Query 013435
Match_columns 443
No_of_seqs 179 out of 2346
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 10:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9w_A Monooxygenase; baeyer-v 100.0 5.4E-41 1.8E-45 322.8 28.1 342 34-415 3-353 (357)
2 2xve_A Flavin-containing monoo 100.0 4.4E-40 1.5E-44 326.5 30.7 306 35-413 3-340 (464)
3 3gwf_A Cyclohexanone monooxyge 100.0 2E-39 6.9E-44 326.3 25.1 363 33-411 7-454 (540)
4 4ap3_A Steroid monooxygenase; 100.0 3.6E-38 1.2E-42 317.8 27.8 366 32-411 19-468 (549)
5 3uox_A Otemo; baeyer-villiger 100.0 2.3E-38 8E-43 318.9 25.5 366 32-411 7-463 (545)
6 2gv8_A Monooxygenase; FMO, FAD 100.0 4.8E-37 1.7E-41 304.1 26.0 301 33-413 5-361 (447)
7 1w4x_A Phenylacetone monooxyge 100.0 4.4E-37 1.5E-41 311.0 25.8 366 34-413 16-465 (542)
8 2zbw_A Thioredoxin reductase; 100.0 7E-37 2.4E-41 291.8 18.0 311 34-430 5-333 (335)
9 3lzw_A Ferredoxin--NADP reduct 100.0 6.4E-37 2.2E-41 291.4 15.9 294 33-416 6-317 (332)
10 3itj_A Thioredoxin reductase 1 100.0 8.2E-37 2.8E-41 291.5 15.6 297 29-415 17-336 (338)
11 3f8d_A Thioredoxin reductase ( 100.0 2.2E-36 7.5E-41 286.5 18.3 288 33-416 14-319 (323)
12 3fbs_A Oxidoreductase; structu 100.0 9.2E-36 3.2E-40 278.9 20.2 284 33-415 1-293 (297)
13 2q0l_A TRXR, thioredoxin reduc 100.0 1.1E-35 3.7E-40 280.5 19.8 287 34-414 1-309 (311)
14 2q7v_A Thioredoxin reductase; 100.0 2.9E-35 1E-39 279.3 22.6 289 33-415 7-313 (325)
15 3ab1_A Ferredoxin--NADP reduct 100.0 1.6E-35 5.5E-40 285.2 21.0 299 33-416 13-330 (360)
16 3cty_A Thioredoxin reductase; 100.0 1.7E-35 5.7E-40 280.3 18.8 287 32-414 14-316 (319)
17 3r9u_A Thioredoxin reductase; 100.0 4.4E-35 1.5E-39 276.6 19.8 291 33-415 3-313 (315)
18 4gcm_A TRXR, thioredoxin reduc 100.0 5.7E-35 2E-39 275.7 20.0 288 33-416 5-308 (312)
19 4fk1_A Putative thioredoxin re 100.0 2.6E-35 9E-40 276.9 17.2 287 33-416 5-302 (304)
20 2a87_A TRXR, TR, thioredoxin r 100.0 3.2E-35 1.1E-39 280.2 18.0 290 32-416 12-318 (335)
21 4a5l_A Thioredoxin reductase; 100.0 1.4E-35 4.9E-40 280.1 14.6 293 33-415 3-313 (314)
22 1fl2_A Alkyl hydroperoxide red 100.0 7.7E-35 2.6E-39 274.6 18.6 287 35-415 2-306 (310)
23 1vdc_A NTR, NADPH dependent th 100.0 4.5E-34 1.6E-38 272.0 20.3 290 34-416 8-325 (333)
24 1trb_A Thioredoxin reductase; 100.0 3E-34 1E-38 271.7 16.5 290 34-415 5-315 (320)
25 3d1c_A Flavin-containing putat 100.0 1.6E-33 5.3E-38 272.2 21.1 309 34-414 4-339 (369)
26 1hyu_A AHPF, alkyl hydroperoxi 100.0 4.3E-33 1.5E-37 280.1 23.6 291 31-415 209-517 (521)
27 4eqs_A Coenzyme A disulfide re 100.0 2E-35 6.8E-40 290.8 6.1 293 35-413 1-312 (437)
28 4b63_A L-ornithine N5 monooxyg 100.0 1.5E-32 5E-37 274.7 24.4 375 7-392 1-458 (501)
29 3ics_A Coenzyme A-disulfide re 100.0 4.5E-34 1.5E-38 292.4 8.6 295 30-411 32-352 (588)
30 3oc4_A Oxidoreductase, pyridin 100.0 1.9E-32 6.3E-37 271.5 17.7 286 35-412 3-314 (452)
31 3l8k_A Dihydrolipoyl dehydroge 100.0 3.4E-33 1.2E-37 277.7 11.8 295 34-412 4-333 (466)
32 2wpf_A Trypanothione reductase 100.0 3.6E-33 1.2E-37 279.1 11.7 306 33-412 6-355 (495)
33 3klj_A NAD(FAD)-dependent dehy 100.0 1.3E-34 4.6E-39 279.9 1.3 277 30-413 5-295 (385)
34 3urh_A Dihydrolipoyl dehydroge 100.0 2.5E-33 8.4E-38 280.7 10.3 307 33-412 24-363 (491)
35 1onf_A GR, grase, glutathione 100.0 5.6E-33 1.9E-37 278.4 12.7 301 34-411 2-370 (500)
36 1zmd_A Dihydrolipoyl dehydroge 100.0 6.3E-33 2.1E-37 276.6 12.9 307 32-412 4-345 (474)
37 3iwa_A FAD-dependent pyridine 100.0 1.8E-33 6.1E-38 280.4 8.4 298 34-412 3-329 (472)
38 3kd9_A Coenzyme A disulfide re 100.0 1.8E-33 6.3E-38 278.5 8.1 285 34-412 3-315 (449)
39 2bc0_A NADH oxidase; flavoprot 100.0 3.1E-33 1.1E-37 279.6 9.6 290 33-412 34-361 (490)
40 3ntd_A FAD-dependent pyridine 100.0 7.6E-34 2.6E-38 289.7 5.2 291 34-412 1-338 (565)
41 3qfa_A Thioredoxin reductase 1 100.0 2.6E-33 8.9E-38 281.7 8.8 332 30-436 28-404 (519)
42 1xdi_A RV3303C-LPDA; reductase 100.0 8.6E-33 2.9E-37 277.2 12.2 307 34-412 2-342 (499)
43 1ges_A Glutathione reductase; 100.0 8.1E-33 2.8E-37 273.7 11.2 297 34-412 4-328 (450)
44 1dxl_A Dihydrolipoamide dehydr 100.0 1.8E-32 6E-37 273.3 13.6 307 33-412 5-342 (470)
45 3dk9_A Grase, GR, glutathione 100.0 4.9E-33 1.7E-37 277.7 9.5 301 32-412 18-356 (478)
46 1ojt_A Surface protein; redox- 100.0 3.9E-32 1.3E-36 271.3 15.8 303 34-411 6-348 (482)
47 2hqm_A GR, grase, glutathione 100.0 7.2E-33 2.5E-37 276.2 10.4 303 33-412 10-347 (479)
48 2qae_A Lipoamide, dihydrolipoy 100.0 1.4E-32 4.7E-37 273.7 12.2 301 34-412 2-340 (468)
49 1mo9_A ORF3; nucleotide bindin 100.0 7.3E-32 2.5E-36 271.6 17.3 303 32-411 41-377 (523)
50 1fec_A Trypanothione reductase 100.0 2.4E-32 8.1E-37 273.0 13.6 308 33-412 2-351 (490)
51 2vdc_G Glutamate synthase [NAD 100.0 6.5E-33 2.2E-37 273.3 9.3 295 31-415 119-445 (456)
52 1ebd_A E3BD, dihydrolipoamide 100.0 3.4E-32 1.2E-36 269.9 14.5 300 34-412 3-333 (455)
53 2r9z_A Glutathione amide reduc 100.0 2.8E-32 9.5E-37 270.7 12.4 298 33-412 3-327 (463)
54 4dna_A Probable glutathione re 100.0 1E-32 3.5E-37 274.2 9.2 297 34-412 5-331 (463)
55 1xhc_A NADH oxidase /nitrite r 100.0 2E-33 6.7E-38 270.4 3.6 278 32-412 6-297 (367)
56 2a8x_A Dihydrolipoyl dehydroge 100.0 2.3E-32 7.9E-37 271.8 11.2 300 35-411 4-333 (464)
57 3o0h_A Glutathione reductase; 100.0 3.1E-32 1.1E-36 272.1 12.2 321 34-435 26-374 (484)
58 3lxd_A FAD-dependent pyridine 100.0 7.6E-33 2.6E-37 271.4 7.0 285 32-412 7-321 (415)
59 3s5w_A L-ornithine 5-monooxyge 100.0 1.9E-30 6.4E-35 258.3 23.5 332 33-393 29-420 (463)
60 3ef6_A Toluene 1,2-dioxygenase 100.0 5E-33 1.7E-37 272.0 4.5 283 34-412 2-309 (410)
61 2cdu_A NADPH oxidase; flavoenz 100.0 9.4E-33 3.2E-37 273.7 5.9 291 35-412 1-317 (452)
62 3dgz_A Thioredoxin reductase 2 100.0 1.4E-32 4.7E-37 275.0 7.1 307 32-413 4-353 (488)
63 1v59_A Dihydrolipoamide dehydr 100.0 1.3E-31 4.6E-36 267.4 13.9 304 34-411 5-349 (478)
64 3lad_A Dihydrolipoamide dehydr 100.0 1.1E-30 3.6E-35 260.7 19.3 306 33-412 2-343 (476)
65 3cgb_A Pyridine nucleotide-dis 100.0 3.5E-32 1.2E-36 271.3 8.4 291 33-412 35-353 (480)
66 3ic9_A Dihydrolipoamide dehydr 100.0 6.8E-33 2.3E-37 277.1 2.8 304 34-412 8-338 (492)
67 3dgh_A TRXR-1, thioredoxin red 100.0 4.1E-32 1.4E-36 271.3 8.3 304 32-412 7-352 (483)
68 2eq6_A Pyruvate dehydrogenase 100.0 3.4E-31 1.2E-35 263.1 14.7 296 34-411 6-333 (464)
69 1zk7_A HGII, reductase, mercur 100.0 2.5E-31 8.5E-36 264.6 13.7 303 33-412 3-334 (467)
70 2gqw_A Ferredoxin reductase; f 100.0 1.5E-31 5.1E-36 261.2 11.5 280 33-412 6-308 (408)
71 4b1b_A TRXR, thioredoxin reduc 100.0 2.5E-31 8.5E-36 266.1 12.5 335 30-437 38-409 (542)
72 2yqu_A 2-oxoglutarate dehydrog 100.0 3.8E-31 1.3E-35 262.4 13.7 300 35-412 2-327 (455)
73 1nhp_A NADH peroxidase; oxidor 100.0 8.6E-32 3E-36 266.4 8.8 287 35-411 1-315 (447)
74 2v3a_A Rubredoxin reductase; a 100.0 3.4E-31 1.2E-35 257.0 11.8 282 34-412 4-306 (384)
75 3fg2_P Putative rubredoxin red 100.0 4.5E-32 1.5E-36 264.9 4.6 281 35-412 2-310 (404)
76 1lvl_A Dihydrolipoamide dehydr 100.0 4.6E-30 1.6E-34 254.5 17.7 296 33-411 4-329 (458)
77 1q1r_A Putidaredoxin reductase 100.0 2.3E-31 7.8E-36 261.7 5.9 286 33-412 3-319 (431)
78 2x8g_A Thioredoxin glutathione 100.0 9.8E-30 3.3E-34 260.6 13.9 304 32-412 105-459 (598)
79 4g6h_A Rotenone-insensitive NA 100.0 5.7E-31 2E-35 262.7 2.4 295 30-414 38-401 (502)
80 3h8l_A NADH oxidase; membrane 100.0 1.2E-29 4.2E-34 248.2 7.9 283 34-413 1-335 (409)
81 3sx6_A Sulfide-quinone reducta 100.0 2.2E-29 7.4E-34 248.4 7.9 289 34-415 4-345 (437)
82 1gte_A Dihydropyrimidine dehyd 99.9 3E-28 1E-32 262.3 12.9 297 32-415 185-509 (1025)
83 1lqt_A FPRA; NADP+ derivative, 99.9 2E-28 6.8E-33 241.6 8.7 299 34-415 3-388 (456)
84 1cjc_A Protein (adrenodoxin re 99.9 7.8E-28 2.7E-32 237.6 10.2 311 33-415 5-396 (460)
85 1m6i_A Programmed cell death p 99.9 4.1E-29 1.4E-33 249.6 0.3 302 33-413 10-353 (493)
86 3k30_A Histamine dehydrogenase 99.9 3.2E-28 1.1E-32 252.7 2.0 272 30-415 387-676 (690)
87 2gag_A Heterotetrameric sarcos 99.9 4.3E-26 1.5E-30 243.9 16.5 280 33-414 127-444 (965)
88 1o94_A Tmadh, trimethylamine d 99.9 1.5E-27 5E-32 248.7 3.9 279 31-414 386-700 (729)
89 3h28_A Sulfide-quinone reducta 99.9 1.1E-27 3.7E-32 235.8 0.5 285 34-416 2-335 (430)
90 1ps9_A 2,4-dienoyl-COA reducta 99.9 9.5E-26 3.3E-30 233.6 10.8 284 31-409 370-671 (671)
91 3vrd_B FCCB subunit, flavocyto 99.9 1.1E-24 3.9E-29 212.5 13.9 287 35-416 3-326 (401)
92 1y56_A Hypothetical protein PH 99.9 2.1E-24 7.1E-29 215.6 12.5 260 33-413 107-376 (493)
93 3hyw_A Sulfide-quinone reducta 99.9 1.2E-26 4.1E-31 228.1 -4.9 285 35-416 3-335 (430)
94 3fpz_A Thiazole biosynthetic e 99.6 2.1E-19 7.1E-24 170.0 -11.5 153 31-235 62-216 (326)
95 2ywl_A Thioredoxin reductase r 99.6 2.6E-16 8.9E-21 135.3 8.8 158 204-414 3-171 (180)
96 2gqf_A Hypothetical protein HI 99.6 7.9E-16 2.7E-20 149.1 11.3 132 34-173 4-170 (401)
97 2e5v_A L-aspartate oxidase; ar 99.6 2.7E-15 9.2E-20 148.6 6.6 193 36-242 1-248 (472)
98 2cul_A Glucose-inhibited divis 99.5 9.6E-14 3.3E-18 124.3 11.3 125 34-174 3-128 (232)
99 2ywl_A Thioredoxin reductase r 99.3 7E-12 2.4E-16 107.4 10.3 109 34-170 1-109 (180)
100 3v76_A Flavoprotein; structura 99.3 1.3E-11 4.3E-16 120.0 12.9 133 33-174 26-190 (417)
101 3cgv_A Geranylgeranyl reductas 99.2 4.3E-11 1.5E-15 115.9 12.0 134 34-171 4-162 (397)
102 3ces_A MNMG, tRNA uridine 5-ca 99.2 1.6E-11 5.5E-16 123.7 8.5 171 33-232 27-220 (651)
103 3oz2_A Digeranylgeranylglycero 99.2 7.9E-11 2.7E-15 113.8 12.9 136 34-172 4-163 (397)
104 1yvv_A Amine oxidase, flavin-c 99.2 1.3E-10 4.6E-15 109.7 13.5 131 34-172 2-163 (336)
105 3rp8_A Flavoprotein monooxygen 99.2 3.6E-11 1.2E-15 117.0 8.9 137 28-173 17-183 (407)
106 2i0z_A NAD(FAD)-utilizing dehy 99.2 5.5E-11 1.9E-15 117.0 10.2 141 26-173 18-193 (447)
107 3fmw_A Oxygenase; mithramycin, 99.2 1.7E-10 5.9E-15 116.6 13.7 137 32-172 47-208 (570)
108 2zxi_A TRNA uridine 5-carboxym 99.2 1.8E-11 6.3E-16 122.8 6.1 173 33-234 26-221 (637)
109 2qa1_A PGAE, polyketide oxygen 99.2 2.4E-10 8.2E-15 113.9 14.0 139 30-172 7-166 (500)
110 3nix_A Flavoprotein/dehydrogen 99.2 2.3E-10 7.8E-15 111.7 13.1 135 34-171 5-166 (421)
111 3qj4_A Renalase; FAD/NAD(P)-bi 99.1 4.1E-11 1.4E-15 113.7 7.0 129 34-169 1-163 (342)
112 2qa2_A CABE, polyketide oxygen 99.1 2.6E-10 9E-15 113.6 13.0 139 30-172 8-167 (499)
113 3i3l_A Alkylhalidase CMLS; fla 99.1 3.3E-10 1.1E-14 114.7 13.3 135 34-171 23-188 (591)
114 2bry_A NEDD9 interacting prote 99.1 4.9E-11 1.7E-15 118.8 7.0 141 32-173 90-232 (497)
115 3nlc_A Uncharacterized protein 99.1 3.1E-10 1.1E-14 113.3 12.2 137 29-171 102-277 (549)
116 3ihg_A RDME; flavoenzyme, anth 99.1 5.5E-10 1.9E-14 112.6 13.6 136 33-172 4-184 (535)
117 3dje_A Fructosyl amine: oxygen 99.1 3.7E-10 1.3E-14 110.9 11.6 63 106-175 159-225 (438)
118 2uzz_A N-methyl-L-tryptophan o 99.1 3.9E-10 1.3E-14 108.1 11.1 63 106-176 147-209 (372)
119 1rp0_A ARA6, thiazole biosynth 99.1 1.3E-09 4.4E-14 100.5 13.7 136 33-170 38-190 (284)
120 2gmh_A Electron transfer flavo 99.1 1.6E-09 5.6E-14 109.9 14.7 141 32-172 33-218 (584)
121 3alj_A 2-methyl-3-hydroxypyrid 99.0 3.2E-10 1.1E-14 109.1 8.9 126 34-172 11-161 (379)
122 3atr_A Conserved archaeal prot 99.0 6.4E-10 2.2E-14 109.7 11.1 136 34-172 6-163 (453)
123 1k0i_A P-hydroxybenzoate hydro 99.0 3.1E-10 1.1E-14 109.8 8.6 137 34-174 2-166 (394)
124 3cp8_A TRNA uridine 5-carboxym 99.0 3.3E-10 1.1E-14 114.1 8.8 173 32-233 19-215 (641)
125 1y0p_A Fumarate reductase flav 99.0 3.2E-09 1.1E-13 107.8 15.5 139 32-172 124-318 (571)
126 3dme_A Conserved exported prot 99.0 9.3E-10 3.2E-14 105.2 10.9 64 106-173 148-211 (369)
127 1ryi_A Glycine oxidase; flavop 99.0 5.7E-10 2E-14 107.4 9.3 135 30-172 13-220 (382)
128 2xdo_A TETX2 protein; tetracyc 99.0 7E-10 2.4E-14 107.5 9.8 132 33-173 25-184 (398)
129 3e1t_A Halogenase; flavoprotei 99.0 3.6E-09 1.2E-13 105.9 15.2 136 34-172 7-173 (512)
130 2x3n_A Probable FAD-dependent 99.0 6.5E-10 2.2E-14 107.7 9.0 132 34-172 6-167 (399)
131 2r0c_A REBC; flavin adenine di 99.0 3.8E-09 1.3E-13 106.6 14.7 135 33-172 25-197 (549)
132 3ps9_A TRNA 5-methylaminomethy 99.0 9.5E-10 3.2E-14 113.9 10.3 60 106-172 415-474 (676)
133 3c96_A Flavin-containing monoo 99.0 5.3E-09 1.8E-13 101.7 14.8 137 34-173 4-171 (410)
134 2gf3_A MSOX, monomeric sarcosi 99.0 1.8E-09 6E-14 104.2 11.1 59 106-172 148-206 (389)
135 3pvc_A TRNA 5-methylaminomethy 99.0 2.9E-09 9.8E-14 110.5 13.1 60 106-172 410-470 (689)
136 1qo8_A Flavocytochrome C3 fuma 99.0 5.3E-09 1.8E-13 106.0 14.7 140 32-172 119-313 (566)
137 1y56_B Sarcosine oxidase; dehy 99.0 2.8E-09 9.4E-14 102.6 11.9 59 105-171 146-205 (382)
138 3da1_A Glycerol-3-phosphate de 99.0 4.9E-09 1.7E-13 105.9 13.7 65 106-171 168-232 (561)
139 2vou_A 2,6-dihydroxypyridine h 99.0 3.6E-09 1.2E-13 102.4 12.3 129 34-172 5-154 (397)
140 3nyc_A D-arginine dehydrogenas 99.0 1.4E-09 4.9E-14 104.4 9.3 60 105-172 151-210 (381)
141 3jsk_A Cypbp37 protein; octame 99.0 4.1E-09 1.4E-13 98.3 12.0 139 32-171 77-251 (344)
142 2qcu_A Aerobic glycerol-3-phos 98.9 1.2E-08 4.2E-13 101.7 15.2 65 106-172 147-211 (501)
143 2oln_A NIKD protein; flavoprot 98.9 3.7E-09 1.3E-13 102.3 10.9 58 106-171 151-208 (397)
144 2dkh_A 3-hydroxybenzoate hydro 98.9 1.3E-08 4.3E-13 104.6 14.7 140 33-172 31-212 (639)
145 4at0_A 3-ketosteroid-delta4-5a 98.9 3.7E-08 1.3E-12 98.4 15.9 61 109-171 203-264 (510)
146 2gag_B Heterotetrameric sarcos 98.9 5.1E-09 1.8E-13 101.5 9.3 60 105-171 171-230 (405)
147 1pn0_A Phenol 2-monooxygenase; 98.8 3.7E-08 1.3E-12 101.4 15.7 139 34-172 8-231 (665)
148 4hb9_A Similarities with proba 98.8 8.1E-09 2.8E-13 100.2 10.0 129 36-173 3-168 (412)
149 1d4d_A Flavocytochrome C fumar 98.8 5.5E-08 1.9E-12 98.5 16.3 140 32-172 124-318 (572)
150 2gjc_A Thiazole biosynthetic e 98.8 2.2E-08 7.6E-13 92.8 11.8 107 32-138 63-177 (326)
151 2rgh_A Alpha-glycerophosphate 98.8 2.7E-08 9.3E-13 100.6 13.4 66 106-172 186-251 (571)
152 2aqj_A Tryptophan halogenase, 98.8 6.3E-09 2.2E-13 104.8 7.9 62 105-172 162-223 (538)
153 3c4n_A Uncharacterized protein 98.8 3.2E-09 1.1E-13 103.1 5.1 130 34-171 36-236 (405)
154 2weu_A Tryptophan 5-halogenase 98.8 7.2E-09 2.5E-13 103.8 7.3 62 105-172 170-231 (511)
155 4dgk_A Phytoene dehydrogenase; 98.7 2.1E-08 7.3E-13 100.1 9.7 39 34-72 1-39 (501)
156 3k7m_X 6-hydroxy-L-nicotine ox 98.7 2E-08 6.7E-13 98.3 9.3 40 34-73 1-40 (431)
157 2e4g_A Tryptophan halogenase; 98.7 1.4E-08 4.6E-13 102.6 8.0 62 105-172 191-253 (550)
158 2wdq_A Succinate dehydrogenase 98.7 1.3E-07 4.6E-12 95.8 14.6 139 34-172 7-207 (588)
159 3ka7_A Oxidoreductase; structu 98.7 3E-08 1E-12 96.8 9.5 39 35-73 1-39 (425)
160 1kf6_A Fumarate reductase flav 98.7 1.7E-07 5.7E-12 95.3 14.8 139 34-173 5-199 (602)
161 3kkj_A Amine oxidase, flavin-c 98.7 2.3E-08 7.8E-13 91.2 7.1 43 33-75 1-43 (336)
162 1pj5_A N,N-dimethylglycine oxi 98.7 6.1E-08 2.1E-12 102.7 11.2 58 106-171 149-207 (830)
163 2h88_A Succinate dehydrogenase 98.7 2.7E-07 9.1E-12 93.8 14.7 139 33-172 17-218 (621)
164 3nrn_A Uncharacterized protein 98.7 3.2E-08 1.1E-12 96.5 7.4 39 35-73 1-39 (421)
165 2bs2_A Quinol-fumarate reducta 98.6 4.3E-07 1.5E-11 93.0 15.9 65 107-172 157-221 (660)
166 2pyx_A Tryptophan halogenase; 98.6 9.8E-08 3.4E-12 95.8 10.1 62 105-172 172-234 (526)
167 1chu_A Protein (L-aspartate ox 98.6 1.3E-07 4.5E-12 94.9 10.4 139 33-172 7-209 (540)
168 2yqu_A 2-oxoglutarate dehydrog 98.6 1.7E-07 5.7E-12 92.4 10.6 100 34-175 167-266 (455)
169 3i6d_A Protoporphyrinogen oxid 98.6 4.6E-08 1.6E-12 96.7 6.3 39 34-72 5-49 (470)
170 2v3a_A Rubredoxin reductase; a 98.6 3.4E-07 1.2E-11 88.0 12.1 97 34-169 145-241 (384)
171 3nks_A Protoporphyrinogen oxid 98.6 1.2E-07 4.1E-12 93.9 8.5 40 34-73 2-43 (477)
172 2eq6_A Pyruvate dehydrogenase 98.5 3.7E-07 1.3E-11 90.1 11.4 105 34-175 169-273 (464)
173 1jnr_A Adenylylsulfate reducta 98.5 9.4E-07 3.2E-11 90.6 14.7 145 32-176 20-223 (643)
174 4b1b_A TRXR, thioredoxin reduc 98.5 6.4E-07 2.2E-11 89.5 12.9 100 33-175 222-321 (542)
175 1nhp_A NADH peroxidase; oxidor 98.5 2.3E-07 8E-12 91.1 9.4 102 33-176 148-249 (447)
176 1ebd_A E3BD, dihydrolipoamide 98.5 6.7E-07 2.3E-11 88.0 12.6 103 34-175 170-272 (455)
177 3gyx_A Adenylylsulfate reducta 98.5 4E-07 1.4E-11 93.2 11.2 66 107-172 165-234 (662)
178 1v59_A Dihydrolipoamide dehydr 98.5 8.3E-07 2.8E-11 87.9 13.0 107 34-175 183-289 (478)
179 3axb_A Putative oxidoreductase 98.5 2E-07 6.9E-12 91.6 8.0 61 105-172 178-255 (448)
180 2r9z_A Glutathione amide reduc 98.5 7.2E-07 2.5E-11 87.9 11.2 100 34-175 166-266 (463)
181 3urh_A Dihydrolipoyl dehydroge 98.5 1.6E-06 5.4E-11 86.2 13.7 105 34-175 198-302 (491)
182 1ges_A Glutathione reductase; 98.4 7.1E-07 2.4E-11 87.7 10.6 101 34-175 167-267 (450)
183 3c4a_A Probable tryptophan hyd 98.4 6.6E-08 2.3E-12 92.9 2.6 119 36-172 2-144 (381)
184 3s5w_A L-ornithine 5-monooxyge 98.4 2.1E-06 7.3E-11 84.6 13.0 130 33-169 226-375 (463)
185 1zmd_A Dihydrolipoyl dehydroge 98.4 2E-06 6.7E-11 85.2 12.7 107 34-175 178-284 (474)
186 3lxd_A FAD-dependent pyridine 98.4 1.4E-06 4.9E-11 84.6 11.5 98 34-169 152-249 (415)
187 1zk7_A HGII, reductase, mercur 98.4 1.6E-06 5.4E-11 85.6 11.7 94 34-169 176-269 (467)
188 1dxl_A Dihydrolipoamide dehydr 98.4 1.2E-06 4.2E-11 86.5 10.9 101 34-169 177-277 (470)
189 3oc4_A Oxidoreductase, pyridin 98.4 2.4E-06 8.3E-11 83.9 12.6 102 33-176 146-247 (452)
190 4gut_A Lysine-specific histone 98.4 1.9E-06 6.4E-11 89.7 12.2 40 32-71 334-373 (776)
191 3ef6_A Toluene 1,2-dioxygenase 98.4 8.9E-07 3E-11 85.9 9.2 97 34-169 143-239 (410)
192 1onf_A GR, grase, glutathione 98.4 1.9E-06 6.4E-11 85.8 11.7 101 34-175 176-277 (500)
193 3dgz_A Thioredoxin reductase 2 98.4 4.4E-06 1.5E-10 82.9 14.2 101 34-169 185-285 (488)
194 2a8x_A Dihydrolipoyl dehydroge 98.4 2.3E-06 8E-11 84.3 12.0 103 34-175 171-273 (464)
195 3dgh_A TRXR-1, thioredoxin red 98.4 4.6E-06 1.6E-10 82.6 14.2 101 34-169 187-287 (483)
196 1xdi_A RV3303C-LPDA; reductase 98.4 2E-06 6.8E-11 85.7 11.5 96 34-169 182-277 (499)
197 1ojt_A Surface protein; redox- 98.3 8.7E-07 3E-11 87.8 8.6 103 34-175 185-288 (482)
198 3fg2_P Putative rubredoxin red 98.3 2.4E-06 8.1E-11 82.7 11.5 99 33-169 141-239 (404)
199 3cgb_A Pyridine nucleotide-dis 98.3 1.4E-06 4.8E-11 86.3 10.1 96 33-169 185-280 (480)
200 2gqw_A Ferredoxin reductase; f 98.3 2.3E-06 7.9E-11 82.8 11.3 93 34-169 145-237 (408)
201 2qae_A Lipoamide, dihydrolipoy 98.3 3.1E-06 1E-10 83.6 12.2 100 34-169 174-274 (468)
202 1mo9_A ORF3; nucleotide bindin 98.3 2.1E-06 7.1E-11 86.0 11.1 96 35-169 215-314 (523)
203 3ic9_A Dihydrolipoamide dehydr 98.3 3.7E-06 1.3E-10 83.5 12.8 103 34-175 174-276 (492)
204 1lvl_A Dihydrolipoamide dehydr 98.3 7.8E-07 2.7E-11 87.6 7.5 101 34-176 171-271 (458)
205 2cdu_A NADPH oxidase; flavoenz 98.3 2.7E-06 9.2E-11 83.6 11.3 102 33-175 148-249 (452)
206 3dk9_A Grase, GR, glutathione 98.3 4.3E-06 1.5E-10 82.8 12.8 103 34-169 187-291 (478)
207 1q1r_A Putidaredoxin reductase 98.3 2.4E-06 8.3E-11 83.3 10.8 98 34-169 149-248 (431)
208 3iwa_A FAD-dependent pyridine 98.3 3.1E-06 1.1E-10 83.6 11.8 97 34-169 159-256 (472)
209 1fec_A Trypanothione reductase 98.3 2.2E-06 7.4E-11 85.1 10.5 101 34-175 187-290 (490)
210 2wpf_A Trypanothione reductase 98.3 2.6E-06 9E-11 84.6 10.7 97 34-169 191-290 (495)
211 1rp0_A ARA6, thiazole biosynth 98.3 3.1E-07 1.1E-11 84.3 3.4 190 203-415 40-276 (284)
212 3lad_A Dihydrolipoamide dehydr 98.3 4.9E-06 1.7E-10 82.3 12.2 103 34-175 180-282 (476)
213 4gde_A UDP-galactopyranose mut 98.3 3.7E-07 1.3E-11 91.2 4.1 43 31-73 7-50 (513)
214 1trb_A Thioredoxin reductase; 98.3 3.7E-06 1.3E-10 78.4 10.6 101 33-169 144-245 (320)
215 2hqm_A GR, grase, glutathione 98.3 4.3E-06 1.5E-10 82.7 11.5 104 33-175 184-287 (479)
216 3o0h_A Glutathione reductase; 98.3 3.1E-06 1.1E-10 83.9 10.4 96 34-169 191-286 (484)
217 3qfa_A Thioredoxin reductase 1 98.3 1.4E-05 4.7E-10 79.9 15.0 102 34-169 210-313 (519)
218 2bc0_A NADH oxidase; flavoprot 98.2 2.9E-06 1E-10 84.2 10.0 101 33-175 193-293 (490)
219 1m6i_A Programmed cell death p 98.2 3.9E-06 1.3E-10 83.3 10.5 97 34-169 180-280 (493)
220 1xhc_A NADH oxidase /nitrite r 98.2 1.5E-06 5.3E-11 82.8 7.3 89 35-169 144-232 (367)
221 3ntd_A FAD-dependent pyridine 98.2 5.3E-06 1.8E-10 83.9 11.5 99 33-169 150-265 (565)
222 2zbw_A Thioredoxin reductase; 98.2 8.1E-06 2.8E-10 76.6 11.8 100 33-169 151-250 (335)
223 4eqs_A Coenzyme A disulfide re 98.2 2.5E-06 8.6E-11 83.3 7.6 92 34-169 147-238 (437)
224 4dna_A Probable glutathione re 98.1 8.1E-06 2.8E-10 80.4 10.6 96 34-169 170-266 (463)
225 3pl8_A Pyranose 2-oxidase; sub 98.1 7.2E-06 2.5E-10 83.6 10.3 41 33-73 45-85 (623)
226 3hyw_A Sulfide-quinone reducta 98.1 5.1E-06 1.8E-10 81.0 8.7 103 203-353 3-110 (430)
227 2cul_A Glucose-inhibited divis 98.1 3E-06 1E-10 75.3 6.3 175 203-413 4-231 (232)
228 3klj_A NAD(FAD)-dependent dehy 98.1 5E-06 1.7E-10 79.7 8.1 106 202-354 9-118 (385)
229 2e1m_A L-glutamate oxidase; L- 98.1 1.9E-06 6.3E-11 81.9 4.3 44 32-75 42-86 (376)
230 3hdq_A UDP-galactopyranose mut 98.1 2.2E-06 7.5E-11 82.1 4.7 44 32-75 27-70 (397)
231 2bcg_G Secretory pathway GDP d 98.1 3.1E-06 1.1E-10 83.1 5.5 43 33-75 10-52 (453)
232 4g6h_A Rotenone-insensitive NA 98.0 1.1E-05 3.7E-10 80.1 9.2 97 35-169 218-330 (502)
233 3ics_A Coenzyme A-disulfide re 98.0 1.2E-05 4.2E-10 81.6 9.7 95 33-169 186-280 (588)
234 2b9w_A Putative aminooxidase; 98.0 5E-06 1.7E-10 80.9 6.5 43 33-75 5-48 (424)
235 3sx6_A Sulfide-quinone reducta 98.0 1.2E-05 3.9E-10 78.7 9.0 104 203-354 5-114 (437)
236 3fbs_A Oxidoreductase; structu 98.0 9.3E-06 3.2E-10 74.6 7.8 33 203-235 3-35 (297)
237 3kd9_A Coenzyme A disulfide re 98.0 1.8E-05 6.2E-10 77.6 10.3 96 33-169 147-242 (449)
238 1v0j_A UDP-galactopyranose mut 98.0 4.2E-06 1.5E-10 80.7 5.6 43 33-75 6-49 (399)
239 3ab1_A Ferredoxin--NADP reduct 98.0 1.6E-05 5.5E-10 75.4 9.5 99 33-169 162-261 (360)
240 3d1c_A Flavin-containing putat 98.0 1.4E-05 4.8E-10 76.0 9.0 107 34-175 166-274 (369)
241 1fl2_A Alkyl hydroperoxide red 98.0 3.9E-05 1.3E-09 71.0 11.8 96 33-169 143-240 (310)
242 3vrd_B FCCB subunit, flavocyto 98.0 7.6E-06 2.6E-10 79.0 7.0 105 201-354 1-110 (401)
243 3itj_A Thioredoxin reductase 1 98.0 4.4E-05 1.5E-09 71.5 11.8 97 33-169 172-269 (338)
244 2q7v_A Thioredoxin reductase; 98.0 1.7E-05 5.7E-10 74.2 8.7 97 33-169 151-247 (325)
245 3f8d_A Thioredoxin reductase ( 98.0 2.6E-05 9E-10 72.5 9.7 98 32-169 152-249 (323)
246 3h8l_A NADH oxidase; membrane 98.0 1E-05 3.4E-10 78.4 6.9 104 203-354 2-115 (409)
247 2q0l_A TRXR, thioredoxin reduc 97.9 2.4E-05 8.2E-10 72.5 9.0 97 33-169 142-239 (311)
248 1rsg_A FMS1 protein; FAD bindi 97.9 4.5E-06 1.5E-10 83.5 4.0 40 34-73 8-48 (516)
249 3cty_A Thioredoxin reductase; 97.9 5.8E-05 2E-09 70.2 11.3 97 33-169 154-250 (319)
250 1s3e_A Amine oxidase [flavin-c 97.9 7E-06 2.4E-10 82.2 5.3 39 34-72 4-42 (520)
251 1vdc_A NTR, NADPH dependent th 97.9 2.3E-05 7.8E-10 73.4 8.2 99 33-169 158-257 (333)
252 3lzw_A Ferredoxin--NADP reduct 97.9 5.4E-05 1.9E-09 70.6 10.7 96 33-169 153-248 (332)
253 1sez_A Protoporphyrinogen oxid 97.9 6.8E-06 2.3E-10 81.9 4.8 43 32-74 11-53 (504)
254 4dsg_A UDP-galactopyranose mut 97.9 1.4E-05 4.9E-10 79.0 6.8 43 33-75 8-51 (484)
255 3h28_A Sulfide-quinone reducta 97.9 2.3E-05 8E-10 76.3 8.2 105 203-355 3-112 (430)
256 3l8k_A Dihydrolipoyl dehydroge 97.9 5.5E-05 1.9E-09 74.5 10.9 103 34-175 172-274 (466)
257 1i8t_A UDP-galactopyranose mut 97.9 8.1E-06 2.8E-10 77.8 4.7 41 35-75 2-42 (367)
258 2x8g_A Thioredoxin glutathione 97.9 0.00018 6.2E-09 73.1 14.7 101 34-169 286-393 (598)
259 2jae_A L-amino acid oxidase; o 97.9 9.9E-06 3.4E-10 80.4 5.1 40 33-72 10-49 (489)
260 2yg5_A Putrescine oxidase; oxi 97.9 9.3E-06 3.2E-10 79.7 4.9 40 34-73 5-44 (453)
261 2ivd_A PPO, PPOX, protoporphyr 97.8 1.3E-05 4.5E-10 79.2 5.7 40 33-72 15-54 (478)
262 2bi7_A UDP-galactopyranose mut 97.8 1.2E-05 4E-10 77.1 5.0 41 35-75 4-44 (384)
263 3lov_A Protoporphyrinogen oxid 97.8 1.2E-05 4.2E-10 79.4 4.9 39 34-72 4-44 (475)
264 2a87_A TRXR, TR, thioredoxin r 97.8 1.9E-05 6.4E-10 74.2 5.7 97 33-169 154-250 (335)
265 2vvm_A Monoamine oxidase N; FA 97.8 1.3E-05 4.4E-10 79.7 4.4 40 33-72 38-77 (495)
266 4fk1_A Putative thioredoxin re 97.7 9.8E-05 3.4E-09 68.2 9.4 32 204-235 8-39 (304)
267 3ihm_A Styrene monooxygenase A 97.7 1.4E-05 4.9E-10 77.8 3.8 35 33-67 21-55 (430)
268 1b37_A Protein (polyamine oxid 97.7 2.7E-05 9.4E-10 76.8 5.9 43 33-75 3-46 (472)
269 1d5t_A Guanine nucleotide diss 97.7 2.7E-05 9.3E-10 75.9 5.8 43 33-75 5-47 (433)
270 3r9u_A Thioredoxin reductase; 97.7 7.3E-05 2.5E-09 69.2 8.4 96 33-169 146-242 (315)
271 1c0p_A D-amino acid oxidase; a 97.7 2.5E-05 8.4E-10 74.2 5.0 35 33-67 5-39 (363)
272 1hyu_A AHPF, alkyl hydroperoxi 97.7 0.00015 5.3E-09 72.3 10.7 96 33-169 354-451 (521)
273 2iid_A L-amino-acid oxidase; f 97.7 1.9E-05 6.5E-10 78.5 4.0 42 32-73 31-72 (498)
274 3k30_A Histamine dehydrogenase 97.7 0.00011 3.7E-09 76.1 9.6 97 35-169 524-622 (690)
275 4a9w_A Monooxygenase; baeyer-v 97.7 5.3E-05 1.8E-09 71.4 6.7 33 203-235 4-36 (357)
276 3p1w_A Rabgdi protein; GDI RAB 97.7 2.5E-05 8.7E-10 76.3 4.4 44 32-75 18-61 (475)
277 3v76_A Flavoprotein; structura 97.6 6.5E-05 2.2E-09 72.7 6.7 35 202-236 27-61 (417)
278 3g5s_A Methylenetetrahydrofola 97.6 6.2E-05 2.1E-09 70.8 5.9 36 34-69 1-36 (443)
279 4a5l_A Thioredoxin reductase; 97.6 0.00018 6E-09 66.6 8.8 102 33-175 151-252 (314)
280 2gqf_A Hypothetical protein HI 97.5 0.00017 5.9E-09 69.4 7.7 33 203-235 5-37 (401)
281 3g3e_A D-amino-acid oxidase; F 97.5 5.1E-05 1.8E-09 71.7 3.7 33 36-68 2-40 (351)
282 2z3y_A Lysine-specific histone 97.5 5.4E-05 1.9E-09 77.9 4.0 42 31-72 104-145 (662)
283 2xag_A Lysine-specific histone 97.5 6.9E-05 2.3E-09 78.7 4.4 42 32-73 276-317 (852)
284 3jsk_A Cypbp37 protein; octame 97.4 0.00015 5E-09 67.6 5.7 33 203-235 80-114 (344)
285 2bry_A NEDD9 interacting prote 97.4 0.00038 1.3E-08 69.0 8.9 36 201-236 91-126 (497)
286 2gag_A Heterotetrameric sarcos 97.4 0.00067 2.3E-08 72.7 11.1 96 34-174 284-384 (965)
287 2gjc_A Thiazole biosynthetic e 97.4 0.00025 8.5E-09 65.6 6.7 32 204-235 67-100 (326)
288 3nlc_A Uncharacterized protein 97.4 0.0003 1E-08 70.2 7.8 34 202-235 107-140 (549)
289 2vdc_G Glutamate synthase [NAD 97.3 0.00023 7.9E-09 69.6 6.4 100 33-169 263-376 (456)
290 2xve_A Flavin-containing monoo 97.3 0.00044 1.5E-08 67.9 8.2 36 33-68 196-231 (464)
291 3alj_A 2-methyl-3-hydroxypyrid 97.3 0.00031 1.1E-08 67.0 6.7 141 202-354 11-162 (379)
292 1cjc_A Protein (adrenodoxin re 97.2 0.0018 6.1E-08 63.4 11.2 35 33-67 144-199 (460)
293 4gcm_A TRXR, thioredoxin reduc 97.2 0.0013 4.4E-08 60.7 9.6 35 34-68 145-179 (312)
294 1ju2_A HydroxynitrIle lyase; f 97.2 0.0001 3.5E-09 73.8 1.9 37 32-69 24-60 (536)
295 1o94_A Tmadh, trimethylamine d 97.2 0.00081 2.8E-08 69.9 8.5 99 34-169 528-644 (729)
296 1lqt_A FPRA; NADP+ derivative, 97.1 0.0021 7E-08 62.9 10.8 132 33-172 146-327 (456)
297 1kdg_A CDH, cellobiose dehydro 97.1 0.00027 9.3E-09 71.0 4.5 36 32-67 5-40 (546)
298 2i0z_A NAD(FAD)-utilizing dehy 97.1 0.00038 1.3E-08 68.1 4.7 33 203-235 27-59 (447)
299 2gv8_A Monooxygenase; FMO, FAD 97.1 0.0014 4.9E-08 63.9 8.7 35 33-67 211-246 (447)
300 1ps9_A 2,4-dienoyl-COA reducta 97.1 0.00082 2.8E-08 69.2 7.2 124 34-169 494-626 (671)
301 3nix_A Flavoprotein/dehydrogen 97.0 0.00031 1.1E-08 67.9 3.8 33 203-235 6-38 (421)
302 3t37_A Probable dehydrogenase; 97.0 0.00028 9.7E-09 70.5 3.5 38 31-68 14-52 (526)
303 1gte_A Dihydropyrimidine dehyd 97.0 0.0031 1.1E-07 68.1 11.7 96 35-169 333-440 (1025)
304 3gwf_A Cyclohexanone monooxyge 97.0 0.00062 2.1E-08 68.1 5.8 33 203-235 9-42 (540)
305 3uox_A Otemo; baeyer-villiger 97.0 0.0013 4.6E-08 65.8 8.1 33 203-235 10-42 (545)
306 2x3n_A Probable FAD-dependent 97.0 0.0011 3.7E-08 63.7 7.0 34 203-236 7-40 (399)
307 1vg0_A RAB proteins geranylger 97.0 0.00071 2.4E-08 68.3 5.8 43 33-75 7-49 (650)
308 4ap3_A Steroid monooxygenase; 97.0 0.0013 4.6E-08 65.8 7.7 33 203-235 22-54 (549)
309 2xdo_A TETX2 protein; tetracyc 96.9 0.0014 4.9E-08 62.8 7.2 35 202-236 26-60 (398)
310 3fmw_A Oxygenase; mithramycin, 96.9 0.00045 1.5E-08 69.6 3.4 34 203-236 50-83 (570)
311 3ces_A MNMG, tRNA uridine 5-ca 96.9 0.00092 3.1E-08 67.5 5.4 33 203-235 29-61 (651)
312 2zxi_A TRNA uridine 5-carboxym 96.8 0.0015 5.2E-08 65.7 6.2 33 203-235 28-60 (637)
313 3ayj_A Pro-enzyme of L-phenyla 96.8 0.00039 1.4E-08 71.1 1.8 36 34-69 56-100 (721)
314 3dfz_A SIRC, precorrin-2 dehyd 96.8 0.0013 4.4E-08 57.2 4.8 36 199-234 28-63 (223)
315 2vou_A 2,6-dihydroxypyridine h 96.7 0.0019 6.7E-08 61.8 6.5 35 202-236 5-39 (397)
316 3rp8_A Flavoprotein monooxygen 96.7 0.00068 2.3E-08 65.3 3.2 35 201-235 22-56 (407)
317 3q9t_A Choline dehydrogenase a 96.7 0.00077 2.6E-08 67.8 3.6 36 33-68 5-41 (577)
318 1yvv_A Amine oxidase, flavin-c 96.7 0.0023 7.7E-08 59.6 6.5 33 203-235 3-35 (336)
319 1n4w_A CHOD, cholesterol oxida 96.7 0.0014 4.7E-08 65.1 4.9 36 34-69 5-40 (504)
320 3cp8_A TRNA uridine 5-carboxym 96.6 0.002 7E-08 65.0 6.1 33 203-235 22-54 (641)
321 4hb9_A Similarities with proba 96.6 0.003 1E-07 60.6 7.0 33 204-236 3-35 (412)
322 3qj4_A Renalase; FAD/NAD(P)-bi 96.6 0.0023 7.9E-08 59.9 6.0 33 203-235 2-37 (342)
323 1y0p_A Fumarate reductase flav 96.6 0.0048 1.7E-07 62.2 8.6 33 203-235 127-159 (571)
324 3i3l_A Alkylhalidase CMLS; fla 96.6 0.0022 7.7E-08 64.7 5.8 34 202-235 23-56 (591)
325 3qvp_A Glucose oxidase; oxidor 96.6 0.0012 4E-08 66.5 3.6 71 110-181 229-303 (583)
326 1coy_A Cholesterol oxidase; ox 96.4 0.0018 6.3E-08 64.2 4.3 36 33-68 10-45 (507)
327 3e1t_A Halogenase; flavoprotei 96.4 0.0026 9E-08 63.2 5.4 33 203-235 8-40 (512)
328 1k0i_A P-hydroxybenzoate hydro 96.4 0.0032 1.1E-07 60.2 5.5 33 203-235 3-35 (394)
329 1ryi_A Glycine oxidase; flavop 96.4 0.0039 1.3E-07 59.2 6.0 33 203-235 18-50 (382)
330 3cgv_A Geranylgeranyl reductas 96.3 0.00062 2.1E-08 65.1 -0.0 33 203-235 5-37 (397)
331 1qo8_A Flavocytochrome C3 fuma 96.3 0.0057 2E-07 61.6 7.0 33 203-235 122-154 (566)
332 2gag_B Heterotetrameric sarcos 96.3 0.0039 1.3E-07 59.7 5.6 33 203-235 22-56 (405)
333 3fim_B ARYL-alcohol oxidase; A 96.3 0.0012 3.9E-08 66.4 1.8 36 34-69 2-38 (566)
334 1gpe_A Protein (glucose oxidas 96.3 0.0026 8.9E-08 64.3 4.2 36 33-68 23-59 (587)
335 2jbv_A Choline oxidase; alcoho 96.2 0.0024 8.4E-08 63.9 3.6 37 33-69 12-49 (546)
336 3atr_A Conserved archaeal prot 96.2 0.003 1E-07 61.7 4.0 33 203-235 7-39 (453)
337 1w4x_A Phenylacetone monooxyge 96.2 0.013 4.5E-07 58.6 8.7 33 203-235 17-49 (542)
338 3fwz_A Inner membrane protein 96.1 0.0059 2E-07 49.0 4.7 35 33-67 6-40 (140)
339 2qa2_A CABE, polyketide oxygen 95.9 0.002 6.8E-08 63.8 1.4 35 202-236 12-46 (499)
340 4at0_A 3-ketosteroid-delta4-5a 95.9 0.011 3.9E-07 58.6 6.6 34 203-236 42-75 (510)
341 3llv_A Exopolyphosphatase-rela 95.8 0.012 4.3E-07 47.0 5.4 34 34-67 6-39 (141)
342 2pyx_A Tryptophan halogenase; 95.7 0.011 3.6E-07 59.0 5.8 34 202-235 7-52 (526)
343 3ihg_A RDME; flavoenzyme, anth 95.7 0.016 5.4E-07 57.9 7.0 34 203-236 6-39 (535)
344 2qa1_A PGAE, polyketide oxygen 95.6 0.0021 7.1E-08 63.7 0.2 35 202-236 11-45 (500)
345 2g1u_A Hypothetical protein TM 95.6 0.01 3.4E-07 48.5 4.3 34 34-67 19-52 (155)
346 3kkj_A Amine oxidase, flavin-c 95.5 0.0054 1.8E-07 54.8 2.6 32 204-235 4-35 (336)
347 1d4d_A Flavocytochrome C fumar 95.5 0.049 1.7E-06 54.8 9.8 34 202-235 126-159 (572)
348 3ic5_A Putative saccharopine d 95.3 0.011 3.9E-07 45.3 3.4 34 34-67 5-39 (118)
349 1y56_A Hypothetical protein PH 95.3 0.0099 3.4E-07 58.7 3.8 32 203-235 109-140 (493)
350 1id1_A Putative potassium chan 95.2 0.028 9.6E-07 45.6 5.7 33 35-67 4-36 (153)
351 1chu_A Protein (L-aspartate ox 95.1 0.053 1.8E-06 54.1 8.5 32 203-235 9-40 (540)
352 2hmt_A YUAA protein; RCK, KTN, 95.0 0.029 9.9E-07 44.7 5.1 34 34-67 6-39 (144)
353 1lss_A TRK system potassium up 95.0 0.022 7.5E-07 45.2 4.3 32 36-67 6-37 (140)
354 4b63_A L-ornithine N5 monooxyg 94.9 0.19 6.6E-06 49.5 11.6 36 32-67 244-281 (501)
355 4dgk_A Phytoene dehydrogenase; 94.8 0.0094 3.2E-07 58.9 2.0 33 203-235 2-34 (501)
356 3c85_A Putative glutathione-re 94.5 0.038 1.3E-06 46.3 4.9 34 34-67 39-73 (183)
357 3ado_A Lambda-crystallin; L-gu 94.3 0.038 1.3E-06 50.7 4.7 33 35-67 7-39 (319)
358 1pjq_A CYSG, siroheme synthase 94.1 0.028 9.7E-07 54.7 3.6 35 200-234 10-44 (457)
359 3l4b_C TRKA K+ channel protien 94.0 0.05 1.7E-06 47.1 4.6 32 36-67 2-33 (218)
360 3dfz_A SIRC, precorrin-2 dehyd 94.0 0.063 2.2E-06 46.5 5.1 36 32-67 29-64 (223)
361 3lk7_A UDP-N-acetylmuramoylala 93.9 0.08 2.7E-06 51.5 6.3 36 200-235 7-42 (451)
362 3oz2_A Digeranylgeranylglycero 93.7 0.028 9.7E-07 53.2 2.8 33 204-236 6-38 (397)
363 3ihm_A Styrene monooxygenase A 93.7 0.028 9.7E-07 54.3 2.7 34 202-235 22-55 (430)
364 3qha_A Putative oxidoreductase 93.5 0.051 1.8E-06 49.6 4.0 35 34-68 15-49 (296)
365 1f0y_A HCDH, L-3-hydroxyacyl-C 93.4 0.056 1.9E-06 49.5 4.1 34 34-67 15-48 (302)
366 1kyq_A Met8P, siroheme biosynt 93.4 0.047 1.6E-06 48.9 3.4 36 200-235 11-46 (274)
367 3g5s_A Methylenetetrahydrofola 93.3 0.045 1.5E-06 51.6 3.2 34 203-236 2-35 (443)
368 3doj_A AT3G25530, dehydrogenas 93.0 0.068 2.3E-06 49.1 3.9 38 30-67 17-54 (310)
369 2g1u_A Hypothetical protein TM 92.9 0.066 2.3E-06 43.5 3.4 36 200-235 17-52 (155)
370 3i83_A 2-dehydropantoate 2-red 92.9 0.076 2.6E-06 49.0 4.2 33 35-67 3-35 (320)
371 4dll_A 2-hydroxy-3-oxopropiona 92.9 0.06 2.1E-06 49.7 3.5 37 31-67 28-64 (320)
372 1pzg_A LDH, lactate dehydrogen 92.9 0.062 2.1E-06 49.9 3.5 33 35-67 10-43 (331)
373 3hn2_A 2-dehydropantoate 2-red 92.9 0.083 2.8E-06 48.6 4.3 33 35-67 3-35 (312)
374 4e12_A Diketoreductase; oxidor 92.8 0.085 2.9E-06 47.7 4.3 34 34-67 4-37 (283)
375 2oln_A NIKD protein; flavoprot 92.8 0.059 2E-06 51.3 3.4 33 203-235 5-37 (397)
376 4dio_A NAD(P) transhydrogenase 92.8 0.062 2.1E-06 50.9 3.4 37 31-67 187-223 (405)
377 1z82_A Glycerol-3-phosphate de 92.8 0.083 2.8E-06 49.1 4.3 38 30-67 10-47 (335)
378 2dpo_A L-gulonate 3-dehydrogen 92.7 0.099 3.4E-06 48.1 4.6 34 34-67 6-39 (319)
379 1kyq_A Met8P, siroheme biosynt 92.6 0.061 2.1E-06 48.2 3.0 35 33-67 12-46 (274)
380 3g17_A Similar to 2-dehydropan 92.6 0.12 3.9E-06 47.1 4.9 33 35-67 3-35 (294)
381 3nrn_A Uncharacterized protein 92.6 0.052 1.8E-06 52.2 2.7 33 203-235 1-33 (421)
382 3dme_A Conserved exported prot 92.6 0.056 1.9E-06 50.6 2.8 33 203-235 5-37 (369)
383 3hwr_A 2-dehydropantoate 2-red 92.4 0.095 3.3E-06 48.3 4.1 37 198-235 15-51 (318)
384 4ffl_A PYLC; amino acid, biosy 92.4 0.11 3.7E-06 48.8 4.6 35 34-68 1-35 (363)
385 2vns_A Metalloreductase steap3 92.3 0.17 5.7E-06 43.7 5.4 34 34-67 28-61 (215)
386 3ka7_A Oxidoreductase; structu 92.3 0.056 1.9E-06 51.9 2.5 32 204-235 2-33 (425)
387 2raf_A Putative dinucleotide-b 92.3 0.12 4E-06 44.5 4.2 34 35-68 20-53 (209)
388 1id1_A Putative potassium chan 92.2 0.1 3.5E-06 42.2 3.7 34 202-235 3-36 (153)
389 2uzz_A N-methyl-L-tryptophan o 92.2 0.051 1.7E-06 51.1 2.0 32 204-235 4-35 (372)
390 2gf3_A MSOX, monomeric sarcosi 92.2 0.067 2.3E-06 50.6 2.8 33 203-235 4-36 (389)
391 2iid_A L-amino-acid oxidase; f 92.1 0.06 2.1E-06 53.0 2.5 35 201-235 32-66 (498)
392 2x5o_A UDP-N-acetylmuramoylala 92.1 0.11 3.9E-06 50.2 4.4 36 34-69 5-40 (439)
393 3c96_A Flavin-containing monoo 92.0 0.084 2.9E-06 50.5 3.4 34 203-236 5-39 (410)
394 3eag_A UDP-N-acetylmuramate:L- 92.0 0.17 5.7E-06 46.8 5.3 34 202-235 4-38 (326)
395 1lld_A L-lactate dehydrogenase 92.0 0.12 4.1E-06 47.6 4.3 33 35-67 8-42 (319)
396 3p2y_A Alanine dehydrogenase/p 92.0 0.074 2.5E-06 49.9 2.8 36 32-67 182-217 (381)
397 4a7p_A UDP-glucose dehydrogena 92.0 0.12 4.2E-06 49.8 4.4 38 31-68 5-42 (446)
398 3k6j_A Protein F01G10.3, confi 92.0 0.094 3.2E-06 50.7 3.6 37 31-67 51-87 (460)
399 3c4a_A Probable tryptophan hyd 92.0 0.065 2.2E-06 50.7 2.5 34 203-236 1-36 (381)
400 3k7m_X 6-hydroxy-L-nicotine ox 91.9 0.067 2.3E-06 51.5 2.6 32 204-235 3-34 (431)
401 2ew2_A 2-dehydropantoate 2-red 91.9 0.12 4.1E-06 47.4 4.1 33 35-67 4-36 (316)
402 1y56_B Sarcosine oxidase; dehy 91.8 0.069 2.4E-06 50.4 2.5 33 203-235 6-38 (382)
403 3pdu_A 3-hydroxyisobutyrate de 91.8 0.13 4.4E-06 46.6 4.2 33 35-67 2-34 (287)
404 1c0p_A D-amino acid oxidase; a 91.8 0.09 3.1E-06 49.3 3.2 33 203-235 7-39 (363)
405 1ks9_A KPA reductase;, 2-dehyd 91.7 0.13 4.4E-06 46.5 4.1 32 36-67 2-33 (291)
406 2y0c_A BCEC, UDP-glucose dehyd 91.7 0.13 4.5E-06 50.3 4.3 36 32-67 6-41 (478)
407 2b9w_A Putative aminooxidase; 91.7 0.085 2.9E-06 50.6 3.0 34 202-235 6-40 (424)
408 1zej_A HBD-9, 3-hydroxyacyl-CO 91.6 0.13 4.6E-06 46.6 4.0 36 31-67 9-44 (293)
409 3ghy_A Ketopantoate reductase 91.6 0.19 6.5E-06 46.6 5.2 32 35-66 4-35 (335)
410 3gg2_A Sugar dehydrogenase, UD 91.6 0.13 4.5E-06 49.8 4.2 32 36-67 4-35 (450)
411 2a9f_A Putative malic enzyme ( 91.6 0.15 5E-06 47.9 4.3 36 32-67 186-222 (398)
412 4gde_A UDP-galactopyranose mut 91.6 0.089 3E-06 51.9 3.1 33 203-235 11-44 (513)
413 2vvm_A Monoamine oxidase N; FA 91.6 0.2 6.8E-06 49.2 5.6 56 108-170 255-311 (495)
414 3vtf_A UDP-glucose 6-dehydroge 91.6 0.13 4.3E-06 49.5 3.9 37 31-67 18-54 (444)
415 3l6d_A Putative oxidoreductase 91.5 0.15 5.3E-06 46.6 4.4 35 33-67 8-42 (306)
416 3lk7_A UDP-N-acetylmuramoylala 91.4 0.13 4.3E-06 50.0 3.9 34 34-67 9-42 (451)
417 3ius_A Uncharacterized conserv 91.3 0.14 4.9E-06 46.0 4.0 35 33-67 4-38 (286)
418 3dje_A Fructosyl amine: oxygen 91.3 0.11 3.6E-06 50.3 3.2 33 203-235 7-40 (438)
419 3k96_A Glycerol-3-phosphate de 91.3 0.2 6.8E-06 46.9 5.0 34 34-67 29-62 (356)
420 2e1m_A L-glutamate oxidase; L- 91.3 0.095 3.3E-06 49.4 2.8 34 201-234 43-76 (376)
421 3nks_A Protoporphyrinogen oxid 91.2 0.086 3E-06 51.5 2.5 33 203-235 3-37 (477)
422 3dtt_A NADP oxidoreductase; st 91.2 0.19 6.4E-06 44.3 4.5 37 31-67 16-52 (245)
423 3ojo_A CAP5O; rossmann fold, c 91.1 0.12 4.1E-06 49.6 3.4 36 32-67 9-44 (431)
424 3i83_A 2-dehydropantoate 2-red 91.1 0.18 6.2E-06 46.4 4.5 33 203-235 3-35 (320)
425 4huj_A Uncharacterized protein 91.1 0.13 4.5E-06 44.5 3.3 34 34-67 23-57 (220)
426 3oj0_A Glutr, glutamyl-tRNA re 91.1 0.11 3.6E-06 41.6 2.5 36 32-67 19-54 (144)
427 2p4q_A 6-phosphogluconate dehy 91.1 0.23 8E-06 48.7 5.4 38 30-67 6-43 (497)
428 3fwz_A Inner membrane protein 91.1 0.16 5.4E-06 40.4 3.5 34 202-235 7-40 (140)
429 3g79_A NDP-N-acetyl-D-galactos 91.1 0.17 5.8E-06 49.3 4.4 37 32-68 16-54 (478)
430 1vl6_A Malate oxidoreductase; 91.0 0.18 6.3E-06 47.1 4.4 35 32-66 190-225 (388)
431 3nyc_A D-arginine dehydrogenas 91.0 0.093 3.2E-06 49.4 2.5 33 202-235 9-41 (381)
432 3l9w_A Glutathione-regulated p 91.0 0.25 8.7E-06 47.2 5.4 32 36-67 6-37 (413)
433 1jw9_B Molybdopterin biosynthe 90.9 0.17 5.7E-06 44.8 3.9 37 31-67 28-65 (249)
434 2jae_A L-amino acid oxidase; o 90.9 0.11 3.8E-06 50.9 3.0 34 202-235 11-44 (489)
435 2ewd_A Lactate dehydrogenase,; 90.8 0.18 6.1E-06 46.4 4.1 33 35-67 5-38 (317)
436 2bcg_G Secretory pathway GDP d 90.7 0.1 3.5E-06 50.7 2.5 33 203-235 12-44 (453)
437 1yj8_A Glycerol-3-phosphate de 90.7 0.21 7.1E-06 47.2 4.5 35 34-68 21-62 (375)
438 3ius_A Uncharacterized conserv 90.6 0.29 9.9E-06 44.0 5.2 33 203-235 6-38 (286)
439 2bi7_A UDP-galactopyranose mut 90.5 0.14 4.8E-06 48.6 3.2 33 203-235 4-36 (384)
440 3g3e_A D-amino-acid oxidase; F 90.5 0.12 3.9E-06 48.3 2.5 32 204-235 2-39 (351)
441 3g0o_A 3-hydroxyisobutyrate de 90.4 0.21 7.2E-06 45.6 4.2 33 35-67 8-40 (303)
442 1zcj_A Peroxisomal bifunctiona 90.4 0.16 5.6E-06 49.4 3.7 35 33-67 36-70 (463)
443 1s3e_A Amine oxidase [flavin-c 90.4 0.11 3.7E-06 51.5 2.4 33 203-235 5-37 (520)
444 1rsg_A FMS1 protein; FAD bindi 90.4 0.11 3.9E-06 51.3 2.6 34 202-235 8-42 (516)
445 3ic5_A Putative saccharopine d 90.4 0.11 3.7E-06 39.6 1.9 34 202-235 5-39 (118)
446 4e21_A 6-phosphogluconate dehy 90.3 0.22 7.4E-06 46.7 4.2 34 34-67 22-55 (358)
447 2hjr_A Malate dehydrogenase; m 90.3 0.24 8.2E-06 45.8 4.5 33 35-67 15-48 (328)
448 3llv_A Exopolyphosphatase-rela 90.3 0.14 4.8E-06 40.6 2.6 34 202-235 6-39 (141)
449 3c4n_A Uncharacterized protein 90.2 0.12 4.2E-06 49.3 2.6 33 203-235 37-71 (405)
450 2qcu_A Aerobic glycerol-3-phos 90.2 0.12 4.1E-06 51.0 2.5 33 203-235 4-36 (501)
451 3pid_A UDP-glucose 6-dehydroge 90.2 0.2 6.8E-06 48.1 3.9 37 30-67 32-68 (432)
452 4ezb_A Uncharacterized conserv 90.2 0.2 6.7E-06 46.1 3.8 35 33-67 23-58 (317)
453 3ps9_A TRNA 5-methylaminomethy 90.1 0.17 5.7E-06 52.0 3.6 34 202-235 272-305 (676)
454 3pef_A 6-phosphogluconate dehy 90.1 0.21 7.3E-06 45.1 3.9 32 36-67 3-34 (287)
455 3da1_A Glycerol-3-phosphate de 90.1 0.16 5.6E-06 50.8 3.4 33 203-235 19-51 (561)
456 3gpi_A NAD-dependent epimerase 90.1 0.39 1.3E-05 43.1 5.7 33 35-67 4-36 (286)
457 3i6d_A Protoporphyrinogen oxid 90.1 0.075 2.5E-06 51.7 0.9 33 203-235 6-44 (470)
458 3mog_A Probable 3-hydroxybutyr 90.1 0.32 1.1E-05 47.5 5.4 34 34-67 5-38 (483)
459 2aqj_A Tryptophan halogenase, 90.0 0.17 5.7E-06 50.4 3.4 34 202-235 5-41 (538)
460 2h78_A Hibadh, 3-hydroxyisobut 90.0 0.19 6.5E-06 45.8 3.5 34 34-67 3-36 (302)
461 1lss_A TRK system potassium up 90.0 0.16 5.4E-06 40.0 2.6 33 203-235 5-37 (140)
462 3pvc_A TRNA 5-methylaminomethy 90.0 0.16 5.6E-06 52.2 3.4 34 202-235 264-297 (689)
463 2ivd_A PPO, PPOX, protoporphyr 90.0 0.13 4.5E-06 50.2 2.6 35 201-235 15-49 (478)
464 2pv7_A T-protein [includes: ch 90.0 0.34 1.2E-05 44.1 5.2 34 34-67 21-55 (298)
465 2hmt_A YUAA protein; RCK, KTN, 89.9 0.22 7.5E-06 39.4 3.5 35 201-235 5-39 (144)
466 1ur5_A Malate dehydrogenase; o 89.9 0.26 9E-06 45.1 4.4 33 35-67 3-36 (309)
467 3gt0_A Pyrroline-5-carboxylate 89.9 0.34 1.1E-05 42.7 5.0 33 35-67 3-39 (247)
468 4g65_A TRK system potassium up 89.9 0.12 4.1E-06 50.3 2.1 32 36-67 5-36 (461)
469 2e4g_A Tryptophan halogenase; 89.8 0.19 6.6E-06 50.1 3.7 35 201-235 24-61 (550)
470 3fpz_A Thiazole biosynthetic e 89.8 0.13 4.4E-06 47.5 2.2 34 202-235 65-100 (326)
471 1x13_A NAD(P) transhydrogenase 89.7 0.21 7.3E-06 47.5 3.8 35 33-67 171-205 (401)
472 2yg5_A Putrescine oxidase; oxi 89.7 0.15 5.2E-06 49.3 2.8 33 203-235 6-38 (453)
473 3eag_A UDP-N-acetylmuramate:L- 89.7 0.26 9E-06 45.5 4.3 34 34-67 4-38 (326)
474 2r0c_A REBC; flavin adenine di 89.7 0.15 5.3E-06 50.8 2.8 34 203-236 27-60 (549)
475 3ego_A Probable 2-dehydropanto 89.7 0.25 8.5E-06 45.2 4.0 32 35-67 3-34 (307)
476 3hdq_A UDP-galactopyranose mut 89.7 0.16 5.5E-06 48.3 2.8 34 202-235 29-62 (397)
477 4gbj_A 6-phosphogluconate dehy 89.6 0.17 5.9E-06 46.0 2.9 34 34-67 5-38 (297)
478 2rgh_A Alpha-glycerophosphate 89.6 0.14 4.9E-06 51.3 2.5 33 203-235 33-65 (571)
479 3axb_A Putative oxidoreductase 89.5 0.15 5E-06 49.4 2.5 32 202-233 23-55 (448)
480 1sez_A Protoporphyrinogen oxid 89.5 0.17 5.8E-06 49.8 2.9 35 202-236 13-47 (504)
481 2i6t_A Ubiquitin-conjugating e 89.4 0.28 9.5E-06 44.7 4.0 36 32-67 12-49 (303)
482 1t2d_A LDH-P, L-lactate dehydr 89.3 0.31 1.1E-05 44.8 4.4 33 35-67 5-38 (322)
483 1bg6_A N-(1-D-carboxylethyl)-L 89.3 0.29 9.8E-06 45.7 4.2 33 35-67 5-37 (359)
484 2v6b_A L-LDH, L-lactate dehydr 89.3 0.27 9.4E-06 44.9 4.0 32 36-67 2-35 (304)
485 2uyy_A N-PAC protein; long-cha 89.2 0.33 1.1E-05 44.5 4.6 33 35-67 31-63 (316)
486 2o3j_A UDP-glucose 6-dehydroge 89.2 0.17 5.7E-06 49.6 2.6 33 35-67 10-44 (481)
487 1l7d_A Nicotinamide nucleotide 89.2 0.31 1.1E-05 46.1 4.4 35 33-67 171-205 (384)
488 3h8v_A Ubiquitin-like modifier 89.1 0.3 1E-05 44.1 4.0 38 30-67 32-70 (292)
489 1i8t_A UDP-galactopyranose mut 89.0 0.2 6.8E-06 47.2 2.9 32 204-235 3-34 (367)
490 3rui_A Ubiquitin-like modifier 89.0 0.32 1.1E-05 44.9 4.1 37 31-67 31-68 (340)
491 3e8x_A Putative NAD-dependent 89.0 0.35 1.2E-05 42.1 4.3 36 32-67 19-55 (236)
492 3hwr_A 2-dehydropantoate 2-red 89.0 0.31 1.1E-05 44.8 4.1 30 36-66 21-50 (318)
493 3ego_A Probable 2-dehydropanto 88.9 0.22 7.6E-06 45.5 3.1 32 203-235 3-34 (307)
494 3phh_A Shikimate dehydrogenase 88.9 0.35 1.2E-05 43.1 4.3 34 34-67 118-151 (269)
495 2weu_A Tryptophan 5-halogenase 88.8 0.16 5.6E-06 50.1 2.3 33 203-235 3-38 (511)
496 1hyh_A L-hicdh, L-2-hydroxyiso 88.8 0.32 1.1E-05 44.5 4.0 33 35-67 2-36 (309)
497 1jay_A Coenzyme F420H2:NADP+ o 88.7 0.32 1.1E-05 41.6 3.9 32 36-67 2-34 (212)
498 2cvz_A Dehydrogenase, 3-hydrox 88.7 0.33 1.1E-05 43.8 4.1 32 35-67 2-33 (289)
499 1pjc_A Protein (L-alanine dehy 88.7 0.32 1.1E-05 45.6 4.2 35 33-67 166-200 (361)
500 3c85_A Putative glutathione-re 88.7 0.24 8.2E-06 41.3 2.9 35 201-235 38-73 (183)
No 1
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=100.00 E-value=5.4e-41 Score=322.76 Aligned_cols=342 Identities=21% Similarity=0.340 Sum_probs=266.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
.+||+|||||++|+++|..|++.|++++|+|+.+.+||.|.. .|+...+..+.....++..+.+.....++...++..+
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH-AWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAY 81 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG-SCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC-CCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHH
Confidence 378999999999999999999999999999999999999986 4777777777777777777766666678889999999
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
+.+++++++++++++++|++++..+ +.|. |++.+ .+++||+||+|||.++.|..|.+||...+.+..++++
T Consensus 82 l~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~v~~~~------g~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~ 153 (357)
T 4a9w_A 82 LAQYEQKYALPVLRPIRVQRVSHFG--ERLRVVARDG------RQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSA 153 (357)
T ss_dssp HHHHHHHTTCCEECSCCEEEEEEET--TEEEEEETTS------CEEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGG
T ss_pred HHHHHHHcCCEEEcCCEEEEEEECC--CcEEEEEeCC------CEEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEec
Confidence 9999999999999999999999887 7788 77665 3799999999999888888899999888888889998
Q ss_pred CCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHH
Q 013435 193 SYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMS 272 (443)
Q Consensus 193 ~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (443)
.+.+.....+++|+|||+|.+|+|+|..|++.+ +|+++.|++..++|....+ ..+..++.+.+......
T Consensus 154 ~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--- 222 (357)
T 4a9w_A 154 HYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDG-------RVLFERATERWKAQQEG--- 222 (357)
T ss_dssp GCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCT-------HHHHTC--------------
T ss_pred cCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcC-------ccHHHHHHHHHhccccc---
Confidence 888887788999999999999999999999998 6999999965666655321 11111111111110000
Q ss_pred HHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecCCcEEeCCcEEEcCCcEEcccEEEEccCCCC
Q 013435 273 WLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRAIKRLTHHAAEFIDGSIENYDAIILATGYKS 352 (443)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~v~~~~g~~~~~D~vi~atG~~~ 352 (443)
.+. .. .........+.....+.+..+.+.....+.+++.+++.+.+|+++++|.||+|+|++|
T Consensus 223 -~~~----~~------------~~~~~~~~~~~~~~~~~~~~g~i~~~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 285 (357)
T 4a9w_A 223 -REP----DL------------PPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRP 285 (357)
T ss_dssp ----------------------------CBCCCHHHHHHHHTTCCCEECCCSEEETTEEECTTSCEEECSEEEECCCBCC
T ss_pred -cCC----Cc------------ccccccCcccChhHHHHHhcCceEEecCcceEeCCeeEECCCCEecCCEEEECCCcCC
Confidence 000 00 0000011223344455566677766666889999999999999999999999999999
Q ss_pred CCCCCccCcCcCccCCCCcCCCCCC--CCcCCCceEEEe--eccC----CcccchHHHHHHHHHHHHhhHH
Q 013435 353 NVPYWLKDTEMFSEKDGFPRMEFPN--GWKGAHGLYAVG--FNKR----GLLGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 353 ~~~~~~~~~~l~~~~~G~i~~~~~~--~~~~~~~ifaiG--d~~~----~~~~a~~~a~~~a~~i~~~l~~ 415 (443)
++ .++...++. +++|++.+| ++ ++++.|+|||+| |++. ....|..+|+.+|++|...+..
T Consensus 286 ~~-~~l~~~gl~-~~~G~i~vd-~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 286 AL-SHLKGLDLV-TPQGQVEVD-GSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp CC-GGGTTTTCB-CTTSCBCBC-TTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred CC-cccCccccc-CCCCCcccc-CCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHHh
Confidence 98 677777887 688999999 55 889999999999 5553 2447889999999999999865
No 2
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=100.00 E-value=4.4e-40 Score=326.51 Aligned_cols=306 Identities=24% Similarity=0.383 Sum_probs=243.3
Q ss_pred CCeEEECCCHHHHHHHHHHHH---cCCC---EEEEecCCCCCcccccCC---------------CCceeeecCCccccCC
Q 013435 35 PGPVIVGAGPSGLATAACLTE---KGVP---SLILERANCIASLWQLKT---------------YDRLRLHLPKQFCQLP 93 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~---~g~~---v~iie~~~~~gg~w~~~~---------------~~~~~~~~~~~~~~~~ 93 (443)
+||+|||||++|+++|..|++ .|.+ |+|||+.+.+||.|.... |..+..+.+...+.++
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 689999999999999999999 9999 999999999999998632 3334444444444444
Q ss_pred CCCCCC----CCCCCCCHHHHHHHHHHHHHHcCCc--cccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEcc
Q 013435 94 LMPFPS----NFPTYPTKQQFLTYLETYTNHFGLD--PVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVAT 167 (443)
Q Consensus 94 ~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~--v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAt 167 (443)
.++++. +.+.+++..++.+|+.++++++++. ++++++|+.++..++.+.|.|++.++..++..++.||+||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 444322 1256778999999999999999988 7889999999988744589999876444444689999999999
Q ss_pred CCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCC
Q 013435 168 GENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRS 247 (443)
Q Consensus 168 G~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~ 247 (443)
|.++.|+.|.+||.+.+.+.++|++.+.+.....+++|+|||+|.+|+|+|..|++.|.+|+++.|++. +++..
T Consensus 163 G~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~-~~~~~----- 236 (464)
T 2xve_A 163 GHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA-PMGYK----- 236 (464)
T ss_dssp CSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC-CCCCC-----
T ss_pred CCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC-CCCCC-----
Confidence 998899999999998888888999888877777899999999999999999999999999999998873 11110
Q ss_pred ccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecCCcEEe
Q 013435 248 TFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRAIKRLT 327 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~ 327 (443)
+ ..+|+++..|+++.
T Consensus 237 ----------------------------------------------------------------~-~~~V~~~~~V~~i~ 251 (464)
T 2xve_A 237 ----------------------------------------------------------------W-PENWDERPNLVRVD 251 (464)
T ss_dssp ----------------------------------------------------------------C-CTTEEECSCEEEEC
T ss_pred ----------------------------------------------------------------C-CCceEEcCCeEEEe
Confidence 0 13566665678888
Q ss_pred CCcEEEcCCcEEcccEEEEccCCCCCCCCCccC-cCcCccCCCCcCCC--CCCCCcCCCceEEEeeccCCcc--cchHHH
Q 013435 328 HHAAEFIDGSIENYDAIILATGYKSNVPYWLKD-TEMFSEKDGFPRME--FPNGWKGAHGLYAVGFNKRGLL--GASIDA 402 (443)
Q Consensus 328 ~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~-~~l~~~~~G~i~~~--~~~~~~~~~~ifaiGd~~~~~~--~a~~~a 402 (443)
++++.+.+|+++++|.||+|||++|++ .|+.+ .++..+++|++ ++ .....++.|+||++||+..... .|..||
T Consensus 252 ~~~V~~~dG~~i~~D~Vi~atG~~p~~-~~l~~~~gl~~~~~~~v-~~~~~~~~~t~~p~i~aiGd~~~~~~~~~a~~qa 329 (464)
T 2xve_A 252 TENAYFADGSSEKVDAIILCTGYIHHF-PFLNDDLRLVTNNRLWP-LNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQA 329 (464)
T ss_dssp SSEEEETTSCEEECSEEEECCCBCCCC-TTBCTTTCCCCCSSSCC-SSEETTTEESSSTTEEECSCSCCSSCHHHHHHHH
T ss_pred CCEEEECCCCEEeCCEEEECCCCCCCC-CCcCcccccccCCCccc-ccccceEecCCCCCEEEEeCcccccchHHHHHHH
Confidence 888999999999999999999999998 55554 46766555465 33 1224578999999999876432 567899
Q ss_pred HHHHHHHHHhh
Q 013435 403 RRISEDIEHQW 413 (443)
Q Consensus 403 ~~~a~~i~~~l 413 (443)
+.+|+++.+.+
T Consensus 330 ~~~a~~l~G~~ 340 (464)
T 2xve_A 330 WYARDVIMGRL 340 (464)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHHcCCC
Confidence 99999998764
No 3
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=100.00 E-value=2e-39 Score=326.30 Aligned_cols=363 Identities=21% Similarity=0.289 Sum_probs=266.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHH-HcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCC----CCCCCCCCCCH
Q 013435 33 MVPGPVIVGAGPSGLATAACLT-EKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMP----FPSNFPTYPTK 107 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~-~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 107 (443)
..+||+|||||++|+++|..|+ +.|.+++|+|+++.+||+|..+.|++..++.+...+.+...+ .+.+...++..
T Consensus 7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~ 86 (540)
T 3gwf_A 7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQ 86 (540)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCH
Confidence 3579999999999999999999 889999999999999999999999999988877766655331 11233456788
Q ss_pred HHHHHHHHHHHHHcCC--ccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCc
Q 013435 108 QQFLTYLETYTNHFGL--DPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFR 185 (443)
Q Consensus 108 ~~~~~~l~~~~~~~~~--~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~ 185 (443)
.++.+|+.+.++++++ .++++++|++++..++...|.|++.++ .+++||+||+|||.++.|..|++||++.+.
T Consensus 87 ~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G-----~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~ 161 (540)
T 3gwf_A 87 PEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG-----EVYRAKYVVNAVGLLSAINFPNLPGLDTFE 161 (540)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTS-----CEEEEEEEEECCCSCCSBCCCCCTTGGGCC
T ss_pred HHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCC-----CEEEeCEEEECCcccccCCCCCCCCccccC
Confidence 9999999999999998 688999999999987556899998875 579999999999998899999999999888
Q ss_pred ccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhH---
Q 013435 186 GPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVR--- 262 (443)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~--- 262 (443)
+..+|++.+.+.....+++|+|||+|.+|+|+|..|+..+.+||++.|++.+++|......+.. ....+...++..
T Consensus 162 g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~-~~~~l~~~~~~~~~~ 240 (540)
T 3gwf_A 162 GETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPE-QIAEIKADYDRIWER 240 (540)
T ss_dssp SEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHH-HHHHHHHTHHHHHHH
T ss_pred CCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHH-HHHHHHhccHHHHHH
Confidence 9999999988877788999999999999999999999999999999999988888765422110 000011000000
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHHhcCccccCCCCCC
Q 013435 263 ------------------------------------------------------LVDQFLLLMSWLMLGDTSQFGLIRPK 288 (443)
Q Consensus 263 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (443)
............+.. .+..|.
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~dp~ 315 (540)
T 3gwf_A 241 AKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAE-----IIEDPE 315 (540)
T ss_dssp HHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHH-----HCCSHH
T ss_pred HHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH-----HcCCHH
Confidence 000000000110000 011111
Q ss_pred ----CCCccccccCCCcccccccchhhhcCCCeEEe---cC-CcEEeCCcEEEcCCcEEcccEEEEccCCCCCCCCCccC
Q 013435 289 ----LGPLELKNVSGKTPVLDVGTLAKIRSGNIKVC---RA-IKRLTHHAAEFIDGSIENYDAIILATGYKSNVPYWLKD 360 (443)
Q Consensus 289 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~-v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~ 360 (443)
+.+. ...++++.++.++++.+++++|+++ .. |++++++||.+.||+++++|+||+|||+.+++ .++..
T Consensus 316 ~~~~l~P~---~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~gv~~~dG~~~~~DvIV~ATGf~~~~-~~~~~ 391 (540)
T 3gwf_A 316 TARKLMPK---GLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGFDAVD-GNYRR 391 (540)
T ss_dssp HHHHHCCC---SCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSEEEETTCCEEECSEEEECCCBSCSS-HHHHT
T ss_pred HHHhCCCC---CCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCeEEcCCCCEEECCEEEECCccCccc-cCcCc
Confidence 1111 3456778889999999999999999 44 99999999999999999999999999999986 23333
Q ss_pred cCcCccCCCCc---------CCCCCCCCcCCCceEEE-eeccCC---cccchHHHHHHHHHHHH
Q 013435 361 TEMFSEKDGFP---------RMEFPNGWKGAHGLYAV-GFNKRG---LLGASIDARRISEDIEH 411 (443)
Q Consensus 361 ~~l~~~~~G~i---------~~~~~~~~~~~~~ifai-Gd~~~~---~~~a~~~a~~~a~~i~~ 411 (443)
.++.- .+|.. ..-........||+|++ |+.+.. +..+..|+..+++.|..
T Consensus 392 ~~i~g-~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~~i~~ 454 (540)
T 3gwf_A 392 IEIRG-RDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIGY 454 (540)
T ss_dssp SEEEC-GGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEC-CCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 33211 22222 11112234578999999 876541 11334566666655543
No 4
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=100.00 E-value=3.6e-38 Score=317.82 Aligned_cols=366 Identities=22% Similarity=0.307 Sum_probs=262.3
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCC----CCCCCCCCCCH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMP----FPSNFPTYPTK 107 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 107 (443)
...+||+|||||++|+++|..|.+.|++++|+|+.+.+||+|..+.|++..++.+...+.+...+ .+.+...++..
T Consensus 19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~ 98 (549)
T 4ap3_A 19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQ 98 (549)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBH
T ss_pred CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCH
Confidence 44679999999999999999999999999999999999999999999999999887776665432 12333457789
Q ss_pred HHHHHHHHHHHHHcCC--ccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCc
Q 013435 108 QQFLTYLETYTNHFGL--DPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFR 185 (443)
Q Consensus 108 ~~~~~~l~~~~~~~~~--~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~ 185 (443)
.++.+|+.+.++++++ .++++++|++++.+++...|.|++.++ .+++||+||+|||..+.|..|++||.+.+.
T Consensus 99 ~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G-----~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~ 173 (549)
T 4ap3_A 99 PEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRG-----DEVSARFLVVAAGPLSNANTPAFDGLDRFT 173 (549)
T ss_dssp HHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTC-----CEEEEEEEEECCCSEEECCCCCCTTGGGCC
T ss_pred HHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCC-----CEEEeCEEEECcCCCCCCCCCCCCCcccCC
Confidence 9999999999999998 678999999999887656899998875 579999999999988899999999999888
Q ss_pred ccEeecCCCC-CCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHH-
Q 013435 186 GPIFHSSSYK-TGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRL- 263 (443)
Q Consensus 186 ~~~~~~~~~~-~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~- 263 (443)
+..+|+..+. +.....+++|+|||+|.+|+|+|..|++.+.+||++.|++.+++|......+... ...+...++...
T Consensus 174 g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~-~~~l~~~~~~~~~ 252 (549)
T 4ap3_A 174 GDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDAT-RAEQKANYAERRR 252 (549)
T ss_dssp SEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHH-HHHHHHTHHHHHH
T ss_pred CceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHH-HHHHHhccHHHHH
Confidence 9999999888 5677789999999999999999999999999999999999888887654221100 000000001000
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHhcCccccCCCCCCC
Q 013435 264 ------------------------------------------------------VDQFLLLMSWLMLGDTSQFGLIRPKL 289 (443)
Q Consensus 264 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (443)
.......+...+.. .+..|.+
T Consensus 253 ~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~d~~~ 327 (549)
T 4ap3_A 253 LSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRA-----VVDDPAV 327 (549)
T ss_dssp HHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHH-----HCSCHHH
T ss_pred HHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHH-----HcCCHHH
Confidence 00000000000000 0011111
Q ss_pred CCccc---cccCCCcccccccchhhhcCCCeEEe---cC-CcEEeCCcEEEcCCcEEcccEEEEccCCCCCCCCCccCcC
Q 013435 290 GPLEL---KNVSGKTPVLDVGTLAKIRSGNIKVC---RA-IKRLTHHAAEFIDGSIENYDAIILATGYKSNVPYWLKDTE 362 (443)
Q Consensus 290 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~v~---~~-v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~ 362 (443)
..... ....++++.++.++++.+++++|+++ .. |++++++||.+.+| ++++|+||+|||+.+++ .++...+
T Consensus 328 ~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~gv~~~dG-~~~~D~iI~ATGf~~~~-~~~~~~~ 405 (549)
T 4ap3_A 328 AELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETGIVTTGA-HYDLDMIVLATGFDAMT-GSLDKLE 405 (549)
T ss_dssp HHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCEEESS-TTGGGSE
T ss_pred HHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCCcEEeCCC-ceecCEEEECCcccccc-cccCcee
Confidence 10001 12345667788999999999999999 55 99999999999999 99999999999999986 3444333
Q ss_pred cCccCCCCcCC---------CCCCCCcCCCceEEE-eeccCC-----cccchHHHHHHHHHHHH
Q 013435 363 MFSEKDGFPRM---------EFPNGWKGAHGLYAV-GFNKRG-----LLGASIDARRISEDIEH 411 (443)
Q Consensus 363 l~~~~~G~i~~---------~~~~~~~~~~~ifai-Gd~~~~-----~~~a~~~a~~~a~~i~~ 411 (443)
+.- .+|.... =........||+|++ |..++. +..+..|+..+++.|..
T Consensus 406 i~g-~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i~~~i~~ 468 (549)
T 4ap3_A 406 IVG-RGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIAY 468 (549)
T ss_dssp EEC-GGGCBHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred EEC-CCCcCHHHhhccchhhccccccCCCCcEEEEeCCCCCCcCccHHHHHHHHHHHHHHHHHH
Confidence 321 2232211 101223478999997 554332 11334566666655543
No 5
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=100.00 E-value=2.3e-38 Score=318.92 Aligned_cols=366 Identities=20% Similarity=0.271 Sum_probs=259.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCC----CCCCCCCCCH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF----PSNFPTYPTK 107 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 107 (443)
...+||+|||||++|+++|..|.+.|++++|+|+++.+||+|..+.|++..++.+...+.+.+.+. ..+...++..
T Consensus 7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~ 86 (545)
T 3uox_A 7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQ 86 (545)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBH
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCH
Confidence 345799999999999999999999999999999999999999999999999888766555443221 2233456789
Q ss_pred HHHHHHHHHHHHHcCC--ccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCc
Q 013435 108 QQFLTYLETYTNHFGL--DPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFR 185 (443)
Q Consensus 108 ~~~~~~l~~~~~~~~~--~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~ 185 (443)
.++..|+.+.++++++ .++++++|++++.+++...|.|++.++ .+++||+||+|||..+.|..|++||.+.+.
T Consensus 87 ~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G-----~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~ 161 (545)
T 3uox_A 87 PEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNE-----EVVTCRFLISATGPLSASRMPDIKGIDSFK 161 (545)
T ss_dssp HHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTT-----EEEEEEEEEECCCSCBC---CCCTTGGGCC
T ss_pred HHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCC-----CEEEeCEEEECcCCCCCCcCCCCCCccccC
Confidence 9999999999999998 578899999999887557899999876 689999999999998899999999999888
Q ss_pred ccEeecCCCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhh
Q 013435 186 GPIFHSSSYKTG-------ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKW 258 (443)
Q Consensus 186 ~~~~~~~~~~~~-------~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~ 258 (443)
+..+|+..+... ....+++|+|||+|.+|+|+|..|++.+.+||++.|++.+++|......+.... ..+...
T Consensus 162 g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~-~~l~~~ 240 (545)
T 3uox_A 162 GESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKM-DSLRNR 240 (545)
T ss_dssp SEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHH-HHHHHT
T ss_pred CCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHH-HHHHhh
Confidence 999999988765 667889999999999999999999999999999999998888875432211100 000000
Q ss_pred chh--------------------------------------------------------HHHHHHHHHHHHHHhcCcccc
Q 013435 259 FPV--------------------------------------------------------RLVDQFLLLMSWLMLGDTSQF 282 (443)
Q Consensus 259 ~~~--------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 282 (443)
++. ...+.....+...+..
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 315 (545)
T 3uox_A 241 YPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQ----- 315 (545)
T ss_dssp HHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHH-----
Confidence 000 0000000011111100
Q ss_pred CCCCCCCCCccc---cccCCCcccccccchhhhcCCCeEEe---cC-CcEEeCCcEEEcCCcEEcccEEEEccCCCCCCC
Q 013435 283 GLIRPKLGPLEL---KNVSGKTPVLDVGTLAKIRSGNIKVC---RA-IKRLTHHAAEFIDGSIENYDAIILATGYKSNVP 355 (443)
Q Consensus 283 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~v~---~~-v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~ 355 (443)
.+..|.+..... ....++++.++.++++.+++++|+++ .. |+++++++|.+.+| ++++|+||+||||.+++
T Consensus 316 ~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~gv~~~dG-~~~~D~IV~ATGf~~~~- 393 (545)
T 3uox_A 316 RVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPEGIKTADA-AYDLDVIIYATGFDAVT- 393 (545)
T ss_dssp HCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCCBSSS-
T ss_pred HcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccCeEEeCCC-eeecCEEEECCcccccc-
Confidence 011111111111 12345667789999999999999999 44 99999999999999 99999999999999876
Q ss_pred CCccCcCcCccCCCCcCCCC---------CCCCcCCCceEEEeecc-CC-----cccchHHHHHHHHHHHH
Q 013435 356 YWLKDTEMFSEKDGFPRMEF---------PNGWKGAHGLYAVGFNK-RG-----LLGASIDARRISEDIEH 411 (443)
Q Consensus 356 ~~~~~~~l~~~~~G~i~~~~---------~~~~~~~~~ifaiGd~~-~~-----~~~a~~~a~~~a~~i~~ 411 (443)
.++....+.- .+|....+. .......||+|++.-.+ +. +..+..|+..+++.|..
