Query 013436
Match_columns 443
No_of_seqs 677 out of 3917
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 03:50:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.8E-45 6E-50 309.1 24.2 263 114-436 105-447 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 4.2E-44 9E-49 305.8 18.4 255 108-426 201-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 2.8E-42 6E-47 291.0 22.1 278 102-426 135-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2E-42 4.3E-47 295.5 21.0 254 121-437 172-427 (459)
5 KOG0286 G-protein beta subunit 100.0 1.8E-41 3.8E-46 276.7 25.6 263 118-436 49-311 (343)
6 KOG0263 Transcription initiati 100.0 2.1E-40 4.6E-45 304.4 20.5 260 109-429 363-650 (707)
7 KOG0286 G-protein beta subunit 100.0 1.4E-38 3.1E-43 259.8 27.5 264 101-426 74-343 (343)
8 KOG0315 G-protein beta subunit 100.0 1.3E-38 2.7E-43 254.3 23.7 277 106-441 22-301 (311)
9 KOG0279 G protein beta subunit 100.0 5.6E-37 1.2E-41 248.9 26.4 259 114-428 53-313 (315)
10 KOG0645 WD40 repeat protein [G 100.0 6.7E-36 1.4E-40 241.7 32.4 215 116-346 6-225 (312)
11 KOG0279 G protein beta subunit 100.0 1.2E-36 2.6E-41 247.0 27.7 260 118-440 9-274 (315)
12 KOG0316 Conserved WD40 repeat- 100.0 2.4E-37 5.2E-42 245.1 22.0 260 112-437 5-266 (307)
13 KOG0273 Beta-transducin family 100.0 3.9E-37 8.5E-42 266.6 23.7 248 124-437 235-491 (524)
14 KOG0265 U5 snRNP-specific prot 100.0 7.1E-37 1.5E-41 250.8 23.3 262 117-436 40-304 (338)
15 KOG0266 WD40 repeat-containing 100.0 2.9E-36 6.2E-41 284.3 30.9 261 119-438 153-419 (456)
16 KOG0285 Pleiotropic regulator 100.0 1.4E-36 3E-41 254.6 23.3 260 115-440 142-401 (460)
17 KOG0295 WD40 repeat-containing 100.0 5E-36 1.1E-40 251.8 25.2 261 114-437 98-373 (406)
18 KOG0284 Polyadenylation factor 100.0 3.9E-37 8.4E-42 262.1 18.4 279 124-427 96-379 (464)
19 KOG0291 WD40-repeat-containing 100.0 4.1E-35 8.8E-40 267.7 28.3 287 108-437 334-621 (893)
20 KOG0263 Transcription initiati 100.0 3.4E-36 7.4E-41 276.8 20.7 209 118-350 445-653 (707)
21 KOG0282 mRNA splicing factor [ 100.0 4.4E-36 9.6E-41 261.1 17.7 270 109-438 199-472 (503)
22 KOG0293 WD40 repeat-containing 100.0 1.3E-34 2.8E-39 247.0 21.1 271 108-437 208-479 (519)
23 KOG0276 Vesicle coat complex C 100.0 7.4E-34 1.6E-38 254.3 23.1 256 118-436 7-265 (794)
24 KOG0295 WD40 repeat-containing 100.0 5.8E-34 1.3E-38 239.5 20.5 261 105-427 131-405 (406)
25 KOG0273 Beta-transducin family 100.0 8.8E-33 1.9E-37 239.7 25.7 250 114-428 266-523 (524)
26 KOG0318 WD40 repeat stress pro 100.0 7.3E-32 1.6E-36 237.1 31.2 277 112-430 178-562 (603)
27 KOG0315 G-protein beta subunit 100.0 2.1E-32 4.6E-37 218.8 24.8 209 116-347 75-289 (311)
28 KOG0291 WD40-repeat-containing 100.0 3.3E-32 7.1E-37 248.8 29.3 304 92-437 103-559 (893)
29 KOG0281 Beta-TrCP (transducin 100.0 4.9E-34 1.1E-38 238.6 15.9 264 105-432 218-481 (499)
30 KOG0283 WD40 repeat-containing 100.0 6.7E-33 1.4E-37 257.3 24.0 250 118-429 260-577 (712)
31 KOG0281 Beta-TrCP (transducin 100.0 2.1E-34 4.5E-39 240.8 12.6 234 123-432 196-432 (499)
32 KOG0266 WD40 repeat-containing 100.0 3.4E-32 7.5E-37 256.7 28.6 250 116-428 195-454 (456)
33 PLN00181 protein SPA1-RELATED; 100.0 1.3E-31 2.9E-36 271.3 34.4 257 119-431 478-741 (793)
34 cd00200 WD40 WD40 domain, foun 100.0 1.8E-31 3.9E-36 239.3 31.4 256 118-437 3-258 (289)
35 KOG0296 Angio-associated migra 100.0 1.4E-31 3E-36 225.4 27.8 281 116-428 56-398 (399)
36 KOG0265 U5 snRNP-specific prot 100.0 1.3E-31 2.8E-36 220.0 25.4 263 102-425 67-335 (338)
37 KOG0292 Vesicle coat complex C 100.0 1.6E-32 3.5E-37 254.8 22.1 260 120-437 5-289 (1202)
38 KOG0319 WD40-repeat-containing 100.0 2E-32 4.4E-37 249.7 22.0 265 113-429 354-620 (775)
39 KOG0282 mRNA splicing factor [ 100.0 1.8E-32 3.8E-37 238.7 20.5 264 102-426 235-503 (503)
40 KOG0293 WD40 repeat-containing 100.0 5.4E-32 1.2E-36 231.1 21.9 292 74-428 208-513 (519)
41 KOG0318 WD40 repeat stress pro 100.0 8.6E-31 1.9E-35 230.4 29.4 307 96-432 31-354 (603)
42 KOG0643 Translation initiation 100.0 1.6E-31 3.4E-36 216.0 22.1 281 117-428 3-317 (327)
43 KOG0277 Peroxisomal targeting 100.0 1.1E-31 2.5E-36 215.3 18.5 246 123-427 59-308 (311)
44 KOG0285 Pleiotropic regulator 100.0 2E-31 4.3E-36 223.8 20.7 293 78-428 139-439 (460)
45 KOG0319 WD40-repeat-containing 100.0 5E-31 1.1E-35 240.7 24.9 264 113-437 312-586 (775)
46 KOG0284 Polyadenylation factor 100.0 1.4E-32 3.1E-37 234.4 13.7 236 108-367 122-358 (464)
47 cd00200 WD40 WD40 domain, foun 100.0 7.3E-30 1.6E-34 228.8 32.0 258 105-426 32-289 (289)
48 PTZ00421 coronin; Provisional 100.0 3.9E-30 8.4E-35 241.7 30.5 262 123-436 19-298 (493)
49 KOG1446 Histone H3 (Lys4) meth 100.0 1.6E-29 3.4E-34 209.7 28.9 258 120-438 10-272 (311)
50 KOG0277 Peroxisomal targeting 100.0 1.7E-30 3.7E-35 208.6 22.3 247 127-431 11-268 (311)
51 KOG0275 Conserved WD40 repeat- 100.0 2.5E-31 5.4E-36 220.6 17.9 254 122-434 211-473 (508)
52 KOG0313 Microtubule binding pr 100.0 1.6E-30 3.4E-35 220.0 22.7 271 113-427 133-417 (423)
53 KOG0640 mRNA cleavage stimulat 100.0 9.1E-31 2E-35 215.9 20.3 286 118-428 106-426 (430)
54 PLN00181 protein SPA1-RELATED; 100.0 2.3E-29 5.1E-34 255.0 33.4 254 123-427 531-792 (793)
55 KOG1407 WD40 repeat protein [F 100.0 2.7E-30 5.9E-35 208.2 20.4 256 118-437 14-270 (313)
56 KOG0276 Vesicle coat complex C 100.0 5.2E-30 1.1E-34 229.8 23.3 228 106-355 37-266 (794)
57 KOG0645 WD40 repeat protein [G 100.0 2.9E-29 6.2E-34 203.4 25.2 216 161-428 6-225 (312)
58 KOG0305 Anaphase promoting com 100.0 3.7E-29 8.1E-34 226.6 28.5 262 104-430 197-463 (484)
59 KOG0274 Cdc4 and related F-box 100.0 2.6E-29 5.7E-34 236.3 27.1 256 108-436 232-490 (537)
60 KOG0288 WD40 repeat protein Ti 100.0 5.1E-31 1.1E-35 225.3 13.0 269 105-437 156-426 (459)
61 KOG0292 Vesicle coat complex C 100.0 2E-29 4.2E-34 234.4 24.2 290 106-431 33-351 (1202)
62 KOG0772 Uncharacterized conser 100.0 6.3E-30 1.4E-34 224.4 19.6 282 110-436 153-453 (641)
63 KOG0313 Microtubule binding pr 100.0 5.7E-29 1.2E-33 210.6 23.4 255 121-436 102-385 (423)
64 PTZ00421 coronin; Provisional 100.0 3.2E-28 6.9E-33 228.8 31.1 213 118-350 69-294 (493)
65 KOG0264 Nucleosome remodeling 100.0 2.6E-29 5.6E-34 217.8 21.6 270 121-428 121-404 (422)
66 KOG0274 Cdc4 and related F-box 100.0 3.9E-29 8.4E-34 235.1 24.4 250 118-438 201-451 (537)
67 PTZ00420 coronin; Provisional 100.0 5.5E-28 1.2E-32 228.1 32.2 236 142-431 50-296 (568)
68 KOG0306 WD40-repeat-containing 100.0 6E-29 1.3E-33 227.5 24.0 267 104-429 394-665 (888)
69 KOG0278 Serine/threonine kinas 100.0 6.8E-30 1.5E-34 204.6 14.8 260 106-432 41-301 (334)
70 KOG0316 Conserved WD40 repeat- 100.0 6.2E-29 1.3E-33 197.5 19.1 212 164-438 12-223 (307)
71 KOG4283 Transcription-coupled 100.0 1.2E-28 2.6E-33 202.1 21.0 289 116-427 35-364 (397)
72 KOG1332 Vesicle coat complex C 100.0 2.7E-29 5.9E-34 200.5 16.1 256 120-428 7-286 (299)
73 KOG0268 Sof1-like rRNA process 100.0 6.1E-30 1.3E-34 215.2 12.8 277 108-434 50-351 (433)
74 PTZ00420 coronin; Provisional 100.0 2.3E-27 4.9E-32 224.0 31.7 214 115-348 65-295 (568)
75 KOG0310 Conserved WD40 repeat- 100.0 9.3E-29 2E-33 215.9 20.5 255 117-436 19-276 (487)
76 KOG0299 U3 snoRNP-associated p 100.0 2.1E-28 4.6E-33 212.2 21.2 263 117-430 135-412 (479)
77 KOG0289 mRNA splicing factor [ 100.0 1E-27 2.2E-32 206.4 23.9 263 105-427 242-505 (506)
78 KOG0300 WD40 repeat-containing 100.0 4.8E-28 1E-32 200.6 18.9 271 116-435 140-434 (481)
79 KOG2096 WD40 repeat protein [G 100.0 6.8E-27 1.5E-31 193.8 25.6 302 117-430 79-404 (420)
80 KOG0647 mRNA export protein (c 100.0 3.1E-27 6.7E-32 194.5 23.3 258 123-437 26-290 (347)
81 KOG0641 WD40 repeat protein [G 100.0 2.5E-26 5.4E-31 181.7 27.5 255 124-436 32-310 (350)
82 KOG0641 WD40 repeat protein [G 100.0 1.6E-26 3.4E-31 182.8 26.3 251 120-428 85-349 (350)
83 KOG0296 Angio-associated migra 100.0 1.2E-26 2.6E-31 195.7 25.0 220 102-346 84-398 (399)
84 KOG0973 Histone transcription 100.0 3.6E-27 7.8E-32 224.9 24.6 280 121-441 10-325 (942)
85 KOG0310 Conserved WD40 repeat- 100.0 4.4E-27 9.4E-32 205.6 22.4 244 120-429 64-310 (487)
86 KOG0294 WD40 repeat-containing 100.0 1.6E-26 3.4E-31 191.4 24.3 247 116-430 35-283 (362)
87 KOG0283 WD40 repeat-containing 100.0 3.9E-27 8.4E-32 219.2 22.9 234 167-439 265-543 (712)
88 KOG0973 Histone transcription 100.0 6.6E-27 1.4E-31 223.1 24.8 255 117-431 62-358 (942)
89 KOG2055 WD40 repeat protein [G 100.0 1.8E-27 3.9E-32 206.4 18.9 317 45-428 188-512 (514)
90 KOG1407 WD40 repeat protein [F 100.0 3.7E-26 8.1E-31 184.4 24.8 208 116-349 56-264 (313)
91 KOG0275 Conserved WD40 repeat- 100.0 9E-28 2E-32 199.5 15.2 273 91-426 219-507 (508)
92 KOG0289 mRNA splicing factor [ 100.0 2.4E-26 5.2E-31 198.0 24.5 241 125-428 220-462 (506)
93 KOG0308 Conserved WD40 repeat- 100.0 1.6E-27 3.4E-32 215.0 17.5 243 129-430 29-287 (735)
94 KOG0288 WD40 repeat protein Ti 100.0 1.8E-27 3.9E-32 203.7 16.5 258 102-425 195-458 (459)
95 KOG0306 WD40-repeat-containing 100.0 5.7E-26 1.2E-30 208.1 25.0 250 118-434 367-628 (888)
96 KOG1036 Mitotic spindle checkp 99.9 1.4E-25 3.1E-30 185.4 24.3 258 124-439 13-273 (323)
97 KOG0308 Conserved WD40 repeat- 99.9 1.2E-26 2.6E-31 209.3 19.0 221 117-349 66-288 (735)
98 KOG0643 Translation initiation 99.9 1.7E-25 3.8E-30 181.2 21.7 239 95-347 22-318 (327)
99 KOG0646 WD40 repeat protein [G 99.9 2E-25 4.4E-30 194.1 23.7 256 137-438 51-317 (476)
100 KOG0278 Serine/threonine kinas 99.9 7E-27 1.5E-31 187.4 13.0 254 115-436 5-262 (334)
101 KOG0264 Nucleosome remodeling 99.9 1.1E-25 2.4E-30 195.4 19.1 219 115-347 168-405 (422)
102 KOG2445 Nuclear pore complex c 99.9 1.4E-24 3E-29 179.4 24.5 283 121-432 10-322 (361)
103 KOG0772 Uncharacterized conser 99.9 1.2E-25 2.7E-30 197.6 19.3 247 124-425 214-484 (641)
104 KOG0640 mRNA cleavage stimulat 99.9 1.1E-25 2.5E-30 185.9 17.4 210 118-346 166-426 (430)
105 KOG0299 U3 snoRNP-associated p 99.9 1.1E-24 2.3E-29 189.3 23.6 202 121-348 199-412 (479)
106 KOG0270 WD40 repeat-containing 99.9 3.3E-25 7.3E-30 191.6 19.9 250 127-433 176-454 (463)
107 KOG0269 WD40 repeat-containing 99.9 1.4E-25 3.1E-30 206.3 18.6 250 124-428 39-296 (839)
108 KOG4328 WD40 protein [Function 99.9 3.6E-25 7.7E-30 192.1 20.0 273 117-437 179-459 (498)
109 KOG0302 Ribosome Assembly prot 99.9 1.3E-24 2.8E-29 184.2 21.7 269 119-425 146-435 (440)
110 KOG1274 WD40 repeat protein [G 99.9 5.5E-24 1.2E-28 199.6 27.3 246 121-429 10-263 (933)
111 KOG1273 WD40 repeat protein [G 99.9 2.6E-24 5.6E-29 178.4 22.0 266 127-436 26-330 (405)
112 KOG0650 WD40 repeat nucleolar 99.9 9.9E-25 2.2E-29 195.2 20.9 277 111-425 387-732 (733)
113 KOG0646 WD40 repeat protein [G 99.9 1E-24 2.3E-29 189.7 19.7 223 121-355 78-316 (476)
114 KOG0301 Phospholipase A2-activ 99.9 2.7E-24 5.8E-29 195.7 22.8 236 118-428 51-288 (745)
115 KOG0269 WD40 repeat-containing 99.9 2.5E-25 5.5E-30 204.6 16.0 246 126-429 89-341 (839)
116 KOG0300 WD40 repeat-containing 99.9 2.9E-24 6.3E-29 178.3 20.4 275 101-431 167-479 (481)
117 KOG1408 WD40 repeat protein [F 99.9 4.4E-24 9.5E-29 194.8 23.3 303 127-436 327-679 (1080)
118 KOG0301 Phospholipase A2-activ 99.9 1.7E-24 3.6E-29 197.0 20.0 248 117-437 7-256 (745)
119 KOG2919 Guanine nucleotide-bin 99.9 4.6E-24 1E-28 177.5 20.4 257 127-435 52-335 (406)
120 KOG0639 Transducin-like enhanc 99.9 8.1E-25 1.8E-29 191.9 16.6 255 121-437 416-672 (705)
121 KOG1539 WD repeat protein [Gen 99.9 3E-23 6.6E-28 192.6 26.7 321 102-436 180-614 (910)
122 KOG4283 Transcription-coupled 99.9 6.5E-24 1.4E-28 174.4 19.1 227 167-432 41-280 (397)
123 KOG0305 Anaphase promoting com 99.9 5.4E-24 1.2E-28 193.3 20.6 219 105-348 240-463 (484)
124 KOG1332 Vesicle coat complex C 99.9 4.5E-24 9.8E-29 170.8 16.9 218 115-347 47-287 (299)
125 KOG1446 Histone H3 (Lys4) meth 99.9 3.9E-22 8.5E-27 166.0 28.3 259 105-431 37-306 (311)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.2E-22 4.9E-27 182.2 29.4 253 117-438 24-289 (300)
127 KOG0267 Microtubule severing p 99.9 3.8E-25 8.2E-30 202.0 10.1 211 118-352 22-232 (825)
128 KOG0294 WD40 repeat-containing 99.9 3.9E-23 8.4E-28 171.5 20.7 215 107-349 66-284 (362)
129 KOG0639 Transducin-like enhanc 99.9 1.1E-23 2.5E-28 184.8 17.5 240 123-427 464-703 (705)
130 KOG0267 Microtubule severing p 99.9 2.7E-25 5.9E-30 202.9 7.4 233 136-438 4-236 (825)
131 KOG0321 WD40 repeat-containing 99.9 6.5E-23 1.4E-27 185.0 21.1 271 118-430 94-393 (720)
132 KOG0307 Vesicle coat complex C 99.9 5.2E-24 1.1E-28 204.5 14.3 253 123-431 63-330 (1049)
133 KOG0302 Ribosome Assembly prot 99.9 3.9E-23 8.4E-28 175.3 17.4 226 166-429 148-379 (440)
134 KOG1408 WD40 repeat protein [F 99.9 1.3E-22 2.8E-27 185.4 20.1 248 123-433 458-718 (1080)
135 KOG1036 Mitotic spindle checkp 99.9 1.2E-21 2.7E-26 162.3 21.7 208 117-349 47-265 (323)
136 KOG2055 WD40 repeat protein [G 99.9 3.1E-22 6.7E-27 174.1 18.7 205 123-347 212-418 (514)
137 KOG2048 WD40 repeat protein [G 99.9 3.5E-21 7.5E-26 175.2 25.9 247 121-431 22-278 (691)
138 KOG0647 mRNA export protein (c 99.9 1.5E-21 3.3E-26 161.2 21.1 205 117-347 65-282 (347)
139 KOG2106 Uncharacterized conser 99.9 6.1E-21 1.3E-25 167.9 25.4 294 108-431 138-480 (626)
140 KOG2106 Uncharacterized conser 99.9 1.1E-20 2.3E-25 166.4 26.6 254 125-432 247-525 (626)
141 KOG1007 WD repeat protein TSSC 99.9 2.1E-21 4.5E-26 159.3 20.7 286 118-428 57-361 (370)
142 KOG1063 RNA polymerase II elon 99.9 1.7E-21 3.8E-26 177.5 21.1 277 119-428 356-699 (764)
143 KOG1063 RNA polymerase II elon 99.9 7.1E-21 1.5E-25 173.5 24.8 277 101-430 286-650 (764)
144 KOG0321 WD40 repeat-containing 99.9 1.7E-21 3.7E-26 176.0 20.0 252 128-431 53-350 (720)
145 KOG0268 Sof1-like rRNA process 99.9 1.3E-22 2.8E-27 171.4 12.1 206 165-432 62-306 (433)
146 KOG0307 Vesicle coat complex C 99.9 1.3E-22 2.8E-27 195.0 11.0 256 128-438 10-294 (1049)
147 KOG1273 WD40 repeat protein [G 99.9 3.8E-21 8.2E-26 159.7 16.5 215 172-437 26-289 (405)
148 KOG1539 WD repeat protein [Gen 99.9 1.1E-20 2.3E-25 175.8 21.4 202 123-347 447-649 (910)
149 KOG1188 WD40 repeat protein [G 99.9 3.4E-20 7.3E-25 155.8 22.1 201 137-354 41-250 (376)
150 KOG4378 Nuclear protein COP1 [ 99.9 4.4E-21 9.6E-26 168.4 17.2 201 126-349 81-283 (673)
151 KOG1034 Transcriptional repres 99.9 6.2E-21 1.3E-25 159.3 17.1 253 122-429 87-384 (385)
152 KOG1274 WD40 repeat protein [G 99.9 4.8E-20 1E-24 173.4 25.1 214 108-347 39-263 (933)
153 KOG2445 Nuclear pore complex c 99.9 1.1E-19 2.3E-24 150.7 23.5 225 119-347 54-319 (361)
154 KOG0270 WD40 repeat-containing 99.9 6.8E-21 1.5E-25 165.2 17.2 209 121-351 240-454 (463)
155 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.6E-19 1E-23 160.4 30.0 233 136-434 1-243 (300)
156 KOG0322 G-protein beta subunit 99.9 1.3E-20 2.8E-25 152.8 16.4 270 112-427 2-322 (323)
157 KOG0290 Conserved WD40 repeat- 99.9 9.1E-20 2E-24 149.9 21.4 255 124-430 44-320 (364)
158 KOG2048 WD40 repeat protein [G 99.9 2.9E-19 6.3E-24 162.8 25.8 204 123-350 68-279 (691)
159 KOG2096 WD40 repeat protein [G 99.9 4E-20 8.6E-25 153.9 18.4 215 164-428 81-308 (420)
160 KOG1587 Cytoplasmic dynein int 99.9 1.9E-19 4.2E-24 168.5 25.2 278 105-428 223-516 (555)
161 KOG0303 Actin-binding protein 99.9 1.3E-19 2.8E-24 155.0 20.7 244 135-431 43-297 (472)
162 KOG1034 Transcriptional repres 99.8 6.2E-20 1.3E-24 153.4 17.4 270 119-433 33-342 (385)
163 KOG1538 Uncharacterized conser 99.8 1.2E-19 2.7E-24 164.9 20.2 261 100-431 29-296 (1081)
164 KOG4378 Nuclear protein COP1 [ 99.8 8.1E-20 1.8E-24 160.6 18.2 242 126-431 36-283 (673)
165 KOG2919 Guanine nucleotide-bin 99.8 4.4E-19 9.6E-24 148.1 20.0 210 124-348 104-329 (406)
166 KOG1009 Chromatin assembly com 99.8 1.3E-18 2.8E-23 149.5 23.0 306 124-432 13-376 (434)
167 KOG4328 WD40 protein [Function 99.8 4.5E-19 9.6E-24 154.5 19.3 215 116-347 226-451 (498)
168 KOG0303 Actin-binding protein 99.8 4.8E-19 1E-23 151.6 19.0 211 119-349 76-297 (472)
169 KOG0290 Conserved WD40 repeat- 99.8 1.2E-18 2.7E-23 143.3 18.5 211 121-349 93-321 (364)
170 KOG4227 WD40 repeat protein [G 99.8 1.1E-18 2.3E-23 149.3 18.2 257 118-429 50-323 (609)
171 KOG1334 WD40 repeat protein [G 99.8 4.3E-19 9.3E-24 155.8 16.0 281 116-437 134-433 (559)
172 KOG2110 Uncharacterized conser 99.8 5.3E-17 1.2E-21 138.2 27.2 238 124-430 5-250 (391)
173 KOG1007 WD repeat protein TSSC 99.8 2.5E-18 5.4E-23 141.4 18.1 209 122-347 121-362 (370)
174 KOG1517 Guanine nucleotide bin 99.8 6.7E-18 1.5E-22 161.2 23.6 300 122-431 1062-1384(1387)
175 KOG0649 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 133.5 21.9 211 126-351 12-240 (325)
176 KOG0642 Cell-cycle nuclear pro 99.8 1E-18 2.2E-23 156.2 16.3 220 119-350 289-565 (577)
177 KOG0644 Uncharacterized conser 99.8 1.9E-19 4.2E-24 167.5 11.9 248 117-432 183-472 (1113)
178 PRK11028 6-phosphogluconolacto 99.8 1.3E-16 2.7E-21 146.1 29.4 252 124-428 34-304 (330)
179 COG2319 FOG: WD40 repeat [Gene 99.8 1.8E-16 3.9E-21 150.6 31.5 252 119-433 60-319 (466)
180 KOG1445 Tumor-specific antigen 99.8 2E-18 4.4E-23 156.2 16.2 204 131-347 586-799 (1012)
181 KOG1524 WD40 repeat-containing 99.8 4.1E-18 8.9E-23 151.4 17.2 210 137-427 76-285 (737)
182 KOG1523 Actin-related protein 99.8 3.8E-17 8.3E-22 136.5 20.9 212 123-349 9-239 (361)
183 KOG0771 Prolactin regulatory e 99.8 5.4E-18 1.2E-22 146.7 15.5 197 128-347 148-355 (398)
184 KOG1272 WD40-repeat-containing 99.8 1.1E-18 2.5E-23 152.3 9.6 198 124-349 129-326 (545)
185 KOG1310 WD40 repeat protein [G 99.8 1.2E-17 2.7E-22 148.8 16.1 231 116-354 42-311 (758)
186 KOG2110 Uncharacterized conser 99.8 5.2E-15 1.1E-19 126.2 29.9 196 127-349 49-251 (391)
187 KOG1963 WD40 repeat protein [G 99.8 2.6E-16 5.7E-21 148.1 24.1 162 121-300 202-375 (792)
188 PRK01742 tolB translocation pr 99.8 1.1E-16 2.4E-21 151.1 22.1 202 114-347 193-402 (429)
189 COG2319 FOG: WD40 repeat [Gene 99.8 3.4E-15 7.3E-20 141.8 32.4 209 116-348 100-316 (466)
190 KOG1445 Tumor-specific antigen 99.8 1E-17 2.3E-22 151.7 13.9 157 177-349 587-753 (1012)
191 KOG1538 Uncharacterized conser 99.8 4.2E-17 9.1E-22 148.7 17.5 238 126-436 14-259 (1081)
192 KOG2394 WD40 protein DMR-N9 [G 99.7 1.1E-15 2.3E-20 136.4 24.2 209 126-352 125-368 (636)
193 PRK01742 tolB translocation pr 99.7 1.2E-16 2.7E-21 150.7 19.5 220 145-436 183-411 (429)
194 KOG1240 Protein kinase contain 99.7 9.9E-16 2.2E-20 148.8 25.2 283 118-433 1042-1339(1431)
195 KOG1009 Chromatin assembly com 99.7 1E-16 2.3E-21 137.9 15.7 168 170-349 14-198 (434)
196 KOG1310 WD40 repeat protein [G 99.7 7.1E-17 1.5E-21 144.0 14.6 239 164-434 45-309 (758)
197 KOG0650 WD40 repeat nucleolar 99.7 8.9E-17 1.9E-21 144.8 15.1 219 163-426 394-678 (733)
198 KOG2139 WD40 repeat protein [G 99.7 7.2E-15 1.6E-19 125.0 25.3 251 123-428 139-431 (445)
199 KOG1587 Cytoplasmic dynein int 99.7 1.8E-15 4E-20 142.0 23.6 234 146-430 222-474 (555)
200 KOG0649 WD40 repeat protein [G 99.7 1.4E-14 3E-19 116.7 24.9 199 119-347 57-275 (325)
201 KOG1272 WD40-repeat-containing 99.7 4.7E-18 1E-22 148.5 5.4 240 75-344 119-360 (545)
202 KOG1188 WD40 repeat protein [G 99.7 2.5E-16 5.4E-21 132.7 14.4 219 115-347 61-347 (376)
203 PRK11028 6-phosphogluconolacto 99.7 9.5E-15 2.1E-19 133.8 25.7 239 139-429 5-259 (330)
204 KOG1523 Actin-related protein 99.7 1.2E-15 2.5E-20 127.7 16.9 225 170-431 11-239 (361)
205 KOG1354 Serine/threonine prote 99.7 2E-15 4.3E-20 127.5 18.2 273 124-431 25-362 (433)
206 PRK03629 tolB translocation pr 99.7 2.6E-14 5.7E-19 134.6 27.7 205 114-347 188-407 (429)
207 KOG2394 WD40 protein DMR-N9 [G 99.7 6.4E-16 1.4E-20 137.7 15.0 186 134-325 183-383 (636)
208 KOG1963 WD40 repeat protein [G 99.7 4.2E-15 9E-20 140.2 21.0 270 129-437 21-384 (792)
209 KOG0642 Cell-cycle nuclear pro 99.7 9.3E-16 2E-20 137.5 15.1 198 113-316 333-573 (577)
210 KOG0771 Prolactin regulatory e 99.7 2E-15 4.4E-20 130.9 16.4 199 173-429 148-355 (398)
211 PRK03629 tolB translocation pr 99.7 5.6E-14 1.2E-18 132.4 27.2 216 147-433 180-410 (429)
212 PRK05137 tolB translocation pr 99.7 1.1E-13 2.4E-18 131.1 27.2 217 146-432 182-416 (435)
213 KOG2321 WD40 repeat protein [G 99.7 1.6E-14 3.5E-19 129.9 19.5 252 122-439 49-313 (703)
214 KOG0322 G-protein beta subunit 99.6 1.5E-14 3.2E-19 118.0 16.9 226 108-345 39-322 (323)
215 KOG2111 Uncharacterized conser 99.6 2.5E-13 5.4E-18 113.9 24.0 240 127-431 8-259 (346)
216 PRK04922 tolB translocation pr 99.6 1.1E-13 2.4E-18 131.0 24.8 206 113-347 192-412 (433)
217 KOG4497 Uncharacterized conser 99.6 2.1E-14 4.6E-19 120.7 17.4 198 129-354 13-248 (447)
218 PRK05137 tolB translocation pr 99.6 2.2E-13 4.7E-18 129.2 26.7 206 113-347 190-413 (435)
219 KOG0644 Uncharacterized conser 99.6 3.3E-16 7.1E-21 146.3 6.9 243 164-435 185-433 (1113)
220 KOG1524 WD40 repeat-containing 99.6 8.9E-15 1.9E-19 130.5 15.0 187 117-343 97-283 (737)
221 KOG4227 WD40 repeat protein [G 99.6 9.5E-14 2.1E-18 119.4 20.5 266 121-427 102-386 (609)
222 KOG3881 Uncharacterized conser 99.6 5E-14 1.1E-18 121.2 18.5 211 124-353 105-327 (412)
223 PF02239 Cytochrom_D1: Cytochr 99.6 1.2E-12 2.5E-17 119.8 28.8 265 119-437 31-356 (369)
224 KOG3881 Uncharacterized conser 99.6 1.7E-13 3.6E-18 118.0 20.8 254 124-435 55-327 (412)
225 KOG2139 WD40 repeat protein [G 99.6 1.4E-13 3E-18 117.3 19.7 210 124-347 98-310 (445)
226 PRK02889 tolB translocation pr 99.6 8.1E-13 1.8E-17 124.7 26.7 197 113-338 184-392 (427)
227 PRK04922 tolB translocation pr 99.6 2.4E-13 5.2E-18 128.7 22.6 214 146-429 184-412 (433)
228 KOG2111 Uncharacterized conser 99.6 4.7E-12 1E-16 106.3 27.3 178 146-349 75-259 (346)
229 PF08662 eIF2A: Eukaryotic tra 99.6 2.2E-13 4.7E-18 113.2 19.3 150 173-347 9-180 (194)
230 PRK02889 tolB translocation pr 99.6 2.9E-13 6.2E-18 127.7 22.0 176 146-347 176-361 (427)
231 PF08662 eIF2A: Eukaryotic tra 99.6 4.6E-13 1E-17 111.3 19.6 156 128-311 9-185 (194)
232 KOG0280 Uncharacterized conser 99.6 1.1E-12 2.4E-17 108.9 20.7 254 124-431 69-336 (339)
233 KOG4547 WD40 repeat-containing 99.6 1.2E-12 2.6E-17 118.8 22.6 194 133-347 2-221 (541)
234 PF02239 Cytochrom_D1: Cytochr 99.6 1.2E-11 2.6E-16 113.2 28.7 272 137-438 6-312 (369)
235 KOG1517 Guanine nucleotide bin 99.5 4.2E-13 9.2E-18 129.0 17.3 199 128-348 1169-1383(1387)
236 TIGR02800 propeller_TolB tol-p 99.5 8.5E-12 1.9E-16 118.4 26.2 174 146-347 170-355 (417)
237 KOG0974 WD-repeat protein WDR6 99.5 8.1E-13 1.7E-17 127.2 17.9 199 172-429 90-289 (967)
238 KOG0280 Uncharacterized conser 99.5 3.4E-12 7.4E-17 106.0 19.1 192 145-349 45-244 (339)
239 KOG1409 Uncharacterized conser 99.5 3.1E-12 6.8E-17 108.5 19.2 215 117-350 17-274 (404)
240 PRK00178 tolB translocation pr 99.5 1.7E-11 3.8E-16 116.4 26.6 204 114-346 188-406 (430)
241 PRK04792 tolB translocation pr 99.5 2.3E-11 5E-16 115.2 26.7 204 114-346 207-425 (448)
242 TIGR02800 propeller_TolB tol-p 99.5 1.1E-11 2.3E-16 117.7 24.3 203 114-345 179-396 (417)
243 PF10282 Lactonase: Lactonase, 99.5 3.3E-10 7.1E-15 103.9 32.6 270 124-433 36-329 (345)
244 PRK00178 tolB translocation pr 99.5 3.8E-11 8.2E-16 114.1 27.1 173 147-347 180-364 (430)
245 KOG1240 Protein kinase contain 99.5 2.9E-12 6.3E-17 125.2 18.9 219 164-432 1043-1277(1431)
246 KOG0974 WD-repeat protein WDR6 99.5 1.7E-12 3.6E-17 125.0 17.0 202 124-349 87-291 (967)
247 KOG1064 RAVE (regulator of V-A 99.5 7.6E-13 1.6E-17 133.5 13.8 198 121-354 2205-2406(2439)
248 PRK04792 tolB translocation pr 99.4 2.2E-11 4.7E-16 115.4 22.2 173 147-347 199-383 (448)
249 KOG1334 WD40 repeat protein [G 99.4 1.4E-12 3.1E-17 115.4 12.8 280 101-431 161-469 (559)
250 PRK01029 tolB translocation pr 99.4 7E-11 1.5E-15 111.0 24.6 223 146-432 165-407 (428)
251 PRK01029 tolB translocation pr 99.4 1.1E-10 2.5E-15 109.6 25.2 212 114-348 174-405 (428)
252 KOG4497 Uncharacterized conser 99.4 1.6E-12 3.4E-17 109.6 11.0 225 175-433 14-245 (447)
253 KOG1064 RAVE (regulator of V-A 99.4 1.1E-12 2.4E-17 132.3 11.9 197 171-439 2210-2409(2439)
