---------------CCCC-CCCCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEe
Q 013435 85 -----LPKQ---F--CQLPLMP---------------FPSN-FPTYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYD 137 (443)
Q Consensus 85 -----~~~~---~--~~~~~~~---------------~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~ 137 (443)
.+.. + ...++.. .+.. ...-.+...+...+.+.+.+. +++++.++.++++-.+
T Consensus 106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~ 185 (594)
T PLN02815 106 VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeee
Confidence 0000 0 0000000 0000 001124566777777766554 7888899999888765
Q ss_pred CCCC---eEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 138 HLSR---LWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 138 ~~~~---~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
++.+ ..-+...+...+....+.|+.||+|||..+.
T Consensus 186 ~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 186 QDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred cCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 3212 2223333333345578899999999997543
No 232
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.44 E-value=3.7e-06 Score=84.39 Aligned_cols=105 Identities=18% Similarity=0.160 Sum_probs=79.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++...
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 229 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------------------A--ADEQVAKE 229 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------------------c--CCHHHHHH
Confidence 46899999999999999999999999999998764310 0 12556667
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
+.+.+++.+++++.+++|++++..+ +.+.+...++ +++...+.+|.|++|+| ..|+.+
T Consensus 230 ~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~~-~g~~~~i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 230 AAKAFTKQGLDIHLGVKIGEIKTGG--KGVSVAYTDA-DGEAQTLEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred HHHHHHHcCcEEEeCcEEEEEEEcC--CEEEEEEEeC-CCceeEEEcCEEEEccC--CccCCC
Confidence 7777777899999999999998765 4555555442 23336799999999999 455544
No 233
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.43 E-value=1.8e-06 Score=82.58 Aligned_cols=100 Identities=25% Similarity=0.355 Sum_probs=79.4
Q ss_pred CCeEEECCCHHHHHHHHHHHHcC-------------CCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKG-------------VPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNF 101 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g-------------~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (443)
-.|+|+|||+.|+.+|-+|...- .+|+++|+.+.+-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 36999999999999999998741 3899999987541
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCC
Q 013435 102 PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPY 177 (443)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~ 177 (443)
+ ....++.++.++..++.|+++++++.|++++.+. |++.++ + ..|.|+.+|.|+|....|..-.
T Consensus 205 p--~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~g---~-~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 205 P--MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKDG---E-EEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred c--CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEccC---C-eeEecCEEEEcCCCcCChhhhh
Confidence 1 1237788899999999999999999999998765 777764 1 2699999999999765554444
No 234
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.43 E-value=7.8e-07 Score=83.19 Aligned_cols=150 Identities=15% Similarity=0.151 Sum_probs=86.4
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccc-cccCC-----Cccchhhhhhhhch---hHHHHHHHHHHHH
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQ-EMIGR-----STFGLSMCLLKWFP---VRLVDQFLLLMSW 273 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~-~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 273 (443)
..|+|||+|+.|+-+|..+++.|.+|+++.+.+. +-.. ...|. ...+....+....| ..+...+.++-.+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k-~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK-LGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc-ccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 4799999999999999999999999999998873 1111 11110 00111111112223 3333333333222
Q ss_pred HHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC----cEEEcCCcEEcccEEEEc
Q 013435 274 LMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH----AAEFIDGSIENYDAIILA 347 (443)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~----~v~~~~g~~~~~D~vi~a 347 (443)
-++.=.+++++...+...-.+--.+.+...+-+-++.++++.+|+++.+ |..+..+ .+.+.+|+++.||.+|+|
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilA 162 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILA 162 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEe
Confidence 2232233344432211111111111222344555678888999999987 7777655 266678889999999999
Q ss_pred cC--CCCC
Q 013435 348 TG--YKSN 353 (443)
Q Consensus 348 tG--~~~~ 353 (443)
|| .-|.
T Consensus 163 tGG~S~P~ 170 (408)
T COG2081 163 TGGKSWPK 170 (408)
T ss_pred cCCcCCCC
Confidence 99 4553
No 235
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.42 E-value=4.2e-06 Score=82.70 Aligned_cols=134 Identities=15% Similarity=0.102 Sum_probs=77.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccc--cCCC------Cce-------------eee--------
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQ--LKTY------DRL-------------RLH-------- 84 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~--~~~~------~~~-------------~~~-------- 84 (443)
.+||||||+|.+|+++|..+. .|.+|+|+||.+..++... .... ... ..+
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~~ 82 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKILA 82 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 479999999999999999984 7999999999876654211 0000 000 000
Q ss_pred --cCC---cc--ccCCCCC------C--CCCC-------CCCCCHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCCC
Q 013435 85 --LPK---QF--CQLPLMP------F--PSNF-------PTYPTKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLSR 141 (443)
Q Consensus 85 --~~~---~~--~~~~~~~------~--~~~~-------~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~ 141 (443)
++. .+ +..++.. + +... ..-.+...+...+.+.+.+ .++++++++.|+++..+++ .
T Consensus 83 ~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~-~ 161 (433)
T PRK06175 83 NESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDN-T 161 (433)
T ss_pred HHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCC-E
Confidence 000 00 0000000 0 0000 0011345667777666654 5899999999999876542 2
Q ss_pred eEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 142 LWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 142 ~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
.+-+.... .++...+.|+.||+|||..+
T Consensus 162 v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 162 CIGAICLK--DNKQINIYSKVTILATGGIG 189 (433)
T ss_pred EEEEEEEE--CCcEEEEEcCeEEEccCccc
Confidence 22222222 11335799999999999643
No 236
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.42 E-value=4.3e-06 Score=77.25 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=110.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
+.+++|||+|..|+.++.-..+.|.+|+++|-.+.+|+. -..++...
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---------------------------------mD~Eisk~ 257 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---------------------------------MDGEISKA 257 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---------------------------------cCHHHHHH
Confidence 457999999999999999999999999999998877642 12677788
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCC--------Cc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDG--------FR 185 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~--------~~ 185 (443)
++....+.++.+.++++|+.++.+.+ +.+.|+..+-..++..+++||.+++|+| .+|. ..|+.. .+
T Consensus 258 ~qr~L~kQgikF~l~tkv~~a~~~~d-g~v~i~ve~ak~~k~~tle~DvlLVsiG--RrP~---t~GLgle~iGi~~D~r 331 (506)
T KOG1335|consen 258 FQRVLQKQGIKFKLGTKVTSATRNGD-GPVEIEVENAKTGKKETLECDVLLVSIG--RRPF---TEGLGLEKIGIELDKR 331 (506)
T ss_pred HHHHHHhcCceeEeccEEEEeeccCC-CceEEEEEecCCCceeEEEeeEEEEEcc--Cccc---ccCCChhhcccccccc
Confidence 88888888999999999999999886 3777888877777889999999999999 3443 333321 12
Q ss_pred ccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcC
Q 013435 186 GPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYN 225 (443)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g 225 (443)
+++..-. .....-.+|-.||--.-|--+|...-+.|
T Consensus 332 ~rv~v~~----~f~t~vP~i~~IGDv~~gpMLAhkAeeeg 367 (506)
T KOG1335|consen 332 GRVIVNT----RFQTKVPHIYAIGDVTLGPMLAHKAEEEG 367 (506)
T ss_pred cceeccc----cccccCCceEEecccCCcchhhhhhhhhc
Confidence 2222211 11222346778887777766666665555
No 237
>PRK06116 glutathione reductase; Validated
Probab=98.42 E-value=3e-06 Score=84.50 Aligned_cols=102 Identities=18% Similarity=0.132 Sum_probs=79.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++...
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-------------------------------G--FDPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-------------------------------c--cCHHHHHH
Confidence 46899999999999999999999999999998763210 0 12456677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
+.+.+++.+++++.+++|.+++..++ +.+.+.+.++ .++.+|.||+|+| ..|+..
T Consensus 214 l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~~v~~~~g-----~~i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 214 LVEEMEKKGIRLHTNAVPKAVEKNAD-GSLTLTLEDG-----ETLTVDCLIWAIG--REPNTD 268 (450)
T ss_pred HHHHHHHCCcEEECCCEEEEEEEcCC-ceEEEEEcCC-----cEEEeCEEEEeeC--CCcCCC
Confidence 77778888999999999999987642 3355666554 5799999999999 455443
No 238
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.42 E-value=4.3e-06 Score=83.75 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=78.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-------------------------------R--EEPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-------------------------------c--cCHHHHHH
Confidence 36899999999999999999999999999998764310 0 12456677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
+.+..++.+++++.+++|..++.++ +.+.+++... +...++.+|.||+|+| .+|+..
T Consensus 213 l~~~l~~~gV~i~~~~~V~~i~~~~--~~~~v~~~~~--~~~~~i~~D~ViiA~G--~~p~~~ 269 (463)
T TIGR02053 213 VEEALAEEGIEVVTSAQVKAVSVRG--GGKIITVEKP--GGQGEVEADELLVATG--RRPNTD 269 (463)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEcC--CEEEEEEEeC--CCceEEEeCEEEEeEC--CCcCCC
Confidence 7777788899999999999998765 4444554321 1126799999999999 455543
No 239
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=4.7e-06 Score=83.45 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=78.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|++.|.+|+|+++.+.+. +. ...++...
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PN--EDAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Cc--cCHHHHHH
Confidence 4689999999999999999999999999999876331 00 12456677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+..++.+++++.+++|++++..+ ..+.+.... ..++..++.+|.||+|+| .+|+.
T Consensus 219 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~-~~g~~~~i~~D~vi~a~G--~~pn~ 275 (466)
T PRK07818 219 IAKQYKKLGVKILTGTKVESIDDNG--SKVTVTVSK-KDGKAQELEADKVLQAIG--FAPRV 275 (466)
T ss_pred HHHHHHHCCCEEEECCEEEEEEEeC--CeEEEEEEe-cCCCeEEEEeCEEEECcC--cccCC
Confidence 7777888899999999999998654 444455431 112335799999999999 45543
No 240
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.41 E-value=4.5e-06 Score=85.74 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=30.7
Q ss_pred eEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Q 013435 37 PVIVGAGPSGLATAACLTEKGVPSLILERANCI 69 (443)
Q Consensus 37 vvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~ 69 (443)
|+|||+|.||+++|..+++.|.+|+|+||...+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 799999999999999999999999999998733
No 241
>PRK12839 hypothetical protein; Provisional
Probab=98.41 E-value=8.1e-06 Score=83.38 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=38.4
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
+....+||+|||+|.+|+++|..+.+.|.+|+|+|+...+||.
T Consensus 4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 4 SMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 4456789999999999999999999999999999998877764
No 242
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.41 E-value=7.8e-06 Score=83.63 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=80.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCccc--ccCCC-------Ccee-------------ee-----
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLW--QLKTY-------DRLR-------------LH----- 84 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w--~~~~~-------~~~~-------------~~----- 84 (443)
.+||+|||+|.+|+++|..+++. |.+|+|+||....++.. .+... +... .+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 47999999999999999999987 58999999987655421 11100 0000 00
Q ss_pred -----cCCc-----cccCCCCCCCC------CC----------CCCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEe
Q 013435 85 -----LPKQ-----FCQLPLMPFPS------NF----------PTYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYD 137 (443)
Q Consensus 85 -----~~~~-----~~~~~~~~~~~------~~----------~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~ 137 (443)
.+.. -+..++....+ .. ..-.+...+...+.+.+.+. ++++..++.++++..+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 0000 00111100000 00 01124667777777766553 6888889999988765
Q ss_pred CCCCeEE-EEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 138 HLSRLWR-VKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 138 ~~~~~~~-v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+ +.+. +...+...++...+.|+.||+|||..+.
T Consensus 163 ~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 163 D--GRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred C--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 4 3321 2222222334468999999999997654
No 243
>PRK06370 mercuric reductase; Validated
Probab=98.40 E-value=5.3e-06 Score=83.06 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=77.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++...
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 217 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-------------------------------R--EDEDVAAA 217 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-------------------------------c--cCHHHHHH
Confidence 46899999999999999999999999999998764311 0 12456667
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.++++++++.|.+++..+ +...+...... +..++.+|.||+|+| .+|+.
T Consensus 218 l~~~l~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~~~--~~~~i~~D~Vi~A~G--~~pn~ 273 (463)
T PRK06370 218 VREILEREGIDVRLNAECIRVERDG--DGIAVGLDCNG--GAPEITGSHILVAVG--RVPNT 273 (463)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEEeCC--CceEEEeCEEEECcC--CCcCC
Confidence 7777788899999999999998765 34444443211 125799999999999 45553
No 244
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.39 E-value=6.3e-06 Score=83.20 Aligned_cols=134 Identities=17% Similarity=0.169 Sum_probs=78.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc--ccCCCCce--eeecCCc---------------------
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW--QLKTYDRL--RLHLPKQ--------------------- 88 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w--~~~~~~~~--~~~~~~~--------------------- 88 (443)
.+||+|||+|.||+++|..+++ |.+|+|+|+.+..+|.. .+...... .-+++..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 5799999999999999999976 89999999987655422 11100000 0000000
Q ss_pred -------cccC--CCCCCCC------------C--C------CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCC
Q 013435 89 -------FCQL--PLMPFPS------------N--F------PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHL 139 (443)
Q Consensus 89 -------~~~~--~~~~~~~------------~--~------~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~ 139 (443)
...+ -..+|.. . . .+..+...+.+.+.+.+. .+++++.++.|+++..++
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~- 159 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIEN- 159 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeecC-
Confidence 0000 0111110 0 0 011234567777766655 588889999999886554
Q ss_pred CCeE-EEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 140 SRLW-RVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 140 ~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+.+ -+...+. .++...+.|+.||+|||.++.
T Consensus 160 -g~v~Gv~~~~~-~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 160 -GRCIGVLTKDS-EGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred -CEEEEEEEEEC-CCcEEEEEcCeEEEecCCCcc
Confidence 332 2444332 334458999999999997554
No 245
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.39 E-value=6.6e-07 Score=88.70 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~ 170 (443)
..+..+.++|.+.+.+.|++++.++ |+++...++.....|++.++ .+++||++|-|+|..
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g-----~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDG-----RTIEADFFIDASGRR 210 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTS-----EEEEESEEEE-SGGG
T ss_pred EeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCC-----CEEEEeEEEECCCcc
Confidence 4789999999999999999987774 88888776322234666655 789999999999953
No 246
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.39 E-value=6.5e-06 Score=84.39 Aligned_cols=138 Identities=17% Similarity=0.158 Sum_probs=79.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCcccc--cCCC-------Cce-------------eeec---
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASLWQ--LKTY-------DRL-------------RLHL--- 85 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~--~~~~-------~~~-------------~~~~--- 85 (443)
..+||+|||+|.+|++||..+++.| .+|+|+||....+|... .... +.. .++.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 82 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVV 82 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 3579999999999999999999874 79999999875554211 1000 000 0000
Q ss_pred -------CC-----ccccCCCCCCCCC------C----------CCCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEE
Q 013435 86 -------PK-----QFCQLPLMPFPSN------F----------PTYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEY 136 (443)
Q Consensus 86 -------~~-----~~~~~~~~~~~~~------~----------~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~ 136 (443)
+. .-+..++....+. . ....+...+...+.+.+.+. +++++.++.++++..
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 162 (582)
T PRK09231 83 EYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILV 162 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEE
Confidence 00 0001111100000 0 00114456766666655554 688888999999887
Q ss_pred eCCCCeEE-EEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 137 DHLSRLWR-VKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 137 ~~~~~~~~-v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
++ +.+. +...+...++...+.|+.||+|||..+.
T Consensus 163 ~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 163 DD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred eC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 54 3322 2221222234468999999999997654
No 247
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.39 E-value=4.1e-06 Score=83.35 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=77.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..+.+.|.+|+++++.+.+. +. ...++...
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RG--FDDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------cc--cCHHHHHH
Confidence 4579999999999999999999999999999876421 00 12556667
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
+.+.+++.+++++.++.|.+++..+ ..+.+.+.++ .++.+|.||+|+| ..|+
T Consensus 213 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g-----~~i~~D~viva~G--~~pn 264 (446)
T TIGR01424 213 LARNMEGRGIRIHPQTSLTSITKTD--DGLKVTLSHG-----EEIVADVVLFATG--RSPN 264 (446)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcC--CeEEEEEcCC-----cEeecCEEEEeeC--CCcC
Confidence 7777888899999999999998755 4455665543 5799999999999 4444
No 248
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.39 E-value=7.3e-06 Score=84.95 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 107 KQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
...+...+.+.+.+.+++++.++.++++..+++ ...-+...+...++...+.|+.||+|||.++.