T Consensus 394 ~~~~~~~i~g-~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~~~i~~ 463 (545)
T 3uox_A 394 GSLDRIDIRG-KDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCGGLQAEWVLRMISY 463 (545)
T ss_dssp CSCTTSEEEC-GGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCceEEC-CCCccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 4443333311 234322210 12234779999885433 21 11334566666665543
No 6
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=100.00 E-value=4.8e-37 Score=304.08 Aligned_cols=301 Identities=21% Similarity=0.296 Sum_probs=232.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCC--CEEEEecCCCCCcccccCCCCc------------------------------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGV--PSLILERANCIASLWQLKTYDR------------------------------ 80 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~------------------------------ 80 (443)
+.+||+|||||++|+++|..|++.|. +|+|||+.+.+||.|.......
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~ 84 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 84 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence 45799999999999999999999999 9999999999999997643211
Q ss_pred ---eeeecCCccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCc-EE
Q 013435 81 ---LRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQE-ET 156 (443)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~-~~ 156 (443)
+..+.+...+.++..+++.....+++..++.+|+.+++++++..++++++|++++..+ +.|.|++.+...++ ..
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~--~~~~V~~~~~~~G~~~~ 162 (447)
T 2gv8_A 85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD--GSWVVTYKGTKAGSPIS 162 (447)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET--TEEEEEEEESSTTCCEE
T ss_pred hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCC--CeEEEEEeecCCCCeeE
Confidence 1111122223344455555556778899999999999998887888999999998876 77889887622223 34
Q ss_pred EEEeCEEEEccCCCCCCccCCCCCCCCC----cccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCc-cEEE
Q 013435 157 VYLCQWLIVATGENAEEVVPYIEGMDGF----RGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNAR-PSLV 231 (443)
Q Consensus 157 ~i~a~~vIiAtG~~~~p~~p~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~-Vt~i 231 (443)
++.||+||+|||.++.|+.|.+||.+.+ .+.++|+..+.+...+.+++|+|||+|.+|+|+|..|+..+.+ |+++
T Consensus 163 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~ 242 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQS 242 (447)
T ss_dssp EEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEE
T ss_pred EEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEEE
Confidence 7999999999999889999999997643 4567888888777777899999999999999999999999999 9999
Q ss_pred EecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhh
Q 013435 232 VRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAK 311 (443)
Q Consensus 232 ~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (443)
.|++..
T Consensus 243 ~r~~~~-------------------------------------------------------------------------- 248 (447)
T 2gv8_A 243 LLGGGD-------------------------------------------------------------------------- 248 (447)
T ss_dssp CTTCCS--------------------------------------------------------------------------
T ss_pred eCCCCc--------------------------------------------------------------------------
Confidence 887721
Q ss_pred hcCCCeEEecCCcEEe--CCcEEEcCCcE-EcccEEEEccCCCCCCCCC-----ccCc--CcCccCCCCcCCCCCCCC--
Q 013435 312 IRSGNIKVCRAIKRLT--HHAAEFIDGSI-ENYDAIILATGYKSNVPYW-----LKDT--EMFSEKDGFPRMEFPNGW-- 379 (443)
Q Consensus 312 ~~~~~v~v~~~v~~~~--~~~v~~~~g~~-~~~D~vi~atG~~~~~~~~-----~~~~--~l~~~~~G~i~~~~~~~~-- 379 (443)
+...+|.+...|+++. +.++.+.||+. +++|.||+|||++|++ .| +... ++. .++.+.++ .+..
T Consensus 249 l~~~~i~~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~~-~~l~~~~l~~~~~~i~--~~~~~~~~-~~~~v~ 324 (447)
T 2gv8_A 249 IQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSV-PFPSLAKLKSPETKLI--DDGSHVHN-VYQHIF 324 (447)
T ss_dssp CBCSSEEEECCEEEEETTTTEEEETTTEEECCCSEEEECCCBCCCC-CCHHHHSCCSTTTCCC--SSSSSCCS-EETTTE
T ss_pred CCCCCeEEecCeEEEecCCCEEEECCCCEeccCCEEEECCCCCcCC-CCCcccccccccCcee--cCCCcccc-cccccc
Confidence 1123555555567774 34689999987 7999999999999998 56 5543 332 34555555 2332
Q ss_pred -cCCCceEEEeeccCCcc--cchHHHHHHHHHHHHhh
Q 013435 380 -KGAHGLYAVGFNKRGLL--GASIDARRISEDIEHQW 413 (443)
Q Consensus 380 -~~~~~ifaiGd~~~~~~--~a~~~a~~~a~~i~~~l 413 (443)
++.|+||++||+..... .|..||+.+|+++.+.+
T Consensus 325 ~~~~p~l~~~G~~~~~~~~~~a~~qa~~~a~~~~g~~ 361 (447)
T 2gv8_A 325 YIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRL 361 (447)
T ss_dssp ETTCTTEEESSCCBSSCHHHHHHHHHHHHHHHHTTSS
T ss_pred cCCCCcEEEEeccccccCchHHHHHHHHHHHHHcCCC
Confidence 68899999999886532 56789999999998764
No 7
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=100.00 E-value=4.4e-37 Score=310.99 Aligned_cols=366 Identities=20% Similarity=0.296 Sum_probs=262.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCC----CCCCCCCCCHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPF----PSNFPTYPTKQQ 109 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 109 (443)
.+||+|||||++|+++|..|++.|++++|+|+.+.+||+|..+.|++..++.+...+.+.+.+. ..+...++...+
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 95 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE 95 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHH
Confidence 5799999999999999999999999999999999999999998999988877665554442220 112235678899
Q ss_pred HHHHHHHHHHHcCC--ccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCccc
Q 013435 110 FLTYLETYTNHFGL--DPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGP 187 (443)
Q Consensus 110 ~~~~l~~~~~~~~~--~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~ 187 (443)
+.+|+.+.++++++ .++++++|++++.+++...|.|++.++ .+++||+||+|+|.++.|..|++||++.+.+.
T Consensus 96 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G-----~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~ 170 (542)
T 1w4x_A 96 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHG-----DRIRARYLIMASGQLSVPQLPNFPGLKDFAGN 170 (542)
T ss_dssp HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTC-----CEEEEEEEEECCCSCCCCCCCCCTTGGGCCSE
T ss_pred HHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCC-----CEEEeCEEEECcCCCCCCCCCCCCCcccCCCc
Confidence 99999999998874 478899999999877556899988764 57999999999999889999999999888899
Q ss_pred EeecCCCC-CCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhH----
Q 013435 188 IFHSSSYK-TGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVR---- 262 (443)
Q Consensus 188 ~~~~~~~~-~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~---- 262 (443)
.+|+..+. +.....+|+|+|||+|.+|+|++..|+..+.+|+++.|++.+++|........ .....+.+.+|..
T Consensus 171 ~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~-~~~~~~~~~~p~l~~~~ 249 (542)
T 1w4x_A 171 LYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDP-EFLADLKKRYAEFREES 249 (542)
T ss_dssp EEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCH-HHHHHHHTTHHHHHHHH
T ss_pred eEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCH-HHHHHHHhhCHHHHHHH
Confidence 99998887 44567899999999999999999999999999999999998777754321110 0111111111100
Q ss_pred ---------------------------------------------------HHHHHHHHHHHHH---hcCccccCCCCCC
Q 013435 263 ---------------------------------------------------LVDQFLLLMSWLM---LGDTSQFGLIRPK 288 (443)
Q Consensus 263 ---------------------------------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~ 288 (443)
.......+....+ ..+........|.
T Consensus 250 ~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~ 329 (542)
T 1w4x_A 250 RNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPK 329 (542)
T ss_dssp HTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCC
T ss_pred HhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCC
Confidence 0000000000000 0111100001110
Q ss_pred CCCccccccCCCcccccccchhhhcCCCeEEe---cC-CcEEeCCcEEEcCCcEEcccEEEEccCCCCCCCCCccCcCcC
Q 013435 289 LGPLELKNVSGKTPVLDVGTLAKIRSGNIKVC---RA-IKRLTHHAAEFIDGSIENYDAIILATGYKSNVPYWLKDTEMF 364 (443)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~-v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~ 364 (443)
.....++++.+++++++.+++++|+++ .. |+++++++|.+.| +++++|+||+|||+.+++ .++...++.
T Consensus 330 -----~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~gv~~~d-~~~~~D~ii~atG~~~~~-~~~~~~~i~ 402 (542)
T 1w4x_A 330 -----GYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSE-REYELDSLVLATGFDALT-GALFKIDIR 402 (542)
T ss_dssp -----SSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSEEEESS-CEEECSEEEECCCCCCTT-HHHHTSEEE
T ss_pred -----CCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCeEEeCC-eEEecCEEEEcCCccccc-cCcCceeeE
Confidence 122456778889999999999999997 44 9999999999999 999999999999999976 344433332
Q ss_pred ccCCCCcCCC------CC---CCCcCCCceEEE-eeccCC----c-ccchHHHHHHHHHHHHhh
Q 013435 365 SEKDGFPRME------FP---NGWKGAHGLYAV-GFNKRG----L-LGASIDARRISEDIEHQW 413 (443)
Q Consensus 365 ~~~~G~i~~~------~~---~~~~~~~~ifai-Gd~~~~----~-~~a~~~a~~~a~~i~~~l 413 (443)
. .+|....+ .. ......||+|++ |+.+.. . ..+..|++.+|+.|....
T Consensus 403 g-~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~~~ 465 (542)
T 1w4x_A 403 G-VGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMF 465 (542)
T ss_dssp C-GGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 1 33444332 01 223467999998 998532 2 245678888888877654
No 8
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=7e-37 Score=291.77 Aligned_cols=311 Identities=20% Similarity=0.224 Sum_probs=228.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
.+||+|||||++|+++|..|++.|++++|+|+.+.+||.|... ++...+ +..+..+ .....++..+
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~~~------~~~~~~~-------~~~~~~~~~~ 70 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTAL-YPEKYI------YDVAGFP-------KVYAKDLVKG 70 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHT-CTTSEE------CCSTTCS-------SEEHHHHHHH
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeecc-CCCcee------eccCCCC-------CCCHHHHHHH
Confidence 4799999999999999999999999999999999999988642 222111 1111111 1246788889
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC-CCccCCCCCCCCCcccEeecC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA-EEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~-~p~~p~~~g~~~~~~~~~~~~ 192 (443)
+.+.+.++++.++++++|+.++..+ +.|.|.+.++ ..+.||+||+|||..+ .|..|.++|.+.+.+..++.+
T Consensus 71 l~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~ 143 (335)
T 2zbw_A 71 LVEQVAPFNPVYSLGERAETLEREG--DLFKVTTSQG-----NAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA 143 (335)
T ss_dssp HHHHHGGGCCEEEESCCEEEEEEET--TEEEEEETTS-----CEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESS
T ss_pred HHHHHHHcCCEEEeCCEEEEEEECC--CEEEEEECCC-----CEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEe
Confidence 9888888898888899999999876 5788877654 5799999999999643 577778888766544333332
Q ss_pred CCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHH
Q 013435 193 SYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMS 272 (443)
Q Consensus 193 ~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (443)
+.+.....+++|+|||+|.+|+|+|..|.+.|.+|+++.|++. +++.+. ..+.
T Consensus 144 -~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~-~~~~~~-------------------~~~~------ 196 (335)
T 2zbw_A 144 -VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ-FRAHEA-------------------SVKE------ 196 (335)
T ss_dssp -CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS-CCSCHH-------------------HHHH------
T ss_pred -cCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc-cCccHH-------------------HHHH------
Confidence 2233345689999999999999999999999999999999873 222110 0111
Q ss_pred HHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC----cEEEc---CC--cEEcc
Q 013435 273 WLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH----AAEFI---DG--SIENY 341 (443)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~----~v~~~---~g--~~~~~ 341 (443)
+.+.+++.+|+++.+ +.++..+ ++.+. +| +++++
T Consensus 197 -----------------------------------l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~ 241 (335)
T 2zbw_A 197 -----------------------------------LMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEV 241 (335)
T ss_dssp -----------------------------------HHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEEC
T ss_pred -----------------------------------HHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEec
Confidence 122334556777766 6666544 46665 67 57899
Q ss_pred cEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC------cccchHHHHHHHHHHHHhhHH
Q 013435 342 DAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG------LLGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 342 D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~------~~~a~~~a~~~a~~i~~~l~~ 415 (443)
|.||+|+|++|++ .++...++..+ +|++.+| ++++++.|+|||+|||+.. ...|..+|+.+|.+|.+.+..
T Consensus 242 D~vi~a~G~~p~~-~~l~~~~~~~~-~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 318 (335)
T 2zbw_A 242 DAVLILAGYITKL-GPLANWGLALE-KNKIKVD-TTMATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAYANP 318 (335)
T ss_dssp SEEEECCCEEEEC-GGGGGSCCCEE-TTEEECC-TTCBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHHHHCT
T ss_pred CEEEEeecCCCCc-hHhhhcceecc-CCeeeeC-CCCCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHHHhhh
Confidence 9999999999997 56776677664 7899999 6788999999999999742 235778999999999998865
Q ss_pred HHHhHhhhhccccCC
Q 013435 416 EAKKLMAFSRSLPLP 430 (443)
Q Consensus 416 ~~~~~~~~~~~~~~~ 430 (443)
.......++...+.|
T Consensus 319 ~~~~~~~~~~~~~~~ 333 (335)
T 2zbw_A 319 ALKVNPGHSSEKAAP 333 (335)
T ss_dssp TSCSSCCCGGGSCCT
T ss_pred hhccCCcccccccCC
Confidence 444434455444554
No 9
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=100.00 E-value=6.4e-37 Score=291.44 Aligned_cols=294 Identities=16% Similarity=0.194 Sum_probs=228.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
.++||+|||||++|+++|..|++.|++|+|+|+.+.+||.|.. .++...+. .++..+ .....++..
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~-~~~~~~~~------~~~~~~-------~~~~~~~~~ 71 (332)
T 3lzw_A 6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSA-LYPEKYIY------DVAGFP-------KIRAQELIN 71 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH-HCTTSEEC------CSTTCS-------SEEHHHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehh-cCCCceEe------ccCCCC-------CCCHHHHHH
Confidence 3579999999999999999999999999999999999998854 13322211 111111 125789999
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC-CCccCCCCCCCCCcccEeec
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA-EEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~-~p~~p~~~g~~~~~~~~~~~ 191 (443)
++.+++.++++.++++++|++++...+ +.|.|.+.+ .++.||+||+|||..+ .|..|.+||...+.+..++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~v~~~~------g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~ 144 (332)
T 3lzw_A 72 NLKEQMAKFDQTICLEQAVESVEKQAD-GVFKLVTNE------ETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY 144 (332)
T ss_dssp HHHHHHTTSCCEEECSCCEEEEEECTT-SCEEEEESS------EEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES
T ss_pred HHHHHHHHhCCcEEccCEEEEEEECCC-CcEEEEECC------CEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE
Confidence 999999999999999999999998763 478888876 3499999999999533 78888899987766555666
Q ss_pred CCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHH
Q 013435 192 SSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLM 271 (443)
Q Consensus 192 ~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (443)
.+.+....++++++|||+|.+|+|+|..|++.+.+|+++.|++. +.+..
T Consensus 145 -~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~-~~~~~----------------------------- 193 (332)
T 3lzw_A 145 -FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK-FRAHE----------------------------- 193 (332)
T ss_dssp -SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS-CSSCH-----------------------------
T ss_pred -ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc-CCccH-----------------------------
Confidence 55565666789999999999999999999999999999998873 21111
Q ss_pred HHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc----EEEcC-----CcEEc
Q 013435 272 SWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA----AEFID-----GSIEN 340 (443)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~----v~~~~-----g~~~~ 340 (443)
...+.+.+.+|+++.+ +.++..++ +.+.+ +++++
T Consensus 194 -----------------------------------~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~ 238 (332)
T 3lzw_A 194 -----------------------------------HSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILE 238 (332)
T ss_dssp -----------------------------------HHHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEE
T ss_pred -----------------------------------HHHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEE
Confidence 0012234556777765 66666543 77665 35789
Q ss_pred ccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC---C---cccchHHHHHHHHHHHHhhH
Q 013435 341 YDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR---G---LLGASIDARRISEDIEHQWN 414 (443)
Q Consensus 341 ~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~---~---~~~a~~~a~~~a~~i~~~l~ 414 (443)
+|.||+|+|+.|+. .++...++.. ++|++.+| ++.+++.|+|||+|||+. . ...|..+|+.+|.+|...+.
T Consensus 239 ~D~vv~a~G~~p~~-~~~~~~~~~~-~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 315 (332)
T 3lzw_A 239 IDDLIVNYGFVSSL-GPIKNWGLDI-EKNSIVVK-STMETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMD 315 (332)
T ss_dssp CSEEEECCCEECCC-GGGGGSSCCE-ETTEEECC-TTSBCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeeccCCCc-hHHhhcCccc-cCCeEEeC-CCCceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHHhhC
Confidence 99999999999998 6777777776 78999999 688899999999999972 2 33678899999999999886
Q ss_pred HH
Q 013435 415 SE 416 (443)
Q Consensus 415 ~~ 416 (443)
..
T Consensus 316 ~~ 317 (332)
T 3lzw_A 316 PK 317 (332)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 10
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=100.00 E-value=8.2e-37 Score=291.46 Aligned_cols=297 Identities=15% Similarity=0.220 Sum_probs=221.3
Q ss_pred hhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecC----CCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCC
Q 013435 29 ARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERA----NCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTY 104 (443)
Q Consensus 29 ~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~----~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (443)
+...+.+||+|||||++|+++|..|++.|++|+|+|+. ..+||.|.... ....++ .++.+
T Consensus 17 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~----------~~~~~~------~~~~~ 80 (338)
T 3itj_A 17 RGSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTT----------EIENFP------GFPDG 80 (338)
T ss_dssp ----CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSS----------EECCST------TCTTC
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccch----------hhcccC------CCccc
Confidence 34466789999999999999999999999999999994 46788776521 000111 11223
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGF 184 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~ 184 (443)
....++..++.+.+.++++++++++ |++++... ..|.+.+..... ...+.||+||+|+| +.+..|.+||.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~--~~~~v~~~~~~~--~~~~~~d~vvlAtG--~~~~~~~~~g~~~~ 153 (338)
T 3itj_A 81 LTGSELMDRMREQSTKFGTEIITET-VSKVDLSS--KPFKLWTEFNED--AEPVTTDAIILATG--ASAKRMHLPGEETY 153 (338)
T ss_dssp EEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSS--SSEEEEETTCSS--SCCEEEEEEEECCC--EEECCCCCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcC--CEEEEEEEecCC--CcEEEeCEEEECcC--CCcCCCCCCCchhc
Confidence 4678999999999999999998888 99998876 677777632111 16789999999999 57778888887654
Q ss_pred cccEeecCCCCCCC--CCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhH
Q 013435 185 RGPIFHSSSYKTGE--LFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVR 262 (443)
Q Consensus 185 ~~~~~~~~~~~~~~--~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~ 262 (443)
.+..++.+...+.. ...+++++|||+|.+|+|+|..|.+.+.+|+++.|++. +++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~-~~~~~-------------------- 212 (338)
T 3itj_A 154 WQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDH-LRAST-------------------- 212 (338)
T ss_dssp BTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS-CCSCH--------------------
T ss_pred cCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc-cCCCH--------------------
Confidence 44445554433333 45789999999999999999999999999999998873 21210
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhc-CCCeEEecC--CcEEeCCc-----EEEc
Q 013435 263 LVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIR-SGNIKVCRA--IKRLTHHA-----AEFI 334 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~--v~~~~~~~-----v~~~ 334 (443)
.+.+.+. ..+|+++.+ +.++..++ +.+.
T Consensus 213 --------------------------------------------~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~ 248 (338)
T 3itj_A 213 --------------------------------------------IMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIK 248 (338)
T ss_dssp --------------------------------------------HHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEE
T ss_pred --------------------------------------------HHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEE
Confidence 0112222 337787766 66665543 6776
Q ss_pred C-----CcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHH
Q 013435 335 D-----GSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRI 405 (443)
Q Consensus 335 ~-----g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~ 405 (443)
+ ++++++|.||+|+|+.|+. .++.. ++..+++|++.+++++++++.|+||++|||+.. +..|..+|+.+
T Consensus 249 ~~~~g~~~~i~~D~vi~a~G~~p~~-~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~a 326 (338)
T 3itj_A 249 NTKKNEETDLPVSGLFYAIGHTPAT-KIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMA 326 (338)
T ss_dssp ETTTTEEEEEECSEEEECSCEEECC-GGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHH
T ss_pred ECCCCceEEEEeCEEEEEeCCCCCh-hHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccceeeehhhhHHH
Confidence 5 4579999999999999997 55555 777778999997547888999999999999853 34788999999
Q ss_pred HHHHHHhhHH
Q 013435 406 SEDIEHQWNS 415 (443)
Q Consensus 406 a~~i~~~l~~ 415 (443)
|.+|...+..
T Consensus 327 a~~i~~~l~~ 336 (338)
T 3itj_A 327 ALDAEKYLTS 336 (338)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999988753
No 11
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=100.00 E-value=2.2e-36 Score=286.54 Aligned_cols=288 Identities=15% Similarity=0.208 Sum_probs=225.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
+.+||+|||||++|+++|..|++.|++|+|+|+. +||.|..... ...++..+ .....++.+
T Consensus 14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~----------~~~~~~~~-------~~~~~~~~~ 74 (323)
T 3f8d_A 14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGI----------VDDYLGLI-------EIQASDMIK 74 (323)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCE----------ECCSTTST-------TEEHHHHHH
T ss_pred CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeeccccc----------ccccCCCC-------CCCHHHHHH
Confidence 4589999999999999999999999999999998 8888765210 00111111 135788999
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
++.+++.++++++++ ++|++++..+ +.|.+.+.++ .++.||+||+||| +.|..|.+||...+.+..++.+
T Consensus 75 ~~~~~~~~~~v~~~~-~~v~~i~~~~--~~~~v~~~~g-----~~~~~d~lvlAtG--~~~~~~~i~g~~~~~~~~~~~~ 144 (323)
T 3f8d_A 75 VFNKHIEKYEVPVLL-DIVEKIENRG--DEFVVKTKRK-----GEFKADSVILGIG--VKRRKLGVPGEQEFAGRGISYC 144 (323)
T ss_dssp HHHHHHHTTTCCEEE-SCEEEEEEC----CEEEEESSS-----CEEEEEEEEECCC--CEECCCCCTTTTTTBTTTEESC
T ss_pred HHHHHHHHcCCEEEE-EEEEEEEecC--CEEEEEECCC-----CEEEcCEEEECcC--CCCccCCCCchhhhcCCceEEe
Confidence 999999999999888 8899999876 6788888765 6899999999999 5678888999877655556665
Q ss_pred CCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHH
Q 013435 193 SYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMS 272 (443)
Q Consensus 193 ~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (443)
...+.....+++++|||+|.+|+|+|..|.+.+.+|+++.|++. +++.+
T Consensus 145 ~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~-~~~~~------------------------------ 193 (323)
T 3f8d_A 145 SVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDT-FKAQP------------------------------ 193 (323)
T ss_dssp HHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSS-CCSCH------------------------------
T ss_pred ccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCC-CCcCH------------------------------
Confidence 55555556789999999999999999999999999999998873 22211
Q ss_pred HHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh-cCCCeEEecC--CcEEeCC----cEEEcC---Cc--EEc
Q 013435 273 WLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI-RSGNIKVCRA--IKRLTHH----AAEFID---GS--IEN 340 (443)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~--v~~~~~~----~v~~~~---g~--~~~ 340 (443)
.+.+.+ +..+|+++.+ +.++..+ ++.+.+ |+ +++
T Consensus 194 ----------------------------------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~ 239 (323)
T 3f8d_A 194 ----------------------------------IYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELN 239 (323)
T ss_dssp ----------------------------------HHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEE
T ss_pred ----------------------------------HHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEE
Confidence 011222 2347787776 6666654 367765 76 789
Q ss_pred ccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC------cccchHHHHHHHHHHHHhhH
Q 013435 341 YDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG------LLGASIDARRISEDIEHQWN 414 (443)
Q Consensus 341 ~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~------~~~a~~~a~~~a~~i~~~l~ 414 (443)
+|.||+|+|+.|++ .++...++..+++|++.+| ++.+++.++||++|||+.. ...|..+|+.+|.+|...+.
T Consensus 240 ~D~vv~a~G~~p~~-~~~~~~g~~~~~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 317 (323)
T 3f8d_A 240 VNGVFIEIGFDPPT-DFAKSNGIETDTNGYIKVD-EWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVT 317 (323)
T ss_dssp CSEEEECCCEECCH-HHHHHTTCCBCTTSSBCCC-TTCBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCEEEEEECCCCCh-hHHhhcCeeecCCCcEecC-CCceecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHHH
Confidence 99999999999997 5677778877889999999 6888999999999999863 33678899999999999886
Q ss_pred HH
Q 013435 415 SE 416 (443)
Q Consensus 415 ~~ 416 (443)
..
T Consensus 318 ~~ 319 (323)
T 3f8d_A 318 EK 319 (323)
T ss_dssp HC
T ss_pred Hh
Confidence 53
No 12
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=9.2e-36 Score=278.89 Aligned_cols=284 Identities=16% Similarity=0.185 Sum_probs=219.2
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
|++||+|||||++|+++|..|++.|++++|+|+.+..+..+... ..++. .......++..
T Consensus 1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~-------------~~~~~-------~~~~~~~~~~~ 60 (297)
T 3fbs_A 1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHS-------------HGFLG-------QDGKAPGEIIA 60 (297)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCC-------------CSSTT-------CTTCCHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhh-------------cCCcC-------CCCCCHHHHHH
Confidence 35799999999999999999999999999999976433221110 00110 11346788999
Q ss_pred HHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 113 YLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 113 ~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
++.+.+.++ ++.+. ..+|+.++..+ +.|.|++.++ .++.||+||+||| +.|..|.+||...+.+...+.
T Consensus 61 ~~~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~v~~~~g-----~~~~~d~vviAtG--~~~~~~~~~g~~~~~~~~~~~ 130 (297)
T 3fbs_A 61 EARRQIERYPTIHWV-EGRVTDAKGSF--GEFIVEIDGG-----RRETAGRLILAMG--VTDELPEIAGLRERWGSAVFH 130 (297)
T ss_dssp HHHHHHTTCTTEEEE-ESCEEEEEEET--TEEEEEETTS-----CEEEEEEEEECCC--CEEECCCCBTTGGGBTTTEES
T ss_pred HHHHHHHhcCCeEEE-EeEEEEEEEcC--CeEEEEECCC-----CEEEcCEEEECCC--CCCCCCCCCCchhhcCCeeEE
Confidence 999988887 45543 45899999887 6788888765 6799999999999 577888899987765555666
Q ss_pred CCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHH
Q 013435 192 SSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLM 271 (443)
Q Consensus 192 ~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (443)
+.+.+.....+++++|||+|.+|+|+|..|.+.| +|+++.+++..+
T Consensus 131 ~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~~--------------------------------- 176 (297)
T 3fbs_A 131 CPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVEP--------------------------------- 176 (297)
T ss_dssp CHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCCC---------------------------------
T ss_pred cccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCCC---------------------------------
Confidence 6555555667899999999999999999999998 999998776200
Q ss_pred HHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC-CcEEeCC-cEEEcCCcEEcccEEEEccC
Q 013435 272 SWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA-IKRLTHH-AAEFIDGSIENYDAIILATG 349 (443)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~~~~~-~v~~~~g~~~~~D~vi~atG 349 (443)
.....+.+.+.+|+++.. +.++..+ .+.+.+|+++++|.||+|+|
T Consensus 177 ---------------------------------~~~~~~~l~~~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G 223 (297)
T 3fbs_A 177 ---------------------------------DADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPK 223 (297)
T ss_dssp ---------------------------------CHHHHHHHHHTTCEEECSCEEEEETTEEEEETTSCEEEESEEEECCE
T ss_pred ---------------------------------CHHHHHHHHHCCcEEEcceeeeeecCCeEEeCCCCEEEEEEEEEccC
Confidence 011123344556777654 7777776 78899999999999999999
Q ss_pred CCCCCCCCccCcCcCcc--CCC-CcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHHHHHHHHHhhHH
Q 013435 350 YKSNVPYWLKDTEMFSE--KDG-FPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 350 ~~~~~~~~~~~~~l~~~--~~G-~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~~a~~i~~~l~~ 415 (443)
+.|+. .++...++..+ +.| ++.+| ++++++.|+||++|||+.. ...|..+|+.+|.+|...+..
T Consensus 224 ~~p~~-~~~~~~g~~~~~~~~G~~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 293 (297)
T 3fbs_A 224 LRITV-DWIEKLGCAVEEGPMGSTIVTD-PMKQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSILF 293 (297)
T ss_dssp EECCC-SCHHHHTCCEEEETTEEEECCC-TTCBCSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCc-hhHHhcCCccccCCCCceEEeC-CCCccCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHHHHHhh
Confidence 99998 67666677654 357 89999 6788999999999999873 337889999999999988753
No 13
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=100.00 E-value=1.1e-35 Score=280.54 Aligned_cols=287 Identities=18% Similarity=0.232 Sum_probs=215.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
+|||+|||||++|+++|..|++.|. +++|+|+. .+||.|..... ...++. ++......++.+
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~----------~~~~~~------~~~~~~~~~~~~ 63 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSE----------IENYPG------VKEVVSGLDFMQ 63 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSC----------BCCSTT------CCSCBCHHHHHH
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccccccc----------cccCCC------CcccCCHHHHHH
Confidence 4799999999999999999999999 99999995 57777654210 001111 112346788999
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
++.+.+.+.+++++. ++|.+++..+ +.|.|.+.++ ..++||+||+||| +.+..|.++|.+.+.+..++++
T Consensus 64 ~l~~~~~~~~v~~~~-~~v~~i~~~~--~~~~v~~~~g-----~~~~~~~vv~AtG--~~~~~~~~~g~~~~~~~~~~~~ 133 (311)
T 2q0l_A 64 PWQEQCFRFGLKHEM-TAVQRVSKKD--SHFVILAEDG-----KTFEAKSVIIATG--GSPKRTGIKGESEYWGKGVSTC 133 (311)
T ss_dssp HHHHHHHTTSCEEEC-SCEEEEEEET--TEEEEEETTS-----CEEEEEEEEECCC--EEECCCCCBTHHHHBTTTEESC
T ss_pred HHHHHHHHcCCEEEE-EEEEEEEEcC--CEEEEEEcCC-----CEEECCEEEECCC--CCCCCCCCCChhhccCCcEEEe
Confidence 999999988988877 6899999876 6777876654 5799999999999 5777888888654433345554
Q ss_pred CCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHH
Q 013435 193 SYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMS 272 (443)
Q Consensus 193 ~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (443)
...+.....+++|+|||+|.+|+|+|..|.+.|.+|+++.|++... . . .
T Consensus 134 ~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~-~------------------~----------- 182 (311)
T 2q0l_A 134 ATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR-C-A------------------P----------- 182 (311)
T ss_dssp HHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC-S-C------------------H-----------
T ss_pred ecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC-C-C------------------H-----------
Confidence 3333444567999999999999999999999999999998877311 0 0 0
Q ss_pred HHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhc-CCCeEEecC--CcEEeCC-----cEEEc---CCc--EE
Q 013435 273 WLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIR-SGNIKVCRA--IKRLTHH-----AAEFI---DGS--IE 339 (443)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~--v~~~~~~-----~v~~~---~g~--~~ 339 (443)
.+.+.+. +.+|+++.+ +.++..+ ++.+. +|+ ++
T Consensus 183 ----------------------------------~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i 228 (311)
T 2q0l_A 183 ----------------------------------ITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKREL 228 (311)
T ss_dssp ----------------------------------HHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred ----------------------------------HHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEE
Confidence 0112221 346777765 6666543 36665 665 68
Q ss_pred cccEEEEccCCCCCCCCCccCcC----cCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHH
Q 013435 340 NYDAIILATGYKSNVPYWLKDTE----MFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEH 411 (443)
Q Consensus 340 ~~D~vi~atG~~~~~~~~~~~~~----l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~ 411 (443)
++|.||+|+|++|++ .++...+ +..+++|++.+| ++++++.|+||++|||+.. ...|..||+.+|.+|..
T Consensus 229 ~~D~vi~a~G~~p~~-~~l~~~g~~~~l~~~~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 306 (311)
T 2q0l_A 229 VVPGFFIFVGYDVNN-AVLKQEDNSMLCKCDEYGSIVVD-FSMKTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVIS 306 (311)
T ss_dssp ECSEEEECSCEEECC-GGGBCTTSCBSSCBCTTSCBCCC-TTCBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ecCEEEEEecCccCh-hhhhcccccceeEeccCCCEEeC-CccccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHH
Confidence 999999999999998 5666553 766778999999 6788999999999999863 33688899999999998
Q ss_pred hhH
Q 013435 412 QWN 414 (443)
Q Consensus 412 ~l~ 414 (443)
.+.
T Consensus 307 ~l~ 309 (311)
T 2q0l_A 307 YLE 309 (311)
T ss_dssp HHH
T ss_pred HHh
Confidence 774
No 14
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=100.00 E-value=2.9e-35 Score=279.34 Aligned_cols=289 Identities=19% Similarity=0.245 Sum_probs=217.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
..+||+|||||++|+++|..|++.|++++|+|+. .+||.|..... ...++.+ +......++.+
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~~------~~~~~~~~~~~ 69 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEE----------VENFPGF------PEPIAGMELAQ 69 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSC----------BCCSTTC------SSCBCHHHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccc----------cccCCCC------CCCCCHHHHHH
Confidence 3579999999999999999999999999999998 67887754210 0011111 11245788999
Q ss_pred HHHHHHHHcCCccccceeEEEEEEe--CCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYD--HLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~--~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
++.+.+.+++++++. .+|.+++.. ++ ..|.|.+.++ ..++||+||+||| +.|..|.+||.+.+.+..++
T Consensus 70 ~l~~~~~~~gv~~~~-~~v~~i~~~~~~~-~~~~v~~~~g-----~~~~~~~vv~AtG--~~~~~~~i~g~~~~~~~~~~ 140 (325)
T 2q7v_A 70 RMHQQAEKFGAKVEM-DEVQGVQHDATSH-PYPFTVRGYN-----GEYRAKAVILATG--ADPRKLGIPGEDNFWGKGVS 140 (325)
T ss_dssp HHHHHHHHTTCEEEE-CCEEEEEECTTSS-SCCEEEEESS-----CEEEEEEEEECCC--EEECCCCCTTTTTTBTTTEE
T ss_pred HHHHHHHHcCCEEEe-eeEEEEEeccCCC-ceEEEEECCC-----CEEEeCEEEECcC--CCcCCCCCCChhhccCceEE
Confidence 999999999998876 579999886 42 2266776654 5899999999999 56778889988766555556
Q ss_pred cCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHH
Q 013435 191 SSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLL 270 (443)
Q Consensus 191 ~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (443)
.+...+.....+++|+|||+|.+|+|+|..|.+.+.+|+++.|++. +.+..
T Consensus 141 ~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-~~~~~---------------------------- 191 (325)
T 2q7v_A 141 TCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDT-LRANK---------------------------- 191 (325)
T ss_dssp SCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS-CCSCH----------------------------
T ss_pred EeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCc-CCcch----------------------------
Confidence 5544344445679999999999999999999999999999998873 11100
Q ss_pred HHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh-cCCCeEEecC--CcEEeCC----cEEEc---CCc--E
Q 013435 271 MSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI-RSGNIKVCRA--IKRLTHH----AAEFI---DGS--I 338 (443)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~--v~~~~~~----~v~~~---~g~--~ 338 (443)
.+.+.+ +..+|+++.+ ++++..+ ++.+. +|+ +
T Consensus 192 ------------------------------------~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~ 235 (325)
T 2q7v_A 192 ------------------------------------VAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSE 235 (325)
T ss_dssp ------------------------------------HHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEE
T ss_pred ------------------------------------HHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEE
Confidence 001112 2346777766 6666544 46665 565 7
Q ss_pred EcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHhhH
Q 013435 339 ENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQWN 414 (443)
Q Consensus 339 ~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~l~ 414 (443)
+++|.||+|+|++|++ .++... +..+++|++.+| ++++++.|+||++|||+.. ...|..||+.+|.+|...+.
T Consensus 236 i~~D~vi~a~G~~p~~-~~l~~~-~~~~~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 312 (325)
T 2q7v_A 236 LATDGVFIFIGHVPNT-AFVKDT-VSLRDDGYVDVR-DEIYTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQLA 312 (325)
T ss_dssp EECSEEEECSCEEESC-GGGTTT-SCBCTTSCBCCB-TTTBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCEEEEccCCCCCh-HHHhhh-cccCCCccEecC-CCCccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998 566655 656678999999 6788999999999999753 33688999999999999886
Q ss_pred H
Q 013435 415 S 415 (443)
Q Consensus 415 ~ 415 (443)
.
T Consensus 313 ~ 313 (325)
T 2q7v_A 313 A 313 (325)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=100.00 E-value=1.6e-35 Score=285.19 Aligned_cols=299 Identities=19% Similarity=0.213 Sum_probs=222.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
..+||+|||||++|+++|..|++.|++|+|||+.+.+||.|... ++...+ +..+..+ .....++.+
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~~~------~~~~~~~-------~~~~~~~~~ 78 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAAL-YPEKHI------YDVAGFP-------EVPAIDLVE 78 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHT-CTTSEE------CCSTTCS-------SEEHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccc-CCCccc------ccCCCCC-------CCCHHHHHH
Confidence 35899999999999999999999999999999999999988542 221111 1111111 124688888
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC-CCccCCCCC-CCCCcccEee
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA-EEVVPYIEG-MDGFRGPIFH 190 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~-~p~~p~~~g-~~~~~~~~~~ 190 (443)
++.+.+.++++.++++++|+.++..++ ..|.|++.++ ..+.||+||+|||..+ .|..|.++| .+.+.+..++
T Consensus 79 ~l~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~v~~~~g-----~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~ 152 (360)
T 3ab1_A 79 SLWAQAERYNPDVVLNETVTKYTKLDD-GTFETRTNTG-----NVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVY 152 (360)
T ss_dssp HHHHHHHTTCCEEECSCCEEEEEECTT-SCEEEEETTS-----CEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEE
T ss_pred HHHHHHHHhCCEEEcCCEEEEEEECCC-ceEEEEECCC-----cEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEE
Confidence 999988888988889999999998753 3788887654 5799999999999654 567777888 6655543343
Q ss_pred cCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHH
Q 013435 191 SSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLL 270 (443)
Q Consensus 191 ~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (443)
.+ +.+.....+++|+|||+|.+|+|+|..|.+.+.+|+++.|++. +.+.+.
T Consensus 153 ~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~-~~~~~~--------------------------- 203 (360)
T 3ab1_A 153 YA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE-FQGHGK--------------------------- 203 (360)
T ss_dssp SS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS-CSSCSH---------------------------
T ss_pred Ee-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCC-CCCCHH---------------------------
Confidence 33 2333445689999999999999999999999999999998873 222110
Q ss_pred HHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC-----cEEEc--CC--cEE
Q 013435 271 MSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH-----AAEFI--DG--SIE 339 (443)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~-----~v~~~--~g--~~~ 339 (443)
....+.+.+.+.+|+++.+ +.++..+ ++.+. +| +++
T Consensus 204 ---------------------------------~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i 250 (360)
T 3ab1_A 204 ---------------------------------TAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTV 250 (360)
T ss_dssp ---------------------------------HHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEE
T ss_pred ---------------------------------HHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEE
Confidence 0001122334456777776 6666543 46664 77 578
Q ss_pred cccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC------cccchHHHHHHHHHHHHhh
Q 013435 340 NYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG------LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 340 ~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~------~~~a~~~a~~~a~~i~~~l 413 (443)
++|.||+|+|+.|+. .++...++..+ +|++.+| ++++++.|+|||+|||+.. ...|..||+.+|++|.+.+
T Consensus 251 ~~D~vi~a~G~~p~~-~~l~~~~~~~~-~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 327 (360)
T 3ab1_A 251 EADRLLILIGFKSNL-GPLARWDLELY-ENALVVD-SHMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYI 327 (360)
T ss_dssp ECSEEEECCCBCCSC-GGGGGSSCCEE-TTEEECC-TTSBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eCCEEEECCCCCCCH-HHHHhhccccc-cCeeeec-CCCcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHhhc
Confidence 999999999999997 57776677664 7999999 5778899999999999742 2357789999999999887
Q ss_pred HHH
Q 013435 414 NSE 416 (443)
Q Consensus 414 ~~~ 416 (443)
...
T Consensus 328 ~~~ 330 (360)
T 3ab1_A 328 KPG 330 (360)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 16
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=100.00 E-value=1.7e-35 Score=280.29 Aligned_cols=287 Identities=17% Similarity=0.243 Sum_probs=211.9
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
.+.+||+|||||++|+++|..|++.|++|+|+|+. .+||.|..... ...++.+ ......++.
T Consensus 14 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~~-------~~~~~~~~~ 75 (319)
T 3cty_A 14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGLTAEAPL----------VENYLGF-------KSIVGSELA 75 (319)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTGGGGGCSC----------BCCBTTB-------SSBCHHHHH
T ss_pred cCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-CCCccccccch----------hhhcCCC-------cccCHHHHH
Confidence 34589999999999999999999999999999994 57776643210 0011110 123567888
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
.++.+.+.+.++.++. .+|.+++... +.|.|.++. ..+.||+||+|+| +.+..|.++|...+.+..++.
T Consensus 76 ~~~~~~~~~~~v~~~~-~~v~~i~~~~--~~~~v~~~~------~~~~~~~li~AtG--~~~~~~~i~g~~~~~~~~~~~ 144 (319)
T 3cty_A 76 KLFADHAANYAKIREG-VEVRSIKKTQ--GGFDIETND------DTYHAKYVIITTG--TTHKHLGVKGESEYFGKGTSY 144 (319)
T ss_dssp HHHHHHHHTTSEEEET-CCEEEEEEET--TEEEEEESS------SEEEEEEEEECCC--EEECCCCCBTTTTTBTTTEES
T ss_pred HHHHHHHHHcCCEEEE-eeEEEEEEeC--CEEEEEECC------CEEEeCEEEECCC--CCcccCCCCChHHhCCceEEE
Confidence 8888888888888777 6799998876 667776632 4799999999999 567788888876654444444
Q ss_pred CCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHH
Q 013435 192 SSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLM 271 (443)
Q Consensus 192 ~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (443)
+...+.....+++++|||+|.+|+|+|..|.+.+.+|+++.|++... +. ..+
T Consensus 145 ~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~-~~-------------------~~l-------- 196 (319)
T 3cty_A 145 CSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM-CE-------------------NAY-------- 196 (319)
T ss_dssp CHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC-SC-------------------HHH--------
T ss_pred EEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC-CC-------------------HHH--------
Confidence 43333334567999999999999999999999999999999877311 10 001
Q ss_pred HHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC-----cEEEc---CCc--EE
Q 013435 272 SWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH-----AAEFI---DGS--IE 339 (443)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~-----~v~~~---~g~--~~ 339 (443)
.+.+.+.+|+++.+ +.++..+ ++.+. +|+ ++
T Consensus 197 -------------------------------------~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i 239 (319)
T 3cty_A 197 -------------------------------------VQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLI 239 (319)
T ss_dssp -------------------------------------HHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEE
T ss_pred -------------------------------------HHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEE
Confidence 11122334555544 4444432 35554 565 68
Q ss_pred cccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHhhH
Q 013435 340 NYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQWN 414 (443)
Q Consensus 340 ~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~l~ 414 (443)
++|.||+|+|+.|++ .++...++..+++|++.+| ++++++.|+||++|||+.. ...|..+|+.+|.+|...+.
T Consensus 240 ~~D~vi~a~G~~p~~-~~l~~~gl~~~~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 316 (319)
T 3cty_A 240 ETDGVFIYVGLIPQT-SFLKDSGVKLDERGYIVVD-SRQRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDSI 316 (319)
T ss_dssp CCSEEEECCCEEECC-GGGTTSCCCBCTTSCBCCC-TTCBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ecCEEEEeeCCccCh-HHHhhccccccCCccEeCC-CCCccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998 6777767777788999999 6688999999999999864 33688999999999998874
No 17
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=100.00 E-value=4.4e-35 Score=276.64 Aligned_cols=291 Identities=20% Similarity=0.240 Sum_probs=220.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEE-EecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLI-LERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~i-ie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
.++||+|||||++|+++|..|++.|++++| +|+ +.+||.|..... ...++ .++......++.
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~----------~~~~~------~~~~~~~~~~~~ 65 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSE----------IENYP------GVAQVMDGISFM 65 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSC----------BCCST------TCCSCBCHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeece----------eccCC------CCCCCCCHHHHH
Confidence 467999999999999999999999999999 999 667887755210 00111 112234788999
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
.++.+++.+++++++.+ +|+++ .++..+.|.+..... . .+.||+||+||| +.|..|.+||...+.+..++.
T Consensus 66 ~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~---~--~~~~d~lvlAtG--~~~~~~~~~g~~~~~~~~~~~ 136 (315)
T 3r9u_A 66 APWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGG---K--TELAKAVIVCTG--SAPKKAGFKGEDEFFGKGVST 136 (315)
T ss_dssp HHHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTS---C--EEEEEEEEECCC--EEECCCCCBTTTTTBTTTEES
T ss_pred HHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecC---C--EEEeCEEEEeeC--CCCCCCCCCChhhcCCCeEEe
Confidence 99999999999998887 78888 544224566534332 2 899999999999 578888999988776666777
Q ss_pred CCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHH
Q 013435 192 SSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLM 271 (443)
Q Consensus 192 ~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (443)
+...+.....+++++|||+|.+|+|+|..|.+.+.+|+++.|++... +.. ...
T Consensus 137 ~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~-~~~-------------------~~~------- 189 (315)
T 3r9u_A 137 CATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR-AAP-------------------STV------- 189 (315)
T ss_dssp CHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB-SCH-------------------HHH-------
T ss_pred eecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC-CCH-------------------HHH-------
Confidence 66555555678999999999999999999999999999999887321 100 000
Q ss_pred HHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc-----EEEc--CCc--EEc
Q 013435 272 SWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA-----AEFI--DGS--IEN 340 (443)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~-----v~~~--~g~--~~~ 340 (443)
.+.+++.+|+++.+ +.++..++ +.+. +|+ +++
T Consensus 190 -------------------------------------~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~ 232 (315)
T 3r9u_A 190 -------------------------------------EKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLN 232 (315)
T ss_dssp -------------------------------------HHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEEC
T ss_pred -------------------------------------HHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEee
Confidence 11223557777765 66665443 6665 776 789
Q ss_pred ccEEEEccCCCCCCCCCccC---cC-cCccCCCCcCCCCCCCCcCCCceEEEeeccC----CcccchHHHHHHHHHHHHh
Q 013435 341 YDAIILATGYKSNVPYWLKD---TE-MFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR----GLLGASIDARRISEDIEHQ 412 (443)
Q Consensus 341 ~D~vi~atG~~~~~~~~~~~---~~-l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~----~~~~a~~~a~~~a~~i~~~ 412 (443)
+|.||+|+|++|+. .++.. .+ +..+++|++.+| ++++++.|+||++|||+. ....|..+|+.+|.+|...
T Consensus 233 ~D~vv~a~G~~p~~-~~~~~~~~~g~l~~~~~g~i~vd-~~~~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 310 (315)
T 3r9u_A 233 VPGIFTFVGLNVRN-EILKQDDSKFLCNMEEGGQVSVD-LKMQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAY 310 (315)
T ss_dssp CSCEEECSCEEECC-GGGBCTTSCBSSCBCTTSCBCCC-TTCBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEEcCCCCc-hhhhcccccceeeecCCCcEEeC-CCcccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHHH
Confidence 99999999999998 55554 34 777788999999 688899999999999973 2347889999999999998
Q ss_pred hHH
Q 013435 413 WNS 415 (443)
Q Consensus 413 l~~ 415 (443)
+..
T Consensus 311 l~~ 313 (315)
T 3r9u_A 311 IES 313 (315)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 18
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.7e-35 Score=275.71 Aligned_cols=288 Identities=17% Similarity=0.225 Sum_probs=199.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
+.|||+||||||+|++||..|++.|++|+|||+. .+||.+.+.. ....++.. ......++..
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~~~~----------~i~~~p~~-------~~~~~~~~~~ 66 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMANTE----------EVENFPGF-------EMITGPDLST 66 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCS----------CBCCSTTC-------SSBCHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeeeccc----------ccCCcCCc-------cccchHHHHH
Confidence 4689999999999999999999999999999986 4676543310 00011111 1135677777
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
.......+....+..+..+....... .. +...++ .+++||++|+||| ++|+.|++||.+.+.+..++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~-----~~~~~d~liiAtG--s~~~~~~ipG~~~~~~~~v~~~ 135 (312)
T 4gcm_A 67 KMFEHAKKFGAVYQYGDIKSVEDKGE---YK-VINFGN-----KELTAKAVIIATG--AEYKKIGVPGEQELGGRGVSYC 135 (312)
T ss_dssp HHHHHHHHTTCEEEECCCCEEEECSS---CE-EEECSS-----CEEEEEEEEECCC--EEECCCCCTTTTTTBTTTEESC
T ss_pred HHHHHHhhccccccceeeeeeeeeec---ce-eeccCC-----eEEEeceeEEccc--CccCcCCCCChhhhCCccEEee
Confidence 77777777666655554444333322 22 223332 6899999999999 7888999999887766666666
Q ss_pred CCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHH
Q 013435 193 SYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMS 272 (443)
Q Consensus 193 ~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (443)
...+....++++++|||||++|+|+|..|++.|.+||++.|++ .++|.... .++
T Consensus 136 ~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~~~~~~~-------------------~~~------ 189 (312)
T 4gcm_A 136 AVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD-ELRAQRIL-------------------QDR------ 189 (312)
T ss_dssp HHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS-SCCSCHHH-------------------HHH------
T ss_pred eccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc-ccCcchhH-------------------HHH------
Confidence 6656666778999999999999999999999999999999988 33332210 000
Q ss_pred HHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEE--eC-----Cc-EE--EcCCcEEc
Q 013435 273 WLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRL--TH-----HA-AE--FIDGSIEN 340 (443)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~--~~-----~~-v~--~~~g~~~~ 340 (443)
.+...++..... +... .. .. .. ..++..++
T Consensus 190 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (312)
T 4gcm_A 190 --------------------------------------AFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHE 231 (312)
T ss_dssp --------------------------------------HHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred --------------------------------------HHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEe
Confidence 001111111111 0000 00 00 11 12335789
Q ss_pred ccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHhhHHH
Q 013435 341 YDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQWNSE 416 (443)
Q Consensus 341 ~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~l~~~ 416 (443)
+|.|++++|..|+. .++...++. +++|+|.+| ++++|++|+|||+|||+.. +..|..+|+.+|.+|+++|...
T Consensus 232 ~d~v~~~~g~~~~~-~~~~~~g~~-~~~G~I~vd-~~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~l 308 (312)
T 4gcm_A 232 ADGVFIYIGMKPLT-APFKDLGIT-NDVGYIVTK-DDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHL 308 (312)
T ss_dssp CSEEEECSCEEESC-GGGGGGTCB-CTTSCBCCC-TTSBCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEeecCCCcCc-hhHHhccee-cCCCeEeeC-CCCccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998 566666664 478999999 7889999999999999742 3368899999999999998653
No 19
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=100.00 E-value=2.6e-35 Score=276.92 Aligned_cols=287 Identities=15% Similarity=0.211 Sum_probs=205.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
+.|||+||||||+|++||..|++.|++|+|+|+.. .||.+..+ | +.+... ......++.+
T Consensus 5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~~~~~-~--------------~~~~~~----~~~~~~~~~~ 64 (304)
T 4fk1_A 5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNRVTQN-S--------------HGFITR----DGIKPEEFKE 64 (304)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGGGSSC-B--------------CCSTTC----TTBCHHHHHH
T ss_pred CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCeeeee-c--------------CCccCC----CCCCHHHHHH
Confidence 45899999999999999999999999999999975 44433221 1 111100 0124567777
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
...+...+++...+....+..+..... +.|.+.+.++ .+++||+|||||| ++|+.|++||.+.+.+..++.+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g-----~~~~a~~liiATG--s~p~~p~i~G~~~~~~~~v~~~ 136 (304)
T 4fk1_A 65 IGLNEVMKYPSVHYYEKTVVMITKQST-GLFEIVTKDH-----TKYLAERVLLATG--MQEEFPSIPNVREYYGKSLFSC 136 (304)
T ss_dssp HHHHHHTTSTTEEEEECCEEEEEECTT-SCEEEEETTC-----CEEEEEEEEECCC--CEEECCSCTTHHHHBTTTEESC
T ss_pred HHHHHHHhcCCEEEEeeEEEEeeecCC-CcEEEEECCC-----CEEEeCEEEEccC--CccccccccCccccccceeeec
Confidence 776666666644455556666666543 5677877765 7899999999999 7889999999776555556665
Q ss_pred CCCCCCCCCCCeEEEEccCCC-HHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHH
Q 013435 193 SYKTGELFRDKNVLVVGCGNS-GMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLM 271 (443)
Q Consensus 193 ~~~~~~~~~~~~v~ViG~G~~-~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (443)
..++....++++++|||||.. ++|+|..+...+.+|+++.+.+. +.+ ..
T Consensus 137 ~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~-~~~---------------------~~-------- 186 (304)
T 4fk1_A 137 PYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNE-LSQ---------------------TI-------- 186 (304)
T ss_dssp HHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCC-CCH---------------------HH--------
T ss_pred cccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEecccc-chh---------------------hh--------
Confidence 555555667888999998865 57888888888999998876652 100 00
Q ss_pred HHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC-CcEEeC-----CcEEEcCCcEEcccEEE
Q 013435 272 SWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA-IKRLTH-----HAAEFIDGSIENYDAII 345 (443)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~~~~-----~~v~~~~g~~~~~D~vi 345 (443)
.+.+.+.++.++.+ +.++.. .++.+.+|+++++|.+|
T Consensus 187 -------------------------------------~~~l~~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~v 229 (304)
T 4fk1_A 187 -------------------------------------MDELSNKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGF 229 (304)
T ss_dssp -------------------------------------HHHHHTTTCCEECSCEEEEESGGGCCCEEEETTSCEECCCEEE
T ss_pred -------------------------------------hhhhhccceeEeeeeEEEeecCCCeeeeeeccccceeeeccee
Confidence 11122223333333 333322 24788999999999988
Q ss_pred EccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHhhHHH
Q 013435 346 LATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQWNSE 416 (443)
Q Consensus 346 ~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~l~~~ 416 (443)
+++|..|+. .++...++..+++|+|.+| ++++|+.|+|||+|||+.. +..|..+|+.+|..|.++|..+
T Consensus 230 i~~g~~~~~-~~~~~~g~~~~~~G~I~vd-~~~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~e 302 (304)
T 4fk1_A 230 IVPTFFRPN-QFIEQLGCELQSNGTFVID-DFGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDITDE 302 (304)
T ss_dssp ECCEEECSS-CHHHHTTCCCCTTSSSCSS-TTCBCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeccccCC-hhhhhcCeEECCCCCEEEC-cCCccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888888776 5677778888889999999 7889999999999998742 4578899999999999998653
No 20
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.2e-35 Score=280.22 Aligned_cols=290 Identities=18% Similarity=0.217 Sum_probs=215.0
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
.+.+||+|||||++|+++|..|++.|++++|+|+. .+||.|..... ...++.+ +......++.
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~~------~~~~~~~~~~ 74 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTD----------VENYPGF------RNGITGPELM 74 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSC----------BCCSTTC------TTCBCHHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccch----------hhhcCCC------CCCCCHHHHH
Confidence 45689999999999999999999999999999976 56776643210 0011111 1123568889
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEE-EEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRV-KTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v-~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
.++.+.+.+.+++++.++ |.+++. . +.|.| .+.++ .++.||+||+||| +.+..|.+||...+.+..++
T Consensus 75 ~~l~~~~~~~~v~~~~~~-v~~i~~-~--~~~~v~~~~~g-----~~~~~d~lviAtG--~~~~~~~i~g~~~~~~~~~~ 143 (335)
T 2a87_A 75 DEMREQALRFGADLRMED-VESVSL-H--GPLKSVVTADG-----QTHRARAVILAMG--AAARYLQVPGEQELLGRGVS 143 (335)
T ss_dssp HHHHHHHHHTTCEEECCC-EEEEEC-S--SSSEEEEETTS-----CEEEEEEEEECCC--EEECCCCCTHHHHTBTTTEE
T ss_pred HHHHHHHHHcCCEEEEee-EEEEEe-C--CcEEEEEeCCC-----CEEEeCEEEECCC--CCccCCCCCchHhccCCceE
Confidence 999999999999988886 888887 3 55667 55543 5799999999999 56777888886554444455
Q ss_pred cCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHH
Q 013435 191 SSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLL 270 (443)
Q Consensus 191 ~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (443)
.+...+.....+++|+|||+|.+|+|+|..|.+.+.+|+++.|++. +.+..
T Consensus 144 ~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~-~~~~~---------------------------- 194 (335)
T 2a87_A 144 SCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE-FRASK---------------------------- 194 (335)
T ss_dssp SCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS-CSSCT----------------------------
T ss_pred EeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc-CCccH----------------------------
Confidence 5433333335689999999999999999999999999999998873 21110
Q ss_pred HHHHHhcCccccCCCCCCCCCccccccCCCcccccccch-hhhcCCCeEEecC--CcEEeCCc----EEEc---CC--cE
Q 013435 271 MSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTL-AKIRSGNIKVCRA--IKRLTHHA----AEFI---DG--SI 338 (443)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~--v~~~~~~~----v~~~---~g--~~ 338 (443)
.+. +.+++.+|+++.+ +.++..++ +.+. +| ++
T Consensus 195 ------------------------------------~~~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~ 238 (335)
T 2a87_A 195 ------------------------------------IMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETT 238 (335)
T ss_dssp ------------------------------------THHHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEE
T ss_pred ------------------------------------HHHHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEE
Confidence 001 1123457777766 66666543 6665 35 47
Q ss_pred EcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHhhH
Q 013435 339 ENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQWN 414 (443)
Q Consensus 339 ~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~l~ 414 (443)
+++|.||+|+|++|++ .++. .++..+++|++.+|...++++.|+|||+|||+.. ...|..+|+.+|.+|...+.
T Consensus 239 i~~D~vi~a~G~~p~~-~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~l~ 316 (335)
T 2a87_A 239 LPVTGVFVAIGHEPRS-GLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLA 316 (335)
T ss_dssp ECCSCEEECSCEEECC-TTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCEEEEccCCccCh-hHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHHhh
Confidence 8999999999999998 5554 4666677899999955678999999999999864 33678899999999999986
Q ss_pred HH
Q 013435 415 SE 416 (443)
Q Consensus 415 ~~ 416 (443)
..
T Consensus 317 ~~ 318 (335)
T 2a87_A 317 EH 318 (335)
T ss_dssp HH
T ss_pred cC
Confidence 54
No 21
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=100.00 E-value=1.4e-35 Score=280.05 Aligned_cols=293 Identities=18% Similarity=0.285 Sum_probs=197.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
.+|||+||||||+|++||..|++.|++++|+|+... ||.+...+.+. ......++. ++...+..++..
T Consensus 3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~-gg~~~~G~~~~-----~~~i~~~~g------~~~~i~~~~l~~ 70 (314)
T 4a5l_A 3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA-GGVAAGGQLTT-----TTIIENFPG------FPNGIDGNELMM 70 (314)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG-GGCCTTCGGGG-----SSEECCSTT------CTTCEEHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CCcccCCCcCC-----hHHhhhccC------CcccCCHHHHHH
Confidence 468999999999999999999999999999999753 33222111110 000111111 122346788888
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
.+.+...+++..+... .|..+.... ..+.+.+.++ .++.||+||+||| +.|+.|++||.+......++.+
T Consensus 71 ~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~~~~~~~-----~~~~~~~liiATG--~~~~~~~ipG~~~~~~~~~~~~ 140 (314)
T 4a5l_A 71 NMRTQSEKYGTTIITE-TIDHVDFST--QPFKLFTEEG-----KEVLTKSVIIATG--ATAKRMHVPGEDKYWQNGVSAC 140 (314)
T ss_dssp HHHHHHHHTTCEEECC-CEEEEECSS--SSEEEEETTC-----CEEEEEEEEECCC--EEECCCCCTTHHHHBTTTEESC
T ss_pred HHHHHHhhcCcEEEEe-EEEEeecCC--CceEEEECCC-----eEEEEeEEEEccc--ccccccCCCccccccccceeee
Confidence 8989888888776544 365555554 4555555544 7899999999999 6888899999765444445554
Q ss_pred CCCCC--CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHH
Q 013435 193 SYKTG--ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLL 270 (443)
Q Consensus 193 ~~~~~--~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (443)
...+. ...++++++|||+|.+|+|+|..|++.|.+||++.|.+....+.. ...+.
T Consensus 141 ~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~--------------------~~~~~--- 197 (314)
T 4a5l_A 141 AICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKT--------------------MQERV--- 197 (314)
T ss_dssp HHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHH--------------------HHHHH---
T ss_pred hhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccccch--------------------hhhhh---
Confidence 44333 234689999999999999999999999999999998773221110 00000
Q ss_pred HHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC-----CcEEE-----cCCcE
Q 013435 271 MSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH-----HAAEF-----IDGSI 338 (443)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~-----~~v~~-----~~g~~ 338 (443)
....++..+.. +.++.. +++.+ .++++
T Consensus 198 -----------------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 236 (314)
T 4a5l_A 198 -----------------------------------------LNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKV 236 (314)
T ss_dssp -----------------------------------------HTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEE
T ss_pred -----------------------------------------hcccceeeEeeeeeEEEEeeeeccceeEEeeccccccee
Confidence 00111111111 111110 11222 34567
Q ss_pred EcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHhhH
Q 013435 339 ENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQWN 414 (443)
Q Consensus 339 ~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~l~ 414 (443)
+++|.|++|+|++|++ +++.. .+..+++|++ +| ++++|+.|||||+|||+.. +..|+.+|+.||.+|.++|+
T Consensus 237 i~~d~vi~a~G~~pn~-~~l~~-~~~~~~~G~i-v~-~~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~yL~ 312 (314)
T 4a5l_A 237 VPVAGLFYAIGHSPNS-KFLGG-QVKTADDGYI-LT-EGPKTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKWLQ 312 (314)
T ss_dssp EECSEEEECSCEEESC-GGGTT-SSCBCTTSCB-CC-BTTBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccceEecccccCh-hHhcc-cceEcCCeeE-eC-CCCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998 55543 4555678887 55 4789999999999999854 33688899999999999885
Q ss_pred H
Q 013435 415 S 415 (443)
Q Consensus 415 ~ 415 (443)
.
T Consensus 313 ~ 313 (314)
T 4a5l_A 313 T 313 (314)
T ss_dssp T
T ss_pred c
Confidence 3
No 22
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=100.00 E-value=7.7e-35 Score=274.56 Aligned_cols=287 Identities=21% Similarity=0.252 Sum_probs=213.6
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTYL 114 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (443)
|||+|||||++|+++|..|++.|++++|+|+ ..||.|.... .+ ..+.. ..+....++..++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~--~~--------~~~~~-------~~~~~~~~~~~~~ 62 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTV--DI--------ENYIS-------VPKTEGQKLAGAL 62 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCC--EE--------CCBTT-------BSSEEHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceecccc--cc--------ccccC-------cCCCCHHHHHHHH
Confidence 6899999999999999999999999999976 4688776421 00 00000 1123567889999
Q ss_pred HHHHHHcCCccccceeEEEEEEeCC-CCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecCC
Q 013435 115 ETYTNHFGLDPVFNTTVVNAEYDHL-SRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSS 193 (443)
Q Consensus 115 ~~~~~~~~~~v~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~ 193 (443)
.+++++.+++++.+++|+.++...+ .+.|.|.+.++ .++.||+||+||| +.|..|.+||.+.+.+..++.+.
T Consensus 63 ~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g-----~~~~~~~lv~AtG--~~~~~~~~~g~~~~~~~~~~~~~ 135 (310)
T 1fl2_A 63 KVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASG-----AVLKARSIIVATG--AKWRNMNVPGEDQYRTKGVTYCP 135 (310)
T ss_dssp HHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTS-----CEEEEEEEEECCC--EEECCCCCTTTTTTBTTTEESCH
T ss_pred HHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCC-----CEEEeCEEEECcC--CCcCCCCCCChhhcccceeEEec
Confidence 9999999999999989999986531 23677887654 5799999999999 56777888888766544455443
Q ss_pred CCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHH
Q 013435 194 YKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSW 273 (443)
Q Consensus 194 ~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (443)
..+.....+++|+|||+|.+|+|+|..|+..+.+|+++.|++... .. .
T Consensus 136 ~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~------------------~------------ 183 (310)
T 1fl2_A 136 HCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--AD------------------Q------------ 183 (310)
T ss_dssp HHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--SC------------------H------------
T ss_pred cCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC--cc------------------H------------
Confidence 333334568999999999999999999999999999999887321 00 0
Q ss_pred HHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcC-CCeEEecC--CcEEeCC-----cEEEcC---Cc--EEc
Q 013435 274 LMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRS-GNIKVCRA--IKRLTHH-----AAEFID---GS--IEN 340 (443)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~--v~~~~~~-----~v~~~~---g~--~~~ 340 (443)
.+.+.+.+ .+|+++.+ +.++..+ ++.+.+ |+ +++
T Consensus 184 ---------------------------------~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~ 230 (310)
T 1fl2_A 184 ---------------------------------VLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIE 230 (310)
T ss_dssp ---------------------------------HHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEE
T ss_pred ---------------------------------HHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEE
Confidence 01122223 46777766 5666543 356653 53 689
Q ss_pred ccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHhhHH
Q 013435 341 YDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 341 ~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~l~~ 415 (443)
+|.||+|+|++|++ .++... +..+++|++.+| ++++++.|+|||+|||+.. ...|..+|+.+|.+|...+..
T Consensus 231 ~D~vi~a~G~~p~~-~~l~~~-l~~~~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 306 (310)
T 1fl2_A 231 LAGIFVQIGLLPNT-NWLEGA-VERNRMGEIIID-AKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIR 306 (310)
T ss_dssp CSEEEECSCEEESC-GGGTTT-SCBCTTSCBCCC-TTCBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCEEEEeeCCccCc-hHHhcc-ccccCCCcEEcC-CCCccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHHHH
Confidence 99999999999998 566543 666678999999 6678999999999999864 236888999999999988854
No 23
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=100.00 E-value=4.5e-34 Score=272.04 Aligned_cols=290 Identities=18% Similarity=0.228 Sum_probs=212.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEec----CCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILER----ANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~----~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
.+||+|||||++|+++|..|++.|++++|+|+ ....||.|.... ....++. ++......+
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~----------~~~~~~~------~~~~~~~~~ 71 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTT----------DVENFPG------FPEGILGVE 71 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCS----------EECCSTT------CTTCEEHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeecc----------ccccCCC------CccCCCHHH
Confidence 47999999999999999999999999999998 455666554311 0001111 111235678
Q ss_pred HHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCC----Cc
Q 013435 110 FLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDG----FR 185 (443)
Q Consensus 110 ~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~----~~ 185 (443)
+..++.+.+.+.+++++.++ |..++... +.|.|++ ++ ..++||+||+||| +.+..|.+||... +.
T Consensus 72 ~~~~l~~~~~~~gv~~~~~~-v~~i~~~~--~~~~v~~-~~-----~~~~~~~vv~A~G--~~~~~~~~~g~~~~~~~~~ 140 (333)
T 1vdc_A 72 LTDKFRKQSERFGTTIFTET-VTKVDFSS--KPFKLFT-DS-----KAILADAVILAIG--AVAKRLSFVGSGEVLGGFW 140 (333)
T ss_dssp HHHHHHHHHHHTTCEEECCC-CCEEECSS--SSEEEEC-SS-----EEEEEEEEEECCC--EEECCCCCBTCSSSSSCCB
T ss_pred HHHHHHHHHHHCCCEEEEeE-EEEEEEcC--CEEEEEE-CC-----cEEEcCEEEECCC--CCcCCCCCCCccccccccc
Confidence 88999998999999988876 88888765 6677776 43 6899999999999 5677788888765 43
Q ss_pred ccEeecCCCCCCCC--CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHH
Q 013435 186 GPIFHSSSYKTGEL--FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRL 263 (443)
Q Consensus 186 ~~~~~~~~~~~~~~--~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 263 (443)
+..++.+...+... ..+++|+|||+|.+|+|+|..|.+.+.+|+++.|++. +.+.. .+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~-~~~~~-------------------~~ 200 (333)
T 1vdc_A 141 NRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA-FRASK-------------------IM 200 (333)
T ss_dssp TTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS-CCSCH-------------------HH
T ss_pred cCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCc-CCccH-------------------HH
Confidence 34455443333322 5689999999999999999999999999999998873 11100 00
Q ss_pred HHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc-------EEEc
Q 013435 264 VDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA-------AEFI 334 (443)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~-------v~~~ 334 (443)
. .+.+++.+|+++.+ +.++..++ +.+.
T Consensus 201 ~--------------------------------------------~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~ 236 (333)
T 1vdc_A 201 Q--------------------------------------------QRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVK 236 (333)
T ss_dssp H--------------------------------------------HHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEE
T ss_pred H--------------------------------------------HHHHhCCCeeEecCCceEEEeCCCCccceeeEEEE
Confidence 0 01123457777765 66665432 6665
Q ss_pred ---CC--cEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHH
Q 013435 335 ---DG--SIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRI 405 (443)
Q Consensus 335 ---~g--~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~ 405 (443)
+| +++++|.||+|+|++|++ .++. .++..+++|++.+|...++++.|+|||+|||+.. ...|..+|+.+
T Consensus 237 ~~~~g~~~~i~~D~vi~a~G~~p~~-~~~~-~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~a 314 (333)
T 1vdc_A 237 NVVTGDVSDLKVSGLFFAIGHEPAT-KFLD-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMA 314 (333)
T ss_dssp ETTTCCEEEEECSEEEECSCEEESC-GGGT-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHH
T ss_pred ecCCCceEEEecCEEEEEeCCccch-HHhh-ccccccCCCCEEechhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHH
Confidence 45 468999999999999998 5554 3566677899999955578999999999999864 33678899999
Q ss_pred HHHHHHhhHHH
Q 013435 406 SEDIEHQWNSE 416 (443)
Q Consensus 406 a~~i~~~l~~~ 416 (443)
|.+|...+...
T Consensus 315 a~~i~~~l~~~ 325 (333)
T 1vdc_A 315 ALDAEHYLQEI 325 (333)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999988643
No 24
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=100.00 E-value=3e-34 Score=271.70 Aligned_cols=290 Identities=19% Similarity=0.291 Sum_probs=212.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
.+||+|||||++|+++|..|++.|++++++|+. .+||.|..... ...++. ++......++.++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~------~~~~~~~~~~~~~ 67 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE----------VENWPG------DPNDLTGPLLMER 67 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGGGCSB----------CCCSTT------CCSSCBHHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEecchh----------hhhCCC------CCCCCCHHHHHHH
Confidence 478999999999999999999999999999975 57776643210 001111 1112356788899
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSS 193 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~ 193 (443)
+.+.+.+.+++++.++ |+.++... +.|.+ +.++ ..+.||+||+||| +.|..|.+||.+.+.+..++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~-v~~i~~~~--~~~~v-~~~~-----~~~~~~~lv~AtG--~~~~~~~~~g~~~~~~~~~~~~~ 136 (320)
T 1trb_A 68 MHEHATKFETEIIFDH-INKVDLQN--RPFRL-NGDN-----GEYTCDALIIATG--ASARYLGLPSEEAFKGRGVSACA 136 (320)
T ss_dssp HHHHHHHTTCEEECCC-EEEEECSS--SSEEE-EESS-----CEEEEEEEEECCC--EEECCCCCHHHHHTBTTTEESCH
T ss_pred HHHHHHHCCCEEEEee-eeEEEecC--CEEEE-EeCC-----CEEEcCEEEECCC--CCcCCCCCCChHHhCCceeEecc
Confidence 9999999999988886 88888765 66777 4443 5799999999999 56777888876544333455443
Q ss_pred CCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHH
Q 013435 194 YKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSW 273 (443)
Q Consensus 194 ~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (443)
..+.....+++|+|||+|.+|+|+|..|.+.|.+|+++.|++... +.. .+.+
T Consensus 137 ~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~-------------------~~~~-------- 188 (320)
T 1trb_A 137 TSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-AEK-------------------ILIK-------- 188 (320)
T ss_dssp HHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC-CCH-------------------HHHH--------
T ss_pred cCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc-cCH-------------------HHHH--------
Confidence 333334568999999999999999999999999999999887321 100 0111
Q ss_pred HHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc-----EEEcC----C--cEEc
Q 013435 274 LMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA-----AEFID----G--SIEN 340 (443)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~-----v~~~~----g--~~~~ 340 (443)
.+.+.+.+.+|+++.+ +.++..++ +.+.+ | .+++
T Consensus 189 ---------------------------------~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~ 235 (320)
T 1trb_A 189 ---------------------------------RLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLD 235 (320)
T ss_dssp ---------------------------------HHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEE
T ss_pred ---------------------------------HHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEE
Confidence 1123344567887766 66665443 67754 4 4789
Q ss_pred ccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCC----CCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHh
Q 013435 341 YDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPN----GWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 341 ~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~----~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~ 412 (443)
+|.||+|+|++|++ .++. .++..+ +|++.+|..+ ++++.|+||++|||+.. ...|..+|+.+|.+|...
T Consensus 236 ~D~vv~a~G~~p~~-~~~~-~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 312 (320)
T 1trb_A 236 VAGLFVAIGHSPNT-AIFE-GQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERY 312 (320)
T ss_dssp CSEEEECSCEEESC-GGGT-TTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCEEEEEeCCCCCh-HHhc-cccccc-CceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHHH
Confidence 99999999999997 5554 456666 8999999432 47899999999999864 336888999999999998
Q ss_pred hHH
Q 013435 413 WNS 415 (443)
Q Consensus 413 l~~ 415 (443)
+..
T Consensus 313 l~~ 315 (320)
T 1trb_A 313 LDG 315 (320)
T ss_dssp HTC
T ss_pred HHh
Confidence 854
No 25
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=1.6e-33 Score=272.19 Aligned_cols=309 Identities=17% Similarity=0.202 Sum_probs=211.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCCceeeecCC---ccccCCCCCC--CCC------C
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYDRLRLHLPK---QFCQLPLMPF--PSN------F 101 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~---~~~~~~~~~~--~~~------~ 101 (443)
.+||+|||||++|+++|..|++.|. +|+|||+.+ +||.|...... .....+. ..+.+..... +.. .
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 81 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKS-TRTITPSFTSNGFGMPDMNAISMDTSPAFTFN 81 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTT-CBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCccc-ccccCcchhcccCCchhhhhcccccccccccc
Confidence 3689999999999999999999999 999999998 99988652111 1111110 1111111100 000 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCC
Q 013435 102 PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGM 181 (443)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~ 181 (443)
..++...++..++.++++++++++++++.|++++..+ +.|.|.+.+ .++.||+||+|||.++.| .+|+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~------g~~~~d~vVlAtG~~~~p---~ip~- 149 (369)
T 3d1c_A 82 EEHISGETYAEYLQVVANHYELNIFENTVVTNISADD--AYYTIATTT------ETYHADYIFVATGDYNFP---KKPF- 149 (369)
T ss_dssp CSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SSEEEEESS------CCEEEEEEEECCCSTTSB---CCCS-
T ss_pred ccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECC--CeEEEEeCC------CEEEeCEEEECCCCCCcc---CCCC-
Confidence 2346778899999999999999999999999999876 567787765 358999999999975544 4444
Q ss_pred CCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchh
Q 013435 182 DGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPV 261 (443)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~ 261 (443)
+..+|+..+.+....++++|+|||+|.+|+|+|..|.+.|.+|+++.|++....|..+. .. .++.
T Consensus 150 ----~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~-----~~------~~~~ 214 (369)
T 3d1c_A 150 ----KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADP-----SV------RLSP 214 (369)
T ss_dssp ----SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------C-----TT------SCCH
T ss_pred ----CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCC-----Cc------cCCH
Confidence 23466666655555678899999999999999999999999999999988422121110 00 0111
Q ss_pred HHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCC-CeEEecC--CcEE--eCC--cEEEc
Q 013435 262 RLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSG-NIKVCRA--IKRL--THH--AAEFI 334 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~--v~~~--~~~--~v~~~ 334 (443)
...+. +.+.+.+. +|+++.+ +.++ ..+ .+.+.
T Consensus 215 ~~~~~-----------------------------------------l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~ 253 (369)
T 3d1c_A 215 YTRQR-----------------------------------------LGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFD 253 (369)
T ss_dssp HHHHH-----------------------------------------HHHHHHTTCCEEEECSCCEEEEEEETTEEEEEES
T ss_pred HHHHH-----------------------------------------HHHHHhhCCcEEEecCcEEEEEEecCCceEEEec
Confidence 11111 12233345 3888766 6666 333 36678
Q ss_pred CCcEEc-ccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCcc-------cchHHHHHHH
Q 013435 335 DGSIEN-YDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGLL-------GASIDARRIS 406 (443)
Q Consensus 335 ~g~~~~-~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~~-------~a~~~a~~~a 406 (443)
+|+++. +|.||+|||++|++ .++.+..+. +++|++.++...++++.|+||++||++.... .+..||+.+|
T Consensus 254 ~g~~~~~~d~vi~a~G~~~~~-~~~~~~~~~-~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a 331 (369)
T 3d1c_A 254 SGQSVHTPHEPILATGFDATK-NPIVQQLFV-TTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLA 331 (369)
T ss_dssp SSCCEEESSCCEECCCBCGGG-SHHHHHHSC-CTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHH
T ss_pred CCeEeccCCceEEeeccCCcc-chhhhhhcc-CCCCCEEechhhcccCCCCeEEeccccccCCeeEEEEehhhHHHHHHH
Confidence 888765 69999999999997 455444454 5789999996667889999999999875311 3456789999
Q ss_pred HHHHHhhH
Q 013435 407 EDIEHQWN 414 (443)
Q Consensus 407 ~~i~~~l~ 414 (443)
++|.+.+.
T Consensus 332 ~~l~~~~~ 339 (369)
T 3d1c_A 332 HLLTQREG 339 (369)
T ss_dssp HHHHHHTT
T ss_pred HHHhcccC
Confidence 99988764
No 26
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=100.00 E-value=4.3e-33 Score=280.10 Aligned_cols=291 Identities=20% Similarity=0.249 Sum_probs=221.5
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
....+||+|||||++|+++|..|++.|++++++|+ .+||.|.... .+ ..+... .+....++
T Consensus 209 ~~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~--~~--------~~~~~~-------~~~~~~~l 269 (521)
T 1hyu_A 209 KRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTV--DI--------ENYISV-------PKTEGQKL 269 (521)
T ss_dssp TSCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCS--CB--------CCBTTB-------SSBCHHHH
T ss_pred ccCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcccccc--cc--------cccCCC-------CCCCHHHH
Confidence 35678999999999999999999999999999986 4688775421 00 000000 12357888
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCC-CCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEe
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHL-SRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIF 189 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~ 189 (443)
..++.+.+.+++++++.+++|+.++.... .+.|.|++.++ ..++||+||+||| +.+..|.+||...+.+..+
T Consensus 270 ~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g-----~~~~~d~vVlAtG--~~~~~~~ipG~~~~~~~~v 342 (521)
T 1hyu_A 270 AGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASG-----AVLKARSIIIATG--AKWRNMNVPGEDQYRTKGV 342 (521)
T ss_dssp HHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTS-----CEEEEEEEEECCC--EEECCCCCTTTTTTTTTTE
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCC-----CEEEcCEEEECCC--CCcCCCCCCChhhhcCceE
Confidence 99999999999999999999999986431 24688887664 5799999999999 5667788999877666556
Q ss_pred ecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHH
Q 013435 190 HSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLL 269 (443)
Q Consensus 190 ~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (443)
+.+...+.....+++|+|||+|.+|+|+|..|+..+.+||++.|.+... +..
T Consensus 343 ~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~-~~~--------------------------- 394 (521)
T 1hyu_A 343 TYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK-ADQ--------------------------- 394 (521)
T ss_dssp ECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC-SCH---------------------------
T ss_pred EEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC-cCH---------------------------
Confidence 6666555555678999999999999999999999999999998887311 100
Q ss_pred HHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcC-CCeEEecC--CcEEeCC-----cEEEcC---Cc-
Q 013435 270 LMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRS-GNIKVCRA--IKRLTHH-----AAEFID---GS- 337 (443)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~--v~~~~~~-----~v~~~~---g~- 337 (443)
.+.+.+.+ .+|+++.+ ++++..+ ++.+.+ |+
T Consensus 395 -------------------------------------~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~ 437 (521)
T 1hyu_A 395 -------------------------------------VLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDI 437 (521)
T ss_dssp -------------------------------------HHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCE
T ss_pred -------------------------------------HHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCce
Confidence 01122333 47777776 6666543 355643 54
Q ss_pred -EEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHHHHh
Q 013435 338 -IENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 338 -~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~ 412 (443)
++++|.||+|+|+.|++ .++.+ .+..+++|++.+| ++++++.|+|||+|||+.. +..|+.+|+.+|.+|..+
T Consensus 438 ~~i~~D~vi~a~G~~pn~-~~l~~-~l~~~~~G~I~Vd-~~~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 514 (521)
T 1hyu_A 438 HSVALAGIFVQIGLLPNT-HWLEG-ALERNRMGEIIID-AKCETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDY 514 (521)
T ss_dssp EEEECSEEEECCCEEESC-GGGTT-TSCBCTTSCBCCC-TTCBCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCEEEECcCCCCCc-hHHhh-hhccCCCCcEEeC-CCCCCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHHH
Confidence 68999999999999998 56654 3666778999999 7788999999999999864 346889999999999998
Q ss_pred hHH
Q 013435 413 WNS 415 (443)
Q Consensus 413 l~~ 415 (443)
+.+
T Consensus 515 L~~ 517 (521)
T 1hyu_A 515 LIR 517 (521)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
No 27
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=100.00 E-value=2e-35 Score=290.83 Aligned_cols=293 Identities=18% Similarity=0.194 Sum_probs=205.2
Q ss_pred CCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
++|+|||||++|+++|..|++.| .+|+|||+++.++.... ..+. .+...............
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~--~l~~----------~~~~~~~~~~~~~~~~~----- 63 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC--ALPY----------VIGEVVEDRRYALAYTP----- 63 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG--GHHH----------HHTTSSCCGGGTBCCCH-----
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc--hhHH----------HHcCCccchhhhhhcCH-----
Confidence 47999999999999999999988 57999999875432110 0000 00000000000001112
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
.++.++.+++++.+++|+.++... .. +.......++...+.||+|||||| ++|+.|+++|...+....+..+
T Consensus 64 --~~~~~~~~i~~~~~~~V~~id~~~--~~--~~~~~~~~~~~~~~~yd~lVIATG--s~p~~p~i~g~~~~~~~~~~~~ 135 (437)
T 4eqs_A 64 --EKFYDRKQITVKTYHEVIAINDER--QT--VSVLNRKTNEQFEESYDKLILSPG--ASANSLGFESDITFTLRNLEDT 135 (437)
T ss_dssp --HHHHHHHCCEEEETEEEEEEETTT--TE--EEEEETTTTEEEEEECSEEEECCC--EEECCCCCCCTTEECCSSHHHH
T ss_pred --HHHHHhcCCEEEeCCeEEEEEccC--cE--EEEEeccCCceEEEEcCEEEECCC--CccccccccCceEEeeccHHHH
Confidence 234556789999999999998765 55 444443344447899999999999 6888888887543211111100
Q ss_pred CCCCC--CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHH
Q 013435 193 SYKTG--ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLL 270 (443)
Q Consensus 193 ~~~~~--~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (443)
...+. ....+++++|||+|.+|+|+|..+++.|.+||++.|.+ .++|..+.
T Consensus 136 ~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~ll~~~d~-------------------------- 188 (437)
T 4eqs_A 136 DAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSD-KINKLMDA-------------------------- 188 (437)
T ss_dssp HHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS-CCSTTSCG--------------------------
T ss_pred HHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeec-cccccccc--------------------------
Confidence 00000 11246899999999999999999999999999999988 44454321
Q ss_pred HHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCcEEEcCCcEEcccEEEEcc
Q 013435 271 MSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHAAEFIDGSIENYDAIILAT 348 (443)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~v~~~~g~~~~~D~vi~at 348 (443)
.......+.+.+.+|+++.+ ++++..+.+.+++|+++++|.||+|+
T Consensus 189 --------------------------------~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g~~~~~D~vl~a~ 236 (437)
T 4eqs_A 189 --------------------------------DMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGV 236 (437)
T ss_dssp --------------------------------GGGHHHHHHHHHTTCCEEESCCEEEEETTEEEETTSCEEECSEEEECC
T ss_pred --------------------------------hhHHHHHHHhhccceEEEeccEEEEecCCeeeecCCeEEeeeeEEEEe
Confidence 11112234444567777766 78888889999999999999999999
Q ss_pred CCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------------cccchHHHHHHHHHHHHhh
Q 013435 349 GYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------------LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 349 G~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------------~~~a~~~a~~~a~~i~~~l 413 (443)
|++||+ .++...++..+++|+|.+| ++++|+.|+|||+|||+.. ...|..||+.+|++|++.-
T Consensus 237 G~~Pn~-~~~~~~gl~~~~~G~I~vd-~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~ 312 (437)
T 4eqs_A 237 GTHPNS-KFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGND 312 (437)
T ss_dssp CEEESC-GGGTTSSCCCCTTSCEECC-TTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCT
T ss_pred ceecCc-HHHHhhhhhhccCCcEecC-CCccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCC
Confidence 999998 6777778888889999999 7889999999999999742 1146789999999998753
No 28
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=100.00 E-value=1.5e-32 Score=274.72 Aligned_cols=375 Identities=17% Similarity=0.179 Sum_probs=217.1
Q ss_pred cccccCcccccccccchh-----------hhhHhhhhcCCCeEEECCCHHHHHHHHHHHHcC--------------CCEE
Q 013435 7 LKEVEGKRVHDHFNNKKA-----------AISAARRIMVPGPVIVGAGPSGLATAACLTEKG--------------VPSL 61 (443)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~dvvIIG~G~aGl~~A~~l~~~g--------------~~v~ 61 (443)
|+++|-|...+++.+..+ ...+++...+|||||||+||+||++|..|.+.+ ...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~tp~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~ 80 (501)
T 4b63_A 1 MESVERKSESSYLGMRNMQPEQRLSLDPPRLRSTPQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKIC 80 (501)
T ss_dssp ----------------------------CCCCCCCTTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEE
T ss_pred CCccccccccCcccCccCCchhhccCCCCCCCCCCCCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCccee
Confidence 355666666666532111 112334466799999999999999999998753 3567
Q ss_pred EEecCCCCCcccccCC-CCceeeecCC--ccccC--CCC---------------CCCCCCCCCCCHHHHHHHHHHHHHHc
Q 013435 62 ILERANCIASLWQLKT-YDRLRLHLPK--QFCQL--PLM---------------PFPSNFPTYPTKQQFLTYLETYTNHF 121 (443)
Q Consensus 62 iie~~~~~gg~w~~~~-~~~~~~~~~~--~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (443)
++|+.+.++ |+..+ +++..++.+. .+..+ |.. +++.+...||++.++.+|++++++++
T Consensus 81 f~e~~~~f~--Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~ 158 (501)
T 4b63_A 81 FLERQKQFA--WHSGMLVPGSKMQISFIKDLATLRDPRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQF 158 (501)
T ss_dssp EEESSSSCC--SSGGGCCTTCBCSSCGGGSSSTTTCTTCTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTT
T ss_pred eEeccCCCC--cCCCCCCCCccccccchhhhccccCCCCccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHc
Confidence 888887775 76653 6666555431 11111 111 11223346789999999999999999
Q ss_pred CCccccceeEEEEEEeCCC------CeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecCCCC
Q 013435 122 GLDPVFNTTVVNAEYDHLS------RLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSSSYK 195 (443)
Q Consensus 122 ~~~v~~~~~V~~i~~~~~~------~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~ 195 (443)
+..++++++|++++..+.. +.|+|++.++..++..++.|+.||+||| ..|.+|. ...+.+.++|+..+.
T Consensus 159 ~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG--~~P~iP~---~~~~~g~v~Hss~y~ 233 (501)
T 4b63_A 159 SDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIG--GTAKMPS---GLPQDPRIIHSSKYC 233 (501)
T ss_dssp GGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCC--CEECCCT---TSCCCTTEEEGGGHH
T ss_pred CCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcC--CCCCCCC---CCCCCcceeeccccc
Confidence 8889999999999986532 3599999998878888999999999999 4555554 444567899999875
Q ss_pred C------CCCCCCCeEEEEccCCCHHHHHHHHhhc--CCccEEEEecCCccccccccCCCccchhhhhh---hhchhHHH
Q 013435 196 T------GELFRDKNVLVVGCGNSGMEVSLDLCNY--NARPSLVVRDTVHVLPQEMIGRSTFGLSMCLL---KWFPVRLV 264 (443)
Q Consensus 196 ~------~~~~~~~~v~ViG~G~~~~e~a~~l~~~--g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~---~~~~~~~~ 264 (443)
. ....++|+|+|||+|+||+|++..|++. +.+|+++.|++ .+.|....+....-...... ..++....
T Consensus 234 ~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~-~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r 312 (501)
T 4b63_A 234 TTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS-AMRPSDDSPFVNEIFNPERVDKFYSQSAAER 312 (501)
T ss_dssp HHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS-SCCBCCCCTTGGGGGSTTHHHHHHTSCHHHH
T ss_pred cchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC-ccccccccccchhhcCHHHHHHHHhCCHHHH
Confidence 4 4457899999999999999999999875 68899999998 44565443211000000000 01222222
Q ss_pred HHHHHHHHHHHhcCcc------------ccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecCCcEEeCCcEE
Q 013435 265 DQFLLLMSWLMLGDTS------------QFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRAIKRLTHHAAE 332 (443)
Q Consensus 265 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~v~ 332 (443)
.++.........+... +..+..|....+... ....... .........+.+++...+.+++.+++.
T Consensus 313 ~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~-l~~~~~v--~~~~~~~~~~~~~v~~~~~~~~~~~v~ 389 (501)
T 4b63_A 313 QRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHR-ILPERKI--TRVEHHGPQSRMRIHLKSSKPESEGAA 389 (501)
T ss_dssp HHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSE-EECSEEE--EEEECCSSSSCEEEEEEESCC------
T ss_pred HHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCccccccee-ecCCcce--eeeeecCCCCeEEEEeeeeEEeCCeeE
Confidence 2111111100000000 000000000000000 0000000 001111223456665555667778899
Q ss_pred EcCCcEEcccEEEEccCCCCCCCCCccCc--CcCccCCCCcCCCCCCCCc-------CCCceEEEeecc
Q 013435 333 FIDGSIENYDAIILATGYKSNVPYWLKDT--EMFSEKDGFPRMEFPNGWK-------GAHGLYAVGFNK 392 (443)
Q Consensus 333 ~~~g~~~~~D~vi~atG~~~~~~~~~~~~--~l~~~~~G~i~~~~~~~~~-------~~~~ifaiGd~~ 392 (443)
+.+|+++++|+||+||||+++.+.++... .+..+.+|.+.++++|... ..++||+.|.+.
T Consensus 390 ~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~ 458 (501)
T 4b63_A 390 NDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNE 458 (501)
T ss_dssp --CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCH
T ss_pred eCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecCCccCCCceEEecCCCc
Confidence 99999999999999999999975544443 4555677888888665432 347799998653
No 29
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=100.00 E-value=4.5e-34 Score=292.37 Aligned_cols=295 Identities=19% Similarity=0.250 Sum_probs=211.4
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCH
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTK 107 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (443)
+..+++||+|||||++|+++|..|++. |.+|+|+|+++.++ |....+ + ..+.... ....