254 KOG4547 WD40 repeat-containing 99.4 5.3E-11 1.1E-15 108.2 21.2 195 179-429 3-221 (541)
255 KOG2321 WD40 repeat protein [G 99.4 1.4E-11 3E-16 111.4 16.6 208 129-349 138-346 (703)
256 KOG1409 Uncharacterized conser 99.4 4.2E-11 9.1E-16 101.8 17.4 228 119-347 63-395 (404)
257 COG5170 CDC55 Serine/threonine 99.4 1.6E-11 3.4E-16 103.0 14.6 223 124-349 26-312 (460)
258 KOG2315 Predicted translation 99.4 3.7E-10 8.1E-15 102.2 23.9 238 128-435 129-396 (566)
259 COG4946 Uncharacterized protei 99.4 5.9E-10 1.3E-14 98.9 24.3 189 132-347 274-478 (668)
260 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.5E-09 9.7E-14 94.2 28.9 244 132-437 53-339 (352)
261 KOG0309 Conserved WD40 repeat- 99.3 1.3E-11 2.8E-16 114.7 11.5 285 124-429 24-340 (1081)
262 COG5354 Uncharacterized protei 99.3 3.6E-09 7.9E-14 94.8 26.0 219 118-348 26-308 (561)
263 COG2706 3-carboxymuconate cycl 99.3 1.7E-08 3.7E-13 87.1 29.1 222 120-347 35-275 (346)
264 PLN02919 haloacid dehalogenase 99.3 3.2E-09 6.9E-14 110.0 28.5 269 128-432 571-892 (1057)
265 PF10282 Lactonase: Lactonase, 99.3 1.7E-08 3.6E-13 92.8 29.1 210 124-347 86-323 (345)
266 PF15492 Nbas_N: Neuroblastoma 99.2 2.6E-08 5.5E-13 83.6 25.6 212 130-353 3-266 (282)
267 KOG2314 Translation initiation 99.2 6E-09 1.3E-13 94.4 21.9 219 125-347 250-526 (698)
268 KOG3914 WD repeat protein WDR4 99.2 3.2E-10 6.9E-15 98.6 12.9 164 126-312 64-231 (390)
269 KOG2695 WD40 repeat protein [G 99.2 5.7E-11 1.2E-15 101.0 8.0 157 243-438 228-386 (425)
270 KOG4532 WD40-like repeat conta 99.2 8.5E-09 1.8E-13 85.1 20.2 196 136-350 84-286 (344)
271 KOG1354 Serine/threonine prote 99.2 1.3E-09 2.8E-14 92.8 15.9 213 123-349 83-362 (433)
272 KOG3914 WD repeat protein WDR4 99.2 3.5E-10 7.6E-15 98.3 12.0 161 229-437 64-232 (390)
273 PF04762 IKI3: IKI3 family; I 99.2 3.3E-08 7.1E-13 100.7 27.9 218 122-348 73-335 (928)
274 KOG4190 Uncharacterized conser 99.2 1.7E-10 3.8E-15 104.0 9.8 210 118-347 729-949 (1034)
275 KOG4714 Nucleoporin [Nuclear s 99.1 1.6E-09 3.4E-14 88.9 14.0 202 127-347 39-255 (319)
276 KOG2041 WD40 repeat protein [G 99.1 3E-09 6.5E-14 99.1 17.0 207 124-347 14-248 (1189)
277 KOG2315 Predicted translation 99.1 1.9E-08 4.1E-13 91.4 21.5 198 123-347 164-391 (566)
278 PRK04043 tolB translocation pr 99.1 4.1E-08 8.8E-13 91.9 24.2 191 126-347 189-401 (419)
279 KOG2041 WD40 repeat protein [G 99.1 7E-09 1.5E-13 96.7 18.4 198 117-337 64-279 (1189)
280 COG2706 3-carboxymuconate cycl 99.1 1.3E-07 2.9E-12 81.8 24.8 206 128-347 92-322 (346)
281 KOG2314 Translation initiation 99.1 1.3E-08 2.8E-13 92.3 19.4 142 124-286 210-362 (698)
282 PRK04043 tolB translocation pr 99.1 1E-07 2.2E-12 89.3 25.3 171 146-347 169-358 (419)
283 KOG0309 Conserved WD40 repeat- 99.1 5.7E-10 1.2E-14 104.1 9.7 225 108-347 50-340 (1081)
284 PF13360 PQQ_2: PQQ-like domai 99.1 5.5E-07 1.2E-11 78.4 27.3 218 145-433 2-235 (238)
285 COG4946 Uncharacterized protei 99.0 8.1E-08 1.8E-12 85.6 21.3 175 132-335 327-507 (668)
286 KOG2695 WD40 repeat protein [G 99.0 1.6E-09 3.4E-14 92.5 10.2 151 185-355 228-385 (425)
287 PLN02919 haloacid dehalogenase 99.0 2.1E-07 4.6E-12 96.7 27.5 214 126-350 625-892 (1057)
288 TIGR03300 assembly_YfgL outer 99.0 3.2E-07 6.9E-12 85.8 25.1 227 135-436 64-305 (377)
289 KOG4714 Nucleoporin [Nuclear s 99.0 3.8E-09 8.3E-14 86.7 9.9 213 112-344 77-316 (319)
290 KOG1912 WD40 repeat protein [G 99.0 1.8E-07 3.9E-12 88.4 21.6 245 126-429 17-305 (1062)
291 KOG1832 HIV-1 Vpr-binding prot 99.0 4.1E-10 8.8E-15 107.1 4.4 200 117-354 1094-1299(1516)
292 TIGR03300 assembly_YfgL outer 99.0 3.2E-07 6.8E-12 85.8 23.7 232 135-437 104-347 (377)
293 TIGR02658 TTQ_MADH_Hv methylam 99.0 6.3E-07 1.4E-11 80.6 24.3 180 146-347 27-224 (352)
294 PF15492 Nbas_N: Neuroblastoma 99.0 4.5E-07 9.7E-12 76.2 21.5 234 175-436 3-267 (282)
295 PF08450 SGL: SMP-30/Gluconola 98.9 1E-05 2.2E-10 70.7 30.2 196 129-346 4-213 (246)
296 KOG1920 IkappaB kinase complex 98.9 3.5E-06 7.7E-11 83.9 27.5 216 124-347 68-323 (1265)
297 KOG0882 Cyclophilin-related pe 98.9 4E-08 8.6E-13 87.0 12.4 283 123-434 8-311 (558)
298 PF07433 DUF1513: Protein of u 98.9 7.8E-06 1.7E-10 71.0 26.1 201 126-349 6-250 (305)
299 PF04762 IKI3: IKI3 family; I 98.8 5.1E-06 1.1E-10 85.1 27.5 200 125-347 22-290 (928)
300 COG5354 Uncharacterized protei 98.8 1.2E-06 2.6E-11 79.1 20.0 115 226-349 273-398 (561)
301 KOG0882 Cyclophilin-related pe 98.8 1.2E-07 2.7E-12 83.9 12.1 230 167-439 7-242 (558)
302 KOG4190 Uncharacterized conser 98.8 3.6E-08 7.9E-13 89.4 8.9 221 102-344 755-986 (1034)
303 PF00400 WD40: WD domain, G-be 98.8 2.7E-08 5.8E-13 59.0 5.6 38 307-344 2-39 (39)
304 PF08450 SGL: SMP-30/Gluconola 98.7 5.2E-05 1.1E-09 66.2 27.9 181 127-333 42-242 (246)
305 KOG4532 WD40-like repeat conta 98.7 1.2E-06 2.6E-11 72.7 15.8 160 127-299 161-330 (344)
306 KOG1275 PAB-dependent poly(A) 98.7 4.3E-07 9.2E-12 87.5 14.8 185 180-426 146-340 (1118)
307 PF00400 WD40: WD domain, G-be 98.7 3.2E-08 7E-13 58.6 4.7 37 116-152 3-39 (39)
308 KOG1912 WD40 repeat protein [G 98.7 1.9E-06 4.1E-11 81.7 18.4 216 108-347 39-305 (1062)
309 KOG1832 HIV-1 Vpr-binding prot 98.7 1.7E-08 3.6E-13 96.5 5.0 200 164-439 1096-1302(1516)
310 KOG2066 Vacuolar assembly/sort 98.7 2.1E-06 4.6E-11 81.8 18.6 141 135-300 82-233 (846)
311 PF13360 PQQ_2: PQQ-like domai 98.7 1.2E-05 2.5E-10 70.0 22.4 189 134-349 34-233 (238)
312 KOG2114 Vacuolar assembly/sort 98.7 1.7E-05 3.8E-10 76.3 24.0 206 131-348 30-245 (933)
313 KOG2066 Vacuolar assembly/sort 98.7 5.9E-07 1.3E-11 85.4 14.1 183 124-347 39-234 (846)
314 PF06977 SdiA-regulated: SdiA- 98.6 2.3E-05 4.9E-10 67.2 22.4 212 117-343 14-247 (248)
315 KOG3621 WD40 repeat-containing 98.6 1.8E-06 3.9E-11 81.1 16.8 162 123-300 32-197 (726)
316 KOG1275 PAB-dependent poly(A) 98.6 1.3E-06 2.9E-11 84.2 15.4 186 135-344 146-340 (1118)
317 PF11768 DUF3312: Protein of u 98.6 1.3E-06 2.7E-11 80.9 14.3 77 122-203 257-333 (545)
318 KOG1645 RING-finger-containing 98.6 7.1E-06 1.5E-10 72.1 17.8 154 118-290 187-351 (463)
319 COG5170 CDC55 Serine/threonine 98.5 1.9E-06 4.1E-11 73.0 12.4 209 124-346 85-367 (460)
320 PRK11138 outer membrane biogen 98.5 4.6E-05 9.9E-10 71.7 23.1 188 136-350 69-278 (394)
321 PF06433 Me-amine-dh_H: Methyl 98.5 0.00025 5.4E-09 62.6 25.6 249 128-439 39-331 (342)
322 PF07433 DUF1513: Protein of u 98.5 5.4E-05 1.2E-09 65.9 21.0 194 114-339 46-278 (305)
323 PRK11138 outer membrane biogen 98.5 5.8E-05 1.2E-09 71.0 22.3 234 135-436 119-361 (394)
324 PF11768 DUF3312: Protein of u 98.5 1.1E-05 2.5E-10 74.7 16.3 112 230-348 208-331 (545)
325 PF04053 Coatomer_WDAD: Coatom 98.4 0.00013 2.8E-09 68.4 23.0 231 124-435 32-269 (443)
326 KOG1008 Uncharacterized conser 98.4 7E-08 1.5E-12 89.2 1.2 207 125-348 57-277 (783)
327 KOG1645 RING-finger-containing 98.4 9.3E-06 2E-10 71.4 14.0 116 226-347 192-316 (463)
328 KOG1920 IkappaB kinase complex 98.4 0.00012 2.7E-09 73.4 22.7 156 169-347 68-275 (1265)
329 KOG3617 WD40 and TPR repeat-co 98.4 1.1E-05 2.4E-10 77.5 14.3 109 128-257 19-131 (1416)
330 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.00069 1.5E-08 56.6 20.3 142 136-299 23-164 (354)
331 PF08596 Lgl_C: Lethal giant l 98.2 0.00064 1.4E-08 63.0 22.7 213 126-351 3-295 (395)
332 cd00216 PQQ_DH Dehydrogenases 98.2 0.0019 4.2E-08 62.4 26.6 201 136-355 61-328 (488)
333 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00041 9E-09 64.1 20.9 218 124-345 42-312 (353)
334 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0024 5.2E-08 60.0 25.8 196 128-349 32-249 (410)
335 PF02897 Peptidase_S9_N: Proly 98.2 0.0069 1.5E-07 57.5 30.4 200 126-346 125-357 (414)
336 COG0823 TolB Periplasmic compo 98.2 0.00012 2.7E-09 68.3 16.5 193 116-336 184-389 (425)
337 KOG3617 WD40 and TPR repeat-co 98.1 0.00014 3E-09 70.3 16.0 72 126-200 61-132 (1416)
338 COG0823 TolB Periplasmic compo 98.1 0.00026 5.6E-09 66.2 17.7 154 170-347 193-359 (425)
339 KOG2114 Vacuolar assembly/sort 98.1 0.00034 7.4E-09 67.8 18.5 184 119-320 59-260 (933)
340 PRK02888 nitrous-oxide reducta 98.1 0.0017 3.7E-08 62.3 22.5 255 139-429 69-405 (635)
341 PF00780 CNH: CNH domain; Int 98.1 0.00073 1.6E-08 60.2 19.3 147 180-350 6-169 (275)
342 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0013 2.8E-08 55.1 17.7 139 181-343 23-162 (354)
343 PF14583 Pectate_lyase22: Olig 98.0 0.0041 8.9E-08 56.3 22.2 194 131-347 42-273 (386)
344 KOG1008 Uncharacterized conser 98.0 1.2E-06 2.7E-11 81.3 -0.2 166 118-301 96-276 (783)
345 PF03178 CPSF_A: CPSF A subuni 98.0 0.013 2.9E-07 53.4 25.8 178 146-347 2-203 (321)
346 KOG3621 WD40 repeat-containing 98.0 8.7E-05 1.9E-09 70.2 11.2 148 169-333 33-186 (726)
347 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.0093 2E-07 55.3 24.1 36 315-350 306-341 (415)
348 PRK02888 nitrous-oxide reducta 98.0 0.0011 2.4E-08 63.6 18.4 188 131-347 199-405 (635)
349 PF08596 Lgl_C: Lethal giant l 97.9 0.0053 1.2E-07 57.0 21.4 129 171-300 3-173 (395)
350 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0073 1.6E-07 55.9 22.2 107 133-247 1-120 (353)
351 COG3204 Uncharacterized protei 97.8 0.0087 1.9E-07 51.4 20.1 174 119-300 80-263 (316)
352 PRK13616 lipoprotein LpqB; Pro 97.8 0.0042 9.2E-08 60.8 20.0 184 125-341 350-563 (591)
353 COG3391 Uncharacterized conser 97.8 0.02 4.4E-07 53.4 23.6 201 127-353 76-290 (381)
354 COG3391 Uncharacterized conser 97.8 0.036 7.8E-07 51.7 27.2 197 126-348 32-241 (381)
355 KOG4441 Proteins containing BT 97.7 0.0093 2E-07 58.5 21.3 191 133-347 282-500 (571)
356 PF08553 VID27: VID27 cytoplas 97.7 0.0024 5.1E-08 63.6 16.5 136 189-346 502-647 (794)
357 PF08553 VID27: VID27 cytoplas 97.7 0.002 4.3E-08 64.1 15.7 147 135-299 492-646 (794)
358 PHA02713 hypothetical protein; 97.6 0.011 2.5E-07 58.0 20.5 123 147-291 273-408 (557)
359 smart00320 WD40 WD40 repeats. 97.6 0.00019 4E-09 41.4 5.2 38 307-344 3-40 (40)
360 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.012 2.6E-07 43.0 14.9 67 272-346 2-71 (111)
361 PF03178 CPSF_A: CPSF A subuni 97.6 0.016 3.4E-07 52.9 19.6 178 192-428 3-202 (321)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.034 7.5E-07 54.1 22.7 167 136-309 120-338 (527)
363 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.015 3.2E-07 42.5 15.1 100 230-341 2-109 (111)
364 COG3386 Gluconolactonase [Carb 97.6 0.055 1.2E-06 48.4 22.2 204 107-335 48-274 (307)
365 KOG4640 Anaphase-promoting com 97.6 0.00056 1.2E-08 64.2 9.7 83 120-206 16-99 (665)
366 PF06977 SdiA-regulated: SdiA- 97.5 0.047 1E-06 47.1 22.9 164 165-346 17-201 (248)
367 smart00320 WD40 WD40 repeats. 97.5 0.00017 3.7E-09 41.6 4.0 35 118-152 6-40 (40)
368 KOG2395 Protein involved in va 97.5 0.0053 1.2E-07 56.7 14.8 144 180-347 344-501 (644)
369 cd00216 PQQ_DH Dehydrogenases 97.5 0.015 3.2E-07 56.3 19.1 115 181-313 61-192 (488)
370 PF14583 Pectate_lyase22: Olig 97.5 0.076 1.6E-06 48.3 23.3 183 127-337 83-303 (386)
371 KOG4640 Anaphase-promoting com 97.5 0.00083 1.8E-08 63.1 9.6 92 229-326 22-115 (665)
372 KOG4499 Ca2+-binding protein R 97.5 0.016 3.4E-07 48.0 15.7 154 124-289 108-273 (310)
373 PF04053 Coatomer_WDAD: Coatom 97.5 0.02 4.2E-07 54.1 18.7 184 125-347 69-263 (443)
374 PHA02713 hypothetical protein; 97.5 0.0078 1.7E-07 59.1 16.8 187 135-347 303-534 (557)
375 COG3490 Uncharacterized protei 97.4 0.016 3.4E-07 49.5 15.4 194 131-346 120-348 (366)
376 KOG2444 WD40 repeat protein [G 97.2 0.0015 3.3E-08 53.7 7.0 106 239-348 70-179 (238)
377 PF04841 Vps16_N: Vps16, N-ter 97.2 0.22 4.8E-06 46.9 25.5 199 125-344 81-285 (410)
378 PF05694 SBP56: 56kDa selenium 97.2 0.13 2.7E-06 47.4 19.6 203 135-350 86-346 (461)
379 KOG2079 Vacuolar assembly/sort 97.1 0.0086 1.9E-07 60.1 12.7 108 132-256 95-202 (1206)
380 PF05096 Glu_cyclase_2: Glutam 97.1 0.15 3.2E-06 43.9 22.4 182 127-336 47-250 (264)
381 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0025 5.5E-08 38.7 5.6 31 124-154 11-41 (47)
382 PF06433 Me-amine-dh_H: Methyl 97.0 0.22 4.8E-06 44.5 20.6 203 104-315 107-331 (342)
383 PRK13616 lipoprotein LpqB; Pro 97.0 0.066 1.4E-06 52.7 17.8 150 171-346 351-525 (591)
384 COG3386 Gluconolactonase [Carb 97.0 0.26 5.6E-06 44.2 23.6 195 131-346 31-243 (307)
385 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0037 7.9E-08 38.0 5.5 32 228-260 12-43 (47)
386 COG3204 Uncharacterized protei 96.9 0.26 5.5E-06 42.8 19.8 201 127-347 45-264 (316)
387 PF00780 CNH: CNH domain; Int 96.8 0.31 6.7E-06 43.3 20.8 154 134-300 5-165 (275)
388 COG3490 Uncharacterized protei 96.8 0.28 6E-06 42.3 17.4 103 229-335 69-180 (366)
389 PHA03098 kelch-like protein; P 96.8 0.094 2E-06 51.7 17.3 188 134-347 293-512 (534)
390 KOG2377 Uncharacterized conser 96.7 0.5 1.1E-05 43.5 19.1 120 167-300 64-185 (657)
391 KOG2079 Vacuolar assembly/sort 96.7 0.0088 1.9E-07 60.0 8.7 102 238-346 98-203 (1206)
392 PF10647 Gmad1: Lipoprotein Lp 96.6 0.41 9E-06 41.8 19.8 147 126-292 25-187 (253)
393 KOG4441 Proteins containing BT 96.6 0.12 2.7E-06 50.8 16.4 193 128-347 326-547 (571)
394 PF10168 Nup88: Nuclear pore c 96.6 0.88 1.9E-05 45.9 21.9 89 168-260 83-182 (717)
395 KOG2444 WD40 repeat protein [G 96.6 0.0037 8.1E-08 51.5 4.6 103 181-300 70-177 (238)
396 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.5 0.93 2E-05 44.3 21.6 195 136-351 69-338 (527)
397 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 0.51 1.1E-05 44.1 18.6 97 174-278 6-117 (415)
398 PRK10115 protease 2; Provision 96.5 1.2 2.5E-05 45.3 29.4 196 125-346 127-344 (686)
399 PF02897 Peptidase_S9_N: Proly 96.5 0.83 1.8E-05 43.4 24.9 159 171-348 125-311 (414)
400 TIGR03074 PQQ_membr_DH membran 96.4 1.2 2.5E-05 45.5 22.2 124 136-266 194-353 (764)
401 PF15390 DUF4613: Domain of un 96.4 0.23 5E-06 47.2 15.7 115 229-347 58-187 (671)
402 KOG2395 Protein involved in va 96.4 0.065 1.4E-06 49.9 12.0 150 134-300 343-500 (644)
403 PHA03098 kelch-like protein; P 96.3 0.24 5.1E-06 48.9 16.7 103 180-300 294-414 (534)
404 PHA02790 Kelch-like protein; P 96.3 0.52 1.1E-05 45.6 18.3 185 134-347 270-471 (480)
405 PF14870 PSII_BNR: Photosynthe 96.2 0.85 1.8E-05 40.7 25.7 195 124-344 16-213 (302)
406 PF14727 PHTB1_N: PTHB1 N-term 96.2 1.1 2.4E-05 42.0 22.3 150 180-347 36-205 (418)
407 KOG2280 Vacuolar assembly/sort 96.0 1.1 2.5E-05 44.0 18.5 187 146-355 64-255 (829)
408 PF12234 Rav1p_C: RAVE protein 96.0 0.39 8.6E-06 47.1 15.6 113 233-347 35-157 (631)
409 PF05694 SBP56: 56kDa selenium 95.9 1.4 3.1E-05 40.8 20.3 158 130-302 135-344 (461)
410 PF15390 DUF4613: Domain of un 95.8 1.4 2.9E-05 42.3 17.7 156 124-300 19-186 (671)
411 PHA02790 Kelch-like protein; P 95.8 0.92 2E-05 43.9 17.4 142 180-347 271-424 (480)
412 PF10647 Gmad1: Lipoprotein Lp 95.7 1.4 2.9E-05 38.6 18.2 147 171-338 25-187 (253)
413 PF12234 Rav1p_C: RAVE protein 95.6 0.41 8.8E-06 47.0 14.1 122 127-256 32-155 (631)
414 PRK14131 N-acetylneuraminic ac 95.6 2 4.4E-05 40.1 19.2 70 135-206 38-121 (376)
415 PF10168 Nup88: Nuclear pore c 95.5 2.1 4.7E-05 43.3 19.3 77 124-201 84-181 (717)
416 PF05096 Glu_cyclase_2: Glutam 95.5 1.5 3.2E-05 38.0 19.2 112 229-349 46-160 (264)
417 KOG1897 Damage-specific DNA bi 95.5 3.5 7.6E-05 42.1 23.4 187 138-347 686-899 (1096)
418 KOG3630 Nuclear pore complex, 95.2 0.43 9.4E-06 48.9 12.9 152 171-334 102-261 (1405)
419 PF07995 GSDH: Glucose / Sorbo 95.2 2.5 5.4E-05 38.7 26.3 53 126-180 3-59 (331)
420 KOG2377 Uncharacterized conser 95.1 0.62 1.3E-05 43.0 12.5 101 228-334 67-171 (657)
421 PF10313 DUF2415: Uncharacteri 95.1 0.14 3E-06 30.1 5.7 32 125-156 1-35 (43)
422 KOG3630 Nuclear pore complex, 95.1 0.17 3.6E-06 51.7 9.8 115 229-347 102-229 (1405)
423 TIGR03118 PEPCTERM_chp_1 conse 95.0 2.4 5.1E-05 37.3 24.2 206 126-348 24-281 (336)
424 PF08728 CRT10: CRT10; InterP 95.0 2.2 4.7E-05 42.6 16.9 163 136-299 49-245 (717)
425 TIGR02604 Piru_Ver_Nterm putat 94.9 1.7 3.7E-05 40.5 15.6 156 125-289 14-202 (367)
426 PRK13684 Ycf48-like protein; P 94.9 3 6.6E-05 38.2 17.2 155 124-299 172-330 (334)
427 PF14781 BBS2_N: Ciliary BBSom 94.8 1.3 2.8E-05 33.7 12.4 114 175-300 4-125 (136)
428 TIGR02604 Piru_Ver_Nterm putat 94.7 1.7 3.6E-05 40.5 15.2 144 171-337 15-204 (367)
429 PF10313 DUF2415: Uncharacteri 94.6 0.14 3E-06 30.2 4.8 31 270-300 1-33 (43)
430 KOG1983 Tomosyn and related SN 94.2 6.1 0.00013 41.9 19.1 34 122-155 33-66 (993)
431 PRK10115 protease 2; Provision 94.2 7.4 0.00016 39.6 26.4 113 170-300 127-255 (686)
432 PF14870 PSII_BNR: Photosynthe 94.0 4.3 9.2E-05 36.4 26.1 105 228-337 145-253 (302)
433 PF13449 Phytase-like: Esteras 93.9 5 0.00011 36.7 17.3 120 124-247 19-166 (326)
434 KOG1897 Damage-specific DNA bi 93.9 8.7 0.00019 39.4 24.9 92 250-348 751-858 (1096)
435 COG5167 VID27 Protein involved 93.4 2.2 4.7E-05 40.2 12.5 148 133-300 476-632 (776)
436 TIGR03547 muta_rot_YjhT mutatr 93.4 6.4 0.00014 36.3 19.1 27 180-206 63-100 (346)
437 COG3823 Glutamine cyclotransfe 93.4 4 8.6E-05 33.8 14.1 170 135-334 55-247 (262)
438 PF14761 HPS3_N: Hermansky-Pud 93.4 3 6.4E-05 34.8 12.1 102 182-300 29-163 (215)
439 PF08728 CRT10: CRT10; InterP 93.3 9.8 0.00021 38.2 17.6 115 229-345 102-245 (717)
440 TIGR03074 PQQ_membr_DH membran 93.3 5.4 0.00012 40.9 16.3 113 239-356 194-354 (764)
441 COG5167 VID27 Protein involved 93.2 1.7 3.6E-05 40.9 11.4 144 180-348 478-634 (776)
442 PLN02193 nitrile-specifier pro 93.2 8.7 0.00019 37.2 18.6 148 135-300 175-351 (470)
443 TIGR03548 mutarot_permut cycli 93.1 6.7 0.00014 35.8 16.7 110 135-261 72-198 (323)
444 PF07569 Hira: TUP1-like enhan 93.1 0.76 1.6E-05 39.1 8.8 80 177-260 18-98 (219)
445 COG4590 ABC-type uncharacteriz 92.8 0.73 1.6E-05 42.5 8.5 164 169-350 220-390 (733)
446 KOG4460 Nuclear pore complex, 92.5 3.1 6.7E-05 39.3 12.2 88 168-260 102-201 (741)
447 PF07569 Hira: TUP1-like enhan 92.5 1.2 2.5E-05 37.9 9.1 73 132-205 18-101 (219)
448 smart00036 CNH Domain found in 92.5 7.8 0.00017 34.9 19.5 101 180-299 12-130 (302)
449 PF12657 TFIIIC_delta: Transcr 92.3 1.1 2.4E-05 36.5 8.5 31 317-347 86-122 (173)
450 PLN02153 epithiospecifier prot 92.3 9.2 0.0002 35.2 23.1 69 135-206 32-116 (341)
451 PLN02193 nitrile-specifier pro 92.1 12 0.00027 36.2 18.1 148 135-300 228-410 (470)
452 PF14781 BBS2_N: Ciliary BBSom 92.0 4.4 9.5E-05 31.0 14.2 118 128-264 2-132 (136)
453 KOG2280 Vacuolar assembly/sort 92.0 14 0.0003 36.9 16.2 111 228-349 217-336 (829)
454 PLN00033 photosystem II stabil 91.9 11 0.00024 35.4 18.5 154 125-297 239-396 (398)
455 KOG1916 Nuclear protein, conta 91.7 0.28 6.1E-06 48.9 5.0 213 119-347 127-375 (1283)
456 KOG2247 WD40 repeat-containing 91.6 0.021 4.6E-07 52.5 -2.4 147 126-295 36-183 (615)
457 PF12768 Rax2: Cortical protei 91.2 10 0.00022 33.6 13.8 93 191-300 16-123 (281)
458 PLN02153 epithiospecifier prot 90.9 13 0.00028 34.2 18.5 24 238-261 85-113 (341)
459 KOG1916 Nuclear protein, conta 90.8 0.4 8.7E-06 47.9 5.0 115 226-347 131-266 (1283)
460 PF14761 HPS3_N: Hermansky-Pud 90.6 9.1 0.0002 32.0 14.9 151 137-299 29-213 (215)
461 TIGR03118 PEPCTERM_chp_1 conse 90.6 12 0.00025 33.2 19.7 120 172-300 25-170 (336)
462 KOG1983 Tomosyn and related SN 90.5 3.8 8.2E-05 43.3 12.0 34 170-203 36-69 (993)
463 TIGR03547 muta_rot_YjhT mutatr 90.3 15 0.00032 33.9 18.1 56 134-190 62-128 (346)
464 KOG2247 WD40 repeat-containing 90.2 0.04 8.7E-07 50.8 -2.1 136 173-332 38-175 (615)
465 TIGR03606 non_repeat_PQQ dehyd 90.1 12 0.00026 35.7 13.9 57 125-181 30-90 (454)
466 PF10214 Rrn6: RNA polymerase 90.0 26 0.00057 36.4 23.9 174 122-301 77-277 (765)
467 TIGR03548 mutarot_permut cycli 89.9 15 0.00033 33.4 21.2 61 238-300 123-194 (323)
468 KOG1900 Nuclear pore complex, 89.6 6 0.00013 41.9 12.2 34 314-347 240-273 (1311)
469 PRK13684 Ycf48-like protein; P 89.5 17 0.00037 33.3 20.4 151 169-345 172-330 (334)
470 PF07250 Glyoxal_oxid_N: Glyox 89.4 6.4 0.00014 33.9 10.6 126 131-268 73-208 (243)
471 KOG4460 Nuclear pore complex, 88.8 12 0.00026 35.7 12.4 81 271-352 105-204 (741)
472 PF11715 Nup160: Nucleoporin N 88.7 2.7 6E-05 41.6 9.3 74 134-207 156-256 (547)
473 TIGR02276 beta_rpt_yvtn 40-res 88.7 3.2 6.9E-05 24.1 6.3 31 237-267 1-32 (42)
474 KOG4499 Ca2+-binding protein R 88.7 14 0.0003 31.3 19.6 117 229-349 110-244 (310)
475 PF07995 GSDH: Glucose / Sorbo 88.4 14 0.0003 33.9 13.0 107 229-337 3-134 (331)
476 PF12768 Rax2: Cortical protei 88.2 18 0.00039 32.1 14.7 118 146-278 16-145 (281)
477 PF07676 PD40: WD40-like Beta 88.1 3.3 7.1E-05 23.7 5.8 32 312-343 4-38 (39)
478 COG4257 Vgb Streptogramin lyas 87.4 19 0.00041 31.4 17.1 202 124-347 61-263 (353)
479 PF10395 Utp8: Utp8 family; I 87.4 33 0.00072 34.3 17.2 159 124-299 129-304 (670)
480 PF13449 Phytase-like: Esteras 87.1 24 0.00052 32.2 17.4 169 171-346 21-249 (326)
481 PF14727 PHTB1_N: PTHB1 N-term 86.4 30 0.00065 32.7 26.0 152 135-300 36-204 (418)
482 PF11715 Nup160: Nucleoporin N 86.2 4.5 9.8E-05 40.1 9.1 87 179-265 156-256 (547)
483 PF12657 TFIIIC_delta: Transcr 86.1 11 0.00023 30.7 9.8 34 396-429 87-122 (173)
484 COG5276 Uncharacterized conser 85.8 24 0.00052 31.1 23.8 156 171-351 88-246 (370)
485 PRK14131 N-acetylneuraminic ac 85.8 31 0.00067 32.3 16.4 15 192-206 190-204 (376)
486 PF11635 Med16: Mediator compl 85.6 48 0.001 34.4 17.3 204 177-423 56-345 (753)
487 KOG2063 Vacuolar assembly/sort 85.5 40 0.00088 35.0 15.1 73 130-203 20-100 (877)
488 PF05935 Arylsulfotrans: Aryls 84.8 40 0.00086 32.7 20.8 135 130-268 153-312 (477)
489 PF02333 Phytase: Phytase; In 84.4 35 0.00076 31.7 21.6 152 179-347 66-238 (381)
490 COG5276 Uncharacterized conser 84.2 29 0.00063 30.6 25.7 152 130-300 132-285 (370)
491 TIGR02276 beta_rpt_yvtn 40-res 83.7 6.4 0.00014 22.7 6.3 30 134-163 1-31 (42)
492 PF07250 Glyoxal_oxid_N: Glyox 83.6 21 0.00045 30.9 10.6 85 251-337 48-138 (243)
493 KOG3616 Selective LIM binding 83.0 40 0.00086 33.9 13.2 68 124-197 14-81 (1636)
494 PF07676 PD40: WD40-like Beta 82.5 4.9 0.00011 22.9 4.7 29 123-151 7-38 (39)
495 PF03088 Str_synth: Strictosid 82.5 14 0.00031 26.1 7.7 41 144-188 35-75 (89)
496 PF05935 Arylsulfotrans: Aryls 82.5 50 0.0011 32.1 17.6 147 144-315 126-312 (477)
497 PF02333 Phytase: Phytase; In 81.5 45 0.00098 31.0 21.0 197 134-347 66-291 (381)
498 smart00564 PQQ beta-propeller 81.2 2.2 4.7E-05 23.3 2.8 24 411-434 7-30 (33)
499 TIGR03606 non_repeat_PQQ dehyd 80.2 57 0.0012 31.3 14.0 59 172-239 32-90 (454)
500 TIGR03032 conserved hypothetic 80.2 39 0.00084 30.3 11.1 80 180-278 212-313 (335)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-45 Score=309.13 Aligned_cols=263 Identities=25% Similarity=0.366 Sum_probs=225.4
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeE
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 193 (443)
.++...+.||.++|.|++|+|+|+.||+|+.|.++++||+.+.... ....+|..-|.+++|+|||+.||+|+.||+|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGKKIASGSKDGSI 181 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---eeecCCccEEEEEEECCCcchhhccccCCeE
Confidence 4566778999999999999999999999999999999999986433 3578999999999999999999999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-----CCCEEEEEecCCeEEEEECCCCeeeEEeecc
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 268 (443)
++||.++++.... ...+|+-.|++++|.| ..++|++++.||.|+|||+..++++..+.+|
T Consensus 182 ~lwdpktg~~~g~---------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 182 RLWDPKTGQQIGR---------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred EEecCCCCCcccc---------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC
Confidence 9999999876432 2236888999999987 5679999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccC----------------------------------------------
Q 013436 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL---------------------------------------------- 302 (443)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~---------------------------------------------- 302 (443)
+.+|+|++|- ...+|++|+.|++|++|+....