T Consensus 157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g-~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGK-RCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECC-EEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 455666677777788999999999999986542 22223333222334567899999999997654
No 249
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.38 E-value=3.4e-06 Score=85.77 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=82.0
Q ss_pred hHhhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccCCCCce--eeecCCc--------------
Q 013435 27 SAARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--WQLKTYDRL--RLHLPKQ-------------- 88 (443)
Q Consensus 27 ~~~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--w~~~~~~~~--~~~~~~~-------------- 88 (443)
|++.....+||+|||+|.||++||..+. .|.+|+|+||.+..||. |........ .-+.+..
T Consensus 2 ~~~~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d 80 (553)
T PRK07395 2 SSTILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCD 80 (553)
T ss_pred CcccccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCC
Confidence 3445567789999999999999999996 49999999998765542 111100000 0000000
Q ss_pred --------------cccC--CCCCCCC-------------C-----CCCCCCHHHHHHHHHHHHHH-cCCccccceeEEE
Q 013435 89 --------------FCQL--PLMPFPS-------------N-----FPTYPTKQQFLTYLETYTNH-FGLDPVFNTTVVN 133 (443)
Q Consensus 89 --------------~~~~--~~~~~~~-------------~-----~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~ 133 (443)
...+ -..++.. . ...-.+...+...+.+.+.+ .+++++.++.+++
T Consensus 81 ~~lv~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~ 160 (553)
T PRK07395 81 PEAVRFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALS 160 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhh
Confidence 0000 0001100 0 00011456677777776654 4889999999998
Q ss_pred EEEeCC-CCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 134 AEYDHL-SRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 134 i~~~~~-~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+..+++ ....-+.... .+....+.++.||+|||..+.
T Consensus 161 Li~~~~~g~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 161 LWLEPETGRCQGISLLY--QGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred heecCCCCEEEEEEEEE--CCeEEEEEcCEEEEcCCCCcc
Confidence 876531 1222233322 223357899999999997543
No 250
>PRK14694 putative mercuric reductase; Provisional
Probab=98.35 E-value=5.1e-06 Score=83.25 Aligned_cols=98 Identities=18% Similarity=0.261 Sum_probs=75.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+. ....++...
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~----------------------------------~~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS----------------------------------QEDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC----------------------------------CCCHHHHHH
Confidence 4689999999999999999999999999998643210 012456677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+..++.|++++.++.|.+++.++ ..+.+.+.+ .++.+|.||+|+|. .|+.
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~~~--~~~~v~~~~------~~i~~D~vi~a~G~--~pn~ 275 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDYNG--REFILETNA------GTLRAEQLLVATGR--TPNT 275 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEECC------CEEEeCEEEEccCC--CCCc
Confidence 7888888899999999999998765 455555433 46999999999994 4443
No 251
>PTZ00367 squalene epoxidase; Provisional
Probab=98.35 E-value=2.7e-06 Score=86.21 Aligned_cols=36 Identities=31% Similarity=0.354 Sum_probs=33.5
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
...+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 457899999999999999999999999999999975
No 252
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.35 E-value=1.5e-05 Score=81.75 Aligned_cols=39 Identities=21% Similarity=0.458 Sum_probs=36.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS 71 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg 71 (443)
..+||||||+|.+|+++|+.+++.|.+|+|+|+.+..||
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 457999999999999999999999999999999987766
No 253
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.34 E-value=5.5e-06 Score=82.86 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=77.8
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTYL 114 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (443)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++...+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~l 224 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------------------G--EDADAAEVL 224 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------------------C--CCHHHHHHH
Confidence 5799999999999999999999999999998764311 0 124566777
Q ss_pred HHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 115 ETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 115 ~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
.+..++.+++++.+++|.+++..+ +.+.+...++ .++.+|.||+|+| .+|+.
T Consensus 225 ~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~g-----~~l~~D~vl~a~G--~~pn~ 276 (466)
T PRK07845 225 EEVFARRGMTVLKRSRAESVERTG--DGVVVTLTDG-----RTVEGSHALMAVG--SVPNT 276 (466)
T ss_pred HHHHHHCCcEEEcCCEEEEEEEeC--CEEEEEECCC-----cEEEecEEEEeec--CCcCC
Confidence 788888899999999999998665 4555665544 5799999999999 45543
No 254
>PLN02507 glutathione reductase
Probab=98.34 E-value=6.1e-06 Score=83.04 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=78.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+|+++.+.+- +. ...++...
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG--FDDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc--cCHHHHHH
Confidence 4689999999999999999999999999999876321 00 12566777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.+++++.++.|.+++..+ +.+.+...++ .++.+|.|++|+|. +|+.
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~v~~~~g-----~~i~~D~vl~a~G~--~pn~ 302 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTKTE--GGIKVITDHG-----EEFVADVVLFATGR--APNT 302 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeC--CeEEEEECCC-----cEEEcCEEEEeecC--CCCC
Confidence 7777888899999999999998765 4555655443 57999999999994 4443
No 255
>PRK07846 mycothione reductase; Reviewed
Probab=98.34 E-value=5.4e-06 Score=82.49 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=74.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-------------------------------~--~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-------------------------------H--LDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------------------c--cCHHHHHH
Confidence 46899999999999999999999999999998764310 0 12445555
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
+.+.. +.+++++++++|++++..+ +.+.+.+.++ .++.+|.||+|+| .+|+..
T Consensus 213 l~~l~-~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~i~~D~vl~a~G--~~pn~~ 265 (451)
T PRK07846 213 FTELA-SKRWDVRLGRNVVGVSQDG--SGVTLRLDDG-----STVEADVLLVATG--RVPNGD 265 (451)
T ss_pred HHHHH-hcCeEEEeCCEEEEEEEcC--CEEEEEECCC-----cEeecCEEEEEEC--CccCcc
Confidence 55544 3578889999999998665 4555665543 5799999999999 455443
No 256
>PRK14727 putative mercuric reductase; Provisional
Probab=98.33 E-value=7.1e-06 Score=82.39 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=74.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+. ....++...
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~----------------------------------~~d~~~~~~ 233 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF----------------------------------REDPLLGET 233 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC----------------------------------cchHHHHHH
Confidence 3689999999999999999999999999998743110 012456777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.|++++++++|+.++..+ +.+.+...+ .++.+|.||+|+|.
T Consensus 234 l~~~L~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~------g~i~aD~VlvA~G~ 281 (479)
T PRK14727 234 LTACFEKEGIEVLNNTQASLVEHDD--NGFVLTTGH------GELRAEKLLISTGR 281 (479)
T ss_pred HHHHHHhCCCEEEcCcEEEEEEEeC--CEEEEEEcC------CeEEeCEEEEccCC
Confidence 7888888899999999999998765 555565543 46899999999994
No 257
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.33 E-value=5.5e-06 Score=82.55 Aligned_cols=96 Identities=23% Similarity=0.259 Sum_probs=74.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ....++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~-~~~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP-------------------------------D-SFDKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc-------------------------------h-hcCHHHHHH
Confidence 46899999999999999999999999999988763210 0 012667778
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.+++++.+++|.+++..+ ..+.+.+++ .++.||.+|+|+|.
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~------~~i~~d~vi~a~G~ 244 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIGED--KVEGVVTDK------GEYEADVVIVATGV 244 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEecCC--cEEEEEeCC------CEEEcCEEEECcCC
Confidence 8888888999999999999996533 333344433 46999999999994
No 258
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.33 E-value=1.1e-05 Score=82.74 Aligned_cols=39 Identities=21% Similarity=0.471 Sum_probs=36.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS 71 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg 71 (443)
..+||+|||+|++|+++|..+++.|.+|+|+||....||
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 467999999999999999999999999999999887665
No 259
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.31 E-value=1.5e-05 Score=81.10 Aligned_cols=139 Identities=13% Similarity=0.126 Sum_probs=80.2
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccCCCCcee--eecCCc--------------------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--WQLKTYDRLR--LHLPKQ-------------------- 88 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--w~~~~~~~~~--~~~~~~-------------------- 88 (443)
..+||+|||+|.+|+++|..+++. .+|+|+||....+|. |......... -+.+..
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 85 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRF 85 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHH
Confidence 457999999999999999999886 899999998765552 2221100000 000000
Q ss_pred -------------cccCCCCCCCC-----CC---------------CCCCCHHHHHHHHHHHHHHc-CCccccceeEEEE
Q 013435 89 -------------FCQLPLMPFPS-----NF---------------PTYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNA 134 (443)
Q Consensus 89 -------------~~~~~~~~~~~-----~~---------------~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i 134 (443)
....++....+ .+ ..-.+...+...+.+.+.+. +++++.++.++.+
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~L 165 (536)
T PRK09077 86 IAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDL 165 (536)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeee
Confidence 00011100000 00 00113456667676665554 7899999988877
Q ss_pred EEeC-----CCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 135 EYDH-----LSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 135 ~~~~-----~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
-..+ +....-|...+...++...+.++.||+|||..+.
T Consensus 166 i~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 166 ITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASK 208 (536)
T ss_pred eecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence 6532 1122224433333345578999999999997653
No 260
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.31 E-value=6.2e-06 Score=82.04 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=76.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PR--EDRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CC--cCHHHHHH
Confidence 4589999999999999999999999999999876431 00 12456677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
+.+.+++.|+++++++.|.+++..+ +.+.+...+ .++.+|.|++|+| .+|+
T Consensus 205 l~~~l~~~gV~v~~~~~v~~i~~~~--~~v~v~~~~------g~i~~D~vl~a~G--~~pn 255 (441)
T PRK08010 205 IATILRDQGVDIILNAHVERISHHE--NQVQVHSEH------AQLAVDALLIASG--RQPA 255 (441)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEcC------CeEEeCEEEEeec--CCcC
Confidence 7788888899999999999998765 555555443 3589999999999 4444
No 261
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.30 E-value=2.8e-05 Score=79.87 Aligned_cols=41 Identities=17% Similarity=0.380 Sum_probs=37.2
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS 71 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg 71 (443)
....+||+|||+|.+|+++|..+.++|.+|+|||+.+..||
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 45678999999999999999999999999999999876665
No 262
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.30 E-value=1.1e-05 Score=80.91 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=75.8
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTYL 114 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (443)
.+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ...++...+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~-------------------------------~--~d~~~~~~~ 221 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP-------------------------------A--ADKDIVKVF 221 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC-------------------------------c--CCHHHHHHH
Confidence 5899999999999999999999999999998764310 0 124566666
Q ss_pred HHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 115 ETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 115 ~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
.+..++. +.++.++.|+.++..+ +.+.+...++. ++..++.+|.||+|+| .+|+.
T Consensus 222 ~~~l~~~-v~i~~~~~v~~i~~~~--~~~~v~~~~~~-~~~~~i~~D~vi~a~G--~~pn~ 276 (471)
T PRK06467 222 TKRIKKQ-FNIMLETKVTAVEAKE--DGIYVTMEGKK-APAEPQRYDAVLVAVG--RVPNG 276 (471)
T ss_pred HHHHhhc-eEEEcCCEEEEEEEcC--CEEEEEEEeCC-CcceEEEeCEEEEeec--ccccC
Confidence 6666666 8888999999998765 44555544321 1225799999999999 45554
No 263
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.27 E-value=1.1e-05 Score=80.24 Aligned_cols=102 Identities=18% Similarity=0.126 Sum_probs=77.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-------------------------------~--~d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-------------------------------S--FDSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-------------------------------c--cCHHHHHH
Confidence 35899999999999999999999999999998764310 0 12456677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+..++.+++++.++.|++++...+ +.+.+...++ ...+.+|.||+|+| ..|+.
T Consensus 213 ~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~v~~~~g----~~~i~~D~vi~a~G--~~pn~ 267 (450)
T TIGR01421 213 ITEEYEKEGINVHKLSKPVKVEKTVE-GKLVIHFEDG----KSIDDVDELIWAIG--RKPNT 267 (450)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEeCC-ceEEEEECCC----cEEEEcCEEEEeeC--CCcCc
Confidence 77778888999999999999986542 3344555432 14799999999999 45543
No 264
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.27 E-value=2.6e-05 Score=79.51 Aligned_cols=40 Identities=28% Similarity=0.477 Sum_probs=36.5
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
...+||||||+| +|+++|..+++.|.+|+|+||.+.+||.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 457899999999 8999999999999999999999878774
No 265
>PRK13748 putative mercuric reductase; Provisional
Probab=98.27 E-value=9e-06 Score=83.55 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=76.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+. . ...++...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--------------------------------~--~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF--------------------------------R--EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc--------------------------------c--cCHHHHHH
Confidence 4689999999999999999999999999998753210 0 12556777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.|++++.++.|.+++..+ +.+.+.+.+ ..+.+|.||+|+| ..|+.
T Consensus 316 l~~~l~~~gI~i~~~~~v~~i~~~~--~~~~v~~~~------~~i~~D~vi~a~G--~~pn~ 367 (561)
T PRK13748 316 VTAAFRAEGIEVLEHTQASQVAHVD--GEFVLTTGH------GELRADKLLVATG--RAPNT 367 (561)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEecC------CeEEeCEEEEccC--CCcCC
Confidence 7888888899999999999998655 555555443 4699999999999 45544
No 266
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.27 E-value=1.1e-05 Score=80.38 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=73.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-------------------------------~--~d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-------------------------------H--LDEDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-------------------------------c--cCHHHHHH
Confidence 46899999999999999999999999999998764310 0 11344555
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+..+ .++.++++++|.+++..+ +.+.++..++ .++.+|.|++|+| .+|+.
T Consensus 216 l~~~~~-~gI~i~~~~~V~~i~~~~--~~v~v~~~~g-----~~i~~D~vl~a~G--~~pn~ 267 (452)
T TIGR03452 216 FTEIAK-KKWDIRLGRNVTAVEQDG--DGVTLTLDDG-----STVTADVLLVATG--RVPNG 267 (452)
T ss_pred HHHHHh-cCCEEEeCCEEEEEEEcC--CeEEEEEcCC-----CEEEcCEEEEeec--cCcCC
Confidence 555443 478889999999998765 4555665443 5799999999999 45543
No 267
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.27 E-value=2.2e-05 Score=86.68 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=38.0
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
....+||||||+|.+|+++|..+++.|.+|+|+||.+..||.
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 356789999999999999999999999999999999877763
No 268
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.26 E-value=8.3e-06 Score=80.81 Aligned_cols=95 Identities=25% Similarity=0.339 Sum_probs=73.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. +. ...++...
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~--~~~~~~~~ 184 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KL--FDEEMNQI 184 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------cc--cCHHHHHH
Confidence 46899999999999999999999999999998764310 00 12456677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.|+++++++.|.+++.++ . + +...++ .++.+|.||+|+|.
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~~--~-~-v~~~~g-----~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGEE--R-V-KVFTSG-----GVYQADMVILATGI 231 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecCC--C-E-EEEcCC-----CEEEeCEEEECCCc
Confidence 7778888899999999999997643 2 2 344443 57999999999994
No 269
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.25 E-value=2.2e-06 Score=90.60 Aligned_cols=119 Identities=19% Similarity=0.180 Sum_probs=73.1
Q ss_pred CeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCC---C-cc-cccCCCCceeeec------------CCccc--cCCC
Q 013435 36 GPVIVGAGPSGLATAACLTEK--GVPSLILERANCI---A-SL-WQLKTYDRLRLHL------------PKQFC--QLPL 94 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~---g-g~-w~~~~~~~~~~~~------------~~~~~--~~~~ 94 (443)
+|+||||||+|+++|..|.+. |++|+|+|+++.. | |. ...+....+.... ..... .+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 699999999999999999998 8999999998753 2 10 0000000000000 00000 0000
Q ss_pred CCCCCCCCC--CCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 95 MPFPSNFPT--YPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 95 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
......-.. ...+.++.+.|.+.+.+.+++++++++|++++. ...++|.||.|+|.+|.
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------------~~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA-------------------LAADADLVIASDGLNSR 142 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-------------------hhcCCCEEEEcCCCCHH
Confidence 000000011 246789999999999998999888887754321 23578999999998774
Q ss_pred C
Q 013435 173 E 173 (443)
Q Consensus 173 p 173 (443)
.