T Consensus 32 ~~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~-------~~~~~l--p---~~~~g~~-------~~~~ 92 (588)
T 3ics_A 32 DRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS-------FANCGL--P---YYIGGVI-------TERQ 92 (588)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS-------BCGGGH--H---HHHTTSS-------CCGG
T ss_pred CcccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc-------ccCCCC--c---hhhcCcC-------CChH
Confidence 445678999999999999999999999 88999999998654 110000 0 0000000 0112
Q ss_pred HHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCccc
Q 013435 108 QQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGP 187 (443)
Q Consensus 108 ~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~ 187 (443)
..+..++.++.+++++.++++++|+.++... ..+.+.. ...++...+.||+||+||| +.|..|.+||.....+
T Consensus 93 ~~~~~~~~~~~~~~gi~v~~~~~V~~id~~~--~~v~v~~--~~~g~~~~~~~d~lviAtG--~~p~~p~i~G~~~~~~- 165 (588)
T 3ics_A 93 KLLVQTVERMSKRFNLDIRVLSEVVKINKEE--KTITIKN--VTTNETYNEAYDVLILSPG--AKPIVPSIPGIEEAKA- 165 (588)
T ss_dssp GGBSSCHHHHHHHTTCEEECSEEEEEEETTT--TEEEEEE--TTTCCEEEEECSEEEECCC--EEECCCCCTTTTTCTT-
T ss_pred HhhccCHHHHHHhcCcEEEECCEEEEEECCC--CEEEEee--cCCCCEEEEeCCEEEECCC--CCCCCCCCCCcccCCC-
Confidence 2344566777788899999999999998766 6655543 1122335899999999999 6888889998733222
Q ss_pred EeecCCCCCCC-------CCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhch
Q 013435 188 IFHSSSYKTGE-------LFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFP 260 (443)
Q Consensus 188 ~~~~~~~~~~~-------~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~ 260 (443)
++......+.. ...+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|....
T Consensus 166 v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~---------------- 228 (588)
T 3ics_A 166 LFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMAN-QVMPPIDY---------------- 228 (588)
T ss_dssp EEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCH----------------
T ss_pred eEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-cccccCCH----------------
Confidence 23322221111 1357899999999999999999999999999999888 44443210
Q ss_pred hHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--CcEEEcCC
Q 013435 261 VRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--HAAEFIDG 336 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~~v~~~~g 336 (443)
...+ .+.+.+++.+|+++.+ ++++.. +++.+.+|
T Consensus 229 -~~~~-----------------------------------------~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g 266 (588)
T 3ics_A 229 -EMAA-----------------------------------------YVHEHMKNHDVELVFEDGVDALEENGAVVRLKSG 266 (588)
T ss_dssp -HHHH-----------------------------------------HHHHHHHHTTCEEECSCCEEEEEGGGTEEEETTS
T ss_pred -HHHH-----------------------------------------HHHHHHHHcCCEEEECCeEEEEecCCCEEEECCC
Confidence 1111 1123344567777765 677765 56889999
Q ss_pred cEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC------C-------cccchHHHH
Q 013435 337 SIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR------G-------LLGASIDAR 403 (443)
Q Consensus 337 ~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~------~-------~~~a~~~a~ 403 (443)
+++++|.||+|+|+.|++ .++...++..+++|+|.+| ++++|+.|+|||+|||+. + ...|..||+
T Consensus 267 ~~i~~D~Vi~a~G~~p~~-~~l~~~g~~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~ 344 (588)
T 3ics_A 267 SVIQTDMLILAIGVQPES-SLAKGAGLALGVRGTIKVN-EKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGR 344 (588)
T ss_dssp CEEECSEEEECSCEEECC-HHHHHTTCCBCGGGCBCCC-TTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHH
T ss_pred CEEEcCEEEEccCCCCCh-HHHHhcCceEcCCCCEEEC-CccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHH
Confidence 999999999999999998 5666668877788999999 788899999999999973 1 124778999
Q ss_pred HHHHHHHH
Q 013435 404 RISEDIEH 411 (443)
Q Consensus 404 ~~a~~i~~ 411 (443)
.+|++|.+
T Consensus 345 ~aa~~i~g 352 (588)
T 3ics_A 345 MLADIIHG 352 (588)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 99999986
No 30
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=100.00 E-value=1.9e-32 Score=271.48 Aligned_cols=286 Identities=16% Similarity=0.160 Sum_probs=198.2
Q ss_pred CCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
+||+|||||++|+++|..|++. |.+|+|||+++.+|-.... . +.+.. .......++..
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~--~--------------~~~~~----~~~~~~~~~~~ 62 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGG--L--------------SAYFN----HTINELHEARY 62 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC------------------------------------CC
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCcc--c--------------hhhhc----CCCCCHHHhhc
Confidence 5899999999999999999999 8999999999876511100 0 00000 00001111111
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
...+...+.+++++++++|+.++... ..+.+.... +...+.||++|+||| +.|..|++||.+. ..+++..
T Consensus 63 ~~~~~~~~~gi~~~~~~~V~~id~~~--~~v~v~~~~----~~~~~~~d~lviAtG--~~p~~p~i~g~~~--~~v~~~~ 132 (452)
T 3oc4_A 63 ITEEELRRQKIQLLLNREVVAMDVEN--QLIAWTRKE----EQQWYSYDKLILATG--ASQFSTQIRGSQT--EKLLKYK 132 (452)
T ss_dssp CCHHHHHHTTEEEECSCEEEEEETTT--TEEEEEETT----EEEEEECSEEEECCC--CCBCCCCCBTTTC--TTEEEGG
T ss_pred CCHHHHHHCCCEEEECCEEEEEECCC--CEEEEEecC----ceEEEEcCEEEECCC--cccCCCCCCCCCC--CCEEEeC
Confidence 12344466788888999999998766 666664111 227899999999999 6888888998764 2233332
Q ss_pred CCCCCC-----CCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHH
Q 013435 193 SYKTGE-----LFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQF 267 (443)
Q Consensus 193 ~~~~~~-----~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (443)
...+.. ...+++++|||+|.+|+|+|..|.+.|.+||++.|.+ .++|... .....
T Consensus 133 ~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~----------------d~~~~--- 192 (452)
T 3oc4_A 133 FLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLE-NLLPKYF----------------DKEMV--- 192 (452)
T ss_dssp GCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTTC----------------CHHHH---
T ss_pred CHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-ccccccC----------------CHHHH---
Confidence 222211 2357899999999999999999999999999999988 3434210 11111
Q ss_pred HHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe--CCc--EEEcCCcEEcc
Q 013435 268 LLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT--HHA--AEFIDGSIENY 341 (443)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~--~~~--v~~~~g~~~~~ 341 (443)
..+.+.+++.+|+++.+ ++++. .++ +.++++ ++++
T Consensus 193 --------------------------------------~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~a 233 (452)
T 3oc4_A 193 --------------------------------------AEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISC 233 (452)
T ss_dssp --------------------------------------HHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEE
T ss_pred --------------------------------------HHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEe
Confidence 11234445667888776 66665 233 555555 8999
Q ss_pred cEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------------cccchHHHHHHHHH
Q 013435 342 DAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------------LLGASIDARRISED 408 (443)
Q Consensus 342 D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------------~~~a~~~a~~~a~~ 408 (443)
|.||+|+|++|++ .++... +..+++|+|.+| ++++|+.|+|||+|||+.. ...|..||+.+|++
T Consensus 234 D~Vv~A~G~~p~~-~~l~~~-~~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 310 (452)
T 3oc4_A 234 DSGIFALNLHPQL-AYLDKK-IQRNLDQTIAVD-AYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANN 310 (452)
T ss_dssp SEEEECSCCBCCC-SSCCTT-SCBCTTSCBCCC-TTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTS
T ss_pred CEEEECcCCCCCh-HHHHhh-hccCCCCCEEEC-cCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHH
Confidence 9999999999998 555543 666788999999 7889999999999999853 22577899999999
Q ss_pred HHHh
Q 013435 409 IEHQ 412 (443)
Q Consensus 409 i~~~ 412 (443)
|.+.
T Consensus 311 i~g~ 314 (452)
T 3oc4_A 311 LEEK 314 (452)
T ss_dssp SSSC
T ss_pred hcCC
Confidence 8764
No 31
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.4e-33 Score=277.73 Aligned_cols=295 Identities=15% Similarity=0.157 Sum_probs=195.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCC----ccccCCCCCCCCCCCCCCCHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPK----QFCQLPLMPFPSNFPTYPTKQ 108 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 108 (443)
.|||+|||||++|+++|..|++.|.+|+|||+.+.+||.|.+. +.+...+.... ....++.. .......
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~------~~~~~~~ 77 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANV------KIPLDFS 77 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCS------CCCCCHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccC------CCCcCHH
Confidence 4899999999999999999999999999999999999988652 11211100000 00000000 0111222
Q ss_pred HHH------------HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 109 QFL------------TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 109 ~~~------------~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
.+. .++....++.+++++.+ .+..++ . ..+.|...++ +..++.||+||+||| +.|..|
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id--~--~~~~V~~~~g---~~~~~~~d~lviAtG--~~p~~p 147 (466)
T 3l8k_A 78 TVQDRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKD--P--THVIVKTDEG---KEIEAETRYMIIASG--AETAKL 147 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEE--T--TEEEEEETTS---CEEEEEEEEEEECCC--EEECCC
T ss_pred HHHHHHHhheeccccchHHHHHHhCCCEEEEe-EEEEec--C--CeEEEEcCCC---cEEEEecCEEEECCC--CCccCC
Confidence 222 23333444456665555 466554 2 5666766543 223499999999999 688888
Q ss_pred CCCCCCCCcccEeecCC---CCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhh
Q 013435 177 YIEGMDGFRGPIFHSSS---YKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSM 253 (443)
Q Consensus 177 ~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~ 253 (443)
.+||.+. +++..+ ........+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ .++|...
T Consensus 148 ~i~G~~~----~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~---------- 212 (466)
T 3l8k_A 148 RLPGVEY----CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLD-RALITLE---------- 212 (466)
T ss_dssp CCTTGGG----SBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSC----------
T ss_pred CCCCccc----eEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC-cCCCCCC----------
Confidence 8888662 121111 111223357899999999999999999999999999999988 3444320
Q ss_pred hhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC---
Q 013435 254 CLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--- 328 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--- 328 (443)
.....+.+. +.+. |+++.+ +.++..
T Consensus 213 ------d~~~~~~l~-----------------------------------------~~l~---v~i~~~~~v~~i~~~~~ 242 (466)
T 3l8k_A 213 ------DQDIVNTLL-----------------------------------------SILK---LNIKFNSPVTEVKKIKD 242 (466)
T ss_dssp ------CHHHHHHHH-----------------------------------------HHHC---CCEECSCCEEEEEEEET
T ss_pred ------CHHHHHHHH-----------------------------------------hcCE---EEEEECCEEEEEEEcCC
Confidence 111111111 1111 444443 444443
Q ss_pred Cc--EEEc--CCc--EEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccc
Q 013435 329 HA--AEFI--DGS--IENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGA 398 (443)
Q Consensus 329 ~~--v~~~--~g~--~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a 398 (443)
++ +.+. +|+ ++++|.||+|+|++|++. + +...++..+++| +.+| ++++++.|+|||+|||+.. ...|
T Consensus 243 ~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~~~G-i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A 319 (466)
T 3l8k_A 243 DEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP-EGAREIGLSISKTG-IVVD-ETMKTNIPNVFATGDANGLAPYYHAA 319 (466)
T ss_dssp TEEEEEECCTTSCCEEEEESCEEECCCEEECCC-TTTGGGTCCBCSSS-BCCC-TTCBCSSTTEEECGGGTCSCCSHHHH
T ss_pred CcEEEEEEecCCceEEEEcCEEEECcCCCcccc-cchhhcCceeCCCC-EeEC-CCccCCCCCEEEEEecCCCCccHhHH
Confidence 22 4555 565 799999999999999985 5 566688888889 9999 7888999999999999874 2367
Q ss_pred hHHHHHHHHHHHHh
Q 013435 399 SIDARRISEDIEHQ 412 (443)
Q Consensus 399 ~~~a~~~a~~i~~~ 412 (443)
..||+.+|++|.+.
T Consensus 320 ~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 320 VRMSIAAANNIMAN 333 (466)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 89999999999864
No 32
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=100.00 E-value=3.6e-33 Score=279.09 Aligned_cols=306 Identities=14% Similarity=0.139 Sum_probs=200.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHH-cCCCEEEEe--------cCCCCCccccc-CCCCceeeecCCc----cccCCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTE-KGVPSLILE--------RANCIASLWQL-KTYDRLRLHLPKQ----FCQLPLMPFP 98 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~-~g~~v~iie--------~~~~~gg~w~~-~~~~~~~~~~~~~----~~~~~~~~~~ 98 (443)
+.|||+|||||++|+++|..|++ .|.+|+||| +...+||+|.+ .+.|...+..... ......+.+.
T Consensus 6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~ 85 (495)
T 2wpf_A 6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWE 85 (495)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcc
Confidence 35899999999999999999999 999999999 35578888764 2222211100000 0000011100
Q ss_pred CCCC-CCCCHHHHHHHH-----------HHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCC---CcEEEEEeCE
Q 013435 99 SNFP-TYPTKQQFLTYL-----------ETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLK---QEETVYLCQW 162 (443)
Q Consensus 99 ~~~~-~~~~~~~~~~~l-----------~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~---~~~~~i~a~~ 162 (443)
.... .......+..+. ...+++. +++++.++ +..++ . .. |.+.+... +....+.||+
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~--~--~~--v~v~~~~~~~~~~~~~~~~d~ 158 (495)
T 2wpf_A 86 FDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGW-GSLES--K--NV--VVVRETADPKSAVKERLQADH 158 (495)
T ss_dssp CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESE-EEEEE--T--TE--EEEESSSSTTSCEEEEEEEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeE-EEEee--C--CE--EEEeecCCccCCCCeEEEcCE
Confidence 0000 011233333332 2233455 77776664 54443 2 33 55441100 0016899999
Q ss_pred EEEccCCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhc---CCccEEEEecCCccc
Q 013435 163 LIVATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNY---NARPSLVVRDTVHVL 239 (443)
Q Consensus 163 vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~---g~~Vt~i~r~~~~~l 239 (443)
||+||| +.|..|.+||.+. +++..+... ....+++++|||+|.+|+|+|..|.+. |.+||++.|.+ .++
T Consensus 159 lViATG--s~p~~p~i~G~~~----~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~-~~l 230 (495)
T 2wpf_A 159 ILLATG--SWPQMPAIPGIEH----CISSNEAFY-LPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNN-LIL 230 (495)
T ss_dssp EEECCC--EEECCCCCTTGGG----CEEHHHHTT-CSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS-SSC
T ss_pred EEEeCC--CCcCCCCCCCccc----cccHHHHHh-hhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCC-ccc
Confidence 999999 6888888888642 233322222 223478999999999999999999999 99999999988 444
Q ss_pred cccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEE
Q 013435 240 PQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKV 319 (443)
Q Consensus 240 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 319 (443)
|..+. ...+ .+.+.+++.+|++
T Consensus 231 ~~~d~-----------------~~~~-----------------------------------------~l~~~l~~~GV~i 252 (495)
T 2wpf_A 231 RGFDE-----------------TIRE-----------------------------------------EVTKQLTANGIEI 252 (495)
T ss_dssp TTSCH-----------------HHHH-----------------------------------------HHHHHHHHTTCEE
T ss_pred cccCH-----------------HHHH-----------------------------------------HHHHHHHhCCCEE
Confidence 43211 1111 1123334456777
Q ss_pred ecC--CcEEeCC-----cEEEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeec
Q 013435 320 CRA--IKRLTHH-----AAEFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFN 391 (443)
Q Consensus 320 ~~~--v~~~~~~-----~v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~ 391 (443)
+.+ +.++..+ .+.+.+|+++++|.||+|+|++|++..+ +...++..+++|+|.+| ++++|+.|+|||+|||
T Consensus 253 ~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~ 331 (495)
T 2wpf_A 253 MTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVD-EFSRTNVPNIYAIGDI 331 (495)
T ss_dssp EESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCC-TTCBCSSTTEEECGGG
T ss_pred EeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEEC-CCCccCCCCEEEEecc
Confidence 665 5666532 3677888899999999999999998434 45568877778999999 7788999999999999
Q ss_pred cCCc---ccchHHHHHHHHHHHHh
Q 013435 392 KRGL---LGASIDARRISEDIEHQ 412 (443)
Q Consensus 392 ~~~~---~~a~~~a~~~a~~i~~~ 412 (443)
+... ..|..||+.+|.+|.+.
T Consensus 332 ~~~~~l~~~A~~~g~~aa~~i~g~ 355 (495)
T 2wpf_A 332 TDRLMLTPVAINEGAALVDTVFGN 355 (495)
T ss_dssp GCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CCCccCHHHHHHHHHHHHHHhcCC
Confidence 8642 26788999999999863
No 33
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=100.00 E-value=1.3e-34 Score=279.87 Aligned_cols=277 Identities=18% Similarity=0.208 Sum_probs=195.1
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
++....+|+|||||++|+++|..|...+.+|+|||+++.++ |....+. .. +. +....++
T Consensus 5 ~~~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~-------y~~~~l~--~~---l~---------g~~~~~~ 63 (385)
T 3klj_A 5 HHHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP-------YYRPRLN--EI---IA---------KNKSIDD 63 (385)
T ss_dssp ---CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC-------BCGGGHH--HH---HH---------SCCCGGG
T ss_pred cccCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC-------cccChhh--HH---Hc---------CCCCHHH
Confidence 45667789999999999999999977789999999988654 1111000 00 00 0011122
Q ss_pred HHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEe
Q 013435 110 FLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIF 189 (443)
Q Consensus 110 ~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~ 189 (443)
+..+..++.++.+++++++++|++++... .. |++.++ .++.||+||+||| +.|+.|++||.+ .++
T Consensus 64 l~~~~~~~~~~~~i~~~~~~~V~~id~~~--~~--v~~~~g-----~~~~yd~lvlAtG--~~p~~p~i~G~~----~v~ 128 (385)
T 3klj_A 64 ILIKKNDWYEKNNIKVITSEFATSIDPNN--KL--VTLKSG-----EKIKYEKLIIASG--SIANKIKVPHAD----EIF 128 (385)
T ss_dssp TBSSCHHHHHHTTCEEECSCCEEEEETTT--TE--EEETTS-----CEEECSEEEECCC--EEECCCCCTTCS----CEE
T ss_pred ccCCCHHHHHHCCCEEEeCCEEEEEECCC--CE--EEECCC-----CEEECCEEEEecC--CCcCCCCCCCCC----CeE
Confidence 22233445567799999999999998765 43 666665 6899999999999 688888899876 122
Q ss_pred ecCCCCCCCC-----CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHH
Q 013435 190 HSSSYKTGEL-----FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLV 264 (443)
Q Consensus 190 ~~~~~~~~~~-----~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 264 (443)
+.....+... ..+++|+|||+|.+|+|+|..|++.|.+||++.+.+ .++|... .....
T Consensus 129 ~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~-~~l~~~~----------------~~~~~ 191 (385)
T 3klj_A 129 SLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILE-YPLERQL----------------DRDGG 191 (385)
T ss_dssp CCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS-SSCTTTS----------------CHHHH
T ss_pred EeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC-ccchhhc----------------CHHHH
Confidence 2222222111 126899999999999999999999999999999988 3444321 11111
Q ss_pred HHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCcEEEcCCcEEccc
Q 013435 265 DQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHAAEFIDGSIENYD 342 (443)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~v~~~~g~~~~~D 342 (443)
+ .+.+.+++.+|+++.+ +.++ |+++++|
T Consensus 192 ~-----------------------------------------~~~~~l~~~gV~~~~~~~v~~i---------g~~~~~D 221 (385)
T 3klj_A 192 L-----------------------------------------FLKDKLDRLGIKIYTNSNFEEM---------GDLIRSS 221 (385)
T ss_dssp H-----------------------------------------HHHHHHHTTTCEEECSCCGGGC---------HHHHHHS
T ss_pred H-----------------------------------------HHHHHHHhCCCEEEeCCEEEEc---------CeEEecC
Confidence 1 1123344567887765 4443 6678999
Q ss_pred EEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------cccchHHHHHHHHHHHHhh
Q 013435 343 AIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 343 ~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------~~~a~~~a~~~a~~i~~~l 413 (443)
.||+|+|++|++ .++...++.. ++| +.+| ++++++.|+|||+|||+.. ...|..||+.+|.+|.+..
T Consensus 222 ~vv~a~G~~p~~-~~~~~~gl~~-~~g-i~vd-~~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~ 295 (385)
T 3klj_A 222 CVITAVGVKPNL-DFIKDTEIAS-KRG-ILVN-DHMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED 295 (385)
T ss_dssp EEEECCCEEECC-GGGTTSCCCB-SSS-EEEC-TTCBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred eEEECcCcccCh-hhhhhcCCCc-CCC-EEEC-CCcccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCC
Confidence 999999999998 6777778866 456 8888 7888999999999999751 2357889999999998753
No 34
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=99.98 E-value=2.5e-33 Score=280.70 Aligned_cols=307 Identities=18% Similarity=0.178 Sum_probs=198.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCCccc-----cCCCCCCCCCCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPKQFC-----QLPLMPFPSNFPTYPT 106 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 106 (443)
+.|||+|||||++|+++|..|++.|.+|+|||+.+.+||+|.+. +++...+......+ .+.......... ...
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~ 102 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANP-KLN 102 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCC-EEC
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCC-ccC
Confidence 45899999999999999999999999999999998999987642 22221111000000 001000000000 011
Q ss_pred HHHH-----------HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 107 KQQF-----------LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 107 ~~~~-----------~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
...+ ...+....++.++++..+..+ .+ + ...+.|...+ ++..++.||+||+|||. .|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~--~--~~~~~v~~~~---g~~~~~~~d~lViATGs--~p-- 170 (491)
T 3urh_A 103 LQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGK-VL--G--QGKVSVTNEK---GEEQVLEAKNVVIATGS--DV-- 170 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EC--S--SSEEEEECTT---SCEEEEECSEEEECCCE--EC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ee--c--CCEEEEEeCC---CceEEEEeCEEEEccCC--CC--
Confidence 2222 222334455567766555422 11 1 2555565433 23468999999999994 43
Q ss_pred CCCCCCCC-CcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhh
Q 013435 176 PYIEGMDG-FRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMC 254 (443)
Q Consensus 176 p~~~g~~~-~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~ 254 (443)
+.+||... +.+..++++.........+++++|||+|.+|+|+|..|.+.|.+||++.+.+ .++|...
T Consensus 171 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d----------- 238 (491)
T 3urh_A 171 AGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLD-TILGGMD----------- 238 (491)
T ss_dssp CCBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS-SSSSSSC-----------
T ss_pred CCCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccc-cccccCC-----------
Confidence 35666542 2233344444333444568999999999999999999999999999999888 3444221
Q ss_pred hhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC--c
Q 013435 255 LLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH--A 330 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~--~ 330 (443)
....+ .+.+.+++.+|+++.+ +.++..+ +
T Consensus 239 ------~~~~~-----------------------------------------~l~~~l~~~gV~v~~~~~v~~i~~~~~~ 271 (491)
T 3urh_A 239 ------GEVAK-----------------------------------------QLQRMLTKQGIDFKLGAKVTGAVKSGDG 271 (491)
T ss_dssp ------HHHHH-----------------------------------------HHHHHHHHTTCEEECSEEEEEEEEETTE
T ss_pred ------HHHHH-----------------------------------------HHHHHHHhCCCEEEECCeEEEEEEeCCE
Confidence 11111 1123344556777665 5555432 2
Q ss_pred --EEEcC---C--cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccch
Q 013435 331 --AEFID---G--SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGAS 399 (443)
Q Consensus 331 --v~~~~---g--~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~ 399 (443)
+.+.+ | +++++|.||+|+|++|++..+ +...++..+++|++.+| ++++|+.|+|||+|||+.. ...|.
T Consensus 272 ~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~A~ 350 (491)
T 3urh_A 272 AKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEID-RHFQTSIAGVYAIGDVVRGPMLAHKAE 350 (491)
T ss_dssp EEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCC-TTCBCSSTTEEECGGGSSSCCCHHHHH
T ss_pred EEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeEC-CCCCCCCCCEEEEEecCCCccchhHHH
Confidence 44442 4 579999999999999998434 44457877788999999 7788999999999999854 33678
Q ss_pred HHHHHHHHHHHHh
Q 013435 400 IDARRISEDIEHQ 412 (443)
Q Consensus 400 ~~a~~~a~~i~~~ 412 (443)
.+|+.+|++|.+.
T Consensus 351 ~~g~~aa~~i~g~ 363 (491)
T 3urh_A 351 DEGVAVAEIIAGQ 363 (491)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCC
Confidence 8999999999874
No 35
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.98 E-value=5.6e-33 Score=278.36 Aligned_cols=301 Identities=14% Similarity=0.178 Sum_probs=191.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecC----CccccCCCCCCCCCCCCCCCHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLP----KQFCQLPLMPFPSNFPTYPTKQ 108 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 108 (443)
.|||+|||||++|+++|..|++.|.+|+|||+.. +||+|.+. +.+...+... ........+.+... ......
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~ 78 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTK--FSFNLP 78 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCC--CCCCHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccC--CccCHH
Confidence 5899999999999999999999999999999984 88887642 1121100000 00000000011000 011222
Q ss_pred H-----------HHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEee------cCCCcEEEEEeCEEEEccCCCC
Q 013435 109 Q-----------FLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQ------GLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 109 ~-----------~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~------~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
. +...+...+++.+++++.++. ..++. ..+.+.... ...+...++.||+||+||| +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~id~----~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtG--s 151 (500)
T 1onf_A 79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTA-SFLSE----NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVG--N 151 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCC-CCC------------------------------CBSSEEECCC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEeeC----CEEEEEeccccccccccCCCceEEEeCEEEECCC--C
Confidence 2 222334455667888766642 22321 233332200 0000115799999999999 6
Q ss_pred CCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccch
Q 013435 172 EEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGL 251 (443)
Q Consensus 172 ~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~ 251 (443)
.|..|++||.+. .++..+...... +++++|||+|.+|+|+|..|++.|.+||++.|.+ .++|..+.
T Consensus 152 ~p~~p~i~G~~~----~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~------- 217 (500)
T 1onf_A 152 KPVFPPVKGIEN----TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN-RILRKFDE------- 217 (500)
T ss_dssp CBCCCSCTTGGG----CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS-SSCTTSCH-------
T ss_pred CCCCCCCCCCCc----ccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCC-ccCcccch-------
Confidence 788888888642 233332222222 7899999999999999999999999999999988 44443211
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC
Q 013435 252 SMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH 329 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~ 329 (443)
...+ .+.+.+++.+|+++.+ ++++..+
T Consensus 218 ----------~~~~-----------------------------------------~l~~~l~~~gv~i~~~~~v~~i~~~ 246 (500)
T 1onf_A 218 ----------SVIN-----------------------------------------VLENDMKKNNINIVTFADVVEIKKV 246 (500)
T ss_dssp ----------HHHH-----------------------------------------HHHHHHHHTTCEEECSCCEEEEEES
T ss_pred ----------hhHH-----------------------------------------HHHHHHHhCCCEEEECCEEEEEEEc
Confidence 1111 1123344557777766 6666532
Q ss_pred -----cEEEcCCcE-EcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeecc----------
Q 013435 330 -----AAEFIDGSI-ENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNK---------- 392 (443)
Q Consensus 330 -----~v~~~~g~~-~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~---------- 392 (443)
.+.+.+|++ +++|.||+|+|++|+++.+ +...++.. ++|+|.+| ++++|+.|+|||+|||+
T Consensus 247 ~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~~~ 324 (500)
T 1onf_A 247 SDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVD-ENQRTSVNNIYAVGDCCMVKKSKEIED 324 (500)
T ss_dssp STTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEEC-TTCBCSSSSEEECSTTEEEC-------
T ss_pred CCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEEC-CCcccCCCCEEEEeccccccccccccc
Confidence 366778887 9999999999999998545 56668877 78999999 67789999999999998
Q ss_pred ------------------------CC---cccchHHHHHHHHHHHH
Q 013435 393 ------------------------RG---LLGASIDARRISEDIEH 411 (443)
Q Consensus 393 ------------------------~~---~~~a~~~a~~~a~~i~~ 411 (443)
.. ...|..||+.+|++|.+
T Consensus 325 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g 370 (500)
T 1onf_A 325 LNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFL 370 (500)
T ss_dssp -----------------------CBCCCCHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhC
Confidence 11 11477899999999986
No 36
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=99.98 E-value=6.3e-33 Score=276.63 Aligned_cols=307 Identities=13% Similarity=0.073 Sum_probs=202.3
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCCc----cc--cCCCCCCCCCCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPKQ----FC--QLPLMPFPSNFPTY 104 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~ 104 (443)
.+.+||+|||||++|+++|..|++.|.+|+|||+++.+||.|.+. +.+...+..... .. .+.....+.. ...
T Consensus 4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~-~~~ 82 (474)
T 1zmd_A 4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMS-EVR 82 (474)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEES-CEE
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccC-CCc
Confidence 345899999999999999999999999999999998899988642 111110000000 00 0000000000 000
Q ss_pred CCHHHHH-----------HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 105 PTKQQFL-----------TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 105 ~~~~~~~-----------~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
.....+. ..+...+++.+++++.++.+ .+ +. ..+.|.+.++ +..++.||+||+||| +.|
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~~~v~~~~g---g~~~~~~d~lViAtG--s~p 152 (474)
T 1zmd_A 83 LNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK-IT--GK--NQVTATKADG---GTQVIDTKNILIATG--SEV 152 (474)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EE--ET--TEEEEECTTS---CEEEEEEEEEEECCC--EEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ee--cC--CEEEEEecCC---CcEEEEeCEEEECCC--CCC
Confidence 1122222 22345566778888777643 33 23 5666665431 125799999999999 678
Q ss_pred ccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCcccc-ccccCCCccchh
Q 013435 174 VVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLP-QEMIGRSTFGLS 252 (443)
Q Consensus 174 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp-~~~~~~~~~~~~ 252 (443)
..|+++|.+.. .++++.+.... ...+++++|||+|.+|+|+|..|.+.|.+||++.+++ .++| ...
T Consensus 153 ~~p~i~g~~~~--~v~t~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~--------- 219 (474)
T 1zmd_A 153 TPFPGITIDED--TIVSSTGALSL-KKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLG-HVGGVGID--------- 219 (474)
T ss_dssp CCCTTCCCCSS--SEECHHHHTTC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSCSSCC---------
T ss_pred CCCCCCCCCcC--cEEcHHHHhhc-cccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccC-ccCCcccC---------
Confidence 88888886531 23433332222 2246899999999999999999999999999999988 4445 211
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC-
Q 013435 253 MCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH- 329 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~- 329 (443)
....+. +.+.+++.+|+++.+ +.++..+
T Consensus 220 --------~~~~~~-----------------------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~ 250 (474)
T 1zmd_A 220 --------MEISKN-----------------------------------------FQRILQKQGFKFKLNTKVTGATKKS 250 (474)
T ss_dssp --------HHHHHH-----------------------------------------HHHHHHHTTCEEECSEEEEEEEECT
T ss_pred --------HHHHHH-----------------------------------------HHHHHHHCCCEEEeCceEEEEEEcC
Confidence 111111 123334456777766 6666532
Q ss_pred -c-EEE-------cCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---c
Q 013435 330 -A-AEF-------IDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---L 396 (443)
Q Consensus 330 -~-v~~-------~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~ 396 (443)
+ +.+ .+++++++|.||+|+|++|++..+ +...++..+++|+|.+| ++++|+.|+|||+|||+... .
T Consensus 251 ~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~ 329 (474)
T 1zmd_A 251 DGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVN-TRFQTKIPNIYAIGDVVAGPMLAH 329 (474)
T ss_dssp TSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCC-TTCBCSSTTEEECGGGSSSCCCHH
T ss_pred CceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEEC-cCCccCCCCEEEeeecCCCCccHH
Confidence 2 333 355689999999999999998433 34457777778999999 67889999999999998643 3
Q ss_pred cchHHHHHHHHHHHHh
Q 013435 397 GASIDARRISEDIEHQ 412 (443)
Q Consensus 397 ~a~~~a~~~a~~i~~~ 412 (443)
.|..||+.+|++|.+.
T Consensus 330 ~A~~~g~~aa~~i~~~ 345 (474)
T 1zmd_A 330 KAEDEGIICVEGMAGG 345 (474)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 5788999999999864
No 37
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=99.98 E-value=1.8e-33 Score=280.40 Aligned_cols=298 Identities=15% Similarity=0.155 Sum_probs=192.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
.+||+|||||++|+++|..|++. |.+|+|||+++.++ |.....+.. +.. ........++...++.
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~--~~~~gl~~~----------~~g-~~~~~~~~~~~~~~~~ 69 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS--YGGCGIPYY----------VSG-EVSNIESLQATPYNVV 69 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc--ccccccchh----------hcC-CCCchHHhccccchhc
Confidence 36899999999999999999999 89999999998653 111000000 000 0000000011112245
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
.+...+.++.++.++++++|+.++... ..+.+.. ...++...+.||++|+||| +.|..|.+||.+. . ..++.
T Consensus 70 ~~~~~~~~~~gi~~~~~~~V~~id~~~--~~v~~~~--~~~g~~~~~~~d~lviAtG--~~p~~p~i~G~~~-~-~v~~~ 141 (472)
T 3iwa_A 70 RDPEFFRINKDVEALVETRAHAIDRAA--HTVEIEN--LRTGERRTLKYDKLVLALG--SKANRPPVEGMDL-A-GVTPV 141 (472)
T ss_dssp -----------CEEECSEEEEEEETTT--TEEEEEE--TTTCCEEEEECSEEEECCC--EEECCCSCTTTTS-B-TEEEC
T ss_pred cCHHHHhhhcCcEEEECCEEEEEECCC--CEEEEee--cCCCCEEEEECCEEEEeCC--CCcCCCCCCCCCC-C-CEEEe
Confidence 566666667888988999999998766 6654443 1122336899999999999 6888888888752 1 22222
Q ss_pred CCCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhhc-CCccEEEEecCCccccccccCCCccchhhhhhhhchhHH
Q 013435 192 SSYKTG-------ELFRDKNVLVVGCGNSGMEVSLDLCNY-NARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRL 263 (443)
Q Consensus 192 ~~~~~~-------~~~~~~~v~ViG~G~~~~e~a~~l~~~-g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 263 (443)
....+. ....+++++|||+|.+|+|+|..|... |.+|+++.|.+ .++|... ....
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~-~~l~~~~----------------~~~~ 204 (472)
T 3iwa_A 142 TNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELAD-QIMPGFT----------------SKSL 204 (472)
T ss_dssp CSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSS-SSSTTTS----------------CHHH
T ss_pred CCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccC-ccccccc----------------CHHH
Confidence 221111 013478999999999999999999999 99999999988 3444111 1111
Q ss_pred HHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC-Cc---EEEcCCc
Q 013435 264 VDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH-HA---AEFIDGS 337 (443)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~-~~---v~~~~g~ 337 (443)
.+ .+.+.+++.+|+++.+ ++++.. ++ +.+.+|+
T Consensus 205 ~~-----------------------------------------~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~ 243 (472)
T 3iwa_A 205 SQ-----------------------------------------MLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKR 243 (472)
T ss_dssp HH-----------------------------------------HHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSC
T ss_pred HH-----------------------------------------HHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCC
Confidence 11 1123344557777766 666654 22 6678899
Q ss_pred EEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC-------C------cccchHHHHH
Q 013435 338 IENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR-------G------LLGASIDARR 404 (443)
Q Consensus 338 ~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~-------~------~~~a~~~a~~ 404 (443)
++++|.||+|+|+.|++ .++...++..+++|++.+| ++++++.|+|||+|||+. . ...|..||+.
T Consensus 244 ~i~aD~Vv~a~G~~p~~-~l~~~~gl~~~~~g~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~ 321 (472)
T 3iwa_A 244 TLDADLVILAAGVSPNT-QLARDAGLELDPRGAIIVD-TRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRV 321 (472)
T ss_dssp EEECSEEEECSCEEECC-HHHHHHTCCBCTTCCEECC-TTCBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHH
T ss_pred EEEcCEEEECCCCCcCH-HHHHhCCccCCCCCCEEEC-CCcccCCCCEEEeccceecccccCCceeecchHHHHHHHHHH
Confidence 99999999999999998 5666668877788999999 788899999999999972 1 2257889999
Q ss_pred HHHHHHHh
Q 013435 405 ISEDIEHQ 412 (443)
Q Consensus 405 ~a~~i~~~ 412 (443)
+|++|.+.
T Consensus 322 aa~~i~g~ 329 (472)
T 3iwa_A 322 IGTNLADG 329 (472)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 99999864
No 38
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=99.98 E-value=1.8e-33 Score=278.55 Aligned_cols=285 Identities=21% Similarity=0.305 Sum_probs=193.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
++||+|||||++|+++|..|++. +.+|+|+|+.+.++..... ++. .........++.
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~----------------~p~-----~~~~~~~~~~~~ 61 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCG----------------IPY-----VVEGLSTPDKLM 61 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcC----------------Ccc-----ccCCCCCHHHhh
Confidence 47899999999999999999998 7899999998865421110 110 001111223333
Q ss_pred HHH-HHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 112 TYL-ETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 112 ~~l-~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
.+. .++.++.+++++++++|+.++. ..+.|.+.+ +...+.||+||+||| +.|..|.+||.+.. + ++.
T Consensus 62 ~~~~~~~~~~~gi~v~~~~~v~~i~~----~~~~v~~~~----g~~~~~~d~lviAtG--~~p~~p~i~G~~~~-~-v~~ 129 (449)
T 3kd9_A 62 YYPPEVFIKKRGIDLHLNAEVIEVDT----GYVRVRENG----GEKSYEWDYLVFANG--ASPQVPAIEGVNLK-G-VFT 129 (449)
T ss_dssp ----CTHHHHTTCEEETTCEEEEECS----SEEEEECSS----SEEEEECSEEEECCC--EEECCCSCBTTTST-T-EEC
T ss_pred hcCHHHHHHhcCcEEEecCEEEEEec----CCCEEEECC----ceEEEEcCEEEECCC--CCCCCCCCCCCCCC-C-EEE
Confidence 333 3344678999999999988864 345565543 225899999999999 68888888886531 1 222
Q ss_pred cCCCCC-------CCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHH
Q 013435 191 SSSYKT-------GELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRL 263 (443)
Q Consensus 191 ~~~~~~-------~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 263 (443)
.....+ .....+++++|||+|.+|+|+|..|++.|.+|+++.|++ .+++.. +....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~----------------~~~~~ 192 (449)
T 3kd9_A 130 ADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE-RVLRRS----------------FDKEV 192 (449)
T ss_dssp SCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTTT----------------SCHHH
T ss_pred eCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC-ccchhh----------------cCHHH
Confidence 111111 012367899999999999999999999999999999988 343431 01111
Q ss_pred HHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc---EEEcCCcE
Q 013435 264 VDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA---AEFIDGSI 338 (443)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~---v~~~~g~~ 338 (443)
.+. +.+.+.+. |+++.+ +.++..++ ..+.++++
T Consensus 193 ~~~-----------------------------------------l~~~l~~~-v~i~~~~~v~~i~~~~~v~~v~~~g~~ 230 (449)
T 3kd9_A 193 TDI-----------------------------------------LEEKLKKH-VNLRLQEITMKIEGEERVEKVVTDAGE 230 (449)
T ss_dssp HHH-----------------------------------------HHHHHTTT-SEEEESCCEEEEECSSSCCEEEETTEE
T ss_pred HHH-----------------------------------------HHHHHHhC-cEEEeCCeEEEEeccCcEEEEEeCCCE
Confidence 111 12233344 666554 55555432 34567888
Q ss_pred EcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC------C-------cccchHHHHHH
Q 013435 339 ENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR------G-------LLGASIDARRI 405 (443)
Q Consensus 339 ~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~------~-------~~~a~~~a~~~ 405 (443)
+++|.||+|+|++|++ .++...++..+++|++.+| ++++|+.|+|||+|||+. + ...|..||+.+
T Consensus 231 i~~D~Vv~a~G~~p~~-~l~~~~gl~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~a 308 (449)
T 3kd9_A 231 YKAELVILATGIKPNI-ELAKQLGVRIGETGAIWTN-EKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVA 308 (449)
T ss_dssp EECSEEEECSCEEECC-HHHHHTTCCBCTTSSBCCC-TTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHH
T ss_pred EECCEEEEeeCCccCH-HHHHhCCccCCCCCCEEEC-CCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHH
Confidence 9999999999999998 5666668887888999999 788899999999999973 1 12577899999
Q ss_pred HHHHHHh
Q 013435 406 SEDIEHQ 412 (443)
Q Consensus 406 a~~i~~~ 412 (443)
|++|.+.
T Consensus 309 a~~i~g~ 315 (449)
T 3kd9_A 309 GSNIAGK 315 (449)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 9999864
No 39
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=99.98 E-value=3.1e-33 Score=279.64 Aligned_cols=290 Identities=19% Similarity=0.209 Sum_probs=199.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcC---CCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKG---VPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g---~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
+.+||+|||||++|+++|..|++.| .+|+|||+++.++..+.. +....... ...+ ++
T Consensus 34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-----~~~~~~~~------~~~~---------~~ 93 (490)
T 2bc0_A 34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISFLGAG-----MALWIGEQ------IAGP---------EG 93 (490)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSBCGGG-----HHHHHTTS------SSCS---------GG
T ss_pred cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCccccc-----cchhhcCc------cCCH---------HH
Confidence 3489999999999999999999988 999999998765432211 00000000 0000 00
Q ss_pred HHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCC------C
Q 013435 110 FLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMD------G 183 (443)
Q Consensus 110 ~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~------~ 183 (443)
+.....+.+++.+++++.+++|+.++..+ ..+.+.. ++ +..++.||+||+||| +.|..|.+||.+ .
T Consensus 94 ~~~~~~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~-~g---~~~~~~~d~lviAtG--~~p~~p~i~G~~~~~~~~~ 165 (490)
T 2bc0_A 94 LFYSDKEELESLGAKVYMESPVQSIDYDA--KTVTALV-DG---KNHVETYDKLIFATG--SQPILPPIKGAEIKEGSLE 165 (490)
T ss_dssp GBSCCHHHHHHTTCEEETTCCEEEEETTT--TEEEEEE-TT---EEEEEECSEEEECCC--EEECCCSCBTCCBCTTCTT
T ss_pred hhhcCHHHHHhCCCEEEeCCEEEEEECCC--CEEEEEe-CC---cEEEEECCEEEECCC--CCcCCCCCCCccccccccc
Confidence 00111233456788888899999998665 5655542 21 226799999999999 688888898876 2
Q ss_pred Cc---ccEeecCCCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhh
Q 013435 184 FR---GPIFHSSSYKTG-------ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSM 253 (443)
Q Consensus 184 ~~---~~~~~~~~~~~~-------~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~ 253 (443)
|. ..+++...+.+. ....+++|+|||+|.+|+|+|..|++.|.+||++.|++ .++|..
T Consensus 166 f~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~----------- 233 (490)
T 2bc0_A 166 FEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVD-TCLAGY----------- 233 (490)
T ss_dssp CCBSSTTEEECSSHHHHHHHHHHTTSTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTTT-----------
T ss_pred cccccCCEEEeCCHHHHHHHHHHhhhcCCceEEEECCCHHHHHHHHHHHHCCCeEEEEEccc-chhhhH-----------
Confidence 21 123332221111 11467999999999999999999999999999999988 343421
Q ss_pred hhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc-
Q 013435 254 CLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA- 330 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~- 330 (443)
+.....+ .+.+.+++.+|+++.+ ++++..++
T Consensus 234 -----~~~~~~~-----------------------------------------~l~~~l~~~GV~i~~~~~v~~i~~~~~ 267 (490)
T 2bc0_A 234 -----YDRDLTD-----------------------------------------LMAKNMEEHGIQLAFGETVKEVAGNGK 267 (490)
T ss_dssp -----SCHHHHH-----------------------------------------HHHHHHHTTTCEEEETCCEEEEECSSS
T ss_pred -----HHHHHHH-----------------------------------------HHHHHHHhCCeEEEeCCEEEEEEcCCc
Confidence 1111111 1223444567777766 66666543
Q ss_pred ---EEEcCCcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------------
Q 013435 331 ---AEFIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG------------- 394 (443)
Q Consensus 331 ---v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~------------- 394 (443)
+.+ +|+++++|.||+|+|++|++ .++... +..+++|+|.+| ++++|+.|+|||+|||+..
T Consensus 268 v~~v~~-~g~~i~~D~Vi~a~G~~p~~-~ll~~~-l~~~~~G~I~Vd-~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~ 343 (490)
T 2bc0_A 268 VEKIIT-DKNEYDVDMVILAVGFRPNT-TLGNGK-IDLFRNGAFLVN-KRQETSIPGVYAIGDCATIYDNATRDTNYIAL 343 (490)
T ss_dssp CCEEEE-SSCEEECSEEEECCCEEECC-GGGTTC-SCBCTTSCBCCC-TTCBCSSTTEEECGGGBCEEETTTTEEECCCC
T ss_pred EEEEEE-CCcEEECCEEEECCCCCcCh-HHHHhh-hccCCCCCEEEC-CCcccCCCCEEEeeeeEEeccccCCceeeccc
Confidence 444 77889999999999999998 566655 666678999999 7888999999999999852
Q ss_pred cccchHHHHHHHHHHHHh
Q 013435 395 LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 395 ~~~a~~~a~~~a~~i~~~ 412 (443)
...|..||+.+|.+|.+.
T Consensus 344 ~~~A~~qg~~aa~~i~g~ 361 (490)
T 2bc0_A 344 ASNAVRTGIVAAHNACGT 361 (490)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 225788999999999863
No 40
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=99.98 E-value=7.6e-34 Score=289.69 Aligned_cols=291 Identities=16% Similarity=0.190 Sum_probs=200.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
|+||+|||||++|+++|..|++. +.+|+|+|+++.++-. ....+ +.+.... ......+.
T Consensus 1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~--~~~l~----------~~~~~~~-------~~~~~~~~ 61 (565)
T 3ntd_A 1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFA--NCGLP----------YHISGEI-------AQRSALVL 61 (565)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC--GGGHH----------HHHTSSS-------CCGGGGBC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccc--ccCch----------HHhcCCc-------CChHHhhc
Confidence 36899999999999999999998 7899999999865411 00000 0000000 01122234
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
.++.++.++++++++++++|++++... ..+.+.. ...++..++.||+||+||| +.|..|.+||.+.. ..+..
T Consensus 62 ~~~~~~~~~~~i~~~~~~~V~~id~~~--~~v~~~~--~~~g~~~~~~~d~lviAtG--~~p~~p~ipG~~~~--~v~~~ 133 (565)
T 3ntd_A 62 QTPESFKARFNVEVRVKHEVVAIDRAA--KLVTVRR--LLDGSEYQESYDTLLLSPG--AAPIVPPIPGVDNP--LTHSL 133 (565)
T ss_dssp CCHHHHHHHHCCEEETTEEEEEEETTT--TEEEEEE--TTTCCEEEEECSEEEECCC--EEECCCCCTTCCST--TEECC
T ss_pred cCHHHHHHhcCcEEEECCEEEEEECCC--CEEEEEe--cCCCCeEEEECCEEEECCC--CCCCCCCCCCCCCC--CEEEe
Confidence 455566677899999999999998766 6654443 1122336899999999999 68888899987542 12222
Q ss_pred CCCCC--C-----CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHH
Q 013435 192 SSYKT--G-----ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLV 264 (443)
Q Consensus 192 ~~~~~--~-----~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 264 (443)
....+ . ....+++++|||+|.+|+|+|..|++.|.+||++.|++ .++|.... ...
T Consensus 134 ~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~-----------------~~~ 195 (565)
T 3ntd_A 134 RNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELAD-QVMTPVDR-----------------EMA 195 (565)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSCTTSCH-----------------HHH
T ss_pred CCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCC-ccchhcCH-----------------HHH
Confidence 21111 0 11357899999999999999999999999999999988 44453211 111
Q ss_pred HHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--------------
Q 013435 265 DQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH-------------- 328 (443)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~-------------- 328 (443)
+.+ .+.+++.+|+++.+ +.++..
T Consensus 196 ~~l-----------------------------------------~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~ 234 (565)
T 3ntd_A 196 GFA-----------------------------------------HQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGED 234 (565)
T ss_dssp HHH-----------------------------------------HHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCC
T ss_pred HHH-----------------------------------------HHHHHHCCCEEEeCCeEEEEeccccccccccccccc
Confidence 111 12222334444443 333332
Q ss_pred ------C---cEEEcCCcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC------
Q 013435 329 ------H---AAEFIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR------ 393 (443)
Q Consensus 329 ------~---~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~------ 393 (443)
+ .+.+.+|+++++|.||+|+|++|++ .++...++..+++|+|.+| ++++|+.|+|||+|||+.
T Consensus 235 ~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~-~l~~~~g~~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~ 312 (565)
T 3ntd_A 235 TAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPET-QLARDAGLAIGELGGIKVN-AMMQTSDPAIYAVGDAVEEQDFVT 312 (565)
T ss_dssp CTTCCTTCEEEEEETTSCEEEESEEEECSCEEECC-HHHHHHTCCBCTTSSBCCC-TTCBCSSTTEEECGGGBCEEBTTT
T ss_pred cccccCCCcEEEEEcCCCEEEcCEEEECcCCccch-HHHHhCCcccCCCCCEEEC-CCcccCCCCEEEeeeeEeeccccC
Confidence 1 2566788899999999999999998 5666668877788999999 788899999999999972
Q ss_pred -C------cccchHHHHHHHHHHHHh
Q 013435 394 -G------LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 394 -~------~~~a~~~a~~~a~~i~~~ 412 (443)
. ...|..||+.+|++|.+.
T Consensus 313 g~~~~~~~~~~A~~~g~~aa~~i~g~ 338 (565)
T 3ntd_A 313 GQACLVPLAGPANRQGRMAADNMFGR 338 (565)
T ss_dssp CCEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred CceeecccHHHHHHHHHHHHHHhcCC
Confidence 1 124778999999999864
No 41
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=99.98 E-value=2.6e-33 Score=281.72 Aligned_cols=332 Identities=13% Similarity=0.077 Sum_probs=202.8
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC--------CCCcccccC-CCCceeeecCCc----cccCCCCC
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN--------CIASLWQLK-TYDRLRLHLPKQ----FCQLPLMP 96 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~--------~~gg~w~~~-~~~~~~~~~~~~----~~~~~~~~ 96 (443)
+....|||+|||||++|+++|..|++.|.+|+|||+.+ .+||+|.+. +.|...+..... ...+..+.
T Consensus 28 ~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g 107 (519)
T 3qfa_A 28 PKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYG 107 (519)
T ss_dssp CSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcC
Confidence 33456899999999999999999999999999999954 688877542 222211110000 00000011
Q ss_pred CCCCCCCCCCHHHHHHHHHH-----------HHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEE
Q 013435 97 FPSNFPTYPTKQQFLTYLET-----------YTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIV 165 (443)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIi 165 (443)
+............+..+... ..+..++++..+. +..++ . ..+.|...++ +..++.||+|||
T Consensus 108 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~d--~--~~v~v~~~~g---~~~~i~~d~lVi 179 (519)
T 3qfa_A 108 WKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFIG--P--HRIKATNNKG---KEKIYSAERFLI 179 (519)
T ss_dssp BCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEE--T--TEEEEECTTC---CCCEEEEEEEEE
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEee--C--CEEEEEcCCC---CEEEEECCEEEE
Confidence 10000112234444443332 3344566655443 33332 2 4444544332 225899999999
Q ss_pred ccCCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccC
Q 013435 166 ATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIG 245 (443)
Q Consensus 166 AtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~ 245 (443)
||| +.|..|.+||... ..+++.+.. .....+++++|||+|.+|+|+|..|++.|.+||++.|+ .++|..+.
T Consensus 180 ATG--s~p~~p~i~G~~~---~~~t~~~~~-~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~- 250 (519)
T 3qfa_A 180 ATG--ERPRYLGIPGDKE---YCISSDDLF-SLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILLRGFDQ- 250 (519)
T ss_dssp CCC--EEECCCCCTTHHH---HCBCHHHHT-TCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CSSTTSCH-
T ss_pred ECC--CCcCCCCCCCccC---ceEcHHHHh-hhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc--cccccCCH-
Confidence 999 7888888888543 122222221 22234678999999999999999999999999999885 34443211
Q ss_pred CCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--C
Q 013435 246 RSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--I 323 (443)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v 323 (443)
...+. +.+.+++.+|+++.+ +
T Consensus 251 ----------------~~~~~-----------------------------------------~~~~l~~~GV~v~~~~~v 273 (519)
T 3qfa_A 251 ----------------DMANK-----------------------------------------IGEHMEEHGIKFIRQFVP 273 (519)
T ss_dssp ----------------HHHHH-----------------------------------------HHHHHHHTTCEEEESEEE
T ss_pred ----------------HHHHH-----------------------------------------HHHHHHHCCCEEEeCCeE
Confidence 11111 122333456666654 2
Q ss_pred cEE---eC---CcEE----EcCCc---EEcccEEEEccCCCCCCCCC-ccCcCcCcc-CCCCcCCCCCCCCcCCCceEEE
Q 013435 324 KRL---TH---HAAE----FIDGS---IENYDAIILATGYKSNVPYW-LKDTEMFSE-KDGFPRMEFPNGWKGAHGLYAV 388 (443)
Q Consensus 324 ~~~---~~---~~v~----~~~g~---~~~~D~vi~atG~~~~~~~~-~~~~~l~~~-~~G~i~~~~~~~~~~~~~ifai 388 (443)
.++ .. +++. ..++. ++++|.||+|+|++|++..+ +...++..+ ++|+|.+| ++++|+.|+|||+
T Consensus 274 ~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd-~~~~Ts~~~IyA~ 352 (519)
T 3qfa_A 274 IKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVT-DEEQTNVPYIYAI 352 (519)
T ss_dssp EEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCC-TTSBCSSTTEEEC
T ss_pred EEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeC-CCCccCCCCEEEE
Confidence 333 21 2222 23452 56899999999999998544 455578776 57999999 7788999999999
Q ss_pred eecc-CC---cccchHHHHHHHHHHHHhhHHHHHhHhhhhccccCCCCCccc
Q 013435 389 GFNK-RG---LLGASIDARRISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLE 436 (443)
Q Consensus 389 Gd~~-~~---~~~a~~~a~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 436 (443)
|||+ .. ...|..+|+.+|++|.+...........+...+..|+...+.
T Consensus 353 GD~~~g~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG 404 (519)
T 3qfa_A 353 GDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACG 404 (519)
T ss_dssp GGGBSSSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSCEEEEE
T ss_pred EeccCCCCccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEEEECCCceEEec
Confidence 9998 32 226788999999999864322222333334445555544443
No 42
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=99.98 E-value=8.6e-33 Score=277.18 Aligned_cols=307 Identities=16% Similarity=0.152 Sum_probs=204.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc---CCCEEEEecCCCCCcccccC-CCCceeeecCC----ccccCCCCCCC--CCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK---GVPSLILERANCIASLWQLK-TYDRLRLHLPK----QFCQLPLMPFP--SNFPT 103 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~~~~~~~~~--~~~~~ 103 (443)
.|||+|||||++|+++|..|++. |.+|+|||+.+ +||.|.+. +.+...+.... ....+.....+ .. ..
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~-~~ 79 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFD-DA 79 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC-------
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccC-CC
Confidence 47999999999999999999999 99999999998 88876542 11111100000 00001111110 00 00
Q ss_pred CCCHHHH-----------HHHHHHHHHHcCCccccceeEEEEEEeC--CCCeEEEEEeecCCCcEEEEEeCEEEEccCCC
Q 013435 104 YPTKQQF-----------LTYLETYTNHFGLDPVFNTTVVNAEYDH--LSRLWRVKTQQGLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 104 ~~~~~~~-----------~~~l~~~~~~~~~~v~~~~~V~~i~~~~--~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~ 170 (443)
......+ ..++.+++++.+++++.++ +..++... +...+.|...++ +...+.||++|+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g---~~~~~~~d~lviATG-- 153 (499)
T 1xdi_A 80 KISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADG---STSEHEADVVLVATG-- 153 (499)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTS---CEEEEEESEEEECCC--
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCC---cEEEEEeCEEEEcCC--
Confidence 1122332 3334566677888887775 55554310 013444554332 224799999999999
Q ss_pred CCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccc
Q 013435 171 AEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFG 250 (443)
Q Consensus 171 ~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~ 250 (443)
+.|..|.++|.+.. .+++..+.... ...+++++|||+|.+|+|+|..+...|.+|+++.+.+ .++|..+
T Consensus 154 s~p~~p~i~g~~~~--~v~~~~~~~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d------- 222 (499)
T 1xdi_A 154 ASPRILPSAQPDGE--RILTWRQLYDL-DALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQD-HVLPYED------- 222 (499)
T ss_dssp EEECCCGGGCCCSS--SEEEGGGGGGC-SSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSS-SSSCCSS-------
T ss_pred CCCCCCCCCCCCcC--cEEehhHhhhh-hccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccC-------
Confidence 67888888886542 23443333222 2346899999999999999999999999999999988 4444321
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC
Q 013435 251 LSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH 328 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~ 328 (443)
..... .+.+.+++.+++++.+ |+++..
T Consensus 223 ----------~~~~~-----------------------------------------~l~~~l~~~GV~i~~~~~V~~i~~ 251 (499)
T 1xdi_A 223 ----------ADAAL-----------------------------------------VLEESFAERGVRLFKNARAASVTR 251 (499)
T ss_dssp ----------HHHHH-----------------------------------------HHHHHHHHTTCEEETTCCEEEEEE
T ss_pred ----------HHHHH-----------------------------------------HHHHHHHHCCCEEEeCCEEEEEEE
Confidence 11111 1123344556777765 666654
Q ss_pred Cc----EEEcCCcEEcccEEEEccCCCCCCCCC--ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---ccch
Q 013435 329 HA----AEFIDGSIENYDAIILATGYKSNVPYW--LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---LGAS 399 (443)
Q Consensus 329 ~~----v~~~~g~~~~~D~vi~atG~~~~~~~~--~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~~a~ 399 (443)
++ +.+.+|+++++|.||+|+|+.|++ .+ +...++..+++|+|.+| ++++|+.|+|||+|||+... ..|.
T Consensus 252 ~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~-~~l~l~~~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~l~~~A~ 329 (499)
T 1xdi_A 252 TGAGVLVTMTDGRTVEGSHALMTIGSVPNT-SGLGLERVGIQLGRGNYLTVD-RVSRTLATGIYAAGDCTGLLPLASVAA 329 (499)
T ss_dssp CSSSEEEEETTSCEEEESEEEECCCEEECC-SSSCTTTTTCCCBTTTBCCCC-SSSBCSSTTEEECSGGGTSCSCHHHHH
T ss_pred eCCEEEEEECCCcEEEcCEEEECCCCCcCC-CcCCchhcCceECCCCCEEEC-CCcccCCCCEEEEeccCCCcccHHHHH
Confidence 32 445678899999999999999998 45 45568877778999999 77889999999999998642 2578
Q ss_pred HHHHHHHHHHHHh
Q 013435 400 IDARRISEDIEHQ 412 (443)
Q Consensus 400 ~~a~~~a~~i~~~ 412 (443)
.||+.+|++|.+.
T Consensus 330 ~~g~~aa~~i~g~ 342 (499)
T 1xdi_A 330 MQGRIAMYHALGE 342 (499)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC
Confidence 8999999999864
No 43
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=99.98 E-value=8.1e-33 Score=273.66 Aligned_cols=297 Identities=18% Similarity=0.198 Sum_probs=194.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCCc----cc-cCCCCCCCCCCCCCCCH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPKQ----FC-QLPLMPFPSNFPTYPTK 107 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~ 107 (443)
.+||+|||||++|+++|..|++.|.+|+|+|+. .+||.|.+. +.|...+..... .. ....+.+... ......
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~-~~~~~~ 81 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTT-INKFNW 81 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEE-EEEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCC-CCccCH
Confidence 579999999999999999999999999999998 678887541 111110000000 00 0000000000 000122
Q ss_pred HHHHH-----------HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 108 QQFLT-----------YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 108 ~~~~~-----------~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
..+.. .+.....+.+++++.++ ++.++ . .. |.+ ++ ..+.||+||+||| +.|..|
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~i~--~--~~--v~~-~g-----~~~~~d~lviAtG--s~p~~p 146 (450)
T 1ges_A 82 ETLIASRTAYIDRIHTSYENVLGKNNVDVIKGF-ARFVD--A--KT--LEV-NG-----ETITADHILIATG--GRPSHP 146 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CEEEE--T--TE--EEE-TT-----EEEEEEEEEECCC--EEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEec--C--CE--EEE-CC-----EEEEeCEEEECCC--CCCCCC
Confidence 22222 22334456677776664 33443 2 33 444 33 6799999999999 688888
Q ss_pred CCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhh
Q 013435 177 YIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 177 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
.+||.+. .++..+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|...
T Consensus 147 ~i~g~~~----~~~~~~~~~-~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~------------- 207 (450)
T 1ges_A 147 DIPGVEY----GIDSDGFFA-LPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD-APLPSFD------------- 207 (450)
T ss_dssp CSTTGGG----SBCHHHHHH-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSC-------------
T ss_pred CCCCccc----eecHHHhhh-hhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCC-chhhhhh-------------
Confidence 8888642 122111111 12247899999999999999999999999999999887 3333221
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC-----
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH----- 329 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~----- 329 (443)
....+.+ .+.+++.+++++.+ +.++..+
T Consensus 208 ----~~~~~~l-----------------------------------------~~~l~~~Gv~i~~~~~v~~i~~~~~~~~ 242 (450)
T 1ges_A 208 ----PMISETL-----------------------------------------VEVMNAEGPQLHTNAIPKAVVKNTDGSL 242 (450)
T ss_dssp ----HHHHHHH-----------------------------------------HHHHHHHSCEEECSCCEEEEEECTTSCE
T ss_pred ----HHHHHHH-----------------------------------------HHHHHHCCCEEEeCCEEEEEEEeCCcEE
Confidence 1111111 12233345666655 5555432
Q ss_pred cEEEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHHHH
Q 013435 330 AAEFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDARRI 405 (443)
Q Consensus 330 ~v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~~~ 405 (443)
.+.+.+|+++++|.||+|+|++|+++.+ +...++..+++|+|.+| ++++|+.|+|||+|||+.. ...|..||+.+
T Consensus 243 ~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~a 321 (450)
T 1ges_A 243 TLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVD-KYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRL 321 (450)
T ss_dssp EEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCC-TTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHH
T ss_pred EEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeEC-CCCccCCCCEEEEeccCCCCccHHHHHHHHHHH
Confidence 3667888899999999999999998444 34457877778999999 6778999999999999854 22678899999
Q ss_pred HHHHHHh
Q 013435 406 SEDIEHQ 412 (443)
Q Consensus 406 a~~i~~~ 412 (443)
|.+|.+.
T Consensus 322 a~~i~~~ 328 (450)
T 1ges_A 322 SERLFNN 328 (450)
T ss_dssp HHHHHTT
T ss_pred HHHHcCC
Confidence 9999863
No 44
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.98 E-value=1.8e-32 Score=273.28 Aligned_cols=307 Identities=17% Similarity=0.135 Sum_probs=202.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecC----------CccccCCCCCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLP----------KQFCQLPLMPFPSNF 101 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~ 101 (443)
..+||+|||||++|+++|..|++.|.+|+|+|+.+.+||.|.+. +.+...+... .....++.......+
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 84 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL 84 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 46899999999999999999999999999999998899987542 1111000000 000000000000000
Q ss_pred CCCC-CH----HHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 102 PTYP-TK----QQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 102 ~~~~-~~----~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
..+. .. ..+...+...+++.+++++.++.+. + +. ..+.|.+.++ +...++||+||+||| +.|..|
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~--~~~~v~~~~G---~~~~i~~d~lIiAtG--s~p~~p 154 (470)
T 1dxl_A 85 AAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-V--SP--SEISVDTIEG---ENTVVKGKHIIIATG--SDVKSL 154 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-E--ET--TEEEECCSSS---CCEEEECSEEEECCC--EEECCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cC--CEEEEEeCCC---ceEEEEcCEEEECCC--CCCCCC
Confidence 0000 01 1123334556667788888887553 3 23 5666654332 225799999999999 677888
Q ss_pred CCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhh
Q 013435 177 YIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 177 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
+++|.+.. .+++..+.... ...+++++|||+|.+|+|+|..|.+.|.+|+++.|++ .++|...
T Consensus 155 ~~~g~~~~--~v~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~------------- 217 (470)
T 1dxl_A 155 PGVTIDEK--KIVSSTGALAL-SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS-EIVPTMD------------- 217 (470)
T ss_dssp TTBCCCSS--SEECHHHHTTC-SSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSC-------------
T ss_pred CCCCCCcc--cEEeHHHhhhh-hhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-ccccccc-------------
Confidence 88875431 23333322222 2257899999999999999999999999999999988 3444321
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc----
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA---- 330 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~---- 330 (443)
....+. +.+.+++.+|+++.+ +.++..++
T Consensus 218 ----~~~~~~-----------------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~~~ 252 (470)
T 1dxl_A 218 ----AEIRKQ-----------------------------------------FQRSLEKQGMKFKLKTKVVGVDTSGDGVK 252 (470)
T ss_dssp ----HHHHHH-----------------------------------------HHHHHHHSSCCEECSEEEEEEECSSSSEE
T ss_pred ----HHHHHH-----------------------------------------HHHHHHHcCCEEEeCCEEEEEEEcCCeEE
Confidence 111111 123333456666665 66665432
Q ss_pred EEEc---CC--cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---ccchHH
Q 013435 331 AEFI---DG--SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---LGASID 401 (443)
Q Consensus 331 v~~~---~g--~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~~a~~~ 401 (443)
+.+. +| +++++|.||+|+|++|++..+ +...++..+++|+|.+| ++++|+.|+|||+|||+... ..|..|
T Consensus 253 v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~ 331 (470)
T 1dxl_A 253 LTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVN-ERFSTNVSGVYAIGDVIPGPMLAHKAEED 331 (470)
T ss_dssp EEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCC-TTCBCSSTTEEECSTTSSSCCCHHHHHHH
T ss_pred EEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeEC-cCCccCCCCEEEEeccCCCCccHHHHHHH
Confidence 3343 45 579999999999999998433 45567877778999999 67889999999999998642 257889
Q ss_pred HHHHHHHHHHh
Q 013435 402 ARRISEDIEHQ 412 (443)
Q Consensus 402 a~~~a~~i~~~ 412 (443)
|+.+|.+|.+.
T Consensus 332 g~~aa~~i~g~ 342 (470)
T 1dxl_A 332 GVACVEYLAGK 342 (470)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHcCC
Confidence 99999999863
No 45
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=99.98 E-value=4.9e-33 Score=277.67 Aligned_cols=301 Identities=16% Similarity=0.157 Sum_probs=197.0
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecC----CccccCCCCCCCCCCCCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLP----KQFCQLPLMPFPSNFPTYPT 106 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 106 (443)
...|||+|||||++|+++|..|++.|.+|+|+|++ .+||.|.+ .+.+...+... ........+.++.. .....
T Consensus 18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~ 95 (478)
T 3dk9_A 18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSC-EGKFN 95 (478)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCC-CCCCC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCC-CCccC
Confidence 45699999999999999999999999999999977 67887644 22221111000 00001111111111 11123
Q ss_pred HHHHHHH-----------HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 107 KQQFLTY-----------LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 107 ~~~~~~~-----------l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
...+..+ +....+..++++..+. +..++. ..+.|.. ++ .+++||+||+||| +.|..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~~----~~~~v~~-~g-----~~~~~d~lviAtG--~~p~~ 162 (478)
T 3dk9_A 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH-AAFTSD----PKPTIEV-SG-----KKYTAPHILIATG--GMPST 162 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEECSC----SSCEEEE-TT-----EEEECSCEEECCC--EEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEeeC----CeEEEEE-CC-----EEEEeeEEEEccC--CCCCC
Confidence 3333333 2333445566655543 222221 2344553 22 6799999999999 68888
Q ss_pred C---CCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchh
Q 013435 176 P---YIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLS 252 (443)
Q Consensus 176 p---~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~ 252 (443)
| ++||.+. ..++..+. .....+++++|||+|.+|+|+|..|++.|.+||++.|.+ .++|..+.
T Consensus 163 p~~~~i~G~~~----~~~~~~~~-~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~-------- 228 (478)
T 3dk9_A 163 PHESQIPGASL----GITSDGFF-QLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD-KVLRSFDS-------- 228 (478)
T ss_dssp CCTTTSTTGGG----SBCHHHHT-TCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCH--------
T ss_pred CCcCCCCCCce----eEchHHhh-chhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCC-ccccccCH--------
Confidence 8 8888652 12211111 122347899999999999999999999999999999988 34343221
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--
Q 013435 253 MCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH-- 328 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~-- 328 (443)
...+ .+.+.+++.+|+++.+ ++++..
T Consensus 229 ---------~~~~-----------------------------------------~~~~~l~~~gv~i~~~~~v~~i~~~~ 258 (478)
T 3dk9_A 229 ---------MIST-----------------------------------------NCTEELENAGVEVLKFSQVKEVKKTL 258 (478)
T ss_dssp ---------HHHH-----------------------------------------HHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred ---------HHHH-----------------------------------------HHHHHHHHCCCEEEeCCEEEEEEEcC
Confidence 1111 1123344556777766 555542
Q ss_pred Cc----EEEcC---C----cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC--
Q 013435 329 HA----AEFID---G----SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-- 394 (443)
Q Consensus 329 ~~----v~~~~---g----~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-- 394 (443)
++ +.+.+ | +++++|.||+|+|++|++..+ +...++..+++|+|.+| ++++|+.|+|||+|||+..
T Consensus 259 ~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~ 337 (478)
T 3dk9_A 259 SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD-EFQNTNVKGIYAVGDVCGKAL 337 (478)
T ss_dssp SSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCC-TTCBCSSTTEEECGGGGCSSC
T ss_pred CCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeC-CCcccCCCCEEEEEecCCCCc
Confidence 23 44554 2 578999999999999998545 45558888889999999 7889999999999999853
Q ss_pred -cccchHHHHHHHHHHHHh
Q 013435 395 -LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 395 -~~~a~~~a~~~a~~i~~~ 412 (443)
...|..+|+.+|++|.+.
T Consensus 338 ~~~~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 338 LTPVAIAAGRKLAHRLFEY 356 (478)
T ss_dssp CHHHHHHHHHHHHHHHHSC
T ss_pred cHhHHHHHHHHHHHHHcCC
Confidence 226788999999999875
No 46
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=99.98 E-value=3.9e-32 Score=271.28 Aligned_cols=303 Identities=16% Similarity=0.144 Sum_probs=200.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCC----cc--ccCCCCCCCCCCCCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPK----QF--CQLPLMPFPSNFPTYPT 106 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~ 106 (443)
.+||+|||||++|+++|..|++.|.+|+|+|+.+.+||.|.+. +.+...+.... .. .......+.. ....
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~---~~~~ 82 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPE---PELD 82 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCC---CCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCC---CccC
Confidence 4799999999999999999999999999999988888876432 11111000000 00 0000111100 0112
Q ss_pred HHHHHH-----------HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeec-------CCCcEEEEEeCEEEEccC
Q 013435 107 KQQFLT-----------YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQG-------LKQEETVYLCQWLIVATG 168 (443)
Q Consensus 107 ~~~~~~-----------~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~-------~~~~~~~i~a~~vIiAtG 168 (443)
...+.. .+...+++.+++++.++.+. .+. ..+.|.+.++ ..++..+++||+||+|||
T Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~--~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtG 157 (482)
T 1ojt_A 83 IDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF---LDP--HHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAG 157 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE---EET--TEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE---ccC--CEEEEEecCCcccccccccCcceEEEcCEEEECCC
Confidence 222222 23455666788887776543 223 5666654432 112235799999999999
Q ss_pred CCCCCccCC-CCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCC
Q 013435 169 ENAEEVVPY-IEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRS 247 (443)
Q Consensus 169 ~~~~p~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~ 247 (443)
+.|..|+ ++. +. .+++..+... ....+++++|||+|.+|+|+|..|++.|.+||++.|.+ .++|...
T Consensus 158 --s~p~~~~~i~~-~~---~v~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~~---- 225 (482)
T 1ojt_A 158 --SRVTKLPFIPE-DP---RIIDSSGALA-LKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD-GLMQGAD---- 225 (482)
T ss_dssp --EEECCCSSCCC-CT---TEECHHHHTT-CCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSC----
T ss_pred --CCCCCCCCCCc-cC---cEEcHHHHhc-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC-ccccccC----
Confidence 5666665 542 21 2333322222 22247899999999999999999999999999999988 4444321
Q ss_pred ccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcE
Q 013435 248 TFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKR 325 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~ 325 (443)
....+ .+.+.+++.+|+++.+ +.+
T Consensus 226 -------------~~~~~-----------------------------------------~l~~~l~~~gV~i~~~~~v~~ 251 (482)
T 1ojt_A 226 -------------RDLVK-----------------------------------------VWQKQNEYRFDNIMVNTKTVA 251 (482)
T ss_dssp -------------HHHHH-----------------------------------------HHHHHHGGGEEEEECSCEEEE
T ss_pred -------------HHHHH-----------------------------------------HHHHHHHhcCCEEEECCEEEE
Confidence 11111 1123344557777776 666
Q ss_pred EeCC----cEEEcC----CcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC--
Q 013435 326 LTHH----AAEFID----GSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-- 394 (443)
Q Consensus 326 ~~~~----~v~~~~----g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-- 394 (443)
+..+ .+.+.+ |+++++|.||+|+|++|+++.+ +...++..+++|+|.+| ++++|+.|+|||+|||+..
T Consensus 252 i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~ 330 (482)
T 1ojt_A 252 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVD-KQMRTNVPHIYAIGDIVGQPM 330 (482)
T ss_dssp EEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCC-TTSBCSSTTEEECGGGTCSSC
T ss_pred EEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeC-CCcccCCCCEEEEEcccCCCc
Confidence 6532 256666 7789999999999999998433 45568877778999999 6888999999999999864
Q ss_pred -cccchHHHHHHHHHHHH
Q 013435 395 -LLGASIDARRISEDIEH 411 (443)
Q Consensus 395 -~~~a~~~a~~~a~~i~~ 411 (443)
...|..||+.+|++|.+
T Consensus 331 l~~~A~~~g~~aa~~i~g 348 (482)
T 1ojt_A 331 LAHKAVHEGHVAAENCAG 348 (482)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHcC
Confidence 23678899999999986
No 47
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7.2e-33 Score=276.21 Aligned_cols=303 Identities=17% Similarity=0.185 Sum_probs=198.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCC----ccccCCCCCCCCC----C-C
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPK----QFCQLPLMPFPSN----F-P 102 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~~~~~~~~~~~----~-~ 102 (443)
..+||+|||||++|+++|..|++.|.+|+|||++ .+||.|.+. +.+...+.... .......+.+... . .
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEH 88 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccccc
Confidence 3579999999999999999999999999999998 588887642 11111000000 0000011110000 0 0
Q ss_pred CCCCHHHHH-----------HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 103 TYPTKQQFL-----------TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 103 ~~~~~~~~~-----------~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
.......+. ..+...+++.+++++.++ +..+ +. ..+.|.+.++ +..++.||+||+||| +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i--~~--~~~~v~~~~g---~~~~~~~d~lviAtG--s 158 (479)
T 2hqm_A 89 LTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFN--KD--GNVEVQKRDN---TTEVYSANHILVATG--G 158 (479)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEEC--TT--SCEEEEESSS---CCEEEEEEEEEECCC--E
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe--eC--CEEEEEeCCC---cEEEEEeCEEEEcCC--C
Confidence 011222222 223344455677766553 4443 22 4566665443 224799999999999 6
Q ss_pred CCccC-CCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccc
Q 013435 172 EEVVP-YIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFG 250 (443)
Q Consensus 172 ~p~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~ 250 (443)
.|..| ++||.+. .+++.++. .....+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ .++|..+
T Consensus 159 ~p~~p~~i~g~~~----~~~~~~~~-~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d------- 225 (479)
T 2hqm_A 159 KAIFPENIPGFEL----GTDSDGFF-RLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGE-TVLRKFD------- 225 (479)
T ss_dssp EECCCTTSTTGGG----SBCHHHHH-HCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSC-------
T ss_pred CCCCCCCCCCccc----ccchHHHh-cccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCC-ccccccC-------
Confidence 78888 8888642 11111111 112357899999999999999999999999999999988 3444321
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC
Q 013435 251 LSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH 328 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~ 328 (443)
....+. +.+.+++.+|+++.+ ++++..
T Consensus 226 ----------~~~~~~-----------------------------------------l~~~l~~~Gv~i~~~~~v~~i~~ 254 (479)
T 2hqm_A 226 ----------ECIQNT-----------------------------------------ITDHYVKEGINVHKLSKIVKVEK 254 (479)
T ss_dssp ----------HHHHHH-----------------------------------------HHHHHHHHTCEEECSCCEEEEEE
T ss_pred ----------HHHHHH-----------------------------------------HHHHHHhCCeEEEeCCEEEEEEE
Confidence 111111 122333446666665 555543
Q ss_pred C------cEEEcCC-cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---ccc
Q 013435 329 H------AAEFIDG-SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLG 397 (443)
Q Consensus 329 ~------~v~~~~g-~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~ 397 (443)
+ .+.+.+| +++++|.||+|+|++|++ .+ +...++..+++|+|.+| ++++|+.|+|||+|||+.. ...
T Consensus 255 ~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~-~l~l~~~gl~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~ 332 (479)
T 2hqm_A 255 NVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL-GMGSENVGIKLNSHDQIIAD-EYQNTNVPNIYSLGDVVGKVELTPV 332 (479)
T ss_dssp CC-CCCEEEEETTSCEEEEESEEEECSCEEECC-CSSGGGGTCCBCTTSCBCCC-TTCBCSSTTEEECGGGTTSSCCHHH
T ss_pred cCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc-ccChhhcCceECCCCCEeEC-CCCccCCCCEEEEEecCCCcccHHH
Confidence 1 3667788 789999999999999998 66 56668888788999999 6778999999999999754 226
Q ss_pred chHHHHHHHHHHHHh
Q 013435 398 ASIDARRISEDIEHQ 412 (443)
Q Consensus 398 a~~~a~~~a~~i~~~ 412 (443)
|..||+.+|++|.+.
T Consensus 333 A~~~g~~aa~~i~~~ 347 (479)
T 2hqm_A 333 AIAAGRKLSNRLFGP 347 (479)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCC
Confidence 788999999999864
No 48
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=99.97 E-value=1.4e-32 Score=273.73 Aligned_cols=301 Identities=15% Similarity=0.130 Sum_probs=199.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCC----------ccccCCCCCCCCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPK----------QFCQLPLMPFPSNFP 102 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 102 (443)
.|||+|||||++|+++|..|++.|.+|+|||+.+.+||.|.+. +.+...+.... ..+.++... .
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~-----~ 76 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGE-----G 76 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGG-----G
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCC-----C
Confidence 5799999999999999999999999999999998899987642 11111000000 000000000 0
Q ss_pred CCCCHHH-----------HHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 103 TYPTKQQ-----------FLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 103 ~~~~~~~-----------~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
....... +...+.+++++.+++++.++.+ .++ . ..+.|.+.++ +...++||+||+||| +
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~--~--~~~~v~~~~G---~~~~~~~d~lviAtG--~ 146 (468)
T 2qae_A 77 VTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGS-FET--A--HSIRVNGLDG---KQEMLETKKTIIATG--S 146 (468)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-EEE--T--TEEEEEETTS---CEEEEEEEEEEECCC--E
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Eee--C--CEEEEEecCC---ceEEEEcCEEEECCC--C
Confidence 0011222 2223345566678888777644 332 3 5666665432 236799999999999 6
Q ss_pred CCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccch
Q 013435 172 EEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGL 251 (443)
Q Consensus 172 ~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~ 251 (443)
.|..|+++|.+.. .+++..+... ....+++++|||+|.+|+|+|..|.+.|.+||++.|.+ .++|..+
T Consensus 147 ~p~~p~~~g~~~~--~v~t~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d-------- 214 (468)
T 2qae_A 147 EPTELPFLPFDEK--VVLSSTGALA-LPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAP-RCAPTLD-------- 214 (468)
T ss_dssp EECCBTTBCCCSS--SEECHHHHHT-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSC--------
T ss_pred CcCCCCCCCCCcC--ceechHHHhh-cccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCC-cccccCC--------
Confidence 7888888876531 2333322222 12257899999999999999999999999999999988 4444321
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh-cCCCeEEecC--CcEEeC
Q 013435 252 SMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI-RSGNIKVCRA--IKRLTH 328 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~--v~~~~~ 328 (443)
....+ .+.+.+ ++.+|+++.+ +.++..
T Consensus 215 ---------~~~~~-----------------------------------------~l~~~l~~~~gv~i~~~~~v~~i~~ 244 (468)
T 2qae_A 215 ---------EDVTN-----------------------------------------ALVGALAKNEKMKFMTSTKVVGGTN 244 (468)
T ss_dssp ---------HHHHH-----------------------------------------HHHHHHHHHTCCEEECSCEEEEEEE
T ss_pred ---------HHHHH-----------------------------------------HHHHHHhhcCCcEEEeCCEEEEEEE
Confidence 11111 112333 4556777765 566654
Q ss_pred C--c--EEEc--CC--cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC-Cc---
Q 013435 329 H--A--AEFI--DG--SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR-GL--- 395 (443)
Q Consensus 329 ~--~--v~~~--~g--~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~-~~--- 395 (443)
+ + +.+. +| +++++|.||+|+|++|++..+ +...++..+++|+|.+| ++++|+.|+|||+|||+. ..
T Consensus 245 ~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~ 323 (468)
T 2qae_A 245 NGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIG-DHFETSIPDVYAIGDVVDKGPMLA 323 (468)
T ss_dssp CSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCC-TTSBCSSTTEEECGGGBSSSCSCH
T ss_pred cCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeEC-CCcccCCCCEEEeeccCCCCCccH
Confidence 2 2 3444 66 579999999999999998332 34457777778999999 778899999999999987 42
Q ss_pred ccchHHHHHHHHHHHHh
Q 013435 396 LGASIDARRISEDIEHQ 412 (443)
Q Consensus 396 ~~a~~~a~~~a~~i~~~ 412 (443)
..|..||+.+|.+|.+.
T Consensus 324 ~~A~~~g~~aa~~i~~~ 340 (468)
T 2qae_A 324 HKAEDEGVACAEILAGK 340 (468)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHcCC
Confidence 25788999999999863
No 49
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=99.97 E-value=7.3e-32 Score=271.59 Aligned_cols=303 Identities=15% Similarity=0.152 Sum_probs=208.7
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCCc----cccCCCCC-CCCCCCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPKQ----FCQLPLMP-FPSNFPTYP 105 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~ 105 (443)
...+||+|||||++|+++|..|++.|.+|+|||+++.+||.|.+. +.+...+..... ......+. ++.....++
T Consensus 41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 120 (523)
T 1mo9_A 41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVV 120 (523)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhh
Confidence 456899999999999999999999999999999998789887542 111111000000 00011111 222222234
Q ss_pred CHHHHHHHHH-------HHH-----HHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 106 TKQQFLTYLE-------TYT-----NHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 106 ~~~~~~~~l~-------~~~-----~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
+..++..++. .+. ++.++++++...+..++. .. |.+. + ..+.||++|+||| +.|
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~----~~--v~~~-g-----~~~~~d~lViATG--s~p 186 (523)
T 1mo9_A 121 GIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN----HT--VEAA-G-----KVFKAKNLILAVG--AGP 186 (523)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET----TE--EEET-T-----EEEEBSCEEECCC--EEC
T ss_pred hHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC----CE--EEEC-C-----EEEEeCEEEECCC--CCC
Confidence 4677776664 334 567888774556776652 33 4443 3 6799999999999 688
Q ss_pred ccCCCCCCCCCcccEeecCCCC-CCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchh
Q 013435 174 VVPYIEGMDGFRGPIFHSSSYK-TGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLS 252 (443)
Q Consensus 174 ~~p~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~ 252 (443)
..|.++|.+.. .+++..+.. ......+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++|...
T Consensus 187 ~~p~i~G~~~~--~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~-~~l~~~~--------- 254 (523)
T 1mo9_A 187 GTLDVPGVNAK--GVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE-PLKLIKD--------- 254 (523)
T ss_dssp CCCCSTTTTSB--TEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC-TTTTCCS---------
T ss_pred CCCCCCCcccC--cEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccccccc---------
Confidence 88889887641 133332222 2222334899999999999999999999999999999988 3444321
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--
Q 013435 253 MCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH-- 328 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~-- 328 (443)
....+ .+.+.+++.+++++.+ ++++..
T Consensus 255 --------~~~~~-----------------------------------------~l~~~l~~~GV~i~~~~~V~~i~~~~ 285 (523)
T 1mo9_A 255 --------NETRA-----------------------------------------YVLDRMKEQGMEIISGSNVTRIEEDA 285 (523)
T ss_dssp --------HHHHH-----------------------------------------HHHHHHHHTTCEEESSCEEEEEEECT
T ss_pred --------HHHHH-----------------------------------------HHHHHHHhCCcEEEECCEEEEEEEcC
Confidence 11111 1123334456777665 566643
Q ss_pred Cc------EEEcCCc-EEcccEEEEccCCCCCCCC-CccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---ccc
Q 013435 329 HA------AEFIDGS-IENYDAIILATGYKSNVPY-WLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLG 397 (443)
Q Consensus 329 ~~------v~~~~g~-~~~~D~vi~atG~~~~~~~-~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~ 397 (443)
++ +.+.+|+ ++++|.||+|+|+.|++ . ++...++..+++|+|.+| ++++|+.|+|||+|||+.. ...
T Consensus 286 ~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~-~~~l~~~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~~ 363 (523)
T 1mo9_A 286 NGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS-AELAKILGLDLGPKGEVLVN-EYLQTSVPNVYAVGDLIGGPMEMFK 363 (523)
T ss_dssp TSBEEEEEEEETTEEEEEECSCEEECCCCEECC-HHHHHHHTCCBCTTSCBCCC-TTSBCSSTTEEECGGGGCSSCSHHH
T ss_pred CCceEEEEEEECCCcEEEEcCEEEECcCCccCC-ccCHHHcCCccCCCCCEEEC-CCCccCCCCEEEEeecCCCcccHHH
Confidence 33 5667787 89999999999999997 4 566668877778999999 7888999999999999864 236
Q ss_pred chHHHHHHHHHHHH
Q 013435 398 ASIDARRISEDIEH 411 (443)
Q Consensus 398 a~~~a~~~a~~i~~ 411 (443)
|..||+.+|.+|.+
T Consensus 364 A~~~g~~aa~~i~g 377 (523)
T 1mo9_A 364 ARKSGCYAARNVMG 377 (523)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 78899999999986
No 50
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=99.97 E-value=2.4e-32 Score=272.96 Aligned_cols=308 Identities=16% Similarity=0.131 Sum_probs=200.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHH-cCCCEEEEe--------cCCCCCccccc-CCCCceeeecCCc----cccCCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTE-KGVPSLILE--------RANCIASLWQL-KTYDRLRLHLPKQ----FCQLPLMPFP 98 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~-~g~~v~iie--------~~~~~gg~w~~-~~~~~~~~~~~~~----~~~~~~~~~~ 98 (443)
..|||+|||||++|+++|..|++ .|.+|+||| +...+||+|.+ .+.|...+..... ......+.+.
T Consensus 2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~ 81 (490)
T 1fec_A 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWE 81 (490)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcc
Confidence 35799999999999999999999 999999999 35678887754 2222111000000 0000000000
Q ss_pred CCCC-CCCCHHHHHH-----------HHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCc-EEEEEeCEEE
Q 013435 99 SNFP-TYPTKQQFLT-----------YLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQE-ETVYLCQWLI 164 (443)
Q Consensus 99 ~~~~-~~~~~~~~~~-----------~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~-~~~i~a~~vI 164 (443)
.... .......+.. .+....++. +++++.++ +..++ . ..+.+.......++ ...+.||+||
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~--~--~~v~v~~~~~~~g~~~~~~~~d~lv 156 (490)
T 1fec_A 82 LDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGF-GALQD--N--HTVLVRESADPNSAVLETLDTEYIL 156 (490)
T ss_dssp CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESE-EEEEE--T--TEEEEESSSSTTSCEEEEEEEEEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeE-EEEee--C--CEEEEEeeccCCCCceEEEEcCEEE
Confidence 0000 0012223322 233344556 77776665 55553 2 44333320000111 2579999999
Q ss_pred EccCCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhc---CCccEEEEecCCccccc
Q 013435 165 VATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNY---NARPSLVVRDTVHVLPQ 241 (443)
Q Consensus 165 iAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~---g~~Vt~i~r~~~~~lp~ 241 (443)
+||| +.|..|.+||.+. +++..+.. .....+++++|||+|.+|+|+|..|.+. |.+||++.|.+ .++|.
T Consensus 157 iAtG--s~p~~p~i~g~~~----~~~~~~~~-~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~-~~l~~ 228 (490)
T 1fec_A 157 LATG--SWPQHLGIEGDDL----CITSNEAF-YLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD-MILRG 228 (490)
T ss_dssp ECCC--EEECCCCSBTGGG----CBCHHHHT-TCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS-SSSTT
T ss_pred EeCC--CCCCCCCCCCccc----eecHHHHh-hhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCC-Ccccc
Confidence 9999 6888888888642 12221111 1223478999999999999999999999 99999999988 34443
Q ss_pred cccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEec
Q 013435 242 EMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCR 321 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 321 (443)
.+ ....+ .+.+.+++.+|+++.
T Consensus 229 ~d-----------------~~~~~-----------------------------------------~l~~~l~~~GV~i~~ 250 (490)
T 1fec_A 229 FD-----------------SELRK-----------------------------------------QLTEQLRANGINVRT 250 (490)
T ss_dssp SC-----------------HHHHH-----------------------------------------HHHHHHHHTTEEEEE
T ss_pred cC-----------------HHHHH-----------------------------------------HHHHHHHhCCCEEEe
Confidence 21 11111 112334455777776
Q ss_pred C--CcEEeCC-----cEEEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC
Q 013435 322 A--IKRLTHH-----AAEFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR 393 (443)
Q Consensus 322 ~--v~~~~~~-----~v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~ 393 (443)
+ +.++..+ .+.+.+|+++++|.||+|+|+.|++..+ +...++..+++|+|.+| ++++|+.|+|||+|||+.
T Consensus 251 ~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd-~~~~t~~~~IyA~GD~~~ 329 (490)
T 1fec_A 251 HENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVD-AYSKTNVDNIYAIGDVTD 329 (490)
T ss_dssp TCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCC-TTCBCSSTTEEECGGGGC
T ss_pred CCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEEC-CCCccCCCCEEEEeccCC
Confidence 6 6666532 3667788899999999999999998545 45568877778999999 778899999999999986
Q ss_pred C---cccchHHHHHHHHHHHHh
Q 013435 394 G---LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 394 ~---~~~a~~~a~~~a~~i~~~ 412 (443)
. ...|..||+.+|.+|.+.
T Consensus 330 ~~~l~~~A~~~g~~aa~~i~g~ 351 (490)
T 1fec_A 330 RVMLTPVAINEGAAFVDTVFAN 351 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHHSS
T ss_pred CccCHHHHHHHHHHHHHHhcCC
Confidence 4 226788999999999863
No 51
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=99.97 E-value=6.5e-33 Score=273.26 Aligned_cols=295 Identities=19% Similarity=0.174 Sum_probs=192.1
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
....+||+||||||+|+++|..|++.|++|+|||+.+.+||.|... ++ .+....++
T Consensus 119 ~~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g---------------ip---------~~~~~~~~ 174 (456)
T 2vdc_G 119 RELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG---------------IP---------GFKLEKSV 174 (456)
T ss_dssp SSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT---------------SC---------TTTSCHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec---------------CC---------CccCCHHH
Confidence 3567899999999999999999999999999999999899877541 11 12223566
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
..+..+++++.++++++++.|. .. +++.+ ..+.||+||+|||.+ .++.+.+||.+. .+ +++
T Consensus 175 ~~~~~~~l~~~gv~~~~~~~v~--------~~--v~~~~------~~~~~d~vvlAtG~~-~~~~~~ipG~~~-~g-v~~ 235 (456)
T 2vdc_G 175 VERRVKLLADAGVIYHPNFEVG--------RD--ASLPE------LRRKHVAVLVATGVY-KARDIKAPGSGL-GN-IVA 235 (456)
T ss_dssp HHHHHHHHHHTTCEEETTCCBT--------TT--BCHHH------HHSSCSEEEECCCCC-EECCTTCSCCTT-TT-EEE
T ss_pred HHHHHHHHHHCCcEEEeCCEec--------cE--EEhhH------hHhhCCEEEEecCCC-CCCCCCCCCCcC-CC-cEE
Confidence 7777788888899988887551 11 33322 235699999999963 456677888653 22 221
Q ss_pred cCC---------CCC--------CCCCCCCeEEEEccCCCHHHHHHHHhhcCC-ccEEEEecCCccccccccCCCccchh
Q 013435 191 SSS---------YKT--------GELFRDKNVLVVGCGNSGMEVSLDLCNYNA-RPSLVVRDTVHVLPQEMIGRSTFGLS 252 (443)
Q Consensus 191 ~~~---------~~~--------~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~Vt~i~r~~~~~lp~~~~~~~~~~~~ 252 (443)
..+ +.+ .....+++|+|||+|++|+|+|..+.+.|. +||++.|++...+|....