T Consensus 247 T~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 247 TASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred ccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 9999999994 5669999999999999985510
Q ss_pred -----------------------------CCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccc
Q 013436 303 -----------------------------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 303 -----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (443)
....+++....+|..-|+.+.|+||++++|+++.|..|++||.++
T Consensus 325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t------ 398 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT------ 398 (480)
T ss_pred HHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC------
Confidence 001234445678999999999999999999999999999999999
Q ss_pred cCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhh
Q 013436 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
++.+..|+||-.. +|..+||.|.++|++|+.|.++++||+++.++.
T Consensus 399 ----------------------------Gk~lasfRGHv~~------VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 399 ----------------------------GKFLASFRGHVAA------VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred ----------------------------cchhhhhhhccce------eEEEEeccCccEEEEcCCCceEEEEEeeeeeec
Confidence 6678889999743 344457779999999999999999999998875
Q ss_pred hHh
Q 013436 434 FCR 436 (443)
Q Consensus 434 ~~~ 436 (443)
.-+
T Consensus 445 ~DL 447 (480)
T KOG0271|consen 445 QDL 447 (480)
T ss_pred ccC
Confidence 443
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.2e-44 Score=305.77 Aligned_cols=255 Identities=22% Similarity=0.311 Sum_probs=229.4
Q ss_pred eecccccCCCccccCCCCceEEEEECCC--CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE
Q 013436 108 LSRYLPVNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 185 (443)
+|.........+|.+|.+.|.++.|+|. +..+|+|+.||++++|++++...+. .+.+|...|..++|+|+|++|+
T Consensus 201 vW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~~L~ 277 (459)
T KOG0272|consen 201 VWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGKFLG 277 (459)
T ss_pred EeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCceee
Confidence 4555555667899999999999999997 5689999999999999999864444 5778889999999999999999
Q ss_pred EEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEe
Q 013436 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (443)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 265 (443)
+++.|.+-++||+.++....... ||..+|.+++|+|||..+++|+.|..-+|||++++.++..+
T Consensus 278 TasfD~tWRlWD~~tk~ElL~QE----------------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 278 TASFDSTWRLWDLETKSELLLQE----------------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred ecccccchhhcccccchhhHhhc----------------ccccccceeEecCCCceeeccCccchhheeecccCcEEEEe
Confidence 99999999999999987654332 78889999999999999999999999999999999999999
Q ss_pred eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC-CCCEEEEEeCCCCEEEEe
Q 013436 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd 344 (443)
.+|...|.+|.|+ |+|..||+|+.|++++|||+| ....+..+.+|..-|+.+.|+| .|.+|+|++.|++++||.
T Consensus 342 ~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR----~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 342 AGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLR----MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred cccccceeeEeEC-CCceEEeecCCCCcEEEeeec----ccccceecccccchhhheEecccCCeEEEEcccCcceeeec
Confidence 9999999999997 999999999999999999999 6777999999999999999999 788999999999999999
Q ss_pred CCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEE
Q 013436 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (443)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~i 424 (443)
.++ ..+++.+.||... +++.++++|+.+++|++.|.++++
T Consensus 417 ~~~----------------------------------~~~~ksLaGHe~k------V~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 417 TRT----------------------------------WSPLKSLAGHEGK------VISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCC----------------------------------cccchhhcCCccc------eEEEEeccCCceEEEeccCceeee
Confidence 998 5668889999843 334457779999999999999999
Q ss_pred EE
Q 013436 425 YD 426 (443)
Q Consensus 425 wd 426 (443)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-42 Score=291.05 Aligned_cols=278 Identities=25% Similarity=0.353 Sum_probs=225.4
Q ss_pred ccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC--
Q 013436 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-- 179 (443)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~-- 179 (443)
.+....+|......+..+..+|..-|.|++|+|||+.||+|+.||.|++||..+|+.+.. .+.+|...|++++|.|
T Consensus 135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~h 212 (480)
T KOG0271|consen 135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLH 212 (480)
T ss_pred CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccc
Confidence 444555777777777889999999999999999999999999999999999999977665 5778999999999976
Q ss_pred ---CCCeEEEEECCCeEEEEECCCCceeccccc--------eecccCceeecc-----------------CCCCceecEE
Q 013436 180 ---DQRHLVYASMSPIVHIVDVGSGTMESLANV--------TEIHDGLDFSAA-----------------DDGGYSFGIF 231 (443)
Q Consensus 180 ---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~-----------------~~~~~~~~i~ 231 (443)
..++||+++.||.|+|||+..+.+.....- .-.-+++.++.. ...||...|+
T Consensus 213 l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN 292 (480)
T KOG0271|consen 213 LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN 292 (480)
T ss_pred cCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchhee
Confidence 567999999999999999998776543221 111112221111 1246666777
Q ss_pred EEEEe-----------CCC-------------------------CEEEEEecCCeEEEEECCC-CeeeEEeeccCCCeEE
Q 013436 232 SLKFS-----------TDG-------------------------RELVAGSSDDCIYVYDLEA-NKLSLRILAHTSDVNT 274 (443)
Q Consensus 232 ~l~~~-----------~~~-------------------------~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~ 274 (443)
.++.+ |.+ ..+++|++|.++.+|+... .+++.++.+|..-|+.
T Consensus 293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~ 372 (480)
T KOG0271|consen 293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNH 372 (480)
T ss_pred eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheee
Confidence 76655 222 2477777777777777543 3467777889999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
+.|+ |++.++|+++.|..|++||.+ +++.+..|.+|-..|+.++|+.|.++|++|+.|.++++||+++
T Consensus 373 V~fS-Pd~r~IASaSFDkSVkLW~g~----tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t------- 440 (480)
T KOG0271|consen 373 VSFS-PDGRYIASASFDKSVKLWDGR----TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT------- 440 (480)
T ss_pred EEEC-CCccEEEEeecccceeeeeCC----CcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee-------
Confidence 9998 999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEE
Q 013436 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd 426 (443)
.+....+.||... +|..+|||||..+++|+.|..+++|.
T Consensus 441 ---------------------------kKl~~DLpGh~DE------Vf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 ---------------------------KKLKQDLPGHADE------VFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ---------------------------eeecccCCCCCce------EEEEEecCCCceeecCCCceEEEeec
Confidence 4556677888854 45557888999999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-42 Score=295.51 Aligned_cols=254 Identities=23% Similarity=0.292 Sum_probs=227.4
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC--CCeEEEEECCCeEEEEEC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~~dg~i~iwd~ 198 (443)
.+-+.+|..+.||+|++.||||+.+|.++||+..+...+ ..+.+|...|.++.|+|. +..+|+++.||++++|++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~---~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL---QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee---EEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 355788999999999999999999999999999987444 457899999999999997 568999999999999999
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEe
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (443)
.+......+ .+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.
T Consensus 249 ~~e~~l~~l----------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 249 SQETPLQDL----------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred CCCcchhhh----------------hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec
Confidence 886544332 2677899999999999999999999999999999999888889999999999997
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcc
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (443)
++|.++++|+.|..-+|||+| ++.++..+.+|..+|.+++|+|+|..||||+.|++++|||++.
T Consensus 313 -~DGSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~----------- 376 (459)
T KOG0272|consen 313 -PDGSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM----------- 376 (459)
T ss_pred -CCCceeeccCccchhheeecc----cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc-----------
Confidence 999999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred cccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhH
Q 013436 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~ 437 (443)
...+.++.+|...++ .+.|.|. .|.+|+|++.|++++||.-.+..++++++
T Consensus 377 -----------------------r~~ly~ipAH~nlVS--~Vk~~p~---~g~fL~TasyD~t~kiWs~~~~~~~ksLa 427 (459)
T KOG0272|consen 377 -----------------------RSELYTIPAHSNLVS--QVKYSPQ---EGYFLVTASYDNTVKIWSTRTWSPLKSLA 427 (459)
T ss_pred -----------------------cccceecccccchhh--heEeccc---CCeEEEEcccCcceeeecCCCcccchhhc
Confidence 445778888885544 3445553 79999999999999999999999888775
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-41 Score=276.73 Aligned_cols=263 Identities=20% Similarity=0.304 Sum_probs=226.5
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
.+|.+|.+.|+++.|++|.++|++++.||.+.|||.-+..+.+.+. -...-|..++|+|.++++|+|+.|+...||+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip---l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP---LPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe---cCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 6789999999999999999999999999999999998876655432 2334699999999999999999999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
+.+.+......... ...+|.+.+.++.|-+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.++.+
T Consensus 126 ls~~d~~g~~~v~r----------~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSR----------ELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred cccccccccceeee----------eecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence 98664332222221 233688899999999855 5999999999999999999999999999999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCc
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (443)
+|.+++.+++|+-|+..++||+| .+.+++.|.+|...|+++.|.|+|.-|++|+.|++.++||+|.
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R----~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa---------- 260 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVR----SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA---------- 260 (343)
T ss_pred CCCCCCeEEecccccceeeeecc----CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC----------
Confidence 86699999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred ccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
++.+..|........+..+ +||..|++|++|..|..+.+||.-.++.+..+
T Consensus 261 ------------------------D~~~a~ys~~~~~~gitSv----~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 261 ------------------------DQELAVYSHDSIICGITSV----AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred ------------------------CcEEeeeccCcccCCceeE----EEcccccEEEeeecCCceeEeeccccceEEEe
Confidence 6778888755444444444 45558999999999999999999888765443
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.1e-40 Score=304.40 Aligned_cols=260 Identities=24% Similarity=0.385 Sum_probs=229.3
Q ss_pred ecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCe--------E--------------------EE
Q 013436 109 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--------K--------------------IQ 160 (443)
Q Consensus 109 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~--------~--------------------~~ 160 (443)
..-+|.-+..++..-...++|..|++|+++||.|..|..|++|.+...+ . ..
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 3445666667777778899999999999999999999999999987310 0 01
Q ss_pred EeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC
Q 013436 161 KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (443)
Q Consensus 161 ~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 240 (443)
....+.+|.++|..+.|+|+.++|++++.|++|++|.+.+..+..... ||..+|+++.|+|.|-
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~----------------GH~~PVwdV~F~P~Gy 506 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK----------------GHLAPVWDVQFAPRGY 506 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec----------------CCCcceeeEEecCCce
Confidence 122356899999999999999999999999999999999887755443 6888999999999999
Q ss_pred EEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeE
Q 013436 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (443)
Q Consensus 241 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 320 (443)
+||+++.|++-++|......+++.+.+|.+.|.|+.|+ |+.+++++||.|.+|++||+. ++..++.|.||.++|+
T Consensus 507 YFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FH-PNs~Y~aTGSsD~tVRlWDv~----~G~~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 507 YFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFH-PNSNYVATGSSDRTVRLWDVS----TGNSVRIFTGHKGPVT 581 (707)
T ss_pred EEEecCCCceeeeeecccCCchhhhcccccccceEEEC-CcccccccCCCCceEEEEEcC----CCcEEEEecCCCCceE
Confidence 99999999999999999999999999999999999998 899999999999999999998 9999999999999999
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEE
Q 013436 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (443)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (443)
+++|+|+|++|++|+.||.|++||+.+ +..+..+.+|...+
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~----------------------------------~~~v~~l~~Ht~ti----- 622 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLAN----------------------------------GSLVKQLKGHTGTI----- 622 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcCC----------------------------------CcchhhhhcccCce-----
Confidence 999999999999999999999999999 56688888996332
Q ss_pred EecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 401 ~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
++..||.||..||+||.|+.|++||+..
T Consensus 623 -~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 623 -YSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred -eEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 3344677999999999999999999864
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=259.76 Aligned_cols=264 Identities=22% Similarity=0.321 Sum_probs=234.8
Q ss_pred cccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCC---eEEEEeeecCCccceEEEEEE
Q 013436 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG---WKIQKDILAKSLRWTVTDTSL 177 (443)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~i~~ 177 (443)
+.+...++|..+..++.+.+.-....|..++|+|.|+++|+|+.|+...||++.+. ........+.+|.+.+.++.|
T Consensus 74 SqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f 153 (343)
T KOG0286|consen 74 SQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRF 153 (343)
T ss_pred ccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEE
Confidence 45666778999999999999888999999999999999999999999999999854 123344467899999999999
Q ss_pred CCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEEC
Q 013436 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDL 256 (443)
Q Consensus 178 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~ 256 (443)
-+| ..|++++.|.++.+||+++++....+. ||.+.|.++.++| +++.+++|+.|+..++||+
T Consensus 154 ~dD-~~ilT~SGD~TCalWDie~g~~~~~f~----------------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 154 LDD-NHILTGSGDMTCALWDIETGQQTQVFH----------------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred cCC-CceEecCCCceEEEEEcccceEEEEec----------------CCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 874 568999999999999999998765544 7888999999999 9999999999999999999
Q ss_pred CCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC--CCCCeEEEEECCCCCEEEEE
Q 013436 257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~ 334 (443)
+.+.+++.|.+|.+.|++++|. |+|.-|++|++|+++++||+| ....+..+.. ...+|++++|+..|++|.+|
T Consensus 217 R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcRlyDlR----aD~~~a~ys~~~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 217 RSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCRLYDLR----ADQELAVYSHDSIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred cCcceeEeecccccccceEEEc-cCCCeeeecCCCceeEEEeec----CCcEEeeeccCcccCCceeEEEcccccEEEee
Confidence 9999999999999999999998 899999999999999999999 6667766653 34589999999999999999
Q ss_pred eCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEE
Q 013436 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (443)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 414 (443)
..|.++.+||.-. ++.+..+.||...+.+++ .+|||.-++
T Consensus 292 y~d~~c~vWDtlk----------------------------------~e~vg~L~GHeNRvScl~------~s~DG~av~ 331 (343)
T KOG0286|consen 292 YDDFTCNVWDTLK----------------------------------GERVGVLAGHENRVSCLG------VSPDGMAVA 331 (343)
T ss_pred ecCCceeEeeccc----------------------------------cceEEEeeccCCeeEEEE------ECCCCcEEE
Confidence 9999999999877 677889999998888776 567999999
Q ss_pred EeeCCCeEEEEE
Q 013436 415 TGSHDSCVYVYD 426 (443)
Q Consensus 415 tg~~dg~v~iwd 426 (443)
||+.|.+++||.
T Consensus 332 TgSWDs~lriW~ 343 (343)
T KOG0286|consen 332 TGSWDSTLRIWA 343 (343)
T ss_pred ecchhHheeecC
Confidence 999999999994
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=254.30 Aligned_cols=277 Identities=18% Similarity=0.229 Sum_probs=232.0
Q ss_pred ceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE
Q 013436 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (443)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 185 (443)
..+|+...+.+...+..-.+.|..+...||++.||+++. ..|++||+.++..- ......+|+..|+++.|..+|+.++
T Consensus 22 IRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMy 99 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMY 99 (311)
T ss_pred eeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEE
Confidence 445666667777788888899999999999999999976 67999999987442 4456778888999999999999999
Q ss_pred EEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEe
Q 013436 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (443)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 265 (443)
+|+.||+++|||++...+.+.+. |..+|+++..+|+...|++|..+|.|++||+....+...+
T Consensus 100 TgseDgt~kIWdlR~~~~qR~~~-----------------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 100 TGSEDGTVKIWDLRSLSCQRNYQ-----------------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred ecCCCceEEEEeccCcccchhcc-----------------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 99999999999999865554443 4458999999999999999999999999999988766655
Q ss_pred e-ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCC--CCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEE
Q 013436 266 L-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342 (443)
Q Consensus 266 ~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 342 (443)
. ....+|.++... ++|..++.+...|.+++|++-... ....++..+..|.+-+..+.+||++++|++++.|.+++|
T Consensus 163 iPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred CCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEE
Confidence 4 445689999997 999999999999999999986422 134567788899999999999999999999999999999
Q ss_pred EeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeE
Q 013436 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 422 (443)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v 422 (443)
|+..++- ..-..+.+|. +..|..+||.||.||+||+.|+.+
T Consensus 242 wn~~~~~---------------------------------kle~~l~gh~------rWvWdc~FS~dg~YlvTassd~~~ 282 (311)
T KOG0315|consen 242 WNTDDFF---------------------------------KLELVLTGHQ------RWVWDCAFSADGEYLVTASSDHTA 282 (311)
T ss_pred EecCCce---------------------------------eeEEEeecCC------ceEEeeeeccCccEEEecCCCCce
Confidence 9998841 2344667776 556777788899999999999999
Q ss_pred EEEEccChhhhhHhHHhhh
Q 013436 423 YVYDLVSIQILFCRQSLFK 441 (443)
Q Consensus 423 ~iwd~~~g~~~~~~~~~~~ 441 (443)
++||+..++.+...+.-.|
T Consensus 283 rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 283 RLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred eecccccCceeeecCCccc
Confidence 9999999998877665443
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-37 Score=248.94 Aligned_cols=259 Identities=17% Similarity=0.230 Sum_probs=212.2
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeE
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 193 (443)
+.....+.||...|..+..++||++.++++.|+++++||+.+++..+ .+.+|...|.+++|+||.+.+++|+.|.+|
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNRQIVSGSRDKTI 129 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCceeecCCCccee
Confidence 34466789999999999999999999999999999999999985544 466888899999999999999999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC--CCEEEEEecCCeEEEEECCCCeeeEEeeccCCC
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (443)
++|++........... .+..-|.|+.|+|+ ..+|++++.|++|++||+++-+....+.+|.+.
T Consensus 130 klwnt~g~ck~t~~~~---------------~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~ 194 (315)
T KOG0279|consen 130 KLWNTLGVCKYTIHED---------------SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY 194 (315)
T ss_pred eeeeecccEEEEEecC---------------CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccccc
Confidence 9999887654333221 12448999999997 679999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
++.++++ |+|.++++|+.||.+.+||++ .++.+..+. |...|.+++|+|+.-.|+.+. +..|+|||+.+...+
T Consensus 195 v~t~~vS-pDGslcasGgkdg~~~LwdL~----~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 195 VNTVTVS-PDGSLCASGGKDGEAMLWDLN----EGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVV 267 (315)
T ss_pred EEEEEEC-CCCCEEecCCCCceEEEEEcc----CCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhh
Confidence 9999998 999999999999999999999 778876665 778999999999876666554 556999999997666
Q ss_pred cccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
.......... ........++.+ +||+||..|++|..|+.|++|.+.
T Consensus 268 ~~l~~d~~g~---------------------------s~~~~~~~clsl----aws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELKLDGIGP---------------------------SSKAGDPICLSL----AWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhcccccccc---------------------------ccccCCcEEEEE----EEcCCCcEEEeeecCCcEEEEEee
Confidence 5543211100 001112233334 466699999999999999999875
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.7e-36 Score=241.69 Aligned_cols=215 Identities=21% Similarity=0.314 Sum_probs=188.9
Q ss_pred CCccccCCCCceEEEEECCC-CCEEEEEECCCeEEEEECCCC-eEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeE
Q 013436 116 GPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~-~~~l~~g~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 193 (443)
..+.+.+|.+.+..++|+|- |..||+|+.|+.|+||+...+ ....+.....+|+..|..++|+|.|++|++++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 34567899999999999998 899999999999999999843 2333444566899999999999999999999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC---eeeEEeeccCC
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTS 270 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~ 270 (443)
.||.-..++...+..+ +||...|.+++|+++|++||+++.|+.|.||.+..+ .+...+..|..
T Consensus 86 ~Iw~k~~~efecv~~l--------------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATL--------------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred EEeecCCCceeEEeee--------------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 9999887766554332 368889999999999999999999999999998754 57788899999
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
.|..+.|+ |...+|++++.|.+|++|+-.. .....++.++.+|...|.+++|++.|..|++++.|++++||-..
T Consensus 152 DVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 152 DVKHVIWH-PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred cccEEEEc-CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 99999998 7788999999999999998774 23678899999999999999999999999999999999999865
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-36 Score=247.04 Aligned_cols=260 Identities=20% Similarity=0.251 Sum_probs=211.4
Q ss_pred ccccCCCCceEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEE--EeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 118 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQ--KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
..+.+|++.|+.++..+.+ ..+++++.|.++.+|++....... ......+|...|..+..++||++.++++.|++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 4578999999999999974 788999999999999987542111 1234567888999999999999999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeecc--CCCe
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--TSDV 272 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v 272 (443)
+||+.+++....+. ||...|.+++|+||.+.+++|+.|.+|.+|++.... ..++..+ .+-|
T Consensus 89 lWDl~~g~~t~~f~----------------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WV 151 (315)
T KOG0279|consen 89 LWDLATGESTRRFV----------------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWV 151 (315)
T ss_pred EEEecCCcEEEEEE----------------ecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcE
Confidence 99999986655443 677899999999999999999999999999986654 3444333 7899
Q ss_pred EEEEEeCCC-CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 273 NTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 273 ~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
.|++|+|.. ..+|++++.|++|++||++ +.+....+.+|.+.++.++++|||..+++|+.||.+.+||++..
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~----~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~--- 224 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLR----NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG--- 224 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccC----CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---
Confidence 999999653 6799999999999999999 88888999999999999999999999999999999999999984
Q ss_pred cccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
+.+..+.... .+..++ |+|+.-+|+.+ .+-.|+|||+.++.
T Consensus 225 -------------------------------k~lysl~a~~---~v~sl~----fspnrywL~~a-t~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 225 -------------------------------KNLYSLEAFD---IVNSLC----FSPNRYWLCAA-TATSIKIWDLESKA 265 (315)
T ss_pred -------------------------------ceeEeccCCC---eEeeEE----ecCCceeEeec-cCCceEEEeccchh
Confidence 4444444332 233344 55555555544 45559999999999
Q ss_pred hhhHhHHhh
Q 013436 432 ILFCRQSLF 440 (443)
Q Consensus 432 ~~~~~~~~~ 440 (443)
++..+..-+
T Consensus 266 ~v~~l~~d~ 274 (315)
T KOG0279|consen 266 VVEELKLDG 274 (315)
T ss_pred hhhhccccc
Confidence 988776543
No 12
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-37 Score=245.07 Aligned_cols=260 Identities=22% Similarity=0.350 Sum_probs=230.7
Q ss_pred cccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC
Q 013436 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (443)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg 191 (443)
+|.+....+..|.++|.++.|+-||+|.++++.|.+|++|+...|..+. ...+|...|.+++.+.|+..|++++.|.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeeccccccccccccCCCCc
Confidence 4666777889999999999999999999999999999999999986666 4678888999999999999999999999
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC--eeeEEeeccC
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHT 269 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~ 269 (443)
.|.+||+++++....+. +|.+.|+.++|+.+...+++|+.|..|++||.++. ++++.+....
T Consensus 82 ~v~vwDV~TGkv~Rr~r----------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFR----------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred eEEEEEcccCeeeeecc----------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 99999999998876554 68889999999999999999999999999999765 6788888888
Q ss_pred CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
..|.++..+ +..|++|+.||+++.||+| .+.......+| +|+++.|+++++..++++.|+++++.|-.+
T Consensus 146 D~V~Si~v~---~heIvaGS~DGtvRtydiR----~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~t-- 214 (307)
T KOG0316|consen 146 DGVSSIDVA---EHEIVAGSVDGTVRTYDIR----KGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKET-- 214 (307)
T ss_pred CceeEEEec---ccEEEeeccCCcEEEEEee----cceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccch--
Confidence 899999886 6789999999999999999 77766666554 899999999999999999999999999988
Q ss_pred CccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
++.+..|+||.....-+.|++.. ....+++|++||.|++||+..
T Consensus 215 --------------------------------GklL~sYkGhkn~eykldc~l~q----sdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 215 --------------------------------GKLLKSYKGHKNMEYKLDCCLNQ----SDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred --------------------------------hHHHHHhcccccceeeeeeeecc----cceeEEeccCCceEEEEEecc
Confidence 67788999999888877777655 467899999999999999999
Q ss_pred hhhhhHhH
Q 013436 430 IQILFCRQ 437 (443)
Q Consensus 430 g~~~~~~~ 437 (443)
++++..+.
T Consensus 259 ~~~~sk~~ 266 (307)
T KOG0316|consen 259 ETQISKLS 266 (307)
T ss_pred ceeeeeec
Confidence 88775543
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.9e-37 Score=266.62 Aligned_cols=248 Identities=20% Similarity=0.338 Sum_probs=219.0
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
+..|++++|+.+|.+||+|+.||.++||+.... ....+..|+++|.++.|+.+|.+|++++.|+++.+||..+++.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 467999999999999999999999999998765 2335778999999999999999999999999999999999887
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (443)
...+.+ |..+..++.|-.+ ..|++++.|+.|+|+-+....++.++.+|.+.|.+|.|+ +.+.