T Consensus 143 v 143 (765)
T PRK08255 143 I 143 (765)
T ss_pred H
Confidence 3
No 270
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.24 E-value=1.9e-05 Score=80.62 Aligned_cols=39 Identities=36% Similarity=0.579 Sum_probs=35.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC--CCCc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN--CIAS 71 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~--~~gg 71 (443)
..+||||||+|.+|+++|..+++.|.+|+|+|+.+ ..||
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 46799999999999999999999999999999988 5565
No 271
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.24 E-value=6e-06 Score=81.94 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=74.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++...
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~---------------------------------~~d~~~~~~ 194 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK---------------------------------LMDADMNQP 194 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch---------------------------------hcCHHHHHH
Confidence 46899999999999999999999999999998764311 012456677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.|++++.+++|.+++. .. +++.++ ..+.+|.|++|+|. +|+.
T Consensus 195 l~~~l~~~gI~i~~~~~v~~i~~----~~--v~~~~g-----~~~~~D~vl~a~G~--~pn~ 243 (438)
T PRK13512 195 ILDELDKREIPYRLNEEIDAING----NE--VTFKSG-----KVEHYDMIIEGVGT--HPNS 243 (438)
T ss_pred HHHHHHhcCCEEEECCeEEEEeC----CE--EEECCC-----CEEEeCEEEECcCC--CcCh
Confidence 77778888999999999998863 22 555544 57899999999994 5443
No 272
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.23 E-value=1.4e-05 Score=80.50 Aligned_cols=99 Identities=24% Similarity=0.198 Sum_probs=75.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+. . ...++.+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~--------------------------------~--~d~~~~~~ 227 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR--------------------------------G--FDRQCSEK 227 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc--------------------------------c--CCHHHHHH
Confidence 3589999999999999999999999999998642110 0 12456677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.+++++.++.+..++..+ +.+.+...++ .++.+|.||+|+| .+|+.
T Consensus 228 l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~v~~~~g-----~~i~~D~vl~a~G--~~pn~ 280 (499)
T PTZ00052 228 VVEYMKEQGTLFLEGVVPINIEKMD--DKIKVLFSDG-----TTELFDTVLYATG--RKPDI 280 (499)
T ss_pred HHHHHHHcCCEEEcCCeEEEEEEcC--CeEEEEECCC-----CEEEcCEEEEeeC--CCCCc
Confidence 7777888899999999898888654 3444555444 4689999999999 45543
No 273
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.23 E-value=1.5e-05 Score=79.84 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=76.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++...+ +. ...++.++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l--------------------------------~~--~d~~~~~~ 225 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL--------------------------------RG--FDQDCANK 225 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccc--------------------------------cc--cCHHHHHH
Confidence 357999999999999999999999999999874211 00 12566777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.++++++++.+..++..+ +.+.++..++. +..++.+|.||+|+| ..|+.
T Consensus 226 l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~~~--~~~~i~~D~vl~a~G--~~pn~ 281 (484)
T TIGR01438 226 VGEHMEEHGVKFKRQFVPIKVEQIE--AKVKVTFTDST--NGIEEEYDTVLLAIG--RDACT 281 (484)
T ss_pred HHHHHHHcCCEEEeCceEEEEEEcC--CeEEEEEecCC--cceEEEeCEEEEEec--CCcCC
Confidence 7888888899999999888888655 44445554421 124799999999999 44443
No 274
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.22 E-value=4.8e-05 Score=77.76 Aligned_cols=38 Identities=24% Similarity=0.491 Sum_probs=35.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS 71 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg 71 (443)
.+||+|||+|++|+++|..++++|.+|+|||+.+.+||
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 57999999999999999999999999999999887665
No 275
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.21 E-value=2.4e-05 Score=78.37 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=76.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ....++...
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP---------------------------------LEDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------------------------------chhHHHHHH
Confidence 46899999999999999999999999999998764321 012566777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
+.+..++. ++++++++|.+++..++ ..+.++..++ +..++.+|.||+|+| ..|+..
T Consensus 216 ~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~~~~~~~---~~~~i~~D~vi~a~G--~~p~~~ 271 (460)
T PRK06292 216 AQKILSKE-FKIKLGAKVTSVEKSGD-EKVEELEKGG---KTETIEADYVLVATG--RRPNTD 271 (460)
T ss_pred HHHHHhhc-cEEEcCCEEEEEEEcCC-ceEEEEEcCC---ceEEEEeCEEEEccC--CccCCC
Confidence 77777777 89999999999986542 2444432222 236799999999999 455544
No 276
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.20 E-value=1e-05 Score=85.97 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=77.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+|+++.+.+.. . ....+....
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------------------~-~ld~~~~~~ 192 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------------------E-QLDQMGGEQ 192 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-------------------------------h-hcCHHHHHH
Confidence 45799999999999999999999999999998764210 0 012556677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
+.+..++.|++++.++.+++|...+......+...++ ..+.+|.||+|+|. +|+
T Consensus 193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG-----~~i~~D~Vv~A~G~--rPn 246 (847)
T PRK14989 193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG-----SELEVDFIVFSTGI--RPQ 246 (847)
T ss_pred HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC-----CEEEcCEEEECCCc--ccC
Confidence 7888888999999999999997643223344555555 68999999999994 544
No 277
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.20 E-value=3.3e-05 Score=79.14 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=30.5
Q ss_pred CeEEECCCHHHHHHHHHHH----HcCCCEEEEecCCC
Q 013435 36 GPVIVGAGPSGLATAACLT----EKGVPSLILERANC 68 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~----~~g~~v~iie~~~~ 68 (443)
||||||+|.||++||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 278
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.20 E-value=1.8e-05 Score=79.27 Aligned_cols=100 Identities=15% Similarity=0.092 Sum_probs=75.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc---CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK---GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
..+++|||||+.|+.+|..+... |.+|+|+++.+.+.. . ...++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-------------------------------~--~d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-------------------------------G--FDSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-------------------------------c--cCHHH
Confidence 46799999999999999876654 899999998764310 0 12667
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCc
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
.+.+.+.+++.+++++.++.|.+++..++ +...+.+.++ .++.+|.||+|+| ..|+
T Consensus 234 ~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~~~v~~~~g-----~~i~~D~vl~a~G--~~Pn 289 (486)
T TIGR01423 234 RKELTKQLRANGINIMTNENPAKVTLNAD-GSKHVTFESG-----KTLDVDVVMMAIG--RVPR 289 (486)
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ceEEEEEcCC-----CEEEcCEEEEeeC--CCcC
Confidence 77778888888999999999999986542 3344555443 5799999999999 4444
No 279
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.20 E-value=1.9e-06 Score=86.38 Aligned_cols=49 Identities=29% Similarity=0.402 Sum_probs=41.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCce
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRL 81 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~ 81 (443)
+.+||||||||+.||++|..|+++|++|+|+|+++.+||......+.++
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf 50 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGF 50 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccce
Confidence 4689999999999999999999999999999999999996554333333
No 280
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.19 E-value=5.7e-05 Score=77.15 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=36.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
..+||+|||+|.+|+++|..+++.|.+|+|||+....||.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 3679999999999999999999999999999998776653
No 281
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.17 E-value=1.2e-05 Score=85.40 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=76.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+|+++.+.+.. . .........
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------------------~-~ld~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------------------K-QLDQTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------------------h-hcCHHHHHH
Confidence 46799999999999999999999999999998763210 0 012455666
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+..++.|+++++++.++++.... ....|.+.++ .++.+|.||+|+|. +|+.
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~~--~~~~v~~~dG-----~~i~~D~Vi~a~G~--~Pn~ 240 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGAT--KADRIRFKDG-----SSLEADLIVMAAGI--RPND 240 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcCC--ceEEEEECCC-----CEEEcCEEEECCCC--CcCc
Confidence 7777788899999999998887543 3344666665 68999999999994 5443
No 282
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=2e-06 Score=85.47 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=39.6
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
...+.++|||||||++||+||++|.+.|++|+|+|..+.+||.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 4566779999999999999999999999999999999999983
No 283
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.16 E-value=7.8e-05 Score=75.49 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=34.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS 71 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg 71 (443)
.+||||||+| +|+++|.++++.|.+|+|||+.+..||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5799999999 999999999999999999999886554
No 284
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.16 E-value=1.9e-05 Score=77.82 Aligned_cols=98 Identities=23% Similarity=0.350 Sum_probs=78.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCH-HHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTK-QQFLT 112 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 112 (443)
..+++|||+|+.|+.+|..|.++|++++++|+.+.+++. .. ..+.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~---------------------------------~~~~~~~~ 182 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ---------------------------------LLDPEVAE 182 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh---------------------------------hhhHHHHH
Confidence 578999999999999999999999999999998866531 11 67788
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+..+.++++++.+..+.+++...+..... +....+ ..+.+|.+++++|.
T Consensus 183 ~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~g~ 235 (415)
T COG0446 183 ELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG-----EEIKADLVIIGPGE 235 (415)
T ss_pred HHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC-----cEEEeeEEEEeecc
Confidence 88888899999999999999999876321111 333333 78999999999994
No 285
>PTZ00058 glutathione reductase; Provisional
Probab=98.15 E-value=2.7e-05 Score=79.05 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=76.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RK--FDETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------cc--CCHHHHHH
Confidence 5689999999999999999999999999999876431 00 12556677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+..++.+++++.+..|.+++..++ ..+.+...++ + .++.+|.|++|+| ..|+.
T Consensus 284 l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~~~~~---~-~~i~aD~VlvA~G--r~Pn~ 338 (561)
T PTZ00058 284 LENDMKKNNINIITHANVEEIEKVKE-KNLTIYLSDG---R-KYEHFDYVIYCVG--RSPNT 338 (561)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEecCC-CcEEEEECCC---C-EEEECCEEEECcC--CCCCc
Confidence 77777888999999999999986542 2333433221 1 5799999999999 34443
No 286
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.14 E-value=8.5e-05 Score=76.29 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=37.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
...+||+|||+|.+|+++|..++++|.+|+|+|+....||..
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 346799999999999999999999999999999988777643
No 287
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.14 E-value=3e-05 Score=79.97 Aligned_cols=107 Identities=16% Similarity=0.081 Sum_probs=75.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ...++..+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-------------------------------~--~d~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-------------------------------L--LDADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-------------------------------c--CCHHHHHH
Confidence 35799999999999999999999999999999774321 0 12455666
Q ss_pred HHHHH-HHcCCccccceeEEEEEEeCCCCeEEEEEeecC---CC-------cEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYT-NHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGL---KQ-------EETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~-~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~---~~-------~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.... ++.+++++.++.|.+++..++...+.+...+.. .+ +..++.+|.||+|+| .+|+.
T Consensus 359 l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG--r~Pnt 429 (659)
T PTZ00153 359 FERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG--RKPNT 429 (659)
T ss_pred HHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEEC--cccCC
Confidence 66643 567899999999999987543223445433211 00 114799999999999 45554
No 288
>PRK07208 hypothetical protein; Provisional
Probab=98.12 E-value=6.8e-06 Score=82.75 Aligned_cols=44 Identities=32% Similarity=0.511 Sum_probs=40.0
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL 75 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 75 (443)
.+++||+|||||++|+++|+.|.++|++++|+|+.+.+||.++.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 35678999999999999999999999999999999999996654
No 289
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.11 E-value=2e-05 Score=72.96 Aligned_cols=140 Identities=21% Similarity=0.200 Sum_probs=77.0
Q ss_pred hhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC-----------CCcccccC------CC--------Cceee
Q 013435 29 ARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANC-----------IASLWQLK------TY--------DRLRL 83 (443)
Q Consensus 29 ~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~-----------~gg~w~~~------~~--------~~~~~ 83 (443)
+.....+||||||||.+|.++|..|++.|.+|.++||+-. +||...-. +. .+..+
T Consensus 40 ~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~i 119 (509)
T KOG1298|consen 40 ARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAI 119 (509)
T ss_pred hccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEE
Confidence 4456778999999999999999999999999999999642 23211100 00 01111
Q ss_pred ecCCc--cccCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEE-EEEeecCCCcEEEE
Q 013435 84 HLPKQ--FCQLPLMPFPSNFPTY-PTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWR-VKTQQGLKQEETVY 158 (443)
Q Consensus 84 ~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~i 158 (443)
..... ...+|...++.+..+. -....+.+.+++.+... ++++..+ .|.++-.++ +.+. |+..+ +++++.+.
T Consensus 120 fk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~--gvvkGV~yk~-k~gee~~~ 195 (509)
T KOG1298|consen 120 FKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEE--GVVKGVTYKN-KEGEEVEA 195 (509)
T ss_pred EeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhcc--CeEEeEEEec-CCCceEEE
Confidence 11111 1122222222221111 12355666666655443 3333333 354444443 3221 33333 33455889
Q ss_pred EeCEEEEccCCCCC
Q 013435 159 LCQWLIVATGENAE 172 (443)
Q Consensus 159 ~a~~vIiAtG~~~~ 172 (443)
.|-.-|+|.|++|.
T Consensus 196 ~ApLTvVCDGcfSn 209 (509)
T KOG1298|consen 196 FAPLTVVCDGCFSN 209 (509)
T ss_pred ecceEEEecchhHH
Confidence 99999999998764
No 290
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.10 E-value=7.8e-06 Score=76.77 Aligned_cols=37 Identities=43% Similarity=0.563 Sum_probs=33.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIA 70 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g 70 (443)
..+|+|||||.+|+++|..|.+.|++++|+|+...+-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 4689999999999999999999999999999976543
No 291
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.06 E-value=5.7e-05 Score=76.40 Aligned_cols=135 Identities=18% Similarity=0.150 Sum_probs=77.7
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC-CCc--ccccCCCCcee--eecCCc------------------
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANC-IAS--LWQLKTYDRLR--LHLPKQ------------------ 88 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~-~gg--~w~~~~~~~~~--~~~~~~------------------ 88 (443)
...+||+|||+|.+|+++|..++ +.+|+|+|+... .|| .|.+....... -+.+..
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v 84 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVA 84 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 45679999999999999999996 569999999875 333 22221110000 000000
Q ss_pred ---------------cccCCCCCCCCC-C----------------CCCCCHHHHHHHHHHHHHHc-CCccccceeEEEEE
Q 013435 89 ---------------FCQLPLMPFPSN-F----------------PTYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAE 135 (443)
Q Consensus 89 ---------------~~~~~~~~~~~~-~----------------~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~ 135 (443)
-+..++....+. + .+..+...+...+.+.+.+. +++++.++.|+++.
T Consensus 85 ~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li 164 (513)
T PRK07512 85 ALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLL 164 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhhee
Confidence 000011000000 0 01124566777777777654 78999998898876
Q ss_pred EeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 136 YDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 136 ~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.++ +.+ -+...+. ++...+.|+.||+|||..+.
T Consensus 165 ~~~--g~v~Gv~~~~~--~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 165 VDD--GAVAGVLAATA--GGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred ecC--CEEEEEEEEeC--CeEEEEECCEEEEcCCCCcC
Confidence 544 332 2333321 12247999999999997543
No 292
>PLN02546 glutathione reductase
Probab=98.05 E-value=5.2e-05 Score=77.03 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=75.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ...++..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-------------------------------~--~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-------------------------------G--FDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-------------------------------c--cCHHHHHH
Confidence 46899999999999999999999999999998764310 0 12566677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+..++.|++++.++.+.++...++ +.+.+...++ ....+|.||+|+|. +|+.