T Consensus 236 a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~-------- 307 (456)
T 2vdc_G 236 ALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQR-------- 307 (456)
T ss_dssp HHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHH--------
T ss_pred HHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHH--------
Confidence 100 000 122568999999999999999999999987 499999988543443210
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh-cCCC---eEEecC-CcEEe
Q 013435 253 MCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI-RSGN---IKVCRA-IKRLT 327 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---v~v~~~-v~~~~ 327 (443)
+ .+.+. +.++.. ........+ .+++ +++..- ..+.+
T Consensus 308 ---------e-~~~~~------------~~Gv~~-----------------~~~~~~~~i~~~g~v~~v~~~~~~~~~~d 348 (456)
T 2vdc_G 308 ---------E-VAHAE------------EEGVEF-----------------IWQAAPEGFTGDTVVTGVRAVRIHLGVAD 348 (456)
T ss_dssp ---------H-HHHHH------------HTTCEE-----------------ECCSSSCCEEEEEEEETTEEEEEEEEEEE
T ss_pred ---------H-HHHHH------------HCCCEE-----------------EeCCCceEEeCCCcEEEEEEEEEEecccC
Confidence 0 00000 001100 000000000 0111 111000 00000
Q ss_pred CCc---EEEcCC--cEEcccEEEEccCCCCCCCC-CccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccc
Q 013435 328 HHA---AEFIDG--SIENYDAIILATGYKSNVPY-WLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGA 398 (443)
Q Consensus 328 ~~~---v~~~~g--~~~~~D~vi~atG~~~~~~~-~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a 398 (443)
.+| ....+| .++++|.||+|+|+.|+... ++...++..+++|++.+|...++|+.++|||+||+..+ +..|
T Consensus 349 ~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~~v~~A 428 (456)
T 2vdc_G 349 ATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWA 428 (456)
T ss_dssp ECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCCSHHHH
T ss_pred CcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCchHHHHH
Confidence 011 111123 46899999999999998633 56666887788899999944478999999999999764 4478
Q ss_pred hHHHHHHHHHHHHhhHH
Q 013435 399 SIDARRISEDIEHQWNS 415 (443)
Q Consensus 399 ~~~a~~~a~~i~~~l~~ 415 (443)
..+|+.+|.+|..+|..
T Consensus 429 ~~~G~~aA~~i~~~L~~ 445 (456)
T 2vdc_G 429 IRDGRDAAEGIHAYAKA 445 (456)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 89999999999999865
No 52
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.97 E-value=3.4e-32 Score=269.91 Aligned_cols=300 Identities=15% Similarity=0.173 Sum_probs=199.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecC----CccccCC--CCCCCCCCCCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLP----KQFCQLP--LMPFPSNFPTYPT 106 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~ 106 (443)
.|||+|||||++|+++|..|++.|.+|+|+|+. .+||.|.+. +.+...+... .....+. ...... . ...
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~--~-~~~ 78 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAEN--V-TID 78 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCS--C-EEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCC--C-ccC
Confidence 479999999999999999999999999999998 788877532 1111100000 0000000 000000 0 011
Q ss_pred HH-----------HHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 107 KQ-----------QFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 107 ~~-----------~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
.. .+..++.+.+++.+++++.++.+. + +. ..+.|++.++ + .++.||+||+||| +.|..
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-i--d~--~~v~V~~~~G---~-~~i~~d~lViATG--s~p~~ 147 (455)
T 1ebd_A 79 FAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF-V--DA--NTVRVVNGDS---A-QTYTFKNAIIATG--SRPIE 147 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE-E--ET--TEEEEEETTE---E-EEEECSEEEECCC--EEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-c--cC--CeEEEEeCCC---c-EEEEeCEEEEecC--CCCCC
Confidence 11 133344566677788888777543 3 23 5666765432 1 5799999999999 67888
Q ss_pred CCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhh
Q 013435 176 PYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCL 255 (443)
Q Consensus 176 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~ 255 (443)
|.++|.+. .+++..+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|...
T Consensus 148 ~~~~g~~~---~v~~~~~~~~-~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~------------ 210 (455)
T 1ebd_A 148 LPNFKFSN---RILDSTGALN-LGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG-EILSGFE------------ 210 (455)
T ss_dssp BTTBCCCS---SEECHHHHHT-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTSC------------
T ss_pred CCCCCccc---eEecHHHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-ccccccC------------
Confidence 88877543 2333322222 12246899999999999999999999999999999988 3444321
Q ss_pred hhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC--cE
Q 013435 256 LKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH--AA 331 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~--~v 331 (443)
....+. +.+.+++.+|+++.+ +.++..+ ++
T Consensus 211 -----~~~~~~-----------------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~~ 244 (455)
T 1ebd_A 211 -----KQMAAI-----------------------------------------IKKRLKKKGVEVVTNALAKGAEEREDGV 244 (455)
T ss_dssp -----HHHHHH-----------------------------------------HHHHHHHTTCEEEESEEEEEEEEETTEE
T ss_pred -----HHHHHH-----------------------------------------HHHHHHHCCCEEEeCCEEEEEEEeCCeE
Confidence 111111 122333456676665 5566532 23
Q ss_pred --EEc---CCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---ccchHHH
Q 013435 332 --EFI---DGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---LGASIDA 402 (443)
Q Consensus 332 --~~~---~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~~a~~~a 402 (443)
.+. +++++++|.||+|+|++|+++.+ +...++..+++|+|.+| ++++|+.|+|||+|||+... ..|..||
T Consensus 245 ~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g 323 (455)
T 1ebd_A 245 TVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVD-QQCRTSVPNIFAIGDIVPGPALAHKASYEG 323 (455)
T ss_dssp EEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCC-TTCBCSSTTEEECGGGSSSCCCHHHHHHHH
T ss_pred EEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeC-CCcccCCCCEEEEeccCCCcccHHHHHHHH
Confidence 333 45679999999999999998433 45557877778999999 67889999999999998642 2578899
Q ss_pred HHHHHHHHHh
Q 013435 403 RRISEDIEHQ 412 (443)
Q Consensus 403 ~~~a~~i~~~ 412 (443)
+.+|.+|.+.
T Consensus 324 ~~aa~~i~~~ 333 (455)
T 1ebd_A 324 KVAAEAIAGH 333 (455)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHcCC
Confidence 9999999863
No 53
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=99.97 E-value=2.8e-32 Score=270.69 Aligned_cols=298 Identities=17% Similarity=0.223 Sum_probs=196.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCC----ccccCCCCCCCCCCCCCCCH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPK----QFCQLPLMPFPSNFPTYPTK 107 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 107 (443)
..+||+|||||++|+++|..|++.|.+|+|||+. .+||.|.+. +.+...+.... .......+.+... ......
T Consensus 3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~ 80 (463)
T 2r9z_A 3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQAS-GGTLDW 80 (463)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC----CCH
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCH
Confidence 3579999999999999999999999999999998 688887642 11111100000 0000000010000 001123
Q ss_pred HHHHHH-----------HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 108 QQFLTY-----------LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 108 ~~~~~~-----------l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
..+..+ +.....+.+++++.++ +..++ . .. |.+ ++ .++.||+||+||| +.|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~--~--~~--v~~-~g-----~~~~~d~lviAtG--s~p~~p 145 (463)
T 2r9z_A 81 PRLVAGRDRYIGAINSFWDGYVERLGITRVDGH-ARFVD--A--HT--IEV-EG-----QRLSADHIVIATG--GRPIVP 145 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEE--T--TE--EEE-TT-----EEEEEEEEEECCC--EEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeE-EEEcc--C--CE--EEE-CC-----EEEEcCEEEECCC--CCCCCC
Confidence 333222 2334456677776664 44443 2 33 544 33 6799999999999 678888
Q ss_pred CCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhh
Q 013435 177 YIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 177 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
.+||.+. +++..+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.+++ .+++...
T Consensus 146 ~i~G~~~----~~~~~~~~~-~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~-~~l~~~~------------- 206 (463)
T 2r9z_A 146 RLPGAEL----GITSDGFFA-LQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALED-RLLFQFD------------- 206 (463)
T ss_dssp SCTTGGG----SBCHHHHHH-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSC-------------
T ss_pred CCCCccc----eecHHHHhh-hhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC-ccccccC-------------
Confidence 8888642 122211111 12246899999999999999999999999999999887 3333211
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC----c
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH----A 330 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~----~ 330 (443)
....+ .+.+.+++.+|+++.+ +.++..+ .
T Consensus 207 ----~~~~~-----------------------------------------~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~ 241 (463)
T 2r9z_A 207 ----PLLSA-----------------------------------------TLAENMHAQGIETHLEFAVAALERDAQGTT 241 (463)
T ss_dssp ----HHHHH-----------------------------------------HHHHHHHHTTCEEESSCCEEEEEEETTEEE
T ss_pred ----HHHHH-----------------------------------------HHHHHHHHCCCEEEeCCEEEEEEEeCCeEE
Confidence 01111 1123334456777766 5666532 3
Q ss_pred EEEcCCc-EEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---ccchHHHHHH
Q 013435 331 AEFIDGS-IENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---LGASIDARRI 405 (443)
Q Consensus 331 v~~~~g~-~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~~a~~~a~~~ 405 (443)
+.+.+|+ ++++|.||+|+|++|+++.+ +...++..+++|+|.+| ++++|+.|+|||+|||+... ..|..||+.+
T Consensus 242 v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~a 320 (463)
T 2r9z_A 242 LVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTD-AYQNTNVPGVYALGDITGRDQLTPVAIAAGRRL 320 (463)
T ss_dssp EEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCC-TTSBCSSTTEEECGGGGTSCCCHHHHHHHHHHH
T ss_pred EEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeEC-CCCccCCCCEEEEeecCCCcccHHHHHHHHHHH
Confidence 6778898 89999999999999998434 34457777778999999 77889999999999998542 2578899999
Q ss_pred HHHHHHh
Q 013435 406 SEDIEHQ 412 (443)
Q Consensus 406 a~~i~~~ 412 (443)
|.+|.+.
T Consensus 321 a~~i~g~ 327 (463)
T 2r9z_A 321 AERLFDG 327 (463)
T ss_dssp HHHHHSC
T ss_pred HHHHcCC
Confidence 9999863
No 54
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=99.97 E-value=1e-32 Score=274.19 Aligned_cols=297 Identities=14% Similarity=0.124 Sum_probs=197.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeec----CCccccCCCCCCCCCCCCCCCHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHL----PKQFCQLPLMPFPSNFPTYPTKQ 108 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 108 (443)
.|||+|||||++|+++|..|++.|++|+|+|+ ..+||+|.+ .+.+...+.. ......++.+.+..... .....
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~-~~~~~ 82 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGES-RFDWA 82 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCC-EECHH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCC-CcCHH
Confidence 58999999999999999999999999999999 678887754 1111110000 00000011000000000 01122
Q ss_pred -----------HHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEE-eecCCCcEEEEEeCEEEEccCCCCCCc-c
Q 013435 109 -----------QFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKT-QQGLKQEETVYLCQWLIVATGENAEEV-V 175 (443)
Q Consensus 109 -----------~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~-~~~~~~~~~~i~a~~vIiAtG~~~~p~-~ 175 (443)
.+..++..+..+.++++..+ .+..++ . . .+.+ .++ ..+.||++|+||| +.|. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~--~--~v~~~~~~-----~~~~~d~lviAtG--~~p~~~ 148 (463)
T 4dna_A 83 KLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELAG--P--N--TVKLLASG-----KTVTAERIVIAVG--GHPSPH 148 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEESS--S--S--EEEETTTT-----EEEEEEEEEECCC--EEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEee--C--C--EEEEecCC-----eEEEeCEEEEecC--CCcccC
Confidence 23333444555667776555 233332 1 2 2555 222 6899999999999 6788 8
Q ss_pred CCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhh
Q 013435 176 PYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCL 255 (443)
Q Consensus 176 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~ 255 (443)
|.+||.+. .++..+. ......+++++|||+|.+|+|+|..+...|.+|+++.+.+. ++|..+
T Consensus 149 p~i~G~~~----~~~~~~~-~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~-~l~~~~------------ 210 (463)
T 4dna_A 149 DALPGHEL----CITSNEA-FDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE-ILSRFD------------ 210 (463)
T ss_dssp TTSTTGGG----CBCHHHH-TTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTTSC------------
T ss_pred CCCCCccc----cccHHHH-hhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-cccccC------------
Confidence 88888653 1211111 12223578999999999999999999999999999998883 333221
Q ss_pred hhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC----
Q 013435 256 LKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH---- 329 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~---- 329 (443)
.... ..+.+.+++.+++++.+ ++++..+
T Consensus 211 -----~~~~-----------------------------------------~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~ 244 (463)
T 4dna_A 211 -----QDMR-----------------------------------------RGLHAAMEEKGIRILCEDIIQSVSADADGR 244 (463)
T ss_dssp -----HHHH-----------------------------------------HHHHHHHHHTTCEEECSCCEEEEEECTTSC
T ss_pred -----HHHH-----------------------------------------HHHHHHHHHCCCEEECCCEEEEEEEcCCCE
Confidence 1111 11223344567777765 6666542
Q ss_pred -cEE-EcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCcc---cchHHHH
Q 013435 330 -AAE-FIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGLL---GASIDAR 403 (443)
Q Consensus 330 -~v~-~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~~---~a~~~a~ 403 (443)
.+. +.+|+ +++|.||+|+|+.|++..+ +...++..+++|++.+| ++++|+.|+|||+|||+.... .|..||+
T Consensus 245 ~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~ 322 (463)
T 4dna_A 245 RVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVD-AFSRTSTPGIYALGDVTDRVQLTPVAIHEAM 322 (463)
T ss_dssp EEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCC-TTCBCSSTTEEECSGGGSSCCCHHHHHHHHH
T ss_pred EEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeEC-cCCCCCCCCEEEEEecCCCCCChHHHHHHHH
Confidence 356 67787 9999999999999998433 45568888888999999 778899999999999987432 6788999
Q ss_pred HHHHHHHHh
Q 013435 404 RISEDIEHQ 412 (443)
Q Consensus 404 ~~a~~i~~~ 412 (443)
.+|++|.+.
T Consensus 323 ~aa~~i~g~ 331 (463)
T 4dna_A 323 CFIETEYKN 331 (463)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHcCC
Confidence 999999864
No 55
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.97 E-value=2e-33 Score=270.44 Aligned_cols=278 Identities=16% Similarity=0.188 Sum_probs=193.8
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
.-..|++|||||++|+++|..|++.| +|+|+|+++.++ |.....+. .+... ...+++.
T Consensus 6 ~~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~--~~~~~l~~----------~~~g~---------~~~~~~~ 63 (367)
T 1xhc_A 6 HHGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY--YSKPMLSH----------YIAGF---------IPRNRLF 63 (367)
T ss_dssp ---CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC--CCSTTHHH----------HHTTS---------SCGGGGC
T ss_pred cCCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc--cccchhHH----------HHhCC---------CCHHHhc
Confidence 34568999999999999999999999 999999987542 11100000 00000 0111111
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
.+..+++++.+++++.+++|+.++... . .|+ .++ .++.||+||+||| ++|..|++||.+ .+++.
T Consensus 64 ~~~~~~~~~~~v~~~~g~~v~~id~~~--~--~V~-~~g-----~~~~~d~lViATG--s~p~~p~i~G~~----~v~~~ 127 (367)
T 1xhc_A 64 PYSLDWYRKRGIEIRLAEEAKLIDRGR--K--VVI-TEK-----GEVPYDTLVLATG--ARAREPQIKGKE----YLLTL 127 (367)
T ss_dssp SSCHHHHHHHTEEEECSCCEEEEETTT--T--EEE-ESS-----CEEECSEEEECCC--EEECCCCSBTGG----GEECC
T ss_pred cCCHHHHHhCCcEEEECCEEEEEECCC--C--EEE-ECC-----cEEECCEEEECCC--CCCCCCCCCCcC----CEEEE
Confidence 122334456788888898899887643 2 355 443 5799999999999 788888888832 23332
Q ss_pred CCCCCCCCC-----CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHH
Q 013435 192 SSYKTGELF-----RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQ 266 (443)
Q Consensus 192 ~~~~~~~~~-----~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (443)
....+.... ++++++|||+|.+|+|+|..|++.|.+||++.|.+ .++| . +....+
T Consensus 128 ~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~-~-----------------~~~~~~- 187 (367)
T 1xhc_A 128 RTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA-MFLG-L-----------------DEELSN- 187 (367)
T ss_dssp CSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS-CCTT-C-----------------CHHHHH-
T ss_pred cCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC-eecc-C-----------------CHHHHH-
Confidence 222111111 35899999999999999999999999999999887 3444 1 111111
Q ss_pred HHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCcEEEcCCcEEcccEE
Q 013435 267 FLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHAAEFIDGSIENYDAI 344 (443)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~v~~~~g~~~~~D~v 344 (443)
.+.+.+++.+|+++.+ ++++..+++.+++|+ +++|.|
T Consensus 188 ----------------------------------------~l~~~l~~~gV~i~~~~~v~~i~~~~v~~~~g~-i~~D~v 226 (367)
T 1xhc_A 188 ----------------------------------------MIKDMLEETGVKFFLNSELLEANEEGVLTNSGF-IEGKVK 226 (367)
T ss_dssp ----------------------------------------HHHHHHHHTTEEEECSCCEEEECSSEEEETTEE-EECSCE
T ss_pred ----------------------------------------HHHHHHHHCCCEEEcCCEEEEEEeeEEEECCCE-EEcCEE
Confidence 1123444567888876 777777788998888 999999
Q ss_pred EEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------cccchHHHHHHHHHHHHh
Q 013435 345 ILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 345 i~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------~~~a~~~a~~~a~~i~~~ 412 (443)
|+|+|++|++ .++...++.. ++| +.+| ++++++.|+|||+|||+.. ...|..||+.+|++|.+.
T Consensus 227 i~a~G~~p~~-~ll~~~gl~~-~~g-i~Vd-~~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~ 297 (367)
T 1xhc_A 227 ICAIGIVPNV-DLARRSGIHT-GRG-ILID-DNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE 297 (367)
T ss_dssp EEECCEEECC-HHHHHTTCCB-SSS-EECC-TTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred EECcCCCcCH-HHHHhCCCCC-CCC-EEEC-CCcccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCC
Confidence 9999999998 4666667766 355 8888 7788999999999999631 225778999999999864
No 56
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=99.97 E-value=2.3e-32 Score=271.79 Aligned_cols=300 Identities=16% Similarity=0.160 Sum_probs=197.2
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCC----ccc-cCCCCCCCCCCCCCCCHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPK----QFC-QLPLMPFPSNFPTYPTKQ 108 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~ 108 (443)
+||+|||||++|+++|..|++.|.+|+|+|+. .+||.|.+. +.+...+.... ... .+.....+.. ......
T Consensus 4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 80 (464)
T 2a8x_A 4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGE--VTFDYG 80 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEEC--CEECHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCC--CccCHH
Confidence 78999999999999999999999999999998 678776431 11111000000 000 0000000000 001111
Q ss_pred -----------HHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCC
Q 013435 109 -----------QFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPY 177 (443)
Q Consensus 109 -----------~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~ 177 (443)
.+...+.+.+++.+++++.++.+. + +. ..+.|.+.++ +..+++||+||+||| +.|..|.
T Consensus 81 ~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-i--d~--~~v~V~~~~G---~~~~~~~d~lViAtG--~~~~~~~ 150 (464)
T 2a8x_A 81 IAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-A--DA--NTLLVDLNDG---GTESVTFDNAIIATG--SSTRLVP 150 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-S--SS--SEEEEEETTS---CCEEEEEEEEEECCC--EEECCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cC--CeEEEEeCCC---ceEEEEcCEEEECCC--CCCCCCC
Confidence 223334556667788887776543 2 22 5666665432 225799999999999 5777777
Q ss_pred CCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhh
Q 013435 178 IEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLK 257 (443)
Q Consensus 178 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~ 257 (443)
++|.+. .+++..+.... ...+++++|||+|.+|+|+|..|.+.|.+||++.|.+ .++|..+.
T Consensus 151 ~~g~~~---~~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~------------- 212 (464)
T 2a8x_A 151 GTSLSA---NVVTYEEQILS-RELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLP-RALPNEDA------------- 212 (464)
T ss_dssp TCCCBT---TEECHHHHHTC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCH-------------
T ss_pred CCCCCc---eEEecHHHhhc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCH-------------
Confidence 777553 23333222221 2246899999999999999999999999999999988 45453211
Q ss_pred hchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC--c--E
Q 013435 258 WFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH--A--A 331 (443)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~--~--v 331 (443)
...+. +.+.+++.+|+++.+ +.++..+ + +
T Consensus 213 ----~~~~~-----------------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v 247 (464)
T 2a8x_A 213 ----DVSKE-----------------------------------------IEKQFKKLGVTILTATKVESIADGGSQVTV 247 (464)
T ss_dssp ----HHHHH-----------------------------------------HHHHHHHHTCEEECSCEEEEEEECSSCEEE
T ss_pred ----HHHHH-----------------------------------------HHHHHHHcCCEEEeCcEEEEEEEcCCeEEE
Confidence 11111 122233445666665 5566532 2 3
Q ss_pred EEc-CC--cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---ccchHHHHH
Q 013435 332 EFI-DG--SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---LGASIDARR 404 (443)
Q Consensus 332 ~~~-~g--~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~~a~~~a~~ 404 (443)
.+. +| +++++|.||+|+|++|++..+ +...++..+++|+|.+| ++++|+.|+|||+|||+... ..|..||+.
T Consensus 248 ~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~ 326 (464)
T 2a8x_A 248 TVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVD-DYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVV 326 (464)
T ss_dssp EEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCC-TTSBCSSTTEEECGGGGCSSCSHHHHHHHHHH
T ss_pred EEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeEC-cCCccCCCCEEEeECcCCCccCHHHHHHHHHH
Confidence 343 56 579999999999999998333 34457777778999999 77889999999999998642 357889999
Q ss_pred HHHHHHH
Q 013435 405 ISEDIEH 411 (443)
Q Consensus 405 ~a~~i~~ 411 (443)
+|.+|.+
T Consensus 327 aa~~i~g 333 (464)
T 2a8x_A 327 AAETIAG 333 (464)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9999986
No 57
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=99.97 E-value=3.1e-32 Score=272.08 Aligned_cols=321 Identities=15% Similarity=0.114 Sum_probs=204.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecC----CccccCCCCCCCCCCCCCCCHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLP----KQFCQLPLMPFPSNFPTYPTKQ 108 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 108 (443)
.|||+|||||++|+++|..|++.|++|+|+|+ ..+||.|.+ .+.+...+... .....++.+.+..... .....
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~ 103 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADP-IFNWE 103 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCC-EECHH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCC-ccCHH
Confidence 58999999999999999999999999999999 568887654 11221110000 0000000010000000 01122
Q ss_pred -----------HHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEe-ecCCCcEEEEEeCEEEEccCCCCCCc-c
Q 013435 109 -----------QFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQ-QGLKQEETVYLCQWLIVATGENAEEV-V 175 (443)
Q Consensus 109 -----------~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~i~a~~vIiAtG~~~~p~-~ 175 (443)
.+..++.....+.++++..+ .+..++ . .. +... ++ ..+.||++|+||| +.|. .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~--~--~~--v~v~~~~-----~~~~~d~lviAtG--~~p~~~ 169 (484)
T 3o0h_A 104 KLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD--E--HT--LELSVTG-----ERISAEKILIATG--AKIVSN 169 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--T--TE--EEETTTC-----CEEEEEEEEECCC--EEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee--C--CE--EEEecCC-----eEEEeCEEEEccC--CCcccC
Confidence 23334445556667776655 344443 1 33 4443 22 6799999999999 6777 7
Q ss_pred CCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhh
Q 013435 176 PYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCL 255 (443)
Q Consensus 176 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~ 255 (443)
|.++|.+. +.++.........+++++|||+|.+|+|+|..+.+.|.+|+++.+.+. ++|...
T Consensus 170 p~i~G~~~-----~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~-~l~~~~------------ 231 (484)
T 3o0h_A 170 SAIKGSDL-----CLTSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDL-ILRNFD------------ 231 (484)
T ss_dssp --CBTGGG-----SBCTTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTTSC------------
T ss_pred CCCCCccc-----cccHHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCc-cccccC------------
Confidence 88888653 222222222234578999999999999999999999999999998873 333221
Q ss_pred hhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC----
Q 013435 256 LKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH---- 329 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~---- 329 (443)
....+ .+.+.+++.+++++.+ ++++..+
T Consensus 232 -----~~~~~-----------------------------------------~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v 265 (484)
T 3o0h_A 232 -----YDLRQ-----------------------------------------LLNDAMVAKGISIIYEATVSQVQSTENCY 265 (484)
T ss_dssp -----HHHHH-----------------------------------------HHHHHHHHHTCEEESSCCEEEEEECSSSE
T ss_pred -----HHHHH-----------------------------------------HHHHHHHHCCCEEEeCCEEEEEEeeCCEE
Confidence 11111 1123333446677665 6666543
Q ss_pred cEEEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCcc---cchHHHHHH
Q 013435 330 AAEFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGLL---GASIDARRI 405 (443)
Q Consensus 330 ~v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~~---~a~~~a~~~ 405 (443)
.+.+.+|+++++|.||+|+|++|++..+ +...++..+++|++.+| ++.+++.|+|||+|||+.... .|..+|+.+
T Consensus 266 ~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~a 344 (484)
T 3o0h_A 266 NVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVD-EKMTTNVSHIWAVGDVTGHIQLTPVAIHDAMCF 344 (484)
T ss_dssp EEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCC-TTSBCSSTTEEECGGGGTSCCCHHHHHHHHHHH
T ss_pred EEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeEC-CCCCCCCCCEEEEEecCCCCcCHHHHHHHHHHH
Confidence 3777889899999999999999998433 34457877888999999 778899999999999987422 678899999
Q ss_pred HHHHHHhhHHHHHhHhhhhccccCCCCCcc
Q 013435 406 SEDIEHQWNSEAKKLMAFSRSLPLPPNQDL 435 (443)
Q Consensus 406 a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 435 (443)
|++|.+...........+...+..|+...+
T Consensus 345 a~~i~~~~~~~~~~~~~p~~~~~~p~~a~v 374 (484)
T 3o0h_A 345 VKNAFENTSTTPDYDLITTAVFSQPEIGTV 374 (484)
T ss_dssp HHHHHC---CCCCCTTCCEEECCSSCEEEE
T ss_pred HHHHcCCCCCcCCCCCCcEEEECCCCEEEe
Confidence 999987532222222233333444544443
No 58
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=99.97 E-value=7.6e-33 Score=271.41 Aligned_cols=285 Identities=22% Similarity=0.218 Sum_probs=198.7
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCC--EEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVP--SLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~--v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
.+.+||+|||||++|+++|..|++.|.+ |+|+|+++.++. ....+. .. + . .+......
T Consensus 7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y-------~~~~l~--~~---~--~------~~~~~~~~ 66 (415)
T 3lxd_A 7 AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPY-------ERPPLS--KE---Y--L------AREKTFER 66 (415)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCB-------CSGGGG--TT---T--T------TTSSCSGG
T ss_pred CCCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCc-------CcccCC--HH---H--H------cCCCCHHH
Confidence 3567999999999999999999999986 999999875531 110000 00 0 0 00001111
Q ss_pred HHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEe
Q 013435 110 FLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIF 189 (443)
Q Consensus 110 ~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~ 189 (443)
+..+..++..+.+++++.+++|+.++... .. |.+.++ ..+.||++|+||| +.|..|.+||.+.. . +
T Consensus 67 ~~~~~~~~~~~~~i~~~~~~~v~~id~~~--~~--v~~~~g-----~~~~~d~lvlAtG--~~~~~~~i~g~~~~--~-v 132 (415)
T 3lxd_A 67 ICIRPAQFWEDKAVEMKLGAEVVSLDPAA--HT--VKLGDG-----SAIEYGKLIWATG--GDPRRLSCVGADLA--G-V 132 (415)
T ss_dssp GBSSCHHHHHHTTEEEEETCCEEEEETTT--TE--EEETTS-----CEEEEEEEEECCC--EECCCCBTTSSCCB--T-E
T ss_pred hccCCHHHHHHCCcEEEeCCEEEEEECCC--CE--EEECCC-----CEEEeeEEEEccC--CccCCCCCCCcccc--C-E
Confidence 22222344566788999998999997654 33 666654 6899999999999 68888888886531 1 2
Q ss_pred ecCCCCCC------CCCC-CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhH
Q 013435 190 HSSSYKTG------ELFR-DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVR 262 (443)
Q Consensus 190 ~~~~~~~~------~~~~-~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~ 262 (443)
+.....+. .... +++++|||+|.+|+|+|..+...|.+||++.+.+. +++... +..
T Consensus 133 ~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~-~l~~~~----------------~~~ 195 (415)
T 3lxd_A 133 HAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPR-VLARVA----------------GEA 195 (415)
T ss_dssp ECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-TTTTTS----------------CHH
T ss_pred EEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc-hhhhhc----------------CHH
Confidence 22111110 0123 78999999999999999999999999999999883 333211 111
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC-----cEEEcC
Q 013435 263 LVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH-----AAEFID 335 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~-----~v~~~~ 335 (443)
..+ .+.+.+++.+|+++.+ ++++..+ ++.+.+
T Consensus 196 ~~~-----------------------------------------~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~d 234 (415)
T 3lxd_A 196 LSE-----------------------------------------FYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQD 234 (415)
T ss_dssp HHH-----------------------------------------HHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESS
T ss_pred HHH-----------------------------------------HHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCC
Confidence 111 1123344557777765 6666543 478889
Q ss_pred CcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc--------------ccchHH
Q 013435 336 GSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL--------------LGASID 401 (443)
Q Consensus 336 g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~--------------~~a~~~ 401 (443)
|+++++|.||+|+|+.|++ .++...++..+ +| +.+| ++.+++.|+|||+|||+... ..|..|
T Consensus 235 G~~i~aD~Vv~a~G~~p~~-~l~~~~gl~~~-~g-i~vd-~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~q 310 (415)
T 3lxd_A 235 GSVIPADIVIVGIGIVPCV-GALISAGASGG-NG-VDVD-EFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDM 310 (415)
T ss_dssp SCEEECSEEEECSCCEESC-HHHHHTTCCCS-SS-EECC-TTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHH
T ss_pred CCEEEcCEEEECCCCccCh-HHHHhCCCCcC-CC-EEEC-CCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHH
Confidence 9999999999999999998 57776777663 56 8888 77889999999999987431 247789
Q ss_pred HHHHHHHHHHh
Q 013435 402 ARRISEDIEHQ 412 (443)
Q Consensus 402 a~~~a~~i~~~ 412 (443)
|+.+|++|.+.
T Consensus 311 g~~aa~~i~g~ 321 (415)
T 3lxd_A 311 ATAAAKDICGA 321 (415)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhcCC
Confidence 99999999865
No 59
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=99.97 E-value=1.9e-30 Score=258.28 Aligned_cols=332 Identities=21% Similarity=0.296 Sum_probs=198.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcC-----CCEEEEecCCCCCcccccCCC-CceeeecCCccccCCCCCCC--------
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKG-----VPSLILERANCIASLWQLKTY-DRLRLHLPKQFCQLPLMPFP-------- 98 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g-----~~v~iie~~~~~gg~w~~~~~-~~~~~~~~~~~~~~~~~~~~-------- 98 (443)
..+||+|||||++|+++|..|++.| .+|+|||+.+.+| |....+ +...+..+. ..++.....+
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~~~~~~~~~-~~~l~~~~~p~~~~~~~~ 105 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISF-LKDLVSLRNPTSPYSFVN 105 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCSSCBCSSCT-TSSSSTTTCTTCTTSHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCCCCcCCcch-hhccccccCCCCCCChhH
Confidence 5689999999999999999999999 9999999999887 655433 222221100 0000000000
Q ss_pred ------------CCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCC-CCeE--EEEEeecCCCcEEEEEeCEE
Q 013435 99 ------------SNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHL-SRLW--RVKTQQGLKQEETVYLCQWL 163 (443)
Q Consensus 99 ------------~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~-~~~~--~v~~~~~~~~~~~~i~a~~v 163 (443)
.....++...++.+|+.++++++++.++++++|++++..++ ...| .|++.++. ++..++.||+|
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~-g~~~~~~~d~l 184 (463)
T 3s5w_A 106 YLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNAD-GEELVRTTRAL 184 (463)
T ss_dssp HHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETT-SCEEEEEESEE
T ss_pred hhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCC-CceEEEEeCEE
Confidence 01123567899999999999999999999999999998621 1444 67766653 33358999999
Q ss_pred EEccCCCCCCccCCCCCCCCCcc--cEeecCCCCCC-CCC-----CCCeEEEEccCCCHHHHHHHHhhc--CCccEEEEe
Q 013435 164 IVATGENAEEVVPYIEGMDGFRG--PIFHSSSYKTG-ELF-----RDKNVLVVGCGNSGMEVSLDLCNY--NARPSLVVR 233 (443)
Q Consensus 164 IiAtG~~~~p~~p~~~g~~~~~~--~~~~~~~~~~~-~~~-----~~~~v~ViG~G~~~~e~a~~l~~~--g~~Vt~i~r 233 (443)
|+||| +.|.+|.. .+.+.+ .+++++.+.+. ... .+++|+|||+|.+|+|+|..|++. +.+|+++.|
T Consensus 185 VlAtG--~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r 260 (463)
T 3s5w_A 185 VVSPG--GTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILR 260 (463)
T ss_dssp EECCC--CEECCCGG--GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred EECCC--CCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEe
Confidence 99999 56666652 222223 56777665432 122 578999999999999999999999 899999999
Q ss_pred cCCccccccccCCCccchhhh---hhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCccccccc-ch
Q 013435 234 DTVHVLPQEMIGRSTFGLSMC---LLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVG-TL 309 (443)
Q Consensus 234 ~~~~~lp~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 309 (443)
++. ++|....+....-.... ....++......+........ +....+.. .+.+... +.
T Consensus 261 ~~~-~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~-----------~~~~~~~l~~ 322 (463)
T 3s5w_A 261 ASA-LKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTN------YSVVDTDL-----------IERIYGVFYR 322 (463)
T ss_dssp SSS-CCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGT------SSCBCHHH-----------HHHHHHHHHH
T ss_pred CCC-CcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccC------CCcCCHHH-----------HHHHHHHHHH
Confidence 984 66654321000000000 011122222222211110000 00000000 0000000 11
Q ss_pred hhh-cCCCeEEecC--CcEEeCC--c--EEEc---CCc--EEcccEEEEccCCCCC-CCCCccCcCcCccCCCCcCCCCC
Q 013435 310 AKI-RSGNIKVCRA--IKRLTHH--A--AEFI---DGS--IENYDAIILATGYKSN-VPYWLKDTEMFSEKDGFPRMEFP 376 (443)
Q Consensus 310 ~~~-~~~~v~v~~~--v~~~~~~--~--v~~~---~g~--~~~~D~vi~atG~~~~-~~~~~~~~~l~~~~~G~i~~~~~ 376 (443)
+.+ ...+++++.+ |+++..+ + +.+. +|+ ++++|.||+|||++|+ ...++.+..... |.+.+|.+
T Consensus 323 ~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~---g~i~v~~~ 399 (463)
T 3s5w_A 323 QKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL---GDHEIGRD 399 (463)
T ss_dssp HHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB---C--CCCTT
T ss_pred HHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh---CCcccCcc
Confidence 111 1257778777 6666543 2 5555 666 4899999999999999 224555443211 77888855
Q ss_pred CCCcC----CCceEEEeeccC
Q 013435 377 NGWKG----AHGLYAVGFNKR 393 (443)
Q Consensus 377 ~~~~~----~~~ifaiGd~~~ 393 (443)
+.... .++||++|||..
T Consensus 400 ~~~~~~~~~~~~Ifa~G~~~~ 420 (463)
T 3s5w_A 400 YRLQTDERCKVAIYAQGFSQA 420 (463)
T ss_dssp SBCCBCTTBCSEEEESSCCHH
T ss_pred cccccCCCCCCeEEEcCCCcc
Confidence 44332 567999999863
No 60
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=99.97 E-value=5e-33 Score=271.99 Aligned_cols=283 Identities=16% Similarity=0.177 Sum_probs=196.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCC--EEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVP--SLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~--v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
+++|+|||||++|+++|..|++.|.+ |+|+|+++.++. ....+. ..+. .....++.. .
T Consensus 2 ~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y-------~~~~l~--~~~~--~g~~~~~~~--~------- 61 (410)
T 3ef6_A 2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPY-------DRPSLS--KAVL--DGSLERPPI--L------- 61 (410)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSB-------CSGGGG--THHH--HTSSSSCCB--S-------
T ss_pred CCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCc-------CCcccc--HHHh--CCCCCHHHh--c-------
Confidence 45899999999999999999999987 999999886531 110000 0000 000000000 0
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
...++..+.+++++.+++|+.++... . .|.+.++ ..+.||+||+||| +.|..|++||.+. ..+++.
T Consensus 62 -~~~~~~~~~~i~~~~~~~v~~id~~~--~--~v~~~~g-----~~~~~d~lvlAtG--~~p~~~~ipG~~~--~~v~~~ 127 (410)
T 3ef6_A 62 -AEADWYGEARIDMLTGPEVTALDVQT--R--TISLDDG-----TTLSADAIVIATG--SRARTMALPGSQL--PGVVTL 127 (410)
T ss_dssp -SCTTHHHHTTCEEEESCCEEEEETTT--T--EEEETTS-----CEEECSEEEECCC--EEECCCCCTTTTS--TTEECC
T ss_pred -CCHHHHHHCCCEEEeCCEEEEEECCC--C--EEEECCC-----CEEECCEEEEccC--CcccCCCCCCccc--cceEEe
Confidence 01123456689999999999998654 3 3666654 6899999999999 6788888888652 122222
Q ss_pred CCCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHH
Q 013435 192 SSYKTG-----ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQ 266 (443)
Q Consensus 192 ~~~~~~-----~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (443)
....+. ....+++++|||+|.+|+|+|..|.+.|.+||++.+.+. +++.. ++....+.
T Consensus 128 ~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~-~l~~~----------------~~~~~~~~ 190 (410)
T 3ef6_A 128 RTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDE-LLVRV----------------LGRRIGAW 190 (410)
T ss_dssp CSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSHHH----------------HCHHHHHH
T ss_pred ccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc-cchhh----------------cCHHHHHH
Confidence 111111 123578999999999999999999999999999998883 32211 11111111
Q ss_pred HHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC----cEEEcCCcEEc
Q 013435 267 FLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH----AAEFIDGSIEN 340 (443)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~----~v~~~~g~~~~ 340 (443)
+.+.+++.+|+++.+ ++++..+ ++.+.+|++++
T Consensus 191 -----------------------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~ 229 (410)
T 3ef6_A 191 -----------------------------------------LRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFV 229 (410)
T ss_dssp -----------------------------------------HHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEE
T ss_pred -----------------------------------------HHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEE
Confidence 123333456777765 6677654 58889999999
Q ss_pred ccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC------------cccchHHHHHHHHH
Q 013435 341 YDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG------------LLGASIDARRISED 408 (443)
Q Consensus 341 ~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~------------~~~a~~~a~~~a~~ 408 (443)
+|.||+|+|+.|++ .++...++..+ +| +.+| ++.+++.|+|||+|||+.. +..|..||+.+|++
T Consensus 230 aD~Vv~a~G~~p~~-~l~~~~gl~~~-~g-i~vd-~~~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~ 305 (410)
T 3ef6_A 230 ADSALICVGAEPAD-QLARQAGLACD-RG-VIVD-HCGATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAA 305 (410)
T ss_dssp CSEEEECSCEEECC-HHHHHTTCCBS-SS-EECC-TTSBCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHH
T ss_pred cCEEEEeeCCeecH-HHHHhCCCccC-Ce-EEEc-cCeeECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHH
Confidence 99999999999998 57777788764 45 8888 7778999999999999753 13577899999999
Q ss_pred HHHh
Q 013435 409 IEHQ 412 (443)
Q Consensus 409 i~~~ 412 (443)
|.+.
T Consensus 306 i~g~ 309 (410)
T 3ef6_A 306 ILGK 309 (410)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 9875
No 61
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=99.97 E-value=9.4e-33 Score=273.71 Aligned_cols=291 Identities=18% Similarity=0.232 Sum_probs=197.5
Q ss_pred CCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
+||+|||||++|+++|..|++. |.+|+|+|+++.++..... +........... ...++..
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~-----~~~~~~g~~~~~-------------~~~~~~~ 62 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCG-----IALYLGKEIKNN-------------DPRGLFY 62 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGG-----HHHHHTTCBGGG-------------CGGGGBS
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCccccc-----chhhhcCCcccC-------------CHHHhhh
Confidence 5899999999999999999998 9999999998765421110 000000000000 0011111
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
.+.+.+.+.+++++.+++|..++... ..+.+... ..++..+++||++|+||| ++|..|++||.+. ..+++..
T Consensus 63 ~~~~~~~~~gv~~~~~~~v~~i~~~~--~~v~v~~~--~~g~~~~~~~d~lviAtG--s~p~~p~i~g~~~--~~v~~~~ 134 (452)
T 2cdu_A 63 SSPEELSNLGANVQMRHQVTNVDPET--KTIKVKDL--ITNEEKTEAYDKLIMTTG--SKPTVPPIPGIDS--SRVYLCK 134 (452)
T ss_dssp CCHHHHHHTTCEEEESEEEEEEEGGG--TEEEEEET--TTCCEEEEECSEEEECCC--EEECCCCCTTTTS--TTEEECS
T ss_pred cCHHHHHHcCCEEEeCCEEEEEEcCC--CEEEEEec--CCCceEEEECCEEEEccC--CCcCCCCCCCCCC--CCEEEeC
Confidence 12334456788888899999998766 55544431 111226899999999999 7888888888753 1233332
Q ss_pred CCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHH
Q 013435 193 SYKTG-----ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQF 267 (443)
Q Consensus 193 ~~~~~-----~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (443)
.+.+. ....+++++|||+|.+|+|+|..|.+.|.+||++.+.+ .++|... .....+.
T Consensus 135 ~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~----------------~~~~~~~- 196 (452)
T 2cdu_A 135 NYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHE-RVLYKYF----------------DKEFTDI- 196 (452)
T ss_dssp SHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS-STTTTTS----------------CHHHHHH-
T ss_pred cHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCC-chhhhhh----------------hhhHHHH-
Confidence 22111 12357899999999999999999999999999999988 3444211 1111111
Q ss_pred HHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC-Cc-E--EEcCCcEEcc
Q 013435 268 LLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH-HA-A--EFIDGSIENY 341 (443)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~-~~-v--~~~~g~~~~~ 341 (443)
+.+.+++.+|+++.+ ++++.. ++ + ...+|+++++
T Consensus 197 ----------------------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~ 236 (452)
T 2cdu_A 197 ----------------------------------------LAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKS 236 (452)
T ss_dssp ----------------------------------------HHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred ----------------------------------------HHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEEC
Confidence 123344556777765 666654 22 2 2347888999
Q ss_pred cEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------------cccchHHHHHHHHH
Q 013435 342 DAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------------LLGASIDARRISED 408 (443)
Q Consensus 342 D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------------~~~a~~~a~~~a~~ 408 (443)
|.||+|+|++|++ .++... +..+++|+|.+| ++++|+.|+|||+|||+.. ...|..||+.+|++
T Consensus 237 D~vv~a~G~~p~~-~ll~~~-l~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~ 313 (452)
T 2cdu_A 237 DIAILCIGFRPNT-ELLKGK-VAMLDNGAIITD-EYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLN 313 (452)
T ss_dssp SEEEECCCEEECC-GGGTTT-SCBCTTSCBCCC-TTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHT
T ss_pred CEEEECcCCCCCH-HHHHHh-hhcCCCCCEEEC-CCcCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHH
Confidence 9999999999998 566655 666778999999 7788999999999999852 22578899999999
Q ss_pred HHHh
Q 013435 409 IEHQ 412 (443)
Q Consensus 409 i~~~ 412 (443)
|.+.
T Consensus 314 i~g~ 317 (452)
T 2cdu_A 314 LTED 317 (452)
T ss_dssp SSSC
T ss_pred hCCC
Confidence 9753
No 62
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=99.97 E-value=1.4e-32 Score=274.96 Aligned_cols=307 Identities=12% Similarity=0.108 Sum_probs=194.6
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEec--------CCCCCcccccC-CCCceeeecCCc----cccCCCCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILER--------ANCIASLWQLK-TYDRLRLHLPKQ----FCQLPLMPFP 98 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~--------~~~~gg~w~~~-~~~~~~~~~~~~----~~~~~~~~~~ 98 (443)
.+.|||+|||||++|+++|..|++.|.+|+|||+ ...+||+|.+. +.|...+..... ......+.+.
T Consensus 4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~ 83 (488)
T 3dgz_A 4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWE 83 (488)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcc
Confidence 3568999999999999999999999999999997 55689887642 222211110000 0000011110
Q ss_pred CCCCCCCCHHHHHHHHHH-----------HHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEcc
Q 013435 99 SNFPTYPTKQQFLTYLET-----------YTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVAT 167 (443)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~-----------~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAt 167 (443)
...........+..+... ...+.++++..+. +..++ ...+.|.+.+ ++..++.||+||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~-~~~~~----~~~v~v~~~~---g~~~~~~~d~lViAT 155 (488)
T 3dgz_A 84 VAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK-ASFVD----EHTVRGVDKG---GKATLLSAEHIVIAT 155 (488)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCE-EEESS----SSEEEEECTT---SCEEEEEEEEEEECC
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc----CCeEEEEeCC---CceEEEECCEEEEcC
Confidence 000112334444443322 2334455543332 32221 1444454432 233689999999999
Q ss_pred CCCCCCccCC-CCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCC
Q 013435 168 GENAEEVVPY-IEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGR 246 (443)
Q Consensus 168 G~~~~p~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~ 246 (443)
| +.|..|. +||.... .++..+.. .....+++++|||+|.+|+|+|..|++.|.+||++.|.+ ++|..+
T Consensus 156 G--s~p~~p~~i~G~~~~---~~~~~~~~-~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~--~l~~~d--- 224 (488)
T 3dgz_A 156 G--GRPRYPTQVKGALEY---GITSDDIF-WLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI--PLRGFD--- 224 (488)
T ss_dssp C--EEECCCSSCBTHHHH---CBCHHHHT-TCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--SSTTSC---
T ss_pred C--CCCCCCCCCCCcccc---cCcHHHHH-hhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc--ccccCC---
Confidence 9 7888887 8886431 12222211 222356789999999999999999999999999998864 333221
Q ss_pred CccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--Cc
Q 013435 247 STFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IK 324 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~ 324 (443)
....+ .+.+.+++.+|+++.+ +.
T Consensus 225 --------------~~~~~-----------------------------------------~l~~~l~~~gv~~~~~~~v~ 249 (488)
T 3dgz_A 225 --------------QQMSS-----------------------------------------LVTEHMESHGTQFLKGCVPS 249 (488)
T ss_dssp --------------HHHHH-----------------------------------------HHHHHHHHTTCEEEETEEEE
T ss_pred --------------HHHHH-----------------------------------------HHHHHHHHCCCEEEeCCEEE
Confidence 11111 1123344456666665 45
Q ss_pred EEeC--Cc---EEEcC---Cc--EEcccEEEEccCCCCCCCCC-ccCcCcCcc-CCCCcCCCCCCCCcCCCceEEEeecc
Q 013435 325 RLTH--HA---AEFID---GS--IENYDAIILATGYKSNVPYW-LKDTEMFSE-KDGFPRMEFPNGWKGAHGLYAVGFNK 392 (443)
Q Consensus 325 ~~~~--~~---v~~~~---g~--~~~~D~vi~atG~~~~~~~~-~~~~~l~~~-~~G~i~~~~~~~~~~~~~ifaiGd~~ 392 (443)
++.. ++ +.+.+ |+ ++++|.||+|+|++|++..+ +...++..+ ++|++.+| ++++|+.|+|||+|||+
T Consensus 250 ~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd-~~~~t~~~~IyA~GD~~ 328 (488)
T 3dgz_A 250 HIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVD-AQEATSVPHIYAIGDVA 328 (488)
T ss_dssp EEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCC-TTSBCSSTTEEECGGGB
T ss_pred EEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeEC-CCCccCCCCEEEeEEec
Confidence 5532 11 44443 44 47899999999999998433 445578777 78999999 78889999999999996
Q ss_pred CC----cccchHHHHHHHHHHHHhh
Q 013435 393 RG----LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 393 ~~----~~~a~~~a~~~a~~i~~~l 413 (443)
.+ ...|..+|+.+|++|.+..
T Consensus 329 ~~~~~~~~~A~~~g~~aa~~i~g~~ 353 (488)
T 3dgz_A 329 EGRPELTPTAIKAGKLLAQRLFGKS 353 (488)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCcchhHHHHHHHHHHHHHcCCC
Confidence 32 2367889999999998653
No 63
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=99.97 E-value=1.3e-31 Score=267.40 Aligned_cols=304 Identities=14% Similarity=0.082 Sum_probs=196.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCC-CCceeeecCC----ccc-cCCCCCCCCCCCCCCCH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKT-YDRLRLHLPK----QFC-QLPLMPFPSNFPTYPTK 107 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~-~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~ 107 (443)
.+||+|||||++|+++|..|++.|++|+|+|+.+.+||+|.+.. .+...+.... .+. .+.....+.........
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 84 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV 84 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence 47999999999999999999999999999999888999875421 1111000000 000 00000000000000122
Q ss_pred HHHH-----------HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEE------EEeCEEEEccCCC
Q 013435 108 QQFL-----------TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETV------YLCQWLIVATGEN 170 (443)
Q Consensus 108 ~~~~-----------~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~------i~a~~vIiAtG~~ 170 (443)
..+. ..+...+++.+++++.++.+.. +. ..+.|.+.++ +... ++||+||+|||.
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~---~~--~~v~V~~~~G---~~~~~~~~~~i~~d~lViAtGs- 155 (478)
T 1v59_A 85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE---DE--TKIRVTPVDG---LEGTVKEDHILDVKNIIVATGS- 155 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES---SS--SEEEEECCTT---CTTCCSSCEEEEEEEEEECCCE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc---cC--CeEEEEecCC---CcccccccceEEeCEEEECcCC-
Confidence 2222 2234456667888888876541 22 5666665443 1124 999999999994
Q ss_pred CCCccCCCCCCCCCcc-cEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCcc
Q 013435 171 AEEVVPYIEGMDGFRG-PIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTF 249 (443)
Q Consensus 171 ~~p~~p~~~g~~~~~~-~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~ 249 (443)
.|. .+||.+. .+ .+.+..+.... ...+++++|||+|.+|+|+|..|++.|.+||++.|++ .++|...
T Consensus 156 -~p~--~~~g~~~-~~~~v~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~------ 223 (478)
T 1v59_A 156 -EVT--PFPGIEI-DEEKIVSSTGALSL-KEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP-QIGASMD------ 223 (478)
T ss_dssp -EEC--CCTTCCC-CSSSEECHHHHTTC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSSSSC------
T ss_pred -CCC--CCCCCCC-CCceEEcHHHHHhh-hccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC-ccccccC------
Confidence 442 3455432 22 23333222222 2247899999999999999999999999999999988 4445321
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe
Q 013435 250 GLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT 327 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~ 327 (443)
....+ .+.+.+++.+|+++.+ ++++.
T Consensus 224 -----------~~~~~-----------------------------------------~l~~~l~~~gv~i~~~~~v~~i~ 251 (478)
T 1v59_A 224 -----------GEVAK-----------------------------------------ATQKFLKKQGLDFKLSTKVISAK 251 (478)
T ss_dssp -----------HHHHH-----------------------------------------HHHHHHHHTTCEEECSEEEEEEE
T ss_pred -----------HHHHH-----------------------------------------HHHHHHHHCCCEEEeCCEEEEEE
Confidence 01111 1123334456777765 56665
Q ss_pred C--C----cEEEc-----CCcEEcccEEEEccCCCCCCCC-CccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc
Q 013435 328 H--H----AAEFI-----DGSIENYDAIILATGYKSNVPY-WLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL 395 (443)
Q Consensus 328 ~--~----~v~~~-----~g~~~~~D~vi~atG~~~~~~~-~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~ 395 (443)
. + .+.+. +++++++|.||+|+|++|++.. ++...++..+++|+|.+| ++++++.|+|||+|||+...
T Consensus 252 ~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~ 330 (478)
T 1v59_A 252 RNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVID-DQFNSKFPHIKVVGDVTFGP 330 (478)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCC-TTSBCSSTTEEECGGGSSSC
T ss_pred EecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeEC-cCCccCCCCEEEeeccCCCc
Confidence 3 2 24444 3467999999999999999844 456668877778999999 77889999999999998642
Q ss_pred ---ccchHHHHHHHHHHHH
Q 013435 396 ---LGASIDARRISEDIEH 411 (443)
Q Consensus 396 ---~~a~~~a~~~a~~i~~ 411 (443)
..|..||+.+|++|.+
T Consensus 331 ~~~~~A~~~g~~aa~~i~~ 349 (478)
T 1v59_A 331 MLAHKAEEEGIAAVEMLKT 349 (478)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcC
Confidence 2678899999999986
No 64
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=99.97 E-value=1.1e-30 Score=260.75 Aligned_cols=306 Identities=16% Similarity=0.187 Sum_probs=196.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC------CCcccccC-CCCceeeecCCc-ccc----CCCCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANC------IASLWQLK-TYDRLRLHLPKQ-FCQ----LPLMPFPSN 100 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~------~gg~w~~~-~~~~~~~~~~~~-~~~----~~~~~~~~~ 100 (443)
..|||+|||||++|+++|..|++.|++|+|||+.+. +||+|.+. +.+...+..... ... +..+.+...
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~ 81 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG 81 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 468999999999999999999999999999999873 55555331 111110000000 000 000000000
Q ss_pred CCCCCCHHHHH-----------HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 101 FPTYPTKQQFL-----------TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 101 ~~~~~~~~~~~-----------~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
........+. ..+....++.++++..+..+ .+ +. ..+.|...++ +...+.||+||+|||
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~--~~--~~~~v~~~~g---~~~~~~~d~lvlAtG- 151 (476)
T 3lad_A 82 -EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGK-LL--AG--KKVEVTAADG---SSQVLDTENVILASG- 151 (476)
T ss_dssp -CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEE-EC--ST--TCEEEECTTS---CEEEECCSCEEECCC-
T ss_pred -CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Ee--cC--CEEEEEcCCC---ceEEEEcCEEEEcCC-
Confidence 0011222222 22334455567776665432 22 22 5555654332 336899999999999
Q ss_pred CCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCcc
Q 013435 170 NAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTF 249 (443)
Q Consensus 170 ~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~ 249 (443)
+.|..|+.++... ..++++.+.. .....+++++|||+|.+|+|+|..|.+.|.+||++.|.+ .++|...
T Consensus 152 -~~p~~~~~~~~~~--~~v~~~~~~~-~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~------ 220 (476)
T 3lad_A 152 -SKPVEIPPAPVDQ--DVIVDSTGAL-DFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD-KFLPAVD------ 220 (476)
T ss_dssp -EEECCCTTSCCCS--SSEEEHHHHT-SCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTSC------
T ss_pred -CCCCCCCCCCCCc--ccEEechhhh-ccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcccC------
Confidence 5666554433221 2233332222 223457899999999999999999999999999999988 4444321
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe
Q 013435 250 GLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT 327 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~ 327 (443)
.... ..+.+.+++.+|+++.+ +.++.
T Consensus 221 -----------~~~~-----------------------------------------~~l~~~l~~~Gv~v~~~~~v~~i~ 248 (476)
T 3lad_A 221 -----------EQVA-----------------------------------------KEAQKILTKQGLKILLGARVTGTE 248 (476)
T ss_dssp -----------HHHH-----------------------------------------HHHHHHHHHTTEEEEETCEEEEEE
T ss_pred -----------HHHH-----------------------------------------HHHHHHHHhCCCEEEECCEEEEEE
Confidence 1111 11223344567777766 66665
Q ss_pred CC--c--EEEcCC---cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cc
Q 013435 328 HH--A--AEFIDG---SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LL 396 (443)
Q Consensus 328 ~~--~--v~~~~g---~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~ 396 (443)
.+ + +.+.++ +++++|.||+|+|++|++..+ +...++..+++|++.+| ++++|+.|+|||+|||+.. ..
T Consensus 249 ~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~ 327 (476)
T 3lad_A 249 VKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVD-DYCATSVPGVYAIGDVVRGAMLAH 327 (476)
T ss_dssp ECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCC-TTSBCSSTTEEECGGGSSSCCCHH
T ss_pred EcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeC-CCcccCCCCEEEEEccCCCcccHH
Confidence 32 2 555554 578999999999999998554 45558888788999999 7788999999999999854 23
Q ss_pred cchHHHHHHHHHHHHh
Q 013435 397 GASIDARRISEDIEHQ 412 (443)
Q Consensus 397 ~a~~~a~~~a~~i~~~ 412 (443)
.|..+|+.+|++|.+.
T Consensus 328 ~A~~~g~~aa~~i~g~ 343 (476)
T 3lad_A 328 KASEEGVVVAERIAGH 343 (476)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 6788999999999864
No 65
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=99.97 E-value=3.5e-32 Score=271.34 Aligned_cols=291 Identities=15% Similarity=0.235 Sum_probs=195.2
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
.++||+|||||++|+++|..|++. |.+|+|||+++.++..... .+. . +.. .. ....++
T Consensus 35 ~~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~--~~~---~-------~~~-~~-------~~~~~l 94 (480)
T 3cgb_A 35 GSMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCG--LPY---V-------ISG-AI-------ASTEKL 94 (480)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGG--HHH---H-------HTT-SS-------SCGGGG
T ss_pred ccceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCC--cch---h-------hcC-Cc-------CCHHHh
Confidence 357999999999999999999997 8999999998765421110 000 0 000 00 001111
Q ss_pred HH-HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEe
Q 013435 111 LT-YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIF 189 (443)
Q Consensus 111 ~~-~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~ 189 (443)
.. +...+.++.+++++.++.|+.++... ..+.+... ..++..++.||+||+||| +.|..|++||.+. . .++
T Consensus 95 ~~~~~~~~~~~~gv~~~~~~~v~~i~~~~--~~v~v~~~--~~g~~~~~~~d~lviAtG--~~p~~p~i~G~~~-~-~v~ 166 (480)
T 3cgb_A 95 IARNVKTFRDKYGIDAKVRHEVTKVDTEK--KIVYAEHT--KTKDVFEFSYDRLLIATG--VRPVMPEWEGRDL-Q-GVH 166 (480)
T ss_dssp BSSCHHHHHHTTCCEEESSEEEEEEETTT--TEEEEEET--TTCCEEEEECSEEEECCC--EEECCCCCBTTTS-B-TEE
T ss_pred hhcCHHHHHhhcCCEEEeCCEEEEEECCC--CEEEEEEc--CCCceEEEEcCEEEECCC--CcccCCCCCCccC-C-CEE
Confidence 11 12233355688888899999998765 56555431 112224799999999999 6788888888753 1 223
Q ss_pred ecCCCCCCC-------CCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhH
Q 013435 190 HSSSYKTGE-------LFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVR 262 (443)
Q Consensus 190 ~~~~~~~~~-------~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~ 262 (443)
+.....+.. ...+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ .++|.. ...
T Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~-----------------~~~ 228 (480)
T 3cgb_A 167 LLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERND-HIGTIY-----------------DGD 228 (480)
T ss_dssp CCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGG-GTTSSS-----------------CHH
T ss_pred EeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC-chhhcC-----------------CHH
Confidence 322211111 1167999999999999999999999999999999887 333321 111
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc-E--EEcCCc
Q 013435 263 LVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA-A--EFIDGS 337 (443)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~-v--~~~~g~ 337 (443)
..+. +.+.+++.+++++.+ ++++..++ + ...++.
T Consensus 229 ~~~~-----------------------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~ 267 (480)
T 3cgb_A 229 MAEY-----------------------------------------IYKEADKHHIEILTNENVKAFKGNERVEAVETDKG 267 (480)
T ss_dssp HHHH-----------------------------------------HHHHHHHTTCEEECSCCEEEEEESSBEEEEEETTE
T ss_pred HHHH-----------------------------------------HHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCC
Confidence 1111 122333446666655 55554432 2 223456
Q ss_pred EEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------------cccchHHHHH
Q 013435 338 IENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------------LLGASIDARR 404 (443)
Q Consensus 338 ~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------------~~~a~~~a~~ 404 (443)
++++|.||+|+|+.|++ .++...++..+++|+|.+| ++++++.|+|||+|||+.. ...|..||+.
T Consensus 268 ~i~~D~vi~a~G~~p~~-~~l~~~g~~~~~~G~I~Vd-~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~ 345 (480)
T 3cgb_A 268 TYKADLVLVSVGVKPNT-DFLEGTNIRTNHKGAIEVN-AYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRL 345 (480)
T ss_dssp EEECSEEEECSCEEESC-GGGTTSCCCBCTTSCBCCC-TTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHH
T ss_pred EEEcCEEEECcCCCcCh-HHHHhCCcccCCCCCEEEC-CCccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHH
Confidence 89999999999999998 5777777877778999999 7788999999999999832 2257889999
Q ss_pred HHHHHHHh
Q 013435 405 ISEDIEHQ 412 (443)
Q Consensus 405 ~a~~i~~~ 412 (443)
+|++|.+.
T Consensus 346 aa~~i~g~ 353 (480)
T 3cgb_A 346 AGLNMLDK 353 (480)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 99999863
No 66
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=99.97 E-value=6.8e-33 Score=277.05 Aligned_cols=304 Identities=14% Similarity=0.142 Sum_probs=191.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecCC----ccccCCCCCCCCCCCCCCCHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLPK----QFCQLPLMPFPSNFPTYPTKQ 108 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 108 (443)
.|||+|||||++|+++|..|++.|.+|+|||++. +||+|.+ .+.|...+.... ....++.+.++.. ....+..
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 85 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVD-RISVNGK 85 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECS-EEEECHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCC-CCccCHH
Confidence 4899999999999999999999999999999975 7886643 222221110000 0000111110000 0112455
Q ss_pred HHHHHHHHHHHHcCCccc------cceeEEE--EEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCC
Q 013435 109 QFLTYLETYTNHFGLDPV------FNTTVVN--AEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEG 180 (443)
Q Consensus 109 ~~~~~l~~~~~~~~~~v~------~~~~V~~--i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g 180 (443)
++.+++.++..++...+. ....+.. .... +.+.|.+.++ ..+.||+||+||| ++|..|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~---~~~~v~~~~~-----~~~~~d~lViATG--s~p~~p~~~~ 155 (492)
T 3ic9_A 86 AVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFL---DEHTLQVDDH-----SQVIAKRIVIATG--SRPNYPEFLA 155 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEE---ETTEEEETTT-----EEEEEEEEEECCC--EECCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEe---cCCEEEEcCC-----cEEEeCEEEEccC--CCCcCCCCCC
Confidence 555555444333211110 0000100 0001 1123555443 7899999999999 7888887655
Q ss_pred CCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhch
Q 013435 181 MDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFP 260 (443)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~ 260 (443)
... .. ++++.........+++++|||+|.+|+|+|..|++.|.+||++.|++ .++|..+.
T Consensus 156 ~~~--~~-v~t~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~---------------- 215 (492)
T 3ic9_A 156 AAG--SR-LLTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSG-SVANLQDE---------------- 215 (492)
T ss_dssp TTG--GG-EECHHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTT-CCTTCCCH----------------
T ss_pred ccC--Cc-EEcHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC-cccccCCH----------------
Confidence 321 22 33332222233458999999999999999999999999999999988 34443211
Q ss_pred hHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--Cc--EEEc
Q 013435 261 VRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--HA--AEFI 334 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~~--v~~~ 334 (443)
...+. +.+.+++. |+++.+ ++++.. ++ +.+.
T Consensus 216 -~~~~~-----------------------------------------l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~ 252 (492)
T 3ic9_A 216 -EMKRY-----------------------------------------AEKTFNEE-FYFDAKARVISTIEKEDAVEVIYF 252 (492)
T ss_dssp -HHHHH-----------------------------------------HHHHHHTT-SEEETTCEEEEEEECSSSEEEEEE
T ss_pred -HHHHH-----------------------------------------HHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEE
Confidence 11111 12223334 666655 555543 22 3443
Q ss_pred --CC--cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCcc---cchHHHHHHH
Q 013435 335 --DG--SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGLL---GASIDARRIS 406 (443)
Q Consensus 335 --~g--~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~~---~a~~~a~~~a 406 (443)
+| +++++|.||+|+|++|++..+ +...++..+++|++.+|+++++++.|+|||+|||+.... .|..||+.+|
T Consensus 253 ~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa 332 (492)
T 3ic9_A 253 DKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAG 332 (492)
T ss_dssp CTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSCSHHHHHHHHHHHH
T ss_pred eCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCccHHHHHHHHHHHH
Confidence 67 579999999999999998433 455588888899999996678899999999999986532 6788999999
Q ss_pred HHHHHh
Q 013435 407 EDIEHQ 412 (443)
Q Consensus 407 ~~i~~~ 412 (443)
.+|.+.
T Consensus 333 ~~i~~~ 338 (492)
T 3ic9_A 333 TNAGAY 338 (492)
T ss_dssp HHHHHT
T ss_pred HHHcCC
Confidence 999864
No 67
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=99.97 E-value=4.1e-32 Score=271.26 Aligned_cols=304 Identities=17% Similarity=0.162 Sum_probs=192.6
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecC---C------CCCcccccC-CCCceeeecCCc----cccCCCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERA---N------CIASLWQLK-TYDRLRLHLPKQ----FCQLPLMPF 97 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~---~------~~gg~w~~~-~~~~~~~~~~~~----~~~~~~~~~ 97 (443)
...|||+|||||++|+++|..|++.|.+|+|||+. + .+||+|.+. +.|...+..... ......+.+
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~ 86 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGW 86 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence 46789999999999999999999999999999942 1 378887642 222111100000 000000000
Q ss_pred CCCCCCCCCHHHHHHHHHHH-----------HHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEc
Q 013435 98 PSNFPTYPTKQQFLTYLETY-----------TNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVA 166 (443)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiA 166 (443)
............+..+...+ ....++++..+. +..++ . ..+.|.+.++ + ..+.||+||+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~~--~--~~v~v~~~~g---~-~~~~~d~lviA 157 (483)
T 3dgh_A 87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGL-GSFVD--S--HTLLAKLKSG---E-RTITAQTFVIA 157 (483)
T ss_dssp CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEE--T--TEEEEECTTC---C-EEEEEEEEEEC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEcc--C--CEEEEEeCCC---e-EEEEcCEEEEe
Confidence 00001122444444443332 334455554433 22222 2 4555554432 2 57999999999
Q ss_pred cCCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCC
Q 013435 167 TGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGR 246 (443)
Q Consensus 167 tG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~ 246 (443)
|| +.|..|.+||...+ .++..+.. .....+++++|||+|.+|+|+|..|++.|.+||++.|.. ++|..+
T Consensus 158 TG--s~p~~p~i~G~~~~---~~~~~~~~-~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~--~l~~~d--- 226 (483)
T 3dgh_A 158 VG--GRPRYPDIPGAVEY---GITSDDLF-SLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI--VLRGFD--- 226 (483)
T ss_dssp CC--EEECCCSSTTHHHH---CBCHHHHT-TCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC--SSTTSC---
T ss_pred CC--CCcCCCCCCCcccc---cCcHHHHh-hhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC--CCcccC---
Confidence 99 78888888886431 12222111 223357899999999999999999999999999998843 333221
Q ss_pred CccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--Cc
Q 013435 247 STFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IK 324 (443)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~ 324 (443)
....+ .+.+.+.+.+|+++.+ +.
T Consensus 227 --------------~~~~~-----------------------------------------~l~~~l~~~Gv~i~~~~~v~ 251 (483)
T 3dgh_A 227 --------------QQMAE-----------------------------------------LVAASMEERGIPFLRKTVPL 251 (483)
T ss_dssp --------------HHHHH-----------------------------------------HHHHHHHHTTCCEEETEEEE
T ss_pred --------------HHHHH-----------------------------------------HHHHHHHhCCCEEEeCCEEE
Confidence 11111 1123333456666655 55
Q ss_pred EEeC--Cc---EEEcCCc-----EEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC
Q 013435 325 RLTH--HA---AEFIDGS-----IENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR 393 (443)
Q Consensus 325 ~~~~--~~---v~~~~g~-----~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~ 393 (443)
++.. ++ +.+.++. ++++|.||+|+|++|++..+ +...++..++ |++.+| ++++|+.|+|||+|||+.
T Consensus 252 ~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd-~~~~t~~~~IyA~GD~~~ 329 (483)
T 3dgh_A 252 SVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVD-SQEATNVANIYAVGDIIY 329 (483)
T ss_dssp EEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCC-TTCBCSSTTEEECSTTBT
T ss_pred EEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEEC-cCCccCCCCEEEEEcccC
Confidence 5543 22 5555543 78999999999999998433 2455887767 999999 778899999999999973
Q ss_pred C----cccchHHHHHHHHHHHHh
Q 013435 394 G----LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 394 ~----~~~a~~~a~~~a~~i~~~ 412 (443)
+ ...|..||+.+|++|.+.
T Consensus 330 ~~~~~~~~A~~~g~~aa~~i~g~ 352 (483)
T 3dgh_A 330 GKPELTPVAVLAGRLLARRLYGG 352 (483)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCccHHHHHHHHHHHHHHHcCC
Confidence 2 226788999999999865
No 68
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=99.97 E-value=3.4e-31 Score=263.06 Aligned_cols=296 Identities=18% Similarity=0.185 Sum_probs=194.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCCc----cccCCCCCCCCCCCCCCCHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPKQ----FCQLPLMPFPSNFPTYPTKQ 108 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 108 (443)
.+||+|||||++|+++|..|++.|.+|+|+|+++ +||+|.+. +.|...+..... ......+..+.. ......
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 82 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAK--PELDLK 82 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECC--CEECHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCC--CCcCHH
Confidence 4799999999999999999999999999999987 88887542 111110000000 000000000000 001222
Q ss_pred HH-------HHH----HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCC
Q 013435 109 QF-------LTY----LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPY 177 (443)
Q Consensus 109 ~~-------~~~----l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~ 177 (443)
.+ .++ +..++++.+++++.++.+. ++ . .. |.+. + .+++||+||+||| ++|..|+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~--~--~~--v~v~-g-----~~~~~d~lViATG--s~p~~p~ 147 (464)
T 2eq6_A 83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARL-VG--P--KE--VEVG-G-----ERYGAKSLILATG--SEPLELK 147 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEE-EE--T--TE--EEET-T-----EEEEEEEEEECCC--EEECCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEE-cc--C--CE--EEEc-c-----EEEEeCEEEEcCC--CCCCCCC
Confidence 22 222 3445566788887776442 32 2 33 4443 3 6799999999999 6777775
Q ss_pred -CCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhh
Q 013435 178 -IEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLL 256 (443)
Q Consensus 178 -~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~ 256 (443)
+++.. .++++.+........+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|....
T Consensus 148 gi~~~~----~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~------------ 210 (464)
T 2eq6_A 148 GFPFGE----DVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMP-EILPQGDP------------ 210 (464)
T ss_dssp TBCCSS----SEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCH------------
T ss_pred CCCCCC----cEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCC-ccccccCH------------
Confidence 66521 2343333222222256899999999999999999999999999999987 34443210
Q ss_pred hhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC--c--
Q 013435 257 KWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH--A-- 330 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~--~-- 330 (443)
...+ .+.+.+++.+|+++.+ ++++..+ +
T Consensus 211 -----~~~~-----------------------------------------~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~ 244 (464)
T 2eq6_A 211 -----ETAA-----------------------------------------LLRRALEKEGIRVRTKTKAVGYEKKKDGLH 244 (464)
T ss_dssp -----HHHH-----------------------------------------HHHHHHHHTTCEEECSEEEEEEEEETTEEE
T ss_pred -----HHHH-----------------------------------------HHHHHHHhcCCEEEcCCEEEEEEEeCCEEE
Confidence 1111 1123334456777766 5666532 2
Q ss_pred EEEc-C--Cc--EEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHH
Q 013435 331 AEFI-D--GS--IENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASID 401 (443)
Q Consensus 331 v~~~-~--g~--~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~ 401 (443)
+.+. + |+ ++++|.||+|+|++|++..+ +...++..+++|++.+| ++++|+.|+|||+|||+.. ...|..|
T Consensus 245 v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~Iya~GD~~~~~~l~~~A~~~ 323 (464)
T 2eq6_A 245 VRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVN-ARMETSVPGVYAIGDAARPPLLAHKAMRE 323 (464)
T ss_dssp EEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCC-TTCBCSSTTEEECGGGTCSSCCHHHHHHH
T ss_pred EEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEEC-CCcccCCCCEEEEeccCCCcccHHHHHHH
Confidence 4554 6 76 89999999999999998433 34447777778999999 7788999999999999864 2257889
Q ss_pred HHHHHHHHHH
Q 013435 402 ARRISEDIEH 411 (443)
Q Consensus 402 a~~~a~~i~~ 411 (443)
|+.+|++|.+
T Consensus 324 g~~aa~~i~g 333 (464)
T 2eq6_A 324 GLIAAENAAG 333 (464)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 9999999986
No 69
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=99.97 E-value=2.5e-31 Score=264.57 Aligned_cols=303 Identities=17% Similarity=0.187 Sum_probs=196.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecC-Cc---cccCCCC-CCCCCCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLP-KQ---FCQLPLM-PFPSNFPTYPT 106 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~-~~---~~~~~~~-~~~~~~~~~~~ 106 (443)
..+||+|||||++|+++|..|++.|.+|+|||++ .+||.|.+. +.+...+... .. ....+.. ..+.. .....
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 80 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT-VPTID 80 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCC-CCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCC-CCccC
Confidence 3589999999999999999999999999999998 689887642 1111100000 00 0011111 00000 01112
Q ss_pred HHHHH-------HHHH-----HHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 107 KQQFL-------TYLE-----TYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 107 ~~~~~-------~~l~-----~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
...+. +++. +..++. +++++.+. +..++ . ..+.|.+.++ +...++||++|+||| +.|
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~~--~--~~~~v~~~~g---~~~~~~~d~lviAtG--s~p 150 (467)
T 1zk7_A 81 RSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFKD--D--QSLTVRLNEG---GERVVMFDRCLVATG--ASP 150 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEEE--T--TEEEEEETTS---SEEEEECSEEEECCC--EEE
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEcc--C--CEEEEEeCCC---ceEEEEeCEEEEeCC--CCC
Confidence 23322 2222 223334 56655543 54443 2 5566665432 336799999999999 788
Q ss_pred ccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhh
Q 013435 174 VVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSM 253 (443)
Q Consensus 174 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~ 253 (443)
..|++||.+... .++..+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.|++ .++| ..
T Consensus 151 ~~p~i~G~~~~~--~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~-~~---------- 215 (467)
T 1zk7_A 151 AVPPIPGLKESP--YWTSTEALA-SDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNT-LFFR-ED---------- 215 (467)
T ss_dssp CCCCCTTTTTSC--CBCHHHHHH-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC-TTTT-SC----------
T ss_pred CCCCCCCCCcCc--eecHHHHhc-ccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECC-ccCC-CC----------
Confidence 889999875421 122211111 12347899999999999999999999999999999988 4444 21
Q ss_pred hhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc-
Q 013435 254 CLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA- 330 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~- 330 (443)
....+ .+.+.+++.+++++.+ +.++..++
T Consensus 216 -------~~~~~-----------------------------------------~l~~~l~~~Gv~i~~~~~v~~i~~~~~ 247 (467)
T 1zk7_A 216 -------PAIGE-----------------------------------------AVTAAFRAEGIEVLEHTQASQVAHMDG 247 (467)
T ss_dssp -------HHHHH-----------------------------------------HHHHHHHHTTCEEETTCCEEEEEEETT
T ss_pred -------HHHHH-----------------------------------------HHHHHHHhCCCEEEcCCEEEEEEEeCC
Confidence 01111 1123334456777665 55554321
Q ss_pred ---EEEcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHH
Q 013435 331 ---AEFIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDAR 403 (443)
Q Consensus 331 ---v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~ 403 (443)
+.+. +.++++|.||+|+|+.|++..+ +...++..+++|++.+| ++.+++.|+|||+|||+.. ...|..||+
T Consensus 248 ~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~ 325 (467)
T 1zk7_A 248 EFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVID-QGMRTSNPNIYAAGDCTDQPQFVYVAAAAGT 325 (467)
T ss_dssp EEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCC-TTCBCSSTTEEECSTTBSSCCCHHHHHHHHH
T ss_pred EEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEEC-CCcccCCCCEEEEeccCCCcccHHHHHHHHH
Confidence 3444 5689999999999999998443 34557777778999999 7788999999999999864 336788999
Q ss_pred HHHHHHHHh
Q 013435 404 RISEDIEHQ 412 (443)
Q Consensus 404 ~~a~~i~~~ 412 (443)
.+|.+|.+.
T Consensus 326 ~aa~~i~~~ 334 (467)
T 1zk7_A 326 RAAINMTGG 334 (467)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999999864
No 70
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=99.97 E-value=1.5e-31 Score=261.24 Aligned_cols=280 Identities=17% Similarity=0.194 Sum_probs=194.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCC--CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGV--PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
+.+||+|||||++|+++|..|++.|. +|+|+|+++.++. ....+ +..+..-.. ++..
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~-------~~~~~--~~~~~~~~~---~~~~--------- 64 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY-------DRPPL--SKDFMAHGD---AEKI--------- 64 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB-------CSGGG--GTHHHHHCC---GGGS---------
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcc-------cCCCC--CHHHhCCCc---hhhh---------
Confidence 56899999999999999999999987 5999999875431 10000 000000000 0000
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCC-CCCCCCcccEe
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYI-EGMDGFRGPIF 189 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~-~g~~~~~~~~~ 189 (443)
++. ++.+.+++++.+++|+.++... . .|++.++ .++.||+||+||| +.|..|++ ||.+ .+ ++
T Consensus 65 --~~~-~~~~~~v~~~~~~~v~~i~~~~--~--~v~~~~g-----~~~~~d~lviAtG--~~~~~~~i~~G~~--~~-v~ 127 (408)
T 2gqw_A 65 --RLD-CKRAPEVEWLLGVTAQSFDPQA--H--TVALSDG-----RTLPYGTLVLATG--AAPRALPTLQGAT--MP-VH 127 (408)
T ss_dssp --BCC-CTTSCSCEEEETCCEEEEETTT--T--EEEETTS-----CEEECSEEEECCC--EEECCCGGGTTCS--SC-EE
T ss_pred --hHH-HHHHCCCEEEcCCEEEEEECCC--C--EEEECCC-----CEEECCEEEECCC--CCCCCCCccCCCC--Cc-EE
Confidence 000 2344578888898899887643 3 3666554 5799999999999 67888888 8865 12 22
Q ss_pred ecCCCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHH
Q 013435 190 HSSSYKT-----GELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLV 264 (443)
Q Consensus 190 ~~~~~~~-----~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 264 (443)
+.....+ .....+++++|||+|.+|+|+|..|.+.|.+||++.+.+ .++|.. ++....
T Consensus 128 ~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~----------------~~~~~~ 190 (408)
T 2gqw_A 128 TLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP-RLMSRA----------------APATLA 190 (408)
T ss_dssp ECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTT----------------SCHHHH
T ss_pred EECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC-cccccc----------------cCHHHH
Confidence 2211111 112347999999999999999999999999999999988 343421 111111
Q ss_pred HHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCcEEEcCCcEEccc
Q 013435 265 DQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHAAEFIDGSIENYD 342 (443)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~v~~~~g~~~~~D 342 (443)
+ .+.+.+++.+|+++.+ +.++..+.+.+.+|+++++|
T Consensus 191 ~-----------------------------------------~l~~~l~~~GV~i~~~~~v~~i~~~~v~~~~g~~i~~D 229 (408)
T 2gqw_A 191 D-----------------------------------------FVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAAD 229 (408)
T ss_dssp H-----------------------------------------HHHHHHHHTTCEEEESCCEEEEETTEEEETTSCEEECS
T ss_pred H-----------------------------------------HHHHHHHHcCcEEEeCCEEEEEECCEEEECCCCEEEcC
Confidence 1 1123344557777766 67776446888899999999
Q ss_pred EEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc-------------ccchHHHHHHHHHH
Q 013435 343 AIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL-------------LGASIDARRISEDI 409 (443)
Q Consensus 343 ~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~-------------~~a~~~a~~~a~~i 409 (443)
.||+|+|++|++ .++...++..+ +| |.+| ++.+++.|+|||+|||+... ..|..||+.+|.+|
T Consensus 230 ~vi~a~G~~p~~-~l~~~~gl~~~-~g-i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 305 (408)
T 2gqw_A 230 MVVVGIGVLAND-ALARAAGLACD-DG-IFVD-AYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHL 305 (408)
T ss_dssp EEEECSCEEECC-HHHHHHTCCBS-SS-EECC-TTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHH
T ss_pred EEEECcCCCccH-HHHHhCCCCCC-CC-EEEC-CCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHh
Confidence 999999999998 56666677664 56 8899 67889999999999997531 25788999999999
Q ss_pred HHh
Q 013435 410 EHQ 412 (443)
Q Consensus 410 ~~~ 412 (443)
.+.
T Consensus 306 ~g~ 308 (408)
T 2gqw_A 306 VDP 308 (408)
T ss_dssp HCT
T ss_pred cCC
Confidence 864
No 71
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=99.97 E-value=2.5e-31 Score=266.06 Aligned_cols=335 Identities=15% Similarity=0.094 Sum_probs=205.6
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC--------CCCccccc-CCCCceeeecCCcccc-----CCCC
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN--------CIASLWQL-KTYDRLRLHLPKQFCQ-----LPLM 95 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~--------~~gg~w~~-~~~~~~~~~~~~~~~~-----~~~~ 95 (443)
.+...||++|||+||+|+.+|.++++.|.+|+|||+.. .+||++-+ .+.|+..+........ ...+
T Consensus 38 ~~~ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~ 117 (542)
T 4b1b_A 38 EHTYDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAY 117 (542)
T ss_dssp -CCSSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhc
Confidence 44557999999999999999999999999999999743 47876543 2233211110000000 0000
Q ss_pred CCCCCCCCCCCHHHHHHHH-----------HHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEE
Q 013435 96 PFPSNFPTYPTKQQFLTYL-----------ETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLI 164 (443)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vI 164 (443)
.+... ........+.++. ....++.++++..+. ..-++ . ..+.|..... .++.+.++++++|
T Consensus 118 Gi~~~-~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~-a~f~~--~--~~v~V~~~~~-~~~~~~i~a~~ii 190 (542)
T 4b1b_A 118 GWKFD-NLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGL-AKLKD--K--NTVSYYLKGD-LSKEETVTGKYIL 190 (542)
T ss_dssp TEEEE-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEE-EEEEE--T--TEEEEEEC---CCCEEEEEEEEEE
T ss_pred CcccC-cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeee-EEEcC--C--CcceEeeccc-CCceEEEeeeeEE
Confidence 00000 0001223333322 223344566554332 11111 1 4444443321 1233789999999
Q ss_pred EccCCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCcccccccc
Q 013435 165 VATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMI 244 (443)
Q Consensus 165 iAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~ 244 (443)
|||| ++|..|+.++... ..+.+++........+++++|||||.+|+|+|..+++.|.+||++.|+. +||..+.
T Consensus 191 IATG--s~P~~P~~~~~~~---~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~--~L~~~D~ 263 (542)
T 4b1b_A 191 IATG--CRPHIPDDVEGAK---ELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSI--VLRGFDQ 263 (542)
T ss_dssp ECCC--EEECCCSSSBTHH---HHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSC--SSTTSCH
T ss_pred eccC--CCCCCCCcccCCC---ccccCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecccc--cccccch
Confidence 9999 7888875433221 1122322222333457899999999999999999999999999998754 4555432
Q ss_pred CCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--
Q 013435 245 GRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA-- 322 (443)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-- 322 (443)
+ +.. ...+.+++.++.++.+
T Consensus 264 -----e------------i~~-----------------------------------------~l~~~l~~~gi~~~~~~~ 285 (542)
T 4b1b_A 264 -----Q------------CAV-----------------------------------------KVKLYMEEQGVMFKNGIL 285 (542)
T ss_dssp -----H------------HHH-----------------------------------------HHHHHHHHTTCEEEETCC
T ss_pred -----h------------HHH-----------------------------------------HHHHHHHhhcceeecceE
Confidence 1 111 1123334456666655
Q ss_pred CcEEeC--Cc--EEEcCCcEEcccEEEEccCCCCCCCCCccCc-CcCccCCCCc-CCCCCCCCcCCCceEEEeeccCCc-
Q 013435 323 IKRLTH--HA--AEFIDGSIENYDAIILATGYKSNVPYWLKDT-EMFSEKDGFP-RMEFPNGWKGAHGLYAVGFNKRGL- 395 (443)
Q Consensus 323 v~~~~~--~~--v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~-~l~~~~~G~i-~~~~~~~~~~~~~ifaiGd~~~~~- 395 (443)
+.++.. +. +.+.++.++.+|.|++|+|++||++.+-.+. ++..+..|.+ .+| ++++|++|+|||+||++...
T Consensus 286 v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd-~~~~Ts~p~IyAiGDv~~~~p 364 (542)
T 4b1b_A 286 PKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIAD-HLSCTNIPSIFAVGDVAENVP 364 (542)
T ss_dssp EEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCC-TTSBCSSTTEEECTTSBTTCC
T ss_pred EEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEecc-ccccccCCCeEEeccccCCch
Confidence 344432 22 5567888899999999999999996554443 7766666655 666 89999999999999998542
Q ss_pred -c--cchHHHHHHHHHHHHhhHHHHHhHhhhhccccCCCCCcccc
Q 013435 396 -L--GASIDARRISEDIEHQWNSEAKKLMAFSRSLPLPPNQDLEF 437 (443)
Q Consensus 396 -~--~a~~~a~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
. .|..+|+.+++++.+.-.........+...+..|+...+.+
T Consensus 365 ~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~VGl 409 (542)
T 4b1b_A 365 ELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGY 409 (542)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEEEeC
Confidence 2 56789999999998765443445555666677777766654
No 72
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=99.97 E-value=3.8e-31 Score=262.35 Aligned_cols=300 Identities=16% Similarity=0.179 Sum_probs=196.2
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCC----ccccCCCCCCCCCCCCCCCHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPK----QFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
|||+|||||++|+++|..|++.|.+|+|+|+++.+||.|.+. +.+...+.... .... ..+..+.. ........
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~ 79 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK-GLLGAKVK-GVELDLPA 79 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH-CCTTEEEC-CEEECHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhh-hcCCcccC-CCccCHHH
Confidence 689999999999999999999999999999998899987642 11211000000 0000 00000000 00012222
Q ss_pred H-----------HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCC
Q 013435 110 F-----------LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYI 178 (443)
Q Consensus 110 ~-----------~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~ 178 (443)
+ ...+..++++.+++++.++.+ .+ +. ..+.|.+ ++ .++.||+||+||| +.|..|++
T Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i--~~--~~~~v~~-~g-----~~~~~d~lviAtG--~~p~~~~~ 146 (455)
T 2yqu_A 80 LMAHKDKVVQANTQGVEFLFKKNGIARHQGTAR-FL--SE--RKVLVEE-TG-----EELEARYILIATG--SAPLIPPW 146 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-ES--SS--SEEEETT-TC-----CEEEEEEEEECCC--EEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Ee--cC--CeEEEee-CC-----EEEEecEEEECCC--CCCCCCCC
Confidence 2 222345556678887777643 22 12 4554543 32 5799999999999 67888877
Q ss_pred CCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhh
Q 013435 179 EGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKW 258 (443)
Q Consensus 179 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~ 258 (443)
+|.+.. .+++..+.... ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++|...
T Consensus 147 ~g~~~~--~v~~~~~~~~~-~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~-~~l~~~~--------------- 207 (455)
T 2yqu_A 147 AQVDYE--RVVTSTEALSF-PEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMD-RILPTMD--------------- 207 (455)
T ss_dssp BCCCSS--SEECHHHHTCC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSC---------------
T ss_pred CCCCcC--cEechHHhhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCC-ccccccC---------------
Confidence 775431 23333322222 2246899999999999999999999999999999987 3444321
Q ss_pred chhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--Cc--EE
Q 013435 259 FPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--HA--AE 332 (443)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~~--v~ 332 (443)
..+.+.+ .+.+++.+++++.+ ++++.. ++ +.
T Consensus 208 --~~~~~~l-----------------------------------------~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~ 244 (455)
T 2yqu_A 208 --LEVSRAA-----------------------------------------ERVFKKQGLTIRTGVRVTAVVPEAKGARVE 244 (455)
T ss_dssp --HHHHHHH-----------------------------------------HHHHHHHTCEEECSCCEEEEEEETTEEEEE
T ss_pred --HHHHHHH-----------------------------------------HHHHHHCCCEEEECCEEEEEEEeCCEEEEE
Confidence 0111111 12223345666655 555543 22 44
Q ss_pred EcCCcEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCcc---cchHHHHHHHHH
Q 013435 333 FIDGSIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGLL---GASIDARRISED 408 (443)
Q Consensus 333 ~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~~---~a~~~a~~~a~~ 408 (443)
+.+|+++++|.||+|+|..|++..+ +...++..+++|++.+| ++.+++.|+||++|||+.... .|..||+.+|.+
T Consensus 245 ~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~ 323 (455)
T 2yqu_A 245 LEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVD-EHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEH 323 (455)
T ss_dssp ETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCC-TTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHH
T ss_pred ECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeEC-CCcccCCCCEEEEecCCCCccCHHHHHHhHHHHHHH
Confidence 5578899999999999999998433 34457776677999999 678889999999999986532 578899999999
Q ss_pred HHHh
Q 013435 409 IEHQ 412 (443)
Q Consensus 409 i~~~ 412 (443)
|.+.
T Consensus 324 i~~~ 327 (455)
T 2yqu_A 324 MVRG 327 (455)
T ss_dssp HHHS
T ss_pred HcCC
Confidence 9863
No 73
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=99.97 E-value=8.6e-32 Score=266.39 Aligned_cols=287 Identities=18% Similarity=0.185 Sum_probs=194.8
Q ss_pred CCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
+||+|||||++|+++|..|++. |.+|+|+|+++.++..... +... .... . ...+++..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~-----~~~~-------~~~~-~-------~~~~~~~~ 60 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAG-----MQLY-------LEGK-V-------KDVNSVRY 60 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGG-----HHHH-------HTTS-S-------CCGGGSBS
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCccccc-----chhh-------hcCc-c-------CCHHHhhc
Confidence 3799999999999999999998 8999999998865421000 0000 0000 0 00111111
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
+..+.+++.+++++.++.|..++... ..+.+.. ...++..+++||++|+||| +.|..|++||.+. . .+++..