T Consensus 311 ~q~f~~----------------~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~ 372 (524)
T KOG0273|consen 311 KQQFEF----------------HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGS 372 (524)
T ss_pred EEeeee----------------ccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCc
Confidence 665553 3334567888754 459999999999999999999999999999999999997 8899
Q ss_pred EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC---------CEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---------RYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
+|++++.|++++||.+. ...+...+.+|...|..+.|+|+| ..+++++.|++|++||+..
T Consensus 373 LLaS~SdD~TlkiWs~~----~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~------- 441 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMG----QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES------- 441 (524)
T ss_pred eEEEecCCCeeEeeecC----CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-------
Confidence 99999999999999998 788899999999999999999965 4689999999999999998
Q ss_pred CCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
+.++..|..|...+ ++.+|||+|+|+|+|+.||.|+||+..++++++
T Consensus 442 ---------------------------gv~i~~f~kH~~pV------ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 442 ---------------------------GVPIHTLMKHQEPV------YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred ---------------------------CceeEeeccCCCce------EEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 66788898888543 444578899999999999999999999999987
Q ss_pred HhH
Q 013436 435 CRQ 437 (443)
Q Consensus 435 ~~~ 437 (443)
+.+
T Consensus 489 s~~ 491 (524)
T KOG0273|consen 489 SYQ 491 (524)
T ss_pred eec
Confidence 764
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.1e-37 Score=250.77 Aligned_cols=262 Identities=26% Similarity=0.399 Sum_probs=222.1
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
...+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|++... ........+|.++|..+.|.+|++.+++++.|.+|+.|
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4567899999999999999999999999999999997653 22333566999999999999999999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 275 (443)
|+++++.....+ +|..-|..+.-+.-| .++.+|+.|+++++||+++..+++++ .....++++
T Consensus 118 D~~tG~~~rk~k----------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv 180 (338)
T KOG0265|consen 118 DAETGKRIRKHK----------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAV 180 (338)
T ss_pred ecccceeeehhc----------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEE
Confidence 999998766544 466678877744434 46778899999999999999888777 346689999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccC
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (443)
.|. ..+..+.+|+-|+.|++||+| .......+.||...|+.+..+|+|.++.+-+.|.++++||++...
T Consensus 181 ~f~-d~s~qv~sggIdn~ikvWd~r----~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~------ 249 (338)
T KOG0265|consen 181 GFK-DTSDQVISGGIDNDIKVWDLR----KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA------ 249 (338)
T ss_pred Eec-ccccceeeccccCceeeeccc----cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccC------
Confidence 997 778888999999999999999 889999999999999999999999999999999999999999742
Q ss_pred CcccccCcccccccCCCCCCcccCCCCeeEEEEeccc--eeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhh
Q 013436 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS--VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
|..+++..+.+|. .....+.|.|+ |++..+.+|+.|..|++||..+..++
T Consensus 250 ------------------------p~~R~v~if~g~~hnfeknlL~csws----p~~~~i~ags~dr~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 250 ------------------------PSQRCVKIFQGHIHNFEKNLLKCSWS----PNGTKITAGSADRFVYVWDTTSRRIL 301 (338)
T ss_pred ------------------------CCCceEEEeecchhhhhhhcceeecc----CCCCccccccccceEEEeecccccEE
Confidence 3356688888765 44566666655 48999999999999999999876666
Q ss_pred hHh
Q 013436 434 FCR 436 (443)
Q Consensus 434 ~~~ 436 (443)
+.+
T Consensus 302 ykl 304 (338)
T KOG0265|consen 302 YKL 304 (338)
T ss_pred EEc
Confidence 543
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.9e-36 Score=284.33 Aligned_cols=261 Identities=32% Similarity=0.488 Sum_probs=227.3
Q ss_pred cccCC-CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 119 PVDQT-TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 119 ~~~~h-~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
.+.+| ...|.|+.|+++|+++++++.++.+++|+..+.+. .......+|...|.+++|+|+++++++++.|++|+|||
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34444 88999999999999999999999999999976652 12223478889999999999999999999999999999
Q ss_pred CCCC-ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEE
Q 013436 198 VGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 198 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 276 (443)
+... ....... +|...|++++|+|+++.+++|+.|++|+|||+++++++..+.+|.+.|++++
T Consensus 232 ~~~~~~~~~~l~----------------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 232 LKDDGRNLKTLK----------------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLA 295 (456)
T ss_pred ccCCCeEEEEec----------------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEE
Confidence 9433 4433332 5888999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCc--eeeeecCCCCC--eEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcc
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEG--ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (443)
|+ +++++|++++.|+.|++||+. .+. ++..+.++... ++++.|+|++.+|++++.|+.+++||++.
T Consensus 296 f~-~d~~~l~s~s~d~~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~----- 365 (456)
T KOG0266|consen 296 FS-PDGNLLVSASYDGTIRVWDLE----TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS----- 365 (456)
T ss_pred EC-CCCCEEEEcCCCccEEEEECC----CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC-----
Confidence 96 999999999999999999998 666 56677776665 99999999999999999999999999998
Q ss_pred ccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhh
Q 013436 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~ 432 (443)
...+..+.+|... ..+.+++.+++++.++++|+.|+.|++||+.++..
T Consensus 366 -----------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 366 -----------------------------GKSVGTYTGHSNL---VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI 413 (456)
T ss_pred -----------------------------CcceeeecccCCc---ceeEecccccCCCCeEEEEeCCceEEEEeCCccch
Confidence 5667888888865 26778888899999999999999999999999888
Q ss_pred hhHhHH
Q 013436 433 LFCRQS 438 (443)
Q Consensus 433 ~~~~~~ 438 (443)
+..++.
T Consensus 414 ~~~l~~ 419 (456)
T KOG0266|consen 414 LQRLEG 419 (456)
T ss_pred hhhhcC
Confidence 776654
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=254.59 Aligned_cols=260 Identities=18% Similarity=0.250 Sum_probs=227.5
Q ss_pred CCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
+...++.+|.+.|.|+++.|-+.+|++|+.|++|+|||+.+|+... .+.+|-..|..+++|+-..||++++.|+.|+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCceEEEecCCCeeE
Confidence 3445778999999999999999999999999999999999995443 5678888999999999999999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEE
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 274 (443)
.||++.++.+.... ||-..|.+++.+|.-..|++|+.|.+++|||+++...+..+.+|..+|.+
T Consensus 219 CwDLe~nkvIR~Yh----------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~ 282 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYH----------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVAS 282 (460)
T ss_pred EEechhhhhHHHhc----------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCccee
Confidence 99999887755432 68889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
+.+.|.+ ..+++|+.|++|++||++ .++....+..|...|.+++.+|....+|+++.|. |+-|++..
T Consensus 283 V~~~~~d-pqvit~S~D~tvrlWDl~----agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~------- 349 (460)
T KOG0285|consen 283 VMCQPTD-PQVITGSHDSTVRLWDLR----AGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPE------- 349 (460)
T ss_pred EEeecCC-CceEEecCCceEEEeeec----cCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCc-------
Confidence 9997444 467899999999999999 8899999999999999999999999999998875 99999987
Q ss_pred CCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
+..+..+.+|...+..+... ...++++|+++|.+.+||..+|-...
T Consensus 350 ---------------------------g~f~~nlsgh~~iintl~~n-------sD~v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 350 ---------------------------GEFLQNLSGHNAIINTLSVN-------SDGVLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred ---------------------------cchhhccccccceeeeeeec-------cCceEEEcCCceEEEEEecCcCcccc
Confidence 55566778887655554432 34689999999999999999998777
Q ss_pred HhHHhh
Q 013436 435 CRQSLF 440 (443)
Q Consensus 435 ~~~~~~ 440 (443)
.+++.+
T Consensus 396 ~~~t~v 401 (460)
T KOG0285|consen 396 RGQTIV 401 (460)
T ss_pred cccccc
Confidence 766554
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-36 Score=251.85 Aligned_cols=261 Identities=22% Similarity=0.271 Sum_probs=231.0
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeE
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 193 (443)
...++.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++. ...+.+|...|.+|+|+..|++|++++.|=.+
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccch
Confidence 355678899999999999999999999999999999999999965 34678999999999999999999999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeE
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 273 (443)
++||..+.. .+... ..+|...|.++.|-|.|.++++++.|.+|+.|++.++-++.++.+|...|.
T Consensus 175 ~LWd~~~~~-~c~ks--------------~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr 239 (406)
T KOG0295|consen 175 KLWDFDTFF-RCIKS--------------LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR 239 (406)
T ss_pred hheeHHHHH-HHHHH--------------hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE
Confidence 999987631 11111 125667999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC---------------CCEEEEEeCCC
Q 013436 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---------------GRYLISNGKDQ 338 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~s~~~dg 338 (443)
.+..+ .+|.++++++.|.+|++|-+. +..+...+..|..+|.+++|.|. ++++++++.|+
T Consensus 240 ~v~v~-~DGti~As~s~dqtl~vW~~~----t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 240 MVRVN-QDGTIIASCSNDQTLRVWVVA----TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred EEEec-CCeeEEEecCCCceEEEEEec----cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 99997 999999999999999999998 88888999999999999999763 25899999999
Q ss_pred CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC
Q 013436 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (443)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~ 418 (443)
+|++||+.+ +.++.++.+|...+.- ..|+|.|+||+++.+
T Consensus 315 tIk~wdv~t----------------------------------g~cL~tL~ghdnwVr~------~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 315 TIKIWDVST----------------------------------GMCLFTLVGHDNWVRG------VAFSPGGKYILSCAD 354 (406)
T ss_pred eEEEEeccC----------------------------------CeEEEEEecccceeee------eEEcCCCeEEEEEec
Confidence 999999999 6789999999954433 246679999999999
Q ss_pred CCeEEEEEccChhhhhHhH
Q 013436 419 DSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 419 dg~v~iwd~~~g~~~~~~~ 437 (443)
|+++++||++++++++.++
T Consensus 355 Dktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 355 DKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred CCcEEEEEeccceeeeccC
Confidence 9999999999999887665
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.9e-37 Score=262.08 Aligned_cols=279 Identities=20% Similarity=0.277 Sum_probs=221.9
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
..+|..+.|.|+|+.|++|+..|.+.+|+... .........|..+|.++.|++++.++++|+.+|.|++|+..-...
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 56799999999999999999999999999743 333345678999999999999999999999999999999876544
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (443)
..... .|...|++++|+|+...|+++++||+|+|||....+....+.+|.-.|.++.|+ |...
T Consensus 173 k~~~a----------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P~kg 235 (464)
T KOG0284|consen 173 KIIQA----------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-PTKG 235 (464)
T ss_pred HHhhH----------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC-Cccc
Confidence 33222 244689999999999999999999999999999998888899999999999998 6777
Q ss_pred EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCc
Q 013436 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (443)
+|++|+.|..|++||.+ ++.++.++.+|...|..+.|+|++++|+++|.|..++++|+++++.+..+. ++....+
T Consensus 236 LiasgskDnlVKlWDpr----Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~ 310 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPR----SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVT 310 (464)
T ss_pred eeEEccCCceeEeecCC----CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhhe
Confidence 99999999999999999 999999999999999999999999999999999999999999766554432 1233333
Q ss_pred ccccccCCCCCCcccCCCCeeEEEEecccee-----eeeeEEEecCCccCCccEEEEeeCCCeEEEEEc
Q 013436 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVL-----RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (443)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~ 427 (443)
...|....+.........+..+.-.-++... ......+|+.+|.|=|.+|++|+.|.++++|.-
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 3334333333222222233333222221111 112245688888889999999999999999964
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-35 Score=267.69 Aligned_cols=287 Identities=18% Similarity=0.225 Sum_probs=225.0
Q ss_pred eecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE
Q 013436 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 187 (443)
+|+.....-..+..+|...+.|+++||||+++|||+.||.|+|||...+-++. +...|+..|+.+.|+..++.++++
T Consensus 334 VweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v---TFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 334 VWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV---TFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred EEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE---EeccCCCceEEEEEEecCCEEEEe
Confidence 44444444455678999999999999999999999999999999999997665 467888999999999999999999
Q ss_pred ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC-eEEEEECCCCeeeEEee
Q 013436 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRIL 266 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~ 266 (443)
+.||+|+.||+......+.+..+... ...|++..|.|..+++|+.|. .|.+|++++|+.+-.+.
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~P~p~---------------QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTSPEPI---------------QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred ecCCeEEeeeecccceeeeecCCCce---------------eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence 99999999999988776666554432 577899999999999998876 49999999999999999
Q ss_pred ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
+|.++|.+++|+ +.+..|++++.|.+|++||+-.. ...+.++ .+...+..++|+|+|+.|++++.||.|.+||+.
T Consensus 476 GHEgPVs~l~f~-~~~~~LaS~SWDkTVRiW~if~s---~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 476 GHEGPVSGLSFS-PDGSLLASGSWDKTVRIWDIFSS---SGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred CCCCcceeeEEc-cccCeEEeccccceEEEEEeecc---CceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 999999999997 88999999999999999999732 2233333 366789999999999999999999999999999
Q ss_pred CCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEE
Q 013436 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (443)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd 426 (443)
.+.+...+........... .....+-+......+ ....+||+||.+|++||..+.|++||
T Consensus 551 ~~~q~~~IdgrkD~~~gR~----------------~~D~~ta~~sa~~K~----Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 551 EAVQVGSIDGRKDLSGGRK----------------ETDRITAENSAKGKT----FTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred hceeeccccchhhcccccc----------------ccceeehhhcccCCc----eEEEEEcCCCCEEEecCCcccEEEEE
Confidence 8655433321100000000 000001111111112 23345777999999999999999999
Q ss_pred ccChhhhhHhH
Q 013436 427 LVSIQILFCRQ 437 (443)
Q Consensus 427 ~~~g~~~~~~~ 437 (443)
+.++-+++.++
T Consensus 611 v~~~vllkkfq 621 (893)
T KOG0291|consen 611 VPEGVLLKKFQ 621 (893)
T ss_pred CchhheeeeEE
Confidence 99999888765
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-36 Score=276.80 Aligned_cols=209 Identities=22% Similarity=0.349 Sum_probs=194.2
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
..+.||.++|+.+.|+|+.++|++++.|++||+|.+.+..++. ...+|..+|.++.|+|-|-++|+++.|++.++|.
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 3578999999999999999999999999999999999875444 4669999999999999999999999999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
.......+++. ||-..|.|+.|+|+..++++||.|.+|++||+.+|..++.+.+|.++|.+++|
T Consensus 522 ~d~~~PlRifa----------------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 522 TDHNKPLRIFA----------------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF 585 (707)
T ss_pred cccCCchhhhc----------------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence 88766655443 67779999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
+ ++|.+|++|+.||.|.+||+. .+..+..+.+|.+.|.++.|+.+|..||+++.|.+|++||+.....
T Consensus 586 S-p~Gr~LaSg~ed~~I~iWDl~----~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 586 S-PCGRYLASGDEDGLIKIWDLA----NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred c-CCCceEeecccCCcEEEEEcC----CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 8 899999999999999999998 8899999999999999999999999999999999999999987544
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.4e-36 Score=261.06 Aligned_cols=270 Identities=19% Similarity=0.298 Sum_probs=231.6
Q ss_pred ecccccCCCccccCCCCceEEEEECC-CCCEEEEEECCCeEEEEECCC-CeEEEEeeecCCccceEEEEEECCCCCeEEE
Q 013436 109 SRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (443)
Q Consensus 109 ~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 186 (443)
.-++|.+....+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +.++. ...+|..+|.+++|+++|..+++
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCCeeee
Confidence 45678888899999999999999999 889999999999999999987 44444 57789999999999999999999
Q ss_pred EECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEe
Q 013436 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI 265 (443)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 265 (443)
++.|+.|++||+++|++...+.... .++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~~-----------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLDK-----------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred eecceeeeeeccccceEEEEEecCC-----------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence 9999999999999999877665443 68899999988 89999999999999999999999999
Q ss_pred eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec-CCCCCeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
..|-+.|..+.|- +++..+++.++|+.++||+.+ ...++.... .+.....++..+|++.++++-+.|+.|.++.
T Consensus 339 d~hLg~i~~i~F~-~~g~rFissSDdks~riWe~~----~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 339 DRHLGAILDITFV-DEGRRFISSSDDKSVRIWENR----IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HhhhhheeeeEEc-cCCceEeeeccCccEEEEEcC----CCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 9999999999997 889999999999999999998 444433322 2334567899999999999999999999999
Q ss_pred CCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEE
Q 013436 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (443)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~i 424 (443)
+...-.. ..-..|.||......+++.|+ |||.+|++|+.||.+.+
T Consensus 414 ~~~~~r~-------------------------------nkkK~feGh~vaGys~~v~fS----pDG~~l~SGdsdG~v~~ 458 (503)
T KOG0282|consen 414 TVPPFRL-------------------------------NKKKRFEGHSVAGYSCQVDFS----PDGRTLCSGDSDGKVNF 458 (503)
T ss_pred ccccccc-------------------------------CHhhhhcceeccCceeeEEEc----CCCCeEEeecCCccEEE
Confidence 7663221 224578899888777777655 59999999999999999
Q ss_pred EEccChhhhhHhHH
Q 013436 425 YDLVSIQILFCRQS 438 (443)
Q Consensus 425 wd~~~g~~~~~~~~ 438 (443)
||.++-+++..++.
T Consensus 459 wdwkt~kl~~~lka 472 (503)
T KOG0282|consen 459 WDWKTTKLVSKLKA 472 (503)
T ss_pred eechhhhhhhcccc
Confidence 99999998877654
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=247.04 Aligned_cols=271 Identities=24% Similarity=0.342 Sum_probs=230.8
Q ss_pred eecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE
Q 013436 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 187 (443)
-...+|.+..+.+..|.+.|+-+.||++|++||+++.|.+..||++.....+.....+.+|..+|..+.||||.++|+++
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 34456778888999999999999999999999999999999999988766666666788999999999999999999999
Q ss_pred ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec
Q 013436 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 267 (443)
+.+..+.+||+.++......... +...+.+++|.|||..+++|+.|+.|..||+.... .....+
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~---------------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~g 351 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSG---------------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEG 351 (519)
T ss_pred CchHheeeccCCcchhhhhcccC---------------cCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccc
Confidence 99999999999999876554322 33479999999999999999999999999986543 334433
Q ss_pred -cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 268 -HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 268 -~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
....|.+++.. ++|+++++.+.|..|++++.. ...... +.....+|+++..+.+++++++.-.+..+++||+.
T Consensus 352 vr~~~v~dlait-~Dgk~vl~v~~d~~i~l~~~e----~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 352 VRDPKVHDLAIT-YDGKYVLLVTVDKKIRLYNRE----ARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred cccceeEEEEEc-CCCcEEEEEecccceeeechh----hhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 23568999997 889999999999999999986 333332 33455799999999999999999999999999999
Q ss_pred CCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEE
Q 013436 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (443)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd 426 (443)
. ...+..|.||.....+++.+|.-- +..++++|++|+.|+||+
T Consensus 426 e----------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~---~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 426 E----------------------------------NKLVRKYFGHKQGHFIIRSCFGGG---NDKFIASGSEDSKVYIWH 468 (519)
T ss_pred h----------------------------------hhHHHHhhcccccceEEEeccCCC---CcceEEecCCCceEEEEE
Confidence 7 455788999999899999988765 678999999999999999
Q ss_pred ccChhhhhHhH
Q 013436 427 LVSIQILFCRQ 437 (443)
Q Consensus 427 ~~~g~~~~~~~ 437 (443)
..+|+++..+.
T Consensus 469 r~sgkll~~Ls 479 (519)
T KOG0293|consen 469 RISGKLLAVLS 479 (519)
T ss_pred ccCCceeEeec
Confidence 99999987654
No 23
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-34 Score=254.32 Aligned_cols=256 Identities=21% Similarity=0.279 Sum_probs=222.8
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
+++..+...|.++.|+|...+++++-.+|.|.|||.++...+..... ..-+|.+..|-+-.+.+++|+.|..|++|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV---~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV---SEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee---cccchhhheeeeccceEEEecCCceEEEEe
Confidence 45566899999999999999999999999999999998755554333 334799999999999999999999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEeeccCCCeEEEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVC 276 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~ 276 (443)
.++++....+. .|...|.+++.+|.-.+++++|+|-.|++||.+.. .+.+++.+|...|.+++
T Consensus 84 ynt~ekV~~Fe----------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 84 YNTGEKVKTFE----------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred cccceeeEEee----------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 99987755443 47779999999999999999999999999999775 67889999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC--CCCEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
|+|.+.+.+++++-|++|++|.+. +..+..++.+|..+|+++++-+ |..+|++|+.|.+|+|||..+
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslg----s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt------- 216 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLG----SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT------- 216 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcC----CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-------
Confidence 999999999999999999999998 7888999999999999999977 447999999999999999999
Q ss_pred CCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
..+++++.||.. .+..+.|+| .-.+++||++||+|+||+-.|-++-.
T Consensus 217 ---------------------------k~CV~TLeGHt~--Nvs~v~fhp----~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 217 ---------------------------KSCVQTLEGHTN--NVSFVFFHP----ELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred ---------------------------HHHHHHhhcccc--cceEEEecC----CCcEEEEecCCccEEEecCcceehhh
Confidence 566889999984 344455666 45789999999999999988876544
Q ss_pred Hh
Q 013436 435 CR 436 (443)
Q Consensus 435 ~~ 436 (443)
++
T Consensus 264 tL 265 (794)
T KOG0276|consen 264 TL 265 (794)
T ss_pred hh
Confidence 43
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-34 Score=239.47 Aligned_cols=261 Identities=19% Similarity=0.278 Sum_probs=227.1
Q ss_pred cceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE
Q 013436 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 184 (443)
....+.+...+....+.||.+.|..++|+..|++||+++.|-.+.+||.++. ........+|.-.|.+++|-|.|.++
T Consensus 131 tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd~i 208 (406)
T KOG0295|consen 131 TIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGDHI 208 (406)
T ss_pred eEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCCee
Confidence 3345566677778889999999999999999999999999999999999873 22233466777789999999999999
Q ss_pred EEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 013436 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 264 (443)
+++++|.+|++|++.++-+...+. +|..-|..++.+.||..+++++.|.+|++|-+.++++...
T Consensus 209 lS~srD~tik~We~~tg~cv~t~~----------------~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~ 272 (406)
T KOG0295|consen 209 LSCSRDNTIKAWECDTGYCVKTFP----------------GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE 272 (406)
T ss_pred eecccccceeEEecccceeEEecc----------------CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh
Confidence 999999999999999998766554 4666899999999999999999999999999999999999
Q ss_pred eeccCCCeEEEEEeCC--------------CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCE
Q 013436 265 ILAHTSDVNTVCFGDE--------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~--------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 330 (443)
++.|.-+|.+++|.|. .+.++.+++.|++|++||+. .+.++.++.+|...|..++|+|.|+|
T Consensus 273 lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~----tg~cL~tL~ghdnwVr~~af~p~Gky 348 (406)
T KOG0295|consen 273 LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS----TGMCLFTLVGHDNWVRGVAFSPGGKY 348 (406)
T ss_pred hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc----CCeEEEEEecccceeeeeEEcCCCeE
Confidence 9999999999999742 23699999999999999998 99999999999999999999999999
Q ss_pred EEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCc
Q 013436 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (443)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 410 (443)
|+++..|+++++||+++ .++..++..|....+.+ +|..+.
T Consensus 349 i~ScaDDktlrvwdl~~----------------------------------~~cmk~~~ah~hfvt~l------Dfh~~~ 388 (406)
T KOG0295|consen 349 ILSCADDKTLRVWDLKN----------------------------------LQCMKTLEAHEHFVTSL------DFHKTA 388 (406)
T ss_pred EEEEecCCcEEEEEecc----------------------------------ceeeeccCCCcceeEEE------ecCCCC
Confidence 99999999999999999 56677777777544443 244456
Q ss_pred cEEEEeeCCCeEEEEEc
Q 013436 411 KYIYTGSHDSCVYVYDL 427 (443)
Q Consensus 411 ~~l~tg~~dg~v~iwd~ 427 (443)
.+++||+-|-.+++|.-
T Consensus 389 p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceEEeccccceeeeeec
Confidence 69999999999999964
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.8e-33 Score=239.71 Aligned_cols=250 Identities=20% Similarity=0.304 Sum_probs=215.1
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeE
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 193 (443)
+.....+..|.++|.++.|+.+|.+|++++-|+++.+||..++...+.. .-|..+-.++.|-.+ ..+++++.|+.|
T Consensus 266 G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f---~~~s~~~lDVdW~~~-~~F~ts~td~~i 341 (524)
T KOG0273|consen 266 GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF---EFHSAPALDVDWQSN-DEFATSSTDGCI 341 (524)
T ss_pred chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee---eeccCCccceEEecC-ceEeecCCCceE
Confidence 4445677899999999999999999999999999999999998655543 334445577888654 468999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeE
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 273 (443)
+++.+........+. ||.++|.++.|+|.|.+|++++.|++++||+.........+.+|...|.
T Consensus 342 ~V~kv~~~~P~~t~~----------------GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~ 405 (524)
T KOG0273|consen 342 HVCKVGEDRPVKTFI----------------GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIY 405 (524)
T ss_pred EEEEecCCCcceeee----------------cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcccee
Confidence 999998776554433 5888999999999999999999999999999999999999999999999
Q ss_pred EEEEeCC--------CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 274 TVCFGDE--------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 274 ~i~~~~~--------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
.+.|+|. .+..+++++.|++|++||+. .+.++..|..|..+|.+++|+|+|+++|+|+.||.|.+|++
T Consensus 406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~----~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE----SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred eEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc----CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 9999853 24579999999999999998 99999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEE
Q 013436 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 425 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iw 425 (443)
+. ++.++.+.+... +|..+|+.+|.+|..+-.||.+++-
T Consensus 482 ~~----------------------------------~~l~~s~~~~~~-------Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 482 KT----------------------------------GKLVKSYQGTGG-------IFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred cc----------------------------------hheeEeecCCCe-------EEEEEEcCCCCEEEEEecCCCceEE
Confidence 98 455666766542 3555566689999999999999999
Q ss_pred Ecc
Q 013436 426 DLV 428 (443)
Q Consensus 426 d~~ 428 (443)
|++
T Consensus 521 dlr 523 (524)
T KOG0273|consen 521 DLR 523 (524)
T ss_pred Eec
Confidence 975
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.3e-32 Score=237.06 Aligned_cols=277 Identities=21% Similarity=0.268 Sum_probs=215.2
Q ss_pred cccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC
Q 013436 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (443)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg 191 (443)
.|-+-...++.|..-|.|+.|+|||.++|+.+.||+|.|||=.+|+++..+.....|++.|.+++|+||++.+++++.|.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 34444456688999999999999999999999999999999999999988777789999999999999999999999999
Q ss_pred eEEEEECCCCceeccccceecccCce--------------------e-------eccCCCCceecEEEEEEeCCCCEEEE
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLD--------------------F-------SAADDGGYSFGIFSLKFSTDGRELVA 244 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~--------------------~-------~~~~~~~~~~~i~~l~~~~~~~~l~~ 244 (443)
+++|||+.++++..........++.. + ......||...|+++..+|++++|++
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS 337 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe
Confidence 99999999988766554333211110 0 11112589999999999999999999
Q ss_pred EecCCeEEEEECCCCeee-----------EEeec----------------------------------------------
Q 013436 245 GSSDDCIYVYDLEANKLS-----------LRILA---------------------------------------------- 267 (443)
Q Consensus 245 ~~~dg~i~iwd~~~~~~~-----------~~~~~---------------------------------------------- 267 (443)
|+.||.|.-||..++..- ..+..
T Consensus 338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 338 GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG 417 (603)
T ss_pred eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence 999999999998654311 00000
Q ss_pred ----------------c--------CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEE
Q 013436 268 ----------------H--------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (443)
Q Consensus 268 ----------------~--------~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 323 (443)
+ .-...+++++ +++..++.|+.|+.|+||.+.... ......+..|.++|++++
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~-~~~~~vaVGG~Dgkvhvysl~g~~--l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS-PDGSEVAVGGQDGKVHVYSLSGDE--LKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEEc-CCCCEEEEecccceEEEEEecCCc--ccceeeeecccCCceEEE
Confidence 0 0123456665 788899999999999999997321 133445667999999999
Q ss_pred ECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEec
Q 013436 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (443)
Q Consensus 324 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (443)
++||+.+||++...+.+.+||+.+... ....+.-|...+.++
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~---------------------------------~~~~w~FHtakI~~~----- 536 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREV---------------------------------KTNRWAFHTAKINCV----- 536 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCce---------------------------------ecceeeeeeeeEEEE-----
Confidence 999999999999999999999998432 123444465433332
Q ss_pred CCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 404 PVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 404 ~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
+|||+...+|||+-|-.|.||++..-
T Consensus 537 -aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 537 -AWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred -EeCCCceEEEeccccceEEEEEccCh
Confidence 46679999999999999999999754
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=218.82 Aligned_cols=209 Identities=21% Similarity=0.293 Sum_probs=181.3
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
+...+++|+..|+++.|..+|+++++|+.||+++|||+....+. ....|..+|+++..+|+...|+++..+|.|++
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q----R~~~~~spVn~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ----RNYQHNSPVNTVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc----hhccCCCCcceEEecCCcceEEeecCCCcEEE
Confidence 55678999999999999999999999999999999999874222 23456679999999999999999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC------eeeEEeeccC
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN------KLSLRILAHT 269 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~ 269 (443)
||+....+........ ...|.++...|||.+++.+...|..++|++-.. +++.+++.|.
T Consensus 151 WDl~~~~c~~~liPe~---------------~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 151 WDLGENSCTHELIPED---------------DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN 215 (311)
T ss_pred EEccCCccccccCCCC---------------CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence 9998875544332211 127999999999999999999999999998654 4566788999
Q ss_pred CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+-+..+.++ |++++|++++.|.+++||+.... .+....+.+|...+...+||.||+||++++.|+.+++||+..
T Consensus 216 ~~il~C~lS-Pd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 216 GHILRCLLS-PDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred ceEEEEEEC-CCCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 999999998 99999999999999999999832 255667889999999999999999999999999999999998
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=248.78 Aligned_cols=304 Identities=20% Similarity=0.276 Sum_probs=235.0
Q ss_pred ccCCCcccccccccceeecc----------cccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 013436 92 NYSGRGRFSAADCCHMLSRY----------LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK 161 (443)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~ 161 (443)
.++.+|++....+.+.++.+ .|-.....+.+|-..|.++.|+.|.++|++|+.|-.++||+++..+.. .
T Consensus 103 ~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-~ 181 (893)
T KOG0291|consen 103 KFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-F 181 (893)
T ss_pred EECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-c
Confidence 45788888877777665433 222223456799999999999999999999999999999999876553 3
Q ss_pred eeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceec----------------------ccc----c------
Q 013436 162 DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES----------------------LAN----V------ 209 (443)
Q Consensus 162 ~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------~~~----~------ 209 (443)
.....+|+.+|.+.-|..+...+.+.+.||.+.+|.....-... ... .