T Consensus 299 l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v~v~~~~g-----~~~~~D~Viva~G~--~Pnt 352 (558)
T PLN02546 299 VAEQMSLRGIEFHTEESPQAIIKSAD-GSLSLKTNKG-----TVEGFSHVMFATGR--KPNT 352 (558)
T ss_pred HHHHHHHCCcEEEeCCEEEEEEEcCC-CEEEEEECCe-----EEEecCEEEEeecc--ccCC
Confidence 77778888999999999999976542 3444443321 34458999999994 4443
No 293
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=9e-06 Score=78.84 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=74.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC-CCcccccCCCCcee-------eecC---------CccccCCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANC-IASLWQLKTYDRLR-------LHLP---------KQFCQLPLMP 96 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~-~gg~w~~~~~~~~~-------~~~~---------~~~~~~~~~~ 96 (443)
.|||+|||||.||+.+|...++.|.++.++--+.. +|-..++....+.. .+.. ....++.-+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 48999999999999999999999999988876442 33222222111110 0000 0011111111
Q ss_pred CCCCCCCC-----CCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCC
Q 013435 97 FPSNFPTY-----PTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 97 ~~~~~~~~-----~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~ 170 (443)
........ .....+...+++..+.. ++.++ ...|+++..+++....-|.+..| ..+.|+.||++||.+
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G-----~~~~a~aVVlTTGTF 157 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADG-----PEFHAKAVVLTTGTF 157 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCC-----CeeecCEEEEeeccc
Confidence 00011111 23344555565554443 44443 44577776655322455777776 899999999999953
No 294
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.04 E-value=3.1e-05 Score=76.50 Aligned_cols=92 Identities=24% Similarity=0.281 Sum_probs=71.7
Q ss_pred CCeEEECCCHHHHHHHHHHHH--------------cCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCC
Q 013435 35 PGPVIVGAGPSGLATAACLTE--------------KGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSN 100 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~--------------~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (443)
.+++|||||+.|+.+|..|.. .+.+|+++++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 479999999999999999876 367899999876431
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCC
Q 013435 101 FPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~ 170 (443)
+. ....+.+++.+.+++.|++++.+++|.+++.+ . |.++++ .++.+|.+|+|+|..
T Consensus 224 -~~--~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----~--v~~~~g-----~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 224 -GS--FDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----E--VVLKDG-----EVIPTGLVVWSTGVG 279 (424)
T ss_pred -cc--CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----E--EEECCC-----CEEEccEEEEccCCC
Confidence 10 12467778888888899999999999988642 2 556655 689999999999953
No 295
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.04 E-value=4.7e-05 Score=68.92 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=80.2
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCC-----------CCceeeecCCc----------------
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKT-----------YDRLRLHLPKQ---------------- 88 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~-----------~~~~~~~~~~~---------------- 88 (443)
-|+|||+|.||++++..+...+-.|+++|++...||..-... ..-...+++.-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 499999999999999999999878999999998887432210 00000000000
Q ss_pred --------------------------cccCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHc------CCccccceeEEE
Q 013435 89 --------------------------FCQLPLMPFPSNF---PTYPTKQQFLTYLETYTNHF------GLDPVFNTTVVN 133 (443)
Q Consensus 89 --------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~------~~~v~~~~~V~~ 133 (443)
..++.....|... ...|+.-++...+....+++ -+++..+++|+.
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~ 170 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD 170 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence 0011111112111 11234455555554443332 245678999999
Q ss_pred EEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 134 AEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 134 i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
|.++++ ...-|...+ ..++...+.++.||+|||.++.
T Consensus 171 il~n~g-kVsgVeymd-~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 171 ILRNNG-KVSGVEYMD-ASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred eecCCC-eEEEEEEEc-CCCCccceecCceEEecCCcCc
Confidence 997663 333444443 2334578999999999998654
No 296
>PRK10262 thioredoxin reductase; Provisional
Probab=97.99 E-value=6.8e-05 Score=71.27 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=72.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|..|+.+|..|.+.+.+|+++++.+.+. ....+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~ 189 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIK 189 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHH
Confidence 35689999999999999999999999999999875321 1133445
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecC-CCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGL-KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~-~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+..++.+++++.++.+++++..+. ..-.|+..++. .++..++.+|.||+|+|.
T Consensus 190 ~~~~~l~~~gV~i~~~~~v~~v~~~~~-~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 190 RLMDKVENGNIILHTNRTLEEVTGDQM-GVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred HHHhhccCCCeEEEeCCEEEEEEcCCc-cEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 566666777899999999999976431 11124444321 123368999999999994
No 297
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.98 E-value=0.00012 Score=72.76 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 107 KQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
...+.+.+.+.+++.++++++++.|+++..+++.+.+ .|.... +...+.++.||+|||.++
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~----~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV----GTHRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC----CcEEEEcCEEEEcCCCcc
Confidence 4567888888889999999999999999875311332 233322 115899999999999654
No 298
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.98 E-value=4.8e-05 Score=72.76 Aligned_cols=110 Identities=20% Similarity=0.244 Sum_probs=88.7
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
......|+++|+|..|+.+|..|...+.+|++|++++.+- +. .....+
T Consensus 210 ~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-------------------------------~~-lf~~~i 257 (478)
T KOG1336|consen 210 IQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-------------------------------PR-LFGPSI 257 (478)
T ss_pred hccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-------------------------------hh-hhhHHH
Confidence 3446679999999999999999999999999999987320 00 234677
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCC
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIE 179 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~ 179 (443)
.+...++.++.++++..++.+.+++.+.+.....|.+.++ .++.||.||+.+| .+|+...+.
T Consensus 258 ~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg-----~~l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 258 GQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG-----KTLEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC-----CEeccCeEEEeec--ccccccccc
Confidence 7888888888899999999999998877556666777777 8999999999999 577666554
No 299
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.97 E-value=9.5e-06 Score=77.87 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=37.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
++||+|||||++|+++|..|++.|.+|+|+|+.+..||.+
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~ 40 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNC 40 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCce
Confidence 4799999999999999999999999999999999999843
No 300
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.96 E-value=2e-05 Score=71.73 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=32.2
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..-+|+|||+|++|+-+|..|++.|.+|.++.|++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 34579999999999999999999999999999987
No 301
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.96 E-value=3.1e-05 Score=70.76 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=32.0
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
...+|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 34579999999999999999999999999999876
No 302
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.95 E-value=8e-05 Score=75.49 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=71.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+|+|||||+.|+.+|..|++.+.+|+++++.+.+. .. ..
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~------------------------------------~~---~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK------------------------------------AD---KV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC------------------------------------hh---HH
Confidence 4589999999999999999999999999998765321 01 12
Q ss_pred HHHHHHH-cCCccccceeEEEEEEeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNH-FGLDPVFNTTVVNAEYDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+...+ .|++++.++.++++...+ +.. .|+..++..++...+.+|.|++|+| ..|+.
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G--~~Pn~ 452 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIG--LVPNT 452 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeC--CcCCc
Confidence 3333443 589999999999887653 332 2555554334446899999999999 45543
No 303
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.90 E-value=1.7e-05 Score=80.07 Aligned_cols=39 Identities=33% Similarity=0.422 Sum_probs=36.7
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
+||+|||||.+|+++|..|+++|++|+|+|+++.+||..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 39 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSA 39 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCce
Confidence 699999999999999999999999999999999988753
No 304
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.90 E-value=1.5e-05 Score=79.61 Aligned_cols=40 Identities=30% Similarity=0.420 Sum_probs=36.6
Q ss_pred CeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCccccc
Q 013435 36 GPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASLWQL 75 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~ 75 (443)
+|+|||||++|++||+.|.+.| ++|+|+|+++.+||..+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 6999999999999999999987 899999999999995543
No 305
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.90 E-value=1.6e-05 Score=72.02 Aligned_cols=42 Identities=33% Similarity=0.314 Sum_probs=38.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL 75 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 75 (443)
++|++|||+|.+|+.+|..|+++|.+|.|+|+.+++||-.+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 579999999999999999999999999999999999996654
No 306
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.89 E-value=9.7e-05 Score=69.34 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=68.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||+|+.|+.+|..|.+.+.+|+++++.+.+. ...
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~~~---- 180 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------AEK---- 180 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------cCH----
Confidence 34689999999999999999999999999999865220 011
Q ss_pred HHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+.+. +++++.++.+.+++..+ ....+...+...++..++.+|.+|+|+|.
T Consensus 181 ~~~~~l~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 181 ILLDRLRKNPNIEFLWNSTVKEIVGDN--KVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred HHHHHHHhCCCeEEEeccEEEEEEccC--cEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 222334445 88999999999987643 33234443322234478999999999994
No 307
>PRK07233 hypothetical protein; Provisional
Probab=97.88 E-value=1.6e-05 Score=78.96 Aligned_cols=38 Identities=32% Similarity=0.436 Sum_probs=35.9
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
+|+|||||++|+++|+.|.+.|++|+|+|+++.+||..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 58999999999999999999999999999999999853
No 308
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.88 E-value=2e-05 Score=79.58 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=37.1
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccc
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQ 74 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~ 74 (443)
.||+|||||++|+++|..|++.|++|+|+|+++.+||...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~ 41 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAG 41 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 5899999999999999999999999999999999998543
No 309
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.88 E-value=0.00016 Score=66.13 Aligned_cols=45 Identities=31% Similarity=0.445 Sum_probs=37.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHc----CCCEEEEecCC---------CCCcccccC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEK----GVPSLILERAN---------CIASLWQLK 76 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~----g~~v~iie~~~---------~~gg~w~~~ 76 (443)
....||+|||||-.|.+.|.-|.++ |++|+++|+++ ..||...+.
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF 141 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF 141 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeec
Confidence 3578999999999999999998775 68999999988 346665553
No 310
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.87 E-value=5.1e-05 Score=73.66 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=32.6
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIA 70 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g 70 (443)
.+|+|||||.+|+.+|..|++.|++|+|+|+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999876543
No 311
>PLN02676 polyamine oxidase
Probab=97.87 E-value=2.8e-05 Score=77.92 Aligned_cols=49 Identities=35% Similarity=0.518 Sum_probs=41.9
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYD 79 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~ 79 (443)
+...+||+|||||++|+++|.+|.++|. +++|+|+.+.+||.+....++
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~ 72 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA 72 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCC
Confidence 4557899999999999999999999998 699999999999976554333
No 312
>PLN02268 probable polyamine oxidase
Probab=97.86 E-value=1.7e-05 Score=78.88 Aligned_cols=38 Identities=26% Similarity=0.512 Sum_probs=35.6
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
.+|+|||||.+||++|+.|.+.|++|+|+|+++.+||.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 37999999999999999999999999999999988884
No 313
>PLN02576 protoporphyrinogen oxidase
Probab=97.85 E-value=2.4e-05 Score=79.16 Aligned_cols=38 Identities=39% Similarity=0.526 Sum_probs=36.1
Q ss_pred CCeEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCCcc
Q 013435 35 PGPVIVGAGPSGLATAACLTEK-GVPSLILERANCIASL 72 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~-g~~v~iie~~~~~gg~ 72 (443)
+||+|||||++||++|+.|.+. |.+|+|+|+++.+||.
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 4899999999999999999999 9999999999999984
No 314
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.85 E-value=2.2e-05 Score=78.74 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=37.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc----CCCEEEEecCCCCCcccc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK----GVPSLILERANCIASLWQ 74 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~----g~~v~iie~~~~~gg~w~ 74 (443)
+.||+|||||++|+++|+.|.++ |++|+|+|+++.+||..+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 46899999999999999999999 999999999999998543
No 315
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.84 E-value=2.2e-05 Score=67.31 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=33.4
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 199 LFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 199 ~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
++....|+|||+|++|+-+|..|++.|.+|.++.|+-
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 3456789999999999999999999999999999875
No 316
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.83 E-value=6.6e-05 Score=74.33 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 104 YPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
......+...+...+.++|..+..+..|++|....+ +.+-|.+.. ..+++.++|-|+|-|++
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-~~~gVeT~~------G~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALVIENCPVTGLHVETD-KFGGVETPH------GSIETECVVNAAGVWAR 244 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-CccceeccC------cceecceEEechhHHHH
Confidence 346677778888889999999999999999998765 556688877 58999999999998654
No 317
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.82 E-value=3.5e-05 Score=74.47 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=39.0
Q ss_pred HhhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 28 AARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 28 ~~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
+-.....+||+|||||..|..||.-.+-+|+++.++|+.+...|+.
T Consensus 61 ~l~~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 61 ALKSTHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred HhhcCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 3344556999999999999999999999999999999998655543
No 318
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.79 E-value=2.8e-05 Score=78.75 Aligned_cols=36 Identities=33% Similarity=0.531 Sum_probs=34.5
Q ss_pred eEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 37 PVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 37 vvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
|+|||||++||++|..|++.|++|+|+|+++.+||.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~ 36 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGR 36 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCc
Confidence 699999999999999999999999999999999885
No 319
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=2.5e-05 Score=75.90 Aligned_cols=40 Identities=30% Similarity=0.455 Sum_probs=37.2
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc---cccc
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS---LWQL 75 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg---~w~~ 75 (443)
+|+|+|||.|||++|+.|+++|++|+|+|+.+.+|| .|..
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~ 44 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRD 44 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeec
Confidence 799999999999999999999999999999999998 4544
No 320
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.75 E-value=0.00016 Score=65.45 Aligned_cols=41 Identities=29% Similarity=0.356 Sum_probs=36.3
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCC
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIA 70 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~g 70 (443)
.....||++|||||+.|++.|++|.-+ +.+|.|+|++..++
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 446789999999999999999999877 78999999988665
No 321
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.75 E-value=0.00021 Score=72.50 Aligned_cols=96 Identities=17% Similarity=0.089 Sum_probs=70.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||||+.|+.+|..|...+.+|+++++.+.+. .. .
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~~----~ 390 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------AD----Q 390 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------cc----H
Confidence 34689999999999999999999999999998875321 00 1
Q ss_pred HHHHHHH-HcCCccccceeEEEEEEeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTN-HFGLDPVFNTTVVNAEYDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~-~~~~~v~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+... ..+++++.++.++++...+ +.. .++..+..+++..++.+|.|++|+|.
T Consensus 391 ~l~~~l~~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 391 VLQDKLRSLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred HHHHHHhcCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 2233333 3589999999999998654 322 24555444445578999999999994
No 322
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.74 E-value=5.7e-05 Score=71.11 Aligned_cols=110 Identities=24% Similarity=0.290 Sum_probs=82.4
Q ss_pred hhHhhhhcCCCeEEECCCHHHHHHHHHHHHc--------------CCCEEEEecCCCCCcccccCCCCceeeecCCcccc
Q 013435 26 ISAARRIMVPGPVIVGAGPSGLATAACLTEK--------------GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQ 91 (443)
Q Consensus 26 ~~~~~~~~~~dvvIIG~G~aGl~~A~~l~~~--------------g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~ 91 (443)
.+.+.+...-.++||||||.|+.+|.+|+.. ..+|+++|+.+..-.
T Consensus 210 l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-------------------- 269 (491)
T KOG2495|consen 210 LSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-------------------- 269 (491)
T ss_pred CChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH--------------------
Confidence 3344555556799999999999999999752 358999998874310
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 92 LPLMPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
.-.+.+.+|.+++..+.++.+..++.|..++... +..... +|+..+|.|-.+|.|||...
T Consensus 270 -------------mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~------I~~~~~-~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 270 -------------MFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT------IHAKTK-DGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred -------------HHHHHHHHHHHHHhhhccceeecccEEEeecCcE------EEEEcC-CCceeeecceEEEecCCCCC
Confidence 1247788899999999999999999998887543 444433 44668999999999999765
Q ss_pred CCcc
Q 013435 172 EEVV 175 (443)
Q Consensus 172 ~p~~ 175 (443)
+|..
T Consensus 330 rp~~ 333 (491)
T KOG2495|consen 330 RPVI 333 (491)
T ss_pred chhh
Confidence 5543
No 323
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.73 E-value=3.4e-05 Score=77.34 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=35.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc------CCCEEEEecCCCCCccc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK------GVPSLILERANCIASLW 73 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~------g~~v~iie~~~~~gg~w 73 (443)
|.+|+|||||++||++|+.|.+. |.+|+|+|+++.+||..
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 45799999999999999999986 37999999999999853
No 324
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.73 E-value=1.2e-05 Score=78.27 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=67.5
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccc-cccC--C---C--ccc----------hhhhhhhhchhHHHH
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQ-EMIG--R---S--TFG----------LSMCLLKWFPVRLVD 265 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~-~~~~--~---~--~~~----------~~~~~~~~~~~~~~~ 265 (443)
+|+|||||++|+-+|..+++.|.+|.++.|.+. +... ...| . . ... -..++...+.....+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~-~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR-VGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS-S-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc-cccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 589999999999999999999999999999973 1110 0000 0 0 000 011111112222222
Q ss_pred HHHHHHHHHHhcC-ccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe--CCc---EEEcCCc
Q 013435 266 QFLLLMSWLMLGD-TSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT--HHA---AEFIDGS 337 (443)
Q Consensus 266 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~--~~~---v~~~~g~ 337 (443)
.+..+|...-..- .++.+...| .+.+...+-+.+...+.+.+++++.+ |..+. .++ |.++++.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP---------~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~ 151 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFP---------KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGG 151 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEE---------TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTE
T ss_pred HHHHHHHhcCCeEEEcCCCEECC---------CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcc
Confidence 2222333221111 011111111 11223344455666777788999877 66664 344 6666778
Q ss_pred EEcccEEEEccCCCCC
Q 013435 338 IENYDAIILATGYKSN 353 (443)
Q Consensus 338 ~~~~D~vi~atG~~~~ 353 (443)
++.+|.||+|||-..-
T Consensus 152 ~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 152 EYEADAVILATGGKSY 167 (409)
T ss_dssp EEEESEEEE----SSS
T ss_pred cccCCEEEEecCCCCc
Confidence 9999999999997653
No 325
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.73 E-value=0.00019 Score=69.55 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=66.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc----C--CCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK----G--VPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTK 107 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~----g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (443)
..+|+|||||++|+.+|..|.+. | .+|+|+.. +.+. + ...