T Consensus 61 ~~~~~~~~~gv~~~~~~~v~~i~~~~--~~v~~~~--~~~g~~~~~~~d~lviAtG--~~p~~p~i~G~~~-~-~v~~~~ 132 (447)
T 1nhp_A 61 MTGEKMESRGVNVFSNTEITAIQPKE--HQVTVKD--LVSGEERVENYDKLIISPG--AVPFELDIPGKDL-D-NIYLMR 132 (447)
T ss_dssp CCHHHHHHTTCEEEETEEEEEEETTT--TEEEEEE--TTTCCEEEEECSEEEECCC--EEECCCCSTTTTS-B-SEECCC
T ss_pred CCHHHHHHCCCEEEECCEEEEEeCCC--CEEEEEe--cCCCceEEEeCCEEEEcCC--CCcCCCCCCCCCC-C-CeEEEC
Confidence 22334456688888899999888665 5544433 1112334699999999999 6788888998753 1 233322
Q ss_pred CCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHH
Q 013435 193 SYKTG-------ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVD 265 (443)
Q Consensus 193 ~~~~~-------~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (443)
.+.+. ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+++.. +...+.+
T Consensus 133 ~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~----------------~~~~~~~ 195 (447)
T 1nhp_A 133 GRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD-RPLGVY----------------LDKEFTD 195 (447)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTTT----------------CCHHHHH
T ss_pred CHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCc-cccccc----------------CCHHHHH
Confidence 21111 01157899999999999999999999999999999987 333321 1111111
Q ss_pred HHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc----EEEcCCcEE
Q 013435 266 QFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA----AEFIDGSIE 339 (443)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~----v~~~~g~~~ 339 (443)
.+.+.+++.+++++.+ +.++..++ +.+ ++.++
T Consensus 196 -----------------------------------------~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i 233 (447)
T 1nhp_A 196 -----------------------------------------VLTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNAY 233 (447)
T ss_dssp -----------------------------------------HHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEE
T ss_pred -----------------------------------------HHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEE
Confidence 1123344567777765 66665542 334 66789
Q ss_pred cccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------------cccchHHHHHHH
Q 013435 340 NYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------------LLGASIDARRIS 406 (443)
Q Consensus 340 ~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------------~~~a~~~a~~~a 406 (443)
++|.||+|+|++|++ .++... +..+++|++.+| ++++|+.|+|||+|||+.. ...|..||+.+|
T Consensus 234 ~~d~vi~a~G~~p~~-~~~~~~-~~~~~~G~i~Vd-~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa 310 (447)
T 1nhp_A 234 DADLVVVAVGVRPNT-AWLKGT-LELHPNGLIKTD-EYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAV 310 (447)
T ss_dssp ECSEEEECSCEEESC-GGGTTT-SCBCTTSCBCCC-TTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHH
T ss_pred ECCEEEECcCCCCCh-HHHHhh-hhhcCCCcEEEC-ccccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHH
Confidence 999999999999998 566655 666678999999 7788999999999999852 225778999999
Q ss_pred HHHHH
Q 013435 407 EDIEH 411 (443)
Q Consensus 407 ~~i~~ 411 (443)
++|.+
T Consensus 311 ~~i~g 315 (447)
T 1nhp_A 311 KNLEE 315 (447)
T ss_dssp HTSSS
T ss_pred HhhcC
Confidence 99875
No 74
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=99.97 E-value=3.4e-31 Score=256.99 Aligned_cols=282 Identities=16% Similarity=0.208 Sum_probs=196.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
.+||+|||||++|+++|..|++.| .+|+++|++. |..|....+.. .+.......++.
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~~l~~-------------------~~~~~~~~~~~~ 62 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKPMLST-------------------GFSKNKDADGLA 62 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGGGGGG-------------------TTTTTCCHHHHE
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcccccH-------------------HHhCCCCHHHhh
Confidence 589999999999999999999998 5789999875 32222211100 001112334443
Q ss_pred H-HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 112 T-YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 112 ~-~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
. ++.+++++.+++++.+++|..++... .. |.+.+ ..+.||++|+||| +.|..|++||.+. ..+++
T Consensus 63 ~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~--v~~~~------~~~~~d~lviAtG--~~p~~p~i~g~~~--~~v~~ 128 (384)
T 2v3a_A 63 MAEPGAMAEQLNARILTHTRVTGIDPGH--QR--IWIGE------EEVRYRDLVLAWG--AEPIRVPVEGDAQ--DALYP 128 (384)
T ss_dssp EECHHHHHHHTTCEEECSCCCCEEEGGG--TE--EEETT------EEEECSEEEECCC--EEECCCCCBSTTT--TCEEE
T ss_pred ccCHHHHHHhCCcEEEeCCEEEEEECCC--CE--EEECC------cEEECCEEEEeCC--CCcCCCCCCCcCc--CCEEE
Confidence 2 45666677889988888888887654 33 55543 5799999999999 6888888888652 12333
Q ss_pred cCCCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHH
Q 013435 191 SSSYKTG-----ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVD 265 (443)
Q Consensus 191 ~~~~~~~-----~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (443)
.....+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .+++... +....+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~~~~~~----------------~~~~~~ 191 (384)
T 2v3a_A 129 INDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCE-QVMPGLL----------------HPAAAK 191 (384)
T ss_dssp CSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTTS----------------CHHHHH
T ss_pred ECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-chhhccc----------------CHHHHH
Confidence 3322111 11247899999999999999999999999999999987 3333210 111111
Q ss_pred HHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--C--cEEEcCCcEE
Q 013435 266 QFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--H--AAEFIDGSIE 339 (443)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~--~v~~~~g~~~ 339 (443)
. +.+.+++.+++++.+ +.++.. + .+.+.+|+++
T Consensus 192 ~-----------------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i 230 (384)
T 2v3a_A 192 A-----------------------------------------VQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVI 230 (384)
T ss_dssp H-----------------------------------------HHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEE
T ss_pred H-----------------------------------------HHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEE
Confidence 1 123334456666655 555543 2 3667889999
Q ss_pred cccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccC--C-----cccchHHHHHHHHHHHHh
Q 013435 340 NYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKR--G-----LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 340 ~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~--~-----~~~a~~~a~~~a~~i~~~ 412 (443)
++|.||+|+|+.|++ .++...++..+ +| +.+| ++++|+.|+|||+|||+. . ...|..||+.+|++|.+.
T Consensus 231 ~~d~vv~a~G~~p~~-~l~~~~g~~~~-~g-i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~ 306 (384)
T 2v3a_A 231 PCDLVVSAVGLRPRT-ELAFAAGLAVN-RG-IVVD-RSLRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGN 306 (384)
T ss_dssp EESEEEECSCEEECC-HHHHHTTCCBS-SS-EEEC-TTCBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred ECCEEEECcCCCcCH-HHHHHCCCCCC-CC-EEEC-CCCCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCC
Confidence 999999999999998 46666677764 67 9999 678899999999999973 2 123578999999999863
No 75
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=99.97 E-value=4.5e-32 Score=264.89 Aligned_cols=281 Identities=16% Similarity=0.180 Sum_probs=194.8
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCC--CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGV--PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
+||+|||||++|+++|..|++.|. +|+|+|+++.++ |....+. ..+. .....+ ..+..
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~-------y~~~~l~--~~~l--~~~~~~---------~~~~~ 61 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLP-------YQRPPLS--KAYL--KSGGDP---------NSLMF 61 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSS-------BCSGGGG--TGGG--GSCCCT---------TSSBS
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------CCCccCC--HHHH--CCCCCH---------HHccC
Confidence 589999999999999999999998 899999988543 1111000 0000 000000 00111
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
....+..+.+++++. ++|+.++... .. |.+.++ ..+.||+||+||| +.|..|.+||.+. .+ ++..
T Consensus 62 ~~~~~~~~~~i~~~~-~~v~~id~~~--~~--v~~~~g-----~~~~~d~lvlAtG--~~p~~~~i~g~~~-~~--v~~~ 126 (404)
T 3fg2_P 62 RPEKFFQDQAIELIS-DRMVSIDREG--RK--LLLASG-----TAIEYGHLVLATG--ARNRMLDVPNASL-PD--VLYL 126 (404)
T ss_dssp SCHHHHHHTTEEEEC-CCEEEEETTT--TE--EEESSS-----CEEECSEEEECCC--EEECCCCSTTTTS-TT--EECC
T ss_pred CCHHHHHhCCCEEEE-EEEEEEECCC--CE--EEECCC-----CEEECCEEEEeeC--CCccCCCCCCCCC-Cc--EEEE
Confidence 122344556888877 8899998655 43 666665 6899999999999 6788888888653 11 2221
Q ss_pred CCCC------CCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHH
Q 013435 193 SYKT------GELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQ 266 (443)
Q Consensus 193 ~~~~------~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (443)
...+ .....+++++|||+|.+|+|+|..+...|.+|+++.+.+. +++... +....+
T Consensus 127 ~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~-~~~~~~----------------~~~~~~- 188 (404)
T 3fg2_P 127 RTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPR-VMARVV----------------TPEISS- 188 (404)
T ss_dssp SSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-TTTTTS----------------CHHHHH-
T ss_pred CCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCc-chhhcc----------------CHHHHH-
Confidence 1111 1123578999999999999999999999999999998883 323211 111111
Q ss_pred HHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC-----cEEEcCCcEE
Q 013435 267 FLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH-----AAEFIDGSIE 339 (443)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~-----~v~~~~g~~~ 339 (443)
.+.+.+++.+|+++.+ ++++..+ ++.+.+|+++
T Consensus 189 ----------------------------------------~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i 228 (404)
T 3fg2_P 189 ----------------------------------------YFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTL 228 (404)
T ss_dssp ----------------------------------------HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEE
T ss_pred ----------------------------------------HHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEE
Confidence 1123344567777765 6666543 4788999999
Q ss_pred cccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC-------------cccchHHHHHHH
Q 013435 340 NYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-------------LLGASIDARRIS 406 (443)
Q Consensus 340 ~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-------------~~~a~~~a~~~a 406 (443)
++|.||+|+|+.|++ .++...++..+ +| +.+| ++.+++.|+|||+|||+.. +..|..||+.+|
T Consensus 229 ~aD~Vv~a~G~~p~~-~l~~~~gl~~~-~G-i~vd-~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa 304 (404)
T 3fg2_P 229 PCDLVVVGVGVIPNV-EIAAAAGLPTA-AG-IIVD-QQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVA 304 (404)
T ss_dssp ECSEEEECCCEEECC-HHHHHTTCCBS-SS-EEEC-TTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHH
T ss_pred EcCEEEECcCCccCH-HHHHhCCCCCC-CC-EEEC-CCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHH
Confidence 999999999999998 67777787664 56 8888 6788999999999999753 125778999999
Q ss_pred HHHHHh
Q 013435 407 EDIEHQ 412 (443)
Q Consensus 407 ~~i~~~ 412 (443)
++|.+.
T Consensus 305 ~~i~g~ 310 (404)
T 3fg2_P 305 ARLTGD 310 (404)
T ss_dssp HHTTTC
T ss_pred HHhCCC
Confidence 999865
No 76
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.97 E-value=4.6e-30 Score=254.50 Aligned_cols=296 Identities=17% Similarity=0.217 Sum_probs=192.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc-CCCCceeeecC----CccccCCC---CCCCCCCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL-KTYDRLRLHLP----KQFCQLPL---MPFPSNFPTY 104 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~ 104 (443)
..|||+|||||++|+++|..|++.|.+|+|+|+ +.+||.|.+ .+.|...+... .....+.. ...+.. ...
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 81 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVA-SPR 81 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCC-CCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccC-CCc
Confidence 458999999999999999999999999999999 678988764 22221110000 00000110 111000 011
Q ss_pred CCHHHHHHH-----------HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 105 PTKQQFLTY-----------LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 105 ~~~~~~~~~-----------l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
.+...+..+ +.++.++.+++++.++.+. ++ . .. |.+.+ ..+.||+||+||| +.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~--~--~~--v~v~~------~~~~~d~lviATG--s~p 146 (458)
T 1lvl_A 82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD--G--KQ--VEVDG------QRIQCEHLLLATG--SSS 146 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE--T--TE--EEETT------EEEECSEEEECCC--EEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc--C--CE--EEEee------EEEEeCEEEEeCC--CCC
Confidence 233333332 3355667788887776543 32 2 33 55443 6799999999999 566
Q ss_pred ccCC-CCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchh
Q 013435 174 VVPY-IEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLS 252 (443)
Q Consensus 174 ~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~ 252 (443)
..|+ ++. + +.++++.+.... ...+++++|||+|.+|+|+|..|++.|.+||++.+.+ .++|...
T Consensus 147 ~~~~~~~~-~---~~v~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~--------- 211 (458)
T 1lvl_A 147 VELPMLPL-G---GPVISSTEALAP-KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE-RILPTYD--------- 211 (458)
T ss_dssp CCBTTBCC-B---TTEECHHHHTCC-SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSC---------
T ss_pred CCCCCCCc-c---CcEecHHHHhhh-hccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCC-ccccccC---------
Confidence 6554 442 2 133443333222 2257899999999999999999999999999999988 3444221
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCc
Q 013435 253 MCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHA 330 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~ 330 (443)
....+. +.+.+.+.+|+++.+ ++++..++
T Consensus 212 --------~~~~~~-----------------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~ 242 (458)
T 1lvl_A 212 --------SELTAP-----------------------------------------VAESLKKLGIALHLGHSVEGYENGC 242 (458)
T ss_dssp --------HHHHHH-----------------------------------------HHHHHHHHTCEEETTCEEEEEETTE
T ss_pred --------HHHHHH-----------------------------------------HHHHHHHCCCEEEECCEEEEEEeCC
Confidence 111111 122233446666665 56665533
Q ss_pred EEEc--CC--cEEcccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc---ccchHHH
Q 013435 331 AEFI--DG--SIENYDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL---LGASIDA 402 (443)
Q Consensus 331 v~~~--~g--~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~---~~a~~~a 402 (443)
+.+. +| +++++|.||+|+|++|++..+ +...++..+++ ++.+| ++++++.|+|||+|||+... ..|..||
T Consensus 243 v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g 320 (458)
T 1lvl_A 243 LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAID-ERCQTSMHNVWAIGDVAGEPMLAHRAMAQG 320 (458)
T ss_dssp EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCC-TTCBCSSTTEEECGGGGCSSCCHHHHHHHH
T ss_pred EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeEC-CCCcCCCCCEEEeeccCCCcccHHHHHHHH
Confidence 4443 56 579999999999999998443 34557776666 89999 67889999999999998642 2578899
Q ss_pred HHHHHHHHH
Q 013435 403 RRISEDIEH 411 (443)
Q Consensus 403 ~~~a~~i~~ 411 (443)
+.+|.+|.+
T Consensus 321 ~~aa~~i~g 329 (458)
T 1lvl_A 321 EMVAEIIAG 329 (458)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 999999986
No 77
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=99.97 E-value=2.3e-31 Score=261.71 Aligned_cols=286 Identities=19% Similarity=0.155 Sum_probs=193.2
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCC--CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGV--PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
+.+||+|||||++|+++|..|++.|. +|+++|+++.++ |....+ ...+ +.... ....+
T Consensus 3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~-------~~~~~l--~~~~--~~~~~---------~~~~~ 62 (431)
T 1q1r_A 3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP-------HHLPPL--SKAY--LAGKA---------TAESL 62 (431)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC-------BCSGGG--GTTT--TTTCS---------CSGGG
T ss_pred CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC-------CcCCCC--cHHH--hCCCC---------ChHHh
Confidence 35799999999999999999999998 799999987542 110000 0000 00000 00111
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcc-c-E
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRG-P-I 188 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~-~-~ 188 (443)
.....+++++.+++++.++.|+.++... . .|++.++ .++.||+||+||| +.|..|.+||.+. .+ . +
T Consensus 63 ~~~~~~~~~~~gv~~~~~~~v~~i~~~~--~--~v~~~~g-----~~~~~d~lviAtG--~~p~~~~i~G~~~-~~~~~v 130 (431)
T 1q1r_A 63 YLRTPDAYAAQNIQLLGGTQVTAINRDR--Q--QVILSDG-----RALDYDRLVLATG--GRPRPLPVASGAV-GKANNF 130 (431)
T ss_dssp BSSCHHHHHHTTEEEECSCCEEEEETTT--T--EEEETTS-----CEEECSEEEECCC--EEECCCGGGTTHH-HHSTTE
T ss_pred cccCHHHHHhCCCEEEeCCEEEEEECCC--C--EEEECCC-----CEEECCEEEEcCC--CCccCCCCCCccc-CCCceE
Confidence 0011233456788888999999998654 3 3666554 5799999999999 6788888888642 11 0 2
Q ss_pred eecCCCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHH
Q 013435 189 FHSSSYKT-----GELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRL 263 (443)
Q Consensus 189 ~~~~~~~~-----~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 263 (443)
+......+ .....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++|.. ++...
T Consensus 131 ~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~-~~l~~~----------------~~~~~ 193 (431)
T 1q1r_A 131 RYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA-RVLERV----------------TAPPV 193 (431)
T ss_dssp EESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-STTTTT----------------SCHHH
T ss_pred EEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC-ccccch----------------hhHHH
Confidence 22111111 112357899999999999999999999999999999887 333321 11111
Q ss_pred HHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC---C----cEEEc
Q 013435 264 VDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH---H----AAEFI 334 (443)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~---~----~v~~~ 334 (443)
.+.+ .+.+++.+|+++.+ +.++.. + .+.+.
T Consensus 194 ~~~l-----------------------------------------~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~ 232 (431)
T 1q1r_A 194 SAFY-----------------------------------------EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCE 232 (431)
T ss_dssp HHHH-----------------------------------------HHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEET
T ss_pred HHHH-----------------------------------------HHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeC
Confidence 1111 12233345666655 555543 1 36778
Q ss_pred CCcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc-------------ccchHH
Q 013435 335 DGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL-------------LGASID 401 (443)
Q Consensus 335 ~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~-------------~~a~~~ 401 (443)
+|+++++|.||+|+|++|++ .++...++.. ++| |.+| ++++|+.|+|||+|||+... ..|..|
T Consensus 233 ~G~~i~~D~Vv~a~G~~p~~-~l~~~~gl~~-~~g-i~Vd-~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~q 308 (431)
T 1q1r_A 233 DGTRLPADLVIAGIGLIPNC-ELASAAGLQV-DNG-IVIN-EHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQ 308 (431)
T ss_dssp TSCEEECSEEEECCCEEECC-HHHHHTTCCB-SSS-EECC-TTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHH
T ss_pred CCCEEEcCEEEECCCCCcCc-chhhccCCCC-CCC-EEEC-CCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHH
Confidence 89999999999999999998 5777677766 356 8888 77889999999999998531 247789
Q ss_pred HHHHHHHHHHh
Q 013435 402 ARRISEDIEHQ 412 (443)
Q Consensus 402 a~~~a~~i~~~ 412 (443)
|+.+|.+|.+.
T Consensus 309 g~~aa~~i~g~ 319 (431)
T 1q1r_A 309 ARKIAAILCGK 319 (431)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhcCC
Confidence 99999999864
No 78
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=99.96 E-value=9.8e-30 Score=260.60 Aligned_cols=304 Identities=13% Similarity=0.134 Sum_probs=186.7
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecC-C-------CCCccccc-CCCCceeeecCC-------ccccCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERA-N-------CIASLWQL-KTYDRLRLHLPK-------QFCQLPLM 95 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~-~-------~~gg~w~~-~~~~~~~~~~~~-------~~~~~~~~ 95 (443)
...|||+||||||+|+++|..|++.|.+++|+|+. + .+||+|.+ .+.|...+.... ....+ ..
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~-g~ 183 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHF-GW 183 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhC-Cc
Confidence 56789999999999999999999999999999973 2 36666533 112221110000 00000 00
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-----------HcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEE
Q 013435 96 PFPSNFPTYPTKQQFLTYLETYTN-----------HFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLI 164 (443)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vI 164 (443)
..+.. .......++.+++..+.. ..++.+..+. ...++ . ..+.+...+ ++..++.||+||
T Consensus 184 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-~~~~~--~--~~v~v~~~~---g~~~~~~~d~lv 254 (598)
T 2x8g_A 184 SLDRS-KISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAK-GRLIS--P--HEVQITDKN---QKVSTITGNKII 254 (598)
T ss_dssp CCCGG-GCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEE--T--TEEEEECTT---CCEEEEEEEEEE
T ss_pred cccCC-cCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEcC--C--CEEEEEeCC---CCeEEEEeCEEE
Confidence 11100 011345566665544332 3344443322 22222 1 333333222 233579999999
Q ss_pred EccCCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCcccccccc
Q 013435 165 VATGENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMI 244 (443)
Q Consensus 165 iAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~ 244 (443)
+||| +.|+.|++||...+ .++..+.. .....+++++|||+|.+|+|+|..|++.|.+||++.|+ .++|..+
T Consensus 255 iAtG--s~p~~p~i~G~~~~---~~~~~~~~-~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~l~~~d- 325 (598)
T 2x8g_A 255 LATG--ERPKYPEIPGAVEY---GITSDDLF-SLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS--ILLRGFD- 325 (598)
T ss_dssp ECCC--EEECCCSSTTHHHH---CEEHHHHT-TCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CSSTTSC-
T ss_pred EeCC--CCCCCCCCCCcccc---eEcHHHHh-hCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC--cCcCcCC-
Confidence 9999 68888889886432 22222111 12235678999999999999999999999999999987 3334321
Q ss_pred CCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--
Q 013435 245 GRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA-- 322 (443)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-- 322 (443)
....+.+ .+.+++.+|+++.+
T Consensus 326 ----------------~~~~~~~-----------------------------------------~~~l~~~gv~i~~~~~ 348 (598)
T 2x8g_A 326 ----------------QQMAEKV-----------------------------------------GDYMENHGVKFAKLCV 348 (598)
T ss_dssp ----------------HHHHHHH-----------------------------------------HHHHHHTTCEEEETEE
T ss_pred ----------------HHHHHHH-----------------------------------------HHHHHhCCCEEEECCe
Confidence 1111111 11222334454443
Q ss_pred CcEEe--------C---CcE----EEcCCcEEc--ccEEEEccCCCCCCCCC-ccCcCcCccCCCCcCCCCCCCCcCCCc
Q 013435 323 IKRLT--------H---HAA----EFIDGSIEN--YDAIILATGYKSNVPYW-LKDTEMFSEKDGFPRMEFPNGWKGAHG 384 (443)
Q Consensus 323 v~~~~--------~---~~v----~~~~g~~~~--~D~vi~atG~~~~~~~~-~~~~~l~~~~~G~i~~~~~~~~~~~~~ 384 (443)
+.++. . +.+ .+.+|++++ +|.||+|+|++|++..+ +...++..+++|+|.+| ++++|+.|+
T Consensus 349 v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd-~~~~ts~~~ 427 (598)
T 2x8g_A 349 PDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCT-DDEQTTVSN 427 (598)
T ss_dssp EEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCC-TTSBCSSTT
T ss_pred EEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeC-CCCcCCCCC
Confidence 22221 1 122 235676554 99999999999998433 34457877788999999 678899999
Q ss_pred eEEEeeccCC----cccchHHHHHHHHHHHHh
Q 013435 385 LYAVGFNKRG----LLGASIDARRISEDIEHQ 412 (443)
Q Consensus 385 ifaiGd~~~~----~~~a~~~a~~~a~~i~~~ 412 (443)
|||+|||+.+ ...|..+|+.+|.+|.+.
T Consensus 428 VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 459 (598)
T 2x8g_A 428 VYAIGDINAGKPQLTPVAIQAGRYLARRLFAG 459 (598)
T ss_dssp EEECGGGBTTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeeecCCCCccHHHHHHhHHHHHHHHhcC
Confidence 9999999432 236788999999999864
No 79
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=99.96 E-value=5.7e-31 Score=262.69 Aligned_cols=295 Identities=18% Similarity=0.171 Sum_probs=190.1
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
.....++|||||||++|+++|..|.+.+++|+|||+++.+ .|... +++.. .+.....+
T Consensus 38 ~~~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~--~~~Pl------------L~~va--------~G~l~~~~ 95 (502)
T 4g6h_A 38 QHSDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF--LFTPL------------LPSAP--------VGTVDEKS 95 (502)
T ss_dssp CSCSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE--ECGGG------------GGGTT--------TTSSCGGG
T ss_pred CCCCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc--ccccc------------hhHHh--------hccccHHH
Confidence 3445668999999999999999999999999999998743 11100 00000 01111111
Q ss_pred HHHHHHHHHH--HcCCccccceeEEEEEEeCCCCeEEEEEeec-------------CCCcEEEEEeCEEEEccCCCCCCc
Q 013435 110 FLTYLETYTN--HFGLDPVFNTTVVNAEYDHLSRLWRVKTQQG-------------LKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 110 ~~~~l~~~~~--~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~-------------~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
+...++.... +.++++. ..+|++|+.+. ..+.+...++ ...+..++.||++||||| +.++
T Consensus 96 i~~p~~~~~~~~~~~v~~~-~~~v~~ID~~~--k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtG--s~~~ 170 (502)
T 4g6h_A 96 IIEPIVNFALKKKGNVTYY-EAEATSINPDR--NTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVG--AEPN 170 (502)
T ss_dssp GEEEHHHHHTTCSSCEEEE-EEEEEEEEGGG--TEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCC--CEEC
T ss_pred hhhhHHHHHHhhcCCeEEE-EEEEEEEEhhh--CEEEEeecccceeecccccccccccCCceEEeCCEEEEcCC--cccc
Confidence 1111222221 2233333 45688898876 6644443211 011237899999999999 7888
Q ss_pred cCCCCCCCCCcccEeecCCCCC----------------------CCCCCCCeEEEEccCCCHHHHHHHHhhcC-------
Q 013435 175 VPYIEGMDGFRGPIFHSSSYKT----------------------GELFRDKNVLVVGCGNSGMEVSLDLCNYN------- 225 (443)
Q Consensus 175 ~p~~~g~~~~~~~~~~~~~~~~----------------------~~~~~~~~v~ViG~G~~~~e~a~~l~~~g------- 225 (443)
.+.+||.+++ .+......+ .......+++|||||++|+|+|..|++.+
T Consensus 171 ~~~ipG~~e~---a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~ 247 (502)
T 4g6h_A 171 TFGIPGVTDY---GHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKF 247 (502)
T ss_dssp CTTCTTHHHH---CEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHH
T ss_pred cCCccCcccc---cCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhh
Confidence 8899986542 111111110 00012357999999999999999998653
Q ss_pred -------CccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccC
Q 013435 226 -------ARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVS 298 (443)
Q Consensus 226 -------~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (443)
.+|+++.+.+ .++|... +.+.+
T Consensus 248 ~~~~~~~~~V~lve~~~-~il~~~~-----------------~~~~~--------------------------------- 276 (502)
T 4g6h_A 248 LPALAEEVQIHLVEALP-IVLNMFE-----------------KKLSS--------------------------------- 276 (502)
T ss_dssp CHHHHHHCEEEEECSSS-SSSTTSC-----------------HHHHH---------------------------------
T ss_pred cccccccceeEEecccc-ccccCCC-----------------HHHHH---------------------------------
Confidence 5689998888 4555321 11111
Q ss_pred CCcccccccchhhhcCCCeEEecC--CcEEeCCcEEE----cCC----cEEcccEEEEccCCCCCC--CCCccCcCcCcc
Q 013435 299 GKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHAAEF----IDG----SIENYDAIILATGYKSNV--PYWLKDTEMFSE 366 (443)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~v~~----~~g----~~~~~D~vi~atG~~~~~--~~~~~~~~l~~~ 366 (443)
...+.+++.+|+++.+ +++++++++.+ .|| +++++|.||||+|.+|+. ..+....++..+
T Consensus 277 --------~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~ 348 (502)
T 4g6h_A 277 --------YAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNS 348 (502)
T ss_dssp --------HHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTT
T ss_pred --------HHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhcccccc
Confidence 2234455678899888 88888887655 355 369999999999999983 123333455556
Q ss_pred CCCCcCCCCCCCCc-CCCceEEEeeccCCc-----ccchHHHHHHHHHHHHhhH
Q 013435 367 KDGFPRMEFPNGWK-GAHGLYAVGFNKRGL-----LGASIDARRISEDIEHQWN 414 (443)
Q Consensus 367 ~~G~i~~~~~~~~~-~~~~ifaiGd~~~~~-----~~a~~~a~~~a~~i~~~l~ 414 (443)
..|++.|| +++++ +.|+|||+|||+... -.|..||+.+|+||.+..+
T Consensus 349 ~~g~I~Vd-~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~~~~~ 401 (502)
T 4g6h_A 349 SKRGLAVN-DFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDKMAQ 401 (502)
T ss_dssp CCSSEEBC-TTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCceeEC-CccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 78999999 55555 899999999987431 1577899999999987653
No 80
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=99.96 E-value=1.2e-29 Score=248.22 Aligned_cols=283 Identities=16% Similarity=0.131 Sum_probs=193.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHH---cCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTE---KGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~---~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
|.||+|||||++|+++|..|++ .|.+|+|+|+++.++... . ++.. ..+.....++
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~---~--------------~~~~-----~~~~~~~~~~ 58 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRP---A--------------LPHV-----AIGVRDVDEL 58 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECC---S--------------SCCC-----CSSCCCCCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceecc---c--------------hhhc-----ccCCcCHHHH
Confidence 3589999999999999999999 899999999987442110 0 0000 0011112233
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
..++.+.+.+.+++++.+ +|+.++... .. |++.++.. +..++.||+||+||| +.|..|.+||.+. ...+
T Consensus 59 ~~~~~~~~~~~gv~~~~~-~v~~i~~~~--~~--V~~~~g~~-~~~~~~~d~lViAtG--~~~~~~~ipG~~~---~~~~ 127 (409)
T 3h8l_A 59 KVDLSEALPEKGIQFQEG-TVEKIDAKS--SM--VYYTKPDG-SMAEEEYDYVIVGIG--AHLATELVKGWDK---YGYS 127 (409)
T ss_dssp EEEHHHHTGGGTCEEEEC-EEEEEETTT--TE--EEEECTTS-CEEEEECSEEEECCC--CEECGGGSBTHHH---HCEE
T ss_pred HHHHHHHHhhCCeEEEEe-eEEEEeCCC--CE--EEEccCCc-ccceeeCCEEEECCC--CCcCccCCCChhh---cCcC
Confidence 344555666778888776 788887654 44 56655422 336799999999999 5777778888653 2234
Q ss_pred cCCCCCCCCC------CCCeEEEEccC-------------------C------CHHHHHHH----HhhcCC----ccEEE
Q 013435 191 SSSYKTGELF------RDKNVLVVGCG-------------------N------SGMEVSLD----LCNYNA----RPSLV 231 (443)
Q Consensus 191 ~~~~~~~~~~------~~~~v~ViG~G-------------------~------~~~e~a~~----l~~~g~----~Vt~i 231 (443)
.+...+.... ..++++|||+| . .++|+|.. +.+.|. +|+++
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~ 207 (409)
T 3h8l_A 128 VCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVF 207 (409)
T ss_dssp SSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEE
Confidence 4433322111 12677899999 2 36787754 445663 79999
Q ss_pred EecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhh
Q 013435 232 VRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAK 311 (443)
Q Consensus 232 ~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (443)
.+.+ .+|... .... ..+.+.
T Consensus 208 ~~~~--~l~~~~-----------------~~~~-----------------------------------------~~~~~~ 227 (409)
T 3h8l_A 208 SPGE--YLSDLS-----------------PNSR-----------------------------------------KAVASI 227 (409)
T ss_dssp CSSS--SSTTBC-----------------HHHH-----------------------------------------HHHHHH
T ss_pred eCCc--cccccC-----------------HHHH-----------------------------------------HHHHHH
Confidence 8776 333221 0111 112234
Q ss_pred hcCCCeEEecC--CcEEeCCcEEEcCCcEEcccEEEEccCCCCCCCCCccCc--CcCccCCCCcCCCCCCCCc-CCCceE
Q 013435 312 IRSGNIKVCRA--IKRLTHHAAEFIDGSIENYDAIILATGYKSNVPYWLKDT--EMFSEKDGFPRMEFPNGWK-GAHGLY 386 (443)
Q Consensus 312 ~~~~~v~v~~~--v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~--~l~~~~~G~i~~~~~~~~~-~~~~if 386 (443)
+++.+|+++.+ |++++.+++.+.+|+++++|.||+|+|+.|+ .++... ++ .+++|++.+| +..++ +.|+||
T Consensus 228 l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~--~~l~~~~~~l-~~~~G~i~vd-~~~~~~~~~~vf 303 (409)
T 3h8l_A 228 YNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGN--PALKNSTPDL-VDDGGFIPTD-LNMVSIKYDNVY 303 (409)
T ss_dssp HHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECC--HHHHTSCGGG-SCTTSCBCBB-TTSBBSSCTTEE
T ss_pred HHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCcc--HHHHhccccC-cCCCCCEEeC-cccccCCCCCEE
Confidence 44567888876 8899999999999999999999999999998 455555 55 3578999999 45565 899999
Q ss_pred EEeeccCC-----cccchHHHHHHHHHHHHhh
Q 013435 387 AVGFNKRG-----LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 387 aiGd~~~~-----~~~a~~~a~~~a~~i~~~l 413 (443)
++|||+.. ...|..||+.+|++|...+
T Consensus 304 a~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 304 AVGDANSMTVPKLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp ECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred EeehhccCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999852 2357889999999999888
No 81
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=99.95 E-value=2.2e-29 Score=248.37 Aligned_cols=289 Identities=13% Similarity=0.170 Sum_probs=197.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHH---cCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTE---KGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~---~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
++||+|||||++|+++|..|++ .|.+|+|||+.+.+.. ... ++. ...+....+++
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~-------~~~----------~~~-----~~~g~~~~~~~ 61 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQF-------VPS----------NPW-----VGVGWKERDDI 61 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEEC-------GGG----------HHH-----HHHTSSCHHHH
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcc-------cCC----------ccc-----cccCccCHHHH
Confidence 5789999999999999999999 7999999999874310 000 000 00112345666
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
...+.+++++.+++++. .+|+.++... . .|++.++ .++.||+||+||| +.+..|.+||.....+..+.
T Consensus 62 ~~~l~~~~~~~gv~~~~-~~v~~id~~~--~--~V~~~~g-----~~i~~d~lviAtG--~~~~~~~ipG~~~~~~~~~~ 129 (437)
T 3sx6_A 62 AFPIRHYVERKGIHFIA-QSAEQIDAEA--Q--NITLADG-----NTVHYDYLMIATG--PKLAFENVPGSDPHEGPVQS 129 (437)
T ss_dssp EEECHHHHHTTTCEEEC-SCEEEEETTT--T--EEEETTS-----CEEECSEEEECCC--CEECGGGSTTCSTTTSSEEC
T ss_pred HHHHHHHHHHCCCEEEE-eEEEEEEcCC--C--EEEECCC-----CEEECCEEEECCC--CCcCcccCCCCCcccCccee
Confidence 66667777778888764 5799988655 4 3666654 5799999999999 67888889998754333444
Q ss_pred cCCCCCCCC--------CCCCeEEEEccCCCH------HHHH----HHHhhcCCc-----cEEEEecCCccccccccCCC
Q 013435 191 SSSYKTGEL--------FRDKNVLVVGCGNSG------MEVS----LDLCNYNAR-----PSLVVRDTVHVLPQEMIGRS 247 (443)
Q Consensus 191 ~~~~~~~~~--------~~~~~v~ViG~G~~~------~e~a----~~l~~~g~~-----Vt~i~r~~~~~lp~~~~~~~ 247 (443)
.+...+... ..+++++|||+|++| +|+| ..+.+.|.+ |+++.+.+. +.+....+
T Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~-~~~~~l~~-- 206 (437)
T 3sx6_A 130 ICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPY-IGHLGIQG-- 206 (437)
T ss_dssp CSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSS-TTCTTTTC--
T ss_pred cccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCcc-ccccccCc--
Confidence 433322211 114567899997765 8888 555566654 999998872 21110000
Q ss_pred ccchhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcE
Q 013435 248 TFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKR 325 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~ 325 (443)
++ .....+.+.+++.+|+++.+ +++
T Consensus 207 -----------~~------------------------------------------~~~~~~~~~l~~~gI~~~~~~~v~~ 233 (437)
T 3sx6_A 207 -----------VG------------------------------------------DSKGILTKGLKEEGIEAYTNCKVTK 233 (437)
T ss_dssp -----------CT------------------------------------------THHHHHHHHHHHTTCEEECSEEEEE
T ss_pred -----------ch------------------------------------------HHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 00 01111234455668888877 888
Q ss_pred EeCCcEEEcC---------CcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCc-CCCceEEEeeccCCc
Q 013435 326 LTHHAAEFID---------GSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWK-GAHGLYAVGFNKRGL 395 (443)
Q Consensus 326 ~~~~~v~~~~---------g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~-~~~~ifaiGd~~~~~ 395 (443)
++.+++.+.+ +.++++|.+++++|+.++. .+....++ .+++|++.+|. ++++ +.|+|||+|||+...
T Consensus 234 v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~-~~~~~~gl-~~~~G~i~Vd~-~l~t~~~~~Ifa~GD~~~~~ 310 (437)
T 3sx6_A 234 VEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVP-AVAGVEGL-CNPGGFVLVDE-HQRSKKYANIFAAGIAIAIP 310 (437)
T ss_dssp EETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECCH-HHHTSTTT-BCTTSCBCBCT-TSBBSSCTTEEECGGGBCCC
T ss_pred EECCeEEEEecccCCccccceEEEEeEEEEcCCCcCch-hhhccccc-cCCCCcEEeCh-hccCCCCCCEEEEEEEeccC
Confidence 8888877754 5679999999999999884 23322466 46889999994 5665 899999999997521
Q ss_pred ---------------ccchHHHHHHHHHHHHhhHH
Q 013435 396 ---------------LGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 396 ---------------~~a~~~a~~~a~~i~~~l~~ 415 (443)
..|..||+.+|++|...+..
T Consensus 311 ~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g 345 (437)
T 3sx6_A 311 PVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEG 345 (437)
T ss_dssp CSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 15778999999999998865
No 82
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=99.95 E-value=3e-28 Score=262.26 Aligned_cols=297 Identities=15% Similarity=0.131 Sum_probs=186.9
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
...+||+||||||+|+++|..|++.|+ +|+|||+.+.+||.+... ++ .+....++
T Consensus 185 ~~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~---------------ip---------~~~~~~~~ 240 (1025)
T 1gte_A 185 AYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE---------------IP---------QFRLPYDV 240 (1025)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT---------------SC---------TTTSCHHH
T ss_pred cCCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccccc---------------CC---------cccCCHHH
Confidence 356899999999999999999999999 799999998888865331 11 11122456
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCC-CCCCCCcccEe
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYI-EGMDGFRGPIF 189 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~-~g~~~~~~~~~ 189 (443)
.++..+++++.+++++.++.+.. .. +++.++ ..+.||+||+|||.+ .|+.+++ +|.....+ ++
T Consensus 241 ~~~~~~~~~~~gv~~~~~~~v~~-------~~--v~~~~~-----~~~~~d~vvlAtGa~-~p~~l~~~~G~~~~~g-v~ 304 (1025)
T 1gte_A 241 VNFEIELMKDLGVKIICGKSLSE-------NE--ITLNTL-----KEEGYKAAFIGIGLP-EPKTDDIFQGLTQDQG-FY 304 (1025)
T ss_dssp HHHHHHHHHTTTCEEEESCCBST-------TS--BCHHHH-----HHTTCCEEEECCCCC-EECCCGGGTTCCTTTT-EE
T ss_pred HHHHHHHHHHCCcEEEcccEecc-------ce--EEhhhc-----CccCCCEEEEecCCC-CCCCCCCCCCCCCCCC-EE
Confidence 66667777888988887775521 11 333332 347899999999952 4554443 45432222 22
Q ss_pred ecCCC--------------CC-CCCCCCCeEEEEccCCCHHHHHHHHhhcCC-ccEEEEecCCccccccccCCCccchhh
Q 013435 190 HSSSY--------------KT-GELFRDKNVLVVGCGNSGMEVSLDLCNYNA-RPSLVVRDTVHVLPQEMIGRSTFGLSM 253 (443)
Q Consensus 190 ~~~~~--------------~~-~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~Vt~i~r~~~~~lp~~~~~~~~~~~~~ 253 (443)
+..++ .+ .....+++|+|||||.+|+|+|..+.+.|. +||+++|++...+|....
T Consensus 305 ~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~--------- 375 (1025)
T 1gte_A 305 TSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPE--------- 375 (1025)
T ss_dssp EHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHH---------
T ss_pred EhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHH---------
Confidence 21110 11 112346799999999999999999999996 899999988444443210
Q ss_pred hhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh--cCCCeE-EecCCcEEeCCc
Q 013435 254 CLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI--RSGNIK-VCRAIKRLTHHA 330 (443)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~-v~~~v~~~~~~~ 330 (443)
+. +.+ .+.++.. ........+ .++++. +...-.+.+.+|
T Consensus 376 --------e~-~~~------------~~~Gv~~-----------------~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g 417 (1025)
T 1gte_A 376 --------EV-ELA------------KEEKCEF-----------------LPFLSPRKVIVKGGRIVAVQFVRTEQDETG 417 (1025)
T ss_dssp --------HH-HHH------------HHTTCEE-----------------ECSEEEEEEEEETTEEEEEEEEEEEECTTS
T ss_pred --------HH-HHH------------HHcCCEE-----------------EeCCCceEEEccCCeEEEEEEEEeEEcCCC
Confidence 00 000 0001100 000000000 011111 000000011112
Q ss_pred --EEEcC-CcEEcccEEEEccCCCCCCCCCccCc-CcCccCCCCcCCCCCCCCcCCCceEEEeeccCC---cccchHHHH
Q 013435 331 --AEFID-GSIENYDAIILATGYKSNVPYWLKDT-EMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG---LLGASIDAR 403 (443)
Q Consensus 331 --v~~~~-g~~~~~D~vi~atG~~~~~~~~~~~~-~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~---~~~a~~~a~ 403 (443)
+...+ ..++++|.||+|+|++|+...++.+. ++..+++|+|.+|..+++|+.|+|||+||++.. ...|..+|+
T Consensus 418 ~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~ 497 (1025)
T 1gte_A 418 KWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGK 497 (1025)
T ss_dssp CEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHH
T ss_pred CcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHH
Confidence 11111 13689999999999988654566553 777778899999954788999999999999874 347889999
Q ss_pred HHHHHHHHhhHH
Q 013435 404 RISEDIEHQWNS 415 (443)
Q Consensus 404 ~~a~~i~~~l~~ 415 (443)
.+|++|.+++..
T Consensus 498 ~aA~~i~~~L~~ 509 (1025)
T 1gte_A 498 QASWYIHKYIQA 509 (1025)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988864
No 83
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=99.95 E-value=2e-28 Score=241.64 Aligned_cols=299 Identities=16% Similarity=0.120 Sum_probs=187.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHH-c------CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTE-K------GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPT 106 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~-~------g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (443)
.+||+||||||+|+++|..|.+ . |.+|+|||+.+.+||.|+.... +.++.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~-----------------------p~~~~ 59 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVA-----------------------PDHPK 59 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSC-----------------------TTCTG
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccC-----------------------CCCCC
Confidence 4689999999999999999999 7 9999999999888887754211 12233
Q ss_pred HHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcc
Q 013435 107 KQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRG 186 (443)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~ 186 (443)
..++..++.+++.+.+++++.+..+ + .. |++.+ ..+.||+||+|||.. .+..|.+||.+ +.+
T Consensus 60 ~~~~~~~~~~~~~~~~v~~~~~v~v------~--~~--v~~~~------~~~~~d~lViAtG~~-~~~~~~ipG~~-~~g 121 (456)
T 1lqt_A 60 IKSISKQFEKTAEDPRFRFFGNVVV------G--EH--VQPGE------LSERYDAVIYAVGAQ-SDRMLNIPGED-LPG 121 (456)
T ss_dssp GGGGHHHHHHHHTSTTEEEEESCCB------T--TT--BCHHH------HHHHSSEEEECCCCC-EECCCCCTTTT-STT
T ss_pred HHHHHHHHHHHHhcCCCEEEeeEEE------C--CE--EEECC------CeEeCCEEEEeeCCC-CCCCCCCCCCC-CCC
Confidence 4566777777777777776655432 1 11 33333 247899999999952 35667888875 333
Q ss_pred cEeecCCC-----------CCCCCCCCCeEEEEccCCCHHHHHHHHhhc--------------------C-CccEEEEec
Q 013435 187 PIFHSSSY-----------KTGELFRDKNVLVVGCGNSGMEVSLDLCNY--------------------N-ARPSLVVRD 234 (443)
Q Consensus 187 ~~~~~~~~-----------~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~--------------------g-~~Vt~i~r~ 234 (443)
+++..++ ++.....+++|+|||+|++|+|+|..|++. + .+|+++.|+
T Consensus 122 -v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~ 200 (456)
T 1lqt_A 122 -SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR 200 (456)
T ss_dssp -EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred -cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecC
Confidence 2322211 222234689999999999999999999974 4 589999998
Q ss_pred CCccccccc-------cCCCccchhhhhhhhc----hhH--HHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCc
Q 013435 235 TVHVLPQEM-------IGRSTFGLSMCLLKWF----PVR--LVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKT 301 (443)
Q Consensus 235 ~~~~lp~~~-------~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (443)
+. +.+... ...+...... ...-+ ... ...+..+.....+.
T Consensus 201 ~~-~~~~f~~~elrel~~lp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------------------- 253 (456)
T 1lqt_A 201 GP-LQAAFTTLELRELADLDGVDVVI-DPAELDGITDEDAAAVGKVCKQNIKVLR------------------------- 253 (456)
T ss_dssp CG-GGCCCCHHHHHHGGGCTTEEEEC-CGGGGTTCCHHHHHHHCHHHHHHHHHHH-------------------------
T ss_pred Ch-hhhccChHHHHHhhcCCCceeee-ChHHhccchhhhhhhccHHHHHHHHHHH-------------------------
Confidence 83 222110 0000000000 00000 000 00111111011110
Q ss_pred ccccccchhhhcC------CCeEEecC--CcEEeCC----cEEEc----------------CC--cEEcccEEEEccCCC
Q 013435 302 PVLDVGTLAKIRS------GNIKVCRA--IKRLTHH----AAEFI----------------DG--SIENYDAIILATGYK 351 (443)
Q Consensus 302 ~~~~~~~~~~~~~------~~v~v~~~--v~~~~~~----~v~~~----------------~g--~~~~~D~vi~atG~~ 351 (443)
+.+.+ .+|+++.+ +.++..+ ++.+. +| ++++||.||+|+|++
T Consensus 254 --------~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~ 325 (456)
T 1lqt_A 254 --------GYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYR 325 (456)
T ss_dssp --------HHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEE
T ss_pred --------HHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccc
Confidence 01111 34555554 4444432 24443 34 468999999999999
Q ss_pred CCCCCCccCcCcCccCCCCcCCCCCCCC-cCCCceEEEeeccCC----cccchHHHHHHHHHHHHhhHH
Q 013435 352 SNVPYWLKDTEMFSEKDGFPRMEFPNGW-KGAHGLYAVGFNKRG----LLGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 352 ~~~~~~~~~~~l~~~~~G~i~~~~~~~~-~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~l~~ 415 (443)
|+. + .++..++.|++.+| +.++ ++.|+|||+|||+.+ +..|..+|+.+|.+|...+..
T Consensus 326 p~~--l---~gl~~d~~g~i~vn-~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~~l~~ 388 (456)
T 1lqt_A 326 GVP--T---PGLPFDDQSGTIPN-VGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGN 388 (456)
T ss_dssp CCC--C---TTSCCBTTTTBCCE-ETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCC--C---CCCcccCCCCeeEC-CCCcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 996 2 34555777889888 4455 789999999999743 225788999999999988854
No 84
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=99.94 E-value=7.8e-28 Score=237.63 Aligned_cols=311 Identities=15% Similarity=0.108 Sum_probs=187.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
..+||+|||||++|+++|..|.+.| .+|+|||+.+.++|.|+.... +.++...++
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~-----------------------p~~~~~~~~ 61 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVA-----------------------PDHPEVKNV 61 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSC-----------------------TTCGGGGGH
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccC-----------------------CCCccHHHH
Confidence 4579999999999999999999998 999999999988887755321 112233556
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEee
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFH 190 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~ 190 (443)
..++.+++++.+++++.++.|. .. |++.+ ..+.||+||+|||.. .+..|++||.+. .+ +++
T Consensus 62 ~~~~~~~~~~~gv~~~~~~~v~--------~~--V~~~~------~~~~~d~lVlAtGs~-~~~~~~ipG~~~-~g-v~~ 122 (460)
T 1cjc_A 62 INTFTQTARSDRCAFYGNVEVG--------RD--VTVQE------LQDAYHAVVLSYGAE-DHQALDIPGEEL-PG-VFS 122 (460)
T ss_dssp HHHHHHHHTSTTEEEEBSCCBT--------TT--BCHHH------HHHHSSEEEECCCCC-EECCCCCTTTTS-TT-EEE
T ss_pred HHHHHHHHHhCCcEEEeeeEEe--------eE--EEecc------ceEEcCEEEEecCcC-CCCCCCCCCCCC-Cc-EEE
Confidence 6777777877888877776551 11 33332 247899999999953 236778888652 22 222
Q ss_pred cCCC----------CCC-CCCCCCeEEEEccCCCHHHHHHHHh--------------------hcCC-ccEEEEecCCcc
Q 013435 191 SSSY----------KTG-ELFRDKNVLVVGCGNSGMEVSLDLC--------------------NYNA-RPSLVVRDTVHV 238 (443)
Q Consensus 191 ~~~~----------~~~-~~~~~~~v~ViG~G~~~~e~a~~l~--------------------~~g~-~Vt~i~r~~~~~ 238 (443)
..++ ... ....+++|+|||+|++|+|+|..|+ ..+. +|+++.|++...
T Consensus 123 ~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~ 202 (460)
T 1cjc_A 123 ARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQ 202 (460)
T ss_dssp HHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGG
T ss_pred HHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHh
Confidence 2111 111 1235799999999999999999999 4565 799999988321
Q ss_pred cccc---cc---CCCcc-------chh--hhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCccc
Q 013435 239 LPQE---MI---GRSTF-------GLS--MCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPV 303 (443)
Q Consensus 239 lp~~---~~---~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (443)
.+.. .. ..+.. .+. ......++. ...+....+..........++..
T Consensus 203 ~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~------------------ 263 (460)
T 1cjc_A 203 VAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAAR-PRKRLMELLLRTATEKPGVEEAA------------------ 263 (460)
T ss_dssp CCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCH-HHHHHHHHHHHHHHSCCCHHHHH------------------
T ss_pred hccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccH-HHHHHHHHHHHHHHhcccccccc------------------
Confidence 1100 00 00000 000 000000110 11111111111111000000000
Q ss_pred ccccchhhhcCCCeEEecC--CcEEeCC-------cEEEc---------------CC--cEEcccEEEEccCCCCCCCCC
Q 013435 304 LDVGTLAKIRSGNIKVCRA--IKRLTHH-------AAEFI---------------DG--SIENYDAIILATGYKSNVPYW 357 (443)
Q Consensus 304 ~~~~~~~~~~~~~v~v~~~--v~~~~~~-------~v~~~---------------~g--~~~~~D~vi~atG~~~~~~~~ 357 (443)
.......+|+++.+ +.++..+ ++.+. +| ++++||.||+|+|++|+. +
T Consensus 264 -----~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~--l 336 (460)
T 1cjc_A 264 -----RRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP--I 336 (460)
T ss_dssp -----HHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC--C
T ss_pred -----CCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC--C
Confidence 00001133444443 3333321 13332 34 579999999999999996 2
Q ss_pred ccCcCc-CccCCCCcCCCCCCCCcC-CCceEEEeeccCC----cccchHHHHHHHHHHHHhhHH
Q 013435 358 LKDTEM-FSEKDGFPRMEFPNGWKG-AHGLYAVGFNKRG----LLGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 358 ~~~~~l-~~~~~G~i~~~~~~~~~~-~~~ifaiGd~~~~----~~~a~~~a~~~a~~i~~~l~~ 415 (443)
.++ ..++.|.+.+| +.++++ .|+|||+|||+.+ +..|..+|+.+|.+|...+..
T Consensus 337 ---~gl~~~d~~g~i~vn-~~~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~~l~~ 396 (460)
T 1cjc_A 337 ---DPSVPFDPKLGVVPN-MEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKA 396 (460)
T ss_dssp ---CTTSCCBTTTTBCCE-ETTEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCcccccCCCeeEC-CCCcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 355 56777889998 677777 7999999999853 226888999999999988754
No 85
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=99.94 E-value=4.1e-29 Score=249.62 Aligned_cols=302 Identities=16% Similarity=0.141 Sum_probs=187.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCceeeec--CC--ccccCCCCCCCC------C
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLRLHL--PK--QFCQLPLMPFPS------N 100 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~--~~--~~~~~~~~~~~~------~ 100 (443)
..+||+|||||++|+++|..|.+. +.+|+|||+++.++-. ........... +. ....+...+... .
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~--r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYM--RPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQP 87 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBC--SGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSC
T ss_pred CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCC--CCCCCHHhhcCCccchhhcccccccccccccccccc
Confidence 357899999999999999999888 7899999998765411 00000000000 00 000000000000 0
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCC
Q 013435 101 FPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEG 180 (443)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g 180 (443)
...+.....+. ...+.+++++.++.|+.++... . .|++.++ .++.||+||+||| ++|..|++++
T Consensus 88 ~~~~~~~~~l~-----~~~~~gv~~~~g~~v~~id~~~--~--~V~~~~g-----~~i~yd~lviATG--s~p~~~~~~~ 151 (493)
T 1m6i_A 88 PSFYVSAQDLP-----HIENGGVAVLTGKKVVQLDVRD--N--MVKLNDG-----SQITYEKCLIATG--GTPRSLSAID 151 (493)
T ss_dssp GGGSBCTTTTT-----TSTTCEEEEEETCCEEEEEGGG--T--EEEETTS-----CEEEEEEEEECCC--EEECCCHHHH
T ss_pred hHhhcchhhhh-----hhhcCCeEEEcCCEEEEEECCC--C--EEEECCC-----CEEECCEEEECCC--CCCCCCCCcc
Confidence 00000000110 0123467788888999998755 3 3666654 5799999999999 6776665544
Q ss_pred CCC--CcccEeecCCCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhh----cCCccEEEEecCCccccccccCCCcc
Q 013435 181 MDG--FRGPIFHSSSYKTG-----ELFRDKNVLVVGCGNSGMEVSLDLCN----YNARPSLVVRDTVHVLPQEMIGRSTF 249 (443)
Q Consensus 181 ~~~--~~~~~~~~~~~~~~-----~~~~~~~v~ViG~G~~~~e~a~~l~~----~g~~Vt~i~r~~~~~lp~~~~~~~~~ 249 (443)
... +...+.......+. ....+++|+|||+|.+|+|+|..|++ .|.+|+++.+.+. .+++
T Consensus 152 ~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~-~~~~-------- 222 (493)
T 1m6i_A 152 RAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG-NMGK-------- 222 (493)
T ss_dssp TSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS-TTTT--------
T ss_pred cccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc-cccc--------
Confidence 211 11112221111110 11247899999999999999999987 4678999877652 1111
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe
Q 013435 250 GLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT 327 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~ 327 (443)
.++...... +.+.+++.+|+++.+ |+++.
T Consensus 223 --------~l~~~~~~~-----------------------------------------~~~~l~~~GV~v~~~~~V~~i~ 253 (493)
T 1m6i_A 223 --------ILPEYLSNW-----------------------------------------TMEKVRREGVKVMPNAIVQSVG 253 (493)
T ss_dssp --------TSCHHHHHH-----------------------------------------HHHHHHTTTCEEECSCCEEEEE
T ss_pred --------cCCHHHHHH-----------------------------------------HHHHHHhcCCEEEeCCEEEEEE
Confidence 111111111 123344567777776 66664
Q ss_pred C--C--cEEEcCCcEEcccEEEEccCCCCCCCCCccCcCcCccC-CCCcCCCCCCCCcCCCceEEEeeccCC--------
Q 013435 328 H--H--AAEFIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEK-DGFPRMEFPNGWKGAHGLYAVGFNKRG-------- 394 (443)
Q Consensus 328 ~--~--~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~-~G~i~~~~~~~~~~~~~ifaiGd~~~~-------- 394 (443)
. + .+.+.+|+++++|.||+|+|+.|++ .++...++..++ +|.+.+| +++++ .|+|||+|||+..
T Consensus 254 ~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~-~l~~~~gl~~~~~~ggi~Vd-~~l~t-~~~IyA~GD~a~~~~~~~g~~ 330 (493)
T 1m6i_A 254 VSSGKLLIKLKDGRKVETDHIVAAVGLEPNV-ELAKTGGLEIDSDFGGFRVN-AELQA-RSNIWVAGDAACFYDIKLGRR 330 (493)
T ss_dssp EETTEEEEEETTSCEEEESEEEECCCEEECC-TTHHHHTCCBCTTTCSEECC-TTCEE-ETTEEECGGGEEEEETTTEEE
T ss_pred ecCCeEEEEECCCCEEECCEEEECCCCCccH-HHHHHcCCccccCCCcEEEC-CCccc-CCCeeEeeeeEeccCcccCcc
Confidence 3 2 3677899999999999999999998 576666777654 5888899 56666 6999999999752
Q ss_pred ----cccchHHHHHHHHHHHHhh
Q 013435 395 ----LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 395 ----~~~a~~~a~~~a~~i~~~l 413 (443)
...|..||+.+|.+|.+..
T Consensus 331 ~~~~~~~A~~qg~~aa~ni~g~~ 353 (493)
T 1m6i_A 331 RVEHHDHAVVSGRLAGENMTGAA 353 (493)
T ss_dssp CCCCHHHHHHHHHHHHHHHTSCC
T ss_pred ccchHHHHHHHHHHHHHHhcCCC
Confidence 1157889999999998653
No 86
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=99.94 E-value=3.2e-28 Score=252.72 Aligned_cols=272 Identities=15% Similarity=0.101 Sum_probs=194.0
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
+....+||+|||||++|+++|..|++.|++|+|+|+.+.+||.|.... ..+.+.....
T Consensus 387 ~~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~----------------------~~p~~~~~~~ 444 (690)
T 3k30_A 387 AKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQES----------------------ALPGLSAWGR 444 (690)
T ss_dssp CCSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHH----------------------TSTTCGGGGH
T ss_pred cccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeecc----------------------CCCchhHHHH
Confidence 345678999999999999999999999999999999999998764310 0112223467
Q ss_pred HHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC------CccCCCCCCC
Q 013435 110 FLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE------EVVPYIEGMD 182 (443)
Q Consensus 110 ~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~------p~~p~~~g~~ 182 (443)
+..++.....++ +++++.++.| +..+. ..+.+|+||+|||.... +..|.+||.+
T Consensus 445 ~~~~~~~~~~~~~gv~~~~~~~v--------------~~~~~-----~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~ 505 (690)
T 3k30_A 445 VKEYREAVLAELPNVEIYRESPM--------------TGDDI-----VEFGFEHVITATGATWRTDGVARFHTTALPIAE 505 (690)
T ss_dssp HHHHHHHHHHTCTTEEEESSCCC--------------CHHHH-----HHTTCCEEEECCCEEECSSCCSSSCSSCCCBCT
T ss_pred HHHHHHHHHHHcCCCEEEECCee--------------cHHHH-----hhcCCCEEEEcCCCccccccccccCCCCCCCCC
Confidence 778888888876 7776666433 11111 46789999999995322 5567788866
Q ss_pred CCcccEeecCCCCCCCCCCCCeEEEEc--cCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhch
Q 013435 183 GFRGPIFHSSSYKTGELFRDKNVLVVG--CGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFP 260 (443)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~ViG--~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~ 260 (443)
. ..+++..+........+++|+||| +|.+|+|+|..|.+.|.+|+++.+.+. +++....
T Consensus 506 ~--~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~-l~~~~~~---------------- 566 (690)
T 3k30_A 506 G--MQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQ-VSSWTNN---------------- 566 (690)
T ss_dssp T--SEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSS-TTGGGGG----------------
T ss_pred C--CcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccc-ccccccc----------------
Confidence 3 234554444444445678999999 999999999999999999999998873 3232110
Q ss_pred hHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCcEEEc----
Q 013435 261 VRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHAAEFI---- 334 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~v~~~---- 334 (443)
+.....+.+.+++.+|+++.+ ++++..+++.+.
T Consensus 567 -----------------------------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~ 605 (690)
T 3k30_A 567 -----------------------------------------TFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYA 605 (690)
T ss_dssp -----------------------------------------GTCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTT
T ss_pred -----------------------------------------chhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccC
Confidence 000111234455668888877 788888776553
Q ss_pred -CCcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC--cccchHHHHHHHHHHHH
Q 013435 335 -DGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG--LLGASIDARRISEDIEH 411 (443)
Q Consensus 335 -~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~--~~~a~~~a~~~a~~i~~ 411 (443)
+++++++|.||+|+|++|++ .+..+.+. .+. .++.++||++|||+.. +..|..+|+.+|.+|..
T Consensus 606 ~~~~~i~aD~VV~A~G~~p~~-~l~~~l~~----~~~--------~t~~~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~ 672 (690)
T 3k30_A 606 SIERELECDAVVMVTARLPRE-ELYLDLVA----RRD--------AGEIASVRGIGDAWAPGTIAAAVWSGRRAAEEFDA 672 (690)
T ss_dssp CCEEEEECSEEEEESCEEECC-HHHHHHHH----HHH--------HTSCSEEEECGGGTSCBCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCEEEECCCCCCCh-HHHHHHhh----hhc--------ccCCCCEEEEeCCCchhhHHHHHHHHHHHHHHHHh
Confidence 44579999999999999997 45443322 111 5678999999999864 34688999999999998
Q ss_pred hhHH
Q 013435 412 QWNS 415 (443)
Q Consensus 412 ~l~~ 415 (443)
.+..
T Consensus 673 ~l~g 676 (690)
T 3k30_A 673 VLPS 676 (690)
T ss_dssp CCCC
T ss_pred hccC
Confidence 8643
No 87
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.93 E-value=4.3e-26 Score=243.90 Aligned_cols=280 Identities=15% Similarity=0.134 Sum_probs=188.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
..+||+||||||+|+++|..|++.|++|+|||+++.+||.|.. . +...+ .. ....++..
T Consensus 127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~-~-~k~~i------------------~~-~~~~~~~~ 185 (965)
T 2gag_A 127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD-T-AGEQI------------------DG-MDSSAWIE 185 (965)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGG-S-SCCEE------------------TT-EEHHHHHH
T ss_pred cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceecc-C-Ccccc------------------CC-CCHHHHHH
Confidence 4579999999999999999999999999999999989987763 1 10000 00 12345555
Q ss_pred HHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeec---------C-CCcEEEEEeCEEEEccCCCCCCccCCCCCC
Q 013435 113 YLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQG---------L-KQEETVYLCQWLIVATGENAEEVVPYIEGM 181 (443)
Q Consensus 113 ~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~---------~-~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~ 181 (443)
.+.+.+.+. +++++.++.|..+.... ....+..... . .+....+.||+||+||| +.|+.|.+||.
T Consensus 186 ~~~~~l~~~~~v~~~~~~~V~~i~~~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATG--s~p~~~~ipG~ 261 (965)
T 2gag_A 186 QVTSELAEAEETTHLQRTTVFGSYDAN--YLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATG--AHERPIVFENN 261 (965)
T ss_dssp HHHHHHHHSTTEEEESSEEEEEEETTT--EEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCC--EEECCCCCBTC
T ss_pred HHHHHHhhcCCcEEEeCCEEEeeecCC--ceeeeEeecccccccccccCCCCceEEEECCEEEECCC--CccCCCCCCCC
Confidence 555555554 78888898898876432 1111111000 0 01124799999999999 66777888886
Q ss_pred CCCcccEeecCC---CCC-CCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhh
Q 013435 182 DGFRGPIFHSSS---YKT-GELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLK 257 (443)
Q Consensus 182 ~~~~~~~~~~~~---~~~-~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~ 257 (443)
+. .+ +++... +.. ....++++|+|||+|.+|+|+|..|++.|.+|+++.+++. +++.
T Consensus 262 ~~-~g-v~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~-~~~~---------------- 322 (965)
T 2gag_A 262 DR-PG-IMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSS-ISAA---------------- 322 (965)
T ss_dssp CS-TT-EEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSS-CCHH----------------
T ss_pred CC-CC-EEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCc-cchh----------------
Confidence 53 22 222211 111 1223568999999999999999999999999999999873 2110
Q ss_pred hchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC--C----
Q 013435 258 WFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH--H---- 329 (443)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~--~---- 329 (443)
.+.+++.+|+++.+ +.++.. +
T Consensus 323 ---------------------------------------------------~~~l~~~GV~v~~~~~v~~i~~~~~~~v~ 351 (965)
T 2gag_A 323 ---------------------------------------------------AAQAVADGVQVISGSVVVDTEADENGELS 351 (965)
T ss_dssp ---------------------------------------------------HHHHHHTTCCEEETEEEEEEEECTTSCEE
T ss_pred ---------------------------------------------------HHHHHhCCeEEEeCCEeEEEeccCCCCEE
Confidence 11222345666655 555543 2
Q ss_pred cEEEcC-------C--cEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCC----CcCCCceEEEeeccCC--
Q 013435 330 AAEFID-------G--SIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNG----WKGAHGLYAVGFNKRG-- 394 (443)
Q Consensus 330 ~v~~~~-------g--~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~----~~~~~~ifaiGd~~~~-- 394 (443)
++.+.+ | +++++|.||+|+|++|++ .++.. ..|.+.+|.... .++.|+|||+|||+..
T Consensus 352 ~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~-~l~~~------~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~ 424 (965)
T 2gag_A 352 AIVVAELDEARELGGTQRFEADVLAVAGGFNPVV-HLHSQ------RQGKLDWDTTIHAFVPADAVANQHLAGAMTGRLD 424 (965)
T ss_dssp EEEEEEECTTCCEEEEEEEECSEEEEECCEEECC-HHHHH------TTCCEEEETTTTEEEECSCCTTEEECGGGGTCCS
T ss_pred EEEEEeccccCCCCceEEEEcCEEEECCCcCcCh-HHHHh------CCCcEEEcCcccccccCCCCCCEEEEEecCCchh
Confidence 455554 4 579999999999999997 44332 245666663222 2789999999999864
Q ss_pred cccchHHHHHHHHHHHHhhH
Q 013435 395 LLGASIDARRISEDIEHQWN 414 (443)
Q Consensus 395 ~~~a~~~a~~~a~~i~~~l~ 414 (443)
...|..+|+.+|.+|...+.
T Consensus 425 l~~A~~~G~~aA~~i~~~lg 444 (965)
T 2gag_A 425 TASALSTGAATGAAAATAAG 444 (965)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 33677899999999998774
No 88
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=99.93 E-value=1.5e-27 Score=248.71 Aligned_cols=279 Identities=18% Similarity=0.178 Sum_probs=182.9
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-CCCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-TYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
....+||+|||||++|+++|..|++.|++|+|+|+.+.+||.|... .+ ++......
T Consensus 386 ~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~-----------------------pg~~~~~~ 442 (729)
T 1o94_A 386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAAL-----------------------PGLGEWSY 442 (729)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTS-----------------------TTCGGGHH
T ss_pred ccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccC-----------------------CChHHHHH
Confidence 3456899999999999999999999999999999999899877541 11 11112244
Q ss_pred HHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC------CccCCCCCCCC
Q 013435 110 FLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE------EVVPYIEGMDG 183 (443)
Q Consensus 110 ~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~------p~~p~~~g~~~ 183 (443)
+.+++....+.+. ..+..++.+... .. ++..++ ..+.||+||+|||.... |..|.+||.+.
T Consensus 443 ~~~~~~~~i~~~~---~~~~~~v~i~~~---~~--v~~~~~-----~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~ 509 (729)
T 1o94_A 443 HRDYRETQITKLL---KKNKESQLALGQ---KP--MTADDV-----LQYGADKVIIATGARWNTDGTNCLTHDPIPGADA 509 (729)
T ss_dssp HHHHHHHHHHHHH---HHSTTCEEECSC---CC--CCHHHH-----HTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCT
T ss_pred HHHHHHHHHHHhh---cccCCceEEEeC---eE--Eehhhc-----cccCCCEEEEcCCCCcccccccCccCCCCCCccc
Confidence 5555555444330 001111222111 11 333222 45889999999995322 56778888764
Q ss_pred CcccEeecCCCCCCCCCCCCeEEEEc--cCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchh
Q 013435 184 FRGPIFHSSSYKTGELFRDKNVLVVG--CGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPV 261 (443)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~ViG--~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~ 261 (443)
+...+++..++.......+++|+||| +|.+|+|+|..|++.|.+||++.|++ +++.... +.
T Consensus 510 ~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~--l~~~~~~---------------~~ 572 (729)
T 1o94_A 510 SLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH--LANYMHF---------------TL 572 (729)
T ss_dssp TSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC--TTHHHHH---------------TT
T ss_pred cCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc--ccccccc---------------cc
Confidence 33344554443333344678999999 99999999999999999999999887 3231100 00
Q ss_pred HHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCCcEEEc----C
Q 013435 262 RLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHAAEFI----D 335 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~v~~~----~ 335 (443)
. .....+.+++.+|+++.+ +.++..+++.+. +
T Consensus 573 ~------------------------------------------~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~ 610 (729)
T 1o94_A 573 E------------------------------------------YPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGD 610 (729)
T ss_dssp C------------------------------------------HHHHHHHHHHTTCEEECSEEEEEEETTEEEEEETTCS
T ss_pred c------------------------------------------HHHHHHHHHhCCCEEEcCcEEEEEECCeEEEEEecCC
Confidence 0 001123344556777666 666666654432 2
Q ss_pred C-cE------------------EcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC--
Q 013435 336 G-SI------------------ENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG-- 394 (443)
Q Consensus 336 g-~~------------------~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~-- 394 (443)
+ ++ +++|.||+|+|++|++ .++.+... .+| ++++|+.++||++|||+..
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~-~l~~~l~~--------~vd-~~~~t~~~~VyAiGD~~~~~~ 680 (729)
T 1o94_A 611 GSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC-TLWNELKA--------RES-EWAENDIKGIYLIGDAEAPRL 680 (729)
T ss_dssp CSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECC-HHHHHHHH--------TGG-GTGGGTCCEEEECGGGTSCCC
T ss_pred ceEEecccccccccccCCcceeeeCCEEEECCCCCCCh-HHHHHHhh--------hcc-cccccCCCCeEEEeCccchhh
Confidence 2 22 8999999999999997 45443221 244 5667889999999999864
Q ss_pred cccchHHHHHHHHHHHHhhH
Q 013435 395 LLGASIDARRISEDIEHQWN 414 (443)
Q Consensus 395 ~~~a~~~a~~~a~~i~~~l~ 414 (443)
+..|..+|+.+|.+|.+.+.
T Consensus 681 ~~~A~~~G~~aA~~i~~~l~ 700 (729)
T 1o94_A 681 IADATFTGHRVAREIEEANP 700 (729)
T ss_dssp HHHHHHHHHHHHHTTTSSCT
T ss_pred HHHHHHHHHHHHHHhhhhcc
Confidence 33688999999999987764
No 89
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=99.93 E-value=1.1e-27 Score=235.76 Aligned_cols=285 Identities=12% Similarity=0.104 Sum_probs=181.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTE--KGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~--~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
++||+|||||++|+++|..|++ .|++|+|||+++.++..... +.. .. +....+++.
T Consensus 2 ~~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~~~~---~~~----------~~---------g~~~~~~~~ 59 (430)
T 3h28_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAF---PHL----------AM---------GWRKFEDIS 59 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGH---HHH----------HH---------TCSCGGGSE
T ss_pred CCCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcCCCc---chh----------cc---------CccCHHHHH
Confidence 4789999999999999999999 68999999998865421100 000 00 000011111
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeec
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHS 191 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~ 191 (443)
..+.+.+++.+++++.+ +|+.++... . .|.+.++ .++.||+||+||| +.+..| |... .+...+.
T Consensus 60 ~~~~~~~~~~gv~~~~~-~v~~id~~~--~--~v~~~~g-----~~i~~d~liiAtG--~~~~~p---g~~~-~g~~~~~ 123 (430)
T 3h28_A 60 VPLAPLLPKFNIEFINE-KAESIDPDA--N--TVTTQSG-----KKIEYDYLVIATG--PKLVFG---AEGQ-EENSTSI 123 (430)
T ss_dssp EESTTTGGGGTEEEECS-CEEEEETTT--T--EEEETTC-----CEEECSEEEECCC--CEEECC---SBTH-HHHSCCC
T ss_pred HHHHHHHHhcCCEEEEE-EEEEEECCC--C--EEEECCC-----cEEECCEEEEcCC--cccccC---CCCC-cCCccCc
Confidence 11222344567777654 788887654 3 3666554 5799999999999 565555 3221 1111122
Q ss_pred CCCCCCCC--------CCCCeEEEEccCCCH------HHHHHHH----hhcC----CccEEEEecCCccccccccCCCcc
Q 013435 192 SSYKTGEL--------FRDKNVLVVGCGNSG------MEVSLDL----CNYN----ARPSLVVRDTVHVLPQEMIGRSTF 249 (443)
Q Consensus 192 ~~~~~~~~--------~~~~~v~ViG~G~~~------~e~a~~l----~~~g----~~Vt~i~r~~~~~lp~~~~~~~~~ 249 (443)
+...+... ..+++++|||+|+++ +|+|..+ .+.| .+|+++.+.+. +.+....
T Consensus 124 ~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~~~~G~~~E~a~~la~~l~~~g~~~~~~V~~v~~~~~-~~~~~l~----- 197 (430)
T 3h28_A 124 CTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPY-LGHFGVG----- 197 (430)
T ss_dssp SSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSS-TTCTTTT-----
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCccceEEEEecCCcc-ccccccC-----
Confidence 21111110 114567899998765 8888544 4455 46888877662 2110000
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe
Q 013435 250 GLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT 327 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~ 327 (443)
. + +.....+.+.+++.+|+++.+ |+++.
T Consensus 198 ~--------~------------------------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~v~ 227 (430)
T 3h28_A 198 G--------I------------------------------------------GASKRLVEDLFAERNIDWIANVAVKAIE 227 (430)
T ss_dssp C--------S------------------------------------------TTHHHHHHHHHHHTTCEEECSCEEEEEC
T ss_pred c--------c------------------------------------------hHHHHHHHHHHHHCCCEEEeCCEEEEEe
Confidence 0 0 001112234455678888887 88888
Q ss_pred CCcEEEcC----CcEEcccEEEEccCCCCCCCCCccC--cCcCccCCC-CcCCCCCCCCc-CCCceEEEeeccCCc----
Q 013435 328 HHAAEFID----GSIENYDAIILATGYKSNVPYWLKD--TEMFSEKDG-FPRMEFPNGWK-GAHGLYAVGFNKRGL---- 395 (443)
Q Consensus 328 ~~~v~~~~----g~~~~~D~vi~atG~~~~~~~~~~~--~~l~~~~~G-~i~~~~~~~~~-~~~~ifaiGd~~~~~---- 395 (443)
.+++.+.+ ++++++|.||+++|+.++. ++.+ .++ .+++| ++.+|. +.++ +.|+|||+|||+...
T Consensus 228 ~~~v~~~~~~~~g~~i~~D~vv~a~G~~~~~--~l~~~~~gl-~~~~G~~i~Vd~-~l~t~~~~~Ifa~GD~~~~~~~~~ 303 (430)
T 3h28_A 228 PDKVIYEDLNGNTHEVPAKFTMFMPSFQGPE--VVASAGDKV-ANPANKMVIVNR-CFQNPTYKNIFGVGVVTAIPPIEK 303 (430)
T ss_dssp SSEEEEECTTSCEEEEECSEEEEECEEECCH--HHHTTCTTT-BCTTTCCBCCCT-TSBCSSSTTEEECSTTBCCCCSSC
T ss_pred CCeEEEEecCCCceEEeeeEEEECCCCccch--hHhhccccC-cCCCCCEEecCc-cccCCCCCCEEEEEeeeccCCccC
Confidence 88888877 7789999999999999873 3443 356 46789 999994 5555 899999999997531
Q ss_pred -----------ccchHHHHHHHHHHHHhhHHH
Q 013435 396 -----------LGASIDARRISEDIEHQWNSE 416 (443)
Q Consensus 396 -----------~~a~~~a~~~a~~i~~~l~~~ 416 (443)
..|..||+.+|++|...+...
T Consensus 304 ~~~~~~~pk~~~~A~~~g~~aa~ni~~~l~g~ 335 (430)
T 3h28_A 304 TPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNN 335 (430)
T ss_dssp CSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 257789999999999998653
No 90
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=99.92 E-value=9.5e-26 Score=233.58 Aligned_cols=284 Identities=16% Similarity=0.198 Sum_probs=179.4
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
....+||+|||||++|+++|..|++.|++|+|+|+++.+||.|.... .+ +......++
T Consensus 370 ~~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~-------------~~---------~~~~~~~~~ 427 (671)
T 1ps9_A 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK-------------QI---------PGKEEFYET 427 (671)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHT-------------TS---------TTCTTHHHH
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccc-------------cC---------CCHHHHHHH
Confidence 34568999999999999999999999999999999998888764310 00 111233556
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEE-EeCEEEEccCCCCCCccCCCCCCCCCcccEe
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVY-LCQWLIVATGENAEEVVPYIEGMDGFRGPIF 189 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i-~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~ 189 (443)
..++..++++.+++++.++.|.. ..+ .||+||+||| +.|..|.+||.+. ..++
T Consensus 428 ~~~~~~~~~~~gv~~~~~~~v~~----------------------~~~~~~d~lviAtG--~~p~~~~i~G~~~--~~v~ 481 (671)
T 1ps9_A 428 LRYYRRMIEVTGVTLKLNHTVTA----------------------DQLQAFDETILASG--IVPRTPPIDGIDH--PKVL 481 (671)
T ss_dssp HHHHHHHHHHHTCEEEESCCCCS----------------------SSSCCSSEEEECCC--EEECCCCCBTTTS--TTEE
T ss_pred HHHHHHHHHHcCCEEEeCcEecH----------------------HHhhcCCEEEEccC--CCcCCCCCCCCCC--CcEe
Confidence 66777777888888877764410 123 8999999999 6888888998764 2344
Q ss_pred ecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC--CccccccccCCCccchhhhhhhhchhHHHHHH
Q 013435 190 HSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT--VHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQF 267 (443)
Q Consensus 190 ~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~--~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (443)
+.++........+++|+|||+|.+|+|+|..|++.|.+|+++...- .+-...... .... +....+
T Consensus 482 ~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~-----~~~~-~~~~~~------- 548 (671)
T 1ps9_A 482 SYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQ-----QAGG-LSPQGM------- 548 (671)
T ss_dssp EHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCC-----SGGG-BCTTCC-------
T ss_pred eHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhccccccc-----cccc-cccccc-------
Confidence 4444333344568999999999999999999999998876421000 000000000 0000 000000
Q ss_pred HHHHHHHHhcCccccCCCCCCCCCccccc-----cCC-CcccccccchhhhcCCCeEEecC--CcEEeCCcEEE-cCC--
Q 013435 268 LLLMSWLMLGDTSQFGLIRPKLGPLELKN-----VSG-KTPVLDVGTLAKIRSGNIKVCRA--IKRLTHHAAEF-IDG-- 336 (443)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~~v~~-~~g-- 336 (443)
. . .+......+.. ... ..+.......+.+++.+|+++.+ ++++.++++.+ .+|
T Consensus 549 ----------~-----~-~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~ 612 (671)
T 1ps9_A 549 ----------Q-----I-PRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGET 612 (671)
T ss_dssp ----------C-----C-CCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEE
T ss_pred ----------c-----c-CCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeE
Confidence 0 0 00000000000 000 00111111235566778999887 78888888877 677
Q ss_pred cEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCC----cccchHHHHHHHHHH
Q 013435 337 SIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRG----LLGASIDARRISEDI 409 (443)
Q Consensus 337 ~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~----~~~a~~~a~~~a~~i 409 (443)
+++++|.||+|+|++|++ .++.... . ..++||++|||... ...|..||+.+|.+|
T Consensus 613 ~~i~~D~Vi~a~G~~p~~-~l~~~l~----~-------------~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 613 QVLAVDNVVICAGQEPNR-ALAQPLI----D-------------SGKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671 (671)
T ss_dssp EEECCSEEEECCCEEECC-TTHHHHH----T-------------TTCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred EEEeCCEEEECCCccccH-HHHHHHH----h-------------cCCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence 579999999999999997 4543211 1 12589999999753 335788999888874
No 91
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=99.92 E-value=1.1e-24 Score=212.46 Aligned_cols=287 Identities=13% Similarity=0.121 Sum_probs=178.5
Q ss_pred CCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
++|+|||||++|+++|..|.+.+ .+|+|||+++.+..+... ... ... ..+.+++..
T Consensus 3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~---~~v----------~~g---------~~~~~~~~~ 60 (401)
T 3vrd_B 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMS---NEV----------IGG---------DRELASLRV 60 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTH---HHH----------HHT---------SSCGGGGEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCH---HHH----------hcC---------CCCHHHHhh
Confidence 47999999999999999999886 589999998743211000 000 000 000001100
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCccc-Eeec
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGP-IFHS 191 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~-~~~~ 191 (443)
.+. ...+.+++++.+ +|+.|+.+. .. |.+.++ .++.||+||+||| +.+..+.+||....... ..++
T Consensus 61 ~~~-~~~~~gv~~i~~-~v~~id~~~--~~--v~~~~g-----~~i~yd~LviAtG--~~~~~~~i~G~~e~~~~~~~~~ 127 (401)
T 3vrd_B 61 GYD-GLRAHGIQVVHD-SALGIDPDK--KL--VKTAGG-----AEFAYDRCVVAPG--IDLLYDKIEGYSEALAAKLPHA 127 (401)
T ss_dssp CSH-HHHHTTCEEECS-CEEEEETTT--TE--EEETTS-----CEEECSEEEECCC--EEECGGGSBTCCSGGGGTSCCC
T ss_pred CHH-HHHHCCCEEEEe-EEEEEEccC--cE--EEeccc-----ceeecceeeeccC--CccccCCccCchhhcccCccce
Confidence 011 123457777554 588998765 43 666665 6899999999999 67888888887653221 1222
Q ss_pred CCCCCCC--------CCCCCeEEEEccCCC-----------HHHHHHHHhhcC--CccEEEEecCCccccccccCCCccc
Q 013435 192 SSYKTGE--------LFRDKNVLVVGCGNS-----------GMEVSLDLCNYN--ARPSLVVRDTVHVLPQEMIGRSTFG 250 (443)
Q Consensus 192 ~~~~~~~--------~~~~~~v~ViG~G~~-----------~~e~a~~l~~~g--~~Vt~i~r~~~~~lp~~~~~~~~~~ 250 (443)
....+.. .......+|+++|.. +.+++..+...+ .+|+++.+.+... +..
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~-~~~-------- 198 (401)
T 3vrd_B 128 WKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFS-KQA-------- 198 (401)
T ss_dssp SSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCT-THH--------
T ss_pred eccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEccccccc-ccc--------
Confidence 2111110 122344555554443 345555555555 5688877666211 100
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeC
Q 013435 251 LSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTH 328 (443)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~ 328 (443)
.+.+. +.......+++.+|+++.+ +..+..
T Consensus 199 -------~~~~~-----------------------------------------~~~~~~~~l~~~gi~v~~~~~v~~v~~ 230 (401)
T 3vrd_B 199 -------QFTKG-----------------------------------------WERLYGFGTENALIEWHPGPDAAVVKT 230 (401)
T ss_dssp -------HHHHH-----------------------------------------HHHHSCTTSTTCSEEEECTTTTCEEEE
T ss_pred -------cccHH-----------------------------------------HHHHHHHHHHhcCcEEEeCceEEEEEe
Confidence 00000 0011123344667888766 554432
Q ss_pred ----CcEEEcCCcEEcccEEEEccCCCCCCCCCccCcCcCccCCCCcCCCCC-CCCcCCCceEEEeeccCCc------cc
Q 013435 329 ----HAAEFIDGSIENYDAIILATGYKSNVPYWLKDTEMFSEKDGFPRMEFP-NGWKGAHGLYAVGFNKRGL------LG 397 (443)
Q Consensus 329 ----~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~G~i~~~~~-~~~~~~~~ifaiGd~~~~~------~~ 397 (443)
..+.+.+|+++++|.|++++|.+|+ .++...++. +++|++.||.. .+.+++|||||+|||+... ..
T Consensus 231 ~~~~~~v~~~~g~~i~~D~vi~~~g~~~~--~~~~~~gl~-~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~ 307 (401)
T 3vrd_B 231 DTEAMTVETSFGETFKAAVINLIPPQRAG--KIAQSASLT-NDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYS 307 (401)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCEEEC--HHHHHTTCC-CTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHH
T ss_pred cccceEEEcCCCcEEEeeEEEEecCcCCc--hhHhhcccc-ccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHH
Confidence 2478899999999999999999998 566666774 58899999954 3468899999999987532 14
Q ss_pred chHHHHHHHHHHHHhhHHH
Q 013435 398 ASIDARRISEDIEHQWNSE 416 (443)
Q Consensus 398 a~~~a~~~a~~i~~~l~~~ 416 (443)
|..||+.+|+||...+...
T Consensus 308 A~~qa~v~A~ni~~~l~G~ 326 (401)
T 3vrd_B 308 ANSQAKVAAAAVVALLKGE 326 (401)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 6789999999999988653
No 92
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.91 E-value=2.1e-24 Score=215.55 Aligned_cols=260 Identities=15% Similarity=0.189 Sum_probs=174.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
..+||+|||||++|+++|..|++. ++|+|+|+++.+||.|....+. ... ++. ...++..
T Consensus 107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~---------~~g---------~~~--~~~~~~~ 165 (493)
T 1y56_A 107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIK---------QEG---------FNK--DSRKVVE 165 (493)
T ss_dssp EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSE---------ETT---------TTE--EHHHHHH
T ss_pred ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccc---------cCC---------CCC--CHHHHHH
Confidence 457999999999999999999999 9999999999888876542110 000 000 2344444
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
.+.+.+ +.++++++++.|.+++... ..+.+...+ .++...+.||++|+||| +.+..|.+||.+. .+ ++...
T Consensus 166 ~l~~~l-~~~v~~~~~~~v~~i~~~~--~~~~~~~~~--~~~~~~~~~d~lvlAtG--a~~~~~~~~g~~~-~g-v~~~~ 236 (493)
T 1y56_A 166 ELVGKL-NENTKIYLETSALGVFDKG--EYFLVPVVR--GDKLIEILAKRVVLATG--AIDSTMLFENNDM-PG-VFRRD 236 (493)
T ss_dssp HHHHTC-CTTEEEETTEEECCCEECS--SSEEEEEEE--TTEEEEEEESCEEECCC--EEECCCCCTTTTS-TT-EEEHH
T ss_pred HHHHHH-hcCCEEEcCCEEEEEEcCC--cEEEEEEec--CCeEEEEECCEEEECCC--CCccCCCCCCCCC-CC-EEEcH
Confidence 443333 4577778899999888776 555554432 11234799999999999 6777788888653 22 22211
Q ss_pred CCC---C-CCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHH
Q 013435 193 SYK---T-GELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFL 268 (443)
Q Consensus 193 ~~~---~-~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (443)
+.. . ....++++++|||+|.+|+| ..+.+.| |.++....
T Consensus 237 ~~~~~~~~~~~~~~~~vvViGgG~~gle--~~l~~~G--V~v~~~~~--------------------------------- 279 (493)
T 1y56_A 237 FALEVMNVWEVAPGRKVAVTGSKADEVI--QELERWG--IDYVHIPN--------------------------------- 279 (493)
T ss_dssp HHHHHHHTSCBCSCSEEEEESTTHHHHH--HHHHHHT--CEEEECSS---------------------------------
T ss_pred HHHHHHHhcccCCCCEEEEECCCHHHHH--HHHHhCC--cEEEeCCe---------------------------------
Confidence 110 0 11235689999999999999 3444444 22222111
Q ss_pred HHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhh-cCCCeEEecCCcEEeCCcEEEcCCcEEcccEEEEc
Q 013435 269 LLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKI-RSGNIKVCRAIKRLTHHAAEFIDGSIENYDAIILA 347 (443)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~v~~~~~~~v~~~~g~~~~~D~vi~a 347 (443)
+..+ .++++. .+.+.+|+++++|.||+|
T Consensus 280 ----------------------------------------v~~i~~~~~v~-----------~v~~~~g~~i~aD~Vv~a 308 (493)
T 1y56_A 280 ----------------------------------------VKRVEGNEKVE-----------RVIDMNNHEYKVDALIFA 308 (493)
T ss_dssp ----------------------------------------EEEEECSSSCC-----------EEEETTCCEEECSEEEEC
T ss_pred ----------------------------------------eEEEecCCceE-----------EEEeCCCeEEEeCEEEEC
Confidence 0000 011111 255678889999999999
Q ss_pred cCCCCCCCCCccCcCcCc--cCCCCcC-CCCCCCCcCCCceEEEeeccCC--cccchHHHHHHHHHHHHhh
Q 013435 348 TGYKSNVPYWLKDTEMFS--EKDGFPR-MEFPNGWKGAHGLYAVGFNKRG--LLGASIDARRISEDIEHQW 413 (443)
Q Consensus 348 tG~~~~~~~~~~~~~l~~--~~~G~i~-~~~~~~~~~~~~ifaiGd~~~~--~~~a~~~a~~~a~~i~~~l 413 (443)
+|+.|++ .++...++.. ++.|++. +| ++++ +.++||++|||+.. ...|..+|+.+|.+|...+
T Consensus 309 ~G~~p~~-~l~~~~g~~~~~~~~g~i~~vd-~~~~-s~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~~~l 376 (493)
T 1y56_A 309 DGRRPDI-NPITQAGGKLRFRRGYYSPVLD-EYHR-IKDGIYVAGSAVSIKPHYANYLEGKLVGAYILKEF 376 (493)
T ss_dssp CCEEECC-HHHHHTTCCEEEETTEEEECCC-TTSE-EETTEEECSTTTCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCcCc-hHHHhcCCCccccCCceeeccc-cccC-cCCCEEEEeccCCccCHHHHHHHHHHHHHHHHHHc
Confidence 9999997 5666665543 4678876 67 5555 89999999999864 3467889999999999876
No 93
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=99.91 E-value=1.2e-26 Score=228.08 Aligned_cols=285 Identities=14% Similarity=0.122 Sum_probs=169.4
Q ss_pred CCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
++|+|||||++|+++|..|.+.+ .+|+|||+++.+.- +...+.. .. +..+.+++..
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~---~p~l~~v----~~---------------g~~~~~~i~~ 60 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGF---TPAFPHL----AM---------------GWRKFEDISV 60 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEEC---GGGHHHH----HH---------------TCSCGGGSEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCcc---CccHHHH----hc---------------CCCCHHHhhh
Confidence 46999999999999999999875 79999999874310 0000000 00 0000011111
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccEeecC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPIFHSS 192 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~~~~~ 192 (443)
.+++++++.+++++.+ +|++|+.+. .. |++.++ .++.||+||+|||. ++. +++||..+. ....+
T Consensus 61 ~~~~~~~~~gv~~i~~-~v~~Id~~~--~~--V~~~~g-----~~i~YD~LViAtG~--~~~-~~i~G~~e~---~~~~~ 124 (430)
T 3hyw_A 61 PLAPLLPKFNIEFINE-KAESIDPDA--NT--VTTQSG-----KKIEYDYLVIATGP--KLV-FGAEGQEEN---STSIC 124 (430)
T ss_dssp ESTTTGGGGTEEEECS-CEEEEETTT--TE--EEETTC-----CEEECSEEEECCCC--EEE-CCSBTHHHH---SCCCS
T ss_pred cHHHHHHHCCcEEEEe-EEEEEECCC--CE--EEECCC-----CEEECCEEEEeCCC--Ccc-CCccCcccC---cCCcc
Confidence 1122344557776555 699998766 44 777765 68999999999994 443 457775431 11111
Q ss_pred CCCCCC--------CCCCCeEEEEccCCCHHH-------HHHH----HhhcC----CccEEEEecCCccccccccCCCcc
Q 013435 193 SYKTGE--------LFRDKNVLVVGCGNSGME-------VSLD----LCNYN----ARPSLVVRDTVHVLPQEMIGRSTF 249 (443)
Q Consensus 193 ~~~~~~--------~~~~~~v~ViG~G~~~~e-------~a~~----l~~~g----~~Vt~i~r~~~~~lp~~~~~~~~~ 249 (443)
...+.. ....+.++|+|++ .|+| ++.. +.+.+ .+|+++...+. ++....