T Consensus 182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 45678999999999999999999999999999999876110000 000 0
Q ss_pred ---------eecccCceeec-------------cC---------------------------------------------
Q 013436 210 ---------TEIHDGLDFSA-------------AD--------------------------------------------- 222 (443)
Q Consensus 210 ---------~~~~~~~~~~~-------------~~--------------------------------------------- 222 (443)
...|.+..... +.
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 00000000000 00
Q ss_pred ----CCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEe
Q 013436 223 ----DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (443)
Q Consensus 223 ----~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd 298 (443)
..+|...+.+++++|||+++++|++||.|+|||.+++-|..++..|++.|+.++|+ ..++.+++.+.||+|+.||
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~-~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE-ecCCEEEEeecCCeEEeee
Confidence 04788899999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred cccC----------------------------------------CCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 013436 299 RRCL----------------------------------------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 338 (443)
Q Consensus 299 ~~~~----------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 338 (443)
+... ..+++.+..+.||+++|.+++|+|++..|++++.|.
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 7610 013566677889999999999999999999999999
Q ss_pred CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC
Q 013436 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (443)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~ 418 (443)
+|++||+-... ..+.++.-. ..+....|+|||+-|++++.
T Consensus 501 TVRiW~if~s~---------------------------------~~vEtl~i~-------sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 501 TVRIWDIFSSS---------------------------------GTVETLEIR-------SDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred eEEEEEeeccC---------------------------------ceeeeEeec-------cceeEEEEcCCCCeEEEEEe
Confidence 99999987632 112222211 12233456779999999999
Q ss_pred CCeEEEEEccChhhhhHhH
Q 013436 419 DSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 419 dg~v~iwd~~~g~~~~~~~ 437 (443)
||.|.+||...+..+..++
T Consensus 541 dgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSID 559 (893)
T ss_pred cceEEEEEhhhceeecccc
Confidence 9999999999887775544
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.9e-34 Score=238.59 Aligned_cols=264 Identities=22% Similarity=0.293 Sum_probs=215.3
Q ss_pred cceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE
Q 013436 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 184 (443)
...+|..-...+...+.||++.|.|++|. .+.|++|+.|.+|+|||+++++.+.. .-+|...|..+.|+ ..++
T Consensus 218 TikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t---lihHceaVLhlrf~--ng~m 290 (499)
T KOG0281|consen 218 TIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT---LIHHCEAVLHLRFS--NGYM 290 (499)
T ss_pred ceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH---HhhhcceeEEEEEe--CCEE
Confidence 34455555666778899999999999996 45999999999999999999977664 56788899999996 4689
Q ss_pred EEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 013436 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 264 (443)
++++.|.++.+||+.....+....+.. ||...|..+.|+ .+++++++.|.+|++|++.+.+.+.+
T Consensus 291 vtcSkDrsiaVWdm~sps~it~rrVLv-------------GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRt 355 (499)
T KOG0281|consen 291 VTCSKDRSIAVWDMASPTDITLRRVLV-------------GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRT 355 (499)
T ss_pred EEecCCceeEEEeccCchHHHHHHHHh-------------hhhhheeeeccc--cceEEEecCCceEEEEeccceeeehh
Confidence 999999999999998776443333222 577799999995 66999999999999999999999999
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
+.+|...|-|+.+. ++++++|+.|.+|++||+. .+.+++.++||+.-|.++.| |.+.+++|+.||+|+|||
T Consensus 356 l~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~----~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 356 LNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD 426 (499)
T ss_pred hhcccccceehhcc---CeEEEecCCCceEEEEecc----ccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEe
Confidence 99999999999875 7899999999999999999 99999999999999999999 567899999999999999
Q ss_pred CCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEE
Q 013436 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (443)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~i 424 (443)
+.......... ..-++..+..|... +.++. | |...+++++.|.+|.|
T Consensus 427 l~aaldpra~~-------------------------~~~Cl~~lv~hsgR--VFrLQ----F--D~fqIvsssHddtILi 473 (499)
T KOG0281|consen 427 LQAALDPRAPA-------------------------STLCLRTLVEHSGR--VFRLQ----F--DEFQIISSSHDDTILI 473 (499)
T ss_pred cccccCCcccc-------------------------cchHHHhhhhccce--eEEEe----e--cceEEEeccCCCeEEE
Confidence 98854321110 01234444555532 22333 3 6788999999999999
Q ss_pred EEccChhh
Q 013436 425 YDLVSIQI 432 (443)
Q Consensus 425 wd~~~g~~ 432 (443)
||+..+..
T Consensus 474 WdFl~~~~ 481 (499)
T KOG0281|consen 474 WDFLNGPP 481 (499)
T ss_pred EEcCCCCc
Confidence 99987653
No 30
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-33 Score=257.31 Aligned_cols=250 Identities=21% Similarity=0.255 Sum_probs=201.0
Q ss_pred cccc-CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCe------------------------------E--------
Q 013436 118 WPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------------------------------K-------- 158 (443)
Q Consensus 118 ~~~~-~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~------------------------------~-------- 158 (443)
+.+. .|.++|+++.||+||+|||+||.|+.|+||.+.... .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4455 899999999999999999999999999999876500 0
Q ss_pred -------------------EEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceee
Q 013436 159 -------------------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219 (443)
Q Consensus 159 -------------------~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 219 (443)
-..+....+|.+.|.++.||.++ +|++++.|.+|++|++...+++.++.
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~----------- 407 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS----------- 407 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-----------
Confidence 00111234888999999999754 79999999999999999999888776
Q ss_pred ccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEe
Q 013436 220 AADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (443)
Q Consensus 220 ~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd 298 (443)
|..-|+|++|+| |.++|++|+-||.|+||++...+.+.-.. -..-|++++|. |+|+..++|+.+|.+++|+
T Consensus 408 ------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~-PdGk~avIGt~~G~C~fY~ 479 (712)
T KOG0283|consen 408 ------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYS-PDGKGAVIGTFNGYCRFYD 479 (712)
T ss_pred ------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEec-cCCceEEEEEeccEEEEEE
Confidence 555899999999 88999999999999999998887665543 44789999998 7799999999999999999
Q ss_pred cccCCCCCceeeeec--CC------CCCeEEEEECCC-CCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCccccccc
Q 013436 299 RRCLNVKGKPAGVLM--GH------LEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 369 (443)
Q Consensus 299 ~~~~~~~~~~~~~~~--~~------~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (443)
.+. .+...... .| ...|+.+.|.|. ...+++.+.|..|+|+|.+.
T Consensus 480 t~~----lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~---------------------- 533 (712)
T KOG0283|consen 480 TEG----LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD---------------------- 533 (712)
T ss_pred ccC----CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc----------------------
Confidence 983 33332221 11 227999999874 33577777899999999987
Q ss_pred CCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 370 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
...+..|+|+......+...| +.||++|+++++|..|+||++..
T Consensus 534 ------------~~lv~KfKG~~n~~SQ~~Asf----s~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 534 ------------KDLVHKFKGFRNTSSQISASF----SSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ------------hhhhhhhcccccCCcceeeeE----ccCCCEEEEeecCceEEEEeCCC
Confidence 455778888776666555554 44999999999999999999743
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.1e-34 Score=240.82 Aligned_cols=234 Identities=27% Similarity=0.394 Sum_probs=202.8
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
-...|+|+++. ...+++|..|++|+|||..+-.++. .+.+|++.|.|+.| +.+.+++|+.|.+|++||+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc
Confidence 35679999986 4579999999999999998765544 47799999999998 56799999999999999999998
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe---eeEEeeccCCCeEEEEEeC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVNTVCFGD 279 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~ 279 (443)
+....- +|...|..+.|+ ..++++++.|.+|.+||+.+.. +...+.+|...|+.+.|.
T Consensus 269 ~l~tli----------------hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd- 329 (499)
T KOG0281|consen 269 PLNTLI----------------HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD- 329 (499)
T ss_pred hhhHHh----------------hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc-
Confidence 866543 466689999997 5689999999999999998764 334566999999999985
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCccc
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (443)
.+++++++.|.+|++|++. +++.++++.+|..+|.|+.+ .++++++|+.|.+|++||+..
T Consensus 330 --~kyIVsASgDRTikvW~~s----t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~------------ 389 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTS----TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC------------ 389 (499)
T ss_pred --cceEEEecCCceEEEEecc----ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc------------
Confidence 4599999999999999998 99999999999999999988 588999999999999999998
Q ss_pred ccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhh
Q 013436 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~ 432 (443)
+.++..+.||...+.+++. |.+.+++|+.||+|+|||+..+..
T Consensus 390 ----------------------G~cLRvLeGHEeLvRciRF--------d~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 390 ----------------------GACLRVLEGHEELVRCIRF--------DNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred ----------------------cHHHHHHhchHHhhhheee--------cCceeeeccccceEEEEecccccC
Confidence 6778899999987777662 688999999999999999987653
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.4e-32 Score=256.67 Aligned_cols=250 Identities=28% Similarity=0.374 Sum_probs=211.9
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECC-CCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
....+.+|...|++++|+|+++++++|+.|++|+|||+. .+..+. ...+|...|++++|+|+++++++|+.|++|+
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVR 271 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCCEEEEecCCCcEE
Confidence 455668999999999999999999999999999999994 333333 4669999999999999999999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe--eeEEeeccCCC-
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSD- 271 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~- 271 (443)
|||++++++..... +|...|.+++|++++.+|++++.|+.|++||+.++. ++..+..+...
T Consensus 272 iWd~~~~~~~~~l~----------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 272 IWDVRTGECVRKLK----------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA 335 (456)
T ss_pred EEeccCCeEEEeee----------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC
Confidence 99999987765544 577799999999999999999999999999999998 56677666555
Q ss_pred -eEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCe---EEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 272 -VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI---TFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 272 -v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+++++|+ +++.++++++.|+.+++||++ .+..+..+.+|...+ .+...++.+.++++++.|+.|++||+.+
T Consensus 336 ~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 336 PVTSVQFS-PNGKYLLSASLDRTLKLWDLR----SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred ceeEEEEC-CCCcEEEEecCCCeEEEEEcc----CCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 9999998 999999999999999999998 888899999888754 3334577899999999999999999998
Q ss_pred CCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee--CCCeEEEE
Q 013436 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HDSCVYVY 425 (443)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~--~dg~v~iw 425 (443)
...+..+.+|. ...+ ..+.++|...++++++ .|+.+++|
T Consensus 411 ----------------------------------~~~~~~l~~h~-~~~~----~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 411 ----------------------------------GGILQRLEGHS-KAAV----SDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred ----------------------------------cchhhhhcCCC-CCce----eccccCCCcCeeeecCcCCCceEEEe
Confidence 45566777784 1222 3344666799999998 79999999
Q ss_pred Ecc
Q 013436 426 DLV 428 (443)
Q Consensus 426 d~~ 428 (443)
...
T Consensus 452 ~~~ 454 (456)
T KOG0266|consen 452 KYD 454 (456)
T ss_pred cCC
Confidence 753
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.3e-31 Score=271.27 Aligned_cols=257 Identities=21% Similarity=0.364 Sum_probs=204.7
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCC----eEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCeE
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIV 193 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i 193 (443)
.+..|.+.|.+++|+|+|++||+|+.|+.|+||++... ...........+...|.+++|+|. +.+|++++.||.|
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 45669999999999999999999999999999997642 111000011122356899999874 7899999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCe
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 272 (443)
++||+.+++...... +|...|++++|+| ++.+|++|+.||.|++||++++..+..+..+ ..+
T Consensus 558 ~lWd~~~~~~~~~~~----------------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 558 QVWDVARSQLVTEMK----------------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEECCCCeEEEEec----------------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 999998876543221 4677999999997 7899999999999999999999888887654 689
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCc-eeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
.++.|+++++.+|++|+.|+.|++||++ ... ++..+.+|...|.++.|. ++.+|++++.|++|++||++.....
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~----~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLR----NPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECC----CCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 9999987889999999999999999998 433 566778999999999997 6789999999999999999763210
Q ss_pred cccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
. ....+..+.+|......+ .|+|++.+|++|+.||.|++|+.....
T Consensus 696 ~----------------------------~~~~l~~~~gh~~~i~~v------~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 696 I----------------------------NETPLHSFMGHTNVKNFV------GLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred c----------------------------CCcceEEEcCCCCCeeEE------EEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 0 124467788887543332 356689999999999999999986554
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.8e-31 Score=239.25 Aligned_cols=256 Identities=29% Similarity=0.423 Sum_probs=213.1
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
..+.+|.++|++++|+|++++|++++.||.|++|++.++.... ....|...+..+.|+|+++.|++++.+|.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 4567899999999999999999999999999999998875333 3446667789999999999999999999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
+.+++...... .|...+.++.|+|++.++++++.+|.|.+||+++++....+..|...+.+++|
T Consensus 80 ~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 80 LETGECVRTLT----------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred cCcccceEEEe----------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 98764332221 24447999999999888888888999999999989888888889999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCc
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (443)
+ +++.++++++.|+.|++||++ ..+.+..+..|...+.++.|+|+++.+++++.|+.|++||++..
T Consensus 144 ~-~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--------- 209 (289)
T cd00200 144 S-PDGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG--------- 209 (289)
T ss_pred c-CcCCEEEEEcCCCcEEEEEcc----ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---------
Confidence 8 668888888889999999998 67778888889889999999999999999999999999999872
Q ss_pred ccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhH
Q 013436 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~ 437 (443)
+.+..+..|.. .+..+ .|+|++.++++++.||.|++||+.+++.+..++
T Consensus 210 -------------------------~~~~~~~~~~~--~i~~~----~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 210 -------------------------KCLGTLRGHEN--GVNSV----AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred -------------------------ceecchhhcCC--ceEEE----EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 33445545543 22233 355578889988889999999999877765554
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-31 Score=225.36 Aligned_cols=281 Identities=20% Similarity=0.254 Sum_probs=215.9
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
....|..|..+|++++.+|+.++++||+.|..-.||++.++.... ...+|+..|+++.||.+|.+||+|..+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 356789999999999999999999999999999999999997444 57789999999999999999999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 275 (443)
|+..++....... . ....|.-+.|+|.+..|++|+.||.|.+|.+.++...+.+.+|..++++-
T Consensus 133 ~~~stg~~~~~~~--~--------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 133 FKVSTGGEQWKLD--Q--------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred EEcccCceEEEee--c--------------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 9999987654432 0 11167789999999999999999999999999988889999999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec------------------------------------------
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM------------------------------------------ 313 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------------------------------------ 313 (443)
.|. |+|+.++++..||+|++||+. ++.++..+.
T Consensus 197 ~f~-pdGKr~~tgy~dgti~~Wn~k----tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 197 EFI-PDGKRILTGYDDGTIIVWNPK----TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred ccc-CCCceEEEEecCceEEEEecC----CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 998 779999999999999999998 444443332
Q ss_pred ---------CCCCCeEEEEE---CCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCccccccc--------CCCC
Q 013436 314 ---------GHLEGITFIDS---RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD--------YPPQ 373 (443)
Q Consensus 314 ---------~~~~~v~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 373 (443)
.+...+.++.+ +..-.+.|+|+.||+|.|||+...+....+..... .-++.|+. ....
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~--V~~l~w~~t~~l~t~c~~g~ 349 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG--VTKLKWLNTDYLLTACANGK 349 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc--eEEEEEcCcchheeeccCce
Confidence 11122222332 33345677888899999999988665555443222 22222222 0111
Q ss_pred CCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
.+......++.+.+|.||...+.. . +++|++++++|+|.|++.+|+++.
T Consensus 350 v~~wDaRtG~l~~~y~GH~~~Il~--f----~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 350 VRQWDARTGQLKFTYTGHQMGILD--F----ALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEeeeccccceEEEEecCchheeE--E----EEcCCCcEEEEecCCCeEEEEecC
Confidence 223344568889999999854332 2 356699999999999999999874
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=219.98 Aligned_cols=263 Identities=18% Similarity=0.263 Sum_probs=222.4
Q ss_pred ccccceeecc-cccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC
Q 013436 102 ADCCHMLSRY-LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (443)
Q Consensus 102 ~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~ 180 (443)
.++..++|+. -..+..+++.+|.++|..+.|.+|++.|++++.|.+|+.||.++|+++.+ ...|..-|+.+.-+.-
T Consensus 67 ~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk---~k~h~~~vNs~~p~rr 143 (338)
T KOG0265|consen 67 SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK---HKGHTSFVNSLDPSRR 143 (338)
T ss_pred CcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh---hccccceeeecCcccc
Confidence 4556677774 45667789999999999999999999999999999999999999977765 5677777888874444
Q ss_pred CC-eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 013436 181 QR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (443)
Q Consensus 181 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 259 (443)
|. ++.+++.|+++++||+++...+..... +..++++.|..++..+.+|+-|+.|++||++.+
T Consensus 144 g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-----------------kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~ 206 (338)
T KOG0265|consen 144 GPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-----------------KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN 206 (338)
T ss_pred CCeEEEecCCCceEEEEeecccchhhcccc-----------------ceeEEEEEecccccceeeccccCceeeeccccC
Confidence 44 556788999999999998877665532 237999999999999999999999999999999
Q ss_pred eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCC----CeEEEEECCCCCEEEEEe
Q 013436 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE----GITFIDSRGDGRYLISNG 335 (443)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~~ 335 (443)
.....+.+|.++|+.+..+ +.+.++.+-+.|.++++||+|.......++..+.+|.. ....++|+|+++.+.+++
T Consensus 207 d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags 285 (338)
T KOG0265|consen 207 DGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS 285 (338)
T ss_pred cceEEeecccCceeeEEec-cCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc
Confidence 9999999999999999998 88999999999999999999977766677888887643 345678999999999999
Q ss_pred CCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEE
Q 013436 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (443)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~t 415 (443)
.|..+++||... ...+..+.||...+. .+. |+|...+|.+
T Consensus 286 ~dr~vyvwd~~~----------------------------------r~~lyklpGh~gsvn--~~~----Fhp~e~iils 325 (338)
T KOG0265|consen 286 ADRFVYVWDTTS----------------------------------RRILYKLPGHYGSVN--EVD----FHPTEPIILS 325 (338)
T ss_pred ccceEEEeeccc----------------------------------ccEEEEcCCcceeEE--Eee----ecCCCcEEEE
Confidence 999999999987 466888889985433 333 5557999999
Q ss_pred eeCCCeEEEE
Q 013436 416 GSHDSCVYVY 425 (443)
Q Consensus 416 g~~dg~v~iw 425 (443)
++.|.+|++=
T Consensus 326 ~~sdk~i~lg 335 (338)
T KOG0265|consen 326 CSSDKTIYLG 335 (338)
T ss_pred eccCceeEee
Confidence 9999999873
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-32 Score=254.78 Aligned_cols=260 Identities=20% Similarity=0.266 Sum_probs=222.7
Q ss_pred ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECC
Q 013436 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 199 (443)
++..+..|..++|+|...+++++-..|.|.+||..-+..+.+ ...|.++|..++|+|++.++++|+.|-.|++|+..
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r---FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR---FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh---hhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 455577899999999999999999999999999987755553 56899999999999999999999999999999999
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeC
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (443)
+.++..... ||-..|..+.|++.-.+++++|+|-+|+||+.++++++..+.+|...|.|..|+
T Consensus 82 ~rrclftL~----------------GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh- 144 (1202)
T KOG0292|consen 82 TRRCLFTLL----------------GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH- 144 (1202)
T ss_pred cceehhhhc----------------cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC-
Confidence 887754433 688899999999999999999999999999999999999999999999999998
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCC-------------------------CCceeeeecCCCCCeEEEEECCCCCEEEEE
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNV-------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 334 (443)
|...+++++|-|.+|+|||+..... ..-....+.||..+|+.++|+|.-.++++|
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 7788999999999999999862210 011234678999999999999999999999
Q ss_pred eCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEE
Q 013436 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (443)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 414 (443)
+.|..|++|.++..+ .=.+.+..||.. .+..+.|+| .+.+++
T Consensus 225 ~DDRqVKlWrmnetK--------------------------------aWEvDtcrgH~n--nVssvlfhp----~q~lIl 266 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETK--------------------------------AWEVDTCRGHYN--NVSSVLFHP----HQDLIL 266 (1202)
T ss_pred CCcceeeEEEecccc--------------------------------ceeehhhhcccC--CcceEEecC----ccceeE
Confidence 999999999987632 122456678874 444556665 789999
Q ss_pred EeeCCCeEEEEEccChhhhhHhH
Q 013436 415 TGSHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 415 tg~~dg~v~iwd~~~g~~~~~~~ 437 (443)
+.|+|++|+|||+...+.++++.
T Consensus 267 SnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ecCCCccEEEEecccccceeeee
Confidence 99999999999999988887773
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-32 Score=249.73 Aligned_cols=265 Identities=19% Similarity=0.228 Sum_probs=220.2
Q ss_pred ccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCe-EEEEeeecCCccceEEEEEECCCC-CeEEEEECC
Q 013436 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMS 190 (443)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~d 190 (443)
++..-+.+.||+..|.+++...+|.+|++|+.|.++++|.++++. .........+|...|.+++++..+ .+|+++|.|
T Consensus 354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D 433 (775)
T KOG0319|consen 354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD 433 (775)
T ss_pred CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence 333445889999999999977788999999999999999885442 222233467899999999997764 688999999
Q ss_pred CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCC
Q 013436 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (443)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 270 (443)
+++++|++...+......... .......|.-.|++++.+|+.++++|||.|++.+||++........+.+|..
T Consensus 434 ~tlK~W~l~~s~~~~~~~~~~-------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 434 CTLKLWDLPKSKETAFPIVLT-------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred ceEEEecCCCcccccccceeh-------hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 999999998732211110000 0001123666899999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
.|.++.|+ +..+.++++|.|++|+||.+. +..++.++.||...|..+.|-.++..|++++.||-|++|++.+
T Consensus 507 Gvw~V~Fs-~~dq~laT~SgD~TvKIW~is----~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt--- 578 (775)
T KOG0319|consen 507 GVWCVSFS-KNDQLLATCSGDKTVKIWSIS----TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT--- 578 (775)
T ss_pred ceEEEEec-cccceeEeccCCceEEEEEec----cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc---
Confidence 99999998 888999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred ccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
..++.++..|.... |+..-+|...+++||+.||.|.+|.=.|
T Consensus 579 -------------------------------~eC~~tlD~H~Drv------WaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 579 -------------------------------NECEMTLDAHNDRV------WALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred -------------------------------hhhhhhhhhcccee------EEEeecCccceeEecCCCeEEEEeecCc
Confidence 56688888998543 3444566788999999999999996544
No 39
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.8e-32 Score=238.70 Aligned_cols=264 Identities=18% Similarity=0.239 Sum_probs=218.2
Q ss_pred ccccceeecccc-cCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC
Q 013436 102 ADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (443)
Q Consensus 102 ~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~ 180 (443)
.+....+|+... .++.+.+.+|..+|..++|+++|..+++++.|+.|++||+++|+++....... .++++.|+|+
T Consensus 235 mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~----~~~cvkf~pd 310 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK----VPTCVKFHPD 310 (503)
T ss_pred CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC----CceeeecCCC
Confidence 344455777665 78899999999999999999999999999999999999999998887654433 4899999999
Q ss_pred C-CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 013436 181 Q-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (443)
Q Consensus 181 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 259 (443)
+ +.+++|+.|+.|+.||+++++...... .|-+.|..+.|-++|+.+++.++|+.++||+.+.+
T Consensus 311 ~~n~fl~G~sd~ki~~wDiRs~kvvqeYd----------------~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 311 NQNIFLVGGSDKKIRQWDIRSGKVVQEYD----------------RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred CCcEEEEecCCCcEEEEeccchHHHHHHH----------------hhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence 8 788999999999999999998654332 35568999999999999999999999999999888
Q ss_pred eeeEEee-ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCC--CeEEEEECCCCCEEEEEeC
Q 013436 260 KLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 260 ~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~ 336 (443)
..++... .+.-...++..+ |+++++++-+.|+.|.++.+.... .......+.+|.. --..+.|||||++|++|+.
T Consensus 375 v~ik~i~~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds 452 (503)
T KOG0282|consen 375 VPIKNIADPEMHTMPCLTLH-PNGKWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS 452 (503)
T ss_pred ccchhhcchhhccCcceecC-CCCCeehhhccCceEEEEeccccc-ccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence 6655433 333456788887 889999999999999999976332 3344456778754 3456889999999999999
Q ss_pred CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEe
Q 013436 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (443)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg 416 (443)
||.+.+||.++ ...+..++.|. ..++.+.|+|. ....+|||
T Consensus 453 dG~v~~wdwkt----------------------------------~kl~~~lkah~--~~ci~v~wHP~---e~Skvat~ 493 (503)
T KOG0282|consen 453 DGKVNFWDWKT----------------------------------TKLVSKLKAHD--QPCIGVDWHPV---EPSKVATC 493 (503)
T ss_pred CccEEEeechh----------------------------------hhhhhccccCC--cceEEEEecCC---CcceeEec
Confidence 99999999998 45677888885 56777888886 45679999
Q ss_pred eCCCeEEEEE
Q 013436 417 SHDSCVYVYD 426 (443)
Q Consensus 417 ~~dg~v~iwd 426 (443)
+.||.|++||
T Consensus 494 ~w~G~Ikiwd 503 (503)
T KOG0282|consen 494 GWDGLIKIWD 503 (503)
T ss_pred ccCceeEecC
Confidence 9999999996
No 40
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-32 Score=231.13 Aligned_cols=292 Identities=18% Similarity=0.282 Sum_probs=236.5
Q ss_pred CCCCCCccchhhhcccCC-----ccCCCccccc---ccccceeecccccCC---CccccCCCCceEEEEECCCCCEEEEE
Q 013436 74 GKRHLPVSTVKMLAGREG-----NYSGRGRFSA---ADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVAG 142 (443)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~s~~~~~l~~g 142 (443)
++.+.|..+..++..... .|+.+|++.+ .+....++...+... ..++.+|..+|..+.||||.++|+++
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 466677777777766543 3478888864 455666777766655 67889999999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccC
Q 013436 143 FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (443)
Q Consensus 143 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (443)
+.|..+.+||+.+|...... ..++...+.+++|.|||..+++|+.|+.+..||+.......-....
T Consensus 288 g~~e~~~lwDv~tgd~~~~y--~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr------------ 353 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLY--PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR------------ 353 (519)
T ss_pred CchHheeeccCCcchhhhhc--ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc------------
Confidence 99999999999999766543 2335678999999999999999999999999999876532221111
Q ss_pred CCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccC
Q 013436 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302 (443)
Q Consensus 223 ~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~ 302 (443)
...|.+++..+||+++++.+.|..|++|+.++......+ ....+|++++.+ .+++++++.-.+..+++||+.
T Consensus 354 ----~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS-~d~k~~LvnL~~qei~LWDl~-- 425 (519)
T KOG0293|consen 354 ----DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSIS-KDGKLALVNLQDQEIHLWDLE-- 425 (519)
T ss_pred ----cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEc-CCCcEEEEEcccCeeEEeecc--
Confidence 116999999999999999999999999998877655433 456789999998 999999999999999999998
Q ss_pred CCCCceeeeecCCCCCeE--EEEECC-CCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccC
Q 013436 303 NVKGKPAGVLMGHLEGIT--FIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (443)
Q Consensus 303 ~~~~~~~~~~~~~~~~v~--~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (443)
....+..+.||...-. .-+|-. +..++++|+.|+.|+||+..+
T Consensus 426 --e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-------------------------------- 471 (519)
T KOG0293|consen 426 --ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-------------------------------- 471 (519)
T ss_pred --hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC--------------------------------
Confidence 7788888999876533 233543 557899999999999999998
Q ss_pred CCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
+..+.++.||. .++..+.|+|. +-.++|+||.||+|+||...
T Consensus 472 --gkll~~LsGHs--~~vNcVswNP~---~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 472 --GKLLAVLSGHS--KTVNCVSWNPA---DPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred --CceeEeecCCc--ceeeEEecCCC---CHHHhhccCCCCeEEEecCC
Confidence 67799999999 45555678887 78899999999999999875
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.6e-31 Score=230.38 Aligned_cols=307 Identities=19% Similarity=0.249 Sum_probs=238.5
Q ss_pred CcccccccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEE
Q 013436 96 RGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 175 (443)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i 175 (443)
+.-......+.++..+-.......+.+|..+++...|||.|.|+|+|...|+|+|||......+.+. ......++|.+|
T Consensus 31 d~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn-ef~v~aG~I~Di 109 (603)
T KOG0318|consen 31 DNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN-EFQVLAGPIKDI 109 (603)
T ss_pred CeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee-eeeecccccccc
Confidence 3334455566667666666777888999999999999999999999999999999998764444332 233455689999
Q ss_pred EECCCCCeEEEEECC----CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecCCe
Q 013436 176 SLSPDQRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDC 250 (443)
Q Consensus 176 ~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~ 250 (443)
+|++|++.|++.+.. |.+.+||..+.. . +..||...|.++.|-|... .+++|++|++
T Consensus 110 ~Wd~ds~RI~avGEGrerfg~~F~~DSG~Sv--G----------------ei~GhSr~ins~~~KpsRPfRi~T~sdDn~ 171 (603)
T KOG0318|consen 110 SWDFDSKRIAAVGEGRERFGHVFLWDSGNSV--G----------------EITGHSRRINSVDFKPSRPFRIATGSDDNT 171 (603)
T ss_pred eeCCCCcEEEEEecCccceeEEEEecCCCcc--c----------------eeeccceeEeeeeccCCCceEEEeccCCCe
Confidence 999999999887643 356677754321 1 1236888999999999554 6999999999
Q ss_pred EEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec---CCCCCeEEEEECCC
Q 013436 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGD 327 (443)
Q Consensus 251 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~ 327 (443)
|.+|+=.-.+...++..|...|+++.|+ |+|.++++.+.||+|.+||-. +++.+..+. +|.+.|.+++|+||
T Consensus 172 v~ffeGPPFKFk~s~r~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGk----tge~vg~l~~~~aHkGsIfalsWsPD 246 (603)
T KOG0318|consen 172 VAFFEGPPFKFKSSFREHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGK----TGEKVGELEDSDAHKGSIFALSWSPD 246 (603)
T ss_pred EEEeeCCCeeeeecccccccceeeEEEC-CCCCeEEEecCCccEEEEcCC----CccEEEEecCCCCccccEEEEEECCC
Confidence 9999977777777888999999999998 889999999999999999998 888888888 89999999999999
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCCccccCCccc------ccCccccc-ccCCCC--CCcccCCCCeeEEEEeccceeeeee
Q 013436 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFR------SYEWDYRW-MDYPPQ--ARDLKHPCDQSVATYKGHSVLRTLI 398 (443)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (443)
+..+++++.|.+++|||+.+.+.+.....+.. ...|.-.. +..+.. ...+.......+..+.||...++.+
T Consensus 247 s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 247 STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence 99999999999999999999887766654333 11222111 111111 1222333345778889998666655
Q ss_pred EEEecCCccCCccEEEEeeCCCeEEEEEccChhh
Q 013436 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 399 ~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~ 432 (443)
. .+||+++|++|+.||.|.-||..+|..
T Consensus 327 t------v~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 327 T------VSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred E------EcCCCCEEEeeccCceEEEEecCCccc
Confidence 3 566999999999999999999988764
No 42
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-31 Score=215.95 Aligned_cols=281 Identities=18% Similarity=0.231 Sum_probs=225.4
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
|..+.||..+++.+.++.+|.+|.+++.|.++.||-..+|+.+. ...+|++.|.++....+.+.+++|+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 45678999999999999999999999999999999988887776 478999999999999999999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-----CeEEEEECC-------CCeeeEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLE-------ANKLSLR 264 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~-------~~~~~~~ 264 (443)
|+++|+......... +|..+.|+++|++++...++ +.|.++|++ ...+...