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~-~~~l-------------------------------~--~~~ 190 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG-ASLL-------------------------------P--GFP 190 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC-Cccc-------------------------------c--cCC
Confidence 45899999999999999999753 4 47888833 2110 0 012
Q ss_pred HHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 108 QQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 108 ~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
..+...+.+.+++.+++++.++.|.+++. +. +.+.++ .++.+|.||+|+|.
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~----~~--v~~~~g-----~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGPD----GA--LILADG-----RTLPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEcC----Ce--EEeCCC-----CEEecCEEEEccCC
Confidence 45566777788888999999999988853 22 555554 68999999999995
No 326
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.72 E-value=0.0002 Score=69.03 Aligned_cols=97 Identities=21% Similarity=0.136 Sum_probs=64.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCC-EEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVP-SLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
..+++|||+|+.|+.+|..|.+.|.+ |+|+++.+... . +...
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~-----------------------------~----~~~~---- 214 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE-----------------------------A----PAGK---- 214 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh-----------------------------C----CCCH----
Confidence 35799999999999999999999987 99998754210 0 0111
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeec---------------CCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQG---------------LKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~---------------~~~~~~~i~a~~vIiAtG~ 169 (443)
...+..+..++++++++.+++++..+ ..-.|+..+. ..++...+.+|.||+|+|.
T Consensus 215 ~~~~~l~~~gi~i~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 215 YEIERLIARGVEFLELVTPVRIIGEG--RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred HHHHHHHHcCCEEeeccCceeeecCC--cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 12233556799998888888887442 2112322211 0123368999999999994
No 327
>PLN02568 polyamine oxidase
Probab=97.69 E-value=5.8e-05 Score=76.39 Aligned_cols=42 Identities=29% Similarity=0.360 Sum_probs=37.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC-----CCEEEEecCCCCCccccc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG-----VPSLILERANCIASLWQL 75 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g-----~~v~iie~~~~~gg~w~~ 75 (443)
.+||+|||||++|+++|..|.+.| ++|+|+|++..+||.+..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 468999999999999999999887 899999999999996543
No 328
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.67 E-value=0.00037 Score=66.44 Aligned_cols=134 Identities=19% Similarity=0.139 Sum_probs=68.8
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCC--CEEEEecCCCCCcccccCCCCce--eeecCC---ccccCCCCC-------
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGV--PSLILERANCIASLWQLKTYDRL--RLHLPK---QFCQLPLMP------- 96 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~--~~~~~~---~~~~~~~~~------- 96 (443)
.....+|+|||||-++..++..|.+.+. +|+++-|...+-.. ....+ ....|. .++.++...
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~----d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~ 262 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPM----DDSPFVNEIFSPEYVDYFYSLPDEERRELLRE 262 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHH
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCC----ccccchhhhcCchhhhhhhcCCHHHHHHHHHH
Confidence 4567789999999999999999999864 89999887643100 00000 000110 000111000
Q ss_pred CCCCCCCCCCHHHH---HH--HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 97 FPSNFPTYPTKQQF---LT--YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 97 ~~~~~~~~~~~~~~---~~--~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
......+-.+.+.+ .+ |-++...+..++++.+++|++++..++ +.|.+++.+...++..++.+|.||+|||.
T Consensus 263 ~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 263 QRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp TGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred hHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 00000001122222 22 122233333466788999999999873 48999998866677789999999999994
No 329
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.66 E-value=6.1e-05 Score=73.35 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=36.8
Q ss_pred CeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCccccc
Q 013435 36 GPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASLWQL 75 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~ 75 (443)
+|+|||||++||++|+.|.+++ .+++|+|+.+.+||..+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 5899999999999999999998 999999999999986544
No 330
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.66 E-value=4.2e-05 Score=73.03 Aligned_cols=142 Identities=22% Similarity=0.243 Sum_probs=67.1
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFG 283 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (443)
+|+|||||..|+|+|..+++.|.+|.++......+.-....+ +.... -...+..++ +.+...+..........+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnp-sigg~---~kg~L~~Ei-dalgg~m~~~aD~~~i~~~ 75 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNP-SIGGI---AKGHLVREI-DALGGLMGRAADETGIHFR 75 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSS-EEEST---THHHHHHHH-HHTT-SHHHHHHHHEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchh-hhccc---cccchhHHH-hhhhhHHHHHHhHhhhhhh
Confidence 489999999999999999999999999943332222111111 00011 111111111 1110001111111111111
Q ss_pred CCCCCCCCc-cccccCCCcccccccchhhhcC-CCeEEecC-CcEEeC-----CcEEEcCCcEEcccEEEEccCC
Q 013435 284 LIRPKLGPL-ELKNVSGKTPVLDVGTLAKIRS-GNIKVCRA-IKRLTH-----HAAEFIDGSIENYDAIILATGY 350 (443)
Q Consensus 284 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~-v~~~~~-----~~v~~~~g~~~~~D~vi~atG~ 350 (443)
+....+++. .-...--....+...+.+.+.. .++.+... |+.+.. .||.+.+|+.+.+|.||+|||.
T Consensus 76 ~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 76 MLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred cccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 111111100 0000000011222333344444 78998877 776643 2688999999999999999999
No 331
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.65 E-value=5.9e-05 Score=75.38 Aligned_cols=37 Identities=30% Similarity=0.511 Sum_probs=35.1
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
+|+|||||++|+++|+.|.++|++++|+|+.+.+||.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence 5899999999999999999999999999999999884
No 332
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.64 E-value=0.00034 Score=69.62 Aligned_cols=98 Identities=19% Similarity=0.141 Sum_probs=66.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+|+|||||..|+-+|..|.+.|.+|+++++.... .+ +.....
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~------------------------------~~---~~~~~~--- 315 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE------------------------------DM---TARVEE--- 315 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc------------------------------cC---CCCHHH---
Confidence 468999999999999999999999999999886521 00 011111
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeE-EEEEe---------ecC------CCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLW-RVKTQ---------QGL------KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-~v~~~---------~~~------~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+.|+++++++.++++...++ +.+ .|+.. ++. .+....+.+|.||+|+|.
T Consensus 316 -~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 316 -IAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred -HHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 2334567999998888888865432 222 23322 110 123358999999999994
No 333
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.63 E-value=0.00022 Score=63.71 Aligned_cols=40 Identities=33% Similarity=0.295 Sum_probs=34.0
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcC------CCEEEEecCCCCCc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKG------VPSLILERANCIAS 71 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g------~~v~iie~~~~~gg 71 (443)
....+|+|+|||+.|+.+|+.|.+++ ..|+|+|+..-.||
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 33467999999999999999999996 79999999875443
No 334
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.63 E-value=6.9e-05 Score=71.68 Aligned_cols=41 Identities=41% Similarity=0.481 Sum_probs=35.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLW 73 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w 73 (443)
...+|+|||||.||+++|.+|.+.|+ +++|+|..+..||.-
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI 61 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence 33489999999999999999998875 999999999888743
No 335
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.59 E-value=8e-05 Score=71.88 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=32.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI 69 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~ 69 (443)
+.||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 468999999999999999999999999999986644
No 336
>PLN02529 lysine-specific histone demethylase 1
Probab=97.53 E-value=0.00011 Score=76.39 Aligned_cols=41 Identities=34% Similarity=0.336 Sum_probs=37.5
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
...++|+|||||++|+++|..|.++|++|+|+|+.+.+||.
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 45679999999999999999999999999999999887774
No 337
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.53 E-value=8.7e-05 Score=73.04 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=40.2
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL 75 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 75 (443)
..|||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 3589999999999999999999999999999999999998765
No 338
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.52 E-value=0.0015 Score=59.68 Aligned_cols=38 Identities=34% Similarity=0.563 Sum_probs=34.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC--CCCc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN--CIAS 71 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~--~~gg 71 (443)
.+||||||+|.+|+-+|.+|+..|.+|+|+|.+. .+||
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 4799999999999999999999999999999855 4565
No 339
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00013 Score=69.84 Aligned_cols=41 Identities=32% Similarity=0.398 Sum_probs=38.0
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
.+..||||||+|.+||++|+.|.+.|++|+|+|.++.+||.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 45678999999999999999999999999999999999883
No 340
>PLN02661 Putative thiazole synthesis
Probab=97.49 E-value=0.00059 Score=64.32 Aligned_cols=36 Identities=22% Similarity=0.627 Sum_probs=31.6
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhc-CCccEEEEecC
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNY-NARPSLVVRDT 235 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~-g~~Vt~i~r~~ 235 (443)
...-+|+|||+|.+|+-+|..|++. |.+|+++.+..
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 3456899999999999999999976 78999999876
No 341
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.48 E-value=0.00013 Score=73.21 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=37.7
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccc
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQ 74 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~ 74 (443)
|||+|||+||+|+.+|..|++.|++|++||+....|+.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 6999999999999999999999999999999998888773
No 342
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.47 E-value=0.00016 Score=77.88 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=33.2
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+++|+|||+|+.|+.+|..|++.|.+||++.+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 58999999999999999999999999999999876
No 343
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.46 E-value=0.00015 Score=72.64 Aligned_cols=37 Identities=38% Similarity=0.432 Sum_probs=35.0
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
+|+|||||++|+++|..|.+.|++|+|+|+++.+||.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCce
Confidence 5899999999999999999999999999999999884
No 344
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.46 E-value=0.00083 Score=68.74 Aligned_cols=97 Identities=22% Similarity=0.189 Sum_probs=63.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. ....+.
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~-----------------------------------~~~~~~- 185 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT-----------------------------------CAKLIA- 185 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc-----------------------------------cCHHHH-
Confidence 34689999999999999999999999999999875320 001111
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEE--EeCE----EEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVY--LCQW----LIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i--~a~~----vIiAtG~ 169 (443)
.......++++++++.|+++..++ ....+...+...++..++ .+|. ||+|+|.
T Consensus 186 --~~~~~~~gV~i~~~~~V~~i~~~~--~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~ 244 (555)
T TIGR03143 186 --EKVKNHPKIEVKFNTELKEATGDD--GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGY 244 (555)
T ss_pred --HHHHhCCCcEEEeCCEEEEEEcCC--cEEEEEEEECCCCCEEEEeccccccceEEEEEeCC
Confidence 222334589999999999987433 221122222212232333 3666 9999994
No 345
>PRK12831 putative oxidoreductase; Provisional
Probab=97.46 E-value=0.0017 Score=64.87 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=65.2
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||||..|+-+|..|.+.|.+|+++.+.... .++. ...++
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~------------------------------~m~a--~~~e~-- 325 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEE------------------------------ELPA--RVEEV-- 325 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcc------------------------------cCCC--CHHHH--
Confidence 3468999999999999999999999999999876421 0010 11222
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEEe---------ecC------CCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKTQ---------QGL------KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~~---------~~~------~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+.|+++++++.+.++...++ +.+. |... ++. .++...+.+|.||+|+|.
T Consensus 326 ---~~a~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~ 394 (464)
T PRK12831 326 ---HHAKEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394 (464)
T ss_pred ---HHHHHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCC
Confidence 123456999888888888865432 2211 2211 111 223357999999999994
No 346
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00091 Score=64.01 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=32.0
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERA 66 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~ 66 (443)
...|||||||||.||+.+|.+.++.|.+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 67899999999999999999999999988888764
No 347
>PLN02612 phytoene desaturase
Probab=97.43 E-value=0.00016 Score=74.08 Aligned_cols=43 Identities=33% Similarity=0.479 Sum_probs=38.6
Q ss_pred hhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 013435 29 ARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS 71 (443)
Q Consensus 29 ~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg 71 (443)
+......+|+|||||++|+++|..|.++|++++++|+.+.+||
T Consensus 88 ~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 88 PRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 3455668999999999999999999999999999999887777
No 348
>PLN02463 lycopene beta cyclase
Probab=97.41 E-value=0.00046 Score=68.23 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=70.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCcccc
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQF 282 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (443)
-+|+|||+|++|+-+|..|++.|.+|.++.+++....|.... -+...+.. +. +.+.+.. ...+....
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g-----~w~~~l~~-lg--l~~~l~~----~w~~~~v~- 95 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYG-----VWVDEFEA-LG--LLDCLDT----TWPGAVVY- 95 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccc-----hHHHHHHH-CC--cHHHHHh----hCCCcEEE-
Confidence 479999999999999999999999999998876322222110 00000000 00 0111100 00000000
Q ss_pred CCCCCCCCCcccc-ccC-CCcccccccchhhhcCCCeEEecC-CcEEeCC----cEEEcCCcEEcccEEEEccCCCCC
Q 013435 283 GLIRPKLGPLELK-NVS-GKTPVLDVGTLAKIRSGNIKVCRA-IKRLTHH----AAEFIDGSIENYDAIILATGYKSN 353 (443)
Q Consensus 283 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~v~v~~~-v~~~~~~----~v~~~~g~~~~~D~vi~atG~~~~ 353 (443)
.+........ ... -....+...+.+.+...+++++.. |.++..+ .|.+++|.++.+|.||.|+|..+.
T Consensus 96 ---~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 96 ---IDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ---EeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0000000000 000 011223334445555556777654 5555432 367788889999999999998875
No 349
>PLN02487 zeta-carotene desaturase
Probab=97.40 E-value=0.00017 Score=73.17 Aligned_cols=42 Identities=29% Similarity=0.252 Sum_probs=37.8
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
-+..+|+|||||++|+++|..|.+.|++|+|+|+.+..||.+
T Consensus 73 g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 73 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence 355699999999999999999999999999999999888743
No 350
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.40 E-value=0.00018 Score=75.30 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=37.8
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
....+|+|||||++|+++|+.|.+.|++|+|+|+++.+||.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 45678999999999999999999999999999999988874
No 351
>PRK06847 hypothetical protein; Provisional
Probab=97.38 E-value=0.00045 Score=67.18 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=32.4
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
.++|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999999873
No 352
>PRK06834 hypothetical protein; Provisional
Probab=97.37 E-value=0.0006 Score=68.58 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=31.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
..|+|||+|++|+-+|..|++.|.+|+++.|.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5799999999999999999999999999999873
No 353
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.37 E-value=9.5e-05 Score=64.97 Aligned_cols=32 Identities=22% Similarity=0.554 Sum_probs=29.1
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
+|+|||||+.|+.+|..|+..+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999995554
No 354
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.34 E-value=0.0003 Score=68.08 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=29.4
Q ss_pred eEEEEccCCCHHHHHHHHhhc--CCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNY--NARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~--g~~Vt~i~r~~ 235 (443)
.|+|||+|..|+.+|..|++. |.+|.++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 489999999999999999987 89999999876
No 355
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.34 E-value=0.00034 Score=74.64 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=33.3
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+++|+|||||+.|+.+|..|++.|.+|+++.+.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 357899999999999999999999999999998876
No 356
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00026 Score=64.53 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=32.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
|.+||+|||||.+|++|+.+|+++|.+..||.+..
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 57899999999999999999999999999998754
No 357
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.32 E-value=0.00015 Score=67.96 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=29.6
Q ss_pred CCeEEECCCHHHHHHHHHHHHcC-CCEEEEecCCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKG-VPSLILERANC 68 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~~ 68 (443)
||+||||+|++|..+|.+|++.+ .+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 79999999999999999999997 69999999764
No 358
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.31 E-value=0.0031 Score=63.04 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=66.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...+|+|||+|..|+.+|..|.+.|. +|+++++.... .+ +....