T Consensus 125 ~~~~a~~~~~~l~~~~~~~~~vv~gg~-~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~--l~~~~~----- 196 (430)
T 3hyw_A 125 TAEHALETQKKLQELYANPGPVVIGAI-PGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPY--LGHFGV----- 196 (430)
T ss_dssp SHHHHHHHHHHHHHHHHSCCCEEEEEC-TTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSS--TTCTTT-----
T ss_pred cHHHHHHHHHHHHhhccCCceEEEeCC-CcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccch--hhhccc-----
Confidence 111100 0123445666655 3433 3322 23333 34566544431 111100
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHHHhcCccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEe
Q 013435 250 GLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLT 327 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~ 327 (443)
.. . +.......+.+++.+|+++.+ |++++
T Consensus 197 ~~--------~-----------------------------------------~~~~~~l~~~l~~~GV~~~~~~~v~~v~ 227 (430)
T 3hyw_A 197 GG--------I-----------------------------------------GASKRLVEDLFAERNIDWIANVAVKAIE 227 (430)
T ss_dssp TC--------S-----------------------------------------TTHHHHHHHHHHHTTCEEECSCEEEEEC
T ss_pred hh--------h-----------------------------------------HHHHHHHHHHHHhCCeEEEeCceEEEEe
Confidence 00 0 000111223455678898887 88888
Q ss_pred CCcEEEcC----CcEEcccEEEEccCCCCCCCCCccCc--CcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc------
Q 013435 328 HHAAEFID----GSIENYDAIILATGYKSNVPYWLKDT--EMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL------ 395 (443)
Q Consensus 328 ~~~v~~~~----g~~~~~D~vi~atG~~~~~~~~~~~~--~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~------ 395 (443)
.+++.+.+ ++++++|.+|+++|.+|+ .++... .+..+.+|++.+|...+.+++|+|||+|||+...
T Consensus 228 ~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~--~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~ 305 (430)
T 3hyw_A 228 PDKVIYEDLNGNTHEVPAKFTMFMPSFQGP--EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTP 305 (430)
T ss_dssp SSEEEEECTTSCEEEEECSEEEEECEEECC--HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCS
T ss_pred CCceEEEeeCCCceEeecceEEEeccCCCc--hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCc
Confidence 88887764 347999999999999998 344444 3433456789999444558999999999997421
Q ss_pred -----c----cchHHHHHHHHHHHHhhHHH
Q 013435 396 -----L----GASIDARRISEDIEHQWNSE 416 (443)
Q Consensus 396 -----~----~a~~~a~~~a~~i~~~l~~~ 416 (443)
. .|..||+.+|+||...+...
T Consensus 306 ~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~ 335 (430)
T 3hyw_A 306 IPTGVPKTGMMIEQMAMAVAHNIVNDIRNN 335 (430)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCccchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 36789999999999888653
No 94
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.1e-19 Score=170.03 Aligned_cols=153 Identities=12% Similarity=0.030 Sum_probs=103.0
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHH
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTE--KGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQ 108 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~--~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (443)
....+||+||||||+|++||++|++ .|++|+|+|+.+.+||......+ . .+ ..
T Consensus 62 ~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~---~--------------~~--------~~ 116 (326)
T 3fpz_A 62 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQ---L--------------FS--------AM 116 (326)
T ss_dssp HTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCST---T--------------CC--------CE
T ss_pred hccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCc---c--------------CC--------HH
Confidence 3456899999999999999999986 49999999999988885432110 0 00 00
Q ss_pred HHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccCCCCCCCCCcccE
Q 013435 109 QFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVPYIEGMDGFRGPI 188 (443)
Q Consensus 109 ~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~g~~~~~~~~ 188 (443)
.+......+++++++++..+. . .....+.++++++ ..+..+.++|...+.+..
T Consensus 117 ~l~~~~~~~~~e~Gv~~~~~~-----------~--------------~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~ 169 (326)
T 3fpz_A 117 VMRKPAHLFLQELEIPYEDEG-----------D--------------YVVVKHAALFIST--VLSKVLQLPNVKLFNATC 169 (326)
T ss_dssp EEETTTHHHHHHTTCCCEECS-----------S--------------EEEESCHHHHHHH--HHHHHHTSTTEEEETTEE
T ss_pred HHHHHHHHHHHHcCCEEEECC-----------c--------------ceecceeEEEEcc--hhhhccccccceeecccc
Confidence 000111233455666543221 0 3344445566666 455566777766655555
Q ss_pred eecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 189 FHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 189 ~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
...+..++.....+++++|||+|.++++.|..+...+.++++..+..
T Consensus 170 ~~~~~~~~~~~~~~~~v~viggg~~av~~a~~~~~~~~~v~i~~~~~ 216 (326)
T 3fpz_A 170 VEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCAMDPNVIELAGY 216 (326)
T ss_dssp EEEEEEESSCSSSSCEEEEEEEEEHHHHTCTTSSSCCCCEEEEESCB
T ss_pred cceeeccCCcccCCCEEEEEccCceeeehhhhhhhccCcEEEEeecc
Confidence 55555556666778999999999999999999999999999887665
No 95
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.65 E-value=2.6e-16 Score=135.35 Aligned_cols=158 Identities=15% Similarity=0.159 Sum_probs=107.3
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccc-cC-CCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccc
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEM-IG-RSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQ 281 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (443)
+|+|||+|.+|+++|..|++.|.+|+++.+++. .++... .. .+.+. .......+.
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~----------------- 59 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS-KVKGVSRVPNYPGLL-----DEPSGEELL----------------- 59 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC-TTTTCSCCCCSTTCT-----TCCCHHHHH-----------------
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC-cccCchhhhccCCCc-----CCCCHHHHH-----------------
Confidence 699999999999999999999999999999873 222110 00 00000 000011111
Q ss_pred cCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC-CcEEeCC----cEEEcCCcEEcccEEEEccCCCCCCCC
Q 013435 282 FGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA-IKRLTHH----AAEFIDGSIENYDAIILATGYKSNVPY 356 (443)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~~~~~----~v~~~~g~~~~~D~vi~atG~~~~~~~ 356 (443)
..+.+.+.+.+++++.+ ++++..+ .+.+.+| ++++|.||+|+|..|++
T Consensus 60 ------------------------~~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~-- 112 (180)
T 2ywl_A 60 ------------------------RRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTL-- 112 (180)
T ss_dssp ------------------------HHHHHHHHHTTCEEEECCCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHH--
T ss_pred ------------------------HHHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCc--
Confidence 11222333345555554 5555432 2556677 89999999999999853
Q ss_pred CccCcCcCccCCCCcCCCCCCCCcCCCceEEEeeccCCc----ccchHHHHHHHHHHHHhhH
Q 013435 357 WLKDTEMFSEKDGFPRMEFPNGWKGAHGLYAVGFNKRGL----LGASIDARRISEDIEHQWN 414 (443)
Q Consensus 357 ~~~~~~l~~~~~G~i~~~~~~~~~~~~~ifaiGd~~~~~----~~a~~~a~~~a~~i~~~l~ 414 (443)
....++..+ +|++.+| ++.+++.|+|||+|||+... ..|..+|+.+|.+|.+.++
T Consensus 113 -~~~~g~~~~-~g~i~vd-~~~~t~~~~i~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 171 (180)
T 2ywl_A 113 -PSLLGLTRR-GAYIDTD-EGGRTSYPRVYAAGVARGKVPGHAIISAGDGAYVAVHLVSDLR 171 (180)
T ss_dssp -HHHHTCCEE-TTEECCC-TTCBCSSTTEEECGGGGTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccCCCCcc-CceEEeC-CCCCcCCCCEEEeecccCcchhhHHHHHHhHHHHHHHHHHHhh
Confidence 344466666 8999999 77888999999999998643 3578899999999988765
No 96
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.63 E-value=7.9e-16 Score=149.15 Aligned_cols=132 Identities=19% Similarity=0.244 Sum_probs=88.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc---------CCCCc---eeeecCCccc----cC-----
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL---------KTYDR---LRLHLPKQFC----QL----- 92 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~---------~~~~~---~~~~~~~~~~----~~----- 92 (443)
.+||+|||||++|+++|..|++.|.+|+|+|+.+.+|+.|.. +.... .....+.... .+
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF 83 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHH
Confidence 489999999999999999999999999999999877654321 00000 0000000000 00
Q ss_pred ------CCCCCC--CCCCCCC--CHHHHHHHHHHHHHHcCCccccceeEEEEEEe----CCCCeEEEEEeecCCCcEEEE
Q 013435 93 ------PLMPFP--SNFPTYP--TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYD----HLSRLWRVKTQQGLKQEETVY 158 (443)
Q Consensus 93 ------~~~~~~--~~~~~~~--~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~----~~~~~~~v~~~~~~~~~~~~i 158 (443)
...++. ..-..|+ ...++.+.+.+.+++.++++++++.|+++..+ + +.|.|++.+ .++
T Consensus 84 ~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~--~~~~v~~~~------g~i 155 (401)
T 2gqf_A 84 ISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEK--VRFVLQVNS------TQW 155 (401)
T ss_dssp HHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSS--CCEEEEETT------EEE
T ss_pred HHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCC--CeEEEEECC------CEE
Confidence 000000 0001112 56788888888888899999999999999876 4 457777654 479
Q ss_pred EeCEEEEccCCCCCC
Q 013435 159 LCQWLIVATGENAEE 173 (443)
Q Consensus 159 ~a~~vIiAtG~~~~p 173 (443)
+||+||+|||.++.|
T Consensus 156 ~ad~VVlAtG~~s~p 170 (401)
T 2gqf_A 156 QCKNLIVATGGLSMP 170 (401)
T ss_dssp EESEEEECCCCSSCG
T ss_pred ECCEEEECCCCccCC
Confidence 999999999987654
No 97
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=99.55 E-value=2.7e-15 Score=148.64 Aligned_cols=193 Identities=14% Similarity=0.068 Sum_probs=104.3
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccCC----C---Cceee-------------e---------
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--WQLKT----Y---DRLRL-------------H--------- 84 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--w~~~~----~---~~~~~-------------~--------- 84 (443)
||+|||||++|+++|..|++.|.+|+|+|+. ..+|. |.+.. . ..... +
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~ 79 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS 79 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 7999999999999999999999999999998 44442 11110 0 00000 0
Q ss_pred -cCCc---c--ccCCCC---------CCCCC-CCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeE-EEEE
Q 013435 85 -LPKQ---F--CQLPLM---------PFPSN-FPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLW-RVKT 147 (443)
Q Consensus 85 -~~~~---~--~~~~~~---------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-~v~~ 147 (443)
.+.. + ..+++. .++.. +....+...+...+.+.+++.+++++.++.| ++..++ +.+ -+..
T Consensus 80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~--~~v~Gv~v 156 (472)
T 2e5v_A 80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKD--GKVTGFVT 156 (472)
T ss_dssp HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEET--TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeC--CEEEEEEE
Confidence 0000 0 001100 00000 0011245677888888778889999999999 998765 432 1233
Q ss_pred eecCCCcEEEEEeCEEEEccCCCCCCccCCCC-CCCCCcccEeecC-----CCCCCCCCCCC-eEEEEccCCCHHHHHHH
Q 013435 148 QQGLKQEETVYLCQWLIVATGENAEEVVPYIE-GMDGFRGPIFHSS-----SYKTGELFRDK-NVLVVGCGNSGMEVSLD 220 (443)
Q Consensus 148 ~~~~~~~~~~i~a~~vIiAtG~~~~p~~p~~~-g~~~~~~~~~~~~-----~~~~~~~~~~~-~v~ViG~G~~~~e~a~~ 220 (443)
... ...+.||.||+|||.++. .+..+ +.....+..+..+ ...+....... .++++|+| +++++..
T Consensus 157 ~~~----~g~~~a~~VVlAtGg~~~--~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~ 228 (472)
T 2e5v_A 157 EKR----GLVEDVDKLVLATGGYSY--LYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTET 228 (472)
T ss_dssp TTT----EEECCCSEEEECCCCCGG--GSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTH
T ss_pred EeC----CCeEEeeeEEECCCCCcc--cCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehh
Confidence 210 145779999999996543 33221 1111122111100 01111111112 23455766 7887777
Q ss_pred HhhcCCccEEEEecCCcccccc
Q 013435 221 LCNYNARPSLVVRDTVHVLPQE 242 (443)
Q Consensus 221 l~~~g~~Vt~i~r~~~~~lp~~ 242 (443)
+...|..+ +..+.. ++++..
T Consensus 229 ~~~~G~~~-v~~~g~-rf~~~~ 248 (472)
T 2e5v_A 229 LRGEGAQI-INENGE-RFLFNY 248 (472)
T ss_dssp HHHTTCEE-EETTCC-CGGGGT
T ss_pred hcCCceEE-ECCCCC-CCCccC
Confidence 77777666 443433 565543
No 98
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=99.50 E-value=9.6e-14 Score=124.30 Aligned_cols=125 Identities=20% Similarity=0.117 Sum_probs=82.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
.+||+|||||++|+++|..|++.|.+++|+|+.....|.|......... .......+. + ...+.+..+..+
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~--~~~~~~~~~-----d--~~g~~~~~~~~~ 73 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFP--PGSLLERAY-----D--PKDERVWAFHAR 73 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCC--TTCHHHHHC-----C--TTCCCHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccc--hhhHHhhhc-----c--CCCCCHHHHHHH
Confidence 5899999999999999999999999999999974332333221110000 000000000 0 001156788888
Q ss_pred HHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCc
Q 013435 114 LETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 114 l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
+.+.+++. ++.++ +++|+++..+++ ..+.|.+.++ .+++||+||+|+|.++...
T Consensus 74 l~~~~~~~~gv~i~-~~~v~~i~~~~~-~v~~v~~~~g-----~~i~a~~VV~A~G~~s~~~ 128 (232)
T 2cul_A 74 AKYLLEGLRPLHLF-QATATGLLLEGN-RVVGVRTWEG-----PPARGEKVVLAVGSFLGAR 128 (232)
T ss_dssp HHHHHHTCTTEEEE-ECCEEEEEEETT-EEEEEEETTS-----CCEECSEEEECCTTCSSCE
T ss_pred HHHHHHcCCCcEEE-EeEEEEEEEeCC-EEEEEEECCC-----CEEECCEEEECCCCChhhc
Confidence 88888886 88877 568999988762 2245666554 4799999999999755433
No 99
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.31 E-value=7e-12 Score=107.42 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=81.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
+|||+|||||++|+.+|..|.+.|.+|+++|+.+..-. .. .....++. ++......++.++
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~---~~----------~~~~~~~~------~~~~~~~~~~~~~ 61 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVK---GV----------SRVPNYPG------LLDEPSGEELLRR 61 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTT---TC----------SCCCCSTT------CTTCCCHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccc---Cc----------hhhhccCC------CcCCCCHHHHHHH
Confidence 47899999999999999999999999999999863211 00 00000111 1112457889999
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~ 170 (443)
+.+.+++.+++++.+ +|++++..+ +.+.|++.+ .++++|.||+|+|..
T Consensus 62 l~~~~~~~gv~v~~~-~v~~i~~~~--~~~~v~~~~------g~i~ad~vI~A~G~~ 109 (180)
T 2ywl_A 62 LEAHARRYGAEVRPG-VVKGVRDMG--GVFEVETEE------GVEKAERLLLCTHKD 109 (180)
T ss_dssp HHHHHHHTTCEEEEC-CCCEEEECS--SSEEEECSS------CEEEEEEEEECCTTC
T ss_pred HHHHHHHcCCEEEeC-EEEEEEEcC--CEEEEEECC------CEEEECEEEECCCCC
Confidence 999999999999999 899998876 557777654 279999999999953
No 100
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=99.31 E-value=1.3e-11 Score=120.02 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=90.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC------------CCCceeeecCCccc----cC----
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK------------TYDRLRLHLPKQFC----QL---- 92 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~------------~~~~~~~~~~~~~~----~~---- 92 (443)
..+||+|||||++|+++|..|++.|.+|+|+|+.+.+|+.+... ....+....+.... .+
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQD 105 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHH
Confidence 35899999999999999999999999999999999877543110 00000000000000 00
Q ss_pred -------CCCCCCC-----CCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEe
Q 013435 93 -------PLMPFPS-----NFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLC 160 (443)
Q Consensus 93 -------~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a 160 (443)
...++.. .++ ......+.+.+.+.+.+.+++++++++|+++..++ +.|.|.+.+ .+++|
T Consensus 106 ~~~~~~~~Gi~~~~~~~g~~~~-~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~--~~~~V~~~~------g~i~a 176 (417)
T 3v76_A 106 FVALVERHGIGWHEKTLGQLFC-DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTA--SGFRVTTSA------GTVDA 176 (417)
T ss_dssp HHHHHHHTTCCEEECSTTEEEE-SSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEET--TEEEEEETT------EEEEE
T ss_pred HHHHHHHcCCCcEEeeCCEEee-CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CEEEEEECC------cEEEe
Confidence 0000000 001 12567888899998888999999999999999877 678887765 48999
Q ss_pred CEEEEccCCCCCCc
Q 013435 161 QWLIVATGENAEEV 174 (443)
Q Consensus 161 ~~vIiAtG~~~~p~ 174 (443)
|+||+|+|.++.|.
T Consensus 177 d~VIlAtG~~S~p~ 190 (417)
T 3v76_A 177 ASLVVASGGKSIPK 190 (417)
T ss_dssp SEEEECCCCSSCGG
T ss_pred eEEEECCCCccCCC
Confidence 99999999876543
No 101
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=99.23 E-value=4.3e-11 Score=115.90 Aligned_cols=134 Identities=17% Similarity=0.174 Sum_probs=89.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC------------CCCc----------eeeecCCcc--
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK------------TYDR----------LRLHLPKQF-- 89 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~------------~~~~----------~~~~~~~~~-- 89 (443)
.+||+|||||++|+++|..|++.|.+|+|+|+.+..|+.+... ..+. .....+...
T Consensus 4 ~~dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (397)
T 3cgv_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP 83 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCcccccccCHHHHHHcCCCCChHHhhhhcceEEEEcCCCCEE
Confidence 3799999999999999999999999999999988665422211 0000 000000000
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEEeecCCCcEEEEEeCEEEEccC
Q 013435 90 CQLPLMPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKTQQGLKQEETVYLCQWLIVATG 168 (443)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~i~a~~vIiAtG 168 (443)
..+..............+..+...+.+.+.+.|++++.+++|+++...+ +.+. |++.+. ++..+++||.||.|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~--~~~~~~~a~~vV~A~G 159 (397)
T 3cgv_A 84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKEN--GKVAGAKIRHN--NEIVDVRAKMVIAADG 159 (397)
T ss_dssp EEEC-----CCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEET--TEEEEEEEEET--TEEEEEEEEEEEECCC
T ss_pred EEEeccccCCceeEEEeHHHHHHHHHHHHHhCCCEEEECCEEEEEEEeC--CEEEEEEEEEC--CeEEEEEcCEEEECCC
Confidence 0010000001111124678888999998888899999999999999876 6665 666432 1227899999999999
Q ss_pred CCC
Q 013435 169 ENA 171 (443)
Q Consensus 169 ~~~ 171 (443)
.++
T Consensus 160 ~~s 162 (397)
T 3cgv_A 160 FES 162 (397)
T ss_dssp TTC
T ss_pred cch
Confidence 866
No 102
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=99.22 E-value=1.6e-11 Score=123.67 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=101.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCcccccCCCCcee-------eecCCc---------cccCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN-CIASLWQLKTYDRLR-------LHLPKQ---------FCQLPLM 95 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~~~~~~~~-------~~~~~~---------~~~~~~~ 95 (443)
..|||+|||||++|+++|..|++.|.+|+|+|+.. .+|...+........ +..... ..++...
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l 106 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRIL 106 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEE
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhh
Confidence 45899999999999999999999999999999974 343211110000000 000000 0000000
Q ss_pred ---CCCCCC--CCCCCHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 96 ---PFPSNF--PTYPTKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 96 ---~~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
..+... ........+...+.+.+++ .++.+ +++.|+.+..+++ ..+.|.+.++ ..+.||.||+|||.
T Consensus 107 ~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~g-~V~GV~t~dG-----~~I~Ad~VVLATGt 179 (651)
T 3ces_A 107 NASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI-FQQAVEDLIVEND-RVVGAVTQMG-----LKFRAKAVVLTVGT 179 (651)
T ss_dssp STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEESSS-BEEEEEETTS-----EEEEEEEEEECCST
T ss_pred hcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEecCC-EEEEEEECCC-----CEEECCEEEEcCCC
Confidence 000000 0012456788888888877 58887 5678999987652 3345666554 68999999999996
Q ss_pred CCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEE
Q 013435 170 NAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVV 232 (443)
Q Consensus 170 ~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~ 232 (443)
++ ..+.++|...+ .+.+ +| |.++++++..|.+.|.+|+.+.
T Consensus 180 ~s--~~~~i~G~~~~----------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~ 220 (651)
T 3ces_A 180 FL--DGKIHIGLDNY----------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK 220 (651)
T ss_dssp TT--CCEEECC---------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred Cc--cCccccCcccC----------------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence 44 34456664431 1222 56 8899999999999999998884
No 103
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=99.21 E-value=7.9e-11 Score=113.78 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=86.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccc--cCCC--------------------CceeeecCCcccc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQ--LKTY--------------------DRLRLHLPKQFCQ 91 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~--~~~~--------------------~~~~~~~~~~~~~ 91 (443)
.|||+||||||+|+++|..|+++|++|+|+|+.+.+|.... .... .+..+..+.....
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP 83 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceE
Confidence 38999999999999999999999999999999876543110 0000 0011111100000
Q ss_pred CCC-CCCCCCCCC-CCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 92 LPL-MPFPSNFPT-YPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 92 ~~~-~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
... ........+ ...+..+...+.+.+.+.|+++++++.|+++..++ +......... .++..+++||+||.|+|.
T Consensus 84 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~--~~~~~v~~~~-~~~~~~~~a~~vIgAdG~ 160 (397)
T 3oz2_A 84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKEN--GKVAGAKIRH-NNEIVDVRAKMVIAADGF 160 (397)
T ss_dssp EEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEET--TEEEEEEEEE-TTEEEEEEEEEEEECCCT
T ss_pred eeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeecc--ceeeeeeecc-cccceEEEEeEEEeCCcc
Confidence 000 000000011 24688899999999999999999999999988876 4433222211 223468999999999998
Q ss_pred CCC
Q 013435 170 NAE 172 (443)
Q Consensus 170 ~~~ 172 (443)
+|.
T Consensus 161 ~S~ 163 (397)
T 3oz2_A 161 ESE 163 (397)
T ss_dssp TCH
T ss_pred ccH
Confidence 663
No 104
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.20 E-value=1.3e-10 Score=109.74 Aligned_cols=131 Identities=16% Similarity=0.211 Sum_probs=80.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCcc------------------------
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQF------------------------ 89 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~------------------------ 89 (443)
.+||+|||||++|+++|..|++.|.+|+|+|+.+..||.+..........+.....
T Consensus 2 ~~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T 1yvv_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATAVKQWQAQGHVAEW 81 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHHHHHHHHHHHHTSEEEE
T ss_pred CceEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCcccceeEecCCCeEecCCCeEecCCHHHHHHHHHHHhCCCeeec
Confidence 57999999999999999999999999999999988887654322211111110000
Q ss_pred ----ccCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCE
Q 013435 90 ----CQLPLMP---FPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQW 162 (443)
Q Consensus 90 ----~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~ 162 (443)
..+.... .......+.....+....+..++ +++++++++|++++..+ +.|.|++.++ . ...+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--g~~i~~~~~v~~i~~~~--~~~~v~~~~g---~-~~~~a~~ 153 (336)
T 1yvv_A 82 TPLLYNFHAGRLSPSPDEQVRWVGKPGMSAITRAMRG--DMPVSFSCRITEVFRGE--EHWNLLDAEG---Q-NHGPFSH 153 (336)
T ss_dssp CCCEEEESSSBCCCCCTTSCEEEESSCTHHHHHHHHT--TCCEECSCCEEEEEECS--SCEEEEETTS---C-EEEEESE
T ss_pred cccceeccCcccccCCCCCccEEcCccHHHHHHHHHc--cCcEEecCEEEEEEEeC--CEEEEEeCCC---c-CccccCE
Confidence 0000000 00000011111112222222222 78899999999999877 6788887654 1 3345999
Q ss_pred EEEccCCCCC
Q 013435 163 LIVATGENAE 172 (443)
Q Consensus 163 vIiAtG~~~~ 172 (443)
||+|+|..+.
T Consensus 154 vV~a~g~~~~ 163 (336)
T 1yvv_A 154 VIIATPAPQA 163 (336)
T ss_dssp EEECSCHHHH
T ss_pred EEEcCCHHHH
Confidence 9999997543
No 105
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=99.18 E-value=3.6e-11 Score=116.97 Aligned_cols=137 Identities=20% Similarity=0.241 Sum_probs=86.6
Q ss_pred HhhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc------ccc------------------CCCCceee
Q 013435 28 AARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL------WQL------------------KTYDRLRL 83 (443)
Q Consensus 28 ~~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~------w~~------------------~~~~~~~~ 83 (443)
++...+.+||+|||||++|+++|..|+++|++|+|+|+.+..... +.. .....+..
T Consensus 17 ~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~ 96 (407)
T 3rp8_A 17 NLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAY 96 (407)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEE
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEE
Confidence 344566789999999999999999999999999999998754311 000 00011111
Q ss_pred ecCC---ccccCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEE
Q 013435 84 HLPK---QFCQLPLMPFP---SNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETV 157 (443)
Q Consensus 84 ~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 157 (443)
.... ....++..... ........+..+...+.+.+.+ +.++++++|++++..+ +.+.|++.++ .+
T Consensus 97 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~ 167 (407)
T 3rp8_A 97 RDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDA--DGVTVWFTDG-----SS 167 (407)
T ss_dssp EETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEET--TEEEEEETTS-----CE
T ss_pred EECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecC--CcEEEEEcCC-----CE
Confidence 1000 00000000000 0011123677888888887766 6788999999999887 6788888775 58
Q ss_pred EEeCEEEEccCCCCCC
Q 013435 158 YLCQWLIVATGENAEE 173 (443)
Q Consensus 158 i~a~~vIiAtG~~~~p 173 (443)
++||+||.|+|.+|.-
T Consensus 168 ~~a~~vV~AdG~~S~v 183 (407)
T 3rp8_A 168 ASGDLLIAADGSHSAL 183 (407)
T ss_dssp EEESEEEECCCTTCSS
T ss_pred EeeCEEEECCCcChHH
Confidence 9999999999987653
No 106
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=99.18 E-value=5.5e-11 Score=117.04 Aligned_cols=141 Identities=23% Similarity=0.344 Sum_probs=89.0
Q ss_pred hhHhhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC-----CCC------ceeeecCC--cc---
Q 013435 26 ISAARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK-----TYD------RLRLHLPK--QF--- 89 (443)
Q Consensus 26 ~~~~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-----~~~------~~~~~~~~--~~--- 89 (443)
++.....+.+||+|||||++|+++|..|++.|.+|+|+|+.+.+|+..... .+. .+...... .+
T Consensus 18 m~~~~~~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (447)
T 2i0z_A 18 LYFQSNAMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYS 97 (447)
T ss_dssp -------CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHH
T ss_pred cCCCCccCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHH
Confidence 444455677999999999999999999999999999999988766421100 000 00000000 00
Q ss_pred --ccC-----------CCCCCCC-----CCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCe-EEEEEeec
Q 013435 90 --CQL-----------PLMPFPS-----NFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRL-WRVKTQQG 150 (443)
Q Consensus 90 --~~~-----------~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~-~~v~~~~~ 150 (443)
..+ ...++.. .++.......+.+.+.+.+.+.+++++++++|+++..++ +. +.|++.++
T Consensus 98 ~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~--~~v~~V~~~~G 175 (447)
T 2i0z_A 98 AFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN--GQTKAVILQTG 175 (447)
T ss_dssp HHHHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTC
T ss_pred HHHhcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC--CcEEEEEECCC
Confidence 000 0000000 001111467888888888888999999999999998765 44 77777654
Q ss_pred CCCcEEEEEeCEEEEccCCCCCC
Q 013435 151 LKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 151 ~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
..++||.||+|+|.++.|
T Consensus 176 -----~~i~Ad~VVlAtGg~s~~ 193 (447)
T 2i0z_A 176 -----EVLETNHVVIAVGGKSVP 193 (447)
T ss_dssp -----CEEECSCEEECCCCSSSG
T ss_pred -----CEEECCEEEECCCCCcCC
Confidence 469999999999987643
No 107
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=99.18 E-value=1.7e-10 Score=116.61 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=87.4
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCC--------------CCce---eeecCCc-c----
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKT--------------YDRL---RLHLPKQ-F---- 89 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~--------------~~~~---~~~~~~~-~---- 89 (443)
.+.+||+|||||++|+++|..|++.|++|+|||+.+......+... ++.+ ....... +
T Consensus 47 ~~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 126 (570)
T 3fmw_A 47 ALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIF 126 (570)
T ss_dssp ----CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCcc
Confidence 4678999999999999999999999999999999775432111100 0000 0000000 0
Q ss_pred ---ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEc
Q 013435 90 ---CQLPLMPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVA 166 (443)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiA 166 (443)
..+.................+...+.+.+.+.+++++++++|++++.++ +.+.|++... . +..+++||+||.|
T Consensus 127 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~--~~v~v~~~~~-~-G~~~~~a~~vV~A 202 (570)
T 3fmw_A 127 TQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDA--EAVEVTVAGP-S-GPYPVRARYGVGC 202 (570)
T ss_dssp TTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCS--SCEEEEEEET-T-EEEEEEESEEEEC
T ss_pred cccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CeEEEEEEeC-C-CcEEEEeCEEEEc
Confidence 0000000011111235788899999998888899999999999998876 5677776431 1 1158999999999
Q ss_pred cCCCCC
Q 013435 167 TGENAE 172 (443)
Q Consensus 167 tG~~~~ 172 (443)
+|.+|.
T Consensus 203 DG~~S~ 208 (570)
T 3fmw_A 203 DGGRST 208 (570)
T ss_dssp SCSSCH
T ss_pred CCCCch
Confidence 998763
No 108
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=99.17 E-value=1.8e-11 Score=122.78 Aligned_cols=173 Identities=13% Similarity=0.067 Sum_probs=108.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCcccccCCCCcee---e----e-cCC--------ccccCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN-CIASLWQLKTYDRLR---L----H-LPK--------QFCQLPLM 95 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~~~~~~~~---~----~-~~~--------~~~~~~~~ 95 (443)
..|||+|||||++|+++|..|++.|.+|+|+|+.. .+|...+.....+.. + . ... ...++...
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l 105 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKML 105 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeec
Confidence 46899999999999999999999999999999974 344311110000000 0 0 000 00000000
Q ss_pred C---CCCCC--CCCCCHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 96 P---FPSNF--PTYPTKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 96 ~---~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
. -+... ........+...+.+.+++ .++++ +++.|+++..+++ ..+.|.+.++ ..+.|+.||+|||.
T Consensus 106 ~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g-~V~GV~t~dG-----~~i~AdaVVLATG~ 178 (637)
T 2zxi_A 106 NTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKNN-QVVGVRTNLG-----VEYKTKAVVVTTGT 178 (637)
T ss_dssp STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESSS-BEEEEEETTS-----CEEECSEEEECCTT
T ss_pred ccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecCC-EEEEEEECCC-----cEEEeCEEEEccCC
Confidence 0 00000 0012467788888888877 48887 5678999987652 2334666654 57999999999995
Q ss_pred CCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEec
Q 013435 170 NAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRD 234 (443)
Q Consensus 170 ~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~ 234 (443)
.+..+.++|...+ . ..+ .|+.++++++..|.+.|.+++.+.+.
T Consensus 179 --~s~~~~~~G~~~~-----~-----------~Gr----~G~~~A~~la~~L~~lG~~v~~l~tg 221 (637)
T 2zxi_A 179 --FLNGVIYIGDKMI-----P-----------GGR----LGEPRSEGLSDFYRRFDFPLIRFKTG 221 (637)
T ss_dssp --CBTCEEEETTEEE-----E-----------CSB----TTBCCBCTHHHHHHHTTCCCEEEEEE
T ss_pred --CccCceeccceec-----C-----------CCC----CCchhHHHHHHHHHhcCCceEEecCC
Confidence 4444456664421 1 112 23678899999999999999887654
No 109
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=99.16 E-value=2.4e-10 Score=113.92 Aligned_cols=139 Identities=17% Similarity=0.143 Sum_probs=91.9
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc--------------CCCCceeeecCCccccCCCC
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL--------------KTYDRLRLHLPKQFCQLPLM 95 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--------------~~~~~~~~~~~~~~~~~~~~ 95 (443)
...+.+||+||||||+|+++|..|++.|++|+|+|+.+..+...+. ...+.+..........+...
T Consensus 7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 86 (500)
T 2qa1_A 7 HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGL 86 (500)
T ss_dssp -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTE
T ss_pred CccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccce
Confidence 4466789999999999999999999999999999998755321110 00000000000000000000
Q ss_pred -----CCCCCC--CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccC
Q 013435 96 -----PFPSNF--PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATG 168 (443)
Q Consensus 96 -----~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG 168 (443)
.....+ .....+..+...+.+.+.+.+++++++++|++++.++ +.++|++.++. + ..+++||+||.|+|
T Consensus 87 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~~~-g-~~~~~a~~vVgADG 162 (500)
T 2qa1_A 87 PIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDG--AGVTVEVRGPE-G-KHTLRAAYLVGCDG 162 (500)
T ss_dssp EEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEET--TEEEEEEEETT-E-EEEEEESEEEECCC
T ss_pred ecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcC--CeEEEEEEcCC-C-CEEEEeCEEEECCC
Confidence 000000 1123578888899998888899999999999999887 67778777652 2 35899999999999
Q ss_pred CCCC
Q 013435 169 ENAE 172 (443)
Q Consensus 169 ~~~~ 172 (443)
.+|.
T Consensus 163 ~~S~ 166 (500)
T 2qa1_A 163 GRSS 166 (500)
T ss_dssp TTCH
T ss_pred cchH
Confidence 8774
No 110
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=99.15 E-value=2.3e-10 Score=111.73 Aligned_cols=135 Identities=14% Similarity=0.164 Sum_probs=87.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC----CcccccCCC--------------------CceeeecCCcc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI----ASLWQLKTY--------------------DRLRLHLPKQF 89 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~----gg~w~~~~~--------------------~~~~~~~~~~~ 89 (443)
.+||+|||||++|+++|..|++.|.+|+|+|+.+.. |........ ...........
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 84 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEI 84 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCee
Confidence 379999999999999999999999999999998632 221111000 00111111111
Q ss_pred ccCCCCCC--C-CCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEc
Q 013435 90 CQLPLMPF--P-SNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVA 166 (443)
Q Consensus 90 ~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiA 166 (443)
..+..... . ........+..+...+.+.+.+.|++++++++|++++..+ +.+.+..... .++..+++||.||.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~~~v~v~~~-~g~~~~~~a~~vV~A 161 (421)
T 3nix_A 85 ADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFG--TDSVTTIEDI-NGNKREIEARFIIDA 161 (421)
T ss_dssp EEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEET--TEEEEEEEET-TSCEEEEEEEEEEEC
T ss_pred EEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcC-CCCEEEEEcCEEEEC
Confidence 11111100 0 0111235788999999998888899999999999999876 4444444321 223358999999999
Q ss_pred cCCCC
Q 013435 167 TGENA 171 (443)
Q Consensus 167 tG~~~ 171 (443)
+|.++
T Consensus 162 ~G~~s 166 (421)
T 3nix_A 162 SGYGR 166 (421)
T ss_dssp CGGGC
T ss_pred CCCch
Confidence 99755
No 111
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=99.14 E-value=4.1e-11 Score=113.72 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=83.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHH---cCCCEEEEecCCCCCcccccCC---CCceeeecCCccc-----------------
Q 013435 34 VPGPVIVGAGPSGLATAACLTE---KGVPSLILERANCIASLWQLKT---YDRLRLHLPKQFC----------------- 90 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~---~g~~v~iie~~~~~gg~w~~~~---~~~~~~~~~~~~~----------------- 90 (443)
|+||+|||||++|+++|+.|++ .|++|+|+|+.+..||.|.... +.....+....+.
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~ 80 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL 80 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH
Confidence 3689999999999999999999 8999999999998888654321 1111111111110
Q ss_pred -------cCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEE
Q 013435 91 -------QLPL----MPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYL 159 (443)
Q Consensus 91 -------~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~ 159 (443)
.+.. ....+....+.....+..+.+.++++.+++++++++|++|+..+ +.|.|++.++ ..++
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~--~~~~v~~~~g-----~~~~ 153 (342)
T 3qj4_A 81 LAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRD--DKWEVSKQTG-----SPEQ 153 (342)
T ss_dssp HHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECS--SSEEEEESSS-----CCEE
T ss_pred HhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcC--CEEEEEECCC-----CEEE
Confidence 0000 00000001111122233444555555688999999999999877 6788888765 4589
Q ss_pred eCEEEEccCC
Q 013435 160 CQWLIVATGE 169 (443)
Q Consensus 160 a~~vIiAtG~ 169 (443)
||.||+|+..
T Consensus 154 ad~vV~A~p~ 163 (342)
T 3qj4_A 154 FDLIVLTMPV 163 (342)
T ss_dssp ESEEEECSCH
T ss_pred cCEEEECCCH
Confidence 9999999984
No 112
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=99.14 E-value=2.6e-10 Score=113.60 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=91.2
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc--------------CCCCceeeecCCccccC---
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL--------------KTYDRLRLHLPKQFCQL--- 92 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--------------~~~~~~~~~~~~~~~~~--- 92 (443)
...+.+||+||||||+|+++|..|+++|++|+|+|+.+..+...+. ...+.+.-..+.....+
T Consensus 8 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 87 (499)
T 2qa2_A 8 HHRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGR 87 (499)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTE
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecce
Confidence 3456789999999999999999999999999999997755321111 00000000000000000
Q ss_pred --CCCCCCCCC--CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccC
Q 013435 93 --PLMPFPSNF--PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATG 168 (443)
Q Consensus 93 --~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG 168 (443)
......... ....++..+...+.+.+.+.+++++++++|++++.++ +.++|++.++. + ..+++||+||.|+|
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~~~-g-~~~~~a~~vVgADG 163 (499)
T 2qa2_A 88 PVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEG--DHVVVEVEGPD-G-PRSLTTRYVVGCDG 163 (499)
T ss_dssp EEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECS--SCEEEEEECSS-C-EEEEEEEEEEECCC
T ss_pred ecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCC-C-cEEEEeCEEEEccC
Confidence 000000011 1123578889999998888899999999999999877 56777777643 2 36899999999999
Q ss_pred CCCC
Q 013435 169 ENAE 172 (443)
Q Consensus 169 ~~~~ 172 (443)
.+|.
T Consensus 164 ~~S~ 167 (499)
T 2qa2_A 164 GRST 167 (499)
T ss_dssp TTCH
T ss_pred cccH
Confidence 8774
No 113
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=99.13 E-value=3.3e-10 Score=114.74 Aligned_cols=135 Identities=14% Similarity=0.130 Sum_probs=88.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCC------------------------ceeeecCCc-
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYD------------------------RLRLHLPKQ- 88 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~------------------------~~~~~~~~~- 88 (443)
.+||+|||||++|+++|..|++.|++|+|+|+.+..+........+ .........
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 102 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ 102 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence 5899999999999999999999999999999986432110000000 000000000
Q ss_pred ---cccCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCE
Q 013435 89 ---FCQLPLMP---FPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQW 162 (443)
Q Consensus 89 ---~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~ 162 (443)
...+.... +.........+..+...+.+.+.+.|++++++++|+++...++ ..+.|++.+ +++..+++||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g-~~~~V~~~~--~G~~~~i~Adl 179 (591)
T 3i3l_A 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDP-DRVVLTVRR--GGESVTVESDF 179 (591)
T ss_dssp CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCST-TCEEEEEEE--TTEEEEEEESE
T ss_pred ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CEEEEEEec--CCceEEEEcCE
Confidence 00000000 0001112346788999999999889999999999999987632 567777764 22346899999
Q ss_pred EEEccCCCC
Q 013435 163 LIVATGENA 171 (443)
Q Consensus 163 vIiAtG~~~ 171 (443)
||.|+|.++
T Consensus 180 VV~AdG~~S 188 (591)
T 3i3l_A 180 VIDAGGSGG 188 (591)
T ss_dssp EEECCGGGC
T ss_pred EEECCCCcc
Confidence 999999765
No 114
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=99.13 E-value=4.9e-11 Score=118.78 Aligned_cols=141 Identities=17% Similarity=0.125 Sum_probs=89.5
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCce-eeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRL-RLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
...+||+|||||++|+++|..|++.|.+|+|||+.+.+|+.......+.. ............ ..+...........++
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~l 168 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFY-GRFCTGTLDHISIRQL 168 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHC-TTTTCTTCCEEEHHHH
T ss_pred cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCcccc-ccccccccccCCHHHH
Confidence 45789999999999999999999999999999998877643111111100 000000000000 0000000011346788
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeC-CCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDH-LSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
...+.+.+.+.+++++++++|+++...+ +...|.|++.+..+++..+++||+||+|+|..+.+
T Consensus 169 ~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~ 232 (497)
T 2bry_A 169 QLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP 232 (497)
T ss_dssp HHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence 8899888888899999999999998742 22456677632101122468999999999976654
No 115
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=99.11 E-value=3.1e-10 Score=113.34 Aligned_cols=137 Identities=20% Similarity=0.342 Sum_probs=87.4
Q ss_pred hhhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------cccccCCCC----------c--------eee
Q 013435 29 ARRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIA-------SLWQLKTYD----------R--------LRL 83 (443)
Q Consensus 29 ~~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~g-------g~w~~~~~~----------~--------~~~ 83 (443)
++....+||+|||||++|+++|+.|++.|++|+|+|+.+.++ +.|...... + +..
T Consensus 102 ~~~~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~ 181 (549)
T 3nlc_A 102 APENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYS 181 (549)
T ss_dssp CCTTCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCC
T ss_pred CccCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEE
Confidence 344566899999999999999999999999999999987542 223221100 0 000
Q ss_pred ecCCc-c-----c-cCCCCCCCC-----CCC--CCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEee
Q 013435 84 HLPKQ-F-----C-QLPLMPFPS-----NFP--TYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQ 149 (443)
Q Consensus 84 ~~~~~-~-----~-~~~~~~~~~-----~~~--~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~ 149 (443)
..... . . .+.....+. ..+ +......+...+.+.+.+.|++++++++|+++..+++ ..+.|++.+
T Consensus 182 ~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~-~v~gV~l~~ 260 (549)
T 3nlc_A 182 QVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDG-QITGVTLSN 260 (549)
T ss_dssp CSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSS-BEEEEEETT
T ss_pred EeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCC-EEEEEEECC
Confidence 00000 0 0 000000000 000 0012366777788888888999999999999988762 344577766
Q ss_pred cCCCcEEEEEeCEEEEccCCCC
Q 013435 150 GLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 150 ~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
+ .++.||.||+|+|.++
T Consensus 261 G-----~~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 261 G-----EEIKSRHVVLAVGHSA 277 (549)
T ss_dssp S-----CEEECSCEEECCCTTC
T ss_pred C-----CEEECCEEEECCCCCh
Confidence 5 5799999999999865
No 116
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=99.10 E-value=5.5e-10 Score=112.58 Aligned_cols=136 Identities=17% Similarity=0.122 Sum_probs=91.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCC------------------------CCce------e
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKT------------------------YDRL------R 82 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~------------------------~~~~------~ 82 (443)
..+||+|||||++|+++|..|+++|.+|+|||+.+..+...+... .... .
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 83 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRL 83 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEE
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeE
Confidence 347999999999999999999999999999999875432111100 0000 0
Q ss_pred eec--CCccc----cCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCC----eEEEEE
Q 013435 83 LHL--PKQFC----QLPL-----MPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSR----LWRVKT 147 (443)
Q Consensus 83 ~~~--~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~----~~~v~~ 147 (443)
... ..... .+.. ...........++..+...+.+.+.+.+++++++++|++++.++ + .+.+++
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~~~~~v~v~~ 161 (535)
T 3ihg_A 84 AESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHD--DDAGAGVTARL 161 (535)
T ss_dssp ESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEEC--GGGCSEEEEEE
T ss_pred EeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECC--CCccccEEEEE
Confidence 000 00000 0000 00000112235788999999999998899999999999999887 5 777877
Q ss_pred eecCCCcEEEEEeCEEEEccCCCCC
Q 013435 148 QQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 148 ~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.++.+ ..+++||+||.|+|.+|.
T Consensus 162 ~~~~~--~~~i~a~~vV~AdG~~S~ 184 (535)
T 3ihg_A 162 AGPDG--EYDLRAGYLVGADGNRSL 184 (535)
T ss_dssp EETTE--EEEEEEEEEEECCCTTCH
T ss_pred EcCCC--eEEEEeCEEEECCCCcch
Confidence 76432 478999999999998763
No 117
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=99.09 E-value=3.7e-10 Score=110.87 Aligned_cols=63 Identities=16% Similarity=0.253 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHHcCCccccce---eEEEEEEeCCCCeEE-EEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNT---TVVNAEYDHLSRLWR-VKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~---~V~~i~~~~~~~~~~-v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
....+...+.+.+.+.|+++++++ +|+++..++ +.+. |++.++ .+++||.||+|+|.++....
T Consensus 159 ~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~--~~v~gV~t~~G-----~~i~Ad~VV~AtG~~s~~l~ 225 (438)
T 3dje_A 159 HARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN--NDVKGAVTADG-----KIWRAERTFLCAGASAGQFL 225 (438)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET--TEEEEEEETTT-----EEEECSEEEECCGGGGGGTS
T ss_pred cHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC--CeEEEEEECCC-----CEEECCEEEECCCCChhhhc
Confidence 456888888888889999999998 999999876 6776 777765 68999999999998765433
No 118
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=99.09 E-value=3.9e-10 Score=108.14 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
....+...+.+.+.+.|++++.+++|++++.++ +.|.|++.+ .+++||.||+|+|.++....+
T Consensus 147 ~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~------g~~~a~~vV~a~G~~s~~l~~ 209 (372)
T 2uzz_A 147 RSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDD--DGVTIETAD------GEYQAKKAIVCAGTWVKDLLP 209 (372)
T ss_dssp EHHHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SSEEEEESS------CEEEEEEEEECCGGGGGGTST
T ss_pred cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcC--CEEEEEECC------CeEEcCEEEEcCCccHHhhcc
Confidence 345778888888888899999999999999876 457777665 359999999999987654444
No 119
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=99.08 E-value=1.3e-09 Score=100.47 Aligned_cols=136 Identities=14% Similarity=0.138 Sum_probs=83.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCCc-ccccCC-CCceeeecCC-ccccCCCCCCCCCCCC--CCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEK-GVPSLILERANCIAS-LWQLKT-YDRLRLHLPK-QFCQLPLMPFPSNFPT--YPT 106 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~-g~~v~iie~~~~~gg-~w~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~ 106 (443)
..+||+|||||++|+++|..|++. |.+|+|+|+.+.+|+ .|.... +..+...... ....-...++...... ...
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 117 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH 117 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecC
Confidence 457999999999999999999997 999999999887765 443211 1111111000 0000001111100000 114
Q ss_pred HHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCCCeE-EEEEee---------cCCCcEEEEEeCEEEEccCCC
Q 013435 107 KQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLSRLW-RVKTQQ---------GLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 107 ~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~-~v~~~~---------~~~~~~~~i~a~~vIiAtG~~ 170 (443)
..++...+.+.+.+ .+++++++++|+++..++ +.+ .|.+.. +..++...++||.||+|+|..
T Consensus 118 ~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~--~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~ 190 (284)
T 1rp0_A 118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHD 190 (284)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEET--TEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSS
T ss_pred HHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecC--CeEEEEEEeccccccccCccccCceEEEECCEEEECCCCc
Confidence 56677677666654 688999999999998775 332 344431 111234789999999999953
No 120
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=99.06 E-value=1.6e-09 Score=109.89 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=90.1
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHc------CCCEEEEecCCCCCcccccCC--C--------Cc---------------
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEK------GVPSLILERANCIASLWQLKT--Y--------DR--------------- 80 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~------g~~v~iie~~~~~gg~w~~~~--~--------~~--------------- 80 (443)
.+.+||+|||||++|+++|..|++. |.+|+|+|+.+.+|+...... . +.
T Consensus 33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~ 112 (584)
T 2gmh_A 33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTED 112 (584)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEE
T ss_pred ccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechh
Confidence 4568999999999999999999999 999999999876654211000 0 00
Q ss_pred -eeeecCCccccCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEee---cCCC
Q 013435 81 -LRLHLPKQFCQLPLMP---FPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQ---GLKQ 153 (443)
Q Consensus 81 -~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~---~~~~ 153 (443)
+..........++..+ ..........+..+...+.+.+++.|+++++++.|+++..+++.....|.+.+ ...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G 192 (584)
T 2gmh_A 113 RFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDG 192 (584)
T ss_dssp EEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTS
T ss_pred heeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCC
Confidence 0000000001111101 00000112467889999999999899999999999999887532223365542 0112
Q ss_pred cE-------EEEEeCEEEEccCCCCC
Q 013435 154 EE-------TVYLCQWLIVATGENAE 172 (443)
Q Consensus 154 ~~-------~~i~a~~vIiAtG~~~~ 172 (443)
+. .+++||+||+|+|.++.
T Consensus 193 ~~~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 193 APKTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp CEEEEEECCCEEECSEEEECCCTTCH
T ss_pred CcccccCCceEEECCEEEEeeCCCch
Confidence 21 47999999999998764
No 121
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=99.05 E-value=3.2e-10 Score=109.10 Aligned_cols=126 Identities=18% Similarity=0.203 Sum_probs=84.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC------------------------CCCceeeecCCc-
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK------------------------TYDRLRLHLPKQ- 88 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~------------------------~~~~~~~~~~~~- 88 (443)
.+||+|||||++|+++|..|++.|.+|+|+|+.+..++..... ....+.......
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 5799999999999999999999999999999987654210000 000000000000
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccC
Q 013435 89 FCQLPLMPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATG 168 (443)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG 168 (443)
...++ ..........+..+...+.+.+.+.|++++++++|++++. + + .|++.++ .+++||+||+|+|
T Consensus 91 ~~~~~---~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~--~--~v~~~~g-----~~~~ad~vV~AdG 157 (379)
T 3alj_A 91 VSKET---FNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-V--G--RLTLQTG-----EVLEADLIVGADG 157 (379)
T ss_dssp EEEEC---GGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-T--T--EEEETTS-----CEEECSEEEECCC
T ss_pred eeecc---CCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C--C--EEEECCC-----CEEEcCEEEECCC
Confidence 00000 0000011246788999999988888999999999999976 3 3 5777654 5799999999999
Q ss_pred CCCC
Q 013435 169 ENAE 172 (443)
Q Consensus 169 ~~~~ 172 (443)
.++.
T Consensus 158 ~~s~ 161 (379)
T 3alj_A 158 VGSK 161 (379)
T ss_dssp TTCH
T ss_pred ccHH
Confidence 7654
No 122
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=99.05 E-value=6.4e-10 Score=109.67 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=86.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC--CcccccCC-----CCceeeecC---------CccccC-CC--
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI--ASLWQLKT-----YDRLRLHLP---------KQFCQL-PL-- 94 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~--gg~w~~~~-----~~~~~~~~~---------~~~~~~-~~-- 94 (443)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. |..+.... +..+.+..+ .....+ +.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 85 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQ 85 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCc
Confidence 489999999999999999999999999999998753 22221100 000000000 000000 00
Q ss_pred --CCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 95 --MPFPSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 95 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
..++. ......+..+.+.+.+.+.+.|++++++++|+++..++ +.+. |++.+...++..+++||.||.|+|.++
T Consensus 86 ~~~~~~~-~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 86 TVWTVNG-EGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFED--GYVKGAVLFNRRTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp CEEEEEE-EEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred eEEeECC-CcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence 00000 01124678888999988888899999999999998876 4543 555432122335899999999999866
Q ss_pred C
Q 013435 172 E 172 (443)
Q Consensus 172 ~ 172 (443)
.
T Consensus 163 ~ 163 (453)
T 3atr_A 163 S 163 (453)
T ss_dssp T
T ss_pred h
Confidence 4
No 123
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=99.05 E-value=3.1e-10 Score=109.80 Aligned_cols=137 Identities=20% Similarity=0.197 Sum_probs=85.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC------C-c-cccc--------CCC----------CceeeecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI------A-S-LWQL--------KTY----------DRLRLHLPK 87 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~------g-g-~w~~--------~~~----------~~~~~~~~~ 87 (443)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. + | .+.. ..+ ..+......
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 81 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG 81 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECC
Confidence 479999999999999999999999999999997631 1 1 1110 000 000000000
Q ss_pred ccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEE-eecCCCcEEEEEeCEEEE
Q 013435 88 QFCQLPLMPFP-SNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKT-QQGLKQEETVYLCQWLIV 165 (443)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~-~~~~~~~~~~i~a~~vIi 165 (443)
....+...... ...........+...+.+.+.+.+++++++++|++++..++ +.+.|+. .++ +..+++||+||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~-~~~~v~~~~~g---~~~~~~a~~vV~ 157 (394)
T 1k0i_A 82 QRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQG-ERPYVTFERDG---ERLRLDCDYIAG 157 (394)
T ss_dssp EEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTS-SSCEEEEEETT---EEEEEECSEEEE
T ss_pred ceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecC-CceEEEEecCC---cEEEEEeCEEEE
Confidence 00000000000 00011125667777888877778999999999999987532 3456766 443 224799999999
Q ss_pred ccCCCCCCc
Q 013435 166 ATGENAEEV 174 (443)
Q Consensus 166 AtG~~~~p~ 174 (443)
|+|.+|..+
T Consensus 158 AdG~~S~vr 166 (394)
T 1k0i_A 158 CDGFHGISR 166 (394)
T ss_dssp CCCTTCSTG
T ss_pred CCCCCcHHH
Confidence 999877643
No 124
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=99.04 E-value=3.3e-10 Score=114.06 Aligned_cols=173 Identities=16% Similarity=0.175 Sum_probs=105.1
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCcccccCCCCcee-------eec-CC--------ccccCC-
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN-CIASLWQLKTYDRLR-------LHL-PK--------QFCQLP- 93 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~~~~~~~~-------~~~-~~--------~~~~~~- 93 (443)
...|||+|||||++|+++|..|++.|.+|+|+|+.. .+|+.++........ +.. .. ...++.
T Consensus 19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~ 98 (641)
T 3cp8_A 19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRM 98 (641)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhh
Confidence 346899999999999999999999999999999974 355433321100000 000 00 000000
Q ss_pred --CCCCCCCC--CCCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEE-EEEeecCCCcEEEEEeCEEEEcc
Q 013435 94 --LMPFPSNF--PTYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWR-VKTQQGLKQEETVYLCQWLIVAT 167 (443)
Q Consensus 94 --~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~i~a~~vIiAt 167 (443)
....+... .....+..+...+.+.+++. ++++ ++..|+.+..++ +.+. |.+.++ ..+.||.||+||
T Consensus 99 l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I-~~~~V~~L~~d~--g~V~GV~t~~G-----~~i~Ad~VVLAT 170 (641)
T 3cp8_A 99 LNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDL-LQDTVIGVSANS--GKFSSVTVRSG-----RAIQAKAAILAC 170 (641)
T ss_dssp ECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEEET--TEEEEEEETTS-----CEEEEEEEEECC
T ss_pred cccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEE-EeeEEEEEEecC--CEEEEEEECCC-----cEEEeCEEEECc
Confidence 00000000 00135667888888888774 7777 455898888766 4444 666554 589999999999
Q ss_pred CCCCCCccCCCCCCCCCcccEeecCCCCCCCCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEe
Q 013435 168 GENAEEVVPYIEGMDGFRGPIFHSSSYKTGELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVR 233 (443)
Q Consensus 168 G~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r 233 (443)
|.++. .+.+.|...+ . ..++ + |+.++++++..|.+.|.+|+.+..
T Consensus 171 G~~s~--~~i~~G~~~~------~----------~g~~--v-G~~~a~~la~~L~~~G~kv~~l~t 215 (641)
T 3cp8_A 171 GTFLN--GLIHIGMDHF------P----------GGRS--T-AEPPVEGLTESLASLGFSFGRLKT 215 (641)
T ss_dssp TTCBT--CEEEETTEEE------E----------CSSS--T-TSCCBCSHHHHHHHTTCCEEEEEE
T ss_pred CCCCC--ccceeeeeee------c----------cccc--c-CCchhhhhHHHHHhCCceEEeecC
Confidence 96433 2223332211 0 0111 1 467889999999999999877654
No 125
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=99.03 E-value=3.2e-09 Score=107.77 Aligned_cols=139 Identities=17% Similarity=0.148 Sum_probs=89.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceee------------ecCCc-----------
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRL------------HLPKQ----------- 88 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~------------~~~~~----------- 88 (443)
...+||+|||||++|+++|..|++.|.+|+|+|+.+..||.+.... ..+.. +....
T Consensus 124 ~~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~-gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~ 202 (571)
T 1y0p_A 124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAA-GGMNAAWTDQQKAKKITDSPELMFEDTMKGGQN 202 (571)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCC-SCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcC-ceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence 3468999999999999999999999999999999988776432210 00000 00000
Q ss_pred --------------------c--ccCCC--------CCCCCCC---CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEE
Q 013435 89 --------------------F--CQLPL--------MPFPSNF---PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAE 135 (443)
Q Consensus 89 --------------------~--~~~~~--------~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~ 135 (443)
+ ...+. ..++... .+......+...+.+.+.+.+++++++++|+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~ 282 (571)
T 1y0p_A 203 INDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVL 282 (571)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEE
T ss_pred CCCHHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeE
Confidence 0 00000 0000000 0113457888899998889999999999999998
Q ss_pred EeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 136 YDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.+++...+-|...+. .++..++.||.||+|||.++.
T Consensus 283 ~~~~g~v~Gv~~~~~-~g~~~~i~a~~VVlAtGg~~~ 318 (571)
T 1y0p_A 283 KDDKGTVKGILVKGM-YKGYYWVKADAVILATGGFAK 318 (571)
T ss_dssp ECTTSCEEEEEEEET-TTEEEEEECSEEEECCCCCTT
T ss_pred EcCCCeEEEEEEEeC-CCcEEEEECCeEEEeCCCccc
Confidence 765223333444431 223458999999999997654
No 126
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.02 E-value=9.3e-10 Score=105.16 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
....+...+.+.+.+.|++++++++|+++..+++ +.+.|.+.++ +..+++||.||+|+|.++..
T Consensus 148 ~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~-~~~~v~~~~g---~~~~~~a~~VV~A~G~~s~~ 211 (369)
T 3dme_A 148 DSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPE-GGFELDFGGA---EPMTLSCRVLINAAGLHAPG 211 (369)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTT-SSEEEEECTT---SCEEEEEEEEEECCGGGHHH
T ss_pred CHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCC-ceEEEEECCC---ceeEEEeCEEEECCCcchHH
Confidence 4677888888888899999999999999998763 3477776653 23589999999999987543
No 127
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=99.02 E-value=5.7e-10 Score=107.37 Aligned_cols=135 Identities=15% Similarity=0.084 Sum_probs=87.9
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc-cccC-------C-----------------CC-----
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL-WQLK-------T-----------------YD----- 79 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~-w~~~-------~-----------------~~----- 79 (443)
+....+||+|||||++|+++|++|++.|.+|+|+|+....+|. +... . |.
T Consensus 13 ~~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 92 (382)
T 1ryi_A 13 AMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEE 92 (382)
T ss_dssp -CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHH
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcccchhcCceeccCccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3345689999999999999999999999999999998644431 1110 0 00
Q ss_pred -----ceeeec-CCccc-------------------------------cCCCCCCCC------CCCCCCCHHHHHHHHHH
Q 013435 80 -----RLRLHL-PKQFC-------------------------------QLPLMPFPS------NFPTYPTKQQFLTYLET 116 (443)
Q Consensus 80 -----~~~~~~-~~~~~-------------------------------~~~~~~~~~------~~~~~~~~~~~~~~l~~ 116 (443)
+..+.. ..... .++...... ..........+...+.+
T Consensus 93 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (382)
T 1ryi_A 93 LYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVK 172 (382)
T ss_dssp HHHHHCCCCCCBCCCEEEEESSHHHHHHHHTTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHHHH
T ss_pred HHHhhCCCcCeeecceEEEEeCHHHHHHHHHHhhcCCeEEECHHHHHHhCCCCCcccceEEEeCCCeEEcHHHHHHHHHH
Confidence 000000 00000 001100000 01133456888888988
Q ss_pred HHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 117 YTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 117 ~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.+.+.|++++.+++|+++...+ +.|.|++.+ .+++||.||+|+|.++.
T Consensus 173 ~~~~~g~~i~~~~~v~~i~~~~--~~~~v~~~~------g~~~a~~vV~A~G~~s~ 220 (382)
T 1ryi_A 173 AAKMLGAEIFEHTPVLHVERDG--EALFIKTPS------GDVWANHVVVASGVWSG 220 (382)
T ss_dssp HHHHTTCEEETTCCCCEEECSS--SSEEEEETT------EEEEEEEEEECCGGGTH
T ss_pred HHHHCCCEEEcCCcEEEEEEEC--CEEEEEcCC------ceEEcCEEEECCChhHH
Confidence 8888899999999999998766 556666644 47999999999998654
No 128
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=99.02 E-value=7e-10 Score=107.49 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=83.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC-----CcccccCCCCceee-e------------cCC--ccccC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI-----ASLWQLKTYDRLRL-H------------LPK--QFCQL 92 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~-----gg~w~~~~~~~~~~-~------------~~~--~~~~~ 92 (443)
..+||+|||||++|+++|..|++.|++|+|+|+.+.. |+.+.......... . .+. .+...
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 104 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE 104 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence 4579999999999999999999999999999997643 22222110000000 0 000 00000
Q ss_pred CCC---CC--CC---CCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEE
Q 013435 93 PLM---PF--PS---NFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLI 164 (443)
Q Consensus 93 ~~~---~~--~~---~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vI 164 (443)
... .. +. .......+..+.+++.+.+. +..++++++|++++..+ +.|.|++.++ .+++||+||
T Consensus 105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~ad~vV 175 (398)
T 2xdo_A 105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLE--NDTVIWDRKLVMLEPGK--KKWTLTFENK-----PSETADLVI 175 (398)
T ss_dssp SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSC--TTSEEESCCEEEEEECS--SSEEEEETTS-----CCEEESEEE
T ss_pred CCCchhhccccccCCCCCceECHHHHHHHHHhhcC--CCEEEECCEEEEEEECC--CEEEEEECCC-----cEEecCEEE
Confidence 000 00 00 00112356777777766543 25788999999999876 6677887765 579999999
Q ss_pred EccCCCCCC
Q 013435 165 VATGENAEE 173 (443)
Q Consensus 165 iAtG~~~~p 173 (443)
.|+|.+|..
T Consensus 176 ~AdG~~S~v 184 (398)
T 2xdo_A 176 LANGGMSKV 184 (398)
T ss_dssp ECSCTTCSC
T ss_pred ECCCcchhH
Confidence 999987653
No 129
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=99.02 E-value=3.6e-09 Score=105.95 Aligned_cols=136 Identities=19% Similarity=0.274 Sum_probs=86.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC----CCcccccC----------CCCc-----ee------eecCCc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANC----IASLWQLK----------TYDR-----LR------LHLPKQ 88 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~----~gg~w~~~----------~~~~-----~~------~~~~~~ 88 (443)
.+||+|||||++|+++|..|++.|++|+|+|+.+. .|..+... ..+. .. ......
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 86 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKE 86 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCC
Confidence 47999999999999999999999999999999873 22211100 0000 00 000000
Q ss_pred ----cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEEeecCCCcEEEEEeCE
Q 013435 89 ----FCQLPLMPF-PSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKTQQGLKQEETVYLCQW 162 (443)
Q Consensus 89 ----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~i~a~~ 162 (443)
...+...+. .........+..+...+.+.+.+.|++++++++|+++..++ +.+. |.+... .++..+++||.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~--~~v~gv~~~~~-dG~~~~i~ad~ 163 (512)
T 3e1t_A 87 PEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEG--ERAVGVRYRNT-EGVELMAHARF 163 (512)
T ss_dssp SSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEET--TEEEEEEEECS-SSCEEEEEEEE
T ss_pred ccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEEC--CEEEEEEEEeC-CCCEEEEEcCE
Confidence 000000000 00111125788999999999988999999999999999876 4432 443321 22346899999
Q ss_pred EEEccCCCCC
Q 013435 163 LIVATGENAE 172 (443)
Q Consensus 163 vIiAtG~~~~ 172 (443)
||.|+|.++.
T Consensus 164 VI~AdG~~S~ 173 (512)
T 3e1t_A 164 IVDASGNRTR 173 (512)
T ss_dssp EEECCCTTCS
T ss_pred EEECCCcchH
Confidence 9999998764
No 130
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=99.01 E-value=6.5e-10 Score=107.73 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=86.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc--------------CCC----------CceeeecCC--
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL--------------KTY----------DRLRLHLPK-- 87 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--------------~~~----------~~~~~~~~~-- 87 (443)
.+||+|||||++|+++|..|++.|.+|+|+|+.+......+. ..+ ..+......
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~ 85 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGE 85 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTE
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCC
Confidence 468999999999999999999999999999997654110000 000 000000000
Q ss_pred ccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeE--EEEEeecCCCcEEEEEeCEE
Q 013435 88 QFCQLPLMPFP-SNFPTYPTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLW--RVKTQQGLKQEETVYLCQWL 163 (443)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~--~v~~~~~~~~~~~~i~a~~v 163 (443)
....++..... ..+.....+..+.+.+.+.+.+. +++++++++|++++.++ +.+ .|++.++ .+++||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~g~v~~~~g-----~~~~ad~v 158 (399)
T 2x3n_A 86 LLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDE--RHAIDQVRLNDG-----RVLRPRVV 158 (399)
T ss_dssp EEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECT--TSCEEEEEETTS-----CEEEEEEE
T ss_pred EEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcC--CceEEEEEECCC-----CEEECCEE
Confidence 00011100000 00112357788999999988887 88999999999999876 556 6777654 47999999
Q ss_pred EEccCCCCC
Q 013435 164 IVATGENAE 172 (443)
Q Consensus 164 IiAtG~~~~ 172 (443)
|.|+|.++.
T Consensus 159 V~AdG~~s~ 167 (399)
T 2x3n_A 159 VGADGIASY 167 (399)
T ss_dssp EECCCTTCH
T ss_pred EECCCCChH
Confidence 999998664
No 131
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=99.00 E-value=3.8e-09 Score=106.60 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=87.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccC----------------------CCCc------eeee
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLK----------------------TYDR------LRLH 84 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~----------------------~~~~------~~~~ 84 (443)
..+||+||||||+|+++|..|++.|.+|+|+|+.+..+...+.. ..+. ....
T Consensus 25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 104 (549)
T 2r0c_A 25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVT 104 (549)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEES
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEec
Confidence 34799999999999999999999999999999987654321110 0000 0000
Q ss_pred c--CCccccCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCc
Q 013435 85 L--PKQFCQLPLMPF--------PSNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQE 154 (443)
Q Consensus 85 ~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~ 154 (443)
. ......+..... .........+..+...+.+.+.+. ++++++|++++.++ +.+++++.+...++
T Consensus 105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~--~~v~v~~~~~~~G~ 179 (549)
T 2r0c_A 105 RVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRD--DHVRATITDLRTGA 179 (549)
T ss_dssp SBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECS--SCEEEEEEETTTCC
T ss_pred cCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeC--CEEEEEEEECCCCC
Confidence 0 000101111000 000011246778888888887765 88999999999877 56777776633344
Q ss_pred EEEEEeCEEEEccCCCCC
Q 013435 155 ETVYLCQWLIVATGENAE 172 (443)
Q Consensus 155 ~~~i~a~~vIiAtG~~~~ 172 (443)
..+++||+||.|+|.+|.
T Consensus 180 ~~~i~a~~vVgADG~~S~ 197 (549)
T 2r0c_A 180 TRAVHARYLVACDGASSP 197 (549)
T ss_dssp EEEEEEEEEEECCCTTCH
T ss_pred EEEEEeCEEEECCCCCcH
Confidence 468999999999998764
No 132
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=99.00 E-value=9.5e-10 Score=113.93 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
....+...+.+.+.+.|++++++++|+++..++ +.|.|++.++ .++.||.||+|+|.++.
T Consensus 415 ~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~--~~v~V~t~~G-----~~i~Ad~VVlAtG~~s~ 474 (676)
T 3ps9_A 415 CPAELTRNVLELAQQQGLQIYYQYQLQNFSRKD--DCWLLNFAGD-----QQATHSVVVLANGHQIS 474 (676)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEESCCEEEEEEET--TEEEEEETTS-----CEEEESEEEECCGGGGG
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC--CeEEEEECCC-----CEEECCEEEECCCcchh
Confidence 457788888888888999999999999999887 6688887654 56999999999998654
No 133
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=98.99 E-value=5.3e-09 Score=101.68 Aligned_cols=137 Identities=18% Similarity=0.095 Sum_probs=86.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCC-EEEEecCCCCCcccccC-CC-----------------------CceeeecCCc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVP-SLILERANCIASLWQLK-TY-----------------------DRLRLHLPKQ 88 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~~-~~-----------------------~~~~~~~~~~ 88 (443)
.+||+|||||++|+++|..|++.|.+ |+|+|+.+..+...... .+ ..+.......
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g 83 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 83 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence 47999999999999999999999999 99999987654221110 00 0000000000
Q ss_pred --cccCCCC-CCCCCCC-CCCCHHHHHHHHHHHHHH-cC-CccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCE
Q 013435 89 --FCQLPLM-PFPSNFP-TYPTKQQFLTYLETYTNH-FG-LDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQW 162 (443)
Q Consensus 89 --~~~~~~~-~~~~~~~-~~~~~~~~~~~l~~~~~~-~~-~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~ 162 (443)
....+.. ......+ ....+..+...+.+.+.+ .+ +.++++++|++++. + +.+.|++.+...++..+++||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~--~~v~v~~~~~~~g~~~~~~ad~ 160 (410)
T 3c96_A 84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-R--DGRVLIGARDGHGKPQALGADV 160 (410)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-E--TTEEEEEEEETTSCEEEEEESE
T ss_pred CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-C--CccEEEEecCCCCCceEEecCE
Confidence 0000000 0000001 123567888888887765 46 57899999999988 5 5566777652222346899999
Q ss_pred EEEccCCCCCC
Q 013435 163 LIVATGENAEE 173 (443)
Q Consensus 163 vIiAtG~~~~p 173 (443)
||.|+|.+|..
T Consensus 161 vV~AdG~~S~v 171 (410)
T 3c96_A 161 LVGADGIHSAV 171 (410)
T ss_dssp EEECCCTTCHH
T ss_pred EEECCCccchh
Confidence 99999987653
No 134
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=98.99 E-value=1.8e-09 Score=104.19 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
....+...+.+.+.+.|++++.+++|++++..+ +.|.|++.+ .+++||.||+|+|.++.
T Consensus 148 ~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~~~v~~~~------g~~~a~~vV~A~G~~~~ 206 (389)
T 2gf3_A 148 FSENCIRAYRELAEARGAKVLTHTRVEDFDISP--DSVKIETAN------GSYTADKLIVSMGAWNS 206 (389)
T ss_dssp EHHHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SCEEEEETT------EEEEEEEEEECCGGGHH
T ss_pred eHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecC--CeEEEEeCC------CEEEeCEEEEecCccHH
Confidence 447788888888888999999999999999876 457776654 47999999999997654
No 135
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=98.98 E-value=2.9e-09 Score=110.46 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEE-EEEeCEEEEccCCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEET-VYLCQWLIVATGENAE 172 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~-~i~a~~vIiAtG~~~~ 172 (443)
....+...+.+.+.+.|++++++++|+++..++ +.|.|.+.++ . +++||.||+|+|.++.
T Consensus 410 ~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~--~~v~V~t~~G-----~~~i~Ad~VVlAtG~~s~ 470 (689)
T 3pvc_A 410 CPSDLTHALMMLAQQNGMTCHYQHELQRLKRID--SQWQLTFGQS-----QAAKHHATVILATGHRLP 470 (689)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEESCCEEEEEECS--SSEEEEEC-C-----CCCEEESEEEECCGGGTT
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeC--CeEEEEeCCC-----cEEEECCEEEECCCcchh
Confidence 457778888888888899999999999999887 5688887764 4 7999999999998754
No 136
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=98.98 E-value=5.3e-09 Score=105.95 Aligned_cols=140 Identities=12% Similarity=0.133 Sum_probs=89.1
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCC------C----------Cceee---e--------
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKT------Y----------DRLRL---H-------- 84 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~------~----------~~~~~---~-------- 84 (443)
...+||+|||||++|+++|..|++.|.+|+|||+.+..||...... . +.... +
T Consensus 119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~ 198 (566)
T 1qo8_A 119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ 198 (566)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence 4668999999999999999999999999999999987765322110 0 00000 0
Q ss_pred cCCc---------------c--ccCC--------CCCCCCCC---CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEE
Q 013435 85 LPKQ---------------F--CQLP--------LMPFPSNF---PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEY 136 (443)
Q Consensus 85 ~~~~---------------~--~~~~--------~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~ 136 (443)
.... + ..++ ...++..+ ........+...+.+.+.+.+++++++++|+++..
T Consensus 199 ~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~ 278 (566)
T 1qo8_A 199 NDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVV 278 (566)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEE
T ss_pred CCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE
Confidence 0000 0 0000 01111000 01134678888999989999999999999999987
Q ss_pred eCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 137 DHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+++...+-|...+ ..++...+.||.||+|||.++.
T Consensus 279 ~~~g~v~Gv~~~~-~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 279 NDDHSVVGAVVHG-KHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp CTTSBEEEEEEEE-TTTEEEEEEEEEEEECCCCCTT
T ss_pred CCCCcEEEEEEEe-CCCcEEEEEcCEEEEecCCccc
Confidence 6521333344442 1223357999999999998664
No 137
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.97 E-value=2.8e-09 Score=102.59 Aligned_cols=59 Identities=17% Similarity=0.101 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
.....+...+.+.+.+.|++++.+++|++++.++ +.+. |++.+ .+++||.||+|+|.++
T Consensus 146 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~v~gv~~~~------g~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 146 ADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIEN--NEIKGVKTNK------GIIKTGIVVNATNAWA 205 (382)
T ss_dssp ECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEETT------EEEECSEEEECCGGGH
T ss_pred ECHHHHHHHHHHHHHHCCCEEECCceEEEEEEEC--CEEEEEEECC------cEEECCEEEECcchhH
Confidence 3567888888888888999999999999999876 5665 66654 4799999999999765
No 138
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=98.96 E-value=4.9e-09 Score=105.87 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
....+...+...+.+.|+.++.+++|+++..+++ ..+.|++.+...++...++|+.||+|+|.++
T Consensus 168 d~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g-~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 168 DDARLTLEIMKEAVARGAVALNYMKVESFIYDQG-KVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETT-EEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred cHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-eEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 4566777777888888999999999999998762 3355777664444557899999999999865
No 139
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=98.96 E-value=3.6e-09 Score=102.39 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=81.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC-Cc----cccc----------CCCCceeeecCCc---cccC-CC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI-AS----LWQL----------KTYDRLRLHLPKQ---FCQL-PL 94 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~-gg----~w~~----------~~~~~~~~~~~~~---~~~~-~~ 94 (443)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. .+ .+.. ...+ .....+.. +... ..
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~g 83 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL-DSISVPSSSMEYVDALTG 83 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG-GGTCBCCCEEEEEETTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc-ccccccccceEEEecCCC
Confidence 479999999999999999999999999999997653 11 1000 0000 00000000 0000 00
Q ss_pred CCCC--CCCCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 95 MPFP--SNFPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 95 ~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.... ...........+.+.+.+.+ .+++++++++|++++..+ +.+.|++.++ .+++||+||.|+|.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 84 ERVGSVPADWRFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDS--ETVQMRFSDG-----TKAEANWVIGADGGASV 154 (397)
T ss_dssp CEEEEEECCCCEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECS--SCEEEEETTS-----CEEEESEEEECCCTTCH
T ss_pred CccccccCcccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecC--CEEEEEECCC-----CEEECCEEEECCCcchh
Confidence 0000 00001234566777666654 378899999999999877 6677887765 57999999999998764
No 140
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=98.96 E-value=1.4e-09 Score=104.45 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.....+...+.+.+.+.|++++++++|+++..++ +.|.|++.+ .+++||.||+|+|.++.
T Consensus 151 ~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~~~V~t~~------g~i~a~~VV~A~G~~s~ 210 (381)
T 3nyc_A 151 IDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVD--GAWEVRCDA------GSYRAAVLVNAAGAWCD 210 (381)
T ss_dssp ECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEET--TEEEEECSS------EEEEESEEEECCGGGHH
T ss_pred ECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeC--CeEEEEeCC------CEEEcCEEEECCChhHH
Confidence 3567788888888888999999999999999887 568787765 58999999999998654
No 141
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=98.96 E-value=4.1e-09 Score=98.33 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=84.1
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCC-cccccCCC-CceeeecCCccccC--CCCCCCC--CCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIA-SLWQLKTY-DRLRLHLPKQFCQL--PLMPFPS--NFPT 103 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~g-g~w~~~~~-~~~~~~~~~~~~~~--~~~~~~~--~~~~ 103 (443)
...+||+|||||++|+++|..|+++ |++|+|+|+...+| +.|..... ...... +.....+ ...++.. .+..
T Consensus 77 ~~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~-~~~~~~L~~~Gv~~~~~G~~~~ 155 (344)
T 3jsk_A 77 HAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMR-KPADVFLDEVGVPYEDEGDYVV 155 (344)
T ss_dssp HHBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEE-TTTHHHHHHHTCCCEECSSEEE
T ss_pred cCcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcc-hHHHHHHHHcCCcccccCCeEE
Confidence 4568999999999999999999998 99999999988776 45644322 222221 1110000 0011100 0001
Q ss_pred CCCHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCC---------------C--eE-EEEEe------ecCC---CcE
Q 013435 104 YPTKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLS---------------R--LW-RVKTQ------QGLK---QEE 155 (443)
Q Consensus 104 ~~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~---------------~--~~-~v~~~------~~~~---~~~ 155 (443)
.....++...+.+.+.+ .+++++.++.|+++..+++. + .+ -|.+. .+.. .+.
T Consensus 156 ~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~ 235 (344)
T 3jsk_A 156 VKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDP 235 (344)
T ss_dssp ESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBC
T ss_pred EecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCc
Confidence 12356666777777766 48889999999988765420 1 11 12221 1100 133
Q ss_pred EEEEeCEEEEccCCCC
Q 013435 156 TVYLCQWLIVATGENA 171 (443)
Q Consensus 156 ~~i~a~~vIiAtG~~~ 171 (443)
.+++|++||+|||..+
T Consensus 236 ~~i~Ak~VV~ATG~~s 251 (344)
T 3jsk_A 236 NTINAPVIISTTGHDG 251 (344)
T ss_dssp EEEECSEEEECCCSSS
T ss_pred eEEEcCEEEECCCCCc
Confidence 7899999999999643
No 142
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=98.93 E-value=1.2e-08 Score=101.71 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
....+...+.+.+.+.|++++.+++|+++..++ +.|.|++.+...++..+++||.||+|+|.++.
T Consensus 147 ~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~ 211 (501)
T 2qcu_A 147 DDARLVLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK 211 (501)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred cHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence 467788888888888899999999999999876 67778775432334458999999999998654
No 143
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=98.92 E-value=3.7e-09 Score=102.29 Aligned_cols=58 Identities=21% Similarity=0.110 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
....+...+.+.+.+.|++++++++|+++..++ +.+.|++.+ .+++||.||+|+|.++
T Consensus 151 ~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~v~t~~------g~i~a~~VV~A~G~~s 208 (397)
T 2oln_A 151 DVRGTLAALFTLAQAAGATLRAGETVTELVPDA--DGVSVTTDR------GTYRAGKVVLACGPYT 208 (397)
T ss_dssp EHHHHHHHHHHHHHHTTCEEEESCCEEEEEEET--TEEEEEESS------CEEEEEEEEECCGGGH
T ss_pred cHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcC--CeEEEEECC------CEEEcCEEEEcCCcCh
Confidence 345677777788888899999999999999876 567776544 4799999999999764
No 144
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=98.91 E-value=1.3e-08 Score=104.59 Aligned_cols=140 Identities=15% Similarity=0.180 Sum_probs=89.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHH-cCCCEEEEecCCCCCcccccCC------------------------CCceeeecC-
Q 013435 33 MVPGPVIVGAGPSGLATAACLTE-KGVPSLILERANCIASLWQLKT------------------------YDRLRLHLP- 86 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~-~g~~v~iie~~~~~gg~w~~~~------------------------~~~~~~~~~- 86 (443)
..+||+||||||+|+++|..|++ .|++|+|+|+.+..+...+... ...+.....
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~ 110 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPD 110 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEEC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCC
Confidence 35799999999999999999999 9999999999875542211100 000000000
Q ss_pred ----Cccc---cCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHcCC--ccccceeEEEEEEeCC--CCeEEEEEeec---
Q 013435 87 ----KQFC---QLPLMP--FPSNFPTYPTKQQFLTYLETYTNHFGL--DPVFNTTVVNAEYDHL--SRLWRVKTQQG--- 150 (443)
Q Consensus 87 ----~~~~---~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~--~v~~~~~V~~i~~~~~--~~~~~v~~~~~--- 150 (443)
.... .++... ..........+..+...+.+.+.+.++ .++++++|++++.+++ ...+.|++.+.
T Consensus 111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~ 190 (639)
T 2dkh_A 111 PGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAA 190 (639)
T ss_dssp TTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGG
T ss_pred CCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecccc
Confidence 0000 000000 000001124678899999999999876 8999999999998652 12566766541
Q ss_pred CCCcEEEEEeCEEEEccCCCCC
Q 013435 151 LKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 151 ~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
..++..+++||+||.|+|.+|.
T Consensus 191 ~~G~~~~i~a~~vVgADG~~S~ 212 (639)
T 2dkh_A 191 HAGQIETVQARYVVGCDGARSN 212 (639)
T ss_dssp GTTCEEEEEEEEEEECCCTTCH
T ss_pred CCCCeEEEEeCEEEECCCcchH
Confidence 1234468999999999998764
No 145
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=98.86 E-value=3.7e-08 Score=98.43 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeC-EEEEccCCCC
Q 013435 109 QFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQ-WLIVATGENA 171 (443)
Q Consensus 109 ~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~-~vIiAtG~~~ 171 (443)
.+...+.+.+++.++++++++.|+++..+++....-|...+ .++..+++|+ .||+|||.++
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~--~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ--YGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEE--TTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEE--CCcEEEEEeCCeEEEeCCChh
Confidence 78888888888889999999999999987332333355544 2244689995 9999999865
No 146
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=98.86 E-value=5.1e-09 Score=101.48 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
.....+...+.+.+.+.|++++.+++|+++..+++ ..+.|++.+ .++.||.||+|+|.++
T Consensus 171 ~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~-~~~~v~~~~------g~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 171 AKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGE-KVTGVKTTR------GTIHAGKVALAGAGHS 230 (405)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSS-BEEEEEETT------CCEEEEEEEECCGGGH
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCC-EEEEEEeCC------ceEECCEEEECCchhH
Confidence 45668888888888889999999999999988752 345666654 2699999999999754
No 147
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=98.85 E-value=3.7e-08 Score=101.42 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=87.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHH-----cCCCEEEEecCCCCCccccc------------------------CCCCceeee
Q 013435 34 VPGPVIVGAGPSGLATAACLTE-----KGVPSLILERANCIASLWQL------------------------KTYDRLRLH 84 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~-----~g~~v~iie~~~~~gg~w~~------------------------~~~~~~~~~ 84 (443)
.+||+||||||+|+++|..|++ .|++++|||+.+......+. .....+...
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~~ 87 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALY 87 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEE
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEEE
Confidence 4799999999999999999999 99999999997643211100 000111110
Q ss_pred cCC---ccc---cCCCCCCC-CCC-CCCCCHHHHHHHHHHHHHHcC---CccccceeEEEEEEeC------CCCeEEEEE
Q 013435 85 LPK---QFC---QLPLMPFP-SNF-PTYPTKQQFLTYLETYTNHFG---LDPVFNTTVVNAEYDH------LSRLWRVKT 147 (443)
Q Consensus 85 ~~~---~~~---~~~~~~~~-~~~-~~~~~~~~~~~~l~~~~~~~~---~~v~~~~~V~~i~~~~------~~~~~~v~~ 147 (443)
.+. ... .++..... ..+ .....+..+...+.+.+.+.+ +.++++++|++++.++ +...++++.
T Consensus 88 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~ 167 (665)
T 1pn0_A 88 NPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTL 167 (665)
T ss_dssp EECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEE
T ss_pred eCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEE
Confidence 000 000 00000000 011 112467888889988888876 8999999999998864 113466665
Q ss_pred eec---------------------------------------CCCcEEEEEeCEEEEccCCCCC
Q 013435 148 QQG---------------------------------------LKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 148 ~~~---------------------------------------~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.+. ..++..+++||+||.|.|.+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~ 231 (665)
T 1pn0_A 168 RYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSW 231 (665)
T ss_dssp EECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCH
T ss_pred EecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCH
Confidence 542 2334478999999999998774
No 148
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=98.84 E-value=8.1e-09 Score=100.15 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=75.7
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc---CCCC-------ce--------------------eee-
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL---KTYD-------RL--------------------RLH- 84 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~---~~~~-------~~--------------------~~~- 84 (443)
+|+||||||+|+++|..|+++|++|+|+|+.+.+...... ...+ .+ ...
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 82 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN 82 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence 6999999999999999999999999999997654211000 0000 00 000
Q ss_pred cCCccccCCC--CCCCCCCCC----CCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEE
Q 013435 85 LPKQFCQLPL--MPFPSNFPT----YPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVY 158 (443)
Q Consensus 85 ~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i 158 (443)
.......... .+....... ...+..+.+.+.+ ..+..++++++|++++..++ +.++|+..+| .++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~---~~~~~v~~~~~v~~~~~~~~-~~v~v~~~dG-----~~~ 153 (412)
T 4hb9_A 83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNK---GLANTIQWNKTFVRYEHIEN-GGIKIFFADG-----SHE 153 (412)
T ss_dssp TTSCEEEC--------------CEEEEEHHHHHHHHHT---TCTTTEECSCCEEEEEECTT-SCEEEEETTS-----CEE
T ss_pred CCcceecccCCccccccccccccceEeeHHHHHHHHHh---hccceEEEEEEEEeeeEcCC-CeEEEEECCC-----CEE
Confidence 0000000000 000000000 0123344443332 33446889999999987664 5677888876 689
Q ss_pred EeCEEEEccCCCCCC
Q 013435 159 LCQWLIVATGENAEE 173 (443)
Q Consensus 159 ~a~~vIiAtG~~~~p 173 (443)
+||+||.|.|.+|.-
T Consensus 154 ~adlvVgADG~~S~v 168 (412)
T 4hb9_A 154 NVDVLVGADGSNSKV 168 (412)
T ss_dssp EESEEEECCCTTCHH
T ss_pred EeeEEEECCCCCcch
Confidence 999999999987753
No 149
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=98.84 E-value=5.5e-08 Score=98.49 Aligned_cols=140 Identities=17% Similarity=0.144 Sum_probs=87.9
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCC--C----Cce----ee-ecCCcc-----------
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKT--Y----DRL----RL-HLPKQF----------- 89 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~--~----~~~----~~-~~~~~~----------- 89 (443)
...+||+|||+|++|+++|..|++.|.+|+|+|+.+.+||...... . ... .. +....+
T Consensus 124 ~~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~ 203 (572)
T 1d4d_A 124 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNI 203 (572)
T ss_dssp CEECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence 3467999999999999999999999999999999987776432110 0 000 00 000000
Q ss_pred ----------------------ccCCC--------CCCCCCC---CCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEE
Q 013435 90 ----------------------CQLPL--------MPFPSNF---PTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEY 136 (443)
Q Consensus 90 ----------------------~~~~~--------~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~ 136 (443)
...++ ..++... ........+...+.+.+.+.+++++++++|+++..
T Consensus 204 ~~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~ 283 (572)
T 1d4d_A 204 NDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILE 283 (572)
T ss_dssp SCHHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEE
T ss_pred CCHHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEE
Confidence 00000 0000000 01123678888899999999999999999999976
Q ss_pred eCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 137 DHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+++...+-|...+ ..++...+.||.||+|||.++.
T Consensus 284 ~~~g~v~GV~~~~-~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 284 DASGKVTGVLVKG-EYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp C--CCEEEEEEEE-TTTEEEEEECSEEEECCCCCTT
T ss_pred CCCCeEEEEEEEe-CCCcEEEEEcCEEEEeCCCCcc
Confidence 5412333354443 1224458999999999997654
No 150
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.83 E-value=2.2e-08 Score=92.81 Aligned_cols=107 Identities=19% Similarity=0.296 Sum_probs=67.5
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCC-cccccCC-CCceeeecCC-ccccCCCCCCCC--CCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIA-SLWQLKT-YDRLRLHLPK-QFCQLPLMPFPS--NFPTY 104 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~g-g~w~~~~-~~~~~~~~~~-~~~~~~~~~~~~--~~~~~ 104 (443)
...+||+|||||++|+++|..|++. |.+|+|+|+.+..| +.|.... +......... ....-....+.. .+...
T Consensus 63 ~~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~ 142 (326)
T 2gjc_A 63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVV 142 (326)
T ss_dssp TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEE
T ss_pred cCcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEE
Confidence 3456999999999999999999999 99999999988776 4664321 2212111110 000000111110 00011
Q ss_pred CCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeC
Q 013435 105 PTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDH 138 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~ 138 (443)
....++...+.+.+.+. +++++.+++|+++..+.
T Consensus 143 ~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~ 177 (326)
T 2gjc_A 143 KHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRP 177 (326)
T ss_dssp SCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECC
T ss_pred cchHHHHHHHHHHHHHhcCcEEEecceeeeeeecc
Confidence 24567777777777664 88899999999998764
No 151
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=98.82 E-value=2.7e-08 Score=100.62 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
....+...+...+.+.|+.++.+++|+++..+++ ..|.|++.+...++..+++||.||+|+|.++.
T Consensus 186 ~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~-~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~ 251 (571)
T 2rgh_A 186 NDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGD-QIVGVKARDLLTDEVIEIKAKLVINTSGPWVD 251 (571)
T ss_dssp CHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETT-EEEEEEEEETTTCCEEEEEBSCEEECCGGGHH
T ss_pred chHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCC-EEEEEEEEEcCCCCEEEEEcCEEEECCChhHH
Confidence 3455666666777888999999999999998763 33556655422233358999999999998653
No 152
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=98.80 E-value=6.3e-09 Score=104.82 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
..+..+..++.+.+.+.|+.++.+ +|+++...++...+.|++.++ .+++||+||+|+|.++.
T Consensus 162 i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g-----~~i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 162 FDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEG-----RTLEADLFIDCSGMRGL 223 (538)
T ss_dssp ECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTS-----CEECCSEEEECCGGGCC
T ss_pred EeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCC-----cEEEeCEEEECCCCchh
Confidence 356788889999888889999888 799998865323345666554 47999999999997654
No 153
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=98.79 E-value=3.2e-09 Score=103.06 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=77.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcc---------cccCCCCc----eee----------ec--C
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASL---------WQLKTYDR----LRL----------HL--P 86 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~---------w~~~~~~~----~~~----------~~--~ 86 (443)
.+||+|||||++|+++|+.|++. |.+|+|+|+....++. |....+.. +.. .. .