T Consensus 80 Dv~tGk~la~~k~~~-----------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 80 DVETGKQLATWKTNS-----------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred EcCCCcEEEEeecCC-----------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 999999876655433 79999999999988877653 679999998 4566788
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCC-ceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEE
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 343 (443)
+..+.+.++.+-|. +.++.|++|..||.|..||.+ ++ +.+.....|...|+.+.+++|..++++++.|.+-++|
T Consensus 143 I~t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~----~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 143 IPTPDSKITSALWG-PLGETIIAGHEDGSISIYDAR----TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV 217 (327)
T ss_pred ecCCccceeeeeec-ccCCEEEEecCCCcEEEEEcc----cCceeeechhhhccccccccccCCcceEEecccCccceee
Confidence 88889999999997 889999999999999999999 64 5566667899999999999999999999999999999
Q ss_pred eCCCCCCccccCCcccccCcccc------cccCCCCCCc---------------ccCCCCeeEEEEeccceeeeeeEEEe
Q 013436 344 DIRKMSSNASCNLGFRSYEWDYR------WMDYPPQARD---------------LKHPCDQSVATYKGHSVLRTLIRCHF 402 (443)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (443)
|+++.+.+..+....+.....+. .+.-..+.+. +.....+.+..+++|-..+.. +
T Consensus 218 D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINs--v-- 293 (327)
T KOG0643|consen 218 DVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINS--V-- 293 (327)
T ss_pred eccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcce--e--
Confidence 99998877766544332222110 0000111111 111123446677777744333 2
Q ss_pred cCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 403 SPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 403 ~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
+|+|+|+..++|++||.|++.-+.
T Consensus 294 --AfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 294 --AFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred --EECCCCcccccCCCCceEEEEEec
Confidence 466699999999999999998654
No 43
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-31 Score=215.25 Aligned_cols=246 Identities=19% Similarity=0.264 Sum_probs=202.8
Q ss_pred CCCceEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCeEEEEECCC
Q 013436 123 TTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 123 h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~iwd~~~ 200 (443)
-.+.++.++|+++. +.+++++.||+++|||+... -..+...+.|...|.++.|++. ++.+++++.|++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 36789999999965 77889999999999996443 3344567789999999999985 56778889999999999887
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeC
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (443)
+..+..++ ||...|...+|+| ..+.+++++.|+.+++||++.......+..|...|.++.|+.
T Consensus 137 ~~Sv~Tf~----------------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~k 200 (311)
T KOG0277|consen 137 PNSVQTFN----------------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSK 200 (311)
T ss_pred CcceEeec----------------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccc
Confidence 76554432 6788999999999 678999999999999999987654555889999999999998
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC-CCEEEEEeCCCCEEEEeCCCCCCccccCCcc
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (443)
-+.+.+++|+.|+.|++||+|.. ..++..+.+|.-.|..++|+|. ...|++++.|-+++|||....
T Consensus 201 y~~~vl~Tg~vd~~vr~wDir~~---r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~---------- 267 (311)
T KOG0277|consen 201 YNHNVLATGGVDNLVRGWDIRNL---RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ---------- 267 (311)
T ss_pred cCCcEEEecCCCceEEEEehhhc---cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc----------
Confidence 88999999999999999999954 4678899999999999999996 457889999999999999863
Q ss_pred cccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEc
Q 013436 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~ 427 (443)
+..+.++.-|. ..+..+.|++- ++.++|+++.|+.++||+.
T Consensus 268 -----------------------ds~~e~~~~Ht--EFv~g~Dws~~---~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 -----------------------DSAIETVDHHT--EFVCGLDWSLF---DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----------------------hhhhhhhhccc--eEEeccccccc---cCceeeecccccceeeecc
Confidence 23344555565 23444456653 6789999999999999984
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2e-31 Score=223.80 Aligned_cols=293 Identities=19% Similarity=0.244 Sum_probs=238.6
Q ss_pred CCccchhhhcccCCcc------CCCccc--ccccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEE
Q 013436 78 LPVSTVKMLAGREGNY------SGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIR 149 (443)
Q Consensus 78 ~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~ 149 (443)
.++...+++.+..... .++.-| .++++..-+|.+...+....+.||-..|..+++|+-..|+++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 4566666666654433 223333 34667777888888888999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceec
Q 013436 150 IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG 229 (443)
Q Consensus 150 iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (443)
.||++..+.+. ...+|-..|.+++.+|.-..|++|++|.++++||+++...+.... ||..+
T Consensus 219 CwDLe~nkvIR---~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~----------------GH~~~ 279 (460)
T KOG0285|consen 219 CWDLEYNKVIR---HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS----------------GHTNP 279 (460)
T ss_pred EEechhhhhHH---HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec----------------CCCCc
Confidence 99999886554 467888899999999999999999999999999999886654433 78889
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCcee
Q 013436 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 309 (443)
Q Consensus 230 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 309 (443)
|..+.+.|-...+++|+.|++|++||++.++....+..|...|.+++.+ |....||+++.| .|+-|++. .+..+
T Consensus 280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lh-P~e~~fASas~d-nik~w~~p----~g~f~ 353 (460)
T KOG0285|consen 280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLH-PKENLFASASPD-NIKQWKLP----EGEFL 353 (460)
T ss_pred ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecC-CchhhhhccCCc-cceeccCC----ccchh
Confidence 9999999977789999999999999999999999999999999999998 888899999888 68999998 88888
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEe
Q 013436 310 GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (443)
Q Consensus 310 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (443)
..+.+|..-|++++.+.|+ ++++|+.+|.|.+||.+++-.-+.. .+..
T Consensus 354 ~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~-------------------------------~t~v 401 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG-------------------------------QTIV 401 (460)
T ss_pred hccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc-------------------------------cccc
Confidence 8999999999999998776 7899999999999999985332111 1111
Q ss_pred ccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 390 GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 390 ~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
.... ...-+.+|..+|...|..|+||..|.+|.+|.-.
T Consensus 402 qpGS-l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 402 QPGS-LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred cCCc-cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 1100 0111223444566679999999999999999754
No 45
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-31 Score=240.68 Aligned_cols=264 Identities=20% Similarity=0.300 Sum_probs=220.3
Q ss_pred ccCCCccccCCCCceEEEEEC-CCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC
Q 013436 113 PVNGPWPVDQTTSRAYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (443)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s-~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg 191 (443)
..+....+-|..+.|..++|- |+.++||+++..+.+++|++.+..+. ...+|...|.++....+|-+|++|+.|.
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~----ii~GH~e~vlSL~~~~~g~llat~sKD~ 387 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ----IIPGHTEAVLSLDVWSSGDLLATGSKDK 387 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE----EEeCchhheeeeeecccCcEEEEecCCc
Confidence 334445667888999999875 67799999999999999999886443 5789999999999667788999999999
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCee-----eE--
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL-----SL-- 263 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-----~~-- 263 (443)
++++|.++.+...... . ....+|...|.+++++..+ .+|+++|.|++|++|++...+. +.
T Consensus 388 svilWr~~~~~~~~~~-~-----------a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 388 SVILWRLNNNCSKSLC-V-----------AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred eEEEEEecCCcchhhh-h-----------hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 9999999544332111 1 1123688899999998744 6899999999999999976321 11
Q ss_pred --EeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEE
Q 013436 264 --RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (443)
Q Consensus 264 --~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 341 (443)
....|...|++++++ ++..+|++||.|.+.+||++. ......++.||..+|.++.|+|..+.|+|+|.|.+|+
T Consensus 456 ~~t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIA-PNDKLIATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred hHHHHhhcccccceEec-CCCceEEecccccceeeeccc----CceEEEEeeCCccceEEEEeccccceeEeccCCceEE
Confidence 223799999999998 888999999999999999998 8899999999999999999999999999999999999
Q ss_pred EEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCe
Q 013436 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (443)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~ 421 (443)
||.+.+ ..++++|.||. ..++++.|-- +|+.|++++.||.
T Consensus 531 IW~is~----------------------------------fSClkT~eGH~--~aVlra~F~~----~~~qliS~~adGl 570 (775)
T KOG0319|consen 531 IWSIST----------------------------------FSCLKTFEGHT--SAVLRASFIR----NGKQLISAGADGL 570 (775)
T ss_pred EEEecc----------------------------------ceeeeeecCcc--ceeEeeeeee----CCcEEEeccCCCc
Confidence 999999 56689999998 4556665544 7999999999999
Q ss_pred EEEEEccChhhhhHhH
Q 013436 422 VYVYDLVSIQILFCRQ 437 (443)
Q Consensus 422 v~iwd~~~g~~~~~~~ 437 (443)
|++|++++++++.++.
T Consensus 571 iKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 571 IKLWNIKTNECEMTLD 586 (775)
T ss_pred EEEEeccchhhhhhhh
Confidence 9999999999877664
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=234.36 Aligned_cols=236 Identities=18% Similarity=0.288 Sum_probs=201.6
Q ss_pred eecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE
Q 013436 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 187 (443)
+|+-..-.-...+..|.++|.++.|+++|.++++|..+|.|++|+..-. .+. .....|...|++++|+|+...|+++
T Consensus 122 LWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk--~~~ahh~eaIRdlafSpnDskF~t~ 198 (464)
T KOG0284|consen 122 LWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK--IIQAHHAEAIRDLAFSPNDSKFLTC 198 (464)
T ss_pred EecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH--HhhHhhhhhhheeccCCCCceeEEe
Confidence 4444444445567899999999999999999999999999999997653 111 1233455789999999999999999
Q ss_pred ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec
Q 013436 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 267 (443)
+.||+|+|||....+...+.. ||...|.+++|+|.-..|++|+.|..|++||.+++.++.++..
T Consensus 199 SdDg~ikiWdf~~~kee~vL~----------------GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~ 262 (464)
T KOG0284|consen 199 SDDGTIKIWDFRMPKEERVLR----------------GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG 262 (464)
T ss_pred cCCCeEEEEeccCCchhheec----------------cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh
Confidence 999999999998776655443 6777999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC-CCCEEEEEeCCCCEEEEeCC
Q 013436 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~ 346 (443)
|+..|..+.|+ +++++|++++.|..++++|+| ..+.+..+.+|...|+++.|+| ...+|.+++.||.|..|.+.
T Consensus 263 HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR----~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 263 HKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIR----TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ccceEEEEEEc-CCCCeeEEccCCceEEEEehh----HhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 99999999998 778999999999999999999 7788899999999999999999 55688899999999999998
Q ss_pred CCCCccccCCcccccCccccc
Q 013436 347 KMSSNASCNLGFRSYEWDYRW 367 (443)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~ 367 (443)
...++......+....|+..|
T Consensus 338 ~~~p~~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 338 LEEPLGEIPPAHDGEIWSLAY 358 (464)
T ss_pred ccccccCCCcccccceeeeec
Confidence 766666666666666666544
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.3e-30 Score=228.82 Aligned_cols=258 Identities=28% Similarity=0.412 Sum_probs=213.0
Q ss_pred cceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE
Q 013436 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 184 (443)
...++..........+..|...+..+.|+|++++|++++.+|.|++|++.++..+.. ...|...+.++.|+|+++++
T Consensus 32 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~ 108 (289)
T cd00200 32 TIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT---LTGHTSYVSSVAFSPDGRIL 108 (289)
T ss_pred EEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE---EeccCCcEEEEEEcCCCCEE
Confidence 334555544555667788999999999999999999999999999999998644443 34666689999999998888
Q ss_pred EEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 013436 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 264 (443)
++++.++.|.+||+.+++...... .|...+.+++|+|++.++++++.++.|++||+++++.+..
T Consensus 109 ~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 172 (289)
T cd00200 109 SSSSRDKTIKVWDVETGKCLTTLR----------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172 (289)
T ss_pred EEecCCCeEEEEECCCcEEEEEec----------------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee
Confidence 888889999999998665443322 2445799999999999888888899999999999988888
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
+..|...+.++.|+ ++++.+++++.|+.|++||++ .++.+..+..|...+.++.|+|++.++++++.|+.|++||
T Consensus 173 ~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~ 247 (289)
T cd00200 173 LTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLS----TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD 247 (289)
T ss_pred EecCccccceEEEC-CCcCEEEEecCCCcEEEEECC----CCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 88999999999997 778888888889999999998 6778888878989999999999988888888899999999
Q ss_pred CCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEE
Q 013436 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (443)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~i 424 (443)
+.+ ...+..+..|... +..+ .|+|++++|++++.||.|++
T Consensus 248 ~~~----------------------------------~~~~~~~~~~~~~--i~~~----~~~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 248 LRT----------------------------------GECVQTLSGHTNS--VTSL----AWSPDGKRLASGSADGTIRI 287 (289)
T ss_pred cCC----------------------------------ceeEEEccccCCc--EEEE----EECCCCCEEEEecCCCeEEe
Confidence 987 3445566666532 2233 35568999999999999999
Q ss_pred EE
Q 013436 425 YD 426 (443)
Q Consensus 425 wd 426 (443)
|+
T Consensus 288 w~ 289 (289)
T cd00200 288 WD 289 (289)
T ss_pred cC
Confidence 96
No 48
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.9e-30 Score=241.66 Aligned_cols=262 Identities=18% Similarity=0.224 Sum_probs=197.7
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEE----------EeeecCCccceEEEEEECC-CCCeEEEEECCC
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ----------KDILAKSLRWTVTDTSLSP-DQRHLVYASMSP 191 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~----------~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg 191 (443)
|-..|.....++|+..+++++.+.....|+...+..+. ......+|.+.|.+++|+| ++++|++++.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 34456677777787767777777777777765543221 1123567899999999999 888999999999
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEeeccCC
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 270 (443)
+|++||+.++........ ......+|...|.+++|+|++ .+|++|+.|+.|+|||+++++.+..+..|..
T Consensus 99 tIkIWdi~~~~~~~~~~~---------~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~ 169 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISD---------PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD 169 (493)
T ss_pred EEEEEecCCCccccccCc---------ceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence 999999986532111000 001123578899999999975 6899999999999999999998889999999
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCC-eEEEEECCCCCEEEEEe----CCCCEEEEeC
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRGDGRYLISNG----KDQAIKLWDI 345 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~----~dg~i~iwd~ 345 (443)
.|.+++|+ +++.+|++++.|+.|++||++ .++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+
T Consensus 170 ~V~sla~s-pdG~lLatgs~Dg~IrIwD~r----sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 170 QITSLEWN-LDGSLLCTTSKDKKLNIIDPR----DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred ceEEEEEE-CCCCEEEEecCCCEEEEEECC----CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 99999998 789999999999999999999 77888888888765 45677999888887654 4789999999
Q ss_pred CCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee-CCCeEEE
Q 013436 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYV 424 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~-~dg~v~i 424 (443)
++... .+.....+.. .....+.|++++++|++|+ .||.|++
T Consensus 245 r~~~~---------------------------------p~~~~~~d~~-----~~~~~~~~d~d~~~L~lggkgDg~Iri 286 (493)
T PTZ00421 245 RKMAS---------------------------------PYSTVDLDQS-----SALFIPFFDEDTNLLYIGSKGEGNIRC 286 (493)
T ss_pred CCCCC---------------------------------ceeEeccCCC-----CceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence 87431 1222222211 1123345777999999887 5999999
Q ss_pred EEccChhhhhHh
Q 013436 425 YDLVSIQILFCR 436 (443)
Q Consensus 425 wd~~~g~~~~~~ 436 (443)
||+.+++++...
T Consensus 287 wdl~~~~~~~~~ 298 (493)
T PTZ00421 287 FELMNERLTFCS 298 (493)
T ss_pred EEeeCCceEEEe
Confidence 999998876543
No 49
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.6e-29 Score=209.75 Aligned_cols=258 Identities=18% Similarity=0.279 Sum_probs=209.9
Q ss_pred ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC--CCeEEEEE
Q 013436 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SPIVHIVD 197 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~--dg~i~iwd 197 (443)
+....+.|.++.|+++|.++++++.|..++|||..++..+.. ...+...|..++|......++.++. |.+|+..+
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t---i~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT---INSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE---eecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 444678899999999999999999999999999999977664 3344456888899877777777776 78999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
+.+++.++.+. ||...|.+|+.+|-+..+++++.|++|++||++..++...+..... ..++|
T Consensus 87 l~dNkylRYF~----------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~Af 148 (311)
T KOG1446|consen 87 LHDNKYLRYFP----------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAF 148 (311)
T ss_pred eecCceEEEcC----------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeE
Confidence 99999877665 7888999999999889999999999999999998888777654333 34677
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec---CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
+|.|-++|++.....|++||+|... ..+...+. +-....+.+.|+|||++|+.+...+.+++.|.-.
T Consensus 149 -Dp~GLifA~~~~~~~IkLyD~Rs~d--kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~------- 218 (311)
T KOG1446|consen 149 -DPEGLIFALANGSELIKLYDLRSFD--KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD------- 218 (311)
T ss_pred -CCCCcEEEEecCCCeEEEEEecccC--CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-------
Confidence 5899999999888899999999763 23333332 4467889999999999999999999999999888
Q ss_pred CCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
+....++.++....... -+..|+||++++++|+.||+|++|++.+|+.+.
T Consensus 219 ---------------------------G~~~~tfs~~~~~~~~~---~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 219 ---------------------------GTVKSTFSGYPNAGNLP---LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ---------------------------CcEeeeEeeccCCCCcc---eeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 45566777766443221 223467799999999999999999999999888
Q ss_pred HhHH
Q 013436 435 CRQS 438 (443)
Q Consensus 435 ~~~~ 438 (443)
.++.
T Consensus 269 ~~~~ 272 (311)
T KOG1446|consen 269 VLRG 272 (311)
T ss_pred EecC
Confidence 7765
No 50
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.7e-30 Score=208.56 Aligned_cols=247 Identities=21% Similarity=0.272 Sum_probs=193.6
Q ss_pred eEEEEECCC-CCEEEEEE-------CCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCeEEEEE
Q 013436 127 AYVSQFSAD-GSLFVAGF-------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVD 197 (443)
Q Consensus 127 v~~~~~s~~-~~~l~~g~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~iwd 197 (443)
=+++.|||- .++||++. ..|++.|.++....-+...... .-...+.+++|+++ .+.+++++.||.++|||
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 367889983 23333322 3688999999755444443332 23345999999997 46788899999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 276 (443)
+..... .+.. ...|..+|.++.|++ ++..+++++.|++|++|+...++.+.++.+|...|....
T Consensus 90 ~~~~s~-Pi~~--------------~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 90 LTMPSK-PIHK--------------FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA 154 (311)
T ss_pred cCCCCc-chhH--------------HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence 543221 1111 124777999999998 667788999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC-CCCEEEEEeCCCCEEEEeCCCCCCccccC
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (443)
|+|..++++++++.|+++++||++. .++.+. +..|...|.++.|+. +..+|+|++.|+.|++||+++.+
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~---~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r------ 224 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRS---PGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR------ 224 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecC---CCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc------
Confidence 9999999999999999999999983 455554 888999999999997 56788899999999999999954
Q ss_pred CcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
.++..+.+|... +.++.|+|. ....||+++.|-+++|||...+.
T Consensus 225 ---------------------------~pl~eL~gh~~A--VRkvk~Sph---~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 225 ---------------------------TPLFELNGHGLA--VRKVKFSPH---HASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred ---------------------------ccceeecCCceE--EEEEecCcc---hhhHhhhccccceEEecccccch
Confidence 447788888844 445556664 45789999999999999998544
No 51
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.5e-31 Score=220.59 Aligned_cols=254 Identities=19% Similarity=0.244 Sum_probs=212.1
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEe-----eecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-----ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
+..+-+-|..|||||++|++|+-||-|.+||..+|+..... ....-+..+|.|+.||.|...||+|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45677899999999999999999999999999988432211 1122356789999999999999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 276 (443)
.+.+|.+...+.. .|+.+|+++.|+.|+..+++++.|.++++.-+.+|++++.+++|.+.|+...
T Consensus 291 ri~tG~ClRrFdr---------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 291 RIETGQCLRRFDR---------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred EEecchHHHHhhh---------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence 9999988665432 3666999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC--CCCCeEEEEECC-CCCEEEEEeCCCCEEEEeCCCCCCccc
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (443)
|. ++|+.+++++.||+|++|+.. +.+++.++.. ...+|+.+-.-| +...+++|...++|.|-++..
T Consensus 356 ft-~dG~~iisaSsDgtvkvW~~K----tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------ 424 (508)
T KOG0275|consen 356 FT-DDGHHIISASSDGTVKVWHGK----TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------ 424 (508)
T ss_pred Ec-CCCCeEEEecCCccEEEecCc----chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------
Confidence 97 999999999999999999998 8888888764 445788877666 557888998999999998864
Q ss_pred cCCcccccCcccccccCCCCCCcccCCCCeeEEEEecc-ceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhh
Q 013436 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~ 432 (443)
+.++.+... ......+.++ .||.|.++++.++|+.++.+.+.+|++
T Consensus 425 -----------------------------QvVrsfsSGkREgGdFi~~~----lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 425 -----------------------------QVVRSFSSGKREGGDFINAI----LSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred -----------------------------eEEeeeccCCccCCceEEEE----ecCCCcEEEEEccCcEEEEEEeecCce
Confidence 566666533 3333444444 455899999999999999999999986
Q ss_pred hh
Q 013436 433 LF 434 (443)
Q Consensus 433 ~~ 434 (443)
-.
T Consensus 472 E~ 473 (508)
T KOG0275|consen 472 ER 473 (508)
T ss_pred ee
Confidence 44
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.6e-30 Score=220.04 Aligned_cols=271 Identities=19% Similarity=0.279 Sum_probs=212.4
Q ss_pred ccCCCccccCCCCceEEEEECCCCC---EEEEEECCCeEEEEECCCCeEEEE-eeecCCccceEEEEEECCCCCeEEEEE
Q 013436 113 PVNGPWPVDQTTSRAYVSQFSADGS---LFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYAS 188 (443)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~~~~---~l~~g~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~i~~s~~~~~l~~~~ 188 (443)
.++....+.||.++|..++|-.... .|++++.|.++++|..+.+....+ .....+|...|.++...+++..+++|+
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence 4566678899999999888875443 599999999999999887744322 223459999999999999999999999
Q ss_pred CCCeEEEEECCCCceeccccce---------ecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 013436 189 MSPIVHIVDVGSGTMESLANVT---------EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (443)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 259 (443)
.|..|.||+..+.......... ....+...+.....||..+|.++.|++ ...+++++.|.+|+.||+.++
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 9999999994432221111111 111122222333468999999999997 677999999999999999999
Q ss_pred eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC-CEEEEEeCCC
Q 013436 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQ 338 (443)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg 338 (443)
..+.++.. ...++++.++ +..++|++|+.|..|++||.|... ..-....+.+|...|.++.|+|.. .+|++++.|+
T Consensus 292 ~~~~~~~~-~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 292 GLKSTLTT-NKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred cceeeeec-CcceeEeecc-cccceeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 98888754 5679999998 688999999999999999999663 445667889999999999999965 5678999999
Q ss_pred CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC
Q 013436 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (443)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~ 418 (443)
++++||+|+.+ .++..+.+|.. .++.+.|. ++.+|++||.
T Consensus 369 t~klWDvRS~k---------------------------------~plydI~~h~D--Kvl~vdW~-----~~~~IvSGGa 408 (423)
T KOG0313|consen 369 TVKLWDVRSTK---------------------------------APLYDIAGHND--KVLSVDWN-----EGGLIVSGGA 408 (423)
T ss_pred eEEEEEeccCC---------------------------------CcceeeccCCc--eEEEEecc-----CCceEEeccC
Confidence 99999999843 25777788863 34444443 5789999999
Q ss_pred CCeEEEEEc
Q 013436 419 DSCVYVYDL 427 (443)
Q Consensus 419 dg~v~iwd~ 427 (443)
|.+|+|+.-
T Consensus 409 D~~l~i~~~ 417 (423)
T KOG0313|consen 409 DNKLRIFKG 417 (423)
T ss_pred cceEEEecc
Confidence 999999864
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=9.1e-31 Score=215.92 Aligned_cols=286 Identities=22% Similarity=0.256 Sum_probs=212.5
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCC------------e---EEEEeeecCCccceEEEEEECCCCC
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG------------W---KIQKDILAKSLRWTVTDTSLSPDQR 182 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~------------~---~~~~~~~~~~~~~~v~~i~~s~~~~ 182 (443)
.-+..|.+++.+.+|||||.++|+|+.|..|+|.|++.- . .-..+..+..|..+|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 456789999999999999999999999999999998721 0 0012335667888999999999999
Q ss_pred eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeee
Q 013436 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 262 (443)
.|++++.|++|++||+........+.... ...+|.++.|+|.|.+|++|.....+++||+++.++.
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~q--------------d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQ--------------DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF 251 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhh--------------ccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence 99999999999999998655443333222 1228999999999999999999999999999998876
Q ss_pred EEee---ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec-CCC-CCeEEEEECCCCCEEEEEeCC
Q 013436 263 LRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHL-EGITFIDSRGDGRYLISNGKD 337 (443)
Q Consensus 263 ~~~~---~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~s~~~d 337 (443)
..-. .|.+.|+++.++ +.+++.++++.||.|++||-- +.+++.++. .|. ..|.+..|..+++++++++.|
T Consensus 252 vsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGV----S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGV----SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred eecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccc----cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence 5543 689999999998 899999999999999999987 888888875 454 468899999999999999999
Q ss_pred CCEEEEeCCCCCCccccCCcccccCccc----------ccccCCCCCCcccCC----CCeeEE-EEeccceeeeeeEEEe
Q 013436 338 QAIKLWDIRKMSSNASCNLGFRSYEWDY----------RWMDYPPQARDLKHP----CDQSVA-TYKGHSVLRTLIRCHF 402 (443)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~ 402 (443)
..+++|.+.+++.+...........-.. .++.++.....-.+. ....+. .--+|......+
T Consensus 327 S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i---- 402 (430)
T KOG0640|consen 327 STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI---- 402 (430)
T ss_pred ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE----
Confidence 9999999999888776543211111111 111122111111000 001111 112444322221
Q ss_pred cCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 403 SPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 403 ~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
.-||.+.-++||+.|-.+++|--.
T Consensus 403 --~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 403 --VHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred --EeCCCCCceeeecccceeeeeeec
Confidence 245578899999999999999643
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.3e-29 Score=254.97 Aligned_cols=254 Identities=19% Similarity=0.230 Sum_probs=197.7
Q ss_pred CCCceEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC-CCCeEEEEECCCeEEEEECCC
Q 013436 123 TTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 123 h~~~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~ 200 (443)
+...|.+++|++ ++.+|++++.||+|+|||+.++..+. ...+|...|++++|+| ++.+|++|+.|+.|++||+.+
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC
Confidence 456899999987 47899999999999999999885554 3567888999999997 788999999999999999988
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEe-CCCCEEEEEecCCeEEEEECCCCe-eeEEeeccCCCeEEEEEe
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFG 278 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~ 278 (443)
+....... +...|.++.|+ +++.+|++|+.||.|++||+++.+ .+..+.+|...|.++.|.
T Consensus 608 ~~~~~~~~-----------------~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 608 GVSIGTIK-----------------TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV 670 (793)
T ss_pred CcEEEEEe-----------------cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe
Confidence 76543322 11268899995 478999999999999999998765 466778999999999995
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCC--CCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCC
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLN--VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (443)
++.+|++++.|+.|++||++... ....++..+.+|...+.+++|+|++.+|++|+.|+.|++|+............
T Consensus 671 --~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 --DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred --CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 56789999999999999997321 12356788999999999999999999999999999999999876432211100
Q ss_pred cccccCcccccccCCCCCCcccCCCCeeEE--EEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEc
Q 013436 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVA--TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~ 427 (443)
.. ...+. ....+. .. +.+.+|+|++..|++|+.||.|+||++
T Consensus 749 ~~-----------------------~~~~~~~~~~~~~--~~----V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 749 KT-----------------------IDPVSGLEVDDAS--QF----ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cc-----------------------CCcccccccCCCC--cE----EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 00 00000 011121 12 233446668999999999999999997
No 55
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.7e-30 Score=208.18 Aligned_cols=256 Identities=16% Similarity=0.277 Sum_probs=212.7
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCeEEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIV 196 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~iw 196 (443)
+.+++|...|.+++|+.+|..|++|+.|+++.+|+++.+ ...+.....+|...|..++|+|. ...|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 567889999999999999999999999999999999987 34444567788888999999985 5789999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 276 (443)
|++.+++........ +=.-+.|+|+|+++++++.|..|.+.|.++.+.+... .....++.++
T Consensus 93 d~r~~k~~~~i~~~~-----------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~ 154 (313)
T KOG1407|consen 93 DIRSGKCTARIETKG-----------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEIS 154 (313)
T ss_pred EeccCcEEEEeeccC-----------------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeee
Confidence 999998765544322 2334789999999999999999999999998876655 3456788999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCC
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (443)
|+ .++++++.....|.|.|.... .-+++..+..|.....||.|+|+|++||+|+.|-.+.+||+...-+
T Consensus 155 w~-~~nd~Fflt~GlG~v~ILsyp----sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC------ 223 (313)
T KOG1407|consen 155 WN-NSNDLFFLTNGLGCVEILSYP----SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC------ 223 (313)
T ss_pred ec-CCCCEEEEecCCceEEEEecc----ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh------
Confidence 98 778888877788999999987 7899999999999999999999999999999999999999988433
Q ss_pred cccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
++.+..+.-.+. .+ .||-||++||+|++|..|-|=++.+|..+..+
T Consensus 224 ----------------------------~R~isRldwpVR--Tl----SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 224 ----------------------------ERCISRLDWPVR--TL----SFSHDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred ----------------------------heeeccccCceE--EE----EeccCcceeeccCccceEEeEecccCCeEEEe
Confidence 333333332222 22 25569999999999999999999999887665
Q ss_pred H
Q 013436 437 Q 437 (443)
Q Consensus 437 ~ 437 (443)
+
T Consensus 270 ~ 270 (313)
T KOG1407|consen 270 P 270 (313)
T ss_pred e
Confidence 4
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.2e-30 Score=229.81 Aligned_cols=228 Identities=18% Similarity=0.266 Sum_probs=200.0
Q ss_pred ceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE
Q 013436 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (443)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 185 (443)
..+|++-.......++-..-+|.+..|-+..+++++|+.|..|+||+..+++++.. ...|...|.+++.+|...+++
T Consensus 37 V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~---FeAH~DyIR~iavHPt~P~vL 113 (794)
T KOG0276|consen 37 VQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT---FEAHSDYIRSIAVHPTLPYVL 113 (794)
T ss_pred eEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE---eeccccceeeeeecCCCCeEE
Confidence 44666666666677777888999999999999999999999999999999977764 678888999999999999999
Q ss_pred EEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEE
Q 013436 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 264 (443)
+++.|-.|++||.+..=. ... ...||..-|.+++|+| |.+.+++++-|++|+||.+.+..+..+
T Consensus 114 tsSDDm~iKlW~we~~wa-~~q--------------tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT 178 (794)
T KOG0276|consen 114 TSSDDMTIKLWDWENEWA-CEQ--------------TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT 178 (794)
T ss_pred ecCCccEEEEeeccCcee-eee--------------EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee
Confidence 999999999999976421 111 1236888999999999 778999999999999999999999999
Q ss_pred eeccCCCeEEEEEeCC-CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEE
Q 013436 265 ILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 343 (443)
+.+|...|+|++|-+. +..+|++|++|.+|+|||.. +..|++++.||...|..+.|+|.-..+++|+.||+|+||
T Consensus 179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ----tk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriW 254 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ----TKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIW 254 (794)
T ss_pred eeccccCcceEEeccCCCcceEEecCCCceEEEeecc----hHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEe
Confidence 9999999999999632 34599999999999999998 899999999999999999999999999999999999999
Q ss_pred eCCCCCCccccC
Q 013436 344 DIRKMSSNASCN 355 (443)
Q Consensus 344 d~~~~~~~~~~~ 355 (443)
+..+.+.....+
T Consensus 255 hs~Ty~lE~tLn 266 (794)
T KOG0276|consen 255 NSKTYKLEKTLN 266 (794)
T ss_pred cCcceehhhhhh
Confidence 998876655443
No 57
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=203.37 Aligned_cols=216 Identities=20% Similarity=0.223 Sum_probs=181.5
Q ss_pred EeeecCCccceEEEEEECCC-CCeEEEEECCCeEEEEECCCCce-eccccceecccCceeeccCCCCceecEEEEEEeCC
Q 013436 161 KDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238 (443)
Q Consensus 161 ~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 238 (443)
......+|.+.+..++|+|- |..||+++.|..|++|+...+.. ..... -+.+|+..|.+++|+|.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~v-------------ld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTV-------------LDDGHKRSVRSVAWSPH 72 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEe-------------ccccchheeeeeeecCC
Confidence 34456788889999999998 88999999999999999985322 21111 12368889999999999
Q ss_pred CCEEEEEecCCeEEEEECCCC--eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC
Q 013436 239 GRELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (443)
Q Consensus 239 ~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 316 (443)
|++|++++.|.++.||.-..+ +++..+.+|...|.+++|+ .+|++||+++.|..|-||.+.... ..+++..++.|.