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~------------------------------~~---~~~~~-- 316 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE------------------------------EM---PASEE-- 316 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cC---CCCHH--
Confidence 35689999999999999999999998 89999876421 00 00111
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCC-CeEEEEEe-------ecC-----CCcEEEEEeCEEEEccCC
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLS-RLWRVKTQ-------QGL-----KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~-~~~~v~~~-------~~~-----~~~~~~i~a~~vIiAtG~ 169 (443)
..+.+.+.|+++++++.+..+..+++. ..+.+... ++. .++..++.+|.||+|+|.
T Consensus 317 --~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 317 --EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred --HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 123456679999999989888765421 11222211 010 123368999999999994
No 359
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.28 E-value=0.00023 Score=62.66 Aligned_cols=30 Identities=17% Similarity=0.428 Sum_probs=24.6
Q ss_pred EEEccCCCHHHHHHHHhhcCCc-cEEEEecC
Q 013435 206 LVVGCGNSGMEVSLDLCNYNAR-PSLVVRDT 235 (443)
Q Consensus 206 ~ViG~G~~~~e~a~~l~~~g~~-Vt~i~r~~ 235 (443)
+|||+|++|+-+|..|.+.|.+ |+++.|.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999999988 99999886
No 360
>PLN02976 amine oxidase
Probab=97.26 E-value=0.00034 Score=76.14 Aligned_cols=44 Identities=30% Similarity=0.425 Sum_probs=39.9
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL 75 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 75 (443)
...++|+|||||++|+++|..|.+.|++++|+|+.+.+||.|+.
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 44589999999999999999999999999999999999997654
No 361
>PLN03000 amine oxidase
Probab=97.23 E-value=0.00044 Score=72.53 Aligned_cols=43 Identities=35% Similarity=0.290 Sum_probs=39.1
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQ 74 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~ 74 (443)
....+|+|||||++|+.+|..|.+.|++++|+|+.+.+||.++
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 3568999999999999999999999999999999999998544
No 362
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.21 E-value=0.0031 Score=63.24 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=64.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
..+|+|||+|+.|+.+|..+.+.|. +|++++........+ .... .++.++. .
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~------------------~~~~----~~~~~~~-----~ 333 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR------------------NKNN----PWPYWPM-----K 333 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc------------------cccc----CCcccch-----H
Confidence 4579999999999999999999986 688776544221100 0000 0011111 1
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEEe-----ec----CCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKTQ-----QG----LKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~~-----~~----~~~~~~~i~a~~vIiAtG~ 169 (443)
...+.+.+.|+.+++++.++++...+ +.+. |+.. ++ ..++..++.+|.||+|+|.
T Consensus 334 ~~~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 334 LEVSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HHHHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 12334556799999998888886433 3321 2221 11 1234478999999999994
No 363
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.20 E-value=0.00041 Score=69.88 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=30.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
..+|+|||+|.+|+++|..|.++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3469999999999999999999999999999764
No 364
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.20 E-value=0.0029 Score=61.70 Aligned_cols=40 Identities=30% Similarity=0.340 Sum_probs=34.4
Q ss_pred CCeEEECCCHHHHHHHHHHHHc----CCCEEEEecCCCCCcccc
Q 013435 35 PGPVIVGAGPSGLATAACLTEK----GVPSLILERANCIASLWQ 74 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~----g~~v~iie~~~~~gg~w~ 74 (443)
.+.-|||+|.|+|++|..|.+. |-+|.|+|+.+..||...
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 4577999999999999999997 469999999998887543
No 365
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.20 E-value=0.00061 Score=67.82 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=32.6
Q ss_pred CCCeEEEEccCCCHHHHHHHHhh--cCCccEEEEecCC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCN--YNARPSLVVRDTV 236 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~--~g~~Vt~i~r~~~ 236 (443)
.+++|+|||+|+.|+.+|..|+. .|.+|+++.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 46789999999999999999987 6899999999883
No 366
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.17 E-value=0.00093 Score=65.44 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=31.6
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+|+|||||.+|+-+|..|++.|.+|+++.|.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 3479999999999999999999999999999987
No 367
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.15 E-value=0.0057 Score=65.11 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=64.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCC-EEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVP-SLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
..+|+|||||..|+-+|..+.+.|.+ |+++++.+.. .++. ...++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~------------------------------~~~~--~~~e~-- 615 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEE------------------------------EMPA--RLEEV-- 615 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCCC--CHHHH--
Confidence 46899999999999999999999987 9999876421 0010 11222
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeE-EEEEe---------ecC------CCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLW-RVKTQ---------QGL------KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-~v~~~---------~~~------~~~~~~i~a~~vIiAtG~ 169 (443)
..+.+.|+++++++.+.++...++ +.. .|.+. ++. .++..++.||.||+|+|.
T Consensus 616 ---~~~~~~GV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~ 684 (752)
T PRK12778 616 ---KHAKEEGIEFLTLHNPIEYLADEK-GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGV 684 (752)
T ss_pred ---HHHHHcCCEEEecCcceEEEECCC-CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCC
Confidence 224566899888887877765432 221 12221 111 123367999999999994
No 368
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.11 E-value=0.0082 Score=62.67 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=64.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...+|+|||+|..|+.+|..+.+.|. +|+|+.+.... .++. ...++.
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~------------------------------~mpa--~~~ei~ 369 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTRE------------------------------EMPA--NRAEIE 369 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCCC--CHHHHH
Confidence 45689999999999999999999997 69999876421 0010 122322
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEE---EeecC------------CCcEEEEEeCEEEEccCC
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVK---TQQGL------------KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~---~~~~~------------~~~~~~i~a~~vIiAtG~ 169 (443)
+ +.+.|+++++++.+.++...+ +...++ ...+. .++...+.+|.||+|+|.
T Consensus 370 ~-----a~~eGV~i~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~ 435 (652)
T PRK12814 370 E-----ALAEGVSLRELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQ 435 (652)
T ss_pred H-----HHHcCCcEEeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCC
Confidence 2 234589998888888887654 222222 11110 123357999999999994
No 369
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.09 E-value=0.00093 Score=64.88 Aligned_cols=134 Identities=15% Similarity=0.166 Sum_probs=72.6
Q ss_pred eEEEEccCCCHHHHHHHH--hhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccc
Q 013435 204 NVLVVGCGNSGMEVSLDL--CNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQ 281 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l--~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (443)
.|+|||+|++|.-+|..| +..|.+|.++.+.+....|... .+..+.....+ .+.+ ....-..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~------tW~~~~~~~~~---~~~~-------v~~~w~~ 64 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR------TWCFWEKDLGP---LDSL-------VSHRWSG 64 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc------ccccccccccc---hHHH-------HheecCc
Confidence 389999999999999999 7778999999887743222221 11111111110 0111 0000001
Q ss_pred cCCCCCCCCCcccc-cc-CCCcccccccchhhhcCCCeEEecC-CcEEeCCc----EEEcCCcEEcccEEEEccCCCCC
Q 013435 282 FGLIRPKLGPLELK-NV-SGKTPVLDVGTLAKIRSGNIKVCRA-IKRLTHHA----AEFIDGSIENYDAIILATGYKSN 353 (443)
Q Consensus 282 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~v~v~~~-v~~~~~~~----v~~~~g~~~~~D~vi~atG~~~~ 353 (443)
..+..+........ .. .-....+.....+.+..+++.+... |+++..++ +.+.+|.++.++.||-|.|..+.
T Consensus 65 ~~v~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 65 WRVYFPDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEeCCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 11111111111000 00 1112234444555555555555554 77776654 57889999999999999997655
No 370
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0016 Score=59.71 Aligned_cols=100 Identities=19% Similarity=0.127 Sum_probs=78.4
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTYLE 115 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (443)
+-+|||||+.++.||-.|.-.|+++++.=|.-.+-| ...++.+.+.
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG----------------------------------FDqdmae~v~ 245 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG----------------------------------FDQDMAELVA 245 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc----------------------------------ccHHHHHHHH
Confidence 489999999999999999999999998877654322 1377888888
Q ss_pred HHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCC
Q 013435 116 TYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 116 ~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~ 170 (443)
...+..|+.+...+..+.++..++ +.+.|.......++..+-.||.|+.|.|..
T Consensus 246 ~~m~~~Gikf~~~~vp~~Veq~~~-g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~ 299 (503)
T KOG4716|consen 246 EHMEERGIKFLRKTVPERVEQIDD-GKLRVFYKNTNTGEEGEEEYDTVLWAIGRK 299 (503)
T ss_pred HHHHHhCCceeecccceeeeeccC-CcEEEEeecccccccccchhhhhhhhhccc
Confidence 888899999877766677776655 556676665555566788899999999953
No 371
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.04 E-value=0.00097 Score=71.58 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=32.5
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+++|+|||||+.|+.+|..|++.|.+|+++.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 45799999999999999999999999999998876
No 372
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.03 E-value=0.002 Score=65.27 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=30.7
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-.|+|||||+.|+++|..+++.|.+|.++.++.
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 369999999999999999999999999999874
No 373
>PRK07236 hypothetical protein; Provisional
Probab=97.03 E-value=0.0014 Score=64.14 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=33.1
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
...+|+|||||.+|+.+|..|++.|.+|+++.|++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 347899999999999999999999999999999873
No 374
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.00 E-value=0.0015 Score=69.27 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=33.3
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+++|+|||+|+.|+.+|..|+..|.+||++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 468999999999999999999999999999998764
No 375
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.97 E-value=0.011 Score=59.18 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=65.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...+++|||+|..|+.+|..+.+.|. +|+|+++.+... + +. ...++
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~---------------------~---------~~--~~~e~- 327 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN---------------------M---------PG--SRREV- 327 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCccc---------------------C---------CC--CHHHH-
Confidence 34689999999999999999999996 799998865210 0 00 11222
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEE---ee------cC------CCcEEEEEeCEEEEccCC
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKT---QQ------GL------KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~---~~------~~------~~~~~~i~a~~vIiAtG~ 169 (443)
..+.+.|+++++++.+.++..+++ +.+. |+. .. +. .++..++.+|.||+|+|.
T Consensus 328 ----~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~ 396 (467)
T TIGR01318 328 ----ANAREEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGF 396 (467)
T ss_pred ----HHHHhcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcC
Confidence 234567999989988888865432 2221 222 11 10 123468999999999994
No 376
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.93 E-value=0.012 Score=61.74 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=64.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
..+|+|||||..|+-+|..+.+.|. +|+++.+.+... ++.....
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~---------------------------------~~~~~~e-- 512 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN---------------------------------MPGSKKE-- 512 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC---------------------------------CCCCHHH--
Confidence 4589999999999999999999997 699988764210 0111111
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeE-EEEEe---------ecC------CCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLW-RVKTQ---------QGL------KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-~v~~~---------~~~------~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+.|+++++++.++++...++ +.. .|++. +|. .++...+.+|.||+|+|.
T Consensus 513 --~~~~~~~Gv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~ 582 (654)
T PRK12769 513 --VKNAREEGANFEFNVQPVALELNEQ-GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGF 582 (654)
T ss_pred --HHHHHHcCCeEEeccCcEEEEECCC-CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccC
Confidence 2335667999888888888865332 221 12221 111 123468999999999994
No 377
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.92 E-value=0.0016 Score=64.14 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=31.9
Q ss_pred CCCeEEEEccCCCHHHHHHHHh-hcCCccEEEEecCC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLC-NYNARPSLVVRDTV 236 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~-~~g~~Vt~i~r~~~ 236 (443)
.+++|+|||+|++|+.+|..|+ ..|.+|+++.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 5689999999999999999765 56899999999884
No 378
>PRK05868 hypothetical protein; Validated
Probab=96.89 E-value=0.0031 Score=61.27 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=31.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
++|+|||||..|+-+|..|++.|.+|+++.+++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 4799999999999999999999999999999873
No 379
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.89 E-value=0.0019 Score=63.17 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=76.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHH-HHHHHHHH----HHHhc
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLV-DQFLLLMS----WLMLG 277 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~ 277 (443)
.+|+|||||++|+-+|..|++.|.+|+++.+.+..+.+.. -...+.....+.|..-.. +.+...-. .....
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~----r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG----RGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc----eeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 5799999999999999999999999999999832222221 111222222222222211 22111000 00000
Q ss_pred Ccc--ccCCCCCCCCCccccccCCCcccccccchhhhc-CCCeEEecC--CcEEeCCc----EEEc-CCcEEcccEEEEc
Q 013435 278 DTS--QFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIR-SGNIKVCRA--IKRLTHHA----AEFI-DGSIENYDAIILA 347 (443)
Q Consensus 278 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~--v~~~~~~~----v~~~-~g~~~~~D~vi~a 347 (443)
+.. ...+....... ......-....+...+.+.+. .++++++.+ ++.+..++ ++++ +|++++||.||-|
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgA 157 (387)
T COG0654 79 DGGRRLLIFDAAELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGA 157 (387)
T ss_pred cCCceeEEecccccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEEC
Confidence 000 00000000000 000000111233444455554 466888887 66666443 6777 9999999999999
Q ss_pred cCCCCCC
Q 013435 348 TGYKSNV 354 (443)
Q Consensus 348 tG~~~~~ 354 (443)
=|.....
T Consensus 158 DG~~S~v 164 (387)
T COG0654 158 DGANSAV 164 (387)
T ss_pred CCCchHH
Confidence 9966543
No 380
>PLN02785 Protein HOTHEAD
Probab=96.89 E-value=0.0012 Score=67.70 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=32.4
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
...||+||||+|.+|+.+|.+|.+ +.+|+|+|+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 557999999999999999999999 69999999975
No 381
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.89 E-value=0.0056 Score=58.84 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
...++.+.+...+++.++.++++++|.+| ++ +.|.+.+... ...++||.||+|||..+.|
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~~~v~~~~~----~~~~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GTLRFETPDG----QSTIEADAVVLALGGASWS 143 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--CcEEEEECCC----ceEEecCEEEEcCCCcccc
Confidence 67999999999999999999999999999 23 3477776431 1469999999999975544
No 382
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.87 E-value=0.013 Score=55.41 Aligned_cols=39 Identities=36% Similarity=0.463 Sum_probs=32.9
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHc----CCCEEEEecC--CCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEK----GVPSLILERA--NCIA 70 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~----g~~v~iie~~--~~~g 70 (443)
...|||+|+||||.|.++|..|... ..++.++|.. +.++
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~ 78 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLG 78 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccc
Confidence 4589999999999999999999865 3699999998 4444
No 383
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.85 E-value=0.0024 Score=62.44 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=30.4
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
.|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 489999999999999999999999999998763
No 384
>PRK02106 choline dehydrogenase; Validated
Probab=96.81 E-value=0.0013 Score=67.65 Aligned_cols=35 Identities=37% Similarity=0.510 Sum_probs=32.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHH-cCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTE-KGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~-~g~~v~iie~~~ 67 (443)
..||+||||+|++|+.+|.+|++ .|++|+|+|+.+
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 34899999999999999999999 799999999975
No 385
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.80 E-value=0.0038 Score=58.81 Aligned_cols=101 Identities=20% Similarity=0.173 Sum_probs=72.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHc----CCCEE-EEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEK----GVPSL-ILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTK 107 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~----g~~v~-iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (443)
....|-|||+|+.|..+|+.|.+. |.+|. +|+....++ -...
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~---------------------------------kiLP 392 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME---------------------------------KILP 392 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh---------------------------------hhhH
Confidence 346799999999999999999875 33433 444332111 1123
Q ss_pred HHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 108 QQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 108 ~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.++-.....+.|+.++-+..|.++.... ....+++++| .+++.|.||+|+| ..|+.