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 115 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKT 115 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSCC
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCCC
Confidence 47999999999999999999999 9999999997643321 11111110 000 00 0
Q ss_pred CccccCC------CC-------------CC---------CCC-------CCCCCCHHHHHHHHHHHHHHcCCccccceeE
Q 013435 87 KQFCQLP------LM-------------PF---------PSN-------FPTYPTKQQFLTYLETYTNHFGLDPVFNTTV 131 (443)
Q Consensus 87 ~~~~~~~------~~-------------~~---------~~~-------~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V 131 (443)
..+.... .. .+ +.. .........+...+.+.+.+.|++++++++|
T Consensus 116 ~~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v 195 (405)
T 3c4n_A 116 LEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRA 195 (405)
T ss_dssp CCEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEE
T ss_pred CcEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 0000000 00 00 000 0112345668888888888889999999999
Q ss_pred E---------EEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 132 V---------NAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 132 ~---------~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
+ ++..++ +.|.|++.+ ..++||.||+|+|.++
T Consensus 196 ~~~~g~~~~~~i~~~~--~~v~v~~~~------g~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 196 ELVPGGVRLHRLTVTN--THQIVVHET------RQIRAGVIIVAAGAAG 236 (405)
T ss_dssp EEETTEEEEECBCC---------CBCC------EEEEEEEEEECCGGGH
T ss_pred EeccccccccceEeeC--CeEEEEECC------cEEECCEEEECCCccH
Confidence 8 776554 445555443 4799999999999865
No 154
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.77 E-value=7.2e-09 Score=103.78 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
..+..+...+.+.+.+.|++++.+ +|+++..+++...+.|++.++ .+++||+||.|+|.++.
T Consensus 170 ~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g-----~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 170 FDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQH-----GEISGDLFVDCTGFRGL 231 (511)
T ss_dssp ECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSS-----CEEECSEEEECCGGGCC
T ss_pred EcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCC-----CEEEcCEEEECCCcchH
Confidence 467889999999888899999999 899998865323355666654 47999999999998664
No 155
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=98.75 E-value=2.1e-08 Score=100.08 Aligned_cols=39 Identities=33% Similarity=0.511 Sum_probs=32.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
|++|+|||||++||+||..|+++|++|+|+|+++.+||.
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~ 39 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGR 39 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC------
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCc
Confidence 578999999999999999999999999999999999883
No 156
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=98.75 E-value=2e-08 Score=98.26 Aligned_cols=40 Identities=33% Similarity=0.424 Sum_probs=36.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
++||+|||||++|+++|+.|++.|.+|+|+|+.+.+||..
T Consensus 1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 40 (431)
T 3k7m_X 1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRA 40 (431)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTC
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCee
Confidence 4799999999999999999999999999999988887743
No 157
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=98.74 E-value=1.4e-08 Score=102.59 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHc-CCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 105 PTKQQFLTYLETYTNHF-GLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~-~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
..+..+..++.+.+.+. |++++++ +|+++...++...+.|++.++ .+++||.||+|+|.++.
T Consensus 191 ~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G-----~~i~ad~vI~A~G~~S~ 253 (550)
T 2e4g_A 191 FDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATG-----RVFDADLFVDCSGFRGL 253 (550)
T ss_dssp ECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTS-----CEEECSEEEECCGGGCC
T ss_pred EcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCC-----CEEECCEEEECCCCchh
Confidence 46788999999999888 9999999 899998865323355666554 57999999999997654
No 158
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=98.72 E-value=1.3e-07 Score=95.81 Aligned_cols=139 Identities=14% Similarity=0.083 Sum_probs=85.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc-c-cccC-------C--CCceee---e---cCCcc-------
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS-L-WQLK-------T--YDRLRL---H---LPKQF------- 89 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg-~-w~~~-------~--~~~~~~---~---~~~~~------- 89 (443)
.+||+|||||++|+++|..|++.|.+|+|+|+....+| + |.+. . .+.... + .....
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~ 86 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 46999999999999999999999999999999875532 1 1110 0 000000 0 00000
Q ss_pred ---------------ccCCCCCCCC------CCCC-----------------CCCHHHHHHHHHHHHHHcCCccccceeE
Q 013435 90 ---------------CQLPLMPFPS------NFPT-----------------YPTKQQFLTYLETYTNHFGLDPVFNTTV 131 (443)
Q Consensus 90 ---------------~~~~~~~~~~------~~~~-----------------~~~~~~~~~~l~~~~~~~~~~v~~~~~V 131 (443)
...++..... ...+ -.+...+...+.+.+.+.+++++.++.|
T Consensus 87 ~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v 166 (588)
T 2wdq_A 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (588)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCEEEETEEE
T ss_pred HHHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCCEEEeCcEE
Confidence 0011100000 0000 0124677888888888889999999999
Q ss_pred EEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 132 VNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 132 ~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+++..+++...+-|...+...++...+.|+.||+|||.++.
T Consensus 167 ~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~ 207 (588)
T 2wdq_A 167 LDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_dssp EEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred EEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcc
Confidence 99987522233345544322334468999999999998654
No 159
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=98.72 E-value=3e-08 Score=96.78 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=35.9
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
+||+|||||++|+++|+.|++.|.+|+|+|+.+.+||..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~ 39 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRF 39 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCce
Confidence 489999999999999999999999999999998887643
No 160
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=98.70 E-value=1.7e-07 Score=95.30 Aligned_cols=139 Identities=16% Similarity=0.119 Sum_probs=83.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCc--ccccCC----C---Cceee---e---cCCc--------
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIAS--LWQLKT----Y---DRLRL---H---LPKQ-------- 88 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg--~w~~~~----~---~~~~~---~---~~~~-------- 88 (443)
.+||+|||||++|+++|..|++.| .+|+|+|+....++ .|.+.. . +.... + ....
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~ 84 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVD 84 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 479999999999999999999999 99999999764332 111100 0 00000 0 0000
Q ss_pred --------------cccCCCCCCC------CCCCC----------CCCHHHHHHHHHHHHHHcC-CccccceeEEEEEEe
Q 013435 89 --------------FCQLPLMPFP------SNFPT----------YPTKQQFLTYLETYTNHFG-LDPVFNTTVVNAEYD 137 (443)
Q Consensus 89 --------------~~~~~~~~~~------~~~~~----------~~~~~~~~~~l~~~~~~~~-~~v~~~~~V~~i~~~ 137 (443)
....++.... ..+.+ -.+...+...+.+.+.+.+ ++++.++.|+++..+
T Consensus 85 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~ 164 (602)
T 1kf6_A 85 YFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD 164 (602)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe
Confidence 0001110000 00000 0124677788888877777 889999999999876
Q ss_pred CCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCC
Q 013435 138 HLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEE 173 (443)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p 173 (443)
++ ...-|...+...++...+.|+.||+|||.++..
T Consensus 165 ~g-~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~ 199 (602)
T 1kf6_A 165 DG-HVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 199 (602)
T ss_dssp TT-EEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred CC-EEEEEEEEEcCCCcEEEEEcCeEEECCCCCccc
Confidence 52 222233332223344589999999999987653
No 161
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=98.68 E-value=2.3e-08 Score=91.15 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=38.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL 75 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 75 (443)
|-+||+||||||+|+++|..|+++|++|+|+|+.+.+||.+..
T Consensus 1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~ 43 (336)
T 3kkj_A 1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSS 43 (336)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccc
Confidence 3579999999999999999999999999999999999986654
No 162
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=98.68 E-value=6.1e-08 Score=102.69 Aligned_cols=58 Identities=19% Similarity=0.084 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCe-EEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 106 TKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRL-WRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~-~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
....+...+.+.+.+.|++++.+++|+++...+ +. +.|.+.+ .+++||.||+|+|.++
T Consensus 149 ~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~--~~v~~V~t~~------G~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 149 SAARAVQLLIKRTESAGVTYRGSTTVTGIEQSG--GRVTGVQTAD------GVIPADIVVSCAGFWG 207 (830)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETT------EEEECSEEEECCGGGH
T ss_pred cHHHHHHHHHHHHHHcCCEEECCceEEEEEEeC--CEEEEEEECC------cEEECCEEEECCccch
Confidence 567788888888888999999999999999876 44 3466554 4799999999999865
No 163
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=98.66 E-value=2.7e-07 Score=93.85 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=85.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc--------ccccCC---CCceeeec------C----C----
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS--------LWQLKT---YDRLRLHL------P----K---- 87 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg--------~w~~~~---~~~~~~~~------~----~---- 87 (443)
..+||||||||++|+++|..|++.|.+|+|+|+....++ .+.... .+...... . .
T Consensus 17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v 96 (621)
T 2h88_A 17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAI 96 (621)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 347999999999999999999999999999999764332 221100 00100000 0 0
Q ss_pred ------------cc--ccCCCCCCCC------CCC------------------CCCCHHHHHHHHHHHHHHcCCccccce
Q 013435 88 ------------QF--CQLPLMPFPS------NFP------------------TYPTKQQFLTYLETYTNHFGLDPVFNT 129 (443)
Q Consensus 88 ------------~~--~~~~~~~~~~------~~~------------------~~~~~~~~~~~l~~~~~~~~~~v~~~~ 129 (443)
.+ ..+++..... .+. .-.+...+...+.+.+.+.+++++.++
T Consensus 97 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~i~~~~ 176 (621)
T 2h88_A 97 HYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEY 176 (621)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCEEEETE
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCCEEEEce
Confidence 00 0111100000 000 001356788888888888899999999
Q ss_pred eEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 130 TVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 130 ~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
.|+++..+++ ...-|...+...++...+.|+.||+|||.++.
T Consensus 177 ~v~~Li~~~g-~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~ 218 (621)
T 2h88_A 177 FALDLLMENG-ECRGVIALCIEDGTIHRFRAKNTVIATGGYGR 218 (621)
T ss_dssp EEEEEEEETT-EEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred EEEEEEEECC-EEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence 9999987652 22234443322344468999999999998664
No 164
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=98.65 E-value=3.2e-08 Score=96.49 Aligned_cols=39 Identities=33% Similarity=0.540 Sum_probs=36.0
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
+||+|||||++|+++|++|++.|.+|+|+|+++.+||..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~ 39 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRF 39 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcee
Confidence 379999999999999999999999999999998888743
No 165
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=98.65 E-value=4.3e-07 Score=93.01 Aligned_cols=65 Identities=9% Similarity=0.093 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 107 KQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
...+...+.+.+.+.+++++.++.|+++..+++ ...-|...+...++...+.|+.||+|||.++.
T Consensus 157 G~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g-~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~ 221 (660)
T 2bs2_A 157 GHTMLFAVANECLKLGVSIQDRKEAIALIHQDG-KCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR 221 (660)
T ss_dssp HHHHHHHHHHHHHHHTCEEECSEEEEEEEEETT-EEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred HHHHHHHHHHHHHhCCCEEEECcEEEEEEecCC-EEEEEEEEECCCCcEEEEEcCEEEEccCcchh
Confidence 567888888888888999999999999987542 22224443322334467999999999998654
No 166
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=98.62 E-value=9.8e-08 Score=95.78 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHH-cCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 105 PTKQQFLTYLETYTNH-FGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
..+..+..++.+.+.+ .|++++.+ +|++++..++...+.|++.++ .+++||+||.|+|.++.
T Consensus 172 ~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g-----~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 172 LNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQN-----GEISGQLFIDCTGAKSL 234 (526)
T ss_dssp ECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSS-----CEEECSEEEECSGGGCC
T ss_pred EcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCC-----CEEEcCEEEECCCcchH
Confidence 3678889999999888 89999888 599998865323335655543 35999999999998664
No 167
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=98.60 E-value=1.3e-07 Score=94.85 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=76.4
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccCCC----C---ce-------------eeec-----
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL--WQLKTY----D---RL-------------RLHL----- 85 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~--w~~~~~----~---~~-------------~~~~----- 85 (443)
..+||+|||||++|+++|..|++ |.+|+|+|+....+|. |..... . .. .++.
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~ds~~~~~~d~l~~g~g~~d~~~v~~ 85 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEF 85 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCChhhcCCCEEEecCCCCCHHHHHHHHHHhhcccCCHHHHHH
Confidence 34799999999999999999999 9999999998865542 111000 0 00 0000
Q ss_pred -----CCc---c--ccCCCCCCC----CC-C-----CC------C----CCHHHHHHHHHHHHHH-cCCccccceeEEEE
Q 013435 86 -----PKQ---F--CQLPLMPFP----SN-F-----PT------Y----PTKQQFLTYLETYTNH-FGLDPVFNTTVVNA 134 (443)
Q Consensus 86 -----~~~---~--~~~~~~~~~----~~-~-----~~------~----~~~~~~~~~l~~~~~~-~~~~v~~~~~V~~i 134 (443)
+.. + ..+++.... .. + .+ + .+...+...+.+.+.+ .+++++.++.|+++
T Consensus 86 ~~~~~~~~i~~l~~~Gv~f~~~~~~~~~g~~~~~~~gg~~~~r~~~~~d~~g~~l~~~L~~~~~~~~gv~i~~~~~v~~L 165 (540)
T 1chu_A 86 VASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDL 165 (540)
T ss_dssp HHHHHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECSEEEEEE
T ss_pred HHHhHHHHHHHHHHcCCCcccCcccCcCCccccccccccccCeEEEeCCCCHHHHHHHHHHHHHcCCCCEEEeCcEEEEE
Confidence 000 0 001100000 00 0 00 0 1223445555666666 68999999999999
Q ss_pred EEeCCC------CeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 135 EYDHLS------RLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 135 ~~~~~~------~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
..+++. ..+-|...+...++...+.|+.||+|||.++.
T Consensus 166 ~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 209 (540)
T 1chu_A 166 IVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASK 209 (540)
T ss_dssp EEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGG
T ss_pred EEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 873321 22335554322334468999999999998654
No 168
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.59 E-value=1.7e-07 Score=92.37 Aligned_cols=100 Identities=20% Similarity=0.217 Sum_probs=79.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||++|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~---------------------------------~~~~~~~~~ 213 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP---------------------------------TMDLEVSRA 213 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT---------------------------------TSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc---------------------------------ccCHHHHHH
Confidence 46799999999999999999999999999998764310 012566777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.|++++++++|++++..+ +.+.+++.++ .++.+|.||+|+|. +|+.
T Consensus 214 l~~~l~~~Gv~i~~~~~V~~i~~~~--~~v~v~~~~g-----~~i~~D~vv~A~G~--~p~~ 266 (455)
T 2yqu_A 214 AERVFKKQGLTIRTGVRVTAVVPEA--KGARVELEGG-----EVLEADRVLVAVGR--RPYT 266 (455)
T ss_dssp HHHHHHHHTCEEECSCCEEEEEEET--TEEEEEETTS-----CEEEESEEEECSCE--EECC
T ss_pred HHHHHHHCCCEEEECCEEEEEEEeC--CEEEEEECCC-----eEEEcCEEEECcCC--CcCC
Confidence 7777788899999999999999876 5566666543 57999999999994 4443
No 169
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=98.58 E-value=4.6e-08 Score=96.68 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=36.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC------CCEEEEecCCCCCcc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG------VPSLILERANCIASL 72 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g------~~v~iie~~~~~gg~ 72 (443)
++||+|||||++|+++|++|+++| .+|+|+|+.+.+||.
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~ 49 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGK 49 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCce
Confidence 579999999999999999999999 999999999888863
No 170
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=98.57 E-value=3.4e-07 Score=88.01 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=79.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ....++.+.
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------~-~~~~~~~~~ 192 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP-------------------------------G-LLHPAAAKA 192 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------T-TSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh-------------------------------c-ccCHHHHHH
Confidence 67899999999999999999999999999999764311 0 012567778
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.|++++.+++|.+++..+ +.+.|.+.++ .++.+|.||+|+|.
T Consensus 193 l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g-----~~i~~d~vv~a~G~ 241 (384)
T 2v3a_A 193 VQAGLEGLGVRFHLGPVLASLKKAG--EGLEAHLSDG-----EVIPCDLVVSAVGL 241 (384)
T ss_dssp HHHHHHTTTCEEEESCCEEEEEEET--TEEEEEETTS-----CEEEESEEEECSCE
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecC--CEEEEEECCC-----CEEECCEEEECcCC
Confidence 8888888899999999999998766 5666777654 67999999999994
No 171
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=98.55 E-value=1.2e-07 Score=93.93 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=36.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCC--CEEEEecCCCCCccc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGV--PSLILERANCIASLW 73 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w 73 (443)
++||+|||||++|+++|++|++.|. +|+|+|+.+.+||..
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~ 43 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWI 43 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTC
T ss_pred CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCce
Confidence 5799999999999999999999999 999999998887743
No 172
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=98.53 E-value=3.7e-07 Score=90.07 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=81.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~ 215 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP---------------------------------QGDPETAAL 215 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------------------------------TSCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc---------------------------------ccCHHHHHH
Confidence 46899999999999999999999999999999764310 012567778
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.|++++++++|++++..+ +.+.++..+...++..++.+|.||+|+|. .|+.
T Consensus 216 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vv~a~G~--~p~~ 273 (464)
T 2eq6_A 216 LRRALEKEGIRVRTKTKAVGYEKKK--DGLHVRLEPAEGGEGEEVVVDKVLVAVGR--KPRT 273 (464)
T ss_dssp HHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTCCSCEEEEESEEEECSCE--EESC
T ss_pred HHHHHHhcCCEEEcCCEEEEEEEeC--CEEEEEEeecCCCceeEEEcCEEEECCCc--ccCC
Confidence 8888888899999999999998776 55666665211123358999999999994 4444
No 173
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=98.53 E-value=9.4e-07 Score=90.60 Aligned_cols=145 Identities=15% Similarity=0.092 Sum_probs=82.4
Q ss_pred hcCCCeEEECCCHHHHHHHHHHH---H-cCCCEEEEecCCCCCc-cccc-----CC-CCcee----eecCCccc------
Q 013435 32 IMVPGPVIVGAGPSGLATAACLT---E-KGVPSLILERANCIAS-LWQL-----KT-YDRLR----LHLPKQFC------ 90 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~---~-~g~~v~iie~~~~~gg-~w~~-----~~-~~~~~----~~~~~~~~------ 90 (443)
...+||||||||++|+++|..|+ + .|.+|+|+|+....++ .|.. +. +.... -+.+..+.
T Consensus 20 ~~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~~s~~~a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~ 99 (643)
T 1jnr_A 20 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLD 99 (643)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHHH
T ss_pred eccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCCCCcceecccccccchhhHHHhcCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999 6 8999999999874321 1211 00 10000 00000000
Q ss_pred --cC----------------------CCCCCCCCCCC--CC--------CHHHHHHHHHHHHHHc-CC-ccccceeEEEE
Q 013435 91 --QL----------------------PLMPFPSNFPT--YP--------TKQQFLTYLETYTNHF-GL-DPVFNTTVVNA 134 (443)
Q Consensus 91 --~~----------------------~~~~~~~~~~~--~~--------~~~~~~~~l~~~~~~~-~~-~v~~~~~V~~i 134 (443)
.+ ...++.....+ ++ ....+...+...+.+. ++ +++.++.|+++
T Consensus 100 g~~l~d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L 179 (643)
T 1jnr_A 100 MMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFEL 179 (643)
T ss_dssp TTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHHHHHCGGGEECSEEEEEE
T ss_pred hcCcCcHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccCCCccccCCCcHHHHHHHHHHHHhcCCCcEEEecCEEEEE
Confidence 00 01111100000 11 1234556666666666 89 89999999999
Q ss_pred EEeCCC-CeE-EEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 135 EYDHLS-RLW-RVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 135 ~~~~~~-~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
..+++. +.+ -|...+...++...+.|+.||+|||.++....|
T Consensus 180 ~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~y~~ 223 (643)
T 1jnr_A 180 LKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRP 223 (643)
T ss_dssp EECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCC
T ss_pred EEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccccccC
Confidence 876520 032 233322223344579999999999987653333
No 174
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=98.52 E-value=6.4e-07 Score=89.54 Aligned_cols=100 Identities=16% Similarity=0.074 Sum_probs=81.4
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
.+.+++|||||+.|+.+|..+.+.|.+|+|+++...+. . ...++..
T Consensus 222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~--------------------------------~--~D~ei~~ 267 (542)
T 4b1b_A 222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR--------------------------------G--FDQQCAV 267 (542)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST--------------------------------T--SCHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc--------------------------------c--cchhHHH
Confidence 35689999999999999999999999999998754321 0 1267888
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
.+....++.++.++.+..+..++..+ +.+.|...++ ..+.+|.|++|+| -+|+.
T Consensus 268 ~l~~~l~~~gi~~~~~~~v~~~~~~~--~~~~v~~~~~-----~~~~~D~vLvAvG--R~Pnt 321 (542)
T 4b1b_A 268 KVKLYMEEQGVMFKNGILPKKLTKMD--DKILVEFSDK-----TSELYDTVLYAIG--RKGDI 321 (542)
T ss_dssp HHHHHHHHTTCEEEETCCEEEEEEET--TEEEEEETTS-----CEEEESEEEECSC--EEESC
T ss_pred HHHHHHHhhcceeecceEEEEEEecC--CeEEEEEcCC-----CeEEEEEEEEccc--ccCCc
Confidence 88888899999999999999999887 6766777654 6788999999999 34443
No 175
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=98.52 E-value=2.3e-07 Score=91.10 Aligned_cols=102 Identities=21% Similarity=0.286 Sum_probs=78.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|++|+.+|..|.+.|.+|+++++.+.+... + ...++.+
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~-~~~~~~~ 195 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV-------------------------------Y-LDKEFTD 195 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-------------------------------T-CCHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc-------------------------------c-CCHHHHH
Confidence 5689999999999999999999999999999997643210 0 1256778
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
.+.+.+++.|+++++++.|++++..+ ..+.+.++ + .++.+|.||+|+| ..|+.+
T Consensus 196 ~l~~~l~~~gv~i~~~~~v~~i~~~~--~v~~v~~~-~-----~~i~~d~vi~a~G--~~p~~~ 249 (447)
T 1nhp_A 196 VLTEEMEANNITIATGETVERYEGDG--RVQKVVTD-K-----NAYDADLVVVAVG--VRPNTA 249 (447)
T ss_dssp HHHHHHHTTTEEEEESCCEEEEECSS--BCCEEEES-S-----CEEECSEEEECSC--EEESCG
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEccC--cEEEEEEC-C-----CEEECCEEEECcC--CCCChH
Confidence 88888888899999999999998642 23335443 2 5799999999999 455433
No 176
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.51 E-value=6.7e-07 Score=88.04 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=79.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~ 216 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-------------------------------G--FEKQMAAI 216 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------T--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-------------------------------c--cCHHHHHH
Confidence 46899999999999999999999999999999764310 0 12567777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.|++++.+++|.+++..+ +.+.++... .++..++.+|.||+|+|. +|+.
T Consensus 217 l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~--~g~~~~~~~D~vv~a~G~--~p~~ 272 (455)
T 1ebd_A 217 IKKRLKKKGVEVVTNALAKGAEERE--DGVTVTYEA--NGETKTIDADYVLVTVGR--RPNT 272 (455)
T ss_dssp HHHHHHHTTCEEEESEEEEEEEEET--TEEEEEEEE--TTEEEEEEESEEEECSCE--EESC
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeC--CeEEEEEEe--CCceeEEEcCEEEECcCC--Cccc
Confidence 8888888899999999999998765 455566542 112268999999999994 4443
No 177
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.51 E-value=4e-07 Score=93.16 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHc--CCccccceeEEEEEEeCC--CCeEEEEEeecCCCcEEEEEeCEEEEccCCCCC
Q 013435 107 KQQFLTYLETYTNHF--GLDPVFNTTVVNAEYDHL--SRLWRVKTQQGLKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 107 ~~~~~~~l~~~~~~~--~~~v~~~~~V~~i~~~~~--~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
...+...+.+.+.+. +++++.++.|+++..+++ ....-|...+...++...+.|+.||+|||..+.
T Consensus 165 G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~ 234 (662)
T 3gyx_A 165 GESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVN 234 (662)
T ss_dssp ETSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccc
Confidence 345666677777776 899999999998877653 122223333323345578999999999998665
No 178
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=98.50 E-value=8.3e-07 Score=87.94 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=80.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+... ...++.++
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------------~~~~~~~~ 229 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS---------------------------------MDGEVAKA 229 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS---------------------------------SCHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc---------------------------------cCHHHHHH
Confidence 468999999999999999999999999999998743210 12567778
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.|++++++++|++++..++.+.+.+...+...++..++.+|.||+|+| .+|+.
T Consensus 230 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G--~~p~~ 289 (478)
T 1v59_A 230 TQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVG--RRPYI 289 (478)
T ss_dssp HHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSC--EEECC
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCC--CCcCC
Confidence 8888888999999999999998731115556666521112226899999999999 44443
No 179
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=98.49 E-value=2e-07 Score=91.56 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEE---------------eCCCCeEEEEEeecCCCcEEEE--EeCEEEEcc
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEY---------------DHLSRLWRVKTQQGLKQEETVY--LCQWLIVAT 167 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~---------------~~~~~~~~v~~~~~~~~~~~~i--~a~~vIiAt 167 (443)
.....+...+.+.+.+.|++++.+++|+++.. .++ ..+.|.+.+ .++ .||.||+|+
T Consensus 178 ~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~-~v~~V~t~~------g~i~~~Ad~VV~At 250 (448)
T 3axb_A 178 LDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEA-RASAAVLSD------GTRVEVGEKLVVAA 250 (448)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCE-EEEEEEETT------SCEEEEEEEEEECC
T ss_pred EcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCC-ceEEEEeCC------CEEeecCCEEEECC
Confidence 35567888888888889999999999999987 331 234566544 257 999999999
Q ss_pred CCCCC
Q 013435 168 GENAE 172 (443)
Q Consensus 168 G~~~~ 172 (443)
|.++.
T Consensus 251 G~~s~ 255 (448)
T 3axb_A 251 GVWSN 255 (448)
T ss_dssp GGGHH
T ss_pred CcCHH
Confidence 98654
No 180
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.46 E-value=7.2e-07 Score=87.93 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=79.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~ 212 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF-------------------------------Q--FDPLLSAT 212 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T--SCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc-------------------------------c--cCHHHHHH
Confidence 46899999999999999999999999999998764310 0 12456677
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEE-EEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEET-VYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~-~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.+++++.+++|++++..+ +.+.|++.++ . ++.+|.||+|+|. +|+.
T Consensus 213 l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~G-----~~~i~~D~vv~a~G~--~p~~ 266 (463)
T 2r9z_A 213 LAENMHAQGIETHLEFAVAALERDA--QGTTLVAQDG-----TRLEGFDSVIWAVGR--APNT 266 (463)
T ss_dssp HHHHHHHTTCEEESSCCEEEEEEET--TEEEEEETTC-----CEEEEESEEEECSCE--EESC
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeC--CeEEEEEeCC-----cEEEEcCEEEECCCC--CcCC
Confidence 7788888899999999999998765 4466777654 4 7999999999994 4443
No 181
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=98.46 E-value=1.6e-06 Score=86.21 Aligned_cols=105 Identities=18% Similarity=0.194 Sum_probs=82.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~d~~~~~~ 244 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG---------------------------------GMDGEVAKQ 244 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS---------------------------------SSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc---------------------------------cCCHHHHHH
Confidence 46799999999999999999999999999998764310 012667777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.|++++.+++|.+++..+ +.+.+...+...++..++.+|.||+|+|. .|+.
T Consensus 245 l~~~l~~~gV~v~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~--~p~~ 302 (491)
T 3urh_A 245 LQRMLTKQGIDFKLGAKVTGAVKSG--DGAKVTFEPVKGGEATTLDAEVVLIATGR--KPST 302 (491)
T ss_dssp HHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTSCCCEEEEESEEEECCCC--EECC
T ss_pred HHHHHHhCCCEEEECCeEEEEEEeC--CEEEEEEEecCCCceEEEEcCEEEEeeCC--ccCC
Confidence 8888888899999999999999876 56667776533234468999999999994 4443
No 182
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.44 E-value=7.1e-07 Score=87.69 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=79.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~ 213 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-------------------------------S--FDPMISET 213 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-------------------------------h--hhHHHHHH
Confidence 46899999999999999999999999999998764310 0 12456777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.|++++++++|.+++..++ +.+.|++.++ .++.+|.||+|+|. +|+.
T Consensus 214 l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~v~~~~g-----~~i~~D~vv~a~G~--~p~~ 267 (450)
T 1ges_A 214 LVEVMNAEGPQLHTNAIPKAVVKNTD-GSLTLELEDG-----RSETVDCLIWAIGR--EPAN 267 (450)
T ss_dssp HHHHHHHHSCEEECSCCEEEEEECTT-SCEEEEETTS-----CEEEESEEEECSCE--EESC
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeCC-cEEEEEECCC-----cEEEcCEEEECCCC--CcCC
Confidence 78888888999999999999987642 3356776654 57999999999994 4443
No 183
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=98.42 E-value=6.6e-08 Score=92.93 Aligned_cols=119 Identities=15% Similarity=0.082 Sum_probs=74.5
Q ss_pred CeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCC---Cccc--ccCCCCc---eeee----cCCcc-----ccC--CC
Q 013435 36 GPVIVGAGPSGLATAACLTEK--GVPSLILERANCI---ASLW--QLKTYDR---LRLH----LPKQF-----CQL--PL 94 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~---gg~w--~~~~~~~---~~~~----~~~~~-----~~~--~~ 94 (443)
||+|||||++|+++|..|++. |.+|+|+|+.+.. |... ..+.... .... ..... ..+ ..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN 81 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence 799999999999999999999 9999999998765 2110 0000000 0000 00000 000 00
Q ss_pred CCCCCC--CC-CCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCC
Q 013435 95 MPFPSN--FP-TYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENA 171 (443)
Q Consensus 95 ~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~ 171 (443)
...... .. ....+.++.+.+.+.+.+.+++++++++|++++.. .+++||.||.|+|.+|
T Consensus 82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~------------------~~~~ad~vV~AdG~~S 143 (381)
T 3c4a_A 82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL------------------PLADYDLVVLANGVNH 143 (381)
T ss_dssp SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC------------------CGGGCSEEEECCGGGG
T ss_pred eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc------------------ccccCCEEEECCCCCc
Confidence 000000 00 12467889999999988889999999888655310 1257899999999876
Q ss_pred C
Q 013435 172 E 172 (443)
Q Consensus 172 ~ 172 (443)
.
T Consensus 144 ~ 144 (381)
T 3c4a_A 144 K 144 (381)
T ss_dssp G
T ss_pred h
Confidence 5
No 184
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=98.40 E-value=2.1e-06 Score=84.58 Aligned_cols=130 Identities=16% Similarity=0.083 Sum_probs=75.4
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCCcccccCCCCcee--eecCC---ccccCCCC--------CC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEK--GVPSLILERANCIASLWQLKTYDRLR--LHLPK---QFCQLPLM--------PF 97 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~--~~~~~---~~~~~~~~--------~~ 97 (443)
...+|+|||+|..|+.+|..|.+. +.+|+++++.+.+-.. . ...+. ...+. .+..++.. ..
T Consensus 226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~--~--~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 301 (463)
T 3s5w_A 226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPA--D--DSPFVNEVFAPKFTDLIYSREHAERERLLREYH 301 (463)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBC--C--CCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTG
T ss_pred CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCc--c--CCccchhccChhHHHHHhcCCHHHHHHHHHHhh
Confidence 356899999999999999999999 8899999997743110 0 00000 00000 00000000 00
Q ss_pred CCCCCCCCCHH---HHHHHH-H-HHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 98 PSNFPTYPTKQ---QFLTYL-E-TYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 98 ~~~~~~~~~~~---~~~~~l-~-~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
...+.. .... .+.+.+ . ......+++++.++.|++++..+ +.+.|++.+...++..++.+|.||+|||.
T Consensus 302 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~ 375 (463)
T 3s5w_A 302 NTNYSV-VDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATA--QGIELALRDAGSGELSVETYDAVILATGY 375 (463)
T ss_dssp GGTSSC-BCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET--TEEEEEEEETTTCCEEEEEESEEEECCCE
T ss_pred ccCCCc-CCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC--CEEEEEEEEcCCCCeEEEECCEEEEeeCC
Confidence 000000 0111 111111 1 11112578889999999999877 77888887554456578999999999995
No 185
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=98.40 E-value=2e-06 Score=85.15 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=79.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+... . ...++.++
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------~--~~~~~~~~ 225 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV------------------------------G--IDMEISKN 225 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS------------------------------S--CCHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc------------------------------c--cCHHHHHH
Confidence 468999999999999999999999999999997643100 0 12567778
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.|++++++++|++++..++ ..+.++..+...++..++.+|.||+|+|. +|+.
T Consensus 226 l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~i~~D~vv~a~G~--~p~~ 284 (474)
T 1zmd_A 226 FQRILQKQGFKFKLNTKVTGATKKSD-GKIDVSIEAASGGKAEVITCDVLLVCIGR--RPFT 284 (474)
T ss_dssp HHHHHHHTTCEEECSEEEEEEEECTT-SCEEEEEEETTSCCCEEEEESEEEECSCE--EECC
T ss_pred HHHHHHHCCCEEEeCceEEEEEEcCC-ceEEEEEEecCCCCceEEEcCEEEECcCC--CcCC
Confidence 88888889999999999999987652 22556543211112268999999999994 4443
No 186
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=98.40 E-value=1.4e-06 Score=84.55 Aligned_cols=98 Identities=24% Similarity=0.312 Sum_probs=79.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .....++.++
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~--------------------------------~~~~~~~~~~ 199 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA--------------------------------RVAGEALSEF 199 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT--------------------------------TTSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh--------------------------------hhcCHHHHHH
Confidence 67899999999999999999999999999999764310 0123677888
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+..++.|+++++++.|.+++..++ ....|.+.++ ..+.||.||+|+|.
T Consensus 200 l~~~l~~~GV~i~~~~~v~~i~~~~~-~v~~v~l~dG-----~~i~aD~Vv~a~G~ 249 (415)
T 3lxd_A 200 YQAEHRAHGVDLRTGAAMDCIEGDGT-KVTGVRMQDG-----SVIPADIVIVGIGI 249 (415)
T ss_dssp HHHHHHHTTCEEEETCCEEEEEESSS-BEEEEEESSS-----CEEECSEEEECSCC
T ss_pred HHHHHHhCCCEEEECCEEEEEEecCC-cEEEEEeCCC-----CEEEcCEEEECCCC
Confidence 88888899999999999999987652 2234677665 68999999999994
No 187
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=98.39 E-value=1.6e-06 Score=85.64 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=77.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ...++.+.
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~---~~~~~~~~ 221 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF-------------------------------R---EDPAIGEA 221 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------------------T---SCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC-------------------------------C---CCHHHHHH
Confidence 4689999999999999999999999999999876431 1 12567778
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.|++++.+++|++++..+ ..+.|.+.. .++.+|.||+|+|.
T Consensus 222 l~~~l~~~Gv~i~~~~~v~~i~~~~--~~~~v~~~~------~~i~aD~Vv~a~G~ 269 (467)
T 1zk7_A 222 VTAAFRAEGIEVLEHTQASQVAHMD--GEFVLTTTH------GELRADKLLVATGR 269 (467)
T ss_dssp HHHHHHHTTCEEETTCCEEEEEEET--TEEEEEETT------EEEEESEEEECSCE
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEECC------cEEEcCEEEECCCC
Confidence 8888888899999999999998765 556666652 68999999999994
No 188
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.39 E-value=1.2e-06 Score=86.50 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=78.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~~~~~~~~ 223 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP---------------------------------TMDAEIRKQ 223 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST---------------------------------TSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc---------------------------------cccHHHHHH
Confidence 46899999999999999999999999999999764310 012567788
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.|++++.+++|.+++..+ +.+.++..+...++..++.+|.||+|+|.
T Consensus 224 l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 277 (470)
T 1dxl_A 224 FQRSLEKQGMKFKLKTKVVGVDTSG--DGVKLTVEPSAGGEQTIIEADVVLVSAGR 277 (470)
T ss_dssp HHHHHHHSSCCEECSEEEEEEECSS--SSEEEEEEESSSCCCEEEEESEEECCCCE
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEcC--CeEEEEEEecCCCcceEEECCEEEECCCC
Confidence 8888888999999999999998655 44556654211122367999999999994
No 189
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=98.37 E-value=2.4e-06 Score=83.93 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=80.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ....++.+
T Consensus 146 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~-~~d~~~~~ 193 (452)
T 3oc4_A 146 NSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLP-------------------------------K-YFDKEMVA 193 (452)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------T-TCCHHHHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccc-------------------------------c-cCCHHHHH
Confidence 356799999999999999999999999999999764310 0 01266778
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
.+.+.+++.|++++.++.|++++..+ +.+.|.+++ .++.+|.||+|+|. +|+..
T Consensus 194 ~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~v~~~~------g~i~aD~Vv~A~G~--~p~~~ 247 (452)
T 3oc4_A 194 EVQKSLEKQAVIFHFEETVLGIEETA--NGIVLETSE------QEISCDSGIFALNL--HPQLA 247 (452)
T ss_dssp HHHHHHHTTTEEEEETCCEEEEEECS--SCEEEEESS------CEEEESEEEECSCC--BCCCS
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEccC--CeEEEEECC------CEEEeCEEEECcCC--CCChH
Confidence 88888888999999999999998765 445566543 37999999999994 55443
No 190
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.37 E-value=1.9e-06 Score=89.75 Aligned_cols=40 Identities=35% Similarity=0.534 Sum_probs=37.1
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIAS 71 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg 71 (443)
...+||+|||||++|+++|..|++.|++|+|+|+.+.+||
T Consensus 334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg 373 (776)
T 4gut_A 334 YHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG 373 (776)
T ss_dssp GTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence 4568999999999999999999999999999999888877
No 191
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=98.37 E-value=8.9e-07 Score=85.86 Aligned_cols=97 Identities=20% Similarity=0.283 Sum_probs=78.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+... ....++.+.
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~--------------------------------~~~~~~~~~ 190 (410)
T 3ef6_A 143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR--------------------------------VLGRRIGAW 190 (410)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHH--------------------------------HHCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchh--------------------------------hcCHHHHHH
Confidence 578999999999999999999999999999987643100 012567777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+..++.|+++++++.|.+++.++ ....|++.++ .++.||.||+|+|.
T Consensus 191 l~~~l~~~GV~i~~~~~v~~i~~~~--~~~~v~~~dg-----~~i~aD~Vv~a~G~ 239 (410)
T 3ef6_A 191 LRGLLTELGVQVELGTGVVGFSGEG--QLEQVMASDG-----RSFVADSALICVGA 239 (410)
T ss_dssp HHHHHHHHTCEEECSCCEEEEECSS--SCCEEEETTS-----CEEECSEEEECSCE
T ss_pred HHHHHHHCCCEEEeCCEEEEEeccC--cEEEEEECCC-----CEEEcCEEEEeeCC
Confidence 8888888899999999999998754 4445777665 68999999999994
No 192
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.37 E-value=1.9e-06 Score=85.84 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=79.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~d~~~~~~ 222 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR---------------------------------KFDESVINV 222 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT---------------------------------TSCHHHHHH
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc---------------------------------ccchhhHHH
Confidence 46899999999999999999999999999998764310 012567778
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEE-EEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETV-YLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~-i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.|++++++++|++++..++ +.+.|.+.++ .+ +.+|.||+|+|. +|+.
T Consensus 223 l~~~l~~~gv~i~~~~~v~~i~~~~~-~~~~v~~~~g-----~~~~~~D~vi~a~G~--~p~~ 277 (500)
T 1onf_A 223 LENDMKKNNINIVTFADVVEIKKVSD-KNLSIHLSDG-----RIYEHFDHVIYCVGR--SPDT 277 (500)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEESST-TCEEEEETTS-----CEEEEESEEEECCCB--CCTT
T ss_pred HHHHHHhCCCEEEECCEEEEEEEcCC-ceEEEEECCC-----cEEEECCEEEECCCC--CcCC
Confidence 88888889999999999999987642 3355666554 34 999999999994 4443
No 193
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=98.36 E-value=4.4e-06 Score=82.87 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=79.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+. . ...++.+.
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~--------------------------------~--~d~~~~~~ 230 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR--------------------------------G--FDQQMSSL 230 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST--------------------------------T--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc--------------------------------c--CCHHHHHH
Confidence 4579999999999999999999999999998864210 0 12667788
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+..++.+++++.++.|.+++..++ +.+.++..+...++..++.+|.||+|+|.
T Consensus 231 l~~~l~~~gv~~~~~~~v~~i~~~~~-~~~~v~~~~~~~g~~~~~~~D~vi~a~G~ 285 (488)
T 3dgz_A 231 VTEHMESHGTQFLKGCVPSHIKKLPT-NQLQVTWEDHASGKEDTGTFDTVLWAIGR 285 (488)
T ss_dssp HHHHHHHTTCEEEETEEEEEEEECTT-SCEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEEeCCCCeeEEEECCEEEEcccC
Confidence 88888889999999999999987543 44557666543344457899999999994
No 194
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=98.36 E-value=2.3e-06 Score=84.34 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=79.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.++
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~ 217 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-------------------------------N--EDADVSKE 217 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T--SCHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------------------c--cCHHHHHH
Confidence 46899999999999999999999999999998764310 0 12567777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+..++.|++++++++|.+++..+ +.+.+...+ .++..++.+|.||+|+|. .|+.
T Consensus 218 l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~--~g~~~~~~~D~vv~a~G~--~p~~ 273 (464)
T 2a8x_A 218 IEKQFKKLGVTILTATKVESIADGG--SQVTVTVTK--DGVAQELKAEKVLQAIGF--APNV 273 (464)
T ss_dssp HHHHHHHHTCEEECSCEEEEEEECS--SCEEEEEES--SSCEEEEEESEEEECSCE--EECC
T ss_pred HHHHHHHcCCEEEeCcEEEEEEEcC--CeEEEEEEc--CCceEEEEcCEEEECCCC--CccC
Confidence 8888888899999999999998765 445555541 123367999999999994 4443
No 195
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=98.35 E-value=4.6e-06 Score=82.65 Aligned_cols=101 Identities=21% Similarity=0.187 Sum_probs=80.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+. . ...++.+.
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~--------------------------------~--~d~~~~~~ 232 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLR--------------------------------G--FDQQMAEL 232 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSST--------------------------------T--SCHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc--------------------------------c--cCHHHHHH
Confidence 4579999999999999999999999999998753210 0 12567778
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.|++++.++.|.+++..++ +.+.|+..++..++..++.+|.||+|+|.
T Consensus 233 l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~~~D~vi~a~G~ 287 (483)
T 3dgh_A 233 VAASMEERGIPFLRKTVPLSVEKQDD-GKLLVKYKNVETGEESEDVYDTVLWAIGR 287 (483)
T ss_dssp HHHHHHHTTCCEEETEEEEEEEECTT-SCEEEEEEETTTCCEEEEEESEEEECSCE
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCC-CcEEEEEecCCCCceeEEEcCEEEECccc
Confidence 88888889999999999999987653 34567777765445568999999999994
No 196
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=98.35 E-value=2e-06 Score=85.67 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=78.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++...
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~d~~~~~~ 228 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP-------------------------------Y--EDADAALV 228 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSC-------------------------------C--SSHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------------------c--cCHHHHHH
Confidence 46899999999999999999999999999998764310 0 12567788
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.|++++++++|++++..+ +.+.+...++ .++.+|.||+|+|.
T Consensus 229 l~~~l~~~GV~i~~~~~V~~i~~~~--~~v~v~~~~g-----~~i~aD~Vv~a~G~ 277 (499)
T 1xdi_A 229 LEESFAERGVRLFKNARAASVTRTG--AGVLVTMTDG-----RTVEGSHALMTIGS 277 (499)
T ss_dssp HHHHHHHTTCEEETTCCEEEEEECS--SSEEEEETTS-----CEEEESEEEECCCE
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeC--CEEEEEECCC-----cEEEcCEEEECCCC
Confidence 8888888999999999999998765 4455665443 57999999999994
No 197
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=98.34 E-value=8.7e-07 Score=87.85 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=79.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~ 231 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ---------------------------------GADRDLVKV 231 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST---------------------------------TSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc---------------------------------ccCHHHHHH
Confidence 56899999999999999999999999999998764310 012567777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEee-cCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQ-GLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~-~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.|++++++++|.+++..+ +...|++.+ ...+ .++.+|.||+|+|. +|+.
T Consensus 232 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~~~~~g--~~~~~D~vv~a~G~--~p~~ 288 (482)
T 1ojt_A 232 WQKQNEYRFDNIMVNTKTVAVEPKE--DGVYVTFEGANAPK--EPQRYDAVLVAAGR--APNG 288 (482)
T ss_dssp HHHHHGGGEEEEECSCEEEEEEEET--TEEEEEEESSSCCS--SCEEESCEEECCCE--EECG
T ss_pred HHHHHHhcCCEEEECCEEEEEEEcC--CeEEEEEeccCCCc--eEEEcCEEEECcCC--CcCC
Confidence 8888888899999999999998765 455566654 1001 46789999999994 4443
No 198
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=98.34 E-value=2.4e-06 Score=82.69 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=79.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ....++.+
T Consensus 141 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------------------------------~-~~~~~~~~ 188 (404)
T 3fg2_P 141 DKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA-------------------------------R-VVTPEISS 188 (404)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-------------------------------T-TSCHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh-------------------------------h-ccCHHHHH
Confidence 456899999999999999999999999999998764310 0 01367778
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+..++.|+++++++.|.+++..++ ....|.+.++ .++.||.||+|+|.
T Consensus 189 ~l~~~l~~~GV~i~~~~~v~~i~~~~~-~v~~V~~~dG-----~~i~aD~Vv~a~G~ 239 (404)
T 3fg2_P 189 YFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLSDG-----NTLPCDLVVVGVGV 239 (404)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEEETT-EEEEEEETTS-----CEEECSEEEECCCE
T ss_pred HHHHHHHhCCcEEEECCEEEEEEecCC-cEEEEEeCCC-----CEEEcCEEEECcCC
Confidence 888888889999999999999987652 2234666665 68999999999994
No 199
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=98.34 E-value=1.4e-06 Score=86.27 Aligned_cols=96 Identities=22% Similarity=0.331 Sum_probs=76.4
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~ 231 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT---------------------------------IYDGDMAE 231 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS---------------------------------SSCHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh---------------------------------cCCHHHHH
Confidence 567899999999999999999999999999998764321 01256777
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+++.|++++.++.|++++..+ ..+.+.+.+ .++.+|.||+|+|.
T Consensus 232 ~l~~~l~~~Gv~i~~~~~v~~i~~~~--~v~~v~~~~------~~i~~D~vi~a~G~ 280 (480)
T 3cgb_A 232 YIYKEADKHHIEILTNENVKAFKGNE--RVEAVETDK------GTYKADLVLVSVGV 280 (480)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEESS--BEEEEEETT------EEEECSEEEECSCE
T ss_pred HHHHHHHHcCcEEEcCCEEEEEEcCC--cEEEEEECC------CEEEcCEEEECcCC
Confidence 88888888999999999999998643 333344432 58999999999994
No 200
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=98.34 E-value=2.3e-06 Score=82.85 Aligned_cols=93 Identities=24% Similarity=0.329 Sum_probs=75.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ....++...
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~~ 192 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS-------------------------------R-AAPATLADF 192 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------T-TSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc-------------------------------c-ccCHHHHHH
Confidence 57899999999999999999999999999999864310 0 012567778
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+..++.|++++.+++|.+++ + + .|++.++ .++.+|.||+|+|.
T Consensus 193 l~~~l~~~GV~i~~~~~v~~i~--~--~--~v~~~~g-----~~i~~D~vi~a~G~ 237 (408)
T 2gqw_A 193 VARYHAAQGVDLRFERSVTGSV--D--G--VVLLDDG-----TRIAADMVVVGIGV 237 (408)
T ss_dssp HHHHHHHTTCEEEESCCEEEEE--T--T--EEEETTS-----CEEECSEEEECSCE
T ss_pred HHHHHHHcCcEEEeCCEEEEEE--C--C--EEEECCC-----CEEEcCEEEECcCC
Confidence 8888888999999999999998 3 3 3666654 68999999999994
No 201
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=98.33 E-value=3.1e-06 Score=83.60 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=77.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~d~~~~~~ 220 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP---------------------------------TLDEDVTNA 220 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------------------------------TSCHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc---------------------------------cCCHHHHHH
Confidence 46899999999999999999999999999998764310 012567777
Q ss_pred HHHHH-HHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYT-NHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~-~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+ ++.|++++++++|++++..+ +.+.+.+... .++..++.+|.||+|+|.
T Consensus 221 l~~~l~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~~-~g~~~~i~~D~vv~a~G~ 274 (468)
T 2qae_A 221 LVGALAKNEKMKFMTSTKVVGGTNNG--DSVSLEVEGK-NGKRETVTCEALLVSVGR 274 (468)
T ss_dssp HHHHHHHHTCCEEECSCEEEEEEECS--SSEEEEEECC----EEEEEESEEEECSCE
T ss_pred HHHHHhhcCCcEEEeCCEEEEEEEcC--CeEEEEEEcC-CCceEEEECCEEEECCCc
Confidence 88888 88899999999999998765 4455665411 112357999999999994
No 202
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=98.33 E-value=2.1e-06 Score=85.99 Aligned_cols=96 Identities=16% Similarity=0.229 Sum_probs=77.8
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTYL 114 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (443)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.+
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~l 261 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-------------------------------I--KDNETRAYV 261 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-------------------------------C--CSHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccc-------------------------------c--ccHHHHHHH
Confidence 7899999999999999999999999999998764310 0 136677888
Q ss_pred HHHHHHcCCccccceeEEEEEEeCCCCe---EEEEEeecCCCcEE-EEEeCEEEEccCC
Q 013435 115 ETYTNHFGLDPVFNTTVVNAEYDHLSRL---WRVKTQQGLKQEET-VYLCQWLIVATGE 169 (443)
Q Consensus 115 ~~~~~~~~~~v~~~~~V~~i~~~~~~~~---~~v~~~~~~~~~~~-~i~a~~vIiAtG~ 169 (443)
.+.+++.|++++++++|++++..++ +. +.|++.++ . ++.+|.||+|+|.
T Consensus 262 ~~~l~~~GV~i~~~~~V~~i~~~~~-~~v~~~~v~~~~G-----~~~i~aD~Vv~A~G~ 314 (523)
T 1mo9_A 262 LDRMKEQGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNG-----EMRIETDFVFLGLGE 314 (523)
T ss_dssp HHHHHHTTCEEESSCEEEEEEECTT-SBEEEEEEEETTE-----EEEEECSCEEECCCC
T ss_pred HHHHHhCCcEEEECCEEEEEEEcCC-CceEEEEEEECCC-----cEEEEcCEEEECcCC
Confidence 8888889999999999999987542 22 55666543 4 8999999999994
No 203
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=98.33 E-value=3.7e-06 Score=83.47 Aligned_cols=103 Identities=19% Similarity=0.207 Sum_probs=79.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~d~~~~~~ 220 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN---------------------------------LQDEEMKRY 220 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT---------------------------------CCCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc---------------------------------cCCHHHHHH
Confidence 46899999999999999999999999999999874321 012567777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+..++. ++++.++.|.+++..+ +.+.++..+ ..++..++.+|.||+|+|. .|+.
T Consensus 221 l~~~l~~~-V~i~~~~~v~~i~~~~--~~v~v~~~~-~~G~~~~i~~D~Vi~a~G~--~p~~ 276 (492)
T 3ic9_A 221 AEKTFNEE-FYFDAKARVISTIEKE--DAVEVIYFD-KSGQKTTESFQYVLAATGR--KANV 276 (492)
T ss_dssp HHHHHHTT-SEEETTCEEEEEEECS--SSEEEEEEC-TTCCEEEEEESEEEECSCC--EESC
T ss_pred HHHHHhhC-cEEEECCEEEEEEEcC--CEEEEEEEe-CCCceEEEECCEEEEeeCC--ccCC
Confidence 77777766 8999999999998876 455566542 1223468999999999994 5443
No 204
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.32 E-value=7.8e-07 Score=87.60 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=76.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.++
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~ 217 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP---------------------------------TYDSELTAP 217 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST---------------------------------TSCHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc---------------------------------ccCHHHHHH
Confidence 46899999999999999999999999999999874321 012566777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCccC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVVP 176 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~p 176 (443)
+.+.+++.|++++.+++|++++. + . +.++..+ ++..++.+|.||+|+| .+|+.+
T Consensus 218 l~~~l~~~gv~i~~~~~v~~i~~-~--~-v~v~~~~---G~~~~i~~D~vv~a~G--~~p~~~ 271 (458)
T 1lvl_A 218 VAESLKKLGIALHLGHSVEGYEN-G--C-LLANDGK---GGQLRLEADRVLVAVG--RRPRTK 271 (458)
T ss_dssp HHHHHHHHTCEEETTCEEEEEET-T--E-EEEECSS---SCCCEECCSCEEECCC--EEECCS
T ss_pred HHHHHHHCCCEEEECCEEEEEEe-C--C-EEEEECC---CceEEEECCEEEECcC--CCcCCC
Confidence 77778888999999999999975 3 3 4444211 2235799999999999 455543
No 205
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=98.32 E-value=2.7e-06 Score=83.60 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=77.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ....++.+
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~ 195 (452)
T 2cdu_A 148 KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY-------------------------------K-YFDKEFTD 195 (452)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT-------------------------------T-TSCHHHHH
T ss_pred cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh-------------------------------h-hhhhhHHH
Confidence 456899999999999999999999999999998764310 0 01256777
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
.+.+.+++.|++++++++|++++..+ +.+.....++ .++.+|.||+|+|. .|+.
T Consensus 196 ~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~v~~v~~~g-----~~i~~D~vv~a~G~--~p~~ 249 (452)
T 2cdu_A 196 ILAKDYEAHGVNLVLGSKVAAFEEVD--DEIITKTLDG-----KEIKSDIAILCIGF--RPNT 249 (452)
T ss_dssp HHHHHHHHTTCEEEESSCEEEEEEET--TEEEEEETTS-----CEEEESEEEECCCE--EECC
T ss_pred HHHHHHHHCCCEEEcCCeeEEEEcCC--CeEEEEEeCC-----CEEECCEEEECcCC--CCCH
Confidence 88888888999999999999998654 4433222233 57999999999994 4443
No 206
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=98.31 E-value=4.3e-06 Score=82.80 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=79.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~d~~~~~~ 233 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR---------------------------------SFDSMISTN 233 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT---------------------------------TSCHHHHHH
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc---------------------------------ccCHHHHHH
Confidence 46799999999999999999999999999998764310 012567778
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcE--EEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEE--TVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~--~~i~a~~vIiAtG~ 169 (443)
+.+.+++.|++++.++.|.+++..++...+.+.+.+...++. ..+.+|.||+|+|.
T Consensus 234 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~ 291 (478)
T 3dk9_A 234 CTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR 291 (478)
T ss_dssp HHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCE
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecc
Confidence 888888899999999999999876532135566654322232 68999999999994
No 207
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=98.31 E-value=2.4e-06 Score=83.35 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=76.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ....++.+.
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~~ 196 (431)
T 1q1r_A 149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE-------------------------------R-VTAPPVSAF 196 (431)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-------------------------------T-TSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc-------------------------------c-hhhHHHHHH
Confidence 56899999999999999999999999999998764310 0 012566777
Q ss_pred HHHHHHHcCCccccceeEEEEEE--eCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEY--DHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~--~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.|++++++++|++++. .++ ....|.+.++ ..+.+|.||+|+|.
T Consensus 197 l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~v~~v~~~~G-----~~i~~D~Vv~a~G~ 248 (431)
T 1q1r_A 197 YEHLHREAGVDIRTGTQVCGFEMSTDQQ-KVTAVLCEDG-----TRLPADLVIAGIGL 248 (431)
T ss_dssp HHHHHHHHTCEEECSCCEEEEEECTTTC-CEEEEEETTS-----CEEECSEEEECCCE
T ss_pred HHHHHHhCCeEEEeCCEEEEEEeccCCC-cEEEEEeCCC-----CEEEcCEEEECCCC
Confidence 77888888999999999999987 331 3335666554 67999999999994
No 208
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=98.31 E-value=3.1e-06 Score=83.61 Aligned_cols=97 Identities=23% Similarity=0.219 Sum_probs=79.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK-GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~-g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
..+++|||+|+.|+.+|..|.+. |.+|+++++.+.+.. . ....++.+
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~ 206 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP-------------------------------G-FTSKSLSQ 206 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST-------------------------------T-TSCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc-------------------------------c-ccCHHHHH
Confidence 56899999999999999999999 999999998764310 0 01256778
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+++.|++++.+++|.+++..+ +.+.+.+.++ .++.+|.||+|+|.
T Consensus 207 ~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~i~aD~Vv~a~G~ 256 (472)
T 3iwa_A 207 MLRHDLEKNDVVVHTGEKVVRLEGEN--GKVARVITDK-----RTLDADLVILAAGV 256 (472)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEESS-----CEEECSEEEECSCE
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEccC--CeEEEEEeCC-----CEEEcCEEEECCCC
Confidence 88888888999999999999998855 5566777665 58999999999994
No 209
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=98.31 E-value=2.2e-06 Score=85.13 Aligned_cols=101 Identities=13% Similarity=0.067 Sum_probs=80.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc---CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK---GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
..+++|||+|+.|+.+|..|.+. |.+|+++++.+.+.. . ...++
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-------------------------------~--~d~~~ 233 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-------------------------------G--FDSEL 233 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-------------------------------T--SCHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc-------------------------------c--cCHHH
Confidence 46899999999999999999999 999999999864310 0 12567
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
.+.+.+.+++.|++++++++|++++..++ +.+.|++.++ .++.+|.||+|+|. .|+.
T Consensus 234 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~~v~~~~G-----~~i~~D~vv~a~G~--~p~~ 290 (490)
T 1fec_A 234 RKQLTEQLRANGINVRTHENPAKVTKNAD-GTRHVVFESG-----AEADYDVVMLAIGR--VPRS 290 (490)
T ss_dssp HHHHHHHHHHTTEEEEETCCEEEEEECTT-SCEEEEETTS-----CEEEESEEEECSCE--EESC
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CEEEEEECCC-----cEEEcCEEEEccCC--CcCc
Confidence 77888888889999999999999987652 3456776654 47999999999994 4443
No 210
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=98.29 E-value=2.6e-06 Score=84.60 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=78.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc---CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK---GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQF 110 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (443)
..+++|||+|+.|+.+|..|.+. |.+|+++++.+.+.. . ...++
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-------------------------------~--~d~~~ 237 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR-------------------------------G--FDETI 237 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT-------------------------------T--SCHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc-------------------------------c--cCHHH
Confidence 45799999999999999999999 999999998764310 0 12567
Q ss_pred HHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 111 LTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 111 ~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+.+++.|++++++++|.+++..++ +.+.|++.++ .++.+|.||+|+|.
T Consensus 238 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~~v~~~~G-----~~i~~D~vv~a~G~ 290 (495)
T 2wpf_A 238 REEVTKQLTANGIEIMTNENPAKVSLNTD-GSKHVTFESG-----KTLDVDVVMMAIGR 290 (495)
T ss_dssp HHHHHHHHHHTTCEEEESCCEEEEEECTT-SCEEEEETTS-----CEEEESEEEECSCE
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEcCC-ceEEEEECCC-----cEEEcCEEEECCCC
Confidence 77888888888999999999999987642 3456776654 47999999999994
No 211
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=98.28 E-value=3.1e-07 Score=84.34 Aligned_cols=190 Identities=11% Similarity=0.123 Sum_probs=98.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhc-CCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccc
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNY-NARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQ 281 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~-g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (443)
.+|+|||+|.+|+.+|..|++. |.+|+++.+.+. ........... +.... ......+. +..
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~-~gg~~~~~~~~--~~~~~---~~~~~~~~----l~~-------- 101 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS-PGGGAWLGGQL--FSAMI---VRKPAHLF----LDE-------- 101 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS-CCTTTTCCSTT--CCCEE---EETTTHHH----HHH--------
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC-CCCceecCCcc--hHHHH---cCcHHHHH----HHH--------
Confidence 4799999999999999999997 999999999873 11000000000 00000 00000000 110
Q ss_pred cCCCCCCCCCccccccCCCcccccccchhhhcC-CCeEEecC--CcEEe--CC---cEEEc---------CC-----cEE
Q 013435 282 FGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRS-GNIKVCRA--IKRLT--HH---AAEFI---------DG-----SIE 339 (443)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~--v~~~~--~~---~v~~~---------~g-----~~~ 339 (443)
+++.......... ......+...+.+.+.+ .+++++.+ +.++. .+ ++.+. ++ .++
T Consensus 102 ~G~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i 178 (284)
T 1rp0_A 102 IGVAYDEQDTYVV---VKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVM 178 (284)
T ss_dssp HTCCCEECSSEEE---ESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEE
T ss_pred cCCCcccCCCEEE---ecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEE
Confidence 1111110000000 00011122223344433 57888776 55553 22 34442 22 568
Q ss_pred cccEEEEccCCCCCCCCCccCc--------CcCccCCCCcCCCC------CCCCcCCCceEEEeeccCC----------c
Q 013435 340 NYDAIILATGYKSNVPYWLKDT--------EMFSEKDGFPRMEF------PNGWKGAHGLYAVGFNKRG----------L 395 (443)
Q Consensus 340 ~~D~vi~atG~~~~~~~~~~~~--------~l~~~~~G~i~~~~------~~~~~~~~~ifaiGd~~~~----------~ 395 (443)
++|.||.|+|..+....+.... ++.. ..|. .++. +...+..|++|++|++... .
T Consensus 179 ~ad~VV~AtG~~s~~~~~~~~~~~~~g~~~~v~~-~~g~-~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~g~~~~gp~~ 256 (284)
T 1rp0_A 179 EAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPG-MKAL-DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTF 256 (284)
T ss_dssp EEEEEEECCCSSSTTTTHHHHHHHHTTSSSCCCC-CEEE-CHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCSCC
T ss_pred ECCEEEECCCCchHHHHHHHHHhhhccCCCCcCC-cCCc-hhhhhhHHHhhccccccCCEEEEeeehhhhcCCCCcChHH
Confidence 9999999999988764322111 1111 1121 1110 0223466999999997521 1
Q ss_pred ccchHHHHHHHHHHHHhhHH
Q 013435 396 LGASIDARRISEDIEHQWNS 415 (443)
Q Consensus 396 ~~a~~~a~~~a~~i~~~l~~ 415 (443)
..+..+|+.+|.+|...|.+
T Consensus 257 ~~~~~sG~~~a~~i~~~l~~ 276 (284)
T 1rp0_A 257 GAMMISGQKAGQLALKALGL 276 (284)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHhhh
Confidence 24557999999999998753
No 212
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=98.28 E-value=4.9e-06 Score=82.34 Aligned_cols=103 Identities=21% Similarity=0.227 Sum_probs=80.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~ 226 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP---------------------------------AVDEQVAKE 226 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST---------------------------------TSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------------------------------ccCHHHHHH
Confidence 46799999999999999999999999999999764310 012567778
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+.+++.|++++.+++|.+++..+ +...+...++.+ ...+.+|.||+|+|. .|+.
T Consensus 227 l~~~l~~~Gv~v~~~~~v~~i~~~~--~~~~v~~~~~~g--~~~~~~D~vi~a~G~--~p~~ 282 (476)
T 3lad_A 227 AQKILTKQGLKILLGARVTGTEVKN--KQVTVKFVDAEG--EKSQAFDKLIVAVGR--RPVT 282 (476)
T ss_dssp HHHHHHHTTEEEEETCEEEEEEECS--SCEEEEEESSSE--EEEEEESEEEECSCE--EECC
T ss_pred HHHHHHhCCCEEEECCEEEEEEEcC--CEEEEEEEeCCC--cEEEECCEEEEeeCC--cccC
Confidence 8888888899999999999998876 555566654321 368999999999994 4443
No 213
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=98.27 E-value=3.7e-07 Score=91.23 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=38.8
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCCccc
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEK-GVPSLILERANCIASLW 73 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~-g~~v~iie~~~~~gg~w 73 (443)
+.+.+||+|||||++||++|+.|+++ |++|+|+|+++.+||..
T Consensus 7 p~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~ 50 (513)
T 4gde_A 7 PDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLA 50 (513)
T ss_dssp CSEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGG
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCe
Confidence 34568999999999999999999985 99999999999999954
No 214
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=98.27 E-value=3.7e-06 Score=78.36 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=75.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. ....+.+
T Consensus 144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------------------------~~~~~~~ 188 (320)
T 1trb_A 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIK 188 (320)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------CCHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc-----------------------------------cCHHHHH
Confidence 45689999999999999999999999999999875321 1245556
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCC-CcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLK-QEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~-~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+++.+++++++++|.+++.+++ ....|...+... ++..++.+|.||+|+|.
T Consensus 189 ~l~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~ 245 (320)
T 1trb_A 189 RLMDKVENGNIILHTNRTLEEVTGDQM-GVTGVRLRDTQNSDNIESLDVAGLFVAIGH 245 (320)
T ss_dssp HHHHHHHTSSEEEECSCEEEEEEECSS-SEEEEEEECCTTCCCCEEEECSEEEECSCE
T ss_pred HHHHhcccCCeEEEcCceeEEEEcCCC-ceEEEEEEeccCCCceEEEEcCEEEEEeCC
Confidence 666677778999999999999987652 222355544211 23368999999999994
No 215
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=4.3e-06 Score=82.73 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=79.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~d~~~~~ 230 (479)
T 2hqm_A 184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR-------------------------------K--FDECIQN 230 (479)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------------------T--SCHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc-------------------------------c--cCHHHHH
Confidence 346899999999999999999999999999998764310 0 1256777
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
.+.+.+++.|++++++++|++++..++.....|++.++ + .++.+|.||+|+|. +|+.
T Consensus 231 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G---~-~~i~~D~vv~a~G~--~p~~ 287 (479)
T 2hqm_A 231 TITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDS---K-SIDDVDELIWTIGR--KSHL 287 (479)
T ss_dssp HHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTS---C-EEEEESEEEECSCE--EECC
T ss_pred HHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCC---c-EEEEcCEEEECCCC--CCcc
Confidence 77888888899999999999998754211355666543 2 47999999999994 4443
No 216
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=98.26 E-value=3.1e-06 Score=83.89 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=78.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+++++++.+.+.. . ...++...
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 237 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR-------------------------------N--FDYDLRQL 237 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T--SCHHHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc-------------------------------c--cCHHHHHH
Confidence 56899999999999999999999999999998764310 0 12566777
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.|++++.++.|++++..+ +.+.|.+.++ .++.+|.||+|+|.
T Consensus 238 l~~~l~~~Gv~i~~~~~V~~i~~~~--~~v~v~~~~g-----~~i~aD~Vi~A~G~ 286 (484)
T 3o0h_A 238 LNDAMVAKGISIIYEATVSQVQSTE--NCYNVVLTNG-----QTICADRVMLATGR 286 (484)
T ss_dssp HHHHHHHHTCEEESSCCEEEEEECS--SSEEEEETTS-----CEEEESEEEECCCE
T ss_pred HHHHHHHCCCEEEeCCEEEEEEeeC--CEEEEEECCC-----cEEEcCEEEEeeCC
Confidence 7788888899999999999998876 5566777664 58999999999994
No 217
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=98.25 E-value=1.4e-05 Score=79.89 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=76.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+. . ...++.+.
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~--------------------------------~--~d~~~~~~ 255 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR--------------------------------G--FDQDMANK 255 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST--------------------------------T--SCHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccc--------------------------------c--CCHHHHHH
Confidence 4579999999999999999999999999999753210 0 12667788
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCC--CCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHL--SRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~--~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+..++.|++++.++.+..+...++ .+.+.++.....+++..++.+|.||+|+|.
T Consensus 256 ~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~ 313 (519)
T 3qfa_A 256 IGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGR 313 (519)
T ss_dssp HHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCE
T ss_pred HHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCC
Confidence 88888889999999988888876432 134445544332333357899999999994
No 218
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=98.25 E-value=2.9e-06 Score=84.21 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=77.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ....++.+
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~ 240 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA-------------------------------G-YYDRDLTD 240 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------T-TSCHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh-------------------------------h-HHHHHHHH
Confidence 457899999999999999999999999999999764310 0 01256777
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
.+.+.+++.|++++++++|++++.++ ....+.+ ++ .++.+|.||+|+| .+|+.
T Consensus 241 ~l~~~l~~~GV~i~~~~~v~~i~~~~--~v~~v~~-~g-----~~i~~D~Vi~a~G--~~p~~ 293 (490)
T 2bc0_A 241 LMAKNMEEHGIQLAFGETVKEVAGNG--KVEKIIT-DK-----NEYDVDMVILAVG--FRPNT 293 (490)
T ss_dssp HHHHHHHTTTCEEEETCCEEEEECSS--SCCEEEE-SS-----CEEECSEEEECCC--EEECC
T ss_pred HHHHHHHhCCeEEEeCCEEEEEEcCC--cEEEEEE-CC-----cEEECCEEEECCC--CCcCh
Confidence 88888888899999999999998532 2222444 33 5799999999999 34443
No 219
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=98.23 E-value=3.9e-06 Score=83.32 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=75.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHH----cCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTE----KGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQ 109 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~----~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (443)
..+|+|||||+.|+.+|..|.+ .|.+|+++++.+.+.+ . ....+
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~-------------------------------~-~l~~~ 227 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG-------------------------------K-ILPEY 227 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT-------------------------------T-TSCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccc-------------------------------c-cCCHH
Confidence 5689999999999999999987 4788999987653210 0 01256
Q ss_pred HHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 110 FLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 110 ~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+...+.+..++.|++++.++.|++++..+ +.+.|++.++ .++.||.||+|+|.
T Consensus 228 ~~~~~~~~l~~~GV~v~~~~~V~~i~~~~--~~~~v~l~dG-----~~i~aD~Vv~a~G~ 280 (493)
T 1m6i_A 228 LSNWTMEKVRREGVKVMPNAIVQSVGVSS--GKLLIKLKDG-----RKVETDHIVAAVGL 280 (493)
T ss_dssp HHHHHHHHHHTTTCEEECSCCEEEEEEET--TEEEEEETTS-----CEEEESEEEECCCE
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEecC--CeEEEEECCC-----CEEECCEEEECCCC
Confidence 77777888888899999999999998765 5556776655 68999999999994
No 220
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.23 E-value=1.5e-06 Score=82.80 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=72.6
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTYL 114 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (443)
.+++|||||+.|+.+|..|.+.|.+|+++++.+.+. + ...++.+++
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~---~~~~~~~~l 189 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL-------------------------------G---LDEELSNMI 189 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT-------------------------------T---CCHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec-------------------------------c---CCHHHHHHH
Confidence 679999999999999999999999999999876431 0 125677788
Q ss_pred HHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 115 ETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 115 ~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+..++.|++++.+++|++++ . .. |.+.++ . +.+|.||+|+|.
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~--~--~~--v~~~~g-----~-i~~D~vi~a~G~ 232 (367)
T 1xhc_A 190 KDMLEETGVKFFLNSELLEAN--E--EG--VLTNSG-----F-IEGKVKICAIGI 232 (367)
T ss_dssp HHHHHHTTEEEECSCCEEEEC--S--SE--EEETTE-----E-EECSCEEEECCE
T ss_pred HHHHHHCCCEEEcCCEEEEEE--e--eE--EEECCC-----E-EEcCEEEECcCC
Confidence 888888899999999999887 2 33 555543 4 999999999994
No 221
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=98.23 E-value=5.3e-06 Score=83.93 Aligned_cols=99 Identities=21% Similarity=0.348 Sum_probs=78.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ....++..
T Consensus 150 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~--~~~~~~~~ 196 (565)
T 3ntd_A 150 NVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM-------------------------------T--PVDREMAG 196 (565)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC-------------------------------T--TSCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc-------------------------------h--hcCHHHHH
Confidence 35689999999999999999999999999999976431 0 01256777
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeC-----------------CCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDH-----------------LSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~-----------------~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+++.|+++++++.|.+++... ..+.+.+...++ .++.+|.||+|+|.
T Consensus 197 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-----~~i~~D~vi~a~G~ 265 (565)
T 3ntd_A 197 FAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNG-----ELLETDLLIMAIGV 265 (565)
T ss_dssp HHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTS-----CEEEESEEEECSCE
T ss_pred HHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCC-----CEEEcCEEEECcCC
Confidence 78888888999999999999998731 115555666554 58999999999994
No 222
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=98.21 E-value=8.1e-06 Score=76.58 Aligned_cols=100 Identities=17% Similarity=0.121 Sum_probs=75.5
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||+|..|+.+|..|.+.|.+|+++++.+.+. ......+
T Consensus 151 ~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~-----------------------------------~~~~~~~ 195 (335)
T 2zbw_A 151 QGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR-----------------------------------AHEASVK 195 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCC-----------------------------------SCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccC-----------------------------------ccHHHHH
Confidence 45689999999999999999999999999999876321 1134556
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+..++.+++++.++.|.+++.++ ....|.+.....++..++.+|.||+|+|.
T Consensus 196 ~l~~~l~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 250 (335)
T 2zbw_A 196 ELMKAHEEGRLEVLTPYELRRVEGDE--RVRWAVVFHNQTQEELALEVDAVLILAGY 250 (335)
T ss_dssp HHHHHHHTTSSEEETTEEEEEEEESS--SEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred HHHhccccCCeEEecCCcceeEccCC--CeeEEEEEECCCCceEEEecCEEEEeecC
Confidence 66777777799999999999998743 33235554321234468999999999994
No 223
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=98.18 E-value=2.5e-06 Score=83.34 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=73.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..+.+.|.+|+++++.+.+... ...++.+.
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~---------------------------------~d~~~~~~ 193 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL---------------------------------MDADMNQP 193 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT---------------------------------SCGGGGHH
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc---------------------------------ccchhHHH
Confidence 568999999999999999999999999999997744210 11345566
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+..++.+++++.+++|.+++.. . +...++ ..+.+|.||+|+|.
T Consensus 194 ~~~~l~~~gV~i~~~~~v~~~~~~----~--v~~~~g-----~~~~~D~vl~a~G~ 238 (437)
T 4eqs_A 194 ILDELDKREIPYRLNEEINAINGN----E--ITFKSG-----KVEHYDMIIEGVGT 238 (437)
T ss_dssp HHHHHHHTTCCEEESCCEEEEETT----E--EEETTS-----CEEECSEEEECCCE
T ss_pred HHHHhhccceEEEeccEEEEecCC----e--eeecCC-----eEEeeeeEEEEece
Confidence 777788889999999999887632 2 666665 68999999999993
No 224
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=98.15 E-value=8.1e-06 Score=80.43 Aligned_cols=96 Identities=17% Similarity=0.183 Sum_probs=77.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..+.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~-------------------------------~--~~~~~~~~ 216 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS-------------------------------R--FDQDMRRG 216 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------------------c--cCHHHHHH
Confidence 56799999999999999999999999999998764310 0 12567788
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEE-EeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVK-TQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~-~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+++.|++++.++.|.+++..++ +.+.|. +.++ . +.+|.||+|+|.
T Consensus 217 l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~v~~~~~g-----~-i~aD~Vv~a~G~ 266 (463)
T 4dna_A 217 LHAAMEEKGIRILCEDIIQSVSADAD-GRRVATTMKHG-----E-IVADQVMLALGR 266 (463)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEECTT-SCEEEEESSSC-----E-EEESEEEECSCE
T ss_pred HHHHHHHCCCEEECCCEEEEEEEcCC-CEEEEEEcCCC-----e-EEeCEEEEeeCc
Confidence 88888889999999999999988653 335566 5553 4 999999999994
No 225
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=98.14 E-value=7.2e-06 Score=83.58 Aligned_cols=41 Identities=27% Similarity=0.313 Sum_probs=36.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
..+||+|||||++|+++|..|++.|++|+|+|+.+..||.+
T Consensus 45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence 46899999999999999999999999999999998777644
No 226
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=98.13 E-value=5.1e-06 Score=81.00 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=68.4
Q ss_pred CeEEEEccCCCHHHHHHHHhhcC--CccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCcc
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYN--ARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTS 280 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g--~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (443)
|+|+|||||..|+.+|..|.+.+ .+||++.+++.... ++. +... ..+...
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~-~p~-----------l~~v----------------~~g~~~ 54 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGF-TPA-----------FPHL----------------AMGWRK 54 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEEC-GGG-----------HHHH----------------HHTCSC
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCcc-Ccc-----------HHHH----------------hcCCCC
Confidence 68999999999999999999876 67999988873221 110 0000 000000
Q ss_pred ccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC-CcEEeCC--cEEEcCCcEEcccEEEEccCCCCC
Q 013435 281 QFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA-IKRLTHH--AAEFIDGSIENYDAIILATGYKSN 353 (443)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~~~~~--~v~~~~g~~~~~D~vi~atG~~~~ 353 (443)
. ..+...+.+.+.+.+++++.+ ++.++.+ .|.+.+|+++++|.+|+|||.++.
T Consensus 55 ~--------------------~~i~~~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 55 F--------------------EDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp G--------------------GGSEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEE
T ss_pred H--------------------HHhhhcHHHHHHHCCcEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc
Confidence 0 001111223344567888877 8888764 488899999999999999998754
No 227
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.12 E-value=3e-06 Score=75.27 Aligned_cols=175 Identities=19% Similarity=0.212 Sum_probs=96.4
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCcccc
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQF 282 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (443)
.+|+|||+|++|+++|..|++.|.+|+++.+..... ..... + ....+....+.+.+. + .
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~-G~~~~--~------~~~~~~~~~~~~~~~---------d--~- 62 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAV-MMPFL--P------PKPPFPPGSLLERAY---------D--P- 62 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT-TCCSS--C------CCSCCCTTCHHHHHC---------C--T-
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcC-CcccC--c------cccccchhhHHhhhc---------c--C-
Confidence 479999999999999999999999999999874211 00000 0 000000000111000 0 0
Q ss_pred CCCCCCCCCccccccCCCcccccccchhhhcCC-CeEEecC-CcEEeC--C---cEEEcCCcEEcccEEEEccCCCCCCC
Q 013435 283 GLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSG-NIKVCRA-IKRLTH--H---AAEFIDGSIENYDAIILATGYKSNVP 355 (443)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~-v~~~~~--~---~v~~~~g~~~~~D~vi~atG~~~~~~ 355 (443)
.++ ....+...+.+.+.+. +++++.. ++++.. + ++.+.+|+++++|.||+|+|...+..
T Consensus 63 ------~g~--------~~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~ 128 (232)
T 2cul_A 63 ------KDE--------RVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGAR 128 (232)
T ss_dssp ------TCC--------CHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCE
T ss_pred ------CCC--------CHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhc
Confidence 000 0112223334445443 7777644 555542 2 36677888999999999999966531
Q ss_pred CCc----------------------cCcCcCccC--------CCCcC-------CC-----C-CCCCcCCCceEEEeecc
Q 013435 356 YWL----------------------KDTEMFSEK--------DGFPR-------ME-----F-PNGWKGAHGLYAVGFNK 392 (443)
Q Consensus 356 ~~~----------------------~~~~l~~~~--------~G~i~-------~~-----~-~~~~~~~~~ifaiGd~~ 392 (443)
.++ .+.++..+. .|.+. .. . ....++.|+||++|||+
T Consensus 129 ~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a 208 (232)
T 2cul_A 129 LFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV 208 (232)
T ss_dssp EEETTEEESEEETTEECCSHHHHHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT
T ss_pred eecCCccCCCCCCcccchhhhCHHHHhCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc
Confidence 110 011111110 01100 00 0 01125899999999999
Q ss_pred CCcc---cchHHHHHHHHHHHHhh
Q 013435 393 RGLL---GASIDARRISEDIEHQW 413 (443)
Q Consensus 393 ~~~~---~a~~~a~~~a~~i~~~l 413 (443)
... .+..||+.+|.+|...+
T Consensus 209 -~~g~~~~~~~~g~~~a~~i~~~l 231 (232)
T 2cul_A 209 -REGDYARMSEEGKRLAEHLLHEL 231 (232)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHHC
T ss_pred -cCccHHHHHHHHHHHHHHHHhhc
Confidence 422 35679999999998765
No 228
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=98.11 E-value=5e-06 Score=79.72 Aligned_cols=106 Identities=15% Similarity=0.215 Sum_probs=69.3
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCccc
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTSQ 281 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (443)
..+|+|||+|..|+.+|..|...+.+|+++.+.+.....+. . +..++. +...
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~-------~----l~~~l~----------------g~~~- 60 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRP-------R----LNEIIA----------------KNKS- 60 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGG-------G----HHHHHH----------------SCCC-
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccC-------h----hhHHHc----------------CCCC-
Confidence 35799999999999999999777899999988874211011 0 000000 0000
Q ss_pred cCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC--CcEEeCC--cEEEcCCcEEcccEEEEccCCCCCC
Q 013435 282 FGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH--AAEFIDGSIENYDAIILATGYKSNV 354 (443)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~--~v~~~~g~~~~~D~vi~atG~~~~~ 354 (443)
...+.....+.+.+.+++++.+ +++++.+ .+.+.+|+++.+|.+|+|||.+|..
T Consensus 61 -------------------~~~l~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~ 118 (385)
T 3klj_A 61 -------------------IDDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANK 118 (385)
T ss_dssp -------------------GGGTBSSCHHHHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred -------------------HHHccCCCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCC
Confidence 0001111223344567888766 7777653 4888899999999999999998875
No 229
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.08 E-value=1.9e-06 Score=81.91 Aligned_cols=44 Identities=32% Similarity=0.312 Sum_probs=40.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecC-CCCCccccc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERA-NCIASLWQL 75 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~-~~~gg~w~~ 75 (443)
...+||+|||||++|+++|+.|.+.|++++|+|+. +.+||.|..
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t 86 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT 86 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCE
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceee
Confidence 45679999999999999999999999999999999 999997654
No 230
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=98.08 E-value=2.2e-06 Score=82.11 Aligned_cols=44 Identities=30% Similarity=0.209 Sum_probs=40.7
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL 75 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 75 (443)
...+||+|||||++|+++|..|++.|.+|+|+|+.+.+||.|..
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 70 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD 70 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence 45789999999999999999999999999999999999997764
No 231
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=98.05 E-value=3.1e-06 Score=83.11 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=39.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL 75 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 75 (443)
..+||+|||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence 4579999999999999999999999999999999999997654
No 232
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=98.04 E-value=1.1e-05 Score=80.14 Aligned_cols=97 Identities=24% Similarity=0.295 Sum_probs=72.1
Q ss_pred CCeEEECCCHHHHHHHHHHHHc--------------CCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEK--------------GVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSN 100 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~--------------g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (443)
..++|||||+.|+.+|..|.+. ..+|+++|..+.+-
T Consensus 218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il------------------------------ 267 (502)
T 4g6h_A 218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL------------------------------ 267 (502)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS------------------------------
T ss_pred cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc------------------------------
Confidence 3599999999999999988753 36899999987531
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEe--ecCCCcEEEEEeCEEEEccCC
Q 013435 101 FPTYPTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQ--QGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~--~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+. ..+++.+++.+.+++.|+++++++.|++++.. ...+... ++. ....++.||.||.|+|.
T Consensus 268 -~~--~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~----~~~~~~~~~dg~-~~~~~i~ad~viwa~Gv 330 (502)
T 4g6h_A 268 -NM--FEKKLSSYAQSHLENTSIKVHLRTAVAKVEEK----QLLAKTKHEDGK-ITEETIPYGTLIWATGN 330 (502)
T ss_dssp -TT--SCHHHHHHHHHHHHHTTCEEETTEEEEEECSS----EEEEEEECTTSC-EEEEEEECSEEEECCCE
T ss_pred -cC--CCHHHHHHHHHHHHhcceeeecCceEEEEeCC----ceEEEEEecCcc-cceeeeccCEEEEccCC
Confidence 11 13778888999999999999999999988643 3223222 221 11257999999999994
No 233
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=98.04 E-value=1.2e-05 Score=81.63 Aligned_cols=95 Identities=22% Similarity=0.356 Sum_probs=76.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+
T Consensus 186 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~ 232 (588)
T 3ics_A 186 KPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP-------------------------------P--IDYEMAA 232 (588)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------------------T--SCHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc-------------------------------c--CCHHHHH
Confidence 467899999999999999999999999999998764310 0 1256777
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+++.|++++.++.|.+++... .. |.+.++ .++.+|.||+|+|.
T Consensus 233 ~l~~~l~~~GV~i~~~~~v~~i~~~~--~~--v~~~~g-----~~i~~D~Vi~a~G~ 280 (588)
T 3ics_A 233 YVHEHMKNHDVELVFEDGVDALEENG--AV--VRLKSG-----SVIQTDMLILAIGV 280 (588)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEGGG--TE--EEETTS-----CEEECSEEEECSCE
T ss_pred HHHHHHHHcCCEEEECCeEEEEecCC--CE--EEECCC-----CEEEcCEEEEccCC
Confidence 78888888999999999999997654 33 555554 57999999999994
No 234
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=98.04 E-value=5e-06 Score=80.88 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=39.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcC-CCEEEEecCCCCCccccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKG-VPSLILERANCIASLWQL 75 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~~ 75 (443)
+.+||+|||||++|+++|..|++.| .+|+|+|+.+.+||.+..
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t 48 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHS 48 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccc
Confidence 4579999999999999999999999 899999999999986544
No 235
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=98.03 E-value=1.2e-05 Score=78.68 Aligned_cols=104 Identities=15% Similarity=0.279 Sum_probs=69.2
Q ss_pred CeEEEEccCCCHHHHHHHHhh---cCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCc
Q 013435 203 KNVLVVGCGNSGMEVSLDLCN---YNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDT 279 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~---~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (443)
++|+|||||..|+.+|..|++ .+.+|+++.+++....... +.........
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~--------~~~~~~g~~~------------------- 57 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPS--------NPWVGVGWKE------------------- 57 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGG--------HHHHHHTSSC-------------------
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCC--------ccccccCccC-------------------
Confidence 689999999999999999999 7899999998873221100 0000000000
Q ss_pred cccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC-CcEEeCC--cEEEcCCcEEcccEEEEccCCCCCC
Q 013435 280 SQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA-IKRLTHH--AAEFIDGSIENYDAIILATGYKSNV 354 (443)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~~~~~--~v~~~~g~~~~~D~vi~atG~~~~~ 354 (443)
...+...+.+.+.+.+++++.+ ++.++.+ .+.+.+++++.+|.||+|||.+|+.
T Consensus 58 ---------------------~~~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~ 114 (437)
T 3sx6_A 58 ---------------------RDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAF 114 (437)
T ss_dssp ---------------------HHHHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEECG
T ss_pred ---------------------HHHHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCc
Confidence 0011122234444566777665 6777654 4788888899999999999998875
No 236
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=98.03 E-value=9.3e-06 Score=74.62 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|..|+.+|..|++.|.+|+++.+.+
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 35 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGE 35 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999865
No 237
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=98.02 E-value=1.8e-05 Score=77.57 Aligned_cols=96 Identities=20% Similarity=0.305 Sum_probs=72.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ....++.+
T Consensus 147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~ 194 (449)
T 3kd9_A 147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR-------------------------------R-SFDKEVTD 194 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------T-TSCHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch-------------------------------h-hcCHHHHH
Confidence 456899999999999999999999999999999764311 0 01256677
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+..++. ++++.++.|.+++..+ ....+ ..++ .++.+|.||+|+|.
T Consensus 195 ~l~~~l~~~-v~i~~~~~v~~i~~~~--~v~~v-~~~g-----~~i~~D~Vv~a~G~ 242 (449)
T 3kd9_A 195 ILEEKLKKH-VNLRLQEITMKIEGEE--RVEKV-VTDA-----GEYKAELVILATGI 242 (449)
T ss_dssp HHHHHHTTT-SEEEESCCEEEEECSS--SCCEE-EETT-----EEEECSEEEECSCE
T ss_pred HHHHHHHhC-cEEEeCCeEEEEeccC--cEEEE-EeCC-----CEEECCEEEEeeCC
Confidence 777777777 8889999999987543 22123 3333 68999999999994
No 238
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=98.02 E-value=4.2e-06 Score=80.70 Aligned_cols=43 Identities=26% Similarity=0.217 Sum_probs=39.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCCccccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEK-GVPSLILERANCIASLWQL 75 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~-g~~v~iie~~~~~gg~w~~ 75 (443)
..+||+|||||++|+++|..|++. |.+|+|+|+++.+||.+..
T Consensus 6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~ 49 (399)
T 1v0j_A 6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS 49 (399)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeee
Confidence 368999999999999999999999 9999999999999997654
No 239
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=98.02 E-value=1.6e-05 Score=75.42 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=72.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||+|+.|+.+|..|.+.+.+|+++++.+.+.. ...+.+
T Consensus 162 ~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~-----------------------------------~~~~~~ 206 (360)
T 3ab1_A 162 KGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG-----------------------------------HGKTAH 206 (360)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS-----------------------------------CSHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC-----------------------------------CHHHHH
Confidence 356799999999999999999999999999998763310 013344
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+..++.+++++.+++|.+++..+ +.+ .|.... ..++...+.+|.||+|+|.
T Consensus 207 ~l~~~~~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~-~~g~~~~i~~D~vi~a~G~ 261 (360)
T 3ab1_A 207 EVERARANGTIDVYLETEVASIEESN--GVLTRVHLRS-SDGSKWTVEADRLLILIGF 261 (360)
T ss_dssp SSHHHHHHTSEEEESSEEEEEEEEET--TEEEEEEEEE-TTCCEEEEECSEEEECCCB
T ss_pred HHHHHhhcCceEEEcCcCHHHhccCC--CceEEEEEEe-cCCCeEEEeCCEEEECCCC
Confidence 45556667789999999999998765 322 344431 1223468999999999994
No 240
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=98.01 E-value=1.4e-05 Score=75.99 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=73.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+... .+ + +.......+.+.
T Consensus 166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~------------------~~-------d-~~~~~~~~~~~~ 219 (369)
T 3d1c_A 166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP------------------DA-------D-PSVRLSPYTRQR 219 (369)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC------------------------------------CTTSCCHHHHHH
T ss_pred CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCC------------------CC-------C-CCccCCHHHHHH
Confidence 457999999999999999999999999999987643100 00 0 001112455666
Q ss_pred HHHHHHHcC-CccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEE-EeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFG-LDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVY-LCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~-~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i-~a~~vIiAtG~~~~p~~ 175 (443)
+.+..++.+ ++++.++.|.+++..+ +.+.|++.++ ..+ .+|.||+|+|. .|..
T Consensus 220 l~~~l~~~g~v~~~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~~~d~vi~a~G~--~~~~ 274 (369)
T 3d1c_A 220 LGNVIKQGARIEMNVHYTVKDIDFNN--GQYHISFDSG-----QSVHTPHEPILATGF--DATK 274 (369)
T ss_dssp HHHHHHTTCCEEEECSCCEEEEEEET--TEEEEEESSS-----CCEEESSCCEECCCB--CGGG
T ss_pred HHHHHhhCCcEEEecCcEEEEEEecC--CceEEEecCC-----eEeccCCceEEeecc--CCcc
Confidence 777777776 9999999999997655 5566776654 334 45999999994 4443
No 241
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=98.01 E-value=3.9e-05 Score=71.03 Aligned_cols=96 Identities=17% Similarity=0.119 Sum_probs=70.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||+|+.|+.+|..|.+.+.+|+++++.+.+. .. .
T Consensus 143 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----------------------------------~~-~---- 183 (310)
T 1fl2_A 143 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK----------------------------------AD-Q---- 183 (310)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC----------------------------------SC-H----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC----------------------------------cc-H----
Confidence 45689999999999999999999999999999876321 00 1
Q ss_pred HHHHHHHH-cCCccccceeEEEEEEeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNH-FGLDPVFNTTVVNAEYDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+.+ .+++++.+++|+++..++ +.+ .|...+...++..++.+|.||+|+|.
T Consensus 184 ~~~~~l~~~~gv~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 240 (310)
T 1fl2_A 184 VLQDKLRSLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHNIELAGIFVQIGL 240 (310)
T ss_dssp HHHHHHHTCTTEEEESSEEEEEEEESS--SSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred HHHHHHhhCCCeEEecCCceEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeeCC
Confidence 22333344 588999999999998754 332 35665533345568999999999994
No 242
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=98.00 E-value=7.6e-06 Score=78.97 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=68.1
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcC--CccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYN--ARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGD 278 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g--~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (443)
.+|+|+|||+|..|+.+|..|++.+ .+|+++.+++..... ... ... ..+.
T Consensus 1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~-----------~~v----------------~~g~ 52 (401)
T 3vrd_B 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC-YMS-----------NEV----------------IGGD 52 (401)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS-TTH-----------HHH----------------HHTS
T ss_pred CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc-cCH-----------HHH----------------hcCC
Confidence 3799999999999999999998876 479999887732211 000 000 0000
Q ss_pred ccccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC-CcEEeCC--cEEEcCCcEEcccEEEEccCCCCCC
Q 013435 279 TSQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA-IKRLTHH--AAEFIDGSIENYDAIILATGYKSNV 354 (443)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~~~~~--~v~~~~g~~~~~D~vi~atG~~~~~ 354 (443)
... ..+. .-.+.+...+++++.+ ++.++.+ .+.+.+|.++.+|.+|+|||.+++.