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~Ht 150 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEHT 150 (312)
T ss_pred CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeecccc
Confidence 999999999999999986644 7888999999999999998 999999999999999999997433 668899999999
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeee
Q 013436 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (443)
..|..+.|+|...+|++++.|++|++|+-.... .-.+++++.+|.. +
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-------------------------------dW~c~~tl~g~~~--T 197 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-------------------------------DWECVQTLDGHEN--T 197 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecCCC-------------------------------CeeEEEEecCccc--e
Confidence 999999999999999999999999999866310 1356888999884 3
Q ss_pred eeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 397 ~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
+|+.+|++.|..|++++.|++|+||...
T Consensus 198 ----VW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 198 ----VWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ----EEEEEecCCCceEEEecCCcceEeeeec
Confidence 4556677789999999999999999854
No 58
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-29 Score=226.61 Aligned_cols=262 Identities=19% Similarity=0.234 Sum_probs=216.7
Q ss_pred ccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCC-ccceEEEEEECCCCC
Q 013436 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQR 182 (443)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~i~~s~~~~ 182 (443)
.+..+|......-......+...|+++.|+++|++||+|..+|.|.|||..+.+.+.. ... |...|-+++|+ +.
T Consensus 197 ~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~---~~~~h~~rvg~laW~--~~ 271 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT---LRGSHASRVGSLAWN--SS 271 (484)
T ss_pred ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc---ccCCcCceeEEEecc--Cc
Confidence 3455565555443444444589999999999999999999999999999988755543 334 88899999998 66
Q ss_pred eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeee
Q 013436 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 262 (443)
.+.+|+.++.|..+|++..+.... . ..+|...|..++|++|+.++|+|+.|+.+.|||.....++
T Consensus 272 ~lssGsr~~~I~~~dvR~~~~~~~-~--------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQHVVS-T--------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred eEEEecCCCcEEEEEEecchhhhh-h--------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 789999999999999987764332 1 1257889999999999999999999999999999888999
Q ss_pred EEeeccCCCeEEEEEeCCCCCEEEEee--CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe--CCC
Q 013436 263 LRILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQ 338 (443)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg 338 (443)
..+..|...|.+++|+|-...+||+|+ .|+.|++||.. .+..+..+. -...|..|.|++..+-|+++. .++
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~----~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN----TGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC----CCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 999999999999999999999999975 79999999998 788887765 457899999999887676543 478
Q ss_pred CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC
Q 013436 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (443)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~ 418 (443)
.|.||+..++ ..+..+.+|... ++.+ ++||||..+++|+.
T Consensus 412 ~i~lw~~ps~----------------------------------~~~~~l~gH~~R--Vl~l----a~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 412 QITLWKYPSM----------------------------------KLVAELLGHTSR--VLYL----ALSPDGETIVTGAA 451 (484)
T ss_pred cEEEEecccc----------------------------------ceeeeecCCcce--eEEE----EECCCCCEEEEecc
Confidence 8999999883 457788899854 3333 36669999999999
Q ss_pred CCeEEEEEccCh
Q 013436 419 DSCVYVYDLVSI 430 (443)
Q Consensus 419 dg~v~iwd~~~g 430 (443)
|.++++|++-..
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999999764
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.6e-29 Score=236.25 Aligned_cols=256 Identities=24% Similarity=0.286 Sum_probs=216.8
Q ss_pred eecccccCCCcc-ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE
Q 013436 108 LSRYLPVNGPWP-VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (443)
Q Consensus 108 ~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 186 (443)
.+.......... +.+|.+.|+++++..-+.+|++|+.|.++++||..+|.+... ..+|...|.++... ...+++
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~---l~gh~stv~~~~~~--~~~~~s 306 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS---LQGHTSSVRCLTID--PFLLVS 306 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE---ecCCCceEEEEEcc--CceEee
Confidence 445555555555 899999999999998889999999999999999999987774 56888899988774 456888
Q ss_pred EECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee
Q 013436 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (443)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 266 (443)
|+.|.+|++|++.++....+.. +|..+|.++..+ +.++++|+.|++|.+||+.+++++..+.
T Consensus 307 gs~D~tVkVW~v~n~~~l~l~~----------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLNLLR----------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred ccCCceEEEEeccCcceEEEec----------------cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec
Confidence 9999999999999888766554 477799999997 8899999999999999999999999999
Q ss_pred ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCC-ceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
+|...|+++.+. .. ..+++|+.|++|++||++ .. +++..+.+|..-+..+.+ .+++|++++.|++|++||.
T Consensus 369 gH~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~----~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 369 GHTGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLR----TKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred CCcceEEEEEec-Cc-ceEEeeeeccceEeecCC----chhhhhhhhcCCccccccccc--ccceeEeccccccEEEeec
Confidence 999999999885 33 889999999999999998 67 899999999998877766 5779999999999999999
Q ss_pred CCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEec-cceeeeeeEEEecCCccCCccEEEEeeCCCeEEE
Q 013436 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~i 424 (443)
.+ ++++.++.+ |...+..+. + ....+++++.||.+.+
T Consensus 441 ~~----------------------------------~~~~~~~~~~~~~~v~~l~--~------~~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 441 EE----------------------------------GECLRTLEGRHVGGVSALA--L------GKEEILCSSDDGSVKL 478 (537)
T ss_pred cc----------------------------------CceeeeeccCCcccEEEee--c------CcceEEEEecCCeeEE
Confidence 98 566777777 333333322 1 1367999999999999
Q ss_pred EEccChhhhhHh
Q 013436 425 YDLVSIQILFCR 436 (443)
Q Consensus 425 wd~~~g~~~~~~ 436 (443)
||+.+++.+..+
T Consensus 479 ~dl~~~~~~~~l 490 (537)
T KOG0274|consen 479 WDLRSGTLIRTL 490 (537)
T ss_pred EecccCchhhhh
Confidence 999999988755
No 60
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.1e-31 Score=225.27 Aligned_cols=269 Identities=20% Similarity=0.277 Sum_probs=223.0
Q ss_pred cceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE
Q 013436 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 184 (443)
.+++...+|......++.|.+.|..+.|-++...|++|+.|..|++|++..++ ......+.+..++|+++.|.++++++
T Consensus 156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceE
Confidence 56677788999999999999999999999999999999999999999998764 33334566777789999999999999
Q ss_pred EEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 013436 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 264 (443)
++++.|+.+++|++...+...... ||+..|+++.|......+++|+.|.+|++||+....+.++
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLs----------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLS----------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhc----------------ccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence 999999999999999887655443 6888999999998777799999999999999999888777
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
.. ..+.++.|+.+ ...+++|-.|++|++||.+ ...+......+. .|+++..++++..|.+++.|.++.+.|
T Consensus 299 ~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~R----s~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viD 369 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIR----SADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVID 369 (459)
T ss_pred cc-ccccccceEec---ceeeeecccccceEEEecc----CCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeee
Confidence 63 35567777775 5578899999999999999 778888877664 999999999999999999999999999
Q ss_pred CCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccc--eeeeeeEEEecCCccCCccEEEEeeCCCeE
Q 013436 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS--VLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 422 (443)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v 422 (443)
+++.. ....|.... ......++ .||||+.|+++||.||.|
T Consensus 370 lRt~e----------------------------------I~~~~sA~g~k~asDwtrv----vfSpd~~YvaAGS~dgsv 411 (459)
T KOG0288|consen 370 LRTKE----------------------------------IRQTFSAEGFKCASDWTRV----VFSPDGSYVAAGSADGSV 411 (459)
T ss_pred ccccc----------------------------------EEEEeecccccccccccee----EECCCCceeeeccCCCcE
Confidence 99843 233333221 11112233 367799999999999999
Q ss_pred EEEEccChhhhhHhH
Q 013436 423 YVYDLVSIQILFCRQ 437 (443)
Q Consensus 423 ~iwd~~~g~~~~~~~ 437 (443)
+||++.+|++-+.++
T Consensus 412 ~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 412 YIWSVFTGKLEKVLS 426 (459)
T ss_pred EEEEccCceEEEEec
Confidence 999999999876554
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-29 Score=234.42 Aligned_cols=290 Identities=18% Similarity=0.213 Sum_probs=224.5
Q ss_pred ceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE
Q 013436 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (443)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 185 (443)
.-+|.+........++.|.++|..++|+|++.++++|+.|-.|+||+..+.+++. .+.+|-..|..+.|++.-.+++
T Consensus 33 IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyPWIl 109 (1202)
T KOG0292|consen 33 IQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYPWIL 109 (1202)
T ss_pred eeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCceEE
Confidence 3367777888888999999999999999999999999999999999999876655 5778999999999999999999
Q ss_pred EEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe-----
Q 013436 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----- 260 (443)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~----- 260 (443)
++|.|.+|+||+..+++++.+.+ ||...|.|.+|+|....++++|-|-+|+|||+..-+
T Consensus 110 SASDDQTIrIWNwqsr~~iavlt----------------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 110 SASDDQTIRIWNWQSRKCIAVLT----------------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred EccCCCeEEEEeccCCceEEEEe----------------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCC
Confidence 99999999999999999877665 788899999999999999999999999999984210
Q ss_pred ------------------------eeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC
Q 013436 261 ------------------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (443)
Q Consensus 261 ------------------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 316 (443)
....+.+|...|+-++|+ +.-.+|++|++|..|++|.+..- ..-.+.+..+|.
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~DDRqVKlWrmnet--KaWEvDtcrgH~ 250 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNET--KAWEVDTCRGHY 250 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-CCcceEEecCCcceeeEEEeccc--cceeehhhhccc
Confidence 123456899999999998 66779999999999999998622 122345677999
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeee
Q 013436 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (443)
..|.++-|+|...++++.+.|++|+|||+...+.+..+.... -.+-.++..|....+....+.-+..|+-...
T Consensus 251 nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren----dRFW~laahP~lNLfAAgHDsGm~VFkleRE--- 323 (1202)
T KOG0292|consen 251 NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN----DRFWILAAHPELNLFAAGHDSGMIVFKLERE--- 323 (1202)
T ss_pred CCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC----CeEEEEEecCCcceeeeecCCceEEEEEccc---
Confidence 999999999999999999999999999999977766553211 1122233344444444444433334433221
Q ss_pred eeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 397 ~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
+.++.. .++.|+-.- |..|+.+|+.+.+
T Consensus 324 --rpa~~v----~~n~LfYvk-d~~i~~~d~~t~~ 351 (1202)
T KOG0292|consen 324 --RPAYAV----NGNGLFYVK-DRFIRSYDLRTQK 351 (1202)
T ss_pred --CceEEE----cCCEEEEEc-cceEEeeeccccc
Confidence 111211 234444443 8888888888743
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=6.3e-30 Score=224.41 Aligned_cols=282 Identities=18% Similarity=0.290 Sum_probs=209.4
Q ss_pred cccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeE----EEEeeecCCccceEEEEEECCCCCeEE
Q 013436 110 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQRHLV 185 (443)
Q Consensus 110 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~i~~s~~~~~l~ 185 (443)
..+|....-.+.+|+..|.++++.|.|-.|++|+.|-+|++||+..... ...+..... ..|.++.|++.+..|+
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~Tg~~iL 230 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSVTGDQIL 230 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccc--cccceeeecCCCCeEE
Confidence 3456667778899999999999999999999999999999999975421 122222333 3699999999999999
Q ss_pred EEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCee-eE
Q 013436 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL-SL 263 (443)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~ 263 (443)
+.+.....+|+|-...+......-.. +........||...++|.+|+|+. ..|++++.||+++|||+...+. +.
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~KGDQ----YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSKGDQ----YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred EEecCcceeEEccCCceeeeeeccch----hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 99999999999977665543332221 111223456899999999999955 5799999999999999976542 22
Q ss_pred Eee-----ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCC--CeEEEEECCCCCEEEEEeC
Q 013436 264 RIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 264 ~~~-----~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~ 336 (443)
.+. +..-++++++|+ +++++||+|+.||.|.+|+.+... .......-.+|.. .|++|+|+++|++|++-+.
T Consensus 307 Vik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred EEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhccC
Confidence 222 334578999997 899999999999999999986432 1222334456776 8999999999999999999
Q ss_pred CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEe
Q 013436 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (443)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg 416 (443)
|+++++||++.++. ++..+.+-...-....| +|||+.++|+||
T Consensus 385 D~tLKvWDLrq~kk---------------------------------pL~~~tgL~t~~~~tdc----~FSPd~kli~TG 427 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKK---------------------------------PLNVRTGLPTPFPGTDC----CFSPDDKLILTG 427 (641)
T ss_pred CCceeeeecccccc---------------------------------chhhhcCCCccCCCCcc----ccCCCceEEEec
Confidence 99999999998643 23333332222222223 477799999998
Q ss_pred eC------CCeEEEEEccChhhhhHh
Q 013436 417 SH------DSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 417 ~~------dg~v~iwd~~~g~~~~~~ 436 (443)
+. .|.+++||..+-+.++.+
T Consensus 428 tS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 428 TSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred ccccCCCCCceEEEEeccceeeEEEe
Confidence 64 578999998877665543
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=5.7e-29 Score=210.63 Aligned_cols=255 Identities=21% Similarity=0.265 Sum_probs=206.9
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC---CeEEEEECCCeEEEEE
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ---RHLVYASMSPIVHIVD 197 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~---~~l~~~~~dg~i~iwd 197 (443)
-.|.+-|.++... +++|++|+.||.+++||.... ... ...+|.++|.+++|.... ..|++++.|.++++|.
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 4688889999888 789999999999999998854 333 467899999988885433 3599999999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC--------------------
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-------------------- 257 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~-------------------- 257 (443)
++.++........ -.||...|.++...++|..+++|+.|..|.||+..
T Consensus 176 ~~~~~~~~~~~~~------------~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~ 243 (423)
T KOG0313|consen 176 WNVGENKVKALKV------------CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR 243 (423)
T ss_pred ecCchhhhhHHhH------------hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence 9887653322211 12688999999999999999999999999999932
Q ss_pred -----CCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEE
Q 013436 258 -----ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 332 (443)
Q Consensus 258 -----~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 332 (443)
++.++..+.+|..+|.++.|+ + ...+++++.|.+|+.||+. .+..+..+.+ ...+++++.+|..++|+
T Consensus 244 ~~~~~~r~P~vtl~GHt~~Vs~V~w~-d-~~v~yS~SwDHTIk~WDle----tg~~~~~~~~-~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 244 EKEGGTRTPLVTLEGHTEPVSSVVWS-D-ATVIYSVSWDHTIKVWDLE----TGGLKSTLTT-NKSLNCISYSPLSKLLA 316 (423)
T ss_pred hhcccccCceEEecccccceeeEEEc-C-CCceEeecccceEEEEEee----cccceeeeec-CcceeEeecccccceee
Confidence 123566778999999999996 3 6789999999999999998 7777777764 46899999999999999
Q ss_pred EEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccE
Q 013436 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (443)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 412 (443)
+|+.|..|++||.|++.. .-....|.+|.. .+..+.|+|. +...
T Consensus 317 ~gssdr~irl~DPR~~~g-------------------------------s~v~~s~~gH~n--wVssvkwsp~---~~~~ 360 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGDG-------------------------------SVVSQSLIGHKN--WVSSVKWSPT---NEFQ 360 (423)
T ss_pred ecCCCCceeecCCCCCCC-------------------------------ceeEEeeecchh--hhhheecCCC---CceE
Confidence 999999999999998532 223567889986 4445567776 6778
Q ss_pred EEEeeCCCeEEEEEccChh-hhhHh
Q 013436 413 IYTGSHDSCVYVYDLVSIQ-ILFCR 436 (443)
Q Consensus 413 l~tg~~dg~v~iwd~~~g~-~~~~~ 436 (443)
|++|+.||++++||+++.+ .++.+
T Consensus 361 ~~S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 361 LVSGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred EEEEecCCeEEEEEeccCCCcceee
Confidence 9999999999999999876 55544
No 64
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.2e-28 Score=228.75 Aligned_cols=213 Identities=16% Similarity=0.154 Sum_probs=168.9
Q ss_pred ccccCCCCceEEEEECC-CCCEEEEEECCCeEEEEECCCCeEE----EEeeecCCccceEEEEEECCCC-CeEEEEECCC
Q 013436 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSP 191 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg 191 (443)
..+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++... .....+.+|...|.+++|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999765211 1223467889999999999985 6899999999
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCC
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (443)
.|+|||+.+++...... +|...|.+++|+|++.+|++++.|+.|++||+++++.+..+..|.+.
T Consensus 149 tVrIWDl~tg~~~~~l~----------------~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIK----------------CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred EEEEEECCCCeEEEEEc----------------CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 99999999876543221 35568999999999999999999999999999999988888888765
Q ss_pred e-EEEEEeCCCCCEEEEee----CCCeEEEEecccCCCCCceeeeecC-CCCCeEEEEECCCCCEEEEEeC-CCCEEEEe
Q 013436 272 V-NTVCFGDESGHLIYSGS----DDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGK-DQAIKLWD 344 (443)
Q Consensus 272 v-~~i~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd 344 (443)
+ ..+.|. +++..+++++ .|+.|++||++.. ..++..... +...+....|++++.+|++++. |+.|++||
T Consensus 213 ~~~~~~w~-~~~~~ivt~G~s~s~Dr~VklWDlr~~---~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 213 KSQRCLWA-KRKDLIITLGCSKSQQRQIMLWDTRKM---ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFE 288 (493)
T ss_pred cceEEEEc-CCCCeEEEEecCCCCCCeEEEEeCCCC---CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence 4 466787 4555555543 4789999999832 233333332 3345666779999999998874 99999999
Q ss_pred CCCCCC
Q 013436 345 IRKMSS 350 (443)
Q Consensus 345 ~~~~~~ 350 (443)
+++...
T Consensus 289 l~~~~~ 294 (493)
T PTZ00421 289 LMNERL 294 (493)
T ss_pred eeCCce
Confidence 998553
No 65
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.6e-29 Score=217.76 Aligned_cols=270 Identities=17% Similarity=0.262 Sum_probs=208.3
Q ss_pred cCCCCceEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEE-------eeecCCccceEEEEEECCC-CCeEEEEECCC
Q 013436 121 DQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQK-------DILAKSLRWTVTDTSLSPD-QRHLVYASMSP 191 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg 191 (443)
..|.+.|+.+.+-|.. .++|+++..+.|.|||..+...... ...+.+|...-++++|++. .-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 5689999999999976 5667778889999999876422222 1245677777888999986 45789999999
Q ss_pred eEEEEECCCCceec-cccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECC--CCeeeEEeec
Q 013436 192 IVHIVDVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE--ANKLSLRILA 267 (443)
Q Consensus 192 ~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~ 267 (443)
.|++||+....... ..... ....+|...|..++|++ +...|++++.|+.+.|||++ +.++.....+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~----------~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPK----------TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred cEEEEeccccccCCccccce----------EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 99999998765421 11111 11236888999999999 55688999999999999999 5666677789
Q ss_pred cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC-CCEEEEEeCCCCEEEEeCC
Q 013436 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~ 346 (443)
|...|+|++|+|.++.+||+|+.|++|.+||+|.+. .++..+.+|...|.+|.|+|+ ...||+++.|+.+.|||+.
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~---~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN---KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc---cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 999999999999999999999999999999999653 588999999999999999996 4678899999999999998
Q ss_pred CCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEE
Q 013436 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (443)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd 426 (443)
......... ...-..-+.+..-.||... +....|+|. .--.|++.++|+.+.||+
T Consensus 348 ~ig~eq~~e--------------------da~dgppEllF~HgGH~~k--V~DfsWnp~---ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 348 RIGEEQSPE--------------------DAEDGPPELLFIHGGHTAK--VSDFSWNPN---EPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ccccccChh--------------------hhccCCcceeEEecCcccc--cccccCCCC---CCeEEEEecCCceEEEee
Confidence 743322100 0001113456777888843 444456664 455688999999999999
Q ss_pred cc
Q 013436 427 LV 428 (443)
Q Consensus 427 ~~ 428 (443)
+.
T Consensus 403 ~s 404 (422)
T KOG0264|consen 403 MA 404 (422)
T ss_pred cc
Confidence 86
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=3.9e-29 Score=235.10 Aligned_cols=250 Identities=23% Similarity=0.316 Sum_probs=216.0
Q ss_pred ccccC-CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 118 WPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 118 ~~~~~-h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
..+.+ +...+.|..|. ..++++++.+++|++||..++..+.. .+.+|.+.|.++++..-+.+|++|+.|.++++|
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 33443 67788999998 66899999999999999999865543 378999999999998778899999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 276 (443)
|..++++..... +|...|.++... ...+++|+.|.+|++|+++++.++..+.+|..+|+++.
T Consensus 277 d~~sg~C~~~l~----------------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 277 DCSTGECTHSLQ----------------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred ecCCCcEEEEec----------------CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 999999877665 577788888774 55688899999999999999999999989999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCC
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (443)
.+ +.++++|+.|++|++||++ .++++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++..
T Consensus 339 ~~---~~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~------- 403 (537)
T KOG0274|consen 339 LD---EPLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR------- 403 (537)
T ss_pred ec---CCEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-------
Confidence 85 7799999999999999999 99999999999999999988765 899999999999999999931
Q ss_pred cccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
+++.++.+|......+. ..+++|++++.||.|++||..++++++.+
T Consensus 404 --------------------------~c~~tl~~h~~~v~~l~--------~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 404 --------------------------KCIHTLQGHTSLVSSLL--------LRDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred --------------------------hhhhhhcCCcccccccc--------cccceeEeccccccEEEeecccCceeeee
Confidence 45778888886553322 25789999999999999999999998877
Q ss_pred HH
Q 013436 437 QS 438 (443)
Q Consensus 437 ~~ 438 (443)
+.
T Consensus 450 ~~ 451 (537)
T KOG0274|consen 450 EG 451 (537)
T ss_pred cc
Confidence 65
No 67
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=5.5e-28 Score=228.09 Aligned_cols=236 Identities=17% Similarity=0.211 Sum_probs=177.2
Q ss_pred EECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCeEEEEECCCCceeccccceecccCceeec
Q 013436 142 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (443)
Q Consensus 142 g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (443)
|+.++.|++|+...... .....+|..+|.+++|+|+ +.+|++|+.|+.|+|||+.++..... .... ..
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~-------p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKD-------PQ 118 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-cccc-------ce
Confidence 55678899999876533 3356789999999999997 78999999999999999986432100 0000 00
Q ss_pred cCCCCceecEEEEEEeCCCCE-EEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEec
Q 013436 221 ADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299 (443)
Q Consensus 221 ~~~~~~~~~i~~l~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~ 299 (443)
....+|...|.+++|+|++.. |++++.|+.|+|||+++++.+..+. |...|.+++|+ +++.+|++++.|+.|+|||+
T Consensus 119 ~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 119 CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC-CCCCEEEEEecCCEEEEEEC
Confidence 012357779999999998875 5788999999999999998777764 66789999998 88999999999999999999
Q ss_pred ccCCCCCceeeeecCCCCCeEEE-----EECCCCCEEEEEeCCC----CEEEEeCCCCCCccccCCcccccCcccccccC
Q 013436 300 RCLNVKGKPAGVLMGHLEGITFI-----DSRGDGRYLISNGKDQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 370 (443)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (443)
+ .+..+..+.+|.+.+... .|++++.+|++++.|+ .|+|||+++..
T Consensus 197 R----sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~--------------------- 251 (568)
T PTZ00420 197 R----KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT--------------------- 251 (568)
T ss_pred C----CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC---------------------
Confidence 9 788888899998765433 3568899999988774 79999999632
Q ss_pred CCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 371 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
..+..+..+.. ...+...|. +++|.++++|+.|+.|++|++..+.
T Consensus 252 ------------~pl~~~~ld~~-~~~L~p~~D---~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 252 ------------SALVTMSIDNA-SAPLIPHYD---ESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred ------------CceEEEEecCC-ccceEEeee---CCCCCEEEEEECCCeEEEEEccCCc
Confidence 22333322221 122222232 2368999999999999999998764
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6e-29 Score=227.47 Aligned_cols=267 Identities=18% Similarity=0.264 Sum_probs=220.8
Q ss_pred ccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCe
Q 013436 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183 (443)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 183 (443)
....+|..-..++.+++.- +-+.|..|-|.++++++|...|.+.+||+.....+. ....|.+.|..++.+||++.
T Consensus 394 ~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E---ti~AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE---TIRAHDGAIWSISLSPDNKG 468 (888)
T ss_pred CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh---hhhccccceeeeeecCCCCc
Confidence 4444555555555555543 378899999999999999999999999998875444 34589999999999999999
Q ss_pred EEEEECCCeEEEEECCCCce-----eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCC
Q 013436 184 LVYASMSPIVHIVDVGSGTM-----ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (443)
Q Consensus 184 l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 258 (443)
+++|+.|.+|++||..--.. .....+. ....+ .-...|.|+.+||||++|+++--|.+|+||-+.+
T Consensus 469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~---~~rtL------el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt 539 (888)
T KOG0306|consen 469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK---HTRTL------ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT 539 (888)
T ss_pred eEEecCCcEEEEEeEEEEeccCcccceeeeec---cceEE------eccccEEEEEEcCCCcEEEEEeccCeEEEEEecc
Confidence 99999999999999752111 1111100 00000 1223799999999999999999999999999999
Q ss_pred CeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 013436 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 338 (443)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 338 (443)
-+....+.+|.-||.||..+ ++++++++|+.|.+|++|-+. -|.|-..+.+|...|.++.|-|....+.+++.|+
T Consensus 540 lKFflsLYGHkLPV~smDIS-~DSklivTgSADKnVKiWGLd----FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 540 LKFFLSLYGHKLPVLSMDIS-PDSKLIVTGSADKNVKIWGLD----FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG 614 (888)
T ss_pred eeeeeeecccccceeEEecc-CCcCeEEeccCCCceEEeccc----cchhhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence 99999999999999999998 899999999999999999998 8899999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC
Q 013436 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (443)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~ 418 (443)
.|+-||-.+ -..++.+.+|.....+ .+.+|+|.++++++.
T Consensus 615 kvKqWDg~k----------------------------------Fe~iq~L~~H~~ev~c------Lav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 615 KVKQWDGEK----------------------------------FEEIQKLDGHHSEVWC------LAVSPNGSFVVSSSH 654 (888)
T ss_pred eEEeechhh----------------------------------hhhheeeccchheeee------eEEcCCCCeEEeccC
Confidence 999999988 4568889999855444 446779999999999
Q ss_pred CCeEEEEEccC
Q 013436 419 DSCVYVYDLVS 429 (443)
Q Consensus 419 dg~v~iwd~~~ 429 (443)
|..|++|....
T Consensus 655 D~sIRlwE~td 665 (888)
T KOG0306|consen 655 DKSIRLWERTD 665 (888)
T ss_pred CceeEeeeccC
Confidence 99999998654
No 69
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=6.8e-30 Score=204.64 Aligned_cols=260 Identities=12% Similarity=0.197 Sum_probs=215.4
Q ss_pred ceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE
Q 013436 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (443)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 185 (443)
.+++.--.+...-.+.+|.++|+...++.+....|+++.|=+-+|||.-+|..+.. -.|..-|.+++|+.|.++|+
T Consensus 41 pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs----f~hkhivk~~af~~ds~~ll 116 (334)
T KOG0278|consen 41 PMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS----FEHKHIVKAVAFSQDSNYLL 116 (334)
T ss_pred chhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh----hhhhheeeeEEecccchhhh
Confidence 33444455566778999999999999999999999999999999999999866653 34566799999999999999
Q ss_pred EEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEe
Q 013436 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (443)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 265 (443)
+|+.+..++|||++..+... .+..+|.+.|..+.|....+.|++++.|++|++||.++++.++++
T Consensus 117 tgg~ekllrvfdln~p~App---------------~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL 181 (334)
T KOG0278|consen 117 TGGQEKLLRVFDLNRPKAPP---------------KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL 181 (334)
T ss_pred ccchHHHhhhhhccCCCCCc---------------hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE
Confidence 99999999999998764321 123468889999999998889999999999999999999999988
Q ss_pred eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
. .+.+|+++.++ ++|++|.+ ...+.|.+||.. +...+..+.- ...|.+.+++|+...+++|+.|..++.||.
T Consensus 182 ~-~~s~VtSlEvs-~dG~ilTi-a~gssV~Fwdak----sf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 182 E-FNSPVTSLEVS-QDGRILTI-AYGSSVKFWDAK----SFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred e-cCCCCcceeec-cCCCEEEE-ecCceeEEeccc----cccceeeccC-ccccccccccCCCceEEecCcceEEEEEec
Confidence 4 57789999998 88887755 456789999998 6666666653 357889999999999999999999999999
Q ss_pred CCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEE-eccceeeeeeEEEecCCccCCccEEEEeeCCCeEEE
Q 013436 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~i 424 (443)
.+ +..+..+ ++|...+.++ .|||||...++|++||+|++
T Consensus 254 ~T----------------------------------geEi~~~nkgh~gpVhcV------rFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 254 NT----------------------------------GEEIGSYNKGHFGPVHCV------RFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred cC----------------------------------CceeeecccCCCCceEEE------EECCCCceeeccCCCceEEE
Confidence 99 5556665 7777544443 47789999999999999999
Q ss_pred EEccChhh
Q 013436 425 YDLVSIQI 432 (443)
Q Consensus 425 wd~~~g~~ 432 (443)
|....++.