T Consensus 393 eyls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl~lkL~dG-----~~l~tD~vVvavG--~ePN~ 451 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNLVLKLSDG-----SELRTDLVVVAVG--EEPNS 451 (659)
T ss_pred HHHHHHHHHHHHhcCceeccchhhhhhhhhc--cceEEEecCC-----CeeeeeeEEEEec--CCCch
Confidence 4444555556677899999999999888877 6777888888 8999999999999 56553
No 386
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.80 E-value=0.0028 Score=69.10 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=32.5
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+++|+|||||+.|+.+|..|++.|.+|+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 35799999999999999999999999999998876
No 387
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.78 E-value=0.014 Score=57.36 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=32.8
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.++++|||+|++|+-.|..|.+.|.+|+++.|.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 5789999999999999999999999999999998
No 388
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.77 E-value=0.0018 Score=62.81 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=31.3
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
||++|||+|++|+++|..+.+.|.+++|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 699999999999999999999999999999865
No 389
>PRK09126 hypothetical protein; Provisional
Probab=96.77 E-value=0.0026 Score=62.26 Aligned_cols=34 Identities=24% Similarity=0.533 Sum_probs=31.7
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
-+|+|||||++|+-+|..|++.|.+|+++.|.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 4699999999999999999999999999999873
No 390
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0046 Score=56.61 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=31.9
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIA 70 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g 70 (443)
-|.|||||.+|..+|++++++|.+|.++|-.+.-+
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 48999999999999999999999999999987543
No 391
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.76 E-value=0.0092 Score=65.35 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=66.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
..+|+|||+|+.|+.+|..|.+.|. .++|+|..+.+ ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------------------------------------~~---- 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------------------------------------SP---- 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-------------------------------------hH----
Confidence 4689999999999999999999995 57888875421 01
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCc
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
.+.+.+++.+++++.++.|..+..++ ..-.|+.... .+...++.+|.|+++.| ..|+
T Consensus 356 ~l~~~L~~~GV~i~~~~~v~~i~g~~--~v~~V~l~~~-~g~~~~i~~D~V~va~G--~~Pn 412 (985)
T TIGR01372 356 EARAEARELGIEVLTGHVVAATEGGK--RVSGVAVARN-GGAGQRLEADALAVSGG--WTPV 412 (985)
T ss_pred HHHHHHHHcCCEEEcCCeEEEEecCC--cEEEEEEEec-CCceEEEECCEEEEcCC--cCch
Confidence 23344567799999999998887543 2112333311 11236899999999999 4544
No 392
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.76 E-value=0.0028 Score=62.16 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=32.6
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
..+|+|||+|.+|+-+|..|++.|.+|+++.|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 46899999999999999999999999999999873
No 393
>PRK09897 hypothetical protein; Provisional
Probab=96.74 E-value=0.006 Score=61.58 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=28.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCC--ccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNA--RPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~--~Vt~i~r~~ 235 (443)
++|+|||+|++|+-+|..|.+.+. +|+++.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 479999999999999999988654 799998865
No 394
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.73 E-value=0.012 Score=49.37 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=25.6
Q ss_pred EEEccCCCHHHHHHHHhhcC-----CccEEEEecC
Q 013435 206 LVVGCGNSGMEVSLDLCNYN-----ARPSLVVRDT 235 (443)
Q Consensus 206 ~ViG~G~~~~e~a~~l~~~g-----~~Vt~i~r~~ 235 (443)
+|||+|++|+-++..|.+.. .+|+++.+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999883 4688888755
No 395
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.71 E-value=0.0038 Score=61.32 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=30.3
Q ss_pred eEEEEccCCCHHHHHHHHhhcC--CccEEEEecCC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYN--ARPSLVVRDTV 236 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g--~~Vt~i~r~~~ 236 (443)
+|+|||||.+|+-+|..|++.| .+|+++.+++.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 5899999999999999999985 89999999873
No 396
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.70 E-value=0.0047 Score=60.28 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||||..|.-+|..|++.|.+|+++.+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 369999999999999999999999999999875
No 397
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.69 E-value=0.006 Score=59.59 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=31.6
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
-+|+|||||.+|+-+|..|++.|.+|+++.|++.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3699999999999999999999999999999874
No 398
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.69 E-value=0.0022 Score=60.77 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=35.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCC--CEEEEecCCCCCccccc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGV--PSLILERANCIASLWQL 75 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~ 75 (443)
..+|+|+|||.+|+++|++|++++- .++++|+.+.+||..+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 4479999999999999999999965 56779999999984433
No 399
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.68 E-value=0.0056 Score=60.25 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 369999999999999999999999999999886
No 400
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.68 E-value=0.0023 Score=56.23 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=32.2
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+++|+|||||.+|..-+..|.+.|++||++....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 467899999999999999999999999999996543
No 401
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.68 E-value=0.0064 Score=56.12 Aligned_cols=97 Identities=20% Similarity=0.145 Sum_probs=73.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
.+.+++|+|||+.++.+|--+.-.|.++.++=|.+.+- . -..+.+.+
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-------------------------------R--~FD~~i~~ 234 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-------------------------------R--GFDEMISD 234 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-------------------------------c--chhHHHHH
Confidence 34579999999999999999999999888887766420 0 01256677
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATG 168 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG 168 (443)
.+.+..+..|++++.++.++.+....+ +...+.+..+ .....|.|+.|+|
T Consensus 235 ~v~~~~~~~ginvh~~s~~~~v~K~~~-g~~~~i~~~~-----~i~~vd~llwAiG 284 (478)
T KOG0405|consen 235 LVTEHLEGRGINVHKNSSVTKVIKTDD-GLELVITSHG-----TIEDVDTLLWAIG 284 (478)
T ss_pred HHHHHhhhcceeecccccceeeeecCC-CceEEEEecc-----ccccccEEEEEec
Confidence 777788888999999999999988775 3333444443 4555999999999
No 402
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.65 E-value=0.00047 Score=59.65 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=28.5
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
...|+|||+|++|+-+|..|++.|.+|.++.++.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~ 50 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL 50 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence 4579999999999999999999999999999876
No 403
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.64 E-value=0.0072 Score=60.10 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=32.2
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..-+|+|||||+.|.-+|..|++.|.+|.++.+++
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34589999999999999999999999999999986
No 404
>PRK06184 hypothetical protein; Provisional
Probab=96.63 E-value=0.0051 Score=62.34 Aligned_cols=34 Identities=24% Similarity=0.523 Sum_probs=31.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
-+|+|||+|++|+-+|..|++.|.+|+++.|++.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4799999999999999999999999999999873
No 405
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.62 E-value=0.0035 Score=61.14 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=31.0
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
.|+|||+|.+|+-+|..|++.|.+|+++.|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 489999999999999999999999999999983
No 406
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.023 Score=56.39 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCc-cEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNAR-PSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~-Vt~i~r~~ 235 (443)
..+|+|||+|.+|+-+|..|.+.|.. +.++.+++
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 45799999999999999999999977 99999886
No 407
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.61 E-value=0.002 Score=59.39 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=34.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
.+.+|+|||+|.+|++||+.|. .-.+|+++|....+||.-
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls-~rhdVTLfEA~~rlGGha 46 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLS-RRHDVTLFEADRRLGGHA 46 (447)
T ss_pred CCcceEEEcccchhhhhHHhhh-cccceEEEeccccccCcc
Confidence 4557999999999999999776 457999999999999853
No 408
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.60 E-value=0.004 Score=62.77 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=32.0
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+++|+|||+|.+|+++|..|++.|.+|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 56799999999999999999999999999997765
No 409
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.59 E-value=0.0021 Score=63.62 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=31.2
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-.|+|||+|++|.-+|..|++.|.+|.++.|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 479999999999999999999999999999987
No 410
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.57 E-value=0.00057 Score=58.30 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=36.5
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCc-cccc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIAS-LWQL 75 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg-~w~~ 75 (443)
....||+|+|+|.+|+++|+.+.+. .+++.|||..-.+|| .|..
T Consensus 74 yAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLG 120 (328)
T KOG2960|consen 74 YAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLG 120 (328)
T ss_pred hhccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccccc
Confidence 3456999999999999999999966 589999999776654 6654
No 411
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.56 E-value=0.0034 Score=62.15 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=26.6
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.|+|||||..|+-+|..+++.|.+|.|+.+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 48999999999999999999999999999887
No 412
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.54 E-value=0.0048 Score=60.51 Aligned_cols=31 Identities=13% Similarity=0.341 Sum_probs=28.9
Q ss_pred EEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 206 LVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 206 ~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
+|||+|.+|+-+|..+++.|.+|+++.+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc
Confidence 5999999999999999999999999999873
No 413
>PRK08244 hypothetical protein; Provisional
Probab=96.49 E-value=0.0073 Score=61.09 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=31.7
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
..|+|||+|++|+-+|..|++.|.+|+++.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3699999999999999999999999999999874
No 414
>PRK07588 hypothetical protein; Provisional
Probab=96.49 E-value=0.0055 Score=59.95 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=31.1
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
+|+|||||.+|+-+|..|++.|.+|+++.|.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 699999999999999999999999999999873
No 415
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.46 E-value=0.0096 Score=58.57 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEec
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRD 234 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~ 234 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47999999999999999999999999999986
No 416
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.46 E-value=0.0089 Score=60.65 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=29.9
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.|+|||+|..|+++|..++..|.+|.++.+..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 58999999999999999999999999999875
No 417
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.45 E-value=0.0046 Score=54.58 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=31.0
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEe
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVR 233 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r 233 (443)
..+++|+|||||.+|..=+..|.+.|++||++..
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 4578999999999999999999999999999953
No 418
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.45 E-value=0.0028 Score=62.07 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=31.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
-.|+|||+|++|.-+|..|++.|.+|.++.++..
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence 3699999999999999999999999999999884
No 419
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.44 E-value=0.0043 Score=60.45 Aligned_cols=32 Identities=25% Similarity=0.540 Sum_probs=30.5
Q ss_pred eEEEEccCCCHHHHHHHHhhcC-CccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYN-ARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g-~~Vt~i~r~~ 235 (443)
.|+|||+|++|+-+|..|++.| .+|+++.|.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 4899999999999999999999 9999999987
No 420
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.41 E-value=0.0039 Score=65.59 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=35.3
Q ss_pred CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 198 ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 198 ~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
....+++|+|||+|+.|+-+|..|.+.|..|++..|++
T Consensus 1781 ~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 34568999999999999999999999999999999998
No 421
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.39 E-value=0.054 Score=54.52 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=30.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGV-PSLILERANC 68 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~ 68 (443)
...+|+|||||..|+.+|..+.+.+. +|++++..+.
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 34689999999999999999998875 7999987653
No 422
>PRK08013 oxidoreductase; Provisional
Probab=96.38 E-value=0.0056 Score=60.09 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
.+|+|||+|++|+-+|..|++.|.+|+++.+++.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4799999999999999999999999999999884
No 423
>PRK06753 hypothetical protein; Provisional
Probab=96.37 E-value=0.0071 Score=58.73 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=31.3
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
+|+|||||.+|+-+|..|++.|.+|+++.|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 699999999999999999999999999999983
No 424
>PRK07045 putative monooxygenase; Reviewed
Probab=96.34 E-value=0.011 Score=57.69 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=32.0
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
-+|+|||||++|+-+|..|++.|.+|+++.|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4799999999999999999999999999999984
No 425
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.34 E-value=0.005 Score=59.87 Aligned_cols=32 Identities=25% Similarity=0.583 Sum_probs=30.2
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 59999999999999999999999999999875
No 426
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.33 E-value=0.053 Score=56.63 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=64.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...+|+|||+|..|+-+|..+.+.|. +|+++.+.+... ++. ...++.
T Consensus 450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~------------------------------~~~--~~~e~~ 497 (639)
T PRK12809 450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS------------------------------MPG--SRKEVV 497 (639)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc------------------------------CCC--CHHHHH
Confidence 34689999999999999999999995 799998764220 000 122222
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEE-EE---Eee------cC------CCcEEEEEeCEEEEccCC
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VK---TQQ------GL------KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~---~~~------~~------~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.|+++++++.+.++..+++ +.+. |. ... |. .+.+..+.+|.||+|+|.
T Consensus 498 -----~a~~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~ 565 (639)
T PRK12809 498 -----NAREEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGF 565 (639)
T ss_pred -----HHHHcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCC
Confidence 24566999988888888865432 2221 21 111 10 123468999999999994
No 427
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.32 E-value=0.0065 Score=59.58 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=30.5
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
+|+|||+|+.|.-+|..|++.|.+|.++.|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999976
No 428
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.31 E-value=0.019 Score=56.67 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=32.0
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
.+|+|||||..|+-+|..|++.|.+|+++.|++.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 5799999999999999999999999999999883
No 429
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.29 E-value=0.011 Score=57.29 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=28.5
Q ss_pred CeEEEEccCCCHHHHHHHHhhcC---CccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYN---ARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g---~~Vt~i~r~~~ 236 (443)
.+|+|||+|.+|+.+|..|.+.- ..|+++..++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 47999999999999999999862 23888887774
No 430
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.29 E-value=0.0037 Score=63.63 Aligned_cols=37 Identities=38% Similarity=0.502 Sum_probs=33.9
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
....||+||||+|.+|..+|..|...|++|+|+|+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 3567999999999999999999998899999999974
No 431
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.27 E-value=0.012 Score=57.48 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-+|+|||||..|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 479999999999999999999999999999876
No 432
>PRK07190 hypothetical protein; Provisional
Probab=96.27 E-value=0.0084 Score=60.31 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=31.7
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
..|+|||+|++|+-+|..|++.|.+|.++.+.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 4799999999999999999999999999999874
No 433
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.26 E-value=0.007 Score=56.46 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=30.5
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999987
No 434
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.24 E-value=0.0095 Score=58.24 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=29.8
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEec
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRD 234 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~ 234 (443)
+|+|||+|++|.-+|..|++.|.+|.++.++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5999999999999999999999999999997
No 435
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.23 E-value=0.0079 Score=61.06 Aligned_cols=95 Identities=17% Similarity=0.265 Sum_probs=69.5
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTYLE 115 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (443)
.-+|||||.-|+.+|..|...|.++.++.-.+.+-- + .....-...|+
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMe--r------------------------------QLD~~ag~lL~ 194 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME--R------------------------------QLDRTAGRLLR 194 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecchHHH--H------------------------------hhhhHHHHHHH
Confidence 379999999999999999999999999976542200 0 00122334566
Q ss_pred HHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 116 TYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 116 ~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
...++.|++++++...+.+.... ..-.+..+++ ..+.||.||.|+|.
T Consensus 195 ~~le~~Gi~~~l~~~t~ei~g~~--~~~~vr~~DG-----~~i~ad~VV~a~GI 241 (793)
T COG1251 195 RKLEDLGIKVLLEKNTEEIVGED--KVEGVRFADG-----TEIPADLVVMAVGI 241 (793)
T ss_pred HHHHhhcceeecccchhhhhcCc--ceeeEeecCC-----CcccceeEEEeccc
Confidence 77778899988887777666533 3344777776 88999999999994
No 436
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.22 E-value=0.0041 Score=63.47 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=30.2
Q ss_pred CeEEECCCHHHHHHHHHHHHcC-CCEEEEecCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKG-VPSLILERAN 67 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~ 67 (443)
|+||||+|.+|+.+|.+|++.+ ++|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999975
No 437
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.19 E-value=0.0087 Score=52.46 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=31.4
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEe
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVR 233 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r 233 (443)
..+++|+|||||..|...+..|.+.|++|+++.+
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 5689999999999999999999999999999964
No 438
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.17 E-value=0.012 Score=57.79 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=29.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-.|+|||||..|+|+|...++.|.++.++.-..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 369999999999999999999999998887655
No 439
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.057 Score=50.53 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=68.5
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
-+..+|+|||||-+++.-|..|.+.+.+|+++-|.+.+- ..+.+.
T Consensus 141 ~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a~~~~~ 185 (305)
T COG0492 141 FKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------AEEILV 185 (305)
T ss_pred ccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------cCHHHH
Confidence 345689999999999999999999999999998877431 112222
Q ss_pred HHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 112 TYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 112 ~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+ .+.+. ++.+++++.+.++.-++ -.. |+..+.. ++...+.++.++++.|.