T Consensus 53 ~~~--------------------~~~~-~~~~~~~~~gv~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~ 110 (401)
T 3vrd_B 53 REL--------------------ASLR-VGYDGLRAHGIQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLY 110 (401)
T ss_dssp SCG--------------------GGGE-ECSHHHHHTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEECG
T ss_pred CCH--------------------HHHh-hCHHHHHHCCCEEEEeEEEEEEccCcEEEecccceeecceeeeccCCcccc
Confidence 000 0000 0112233456777776 7788764 4788899999999999999999875
No 243
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=97.99 E-value=4.4e-05 Score=71.49 Aligned_cols=97 Identities=23% Similarity=0.258 Sum_probs=71.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|+.|+.+|..|.+.|.+++++++.+.+. . ..
T Consensus 172 ~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~-----------------------------------~----~~ 212 (338)
T 3itj_A 172 RNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLR-----------------------------------A----ST 212 (338)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------S----CH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccC-----------------------------------C----CH
Confidence 45679999999999999999999999999999876331 0 11
Q ss_pred HHHHHHHH-cCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNH-FGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+.+ .+++++.++.|.+++.+++ ....|.+.+...++..++.+|.||+|+|.
T Consensus 213 ~~~~~l~~~~gv~i~~~~~v~~i~~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 269 (338)
T 3itj_A 213 IMQKRAEKNEKIEILYNTVALEAKGDGK-LLNALRIKNTKKNEETDLPVSGLFYAIGH 269 (338)
T ss_dssp HHHHHHHHCTTEEEECSEEEEEEEESSS-SEEEEEEEETTTTEEEEEECSEEEECSCE
T ss_pred HHHHHHHhcCCeEEeecceeEEEEcccC-cEEEEEEEECCCCceEEEEeCEEEEEeCC
Confidence 22233333 4899999999999988662 23336666533344478999999999994
No 244
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=97.98 E-value=1.7e-05 Score=74.15 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=69.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. .. ..+
T Consensus 151 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----------------------------------~~-~~~-- 193 (325)
T 2q7v_A 151 KGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR----------------------------------AN-KVA-- 193 (325)
T ss_dssp TTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC----------------------------------SC-HHH--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC----------------------------------cc-hHH--
Confidence 34689999999999999999999999999999876321 01 112
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+...++.+++++.+++|+++..++ ....|...+...++..++.+|.||+|+|.
T Consensus 194 -~~~l~~~~gv~i~~~~~v~~i~~~~--~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 247 (325)
T 2q7v_A 194 -QARAFANPKMKFIWDTAVEEIQGAD--SVSGVKLRNLKTGEVSELATDGVFIFIGH 247 (325)
T ss_dssp -HHHHHTCTTEEEECSEEEEEEEESS--SEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred -HHHHHhcCCceEecCCceEEEccCC--cEEEEEEEECCCCcEEEEEcCEEEEccCC
Confidence 2222333588899999999998743 33245555322234468999999999994
No 245
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=97.96 E-value=2.6e-05 Score=72.45 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=73.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
....+++|||+|+.|+.+|..|.+.+.+++++++.+.+. +. .
T Consensus 152 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~----------------------------------~~-~--- 193 (323)
T 3f8d_A 152 FKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK----------------------------------AQ-P--- 193 (323)
T ss_dssp GTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC----------------------------------SC-H---
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC----------------------------------cC-H---
Confidence 455789999999999999999999999999999876431 01 1
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.++....++.+++++.++.|.+++.++ ....|.+.+...++...+.+|.||+|+|.
T Consensus 194 ~~~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 249 (323)
T 3f8d_A 194 IYVETVKKKPNVEFVLNSVVKEIKGDK--VVKQVVVENLKTGEIKELNVNGVFIEIGF 249 (323)
T ss_dssp HHHHHHHTCTTEEEECSEEEEEEEESS--SEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred HHHHHHHhCCCcEEEeCCEEEEEeccC--ceeEEEEEECCCCceEEEEcCEEEEEECC
Confidence 223334444588999999999998764 44456666533334468999999999994
No 246
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=97.96 E-value=1e-05 Score=78.40 Aligned_cols=104 Identities=14% Similarity=0.242 Sum_probs=67.3
Q ss_pred CeEEEEccCCCHHHHHHHHhh---cCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCc
Q 013435 203 KNVLVVGCGNSGMEVSLDLCN---YNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDT 279 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~---~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (443)
++|+|||||.+|+.+|..|++ .|.+|+++.+++.... .......
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~-~~~~~~~-------------------------------- 48 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYF-RPALPHV-------------------------------- 48 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEE-CCSSCCC--------------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCcee-ccchhhc--------------------------------
Confidence 579999999999999999999 8899999999883211 1100000
Q ss_pred cccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC-CcEEeCC--cEEEcCCcE----EcccEEEEccCCCC
Q 013435 280 SQFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA-IKRLTHH--AAEFIDGSI----ENYDAIILATGYKS 352 (443)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~~~~~--~v~~~~g~~----~~~D~vi~atG~~~ 352 (443)
..+. .....+...+.+.+.+.+++++.+ +..++.+ .+.+.+++. +.+|.||+|||..|
T Consensus 49 -~~~~--------------~~~~~~~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~ 113 (409)
T 3h8l_A 49 -AIGV--------------RDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHL 113 (409)
T ss_dssp -CSSC--------------CCCCCEEEEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEE
T ss_pred -ccCC--------------cCHHHHHHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCc
Confidence 0000 000111222333444556777766 6666654 577777653 89999999999988
Q ss_pred CC
Q 013435 353 NV 354 (443)
Q Consensus 353 ~~ 354 (443)
+.
T Consensus 114 ~~ 115 (409)
T 3h8l_A 114 AT 115 (409)
T ss_dssp CG
T ss_pred Cc
Confidence 75
No 247
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=97.94 E-value=2.4e-05 Score=72.47 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=68.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. .. ..+.
T Consensus 142 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----------------------------------~~-~~~~- 185 (311)
T 2q0l_A 142 KNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR----------------------------------CA-PITL- 185 (311)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC----------------------------------SC-HHHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC----------------------------------CC-HHHH-
Confidence 34789999999999999999999999999998876321 01 1222
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
....++.+++++.++.+.+++..+ +.. .|...+...++..++.+|.||+|+|.
T Consensus 186 --~~l~~~~gv~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 239 (311)
T 2q0l_A 186 --EHAKNNDKIEFLTPYVVEEIKGDA--SGVSSLSIKNTATNEKRELVVPGFFIFVGY 239 (311)
T ss_dssp --HHHHTCTTEEEETTEEEEEEEEET--TEEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred --HHHhhCCCeEEEeCCEEEEEECCC--CcEeEEEEEecCCCceEEEecCEEEEEecC
Confidence 222234688899999999998764 322 35554322234458999999999994
No 248
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=97.93 E-value=4.5e-06 Score=83.48 Aligned_cols=40 Identities=30% Similarity=0.486 Sum_probs=37.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC-CCEEEEecCCCCCccc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG-VPSLILERANCIASLW 73 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w 73 (443)
.+||+|||||++||++|..|.+.| .+|+|+|+++.+||.+
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~ 48 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRL 48 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCce
Confidence 468999999999999999999999 9999999999998853
No 249
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=97.92 E-value=5.8e-05 Score=70.19 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=69.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|+.|+.+|..|.+.+.+|+++++.+.+. ....+
T Consensus 154 ~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~-----------------------------------~~~~l-- 196 (319)
T 3cty_A 154 KGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM-----------------------------------CENAY-- 196 (319)
T ss_dssp BTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC-----------------------------------SCHHH--
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC-----------------------------------CCHHH--
Confidence 34689999999999999999999999999999865321 01222
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+.+++++.+++|+++..++. ....|...+...++..++.+|.||+|+|.
T Consensus 197 --~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 250 (319)
T 3cty_A 197 --VQEIKKRNIPYIMNAQVTEIVGDGK-KVTGVKYKDRTTGEEKLIETDGVFIYVGL 250 (319)
T ss_dssp --HHHHHHTTCCEECSEEEEEEEESSS-SEEEEEEEETTTCCEEEECCSEEEECCCE
T ss_pred --HHHHhcCCcEEEcCCeEEEEecCCc-eEEEEEEEEcCCCceEEEecCEEEEeeCC
Confidence 2333467999999999999987641 12235554322234458999999999994
No 250
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=97.92 E-value=7e-06 Score=82.16 Aligned_cols=39 Identities=31% Similarity=0.477 Sum_probs=36.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
.+||+|||||++|+++|..|++.|++|+|+|+++.+||.
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr 42 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR 42 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTT
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence 579999999999999999999999999999999988874
No 251
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=97.91 E-value=2.3e-05 Score=73.41 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=70.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||+|..|+.+|..|.+.|.+|+++++.+.+. ....+
T Consensus 158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~-----------------------------------~~~~~-- 200 (333)
T 1vdc_A 158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR-----------------------------------ASKIM-- 200 (333)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------SCHHH--
T ss_pred CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC-----------------------------------ccHHH--
Confidence 45689999999999999999999999999999876321 00111
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
..+..++.+++++++++|.+++.+++.... .|.+.+...++..++.+|.||+|+|.
T Consensus 201 -~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 257 (333)
T 1vdc_A 201 -QQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGH 257 (333)
T ss_dssp -HHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred -HHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCC
Confidence 123334568889999999999876521032 25554322334478999999999994
No 252
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=97.90 E-value=5.4e-05 Score=70.64 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=72.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|..|+.+|..|.+.+.+++++++.+.+. .. ...
T Consensus 153 ~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~----------------------------------~~-~~~-- 195 (332)
T 3lzw_A 153 AGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR----------------------------------AH-EHS-- 195 (332)
T ss_dssp BTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS----------------------------------SC-HHH--
T ss_pred CCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC----------------------------------cc-HHH--
Confidence 45689999999999999999999999999998876321 01 111
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
...+.+.+++++.++.|.+++..+ +...|...+...++..++.+|.||+|+|.
T Consensus 196 --~~~l~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 248 (332)
T 3lzw_A 196 --VENLHASKVNVLTPFVPAELIGED--KIEQLVLEEVKGDRKEILEIDDLIVNYGF 248 (332)
T ss_dssp --HHHHHHSSCEEETTEEEEEEECSS--SCCEEEEEETTSCCEEEEECSEEEECCCE
T ss_pred --HHHHhcCCeEEEeCceeeEEecCC--ceEEEEEEecCCCceEEEECCEEEEeecc
Confidence 122466799999999999998765 34446666644445578999999999994
No 253
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=97.90 E-value=6.8e-06 Score=81.86 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=38.3
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQ 74 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~ 74 (443)
...+||+|||||++|+++|..|.+.|++|+|+|+.+.+||.+.
T Consensus 11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 53 (504)
T 1sez_A 11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR 53 (504)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 3468999999999999999999999999999999999998653
No 254
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=97.89 E-value=1.4e-05 Score=79.03 Aligned_cols=43 Identities=37% Similarity=0.502 Sum_probs=39.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcC-CCEEEEecCCCCCccccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKG-VPSLILERANCIASLWQL 75 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~~ 75 (443)
+.+||+|||||++|+++|..|.+.| .+|+|+|+.+.+||.|..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence 4689999999999999999999998 799999999999998765
No 255
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=97.89 E-value=2.3e-05 Score=76.32 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=68.7
Q ss_pred CeEEEEccCCCHHHHHHHHhh--cCCccEEEEecCCccccccccCCCccchhhhhhhhchhHHHHHHHHHHHHHHhcCcc
Q 013435 203 KNVLVVGCGNSGMEVSLDLCN--YNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVRLVDQFLLLMSWLMLGDTS 280 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~--~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (443)
++|+|||||..|+.+|..|++ .+.+|+++.+++..... .. +... ..+...
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~-~~-----------~~~~----------------~~g~~~ 54 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT-PA-----------FPHL----------------AMGWRK 54 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG-GG-----------HHHH----------------HHTCSC
T ss_pred CCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcC-CC-----------cchh----------------ccCccC
Confidence 589999999999999999999 67899999988732110 00 0000 000000
Q ss_pred ccCCCCCCCCCccccccCCCcccccccchhhhcCCCeEEecC-CcEEeCC--cEEEcCCcEEcccEEEEccCCCCCCC
Q 013435 281 QFGLIRPKLGPLELKNVSGKTPVLDVGTLAKIRSGNIKVCRA-IKRLTHH--AAEFIDGSIENYDAIILATGYKSNVP 355 (443)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~~~~~--~v~~~~g~~~~~D~vi~atG~~~~~~ 355 (443)
...+...+.+.+.+.+++++.+ +..++.+ .+.+.+++++.+|.+|+|||..++.+
T Consensus 55 --------------------~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~v~~~~g~~i~~d~liiAtG~~~~~p 112 (430)
T 3h28_A 55 --------------------FEDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLVFG 112 (430)
T ss_dssp --------------------GGGSEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEECC
T ss_pred --------------------HHHHHHHHHHHHHhcCCEEEEEEEEEEECCCCEEEECCCcEEECCEEEEcCCcccccC
Confidence 0011112233344457777766 6677654 47788888999999999999998753
No 256
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=97.89 E-value=5.5e-05 Score=74.49 Aligned_cols=103 Identities=22% Similarity=0.261 Sum_probs=72.8
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+ ...++.+.
T Consensus 172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~~-~d~~~~~~ 219 (466)
T 3l8k_A 172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALI-------------------------------TL-EDQDIVNT 219 (466)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------------------TS-CCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCC-------------------------------CC-CCHHHHHH
Confidence 46799999999999999999999999999998764310 00 02455555
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
+.+..+ ++++.+++|.+++..++ +.+.+...+ ..++..++.+|.||+|+|. +|+.
T Consensus 220 l~~~l~---v~i~~~~~v~~i~~~~~-~~v~v~~~~-~~G~~~~i~~D~vi~a~G~--~p~~ 274 (466)
T 3l8k_A 220 LLSILK---LNIKFNSPVTEVKKIKD-DEYEVIYST-KDGSKKSIFTNSVVLAAGR--RPVI 274 (466)
T ss_dssp HHHHHC---CCEECSCCEEEEEEEET-TEEEEEECC-TTSCCEEEEESCEEECCCE--EECC
T ss_pred HHhcCE---EEEEECCEEEEEEEcCC-CcEEEEEEe-cCCceEEEEcCEEEECcCC--Cccc
Confidence 554433 88889999999987542 344566552 0123358999999999994 4443
No 257
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=97.88 E-value=8.1e-06 Score=77.76 Aligned_cols=41 Identities=27% Similarity=0.257 Sum_probs=38.0
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL 75 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 75 (443)
+||+|||||++|+++|..|++.|.+|+|+|+.+.+||....
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 42 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence 68999999999999999999999999999999999987544
No 258
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=97.87 E-value=0.00018 Score=73.13 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=72.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||||+.|+.+|..|.+.|.+|+++++...+. . ...++.++
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~--------------------------------~--~d~~~~~~ 331 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLR--------------------------------G--FDQQMAEK 331 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST--------------------------------T--SCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCcC--------------------------------c--CCHHHHHH
Confidence 4579999999999999999999999999999862110 0 12556677
Q ss_pred HHHHHHHcCCccccceeEEEEEEe-----C--CCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYD-----H--LSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~-----~--~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
+.+..++.|++++.++.+..+... . ..+.+.+..... .++...+.+|.||+|+|.
T Consensus 332 ~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~D~vi~a~G~ 393 (598)
T 2x8g_A 332 VGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYT-DGKKFEEEFETVIFAVGR 393 (598)
T ss_dssp HHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEET-TSCEEEEEESEEEECSCE
T ss_pred HHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeC-CCcEEeccCCEEEEEeCC
Confidence 777788889999999888888643 1 113444443211 123345669999999994
No 259
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=97.86 E-value=9.9e-06 Score=80.38 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=37.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
+.+||+|||||++|+++|+.|.+.|++|+|+|+.+.+||.
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 49 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGR 49 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 3569999999999999999999999999999999999884
No 260
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=97.86 E-value=9.3e-06 Score=79.68 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=37.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
.+||+|||||++|+++|..|.+.|++|+|+|+.+.+||.+
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~ 44 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRT 44 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCce
Confidence 4689999999999999999999999999999999888754
No 261
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=97.85 E-value=1.3e-05 Score=79.22 Aligned_cols=40 Identities=30% Similarity=0.437 Sum_probs=36.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
..+||+|||||++|+++|..|++.|++|+|+|+.+.+||.
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr 54 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGA 54 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTT
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCce
Confidence 4579999999999999999999999999999999988874
No 262
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=97.84 E-value=1.2e-05 Score=77.15 Aligned_cols=41 Identities=32% Similarity=0.314 Sum_probs=38.6
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL 75 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 75 (443)
+||+|||||++|+++|..|.+.|.+|+|+|+++.+||.|+.
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 44 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD 44 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence 68999999999999999999999999999999999998755
No 263
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=97.82 E-value=1.2e-05 Score=79.36 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=36.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCCcc
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG--VPSLILERANCIASL 72 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~~~gg~ 72 (443)
++||+|||||++|+++|+.|.+.| .+|+|+|+.+.+||.
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~ 44 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGK 44 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTT
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCce
Confidence 479999999999999999999999 999999999888874
No 264
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=97.80 E-value=1.9e-05 Score=74.16 Aligned_cols=97 Identities=20% Similarity=0.220 Sum_probs=68.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||+|+.|+.+|..|.+.+.+|+++++.+.+.. . ..+
T Consensus 154 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~----------------------------------~-~~~-- 196 (335)
T 2a87_A 154 RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA----------------------------------S-KIM-- 196 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS----------------------------------C-TTH--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc----------------------------------c-HHH--
Confidence 457899999999999999999999999999998763210 0 011
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.....++.+++++++++|.+++..+ ....|.+.+...++..++.+|.||+|+|.
T Consensus 197 -~~~~~~~~gV~v~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 250 (335)
T 2a87_A 197 -LDRARNNDKIRFLTNHTVVAVDGDT--TVTGLRVRDTNTGAETTLPVTGVFVAIGH 250 (335)
T ss_dssp -HHHHHHCTTEEEECSEEEEEEECSS--SCCEEEEEEETTSCCEEECCSCEEECSCE
T ss_pred -HHHHhccCCcEEEeCceeEEEecCC--cEeEEEEEEcCCCceEEeecCEEEEccCC
Confidence 1123345688999999999998654 22224444322223368999999999994
No 265
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=97.78 E-value=1.3e-05 Score=79.71 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=36.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
..+||+|||||++|+++|..|.+.|++|+|+|+.+.+||.
T Consensus 38 ~~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr 77 (495)
T 2vvm_A 38 GPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR 77 (495)
T ss_dssp CCEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTT
T ss_pred cCCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence 3479999999999999999999999999999999988874
No 266
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=97.74 E-value=9.8e-05 Score=68.19 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=29.9
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.|+|||+|+.|+.+|..+++.|.+|+++.+..
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~ 39 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNT 39 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 69999999999999999999999999998764
No 267
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=97.74 E-value=1.4e-05 Score=77.81 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=31.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+.+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 55799999999999999999999999999999976
No 268
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=97.74 E-value=2.7e-05 Score=76.81 Aligned_cols=43 Identities=37% Similarity=0.558 Sum_probs=38.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCccccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQL 75 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~ 75 (443)
..+||+|||||++|+++|..|.+.|. +|+|+|+.+.+||.+..
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~ 46 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK 46 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence 45799999999999999999999998 89999999989886654
No 269
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=97.73 E-value=2.7e-05 Score=75.88 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=39.4
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL 75 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 75 (443)
..+||+|||+|++|+++|..|++.|.+|+++|+++..||.+..
T Consensus 5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s 47 (433)
T 1d5t_A 5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS 47 (433)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCE
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccc
Confidence 3579999999999999999999999999999999999987654
No 270
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=97.73 E-value=7.3e-05 Score=69.18 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=70.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|+.|+.+|..|.+.+.+++++++.+.+. .. . .
T Consensus 146 ~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~----------------------------------~~-~---~ 187 (315)
T 3r9u_A 146 KNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR----------------------------------AA-P---S 187 (315)
T ss_dssp TTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB----------------------------------SC-H---H
T ss_pred CcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC----------------------------------CC-H---H
Confidence 45689999999999999999999999999998876320 01 1 2
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
++....++.+++++.++.|.+++..+ +.. .|... ...++..++.+|.||+|+|.
T Consensus 188 ~~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~~v~~~-~~~g~~~~~~~D~vv~a~G~ 242 (315)
T 3r9u_A 188 TVEKVKKNEKIELITSASVDEVYGDK--MGVAGVKVK-LKDGSIRDLNVPGIFTFVGL 242 (315)
T ss_dssp HHHHHHHCTTEEEECSCEEEEEEEET--TEEEEEEEE-CTTSCEEEECCSCEEECSCE
T ss_pred HHHHHHhcCCeEEEeCcEEEEEEcCC--CcEEEEEEE-cCCCCeEEeecCeEEEEEcC
Confidence 22334456789999999999998765 232 24444 12234468999999999994
No 271
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=97.71 E-value=2.5e-05 Score=74.24 Aligned_cols=35 Identities=34% Similarity=0.445 Sum_probs=32.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+.+||+|||||++|+++|++|++.|.+|+|+|+..
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 35799999999999999999999999999999975
No 272
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=97.70 E-value=0.00015 Score=72.30 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=70.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+|+|||+|..|+.+|..|++.+.+|+++++.+.+. .. .
T Consensus 354 ~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~----------------------------------~~-----~ 394 (521)
T 1hyu_A 354 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK----------------------------------AD-----Q 394 (521)
T ss_dssp BTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC----------------------------------SC-----H
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC----------------------------------cC-----H
Confidence 45689999999999999999999999999999876321 01 1
Q ss_pred HHHHHHHH-cCCccccceeEEEEEEeCCCCeE-EEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNH-FGLDPVFNTTVVNAEYDHLSRLW-RVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~-~~~~v~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+...+ .+++++.++.++++..++ +.+ .+...+...++..++.+|.||+|+|.
T Consensus 395 ~l~~~l~~~~gV~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 451 (521)
T 1hyu_A 395 VLQDKVRSLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHSVALAGIFVQIGL 451 (521)
T ss_dssp HHHHHHTTCTTEEEECSEEEEEEEECS--SSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred HHHHHHhcCCCcEEEeCCEEEEEEcCC--CcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence 23333444 488899999999998754 332 35555543445578999999999994
No 273
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=97.69 E-value=1.9e-05 Score=78.53 Aligned_cols=42 Identities=31% Similarity=0.294 Sum_probs=38.4
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
...+||+|||||++|+++|..|.+.|.+|+|+|+.+.+||.+
T Consensus 31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~ 72 (498)
T 2iid_A 31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV 72 (498)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCce
Confidence 346799999999999999999999999999999999888854
No 274
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=97.68 E-value=0.00011 Score=76.08 Aligned_cols=97 Identities=16% Similarity=0.107 Sum_probs=69.6
Q ss_pred CCeEEEC--CCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 35 PGPVIVG--AGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 35 ~dvvIIG--~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
.+|+||| +|..|+.+|..|.+.|.+|+++++.+.+.... .......
T Consensus 524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~--------------------------------~~~~~~~ 571 (690)
T 3k30_A 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT--------------------------------NNTFEVN 571 (690)
T ss_dssp SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG--------------------------------GGGTCHH
T ss_pred CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc--------------------------------ccchhHH
Confidence 4599999 99999999999999999999999876542110 0011234
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+++.|++++.+++|++++.+ ...+... ..++..++.+|.||+|+|.
T Consensus 572 ~l~~~l~~~GV~i~~~~~V~~i~~~----~~~v~~~--~~~~~~~i~aD~VV~A~G~ 622 (690)
T 3k30_A 572 RIQRRLIENGVARVTDHAVVAVGAG----GVTVRDT--YASIERELECDAVVMVTAR 622 (690)
T ss_dssp HHHHHHHHTTCEEEESEEEEEEETT----EEEEEET--TTCCEEEEECSEEEEESCE
T ss_pred HHHHHHHHCCCEEEcCcEEEEEECC----eEEEEEc--cCCeEEEEECCEEEECCCC
Confidence 5556667789999999999998743 2223321 1112368999999999994
No 275
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=97.68 E-value=5.3e-05 Score=71.38 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=31.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|..|+.+|..|++.|.+|+++.+++
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 36 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEA 36 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 479999999999999999999999999999886
No 276
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=97.67 E-value=2.5e-05 Score=76.31 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=39.9
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL 75 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 75 (443)
...+||+|||+|.+|+++|..|++.|.+|+++|+++..||.+..
T Consensus 18 ~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s 61 (475)
T 3p1w_A 18 GEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETAS 61 (475)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccc
Confidence 34589999999999999999999999999999999999986544
No 277
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=97.64 E-value=6.5e-05 Score=72.67 Aligned_cols=35 Identities=17% Similarity=0.422 Sum_probs=31.8
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
..+|+|||||.+|+.+|..|++.|.+|+++.+.+.
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~ 61 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA 61 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 35799999999999999999999999999998873
No 278
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=97.61 E-value=6.2e-05 Score=70.81 Aligned_cols=36 Identities=31% Similarity=0.333 Sum_probs=33.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI 69 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~ 69 (443)
|+||+|||||++|+.+|..|++.|.+|+|+|+.+..
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~ 36 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKR 36 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTS
T ss_pred CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCc
Confidence 479999999999999999999999999999997743
No 279
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=97.59 E-value=0.00018 Score=66.62 Aligned_cols=102 Identities=25% Similarity=0.252 Sum_probs=65.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLT 112 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (443)
...+++|||+|+.|+.+|..|.+.|.+|+++++....- .... .
T Consensus 151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~----------------------------------~~~~-~-- 193 (314)
T 4a5l_A 151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFR----------------------------------ASKT-M-- 193 (314)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC----------------------------------SCHH-H--
T ss_pred CCCeEEEECCChHHHHHHHHHHHhCCeeeeeccccccc----------------------------------ccch-h--
Confidence 34679999999999999999999999999998764210 0111 1
Q ss_pred HHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCCCCCcc
Q 013435 113 YLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGENAEEVV 175 (443)
Q Consensus 113 ~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~~~p~~ 175 (443)
........+...+....+..+..... ..-.+...+...++...+.+|.|++|+| ..|+.
T Consensus 194 -~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~i~~d~vi~a~G--~~pn~ 252 (314)
T 4a5l_A 194 -QERVLNHPKIEVIWNSELVELEGDGD-LLNGAKIHNLVSGEYKVVPVAGLFYAIG--HSPNS 252 (314)
T ss_dssp -HHHHHTCTTEEEECSEEEEEEEESSS-SEEEEEEEETTTCCEEEEECSEEEECSC--EEESC
T ss_pred -hhhhhcccceeeEeeeeeEEEEeeee-ccceeEEeecccccceeeccccceEecc--cccCh
Confidence 11222233444556666666665442 1112333333333447899999999999 45543
No 280
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=97.51 E-value=0.00017 Score=69.38 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+.+|..|++.|.+|+++.+.+
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~ 37 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 369999999999999999999999999999887
No 281
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=97.49 E-value=5.1e-05 Score=71.66 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=31.1
Q ss_pred CeEEECCCHHHHHHHHHHHHcC------CCEEEEecCCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKG------VPSLILERANC 68 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g------~~v~iie~~~~ 68 (443)
||+|||||++|+++|++|++.| .+|+|+|+...
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence 8999999999999999999998 89999999863
No 282
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=97.48 E-value=5.4e-05 Score=77.88 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=38.4
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASL 72 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 72 (443)
....+||+|||+|++|+++|..|.+.|++|+|+|+.+.+||.
T Consensus 104 ~~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~ 145 (662)
T 2z3y_A 104 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR 145 (662)
T ss_dssp SSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTT
T ss_pred ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 356689999999999999999999999999999999888874
No 283
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.45 E-value=6.9e-05 Score=78.66 Aligned_cols=42 Identities=29% Similarity=0.354 Sum_probs=38.4
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLW 73 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 73 (443)
...+||+|||+|++|+++|..|.+.|++|+|+|+.+.+||.+
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~ 317 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV 317 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCce
Confidence 456799999999999999999999999999999999888743
No 284
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=97.42 E-value=0.00015 Score=67.58 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhc--CCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNY--NARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~--g~~Vt~i~r~~ 235 (443)
..|+|||+|.+|+-+|..|++. |.+|+++.+.+
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~ 114 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV 114 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4799999999999999999997 99999999886
No 285
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=97.41 E-value=0.00038 Score=68.98 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=33.1
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
...+|+|||||.+|+.+|..|++.|.+|+++.+.+.
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~ 126 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK 126 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc
Confidence 357899999999999999999999999999998873
No 286
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=97.39 E-value=0.00067 Score=72.73 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=70.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
..+++|||+|+.|+.+|..|.+.|.+|+|+++.+.+. ..
T Consensus 284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~------------------------------------~~----- 322 (965)
T 2gag_A 284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS------------------------------------AA----- 322 (965)
T ss_dssp CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC------------------------------------HH-----
T ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc------------------------------------hh-----
Confidence 3689999999999999999999999999999876321 11
Q ss_pred HHHHHHHcCCccccceeEEEEEEe-CCCCeEEEEEee--cC--CCcEEEEEeCEEEEccCCCCCCc
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYD-HLSRLWRVKTQQ--GL--KQEETVYLCQWLIVATGENAEEV 174 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~-~~~~~~~v~~~~--~~--~~~~~~i~a~~vIiAtG~~~~p~ 174 (443)
.+.+++.|++++.++.|+++... ++ ....|+..+ .. .++..++.+|.||+|+| ..|+
T Consensus 323 -~~~l~~~GV~v~~~~~v~~i~~~~~~-~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G--~~P~ 384 (965)
T 2gag_A 323 -AAQAVADGVQVISGSVVVDTEADENG-ELSAIVVAELDEARELGGTQRFEADVLAVAGG--FNPV 384 (965)
T ss_dssp -HHHHHHTTCCEEETEEEEEEEECTTS-CEEEEEEEEECTTCCEEEEEEEECSEEEEECC--EEEC
T ss_pred -HHHHHhCCeEEEeCCEeEEEeccCCC-CEEEEEEEeccccCCCCceEEEEcCEEEECCC--cCcC
Confidence 33456779999999999999874 21 322344443 10 12336899999999999 4444
No 287
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=97.38 E-value=0.00025 Score=65.63 Aligned_cols=32 Identities=19% Similarity=0.507 Sum_probs=30.3
Q ss_pred eEEEEccCCCHHHHHHHHhhc--CCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNY--NARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~--g~~Vt~i~r~~ 235 (443)
+|+|||+|.+|+-+|..|++. |.+|+++.+.+
T Consensus 67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~ 100 (326)
T 2gjc_A 67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 100 (326)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCc
Confidence 799999999999999999998 99999999876
No 288
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=97.38 E-value=0.0003 Score=70.20 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=32.0
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+|+|||+|..|+.+|..|++.|.+|+++.+.+
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~ 140 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence 4689999999999999999999999999999886
No 289
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=97.34 E-value=0.00023 Score=69.65 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=62.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
...+|+|||||..|+-+|..+.+.|. +|+++++.+... ++. ...+
T Consensus 263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~------------------------------~p~--~~~e-- 308 (456)
T 2vdc_G 263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKN------------------------------MPG--SQRE-- 308 (456)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTT------------------------------CSS--CHHH--
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccC------------------------------CCC--CHHH--
Confidence 35679999999999999999999998 499998875320 011 1122
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEE---E----eecC------CCcEEEEEeCEEEEccCC
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVK---T----QQGL------KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~---~----~~~~------~~~~~~i~a~~vIiAtG~ 169 (443)
.+.+.+.|+++++++.+.++..++.-..+.+. . .+|. .++..++.+|.||+|+|.
T Consensus 309 ---~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~ 376 (456)
T 2vdc_G 309 ---VAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGF 376 (456)
T ss_dssp ---HHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCE
T ss_pred ---HHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCC
Confidence 13355668888887777666532100001111 1 0110 123368999999999994
No 290
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=97.32 E-value=0.00044 Score=67.90 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=32.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANC 68 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~ 68 (443)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 196 ~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~ 231 (464)
T 2xve_A 196 KDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 231 (464)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence 457899999999999999999999999999998764
No 291
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=97.30 E-value=0.00031 Score=66.99 Aligned_cols=141 Identities=15% Similarity=0.075 Sum_probs=73.8
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCCccccccccCCCccchhhhhhhhchhH-HHHHHHHHHHHHHhcCcc
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTVHVLPQEMIGRSTFGLSMCLLKWFPVR-LVDQFLLLMSWLMLGDTS 280 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 280 (443)
..+|+|||+|.+|+.+|..|++.|.+|+++.+++.. .. .+ ....+.......+... +.+.+. .. .....
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~---~~-~~-~~~~l~~~~~~~l~~~g~~~~~~----~~-~~~~~ 80 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL---RA-FG-AGIYLWHNGLRVLEGLGALDDVL----QG-SHTPP 80 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC---CC-CS-SEEEEEHHHHHHHHHTTCHHHHH----TT-CBCCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC---CC-CC-ceEEeCccHHHHHHHcCCHHHHH----hh-CCCcc
Confidence 468999999999999999999999999999987731 11 00 0111111111111100 001110 00 00000
Q ss_pred ccCCCCCCCCCcccc-------ccCCCcccccccchhhhcCCCeEEecC--CcEEeCC-cEEEcCCcEEcccEEEEccCC
Q 013435 281 QFGLIRPKLGPLELK-------NVSGKTPVLDVGTLAKIRSGNIKVCRA--IKRLTHH-AAEFIDGSIENYDAIILATGY 350 (443)
Q Consensus 281 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~~~~~-~v~~~~g~~~~~D~vi~atG~ 350 (443)
...+..+ +..... ........+...+.+.+.+.+++++.+ ++++..+ .+.+.+|+++.+|.||.|+|.
T Consensus 81 ~~~~~~~--g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG~ 158 (379)
T 3alj_A 81 TYETWMH--NKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGV 158 (379)
T ss_dssp CEEEEET--TEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCCT
T ss_pred ceEEEeC--CceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCCc
Confidence 0000000 000000 000001122333455555567888776 6665433 577788889999999999999
Q ss_pred CCCC
Q 013435 351 KSNV 354 (443)
Q Consensus 351 ~~~~ 354 (443)
.+..
T Consensus 159 ~s~v 162 (379)
T 3alj_A 159 GSKV 162 (379)
T ss_dssp TCHH
T ss_pred cHHH
Confidence 8754
No 292
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=97.22 E-value=0.0018 Score=63.45 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=30.4
Q ss_pred cCCCeEEECCCHHHHHHHHHHH--------------------HcCC-CEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLT--------------------EKGV-PSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~--------------------~~g~-~v~iie~~~ 67 (443)
...+|+|||+|..|+.+|..|+ +.+. +|+|+++..
T Consensus 144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~ 199 (460)
T 1cjc_A 144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 199 (460)
T ss_dssp TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCC
Confidence 3568999999999999999999 5677 699999876
No 293
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=97.20 E-value=0.0013 Score=60.74 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=32.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANC 68 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~ 68 (443)
..+|+|||||+.|+.+|..|.+.|.+|+|+++.+.
T Consensus 145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 179 (312)
T 4gcm_A 145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE 179 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence 46899999999999999999999999999998764
No 294
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=97.19 E-value=0.0001 Score=73.81 Aligned_cols=37 Identities=41% Similarity=0.397 Sum_probs=33.5
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI 69 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~ 69 (443)
...||+||||+|++|+.+|.+|++ |.+|+|+|+....
T Consensus 24 ~~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~ 60 (536)
T 1ju2_A 24 EGSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred cCcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence 356999999999999999999999 9999999997643
No 295
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=97.16 E-value=0.00081 Score=69.90 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=67.4
Q ss_pred CCCeEEEC--CCHHHHHHHHHHHHcCCCEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 013435 34 VPGPVIVG--AGPSGLATAACLTEKGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFL 111 (443)
Q Consensus 34 ~~dvvIIG--~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (443)
..+|+||| ||..|+.+|..|.+.|.+|+++++.+ +...... . .. .
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~--------------------------~--~~----~ 574 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHF--------------------------T--LE----Y 574 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHH--------------------------T--TC----H
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccc--------------------------c--cc----H
Confidence 45799999 99999999999999999999999876 4210000 0 01 2
Q ss_pred HHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEe--ecC--------------CCcEEEEEeCEEEEccCC
Q 013435 112 TYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQ--QGL--------------KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 112 ~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~--~~~--------------~~~~~~i~a~~vIiAtG~ 169 (443)
..+.+.+++.|++++.++.|++++. +...+... ++. .+.+.++.+|.||+|+|.
T Consensus 575 ~~~~~~l~~~GV~i~~~~~v~~i~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~ 644 (729)
T 1o94_A 575 PNMMRRLHELHVEELGDHFCSRIEP----GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR 644 (729)
T ss_dssp HHHHHHHHHTTCEEECSEEEEEEET----TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCE
T ss_pred HHHHHHHHhCCCEEEcCcEEEEEEC----CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCC
Confidence 3445556677999999999999863 23333321 110 011245999999999993
No 296
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=97.14 E-value=0.0021 Score=62.91 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=70.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHc--------------------CC-CEEEEecCCCCCcccccCCCCceeeecCCcccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEK--------------------GV-PSLILERANCIASLWQLKTYDRLRLHLPKQFCQ 91 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~--------------------g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~ 91 (443)
...+|+|||+|..|+.+|..|++. |. +|+|+++...+...+.. ..+ ..+..
T Consensus 146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~---~el-----rel~~ 217 (456)
T 1lqt_A 146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTT---LEL-----RELAD 217 (456)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCH---HHH-----HHGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccCh---HHH-----HHhhc
Confidence 356799999999999999999874 54 89999987633111100 000 00000
Q ss_pred CCCCC---CCCCCC-CC-------C-CHHHHHHHHHHHHHH------cCCccccceeEEEEEEeCCCCeEEEEEe----e
Q 013435 92 LPLMP---FPSNFP-TY-------P-TKQQFLTYLETYTNH------FGLDPVFNTTVVNAEYDHLSRLWRVKTQ----Q 149 (443)
Q Consensus 92 ~~~~~---~~~~~~-~~-------~-~~~~~~~~l~~~~~~------~~~~v~~~~~V~~i~~~~~~~~~~v~~~----~ 149 (443)
++... .+.++. .. + ....+.+.+.+++.+ .++.+++++.+.++..++.-..+.+... +
T Consensus 218 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~ 297 (456)
T 1lqt_A 218 LDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSD 297 (456)
T ss_dssp CTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEEC
T ss_pred CCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCC
Confidence 11000 000000 00 0 012223455555544 6788899999998875421112333211 0
Q ss_pred c-------CCCcEEEEEeCEEEEccCCCCC
Q 013435 150 G-------LKQEETVYLCQWLIVATGENAE 172 (443)
Q Consensus 150 ~-------~~~~~~~i~a~~vIiAtG~~~~ 172 (443)
+ ..++..++.||.||+|+|..+.
T Consensus 298 ~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~ 327 (456)
T 1lqt_A 298 GSGRVAAKDTGEREELPAQLVVRSVGYRGV 327 (456)
T ss_dssp SSSSEEEEEEEEEEEEECSEEEECSCEECC
T ss_pred CcccccccCCCceEEEEcCEEEEccccccC
Confidence 0 0123367999999999996433
No 297
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=97.14 E-value=0.00027 Score=70.99 Aligned_cols=36 Identities=42% Similarity=0.611 Sum_probs=33.1
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
...||+||||+|++|+.+|.+|++.|.+|+|+|+..
T Consensus 5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~ 40 (546)
T 1kdg_A 5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 40 (546)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 356899999999999999999999999999999975
No 298
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=97.07 E-value=0.00038 Score=68.06 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~ 59 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN 59 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 479999999999999999999999999999876
No 299
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=97.05 E-value=0.0014 Score=63.88 Aligned_cols=35 Identities=14% Similarity=0.013 Sum_probs=32.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCC-EEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVP-SLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~-v~iie~~~ 67 (443)
...+|+|||+|.+|+-+|..|.+.+.+ |+++++.+
T Consensus 211 ~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~ 246 (447)
T 2gv8_A 211 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG 246 (447)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred CCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence 467899999999999999999999998 99998875
No 300
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=97.05 E-value=0.00082 Score=69.23 Aligned_cols=124 Identities=16% Similarity=0.049 Sum_probs=64.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEec--CCCCCcc--c-ccC----CCCceeeecCCccccCCCCCCCCCCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILER--ANCIASL--W-QLK----TYDRLRLHLPKQFCQLPLMPFPSNFPTY 104 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~--~~~~gg~--w-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (443)
..+|+|||||+.|+.+|..|.+.|.+++++-. ....|.. + ... .++.... ......-+...+ ..+...
T Consensus 494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~v~l~~~~~--~~l~~~ 570 (671)
T 1ps9_A 494 GNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPR-SPRQIVMLQRKA--SKPGQG 570 (671)
T ss_dssp CSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCC-CSSEEEEECSSC--SCTTTT
T ss_pred CCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCC-CCcEEEEEEecc--hhhccc
Confidence 46899999999999999999998876653200 0000000 0 000 0000000 000000000000 000000
Q ss_pred CCHHHHHHHHHHHHHHcCCccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCC
Q 013435 105 PTKQQFLTYLETYTNHFGLDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGE 169 (443)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~ 169 (443)
. ......++.+..++.|++++.+++|++++. +.+.++ .+ ++..++.+|.||+|+|.
T Consensus 571 l-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~----~~v~~~-~~---G~~~~i~~D~Vi~a~G~ 626 (671)
T 1ps9_A 571 L-GKTTGWIHRTTLLSRGVKMIPGVSYQKIDD----DGLHVV-IN---GETQVLAVDNVVICAGQ 626 (671)
T ss_dssp S-CTTTHHHHHHHHHHTTCEEECSCEEEEEET----TEEEEE-ET---TEEEEECCSEEEECCCE
T ss_pred c-ccccHHHHHHHHHhcCCEEEeCcEEEEEeC----CeEEEe-cC---CeEEEEeCCEEEECCCc
Confidence 0 112234455666778999999999998872 333343 22 23468999999999993
No 301
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=97.04 E-value=0.00031 Score=67.93 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=31.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999886
No 302
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=97.03 E-value=0.00028 Score=70.49 Aligned_cols=38 Identities=32% Similarity=0.325 Sum_probs=32.0
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHH-cCCCEEEEecCCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTE-KGVPSLILERANC 68 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~-~g~~v~iie~~~~ 68 (443)
....||+||||+|++|+.+|.+|++ .+++|+|+|+...
T Consensus 14 ~~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~ 52 (526)
T 3t37_A 14 HAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE 52 (526)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred CCCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence 3457999999999999999999998 5789999999753
No 303
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.03 E-value=0.0031 Score=68.05 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=64.7
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCcccccCCCCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGV-PSLILERANCIASLWQLKTYDRLRLHLPKQFCQLPLMPFPSNFPTYPTKQQFLTY 113 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (443)
.+|+|||||..|+.+|..+.+.|. +|+++++.+.. .++. ...++
T Consensus 333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~------------------------------~~~~--~~~e~--- 377 (1025)
T 1gte_A 333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV------------------------------NIRA--VPEEV--- 377 (1025)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG------------------------------GCCS--CHHHH---
T ss_pred CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChh------------------------------hCCC--CHHHH---
Confidence 489999999999999999999997 89999986510 0000 12222
Q ss_pred HHHHHHHcCCccccceeEEEEEEeCCCCeEE-EEEee------cC----CCcEEEEEeCEEEEccCC
Q 013435 114 LETYTNHFGLDPVFNTTVVNAEYDHLSRLWR-VKTQQ------GL----KQEETVYLCQWLIVATGE 169 (443)
Q Consensus 114 l~~~~~~~~~~v~~~~~V~~i~~~~~~~~~~-v~~~~------~~----~~~~~~i~a~~vIiAtG~ 169 (443)
+.+.+.|++++.++.+.++...+ +.+. |++.+ +. .++..++.+|.||+|+|.
T Consensus 378 --~~~~~~Gv~~~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~ 440 (1025)
T 1gte_A 378 --ELAKEEKCEFLPFLSPRKVIVKG--GRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 440 (1025)
T ss_dssp --HHHHHTTCEEECSEEEEEEEEET--TEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred --HHHHHcCCEEEeCCCceEEEccC--CeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCC
Confidence 24556799988888888887643 3321 22211 00 112358999999999994
No 304
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=97.02 E-value=0.00062 Score=68.12 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHh-hcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLC-NYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~-~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+.+|..|+ +.|.+|+++.+.+
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~ 42 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKAD 42 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCC
Confidence 47999999999999999999 8999999999876
No 305
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=97.00 E-value=0.0013 Score=65.76 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=31.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|.+.|.+|+++.+++
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~ 42 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGE 42 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 579999999999999999999999999999876
No 306
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=96.99 E-value=0.0011 Score=63.66 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=31.6
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~ 40 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR 40 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4799999999999999999999999999998863
No 307
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=96.98 E-value=0.00071 Score=68.31 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=40.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANCIASLWQL 75 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 75 (443)
+.||++|+|+|..|..+|..|++.|.+|+++|++++.||.|+.
T Consensus 7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~ 49 (650)
T 1vg0_A 7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS 49 (650)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcccc
Confidence 4699999999999999999999999999999999999998876
No 308
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=96.97 E-value=0.0013 Score=65.82 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+.+|..|.+.|.+|+++.+++
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~ 54 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAAS 54 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 579999999999999999999999999999876
No 309
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=96.92 E-value=0.0014 Score=62.82 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=32.5
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
..+|+|||+|.+|+-+|..|++.|.+|+++.|.+.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46899999999999999999999999999999873
No 310
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=96.88 E-value=0.00045 Score=69.60 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=31.2
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.|.+.
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~ 83 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE 83 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 4799999999999999999999999999998873
No 311
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=96.86 E-value=0.00092 Score=67.54 Aligned_cols=33 Identities=18% Similarity=0.458 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-.|+|||||..|+++|..+++.|.+|.++.+.+
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~ 61 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI 61 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence 479999999999999999999999999999874
No 312
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=96.77 E-value=0.0015 Score=65.70 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-.|+|||||..|+++|..+++.|.+|.++.+.+
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~ 60 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA 60 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence 479999999999999999999999999999874
No 313
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=96.76 E-value=0.00039 Score=71.10 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC--------CCEEEEecCC-CC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG--------VPSLILERAN-CI 69 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g--------~~v~iie~~~-~~ 69 (443)
.++|+|||||++|+++|+.|.+.| ++|+|+|+.+ .+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 468999999999999999999998 9999999998 78
No 314
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=96.75 E-value=0.0013 Score=57.19 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=32.4
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEec
Q 013435 199 LFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRD 234 (443)
Q Consensus 199 ~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~ 234 (443)
...+++|+|||||.+|...+..|.+.|++|+++.+.
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 356899999999999999999999999999999643
No 315
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=96.73 E-value=0.0019 Score=61.84 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=32.4
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
..+|+|||+|.+|+-+|..|++.|.+|+++.+.+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 39 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 45899999999999999999999999999998874
No 316
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=96.73 E-value=0.00068 Score=65.30 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=32.2
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
+.-+|+|||+|.+|+-+|..|++.|.+|+++.|.+
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~ 56 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK 56 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45689999999999999999999999999999987
No 317
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=96.72 E-value=0.00077 Score=67.82 Aligned_cols=36 Identities=36% Similarity=0.354 Sum_probs=32.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcC-CCEEEEecCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKG-VPSLILERANC 68 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~~ 68 (443)
..||+||||||.+|+.+|.+|++.+ .+|+|+|+...
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 3489999999999999999999997 79999999765
No 318
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=96.69 E-value=0.0023 Score=59.65 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=31.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~ 35 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHHCCCcEEEEECCC
Confidence 479999999999999999999999999999886
No 319
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=96.65 E-value=0.0014 Score=65.08 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=33.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI 69 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~ 69 (443)
.||++|||+|++|+.+|..|.+.|.+|+|+|+....
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~ 40 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW 40 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 479999999999999999999999999999997743
No 320
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=96.65 E-value=0.002 Score=64.95 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-+|+|||||..|+++|..+++.|.+|.++.+.+
T Consensus 22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~ 54 (641)
T 3cp8_A 22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDL 54 (641)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence 489999999999999999999999999999874
No 321
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=96.63 E-value=0.003 Score=60.55 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=31.1
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
+|+|||+|++|+-+|..|++.|.+|+++.|++.
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 799999999999999999999999999998773
No 322
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=96.62 E-value=0.0023 Score=59.90 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=30.5
Q ss_pred CeEEEEccCCCHHHHHHHHhh---cCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCN---YNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~---~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++ .|.+|+++.+++
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~ 37 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD 37 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence 379999999999999999999 899999999875
No 323
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=96.60 E-value=0.0048 Score=62.18 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=31.2
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+.+|..|++.|.+|+++.+.+
T Consensus 127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~ 159 (571)
T 1y0p_A 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP 159 (571)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999998877
No 324
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=96.56 E-value=0.0022 Score=64.73 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=32.0
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~ 56 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA 56 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence 4689999999999999999999999999999876
No 325
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=96.56 E-value=0.0012 Score=66.50 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCccccceeEEEEEEeC---CCCeEEEEEeecCCCcEEEEEeCE-EEEccCCCCCCccCCCCCC
Q 013435 110 FLTYLETYTNHFGLDPVFNTTVVNAEYDH---LSRLWRVKTQQGLKQEETVYLCQW-LIVATGENAEEVVPYIEGM 181 (443)
Q Consensus 110 ~~~~l~~~~~~~~~~v~~~~~V~~i~~~~---~~~~~~v~~~~~~~~~~~~i~a~~-vIiAtG~~~~p~~p~~~g~ 181 (443)
...|+....++.++++.+++.|++|..+. +....-|+..+. .+...+++|++ ||+|+|+...|.+..+-|+
T Consensus 229 a~ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~-~G~~~~v~A~kEVILsAGa~~SPqLL~lSGI 303 (583)
T 3qvp_A 229 AREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTH-KGNTHNVYAKHEVLLAAGSAVSPTILEYSGI 303 (583)
T ss_dssp HHHHTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESS-TTCEEEEEEEEEEEECSCTTTHHHHHHHTTB
T ss_pred HHHHHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEec-CCcEEEEEECCEEEEeCCccCCHHHHHHcCC
Confidence 34455544556688889999999998873 112223444321 33557899974 9999998777766544443
No 326
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=96.45 E-value=0.0018 Score=64.21 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=33.1
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERANC 68 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~ 68 (443)
..||++|||+|++|+.+|.+|.+.|.+|+|+|+...
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 458999999999999999999999999999999753
No 327
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=96.44 E-value=0.0026 Score=63.19 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=31.2
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence 479999999999999999999999999999886
No 328
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=96.40 E-value=0.0032 Score=60.20 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 35 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 369999999999999999999999999999877
No 329
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=96.37 E-value=0.0039 Score=59.20 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=31.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 579999999999999999999999999999875
No 330
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=96.31 E-value=0.00062 Score=65.15 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=31.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus 5 ~dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~ 37 (397)
T 3cgv_A 5 YDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP 37 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 379999999999999999999999999999987
No 331
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=96.31 E-value=0.0057 Score=61.57 Aligned_cols=33 Identities=36% Similarity=0.475 Sum_probs=31.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~ 154 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP 154 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 379999999999999999999999999999887
No 332
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=96.30 E-value=0.0039 Score=59.69 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhh-cC-CccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCN-YN-ARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~-~g-~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++ .| .+|+++.+.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 479999999999999999999 99 9999999876
No 333
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=96.30 E-value=0.0012 Score=66.37 Aligned_cols=36 Identities=42% Similarity=0.403 Sum_probs=32.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHH-cCCCEEEEecCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTE-KGVPSLILERANCI 69 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~-~g~~v~iie~~~~~ 69 (443)
.||+||||||.+|+.+|.+|++ .+.+|+|+|+....
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 4899999999999999999998 58999999996543
No 334
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=96.25 E-value=0.0026 Score=64.27 Aligned_cols=36 Identities=33% Similarity=0.453 Sum_probs=32.8
Q ss_pred cCCCeEEECCCHHHHHHHHHHHH-cCCCEEEEecCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTE-KGVPSLILERANC 68 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~-~g~~v~iie~~~~ 68 (443)
..||++|||+|++|+.+|.+|.+ .|.+|+++|+...
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~ 59 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCc
Confidence 45899999999999999999999 7999999999754
No 335
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=96.20 E-value=0.0024 Score=63.91 Aligned_cols=37 Identities=30% Similarity=0.332 Sum_probs=33.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEK-GVPSLILERANCI 69 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~-g~~v~iie~~~~~ 69 (443)
+.||++|||+|++|+.+|.+|.+. +.+|+++|+....
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence 458999999999999999999998 8999999997543
No 336
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=96.16 E-value=0.003 Score=61.70 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=31.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~ 39 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP 39 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 379999999999999999999999999999887
No 337
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=96.15 E-value=0.013 Score=58.56 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~ 49 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAG 49 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999876
No 338
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=96.08 E-value=0.0059 Score=48.95 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=31.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
....|+|+|+|..|..+|..|.+.|++++++|+++
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 34579999999999999999999999999999875
No 339
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=95.91 E-value=0.002 Score=63.81 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=32.3
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+.
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~ 46 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQ 46 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 35799999999999999999999999999999873
No 340
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=95.85 E-value=0.011 Score=58.57 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=31.5
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
-.|+|||+|..|+-+|..|++.|.+|+++.+.+.
T Consensus 42 ~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~ 75 (510)
T 4at0_A 42 ADVVVAGYGIAGVAASIEAARAGADVLVLERTSG 75 (510)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3699999999999999999999999999998873
No 341
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=95.79 E-value=0.012 Score=46.99 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=31.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+..++|+|+|..|..+|..|.+.|++++++|+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4579999999999999999999999999999864
No 342
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=95.73 E-value=0.011 Score=59.01 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=31.3
Q ss_pred CCeEEEEccCCCHHHHHHHHhh------------cCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCN------------YNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~------------~g~~Vt~i~r~~ 235 (443)
..+|+|||||.+|.-+|..|++ .|.+|+++.+.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~ 52 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD 52 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence 4689999999999999999999 899999999865
No 343
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=95.71 E-value=0.016 Score=57.87 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=31.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.|++.
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~ 39 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPG 39 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4799999999999999999999999999999873
No 344
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=95.64 E-value=0.0021 Score=63.71 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=32.2
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+.
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~ 45 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVE 45 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 35799999999999999999999999999999873
No 345
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=95.62 E-value=0.01 Score=48.50 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
..+|+|+|+|..|..+|..|.+.|.+|+++|+++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3469999999999999999999999999999865
No 346
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=95.53 E-value=0.0054 Score=54.79 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=30.6
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.|+|||+|++|+-+|..|++.|.+|+++.+++
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 59999999999999999999999999999876
No 347
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=95.52 E-value=0.049 Score=54.77 Aligned_cols=34 Identities=18% Similarity=0.484 Sum_probs=31.6
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+|+|||+|..|+.+|..|++.|.+|+++.+.+
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~ 159 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 159 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3579999999999999999999999999999887
No 348
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=95.29 E-value=0.011 Score=45.33 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=30.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC-CCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG-VPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~ 67 (443)
+.+|+|+|+|..|..++..|.+.| ++++++++.+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 346999999999999999999999 8999999864
No 349
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=95.29 E-value=0.0099 Score=58.70 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=29.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|..|+.+|..|++. .+|+++.+.+
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~ 140 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERG 140 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTS
T ss_pred CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCC
Confidence 4799999999999999999999 9999998876
No 350
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=95.20 E-value=0.028 Score=45.64 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=30.4
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
..++|+|+|..|..+|..|.+.|.+++++|+++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 369999999999999999999999999999863
No 351
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=95.14 E-value=0.053 Score=54.10 Aligned_cols=32 Identities=22% Similarity=0.556 Sum_probs=29.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-.|+|||+|..|+-+|..|++ |.+|+++.+.+
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~ 40 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGP 40 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSC
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCC
Confidence 369999999999999999999 99999999877
No 352
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=94.97 E-value=0.029 Score=44.67 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=30.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+.+|+|+|+|..|..+|..|.+.|.+++++|+..
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4569999999999999999999999999999854
No 353
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=94.96 E-value=0.022 Score=45.18 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=29.8
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+|+|||+|..|..+|..|.+.|.+++++|+++
T Consensus 6 ~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 6 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 69999999999999999999999999999854
No 354
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=94.85 E-value=0.19 Score=49.48 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=31.3
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEK--GVPSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~ 67 (443)
...++|+|||+|-+|+.++..|++. +.+++++-+.+
T Consensus 244 ~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~ 281 (501)
T 4b63_A 244 SKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS 281 (501)
T ss_dssp TSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred cCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 4567899999999999999999986 67899998875
No 355
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=94.82 E-value=0.0094 Score=58.91 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=30.7
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
|+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~ 34 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD 34 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence 689999999999999999999999999998876
No 356
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.53 E-value=0.038 Score=46.33 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=31.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHc-CCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEK-GVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~-g~~v~iie~~~ 67 (443)
..+|+|||+|..|..+|..|.+. |++|+++|+++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 34799999999999999999999 99999999864
No 357
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=94.33 E-value=0.038 Score=50.73 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||+|..|...|..++.+|++|+++|..+
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 359999999999999999999999999999865
No 358
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=94.11 E-value=0.028 Score=54.70 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=31.9
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEec
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRD 234 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~ 234 (443)
..+++|+|||+|.+|...+..|.+.|++|+++...
T Consensus 10 l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~ 44 (457)
T 1pjq_A 10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (457)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence 45789999999999999999999999999999754
No 359
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=93.96 E-value=0.05 Score=47.08 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=30.2
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+|+|||+|..|..+|..|.+.|++++++|+++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 59999999999999999999999999999865
No 360
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=93.96 E-value=0.063 Score=46.51 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=32.4
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.....|+|||||..|...|..|.+.|.+|+|+++..
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~ 64 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV 64 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 456689999999999999999999999999998753
No 361
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=93.89 E-value=0.08 Score=51.47 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=32.9
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+++|.|||.|.+|+-+|..|.+.|.+|+...+++
T Consensus 7 ~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 7 FENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 467899999999999999999999999999998765
No 362
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=93.74 E-value=0.028 Score=53.18 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=31.0
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
.|+|||+|++|+-+|..|++.|.+|+++.|++.
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~ 38 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE 38 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 599999999999999999999999999999773
No 363
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=93.67 E-value=0.028 Score=54.32 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=31.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.++|+|||||++|+-+|..|++.|.+|+++.+++
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4689999999999999999999999999999887
No 364
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=93.54 E-value=0.051 Score=49.57 Aligned_cols=35 Identities=17% Similarity=0.013 Sum_probs=32.2
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANC 68 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~ 68 (443)
..+|.|||.|..|..+|..|++.|++|+++|+.+.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 45899999999999999999999999999998763
No 365
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=93.44 E-value=0.056 Score=49.45 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=31.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+.+|.|||+|..|..+|..|++.|++|+++|+++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4579999999999999999999999999999864
No 366
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=93.42 E-value=0.047 Score=48.90 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=32.7
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+++|+|||+|.+|...+..|.+.|++|+++....
T Consensus 11 l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred cCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 467899999999999999999999999999997654
No 367
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=93.30 E-value=0.045 Score=51.60 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=31.5
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
++|+|||||..|+++|..+++.|.+|+++.+++.
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~ 35 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK 35 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 4699999999999999999999999999998773
No 368
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=92.96 E-value=0.068 Score=49.10 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=33.1
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+...+.+|.|||.|..|..+|..|.+.|++|+++|+.+
T Consensus 17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 54 (310)
T 3doj_A 17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL 54 (310)
T ss_dssp -CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred ccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 33445689999999999999999999999999999875
No 369
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=92.94 E-value=0.066 Score=43.49 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=32.8
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 200 FRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 200 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+++|+|+|+|..|..++..|...|.+|+++.|++
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 356899999999999999999999999999998876
No 370
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=92.93 E-value=0.076 Score=49.01 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=30.6
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||+|..|...|..|.+.|.+|+++++.+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 479999999999999999999999999999864
No 371
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=92.92 E-value=0.06 Score=49.73 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=32.5
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.....+|.|||.|..|..+|..|.+.|++|+++|+.+
T Consensus 28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 3455689999999999999999999999999999864
No 372
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=92.87 E-value=0.062 Score=49.87 Aligned_cols=33 Identities=9% Similarity=0.162 Sum_probs=30.3
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGV-PSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~ 67 (443)
.+|.|||+|..|.++|..|++.|+ +++++|.+.
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence 479999999999999999999998 999999865
No 373
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=92.85 E-value=0.083 Score=48.57 Aligned_cols=33 Identities=36% Similarity=0.379 Sum_probs=30.2
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||+|..|.+.|..|.+.|.+|++++++.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 479999999999999999999999999999864
No 374
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=92.85 E-value=0.085 Score=47.73 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=31.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+.+|.|||+|..|...|..|++.|++|+++|+.+
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3569999999999999999999999999999865
No 375
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=92.82 E-value=0.059 Score=51.26 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=31.2
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~ 37 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT 37 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 379999999999999999999999999999987
No 376
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=92.81 E-value=0.062 Score=50.88 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=33.4
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.....+|+|||+|.+|+.+|..+...|.+|+++|+.+
T Consensus 187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 223 (405)
T 4dio_A 187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP 223 (405)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3456789999999999999999999999999999875
No 377
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=92.78 E-value=0.083 Score=49.11 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=31.5
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
++.+..+|.|||+|..|..+|..|++.|++|+++++..
T Consensus 10 ~~~~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~ 47 (335)
T 1z82_A 10 HHHMEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK 47 (335)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred ccccCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 44566789999999999999999999999999998853
No 378
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=92.70 E-value=0.099 Score=48.14 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=31.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+.+|.|||+|..|.+.|..|++.|++|+++|+++
T Consensus 6 ~~kI~vIGaG~MG~~iA~~la~~G~~V~l~d~~~ 39 (319)
T 2dpo_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CceEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4569999999999999999999999999999865
No 379
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=92.64 E-value=0.061 Score=48.15 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=31.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
....|+|||||..|...|..|.+.|.+|+|+++..
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 34569999999999999999999999999999864
No 380
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=92.63 E-value=0.12 Score=47.13 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=30.8
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||+|..|...|..|.+.|.+|+++++..
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 479999999999999999999999999999874
No 381
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=92.60 E-value=0.052 Score=52.16 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
++|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~ 33 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA 33 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 379999999999999999999999999999875
No 382
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=92.55 E-value=0.056 Score=50.62 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=31.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999999999999885
No 383
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=92.42 E-value=0.095 Score=48.31 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=29.7
Q ss_pred CCCCCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 198 ELFRDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 198 ~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+...+|+|||+|..|.-+|..|++.|.+|+++ +++
T Consensus 15 ~~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~ 51 (318)
T 3hwr_A 15 LYFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP 51 (318)
T ss_dssp -----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred hhccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence 3445679999999999999999999999999998 654
No 384
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=92.37 E-value=0.11 Score=48.83 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=31.9
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANC 68 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~ 68 (443)
|.+|+|||||..|..+++.+.+.|++++++|.++.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46799999999999999999999999999998664
No 385
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=92.33 E-value=0.17 Score=43.67 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=30.5
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
..+|.|||+|..|...|..|.+.|++++++++..
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999998864
No 386
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=92.30 E-value=0.056 Score=51.92 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=30.5
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~ 33 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLP 33 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence 79999999999999999999999999999876
No 387
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=92.27 E-value=0.12 Score=44.48 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=31.0
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERANC 68 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~ 68 (443)
.+|.|||+|..|.++|..|.+.|.+|+++++.+.
T Consensus 20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 3699999999999999999999999999998753
No 388
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=92.25 E-value=0.1 Score=42.19 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=31.4
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.++++|+|+|..|..++..|.+.|.+|+++.+++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4689999999999999999999999999998864
No 389
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=92.20 E-value=0.051 Score=51.12 Aligned_cols=32 Identities=9% Similarity=0.220 Sum_probs=30.5
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 4 dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~ 35 (372)
T 2uzz_A 4 DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM 35 (372)
T ss_dssp EEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 69999999999999999999999999999876
No 390
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=92.16 E-value=0.067 Score=50.60 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~ 36 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 379999999999999999999999999999876
No 391
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=92.11 E-value=0.06 Score=53.00 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=32.1
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..++|+|||+|.+|+.+|..|++.|.+|+++.+++
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~ 66 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 66 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence 35789999999999999999999999999998875
No 392
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=92.06 E-value=0.11 Score=50.16 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=32.1
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERANCI 69 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~~ 69 (443)
..+|+|||.|.+|+++|..|.++|++|+++|.....
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~ 40 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP 40 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence 357999999999999999999999999999987643
No 393
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=92.02 E-value=0.084 Score=50.50 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=31.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCc-cEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNAR-PSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~-Vt~i~r~~~ 236 (443)
.+|+|||||.+|+-+|..|++.|.+ |+++.|++.
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 39 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 39 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 4799999999999999999999999 999999873
No 394
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=91.99 E-value=0.17 Score=46.81 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=30.5
Q ss_pred CCeEEEEccCCCHHH-HHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGME-VSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e-~a~~l~~~g~~Vt~i~r~~ 235 (443)
.++|.|||.|.+|+. +|..|.+.|.+|++..+++
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 578999999999997 8889999999999988765
No 395
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=91.98 E-value=0.12 Score=47.58 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=30.1
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCC--CEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGV--PSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~--~v~iie~~~ 67 (443)
.+|+|||+|..|..+|..|++.|. +++++|+..
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 479999999999999999999998 999998863
No 396
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=91.97 E-value=0.074 Score=49.91 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=32.7
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
....+|+|||+|..|+.+|..+...|.+|+++|+..
T Consensus 182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 355689999999999999999999999999999875
No 397
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=91.96 E-value=0.12 Score=49.85 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=32.9
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERANC 68 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~~ 68 (443)
+..-.++.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 5 ~~~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~ 42 (446)
T 4a7p_A 5 HHGSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR 42 (446)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred cCCceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 34456799999999999999999999999999999764
No 398
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=91.96 E-value=0.094 Score=50.70 Aligned_cols=37 Identities=27% Similarity=0.489 Sum_probs=33.3
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+..+.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 51 ~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 87 (460)
T 3k6j_A 51 AYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE 87 (460)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence 3455689999999999999999999999999999875
No 399
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=91.96 E-value=0.065 Score=50.74 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=31.3
Q ss_pred CeEEEEccCCCHHHHHHHHhhc--CCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNY--NARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~--g~~Vt~i~r~~~ 236 (443)
.+|+|||||.+|+-+|..|++. |.+|+++.+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~ 36 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE 36 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 3699999999999999999999 999999998873
No 400
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=91.94 E-value=0.067 Score=51.50 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=30.2
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~ 34 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE 34 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 69999999999999999999999999999865
No 401
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=91.87 E-value=0.12 Score=47.35 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=30.4
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||+|..|..+|..|.+.|++|+++++.+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 369999999999999999999999999999854
No 402
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=91.84 E-value=0.069 Score=50.44 Aligned_cols=33 Identities=15% Similarity=0.406 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999875
No 403
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=91.81 E-value=0.13 Score=46.61 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=30.9
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||.|..|..+|..|.+.|++|+++|+.+
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999999875
No 404
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=91.75 E-value=0.09 Score=49.30 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 589999999999999999999999999999865
No 405
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=91.74 E-value=0.13 Score=46.50 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=30.1
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+|.|||+|..|..+|..|.+.|++|+++++..
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 33 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 58999999999999999999999999999875
No 406
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=91.69 E-value=0.13 Score=50.26 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=31.7
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
..-.+|.|||+|..|+.+|..|++.|++|+++|++.
T Consensus 6 ~~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 6 HGSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 344579999999999999999999999999999864
No 407
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=91.67 E-value=0.085 Score=50.65 Aligned_cols=34 Identities=18% Similarity=0.409 Sum_probs=31.5
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcC-CccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYN-ARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g-~~Vt~i~r~~ 235 (443)
..+|+|||+|.+|+-+|..|++.| .+|+++.+++
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~ 40 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD 40 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 468999999999999999999999 8999998876
No 408
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=91.64 E-value=0.13 Score=46.58 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=30.6
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+.-...|.|||+|..|...|..|+ .|++|+++|+.+
T Consensus 9 ~~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~ 44 (293)
T 1zej_A 9 HHHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE 44 (293)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred ccCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence 344567999999999999999999 999999999865
No 409
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=91.62 E-value=0.19 Score=46.62 Aligned_cols=32 Identities=34% Similarity=0.336 Sum_probs=30.0
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERA 66 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~ 66 (443)
.+|.|||+|..|..+|..|++.|.+|+++++.
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 47999999999999999999999999999974
No 410
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=91.62 E-value=0.13 Score=49.81 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=30.4
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+|.|||+|..|+.+|..|++.|++|+++|+++
T Consensus 4 kI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 4 DIAVVGIGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 69999999999999999999999999999865
No 411
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=91.61 E-value=0.15 Score=47.85 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=32.5
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGV-PSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~ 67 (443)
....+|+|+|+|.+|+.+|..|...|. +++++|+.-
T Consensus 186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G 222 (398)
T 2a9f_A 186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG 222 (398)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 455689999999999999999999998 999999874
No 412
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=91.60 E-value=0.089 Score=51.89 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=30.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhc-CCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNY-NARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~-g~~Vt~i~r~~ 235 (443)
-.|+|||||.+|+-+|..|++. |.+|+++.+++
T Consensus 11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~ 44 (513)
T 4gde_A 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE 44 (513)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSS
T ss_pred CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 3699999999999999999985 89999998877
No 413
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=91.57 E-value=0.2 Score=49.20 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcC-CccccceeEEEEEEeCCCCeEEEEEeecCCCcEEEEEeCEEEEccCCC
Q 013435 108 QQFLTYLETYTNHFG-LDPVFNTTVVNAEYDHLSRLWRVKTQQGLKQEETVYLCQWLIVATGEN 170 (443)
Q Consensus 108 ~~~~~~l~~~~~~~~-~~v~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~i~a~~vIiAtG~~ 170 (443)
..+.+.+.+.+.+.+ ++++++++|++|+..+ +.+.|++.++ ..++||+||+|+|..
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~--~~v~v~~~~g-----~~~~ad~vI~a~~~~ 311 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNER--DAARVTARDG-----REFVAKRVVCTIPLN 311 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCEEEEEECS--SSEEEEETTC-----CEEEEEEEEECCCGG
T ss_pred HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcC--CEEEEEECCC-----CEEEcCEEEECCCHH
Confidence 445555555565556 7789999999999876 5677877654 579999999999963
No 414
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=91.56 E-value=0.13 Score=49.51 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=33.1
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
...+..|.|||.|+.|+.+|..|++.|++|+.+|-+.
T Consensus 18 ~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 18 GSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp TCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 3456789999999999999999999999999999865
No 415
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=91.46 E-value=0.15 Score=46.58 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=32.0
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+..+|.|||.|..|..+|..|.+.|++|+++|+.+
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45579999999999999999999999999999865
No 416
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=91.43 E-value=0.13 Score=50.04 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
..+|.|||.|.+|+++|..|.++|++|++.|...
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 4579999999999999999999999999999864
No 417
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=91.33 E-value=0.14 Score=46.00 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=31.4
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
++.+|+|+|+|..|..++..|.+.|++|+++.+..
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 34579999999999999999999999999999865
No 418
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=91.29 E-value=0.11 Score=50.25 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=31.3
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCC-ccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNA-RPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~-~Vt~i~r~~ 235 (443)
.+|+|||+|..|+-+|..|++.|. +|+++.+.+
T Consensus 7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~ 40 (438)
T 3dje_A 7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40 (438)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 479999999999999999999999 999999987
No 419
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=91.29 E-value=0.2 Score=46.93 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=31.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
..+|.|||+|..|.++|..|++.|++|+++++.+
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~ 62 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES 62 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3579999999999999999999999999999864
No 420
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=91.29 E-value=0.095 Score=49.45 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=31.9
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEec
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRD 234 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~ 234 (443)
...+|+|||+|.+|+-+|..|.+.|.+|+++.++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~ 76 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN 76 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence 4578999999999999999999999999999988
No 421
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=91.22 E-value=0.086 Score=51.47 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCC--ccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNA--RPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~--~Vt~i~r~~ 235 (443)
++|+|||||.+|+-+|..|++.|. +|+++.+++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~ 37 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence 589999999999999999999998 999998865
No 422
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=91.18 E-value=0.19 Score=44.35 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=31.5
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.....+|.|||+|..|.++|..|.+.|++|+++++.+
T Consensus 16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 3445679999999999999999999999999999865
No 423
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=91.13 E-value=0.12 Score=49.58 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=31.0
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.-..+.-|||.|..|+.+|..|++.|++|+++|+++
T Consensus 9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~ 44 (431)
T 3ojo_A 9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ 44 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 334468999999999999999999999999999976
No 424
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=91.12 E-value=0.18 Score=46.43 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|..|.-+|..|++.|.+|+++.|++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 479999999999999999999999999998765
No 425
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=91.10 E-value=0.13 Score=44.49 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=30.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEE-EecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLI-LERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~i-ie~~~ 67 (443)
+.+|.|||+|..|.++|..|.+.|+++++ ++++.
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~ 57 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP 57 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 45899999999999999999999999998 77654
No 426
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=91.09 E-value=0.11 Score=41.63 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=31.4
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
....+|+|||+|..|..+|..|.+.|.+++++++..
T Consensus 19 ~~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 19 NGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp HCCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 346789999999999999999999998888998764
No 427
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=91.07 E-value=0.23 Score=48.68 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=32.6
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
++.+-.+|.|||.|..|..+|..|+++|++|+++++.+
T Consensus 6 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~ 43 (497)
T 2p4q_A 6 HHHMSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ 43 (497)
T ss_dssp ---CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred cccCCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34566689999999999999999999999999999865
No 428
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=91.07 E-value=0.16 Score=40.39 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=31.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.++|+|+|.|..|..+|..|.+.|.+|+++.+++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 4689999999999999999999999999998876
No 429
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=91.06 E-value=0.17 Score=49.27 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=33.3
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHc-CC-CEEEEecCCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEK-GV-PSLILERANC 68 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~-g~-~v~iie~~~~ 68 (443)
..+.+|.|||+|..|+.+|..|++. |+ +|+++|+++.
T Consensus 16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 3455799999999999999999999 99 9999999764
No 430
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=91.04 E-value=0.18 Score=47.14 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=32.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGV-PSLILERA 66 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~ 66 (443)
....+|+|+|+|.+|..+|..|...|. +++++|+.
T Consensus 190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 456789999999999999999999998 79999987
No 431
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=91.02 E-value=0.093 Score=49.37 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=30.4
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.++|+|||+|.+|+-+|..|+ .|.+|+++.+.+
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~ 41 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA 41 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence 478999999999999999999 599999999875
No 432
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=90.95 E-value=0.25 Score=47.20 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=30.5
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.|+|||.|..|..+|..|.+.|.+++++|+++
T Consensus 6 ~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~ 37 (413)
T 3l9w_A 6 RVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP 37 (413)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred eEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 59999999999999999999999999999876
No 433
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=90.94 E-value=0.17 Score=44.80 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=32.7
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGV-PSLILERAN 67 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~ 67 (443)
.....+|+|||+|-.|..+|..|++.|. +++|+|+..
T Consensus 28 ~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 28 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 3455679999999999999999999998 899999865
No 434
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=90.90 E-value=0.11 Score=50.94 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=31.4
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~ 44 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEART 44 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 5689999999999999999999999999998765
No 435
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=90.75 E-value=0.18 Score=46.41 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGV-PSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~ 67 (443)
.+|.|||+|..|..+|..|++.|+ +++++|...
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence 469999999999999999999998 999999864
No 436
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=90.71 E-value=0.1 Score=50.71 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=31.2
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~ 44 (453)
T 2bcg_G 12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQD 44 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999887
No 437
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=90.68 E-value=0.21 Score=47.18 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=31.6
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcC-------CCEEEEecCCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKG-------VPSLILERANC 68 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g-------~~v~iie~~~~ 68 (443)
+.+|.|||+|..|.++|..|++.| .+|+++++...
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~ 62 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF 62 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence 457999999999999999999999 99999998654
No 438
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=90.56 E-value=0.29 Score=43.96 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=31.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
++|+|.|+|.+|-.++..|.+.|.+|+.+.|++
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 689999999999999999999999999999876
No 439
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=90.54 E-value=0.14 Score=48.59 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~ 36 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 36 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 479999999999999999999999999999876
No 440
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=90.47 E-value=0.12 Score=48.30 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=30.0
Q ss_pred eEEEEccCCCHHHHHHHHhhcC------CccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYN------ARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g------~~Vt~i~r~~ 235 (443)
+|+|||+|.+|+-+|..|++.| .+|+++.+..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 6999999999999999999998 8999999876
No 441
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=90.45 E-value=0.21 Score=45.56 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=30.7
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||.|..|..+|..|++.|++|+++|+.+
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 469999999999999999999999999999865
No 442
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=90.44 E-value=0.16 Score=49.37 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+.+|.|||+|..|...|..|++.|++|+++|+.+
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~ 70 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 70 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 35579999999999999999999999999999864
No 443
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=90.43 E-value=0.11 Score=51.49 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 37 (520)
T 1s3e_A 5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 37 (520)
T ss_dssp CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 579999999999999999999999999998876
No 444
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=90.42 E-value=0.11 Score=51.30 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=31.4
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcC-CccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYN-ARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g-~~Vt~i~r~~ 235 (443)
..+|+|||+|.+|+-+|..|.+.| .+|+++.+++
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ 42 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD 42 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 358999999999999999999999 9999998876
No 445
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=90.36 E-value=0.11 Score=39.57 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=30.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcC-CccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYN-ARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g-~~Vt~i~r~~ 235 (443)
.++|+|+|+|.+|..++..|...| .+|+++.|++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 468999999999999999999999 8899988865
No 446
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=90.35 E-value=0.22 Score=46.69 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=31.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
..+|.|||.|..|..+|..|.+.|++|+++|+.+
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4579999999999999999999999999999865
No 447
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=90.31 E-value=0.24 Score=45.79 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=30.4
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGV-PSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~ 67 (443)
.+|.|||+|..|..+|..|+..|+ +++++|.+.
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 479999999999999999999998 999999865
No 448
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=90.27 E-value=0.14 Score=40.62 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=31.3
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.++++|+|+|..|..++..|.+.|.+|+++.+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4689999999999999999999999999998866
No 449
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=90.25 E-value=0.12 Score=49.29 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhhc--CCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNY--NARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~--g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++. |.+|+++.+..
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~ 71 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 4799999999999999999999 99999998865
No 450
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=90.24 E-value=0.12 Score=51.00 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~ 36 (501)
T 2qcu_A 4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD 36 (501)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 369999999999999999999999999999875
No 451
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=90.21 E-value=0.2 Score=48.06 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=30.9
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+...+.+|.|||+|..|+.+|..|++ |++|+++|+.+
T Consensus 32 r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~ 68 (432)
T 3pid_A 32 RGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ 68 (432)
T ss_dssp ---CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred cccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence 34555689999999999999999998 99999999865
No 452
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=90.17 E-value=0.2 Score=46.15 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=31.9
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcC-CCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKG-VPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g-~~v~iie~~~ 67 (443)
++.+|.|||.|..|..+|..|++.| ++|+++|+..
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4457999999999999999999999 9999999875
No 453
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=90.15 E-value=0.17 Score=52.03 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+|+|||||.+|+-+|..|++.|.+|+++.+++
T Consensus 272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~ 305 (676)
T 3ps9_A 272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADE 305 (676)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3689999999999999999999999999999865
No 454
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=90.13 E-value=0.21 Score=45.13 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=30.2
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+|.|||.|..|..+|..|.+.|++|+++|+.+
T Consensus 3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pef_A 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP 34 (287)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 59999999999999999999999999999875
No 455
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=90.13 E-value=0.16 Score=50.79 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=31.2
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-.|+|||||.+|+-+|..|++.|.+|.++.+++
T Consensus 19 ~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d 51 (561)
T 3da1_A 19 LDLLVIGGGITGAGIALDAQVRGIQTGLVEMND 51 (561)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 479999999999999999999999999999985
No 456
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=90.08 E-value=0.39 Score=43.13 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=30.8
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|+|.|+|..|..++..|.+.|++|+++++..
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999865
No 457
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=90.08 E-value=0.075 Score=51.72 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhhcC------CccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYN------ARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g------~~Vt~i~r~~ 235 (443)
++|+|||||.+|+-+|..|++.| .+|+++.+++
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~ 44 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCC
Confidence 58999999999999999999999 8999999875
No 458
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=90.05 E-value=0.32 Score=47.49 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=31.4
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
..+|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 38 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA 38 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4579999999999999999999999999999865
No 459
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=90.02 E-value=0.17 Score=50.41 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCeEEEEccCCCHHHHHHHHhh---cCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCN---YNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~---~g~~Vt~i~r~~ 235 (443)
..+|+|||||.+|+-+|..|++ .|.+|+++.+.+
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 3589999999999999999999 899999999965
No 460
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=90.00 E-value=0.19 Score=45.79 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=31.0
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+.+|.|||+|..|..+|..|.+.|++|+++|+.+
T Consensus 3 m~~I~iiG~G~mG~~~a~~l~~~G~~V~~~d~~~ 36 (302)
T 2h78_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 36 (302)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 3579999999999999999999999999998864
No 461
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=89.99 E-value=0.16 Score=40.03 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=30.2
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|+|+|..|..++..|.+.|.+|+++.|++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999998765
No 462
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=89.98 E-value=0.16 Score=52.21 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=31.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~ 297 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADA 297 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4689999999999999999999999999999865
No 463
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=89.98 E-value=0.13 Score=50.20 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=31.3
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
...+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~ 49 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 49 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 34689999999999999999999999999998876
No 464
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=89.97 E-value=0.34 Score=44.07 Aligned_cols=34 Identities=38% Similarity=0.473 Sum_probs=31.2
Q ss_pred CCCeEEEC-CCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVG-AGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG-~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+.+|.||| +|..|.++|..|.+.|++|+++++..
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 45799999 99999999999999999999999865
No 465
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=89.94 E-value=0.22 Score=39.35 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=31.0
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..++|+|+|+|..|..++..|...|.+|+++.+++
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999998765
No 466
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=89.90 E-value=0.26 Score=45.09 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=29.6
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGV-PSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~ 67 (443)
.+|.|||+|..|..+|..|+..|+ +++++|.+.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 469999999999999999999986 899998764
No 467
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=89.90 E-value=0.34 Score=42.69 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCC----CEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGV----PSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~----~v~iie~~~ 67 (443)
.+|.|||+|..|...|..|.+.|+ +++++|+.+
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~ 39 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT 39 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence 479999999999999999999998 999998864
No 468
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=89.87 E-value=0.12 Score=50.30 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=30.3
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+|+|+|+|-.|..+|..|.+.|++|+++|+++
T Consensus 5 ~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 5 KIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp EEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 49999999999999999999999999999875
No 469
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=89.83 E-value=0.19 Score=50.11 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=32.0
Q ss_pred CCCeEEEEccCCCHHHHHHHHhh---cCCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCN---YNARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~---~g~~Vt~i~r~~ 235 (443)
+..+|+|||||..|.-+|..|++ .|.+|+++.+.+
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 35689999999999999999999 899999999876
No 470
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=89.81 E-value=0.13 Score=47.52 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=30.1
Q ss_pred CCeEEEEccCCCHHHHHHHHhh--cCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCN--YNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~--~g~~Vt~i~r~~ 235 (443)
...|+|||+|+.|+-+|..|++ .|.+|+++.+.+
T Consensus 65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~ 100 (326)
T 3fpz_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 100 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 4579999999999999999975 589999998876
No 471
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=89.75 E-value=0.21 Score=47.51 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=31.6
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
...+|+|||+|.+|+.++..+...|.+|+++|+..
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35679999999999999999999999999999865
No 472
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=89.73 E-value=0.15 Score=49.34 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=30.7
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~ 38 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARD 38 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence 479999999999999999999999999998875
No 473
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=89.70 E-value=0.26 Score=45.47 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=30.2
Q ss_pred CCCeEEECCCHHHHH-HHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLA-TAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~-~A~~l~~~g~~v~iie~~~ 67 (443)
+.+|.|||.|.+|++ +|..|.++|++|++.|...
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 356999999999997 7888899999999999875
No 474
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=89.69 E-value=0.15 Score=50.83 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=31.7
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
.+|+|||+|.+|+-+|..|++.|.+|+++.|.+.
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~ 60 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDG 60 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4799999999999999999999999999999873
No 475
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=89.69 E-value=0.25 Score=45.21 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=29.3
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||+|..|...|..|. .|.+|+++++..
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 47999999999999999999 999999998864
No 476
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=89.65 E-value=0.16 Score=48.28 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=31.2
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
..+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~ 62 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP 62 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCceEEEeccC
Confidence 3589999999999999999999999999998875
No 477
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=89.60 E-value=0.17 Score=46.05 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=28.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
-.+|-+||-|..|..+|.+|.+.|++|+++|+.+
T Consensus 5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~ 38 (297)
T 4gbj_A 5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA 38 (297)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3469999999999999999999999999999866
No 478
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=89.59 E-value=0.14 Score=51.34 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=31.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
-+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus 33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~ 65 (571)
T 2rgh_A 33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD 65 (571)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999998876
No 479
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=89.54 E-value=0.15 Score=49.41 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=30.0
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcC-CccEEEEe
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYN-ARPSLVVR 233 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g-~~Vt~i~r 233 (443)
..+|+|||+|.+|+-+|..|++.| .+|+++.+
T Consensus 23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 347999999999999999999999 99999998
No 480
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=89.45 E-value=0.17 Score=49.79 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=32.0
Q ss_pred CCeEEEEccCCCHHHHHHHHhhcCCccEEEEecCC
Q 013435 202 DKNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDTV 236 (443)
Q Consensus 202 ~~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~~ 236 (443)
..+|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~ 47 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK 47 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence 46899999999999999999999999999988763
No 481
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=89.36 E-value=0.28 Score=44.75 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=30.2
Q ss_pred hcCCCeEEECCCHHHHHHHHHHHHcCC--CEEEEecCC
Q 013435 32 IMVPGPVIVGAGPSGLATAACLTEKGV--PSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~G~aGl~~A~~l~~~g~--~v~iie~~~ 67 (443)
..+.+|.|||+|..|..+|..|+..|+ +++++|...
T Consensus 12 ~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 12 KTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 345679999999999999999999998 899999865
No 482
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=89.31 E-value=0.31 Score=44.84 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=30.0
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGV-PSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~ 67 (443)
.+|.|||+|..|..+|..|+..|+ +++++|.+.
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 479999999999999999999998 899999764
No 483
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=89.28 E-value=0.29 Score=45.74 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=30.1
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||+|..|..+|..|.+.|++|+++++.+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 37 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 37 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 369999999999999999999999999998753
No 484
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=89.27 E-value=0.27 Score=44.85 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=29.3
Q ss_pred CeEEECCCHHHHHHHHHHHHcCC--CEEEEecCC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGV--PSLILERAN 67 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~--~v~iie~~~ 67 (443)
+|.|||+|..|.++|..|+..|+ +++++|.+.
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 58999999999999999999998 899999864
No 485
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=89.22 E-value=0.33 Score=44.47 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=30.6
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||+|..|...|..|.+.|++|+++++..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~ 63 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA 63 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 579999999999999999999999999998864
No 486
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=89.21 E-value=0.17 Score=49.57 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=30.1
Q ss_pred CCeEEECCCHHHHHHHHHHHHc--CCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEK--GVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~--g~~v~iie~~~ 67 (443)
.+|.|||+|..|+.+|..|++. |++|+++|+..
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 4799999999999999999999 68999999854
No 487
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=89.20 E-value=0.31 Score=46.14 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=31.7
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
...+|+|||+|.+|+.++..+...|.+|+++|+.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 205 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46689999999999999999999999999999865
No 488
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=89.06 E-value=0.3 Score=44.08 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=33.8
Q ss_pred hhhcCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCC
Q 013435 30 RRIMVPGPVIVGAGPSGLATAACLTEKGV-PSLILERAN 67 (443)
Q Consensus 30 ~~~~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~ 67 (443)
.+....+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 45677789999999999999999999997 899999764
No 489
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=89.05 E-value=0.2 Score=47.18 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=29.8
Q ss_pred eEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 204 NVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 204 ~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~ 34 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 68999999999999999999999999998765
No 490
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=88.97 E-value=0.32 Score=44.86 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=33.2
Q ss_pred hhcCCCeEEECCCHHHHHHHHHHHHcCC-CEEEEecCC
Q 013435 31 RIMVPGPVIVGAGPSGLATAACLTEKGV-PSLILERAN 67 (443)
Q Consensus 31 ~~~~~dvvIIG~G~aGl~~A~~l~~~g~-~v~iie~~~ 67 (443)
.....+|+|||+|-.|..+|..|+..|. +++|+|...
T Consensus 31 kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 31 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred HHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 5667789999999999999999999998 888998865
No 491
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=88.96 E-value=0.35 Score=42.08 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=31.4
Q ss_pred hcCCCeEEECC-CHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 32 IMVPGPVIVGA-GPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 32 ~~~~dvvIIG~-G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.....|+|.|| |..|..++..|++.|++|+++++..
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 45567999998 9999999999999999999999864
No 492
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=88.96 E-value=0.31 Score=44.80 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=28.1
Q ss_pred CeEEECCCHHHHHHHHHHHHcCCCEEEEecC
Q 013435 36 GPVIVGAGPSGLATAACLTEKGVPSLILERA 66 (443)
Q Consensus 36 dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~ 66 (443)
+|.|||+|..|..+|..|++.|.+|+++ +.
T Consensus 21 kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 21 KVAIMGAGAVGCYYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred cEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence 5999999999999999999999999999 54
No 493
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=88.94 E-value=0.22 Score=45.54 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=29.1
Q ss_pred CeEEEEccCCCHHHHHHHHhhcCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCNYNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~~g~~Vt~i~r~~ 235 (443)
.+|+|||+|..|.-+|..|+ .|.+|+++.|++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 47999999999999999999 899999998765
No 494
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=88.88 E-value=0.35 Score=43.10 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=31.3
Q ss_pred CCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 34 VPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 34 ~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
..+++|||+|-+|.++|..|.+.|.+++|+.|..
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~ 151 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS 151 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5689999999999999999999999999998864
No 495
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=88.82 E-value=0.16 Score=50.08 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=29.6
Q ss_pred CeEEEEccCCCHHHHHHHHhh---cCCccEEEEecC
Q 013435 203 KNVLVVGCGNSGMEVSLDLCN---YNARPSLVVRDT 235 (443)
Q Consensus 203 ~~v~ViG~G~~~~e~a~~l~~---~g~~Vt~i~r~~ 235 (443)
.+|+|||||.+|+-+|..|++ .|.+|+++.+.+
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~ 38 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN 38 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 479999999999999999999 999999999876
No 496
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=88.76 E-value=0.32 Score=44.55 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=29.5
Q ss_pred CCeEEECCCHHHHHHHHHHHHcC--CCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKG--VPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g--~~v~iie~~~ 67 (443)
.+|.|||+|..|..+|..|++.| .+++++|+..
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~ 36 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence 36999999999999999999999 6899998864
No 497
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=88.74 E-value=0.32 Score=41.56 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.4
Q ss_pred CeEEEC-CCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 36 GPVIVG-AGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 36 dvvIIG-~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
+|.||| +|..|..+|..|.+.|++++++++..
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 489999 99999999999999999999999864
No 498
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=88.74 E-value=0.33 Score=43.76 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=29.2
Q ss_pred CCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 35 PGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 35 ~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
.+|.|||+|..|...|..|.+ |++|+++++..
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~ 33 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF 33 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 369999999999999999999 99999998864
No 499
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=88.74 E-value=0.32 Score=45.58 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=31.3
Q ss_pred cCCCeEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Q 013435 33 MVPGPVIVGAGPSGLATAACLTEKGVPSLILERAN 67 (443)
Q Consensus 33 ~~~dvvIIG~G~aGl~~A~~l~~~g~~v~iie~~~ 67 (443)
...+|+|+|+|.+|..++..|...|.+|+++|+.+
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 34679999999999999999999999999998864
No 500
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.71 E-value=0.24 Score=41.29 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=31.9
Q ss_pred CCCeEEEEccCCCHHHHHHHHhhc-CCccEEEEecC
Q 013435 201 RDKNVLVVGCGNSGMEVSLDLCNY-NARPSLVVRDT 235 (443)
Q Consensus 201 ~~~~v~ViG~G~~~~e~a~~l~~~-g~~Vt~i~r~~ 235 (443)
.+++|+|+|.|..|..+|..|.+. |.+|+++.+++
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 466899999999999999999999 99999998876
Done!