T Consensus 186 ~----~l~~~~~i~~~~~~~i~ei~G~~-v~~--v~l~~~~-~~~~~~~~~gvf~~iG~ 236 (305)
T COG0492 186 E----RLKKNVKIEVLTNTVVKEILGDD-VEG--VVLKNVK-GEEKELPVDGVFIAIGH 236 (305)
T ss_pred H----HHHhcCCeEEEeCCceeEEecCc-cce--EEEEecC-CceEEEEeceEEEecCC
Confidence 2 22322 67888899898887653 123 4444432 35579999999999994
No 440
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.09 E-value=0.015 Score=58.06 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=32.4
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
....+|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 356789999999999999999999999999998854
No 441
>PLN02697 lycopene epsilon cyclase
Probab=96.08 E-value=0.011 Score=59.60 Aligned_cols=32 Identities=22% Similarity=0.561 Sum_probs=29.4
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEec
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRD 234 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~ 234 (443)
-.|+|||+|+.|+-+|..|++.|.+|.++.+.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 47999999999999999999999999999764
No 442
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.03 E-value=0.0052 Score=58.67 Aligned_cols=40 Identities=33% Similarity=0.478 Sum_probs=37.0
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS 71 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg 71 (443)
.+-||++|||+|.-|+.+|..|++.|.+|+++|++...||
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 6689999999999999999999999999999999976665
No 443
>PRK10015 oxidoreductase; Provisional
Probab=96.03 E-value=0.0063 Score=60.25 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=31.5
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
-.|+|||+|++|.-+|..|++.|.+|.++.|.+.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3799999999999999999999999999999873
No 444
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.01 E-value=0.01 Score=57.26 Aligned_cols=34 Identities=32% Similarity=0.590 Sum_probs=32.6
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.++++|||||.+|+++|.+|++.|.+|+++.+.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5789999999999999999999999999999988
No 445
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.97 E-value=0.053 Score=53.23 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=68.3
Q ss_pred cCCCeEEECCCHHHHHHH-HHHH----HcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCH
Q 013435 33 MVPGPVIVGAGPSGLATA-ACLT----EKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTK 107 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A-~~l~----~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (443)
...| +|++.|..|+..+ ..+. +.|.++++++..+.. .+.
T Consensus 215 ~~~~-~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG 258 (422)
T PRK05329 215 GDAE-AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPG 258 (422)
T ss_pred CCCC-EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------Cch
Confidence 3334 6688888898887 4343 359999999876521 123
Q ss_pred HHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 108 QQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 108 ~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.++.+.+.+.+++.|+.++.++.|.+++..+ +...+.... .++...+++|.||+|+|.
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~--~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTR--NHGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEee--CCceEEEECCEEEEeCCC
Confidence 4677778888888899999999999998776 443332221 123368999999999994
No 446
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.91 E-value=0.036 Score=56.23 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=28.2
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
|+|+|||+|.+|+-.+..|.+.|.+++++.+++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 799999999999999999999999999999988
No 447
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.83 E-value=0.016 Score=59.39 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=32.3
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 35799999999999999999999999999999873
No 448
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.82 E-value=0.086 Score=50.11 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=39.4
Q ss_pred CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCC
Q 013435 122 GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 122 ~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~ 170 (443)
.+.+...++|..++..++ +.+.+.+.....++..++++|.||+|||..
T Consensus 292 ~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGD-GRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CeeeccccceeeeecCCC-ceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 345677899999998875 558888887767777899999999999963
No 449
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.79 E-value=0.0073 Score=60.10 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=27.1
Q ss_pred eEEEEccCCCHHHHHHHHhhcC---CccEEEEecCC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYN---ARPSLVVRDTV 236 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g---~~Vt~i~r~~~ 236 (443)
+|+|||||..|.-+|..|++.+ .+|+++.+...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 5899999999999999999998 67999988873
No 450
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.73 E-value=0.02 Score=56.50 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=30.5
Q ss_pred eEEEEccCCCHHHHHHHHhhcC-CccEEEEecCC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYN-ARPSLVVRDTV 236 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g-~~Vt~i~r~~~ 236 (443)
+|+|||||..|+-+|..|++.| .+|+++.|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 6999999999999999999998 59999999873
No 451
>PRK13984 putative oxidoreductase; Provisional
Probab=95.71 E-value=0.11 Score=54.07 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=25.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCC------CEEEEe
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGV------PSLILE 64 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~------~v~iie 64 (443)
..+|+|||||..|+-+|..|.+.+. +++++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4689999999999999999998753 566653
No 452
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.71 E-value=0.029 Score=54.84 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=31.2
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 469999999999999999999999999999987
No 453
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.022 Score=54.91 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=29.7
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-.|+|||||..|+|.|...++.|++.+++..+-
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 479999999999999999999999998887654
No 454
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.64 E-value=0.0086 Score=42.25 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=27.5
Q ss_pred EEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 207 VVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 207 ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
|||+|.+|+-+|..|++.+.+|+++.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999999883
No 455
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.63 E-value=0.008 Score=46.45 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=31.6
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.++++|+|||||..|..-+..|.+.|++||++....
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 468999999999999999999999999999997663
No 456
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.55 E-value=0.022 Score=55.77 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=29.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhc---CCccEEEEec
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNY---NARPSLVVRD 234 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~---g~~Vt~i~r~ 234 (443)
-+|+|||+|..|+-+|..|++. |.+|+++.|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4699999999999999999998 9999999995
No 457
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.48 E-value=0.029 Score=55.80 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=29.6
Q ss_pred eEEEEccCCCHHHHHHHHhh----cCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCN----YNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~----~g~~Vt~i~r~~ 235 (443)
.|+|||||.+|+-+|..|++ .|.+|+++.+++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 58999999999999999998 799999999954
No 458
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.45 E-value=0.13 Score=52.96 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=63.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcC-CCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKG-VPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...+|+|||+|..|+.+|..+.+.+ .+++|+.+.+.. .++ ....++.
T Consensus 266 ~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~------------------------------~~~--~~~~~~~ 313 (564)
T PRK12771 266 LGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTRE------------------------------DMP--AHDEEIE 313 (564)
T ss_pred CCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcc------------------------------cCC--CCHHHHH
Confidence 3568999999999999999899888 578888776421 000 0112221
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEE---Ee------ecC----CCcEEEEEeCEEEEccCC
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVK---TQ------QGL----KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~---~~------~~~----~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.++++++++.+.++...++ +...++ .. ++. .++..++.+|.||+|+|.
T Consensus 314 -----~a~~~GVki~~~~~~~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~ 378 (564)
T PRK12771 314 -----EALREGVEINWLRTPVEIEGDEN-GATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQ 378 (564)
T ss_pred -----HHHHcCCEEEecCCcEEEEcCCC-CEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCC
Confidence 23456889888888888865442 221121 11 111 234468999999999994
No 459
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.40 E-value=0.024 Score=56.62 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=31.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
..+++|+|+|..|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999998864
No 460
>PRK06126 hypothetical protein; Provisional
Probab=95.40 E-value=0.053 Score=55.61 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=32.0
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+|+|||+|.+|+-+|..|++.|.+|+++.|++
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3579999999999999999999999999999987
No 461
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.39 E-value=0.044 Score=48.78 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=26.2
Q ss_pred EEEEccCCCHHHHHHHHhhcC--CccEEEEecC
Q 013435 205 VLVVGCGNSGMEVSLDLCNYN--ARPSLVVRDT 235 (443)
Q Consensus 205 v~ViG~G~~~~e~a~~l~~~g--~~Vt~i~r~~ 235 (443)
.+|||||..|+-||..|+.+- ++|.++..++
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 689999999999999999874 5677776665
No 462
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.29 E-value=0.081 Score=53.05 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=30.5
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999998865
No 463
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.25 E-value=0.039 Score=53.76 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCc
Q 013435 104 YPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
......+...+.+.+.+ |+++++++.|.+++.++ +.|.|++.++ ..++||.||+|+|.++...
T Consensus 131 ~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~~v~t~~g-----~~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG--EGWQLLDANG-----EVIAASVVVLANGAQAGQL 193 (381)
T ss_pred ccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeEEEEeCCC-----CEEEcCEEEEcCCcccccc
Confidence 44567777777777777 88999999999998866 6688887764 4689999999999876543
No 464
>PRK11445 putative oxidoreductase; Provisional
Probab=95.24 E-value=0.029 Score=54.05 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=29.9
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
+|+|||+|++|.-+|..|++. .+|+++.|++.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 699999999999999999999 99999999873
No 465
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.21 E-value=0.038 Score=56.69 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=31.9
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+|+|||+|++|+-+|..|++.|.+|+++.+++
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3579999999999999999999999999999987
No 466
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.19 E-value=0.14 Score=48.73 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCCCCCCc
Q 013435 103 TYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
++.....+...+.+.+.+.|++++.+++|++++..+ +.+ .|.+.+ .+++||.||+|+|+++...
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~------g~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPS------GDVQADQVVLAAGAWAGEL 196 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCC------CEEECCEEEEcCChhhhhc
Confidence 345678888888888888999999999999999765 443 455544 4799999999999876543
No 467
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.13 E-value=0.016 Score=57.22 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=33.3
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+++|+|||+|+.|+.+|..|+..|..||++.|.+
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 356899999999999999999999999999998877
No 468
>PRK06996 hypothetical protein; Provisional
Probab=95.08 E-value=0.019 Score=56.27 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=29.6
Q ss_pred CeEEEEccCCCHHHHHHHHhhcC----CccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYN----ARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g----~~Vt~i~r~~ 235 (443)
.+|+|||||++|+-+|..|++.| .+|+++.+.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 47999999999999999999986 4699999876
No 469
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.03 E-value=0.023 Score=57.09 Aligned_cols=40 Identities=28% Similarity=0.276 Sum_probs=35.3
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCC
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEK-GVPSLILERANCI 69 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~-g~~v~iie~~~~~ 69 (443)
.....||.||||||.||+.+|.+|.+. ..+|+++|+....
T Consensus 53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 467889999999999999999999998 5799999996643
No 470
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.03 E-value=0.02 Score=55.57 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=31.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
++|+|||||.+|+++|..|++.|.+|+++.+++.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 5799999999999999999999999999998774
No 471
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=94.93 E-value=0.036 Score=52.68 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||||.+|+-.|..|.+.|-+|.++.++.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 579999999999999999999999999998865
No 472
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.92 E-value=0.024 Score=47.53 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=29.6
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+|.|||||..|.++|..|++.|.+|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 38999999999999999999999999998764
No 473
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=94.91 E-value=0.085 Score=54.62 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=33.1
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+..+|+|||||..|+-+|..|++.|.+|+++.|.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 355789999999999999999999999999999976
No 474
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.88 E-value=0.034 Score=49.68 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=30.6
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+++|||+|..|.++|..|.+.|.+++++|+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 68999999999999999999999999999976
No 475
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.79 E-value=0.074 Score=48.78 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=26.3
Q ss_pred cEEEcCCcEEcccEEEEccCCCCCCCCCccCc
Q 013435 330 AAEFIDGSIENYDAIILATGYKSNVPYWLKDT 361 (443)
Q Consensus 330 ~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~ 361 (443)
.|.+.+|++|..|.+|.|+|..-+. +.+.+.
T Consensus 123 ~v~t~gg~eIsYdylviA~Giql~y-~~IkGl 153 (446)
T KOG3851|consen 123 TVVTRGGEEISYDYLVIAMGIQLDY-GKIKGL 153 (446)
T ss_pred eEEccCCcEEeeeeEeeeeeceecc-chhcCh
Confidence 4888999999999999999999987 455554
No 476
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=94.77 E-value=0.024 Score=55.37 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=31.0
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
+|+|||||.+|+++|..|++.|.+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999998774
No 477
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.69 E-value=0.065 Score=52.22 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=31.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcC--CccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYN--ARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g--~~Vt~i~r~~~ 236 (443)
-.|+|||||.+|+-+|..|.++. .+|.++.|.+.
T Consensus 4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~ 39 (429)
T COG0579 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDG 39 (429)
T ss_pred eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence 47999999999999999999998 88999998874
No 478
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.65 E-value=0.043 Score=47.15 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=27.7
Q ss_pred eEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 37 PVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 37 vvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
|.|||+|..|...|..++..|++|+++|.++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 8899999999999999999999999999875
No 479
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.63 E-value=0.04 Score=48.42 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=32.1
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEec
Q 013435 199 LFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRD 234 (443)
Q Consensus 199 ~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~ 234 (443)
...+++|+|||||..|..=+..|...|++|+++...
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 356889999999999999999999999999998543
No 480
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.62 E-value=0.046 Score=53.56 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=35.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK 76 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~ 76 (443)
..|||||+|.|..-..+|..|++.|.+|+-+|+++.-||.|...
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl 46 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASL 46 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcc
Confidence 46899999999999999999999999999999999999988763
No 481
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.49 E-value=0.14 Score=51.63 Aligned_cols=31 Identities=23% Similarity=0.525 Sum_probs=28.8
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.|+|||+|..|+-+|..+++.|. |.++.+.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence 69999999999999999999997 99998876
No 482
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.40 E-value=0.05 Score=54.22 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.3
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEE
Q 013435 199 LFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVV 232 (443)
Q Consensus 199 ~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~ 232 (443)
+..+++|+|||||..|..=+..|.+.|++||++.
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~vis 42 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNA 42 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence 3568999999999999999999999999999985
No 483
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.30 E-value=0.042 Score=46.04 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEE
Q 013435 199 LFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVV 232 (443)
Q Consensus 199 ~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~ 232 (443)
+..+++|+|||||..|...+..|.+.|++|+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4568999999999999999999999999999993
No 484
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.16 E-value=0.035 Score=42.85 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=31.2
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
...+|+|||||..|..-+..|.+.|.+++++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45579999999999999999999999999999873
No 485
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.00 E-value=0.2 Score=47.20 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhhc--CCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNY--NARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~--g~~Vt~i~r~~~ 236 (443)
.+|+|||+|+.|+=.|..|++. +.+|+++.+.|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv 56 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV 56 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc
Confidence 4899999999999999999984 588999998884
No 486
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.97 E-value=0.083 Score=44.25 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=30.2
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERA 66 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~ 66 (443)
...+|+|||||..|..-+..|.+.|.+|+|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4456999999999999999999999999999643
No 487
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.96 E-value=0.067 Score=50.42 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=30.8
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||+|..|.++|..|+++|++|+++|+.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 369999999999999999999999999999875
No 488
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.88 E-value=0.066 Score=53.69 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=33.1
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+.++|+|||+|.+|+-+|+.|.+.|.+|+++.-++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 456799999999999999999999999999998777
No 489
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.88 E-value=0.096 Score=46.01 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=30.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
..+|+|||||..|..-+..|.+.|.+|+|+++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3479999999999999999999999999998754
No 490
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.79 E-value=0.066 Score=53.64 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=30.7
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANC 68 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~ 68 (443)
+|+|||.|++|+++|+.|.+.|++|+++|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 489999999999999999999999999998764
No 491
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=93.79 E-value=0.081 Score=56.44 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=30.1
Q ss_pred eEEEEccCCCHHHHHHHHhhc--CCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNY--NARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~--g~~Vt~i~r~~ 235 (443)
+|+|||||..|+=+|..|++. |.+|+++.+.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 699999999999999999998 78999999887
No 492
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.68 E-value=0.089 Score=52.54 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=32.2
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+++++|+|+|.+|+.+|..|++.|.+|+++.+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999999999999999999999999997764
No 493
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.64 E-value=0.075 Score=49.45 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=31.1
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||+|..|...|..+++.|++|+++|..+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 469999999999999999999999999999876
No 494
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=93.62 E-value=0.18 Score=52.58 Aligned_cols=35 Identities=29% Similarity=0.669 Sum_probs=31.9
Q ss_pred CCeEEEEccCCCHHHHHHHHhhc-CCccEEEEecCC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNY-NARPSLVVRDTV 236 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~-g~~Vt~i~r~~~ 236 (443)
.-+|+|||+|++|+-+|..|++. |.+|+++.+++.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 35799999999999999999995 999999999874
No 495
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.61 E-value=0.11 Score=45.63 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=31.0
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERA 66 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~ 66 (443)
....+|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 34557999999999999999999999999999764
No 496
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.51 E-value=0.32 Score=49.52 Aligned_cols=67 Identities=19% Similarity=0.029 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.....+...+...+.+.|+.+..+++|+++...++ ..+.|++.+...++...+.|+.||+|+|.|+.
T Consensus 125 vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 125 VDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGG-RVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred ECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECC-EEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 35566677777788888999999999999998662 23345554433334468999999999998764
No 497
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.43 E-value=0.12 Score=42.97 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=29.0
Q ss_pred eEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 37 PVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 37 vvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
|+|+|+|..|...|..|.+.|.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998863
No 498
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=93.43 E-value=0.069 Score=52.59 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=31.2
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
++|+|||+|.+|+-+|..|++.|.+|+++.|++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999986
No 499
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.39 E-value=0.097 Score=48.81 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=30.6
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||+|..|..+|..|++.|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 359999999999999999999999999999875
No 500
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.37 E-value=0.093 Score=49.45 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=31.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
...|.|||+|..|...|..++..|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3569999999999999999999999999999875
Done!