T Consensus 294 WQt~~~~~ 301 (334)
T KOG0278|consen 294 WQTTPGKT 301 (334)
T ss_pred EEecCCCc
Confidence 99887664
No 70
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.2e-29 Score=197.45 Aligned_cols=212 Identities=22% Similarity=0.328 Sum_probs=187.7
Q ss_pred ecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEE
Q 013436 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (443)
Q Consensus 164 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 243 (443)
.+..++++|.++.|+-||++.++++.|.+|++|+...+.++.... +|...|.+++.+.|+..|+
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs----------------ghG~EVlD~~~s~Dnskf~ 75 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS----------------GHGHEVLDAALSSDNSKFA 75 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec----------------CCCceeeeccccccccccc
Confidence 456788899999999999999999999999999999888766544 5777999999999999999
Q ss_pred EEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEE
Q 013436 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (443)
Q Consensus 244 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 323 (443)
+|+.|..|.+||+++|+.++++.+|...|+.+.|+ .+...+++|+.|.++++||.|.. ..++++.+......|.++.
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~--s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSR--SFEPIQILDEAKDGVSSID 152 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecccccceeeEEEec-CcceEEEeccccceeEEEEcccC--CCCccchhhhhcCceeEEE
Confidence 99999999999999999999999999999999998 88889999999999999999865 5688888888889999999
Q ss_pred ECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEec
Q 013436 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (443)
Q Consensus 324 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (443)
.. +..+++|+.||+++.||+|. ++....+-+|. ++ +
T Consensus 153 v~--~heIvaGS~DGtvRtydiR~----------------------------------G~l~sDy~g~p--it------~ 188 (307)
T KOG0316|consen 153 VA--EHEIVAGSVDGTVRTYDIRK----------------------------------GTLSSDYFGHP--IT------S 188 (307)
T ss_pred ec--ccEEEeeccCCcEEEEEeec----------------------------------ceeehhhcCCc--ce------e
Confidence 85 56799999999999999999 45556666665 22 3
Q ss_pred CCccCCccEEEEeeCCCeEEEEEccChhhhhHhHH
Q 013436 404 PVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQS 438 (443)
Q Consensus 404 ~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~~ 438 (443)
..||+|++..+.++-|++|++-|-.+|+++...+.
T Consensus 189 vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 189 VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred EEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 34777999999999999999999999999987654
No 71
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=1.2e-28 Score=202.09 Aligned_cols=289 Identities=16% Similarity=0.219 Sum_probs=216.8
Q ss_pred CCccccCCCCceEEEEECC-CCCEEEEEECCCeEEEEECCCCe------------EEEEeeecCCccceEEEEEECC-CC
Q 013436 116 GPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSP-DQ 181 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~i~~s~-~~ 181 (443)
..-..+.|.+.|+++...+ .|+++++|+.||.|.+||++... ++.......+|+..|..+.|-| |.
T Consensus 35 d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 35 DKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred CcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 3345678999999999998 58999999999999999997642 1112223457888999999999 55
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC---CCCEEEEEecCCeEEEEECCC
Q 013436 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEA 258 (443)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~---~~~~l~~~~~dg~i~iwd~~~ 258 (443)
..+.+++.|.++++||.++-+....++..+ .|.+-+++| ...++++|..+-.|++.|+.+
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~~F~me~-----------------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAVDFKMEG-----------------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred ceeecccccceEEEeecccceeeEEeecCc-----------------eeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence 678889999999999999987766665443 677888888 356889999999999999999
Q ss_pred CeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC--------C---CceeeeecCCCCCeEEEEECCC
Q 013436 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------K---GKPAGVLMGHLEGITFIDSRGD 327 (443)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~---~~~~~~~~~~~~~v~~~~~~~~ 327 (443)
|.....+.+|.+.|.++.|+|...-.|++|+.||.|++||+|.... + ...+..-..|.+.|+.++|+.+
T Consensus 178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd 257 (397)
T KOG4283|consen 178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD 257 (397)
T ss_pred CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence 9999999999999999999988888999999999999999984310 0 1112223468889999999999
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCCccccCC-----c-----ccccCcccccc---cCCCCCCcccCCCCeeEEEEecccee
Q 013436 328 GRYLISNGKDQAIKLWDIRKMSSNASCNL-----G-----FRSYEWDYRWM---DYPPQARDLKHPCDQSVATYKGHSVL 394 (443)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (443)
+.++++++.|..+++|+..+++....-.. . ..........+ ........+....+..+..+.+| .
T Consensus 258 ~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--~ 335 (397)
T KOG4283|consen 258 ARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--L 335 (397)
T ss_pred chhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc--c
Confidence 99999999999999999988764322110 0 00011111111 11212223344567778888888 3
Q ss_pred eeeeEEEecCCccCCccEEEEeeCCCeEEEEEc
Q 013436 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (443)
Q Consensus 395 ~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~ 427 (443)
..+..+.+.+ +=+...+|..|+.|+.|-.
T Consensus 336 k~i~c~~~~~----~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 336 KRINCAAYRP----DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceeeEEeecC----chhhhhccccCCccccccc
Confidence 5555555555 5567899999999999976
No 72
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-29 Score=200.54 Aligned_cols=256 Identities=17% Similarity=0.146 Sum_probs=203.6
Q ss_pred ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC--CCCeEEEEECCCeEEEEE
Q 013436 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~iwd 197 (443)
-.+|.+.|..+...--|++|||++.|++|+|+.+..+........+.+|.++|..++|.. -|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 367899999999999999999999999999999988766566678899999999999965 699999999999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC--CCEEEEEecCCeEEEEECCCC---eeeEEeeccCCCe
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSDV 272 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v 272 (443)
-.+++....... ..|...|++++|.|. |-.|++++.||.|.|.+.+.. ...+....|.-.|
T Consensus 87 e~~g~w~k~~e~--------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 87 EENGRWTKAYEH--------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred cCCCchhhhhhh--------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 988865443322 247789999999994 568999999999999988765 2233455899999
Q ss_pred EEEEEeCCC--C-----------CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC----CEEEEEe
Q 013436 273 NTVCFGDES--G-----------HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----RYLISNG 335 (443)
Q Consensus 273 ~~i~~~~~~--~-----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~s~~ 335 (443)
++++|.|.. | +.|++|+.|..|+||+.... +......+.+|...|..++|.|.- .+|++++
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999998652 2 56999999999999999743 334455689999999999999963 5799999
Q ss_pred CCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEE
Q 013436 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (443)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~t 415 (443)
.||++.||-.+........ ..+.. ....+|+..||+.|++|+.
T Consensus 231 qDg~viIwt~~~e~e~wk~----------------------------tll~~---------f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWKK----------------------------TLLEE---------FPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred CCCcEEEEEecCccCcccc----------------------------ccccc---------CCcceEEEEEeccccEEEE
Confidence 9999999987742211111 11111 1234566677778999999
Q ss_pred eeCCCeEEEEEcc
Q 013436 416 GSHDSCVYVYDLV 428 (443)
Q Consensus 416 g~~dg~v~iwd~~ 428 (443)
++.|+.|.+|.-.
T Consensus 274 s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 274 SGGDNKVTLWKEN 286 (299)
T ss_pred ecCCcEEEEEEeC
Confidence 9999999999743
No 73
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.1e-30 Score=215.25 Aligned_cols=277 Identities=19% Similarity=0.243 Sum_probs=206.6
Q ss_pred eecccccCCCccccCCCCceEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE
Q 013436 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 186 (443)
+.+.+...-.-.+.||.+.|.|++=+|.. ..+++|+.||.|+|||+....++. ....|.+.|..|++.. ..+++
T Consensus 50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~~~~t 124 (433)
T KOG0268|consen 50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--TSFFT 124 (433)
T ss_pred HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--cceEE
Confidence 34444444455679999999999999987 889999999999999999865544 4667888999999976 67899
Q ss_pred EECCCeEEEEECCCCceeccccceecccCce-------eecc----------------CCCCceecEEEEEEeCCC-CEE
Q 013436 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLD-------FSAA----------------DDGGYSFGIFSLKFSTDG-REL 242 (443)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~~~----------------~~~~~~~~i~~l~~~~~~-~~l 242 (443)
++.|.+|+.|.++.... ..+-......++. |... ...--...|.++.|+|-. ..|
T Consensus 125 vgdDKtvK~wk~~~~p~-~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL 203 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDGPPL-HTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL 203 (433)
T ss_pred ecCCcceeeeeccCCcc-eeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence 99999999998765311 1110000000100 0000 001112357888899844 567
Q ss_pred EEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEE
Q 013436 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (443)
Q Consensus 243 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 322 (443)
+++..|+.|.+||++++++++.+. ....-+.|+|+| .+..|++|+.|..++.||+|. -..++....+|...|.++
T Consensus 204 as~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~---l~~p~~v~~dhvsAV~dV 278 (433)
T KOG0268|consen 204 ASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRN---LSRPLNVHKDHVSAVMDV 278 (433)
T ss_pred eeeccCCceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhh---hcccchhhcccceeEEEe
Confidence 777799999999999999887763 345568999995 888899999999999999995 347788899999999999
Q ss_pred EECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEe
Q 013436 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (443)
Q Consensus 323 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (443)
+|+|.|+-+++||.|.+|+||..+.+... ..|.... ++-+|
T Consensus 279 dfsptG~EfvsgsyDksIRIf~~~~~~SR----------------------------------diYhtkR-----Mq~V~ 319 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKSIRIFPVNHGHSR----------------------------------DIYHTKR-----MQHVF 319 (433)
T ss_pred ccCCCcchhccccccceEEEeecCCCcch----------------------------------hhhhHhh-----hheee
Confidence 99999999999999999999999874321 1221111 12234
Q ss_pred cCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 403 ~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
+..||.|.+|+++||.|+.|++|...-.+.+.
T Consensus 320 ~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 320 CVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred EEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 55566699999999999999999987655443
No 74
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.3e-27 Score=223.95 Aligned_cols=214 Identities=14% Similarity=0.139 Sum_probs=165.3
Q ss_pred CCCccccCCCCceEEEEECCC-CCEEEEEECCCeEEEEECCCCeE-EE----EeeecCCccceEEEEEECCCCCe-EEEE
Q 013436 115 NGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK-IQ----KDILAKSLRWTVTDTSLSPDQRH-LVYA 187 (443)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~-~~~l~~g~~d~~i~iwd~~~~~~-~~----~~~~~~~~~~~v~~i~~s~~~~~-l~~~ 187 (443)
.....+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. .. ......+|...|.+++|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 345678899999999999997 78999999999999999976422 11 11235678889999999999875 4689
Q ss_pred ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec
Q 013436 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 267 (443)
+.|+.|+|||+.+++...... |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~-----------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQIN-----------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEe-----------------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 999999999999886533221 123799999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEeC----CCCCEEEEeeCCC----eEEEEecccCCCCCceeeeec--CCCCCeEEEEECCCCCEEEEEeCC
Q 013436 268 HTSDVNTVCFGD----ESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKD 337 (443)
Q Consensus 268 ~~~~v~~i~~~~----~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d 337 (443)
|.+.+.+..+.. +++.+|++++.|+ .|+|||++.. ..++..+. .+.+.+......+++.++++|+.|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~---~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT---TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC---CCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 988765443321 5677888877664 7999999832 34444433 333344444445568899999999
Q ss_pred CCEEEEeCCCC
Q 013436 338 QAIKLWDIRKM 348 (443)
Q Consensus 338 g~i~iwd~~~~ 348 (443)
+.|++|++...
T Consensus 285 ~tIr~~e~~~~ 295 (568)
T PTZ00420 285 GNCRYYQHSLG 295 (568)
T ss_pred CeEEEEEccCC
Confidence 99999999764
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.3e-29 Score=215.94 Aligned_cols=255 Identities=21% Similarity=0.276 Sum_probs=201.4
Q ss_pred CccccCCCCceEEEEECCCCCE-EEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~-l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
...+..-.+.|.+++|||...+ +|+.+. -.+.||+..+...... .......|.++.|-.||++|++|...|.|+|
T Consensus 19 ~~~~~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~---~srFk~~v~s~~fR~DG~LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 19 FPPVHKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT---FSRFKDVVYSVDFRSDGRLLAAGDESGHVKV 94 (487)
T ss_pred ccccccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh---HHhhccceeEEEeecCCeEEEccCCcCcEEE
Confidence 3344455678999999996643 555443 5799999887644433 2234446999999999999999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 274 (443)
||+++........ +|..+|..+.|+| ++..|++|++|+.+++||+.+......+.+|++.|.|
T Consensus 95 fD~k~r~iLR~~~----------------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 95 FDMKSRVILRQLY----------------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred eccccHHHHHHHh----------------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9976643333322 4777999999999 5567888999999999999999876688899999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCC-ceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccc
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (443)
.+|+|.++.++++|+.||.|++||.| .. ..+.++ .|..+|..+.+-|.|..+++++. ..|+|||+.++
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR----~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G----- 227 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTR----SLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTG----- 227 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEec----cCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCC-----
Confidence 99999999999999999999999999 43 445555 48899999999999999998875 57999999864
Q ss_pred cCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhh
Q 013436 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
++.+.....|...+++++. ..++..|++|+-||.|++||+.+-+.+
T Consensus 228 ----------------------------~qll~~~~~H~KtVTcL~l------~s~~~rLlS~sLD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 228 ----------------------------GQLLTSMFNHNKTVTCLRL------ASDSTRLLSGSLDRHVKVFDTTNYKVV 273 (487)
T ss_pred ----------------------------ceehhhhhcccceEEEEEe------ecCCceEeecccccceEEEEccceEEE
Confidence 3444555557766666653 337899999999999999998777766
Q ss_pred hHh
Q 013436 434 FCR 436 (443)
Q Consensus 434 ~~~ 436 (443)
+.+
T Consensus 274 ~s~ 276 (487)
T KOG0310|consen 274 HSW 276 (487)
T ss_pred Eee
Confidence 543
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.1e-28 Score=212.17 Aligned_cols=263 Identities=16% Similarity=0.178 Sum_probs=210.5
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEee--------------ec-CCccceEEEEEECCCC
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--------------LA-KSLRWTVTDTSLSPDQ 181 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~--------------~~-~~~~~~v~~i~~s~~~ 181 (443)
...+..|.-+|.|++++|++++.++++.+++|.=|++.++....... .. ..|...+.+++.|+|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45678899999999999999999999999999999999885431111 11 2677889999999999
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 013436 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (443)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 261 (443)
++||+|+.|..|.||+..+.+....+. +|...|.+++|-.....+++++.|..|++|+++....
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~----------------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFK----------------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhccc----------------ccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 999999999999999999987765532 6888999999998888899999999999999999999
Q ss_pred eEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEE
Q 013436 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (443)
Q Consensus 262 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 341 (443)
+.++.+|.+.|..|... ..++.+.+|+.|+++++|++. .+....+.+|.+.+-|++|-. ...|++|+.||.|.
T Consensus 279 vetlyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi~-----eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKIP-----EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIA 351 (479)
T ss_pred HHHHhCCccceeeechh-cccceEEeccccceeEEEecc-----ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEE
Confidence 99999999999999986 777888888899999999994 455557788999999999985 45799999999999
Q ss_pred EEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCe
Q 013436 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (443)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~ 421 (443)
+|++-+.+++......+... ...... .+. ..+.+.+..|...++|+|+.+|+
T Consensus 352 LWs~~KKkplf~~~~AHgv~---------------------~~~~~~-~~~------~Witsla~i~~sdL~asGS~~G~ 403 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVI---------------------PELDPV-NGN------FWITSLAVIPGSDLLASGSWSGC 403 (479)
T ss_pred EeeecccCceeEeecccccc---------------------CCcccc-ccc------cceeeeEecccCceEEecCCCCc
Confidence 99999977654433211100 000000 000 12222334457889999999999
Q ss_pred EEEEEccCh
Q 013436 422 VYVYDLVSI 430 (443)
Q Consensus 422 v~iwd~~~g 430 (443)
|++|.+.+|
T Consensus 404 vrLW~i~~g 412 (479)
T KOG0299|consen 404 VRLWKIEDG 412 (479)
T ss_pred eEEEEecCC
Confidence 999999887
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1e-27 Score=206.40 Aligned_cols=263 Identities=21% Similarity=0.259 Sum_probs=211.3
Q ss_pred cceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE
Q 013436 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 184 (443)
..++-+....+....+.||...|+.+.|+|+...+++++.|-.|+||...... .......|..+|+.+..+|.|.||
T Consensus 242 ~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h~~~V~~ls~h~tgeYl 318 (506)
T KOG0289|consen 242 TAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPHEEPVTGLSLHPTGEYL 318 (506)
T ss_pred ceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---CccccccccccceeeeeccCCcEE
Confidence 44454555556667889999999999999999999999999999999987764 333567889999999999999999
Q ss_pred EEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 013436 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 264 (443)
++++.|++..+.|++++.......... ..-.+++.+|+|||-.|.+|..||.|+|||+.++..+..
T Consensus 319 lsAs~d~~w~Fsd~~~g~~lt~vs~~~--------------s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~ 384 (506)
T KOG0289|consen 319 LSASNDGTWAFSDISSGSQLTVVSDET--------------SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAK 384 (506)
T ss_pred EEecCCceEEEEEccCCcEEEEEeecc--------------ccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccccc
Confidence 999999999999999998765544321 112689999999999999999999999999999999999
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC-CCCCeEEEEECCCCCEEEEEeCCCCEEEE
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 343 (443)
|.+|.++|..++|+ .+|.+|+++++|+.|++||+| ..+...++.. ...++.++.|.+.|.+|+.++.|=.|+++
T Consensus 385 Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLR----Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 385 FPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLR----KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred CCCCCCceeEEEec-cCceEEEEEecCCeEEEEEeh----hhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 99999999999998 999999999999999999999 4455555442 23479999999999999999877555555
Q ss_pred eCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEE
Q 013436 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 423 (443)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~ 423 (443)
+-.+.+ ...+..+..|....+.. .|....++++++|.|..++
T Consensus 460 ~k~~k~--------------------------------W~~~~~~~~~sg~st~v------~Fg~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 460 KKKTKS--------------------------------WTEIKELADHSGLSTGV------RFGEHAQYLASTSMDAILR 501 (506)
T ss_pred eccccc--------------------------------ceeeehhhhccccccee------eecccceEEeeccchhheE
Confidence 533311 23455555555322222 2444678999999999999
Q ss_pred EEEc
Q 013436 424 VYDL 427 (443)
Q Consensus 424 iwd~ 427 (443)
++.+
T Consensus 502 ~~a~ 505 (506)
T KOG0289|consen 502 LYAL 505 (506)
T ss_pred Eeec
Confidence 8865
No 78
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.8e-28 Score=200.58 Aligned_cols=271 Identities=19% Similarity=0.241 Sum_probs=213.4
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
....+.||.+.|+.++-......+.+++.|.+.+||.+++|.++.+ ..+|.+.|++|+|++.+.++++++.|++.+|
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHH
Confidence 3457789999999999998888999999999999999999987764 6789999999999999999999999999999
Q ss_pred EECC------CCceeccccce------e----------ccc--CceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeE
Q 013436 196 VDVG------SGTMESLANVT------E----------IHD--GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (443)
Q Consensus 196 wd~~------~~~~~~~~~~~------~----------~~~--~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i 251 (443)
|... ......-.... + ..+ .+..+.....+|...|.+..|...|+.+++++.|.+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 9722 11000000000 0 000 1122223346788899999999999999999999999
Q ss_pred EEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEE
Q 013436 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331 (443)
Q Consensus 252 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 331 (443)
.+||++++.++..+.+|....+.++-+ |..+++++.+.|.+.++||+| ..-..+..|+||...|+++.|..+. .+
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFR---eaI~sV~VFQGHtdtVTS~vF~~dd-~v 371 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFR---EAIQSVAVFQGHTDTVTSVVFNTDD-RV 371 (481)
T ss_pred eeeeeccCceeccccCcchhccccccC-CcceEEEEeccCceeEeccch---hhcceeeeecccccceeEEEEecCC-ce
Confidence 999999999999999999999999997 888999999999999999999 3557788999999999999999765 58
Q ss_pred EEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCcc
Q 013436 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (443)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 411 (443)
++|+.|.+|+|||+++++. .+.++..... +.++. .+..+.
T Consensus 372 VSgSDDrTvKvWdLrNMRs---------------------------------plATIRtdS~---~NRva----vs~g~~ 411 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRS---------------------------------PLATIRTDSP---ANRVA----VSKGHP 411 (481)
T ss_pred eecCCCceEEEeeeccccC---------------------------------cceeeecCCc---cceeE----eecCCc
Confidence 9999999999999999753 2334433322 12222 222566
Q ss_pred EEEEeeCCCeEEEEEccChhhhhH
Q 013436 412 YIYTGSHDSCVYVYDLVSIQILFC 435 (443)
Q Consensus 412 ~l~tg~~dg~v~iwd~~~g~~~~~ 435 (443)
.|+.--.+..|++||++ |..+..
T Consensus 412 iIAiPhDNRqvRlfDln-G~RlaR 434 (481)
T KOG0300|consen 412 IIAIPHDNRQVRLFDLN-GNRLAR 434 (481)
T ss_pred eEEeccCCceEEEEecC-CCcccc
Confidence 78888888899999986 554443
No 79
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.8e-27 Score=193.83 Aligned_cols=302 Identities=17% Similarity=0.185 Sum_probs=210.9
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCe-----EEEEeeecCCccceEEEEEECCCCCeEEEEE-CC
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-----KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MS 190 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~d 190 (443)
...+.+|...|++++|+.||++||+++.|+.|+||++.+-. ++.... ..+ ..+.+.|+||-+-+++.. ..
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~d---hpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYD---HPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCC---CceEEEECCCcceEEEEEccC
Confidence 34678999999999999999999999999999999997631 111111 112 367899999987666554 45
Q ss_pred CeEEEEECCCCceeccccceeccc-CceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccC
Q 013436 191 PIVHIVDVGSGTMESLANVTEIHD-GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (443)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 269 (443)
..+++|.+...+- ........+. .+.| ...|.-.|..+-...++.+|++++.|..|.+||++ |+.+..+....
T Consensus 155 ~~l~vyk~~K~~d-G~~~~~~v~~D~~~f----~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 155 NKLCVYKLVKKTD-GSGSHHFVHIDNLEF----ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred CEEEEEEeeeccc-CCCCccccccccccc----chhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 5899998754332 1111111110 0111 12355677777777788999999999999999998 88888888777
Q ss_pred CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCC----CCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
..-+..+.+ |+|+++++++..--|++|.+--.. ..-..+..+.||...|..++|+++.+.+++.+.||+++|||+
T Consensus 229 ~~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 229 SSNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 777888887 999999999999999999974211 022345678899999999999999999999999999999998
Q ss_pred CCCCCccccC----Cc---ccccCcccccccCCCCCCcccCCCCeeEEEEeccceee------eeeEEEecCCccCCccE
Q 013436 346 RKMSSNASCN----LG---FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR------TLIRCHFSPVYSTGQKY 412 (443)
Q Consensus 346 ~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~d~~~ 412 (443)
.-.-...... .+ ........-.+...|.+..++...+..++.|....... ..-.++.+..|+++|++
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~ 387 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKY 387 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcE
Confidence 7532221111 11 11111112256778888888888888887776432111 11122334457889999
Q ss_pred EEEeeCCCeEEEEEccCh
Q 013436 413 IYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 413 l~tg~~dg~v~iwd~~~g 430 (443)
++|+| |..+++..-..|
T Consensus 388 ~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 388 IATCG-DRYVRVIRNTPG 404 (420)
T ss_pred Eeeec-ceeeeeecCCCc
Confidence 99987 567888764444
No 80
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.1e-27 Score=194.50 Aligned_cols=258 Identities=14% Similarity=0.103 Sum_probs=196.5
Q ss_pred CCCceEEEEECC-CCCEEEEEECCCeEEEEECCC-CeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 123 TTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 123 h~~~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
-.+.|.+++||| ...++++|+.|++||+|+++. |.... .....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 367899999999 556777999999999999987 33333 34567889999999999999999999999999999999
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCC--EEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEe
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (443)
++...+.. |..+|.++.|-+... .|++|+.|++|+.||.++..++.++. -...++++..-
T Consensus 104 ~Q~~~v~~-----------------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~ 165 (347)
T KOG0647|consen 104 GQVSQVAA-----------------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL 165 (347)
T ss_pred CCeeeeee-----------------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc
Confidence 97765543 777999999988555 89999999999999999999888874 45677877653
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcc
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (443)
..+++++..++.|.+|+++......+ .......-.+.+|+..++....+.|+-+|.+-|..+..+.+.
T Consensus 166 ---~pm~vVata~r~i~vynL~n~~te~k--~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~------- 233 (347)
T KOG0647|consen 166 ---YPMAVVATAERHIAVYNLENPPTEFK--RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK------- 233 (347)
T ss_pred ---CceeEEEecCCcEEEEEcCCCcchhh--hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc-------
Confidence 44788899999999999973221111 111123446889999888888899999999999998875431
Q ss_pred cccCcccccccCCCCCCcccCCCCeeEEEEeccceeee---eeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhH
Q 013436 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT---LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFC 435 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~ 435 (443)
.-.+|+.|..... .+-.+-+.+|.|....|+|+|.||++.+||-.....++.
T Consensus 234 -------------------------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 234 -------------------------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred -------------------------CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 1235555553111 111223334555678899999999999999887776665
Q ss_pred hH
Q 013436 436 RQ 437 (443)
Q Consensus 436 ~~ 437 (443)
.+
T Consensus 289 s~ 290 (347)
T KOG0647|consen 289 SE 290 (347)
T ss_pred cC
Confidence 43
No 81
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-26 Score=181.70 Aligned_cols=255 Identities=22% Similarity=0.270 Sum_probs=199.8
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCC------Ce------EEEEeeecCCccceEEEEEECCCCCeEEEEECCC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER------GW------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~------~~------~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg 191 (443)
...|.+++|+|.|.+.++|+...+.+|-.... +. ..........|++.|.|.+|+|+|.+|++|+.|.
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 56799999999999999999999988864321 10 0112224567889999999999999999999999
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC----CCEEEEEe-cCCeEEEEECCCCeeeEEee
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGS-SDDCIYVYDLEANKLSLRIL 266 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 266 (443)
+|++..++...+...-. .+++. -|.+.|..++|-.+ +..|++++ .|..|++-|...++....+.
T Consensus 112 ~ik~l~fn~dt~~~~g~------dle~n-----mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGH------DLEFN-----MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred eEEEEecccccccccCc------ceeee-----ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99998877654432211 11222 26678999999753 45666654 36678999999999999999
Q ss_pred ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC-------CCCCeEEEEECCCCCEEEEEeCCCC
Q 013436 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------HLEGITFIDSRGDGRYLISNGKDQA 339 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~dg~ 339 (443)
+|++.|.++-- .++-.+++|+.|.+|++||+| ...++.++.. ....|.+++..|.|++|++|-.|..
T Consensus 181 ghtghilalys--wn~~m~~sgsqdktirfwdlr----v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 181 GHTGHILALYS--WNGAMFASGSQDKTIRFWDLR----VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred CCcccEEEEEE--ecCcEEEccCCCceEEEEeee----ccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence 99999988743 468899999999999999999 6666665532 2357899999999999999999999
Q ss_pred EEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCC
Q 013436 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (443)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~d 419 (443)
..+||++. ++.++.|..|...+.+++ |||...|+++|+.|
T Consensus 255 c~lydirg----------------------------------~r~iq~f~phsadir~vr------fsp~a~yllt~syd 294 (350)
T KOG0641|consen 255 CMLYDIRG----------------------------------GRMIQRFHPHSADIRCVR------FSPGAHYLLTCSYD 294 (350)
T ss_pred eEEEEeeC----------------------------------CceeeeeCCCccceeEEE------eCCCceEEEEeccc
Confidence 99999998 677889988886555543 77789999999999
Q ss_pred CeEEEEEccChhhhhHh
Q 013436 420 SCVYVYDLVSIQILFCR 436 (443)
Q Consensus 420 g~v~iwd~~~g~~~~~~ 436 (443)
..|++-|+. |.+.+.+
T Consensus 295 ~~ikltdlq-gdla~el 310 (350)
T KOG0641|consen 295 MKIKLTDLQ-GDLAHEL 310 (350)
T ss_pred ceEEEeecc-cchhhcC
Confidence 999999986 5544433
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=182.80 Aligned_cols=251 Identities=23% Similarity=0.309 Sum_probs=198.1
Q ss_pred ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCC--CeEEEEeeecCCccceEEEEEECCC----CCeEEEEE-CCCe
Q 013436 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPD----QRHLVYAS-MSPI 192 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~v~~i~~s~~----~~~l~~~~-~dg~ 192 (443)
-..|.+.|+|.+|||+|.+|++|+.|.+|++.-... ...........-|.+.|..++|-.+ +..|++++ .|..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 367999999999999999999999999999976543 3333333445678889999999643 45666654 5667
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec-----
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----- 267 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----- 267 (443)
|++-|..+++..... .||.+.|.++ ++-++-++++|+.|.+|++||++-..++..+..
T Consensus 165 iy~tdc~~g~~~~a~----------------sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~ 227 (350)
T KOG0641|consen 165 IYITDCGRGQGFHAL----------------SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG 227 (350)
T ss_pred EEEeecCCCCcceee----------------cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC
Confidence 888787777654332 2577777776 344688999999999999999999988887652
Q ss_pred --cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 268 --HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 268 --~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
..+.|.++++. |.|++|++|-.|....+||+| .+.+++.+..|...|.++.|+|...||++++.|..|++-|+
T Consensus 228 glessavaav~vd-psgrll~sg~~dssc~lydir----g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 228 GLESSAVAAVAVD-PSGRLLASGHADSSCMLYDIR----GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred CcccceeEEEEEC-CCcceeeeccCCCceEEEEee----CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence 23578999994 999999999999999999999 89999999999999999999999999999999999999998
Q ss_pred CCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEE
Q 013436 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 425 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iw 425 (443)
..--. ..-.+.....|. ...+.+.|+| ..-.+++.+.|.++.+|
T Consensus 303 qgdla------------------------------~el~~~vv~ehk--dk~i~~rwh~----~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 303 QGDLA------------------------------HELPIMVVAEHK--DKAIQCRWHP----QDFSFISSSADKTATLW 346 (350)
T ss_pred ccchh------------------------------hcCceEEEEecc--CceEEEEecC----ccceeeeccCcceEEEe
Confidence 75210 012345556666 3456667777 45668899999999999
Q ss_pred Ecc
Q 013436 426 DLV 428 (443)
Q Consensus 426 d~~ 428 (443)
-+.
T Consensus 347 a~~ 349 (350)
T KOG0641|consen 347 ALN 349 (350)
T ss_pred ccC
Confidence 764
No 83
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.2e-26 Score=195.71 Aligned_cols=220 Identities=17% Similarity=0.220 Sum_probs=185.8
Q ss_pred ccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC
Q 013436 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (443)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~ 181 (443)
.+....+|+.-.+..+..+.+|.+.|+|+.||.||.+||||..+|.|+||+..++....+.. ..-..+.=+.|+|.+
T Consensus 84 gDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---~e~~dieWl~WHp~a 160 (399)
T KOG0296|consen 84 GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---QEVEDIEWLKWHPRA 160 (399)
T ss_pred CCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee---cccCceEEEEecccc
Confidence 34556678887888888999999999999999999999999999999999999986555433 222246668999999
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 013436 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (443)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 261 (443)
..|+.|+.||.+.+|.+.++...++.. ||..++++=.|.|+|+.++++..||+|++||+.++++
T Consensus 161 ~illAG~~DGsvWmw~ip~~~~~kv~~----------------Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 161 HILLAGSTDGSVWMWQIPSQALCKVMS----------------GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred cEEEeecCCCcEEEEECCCcceeeEec----------------CCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence 999999999999999999864433332 5777999999999999999999999999999987765
Q ss_pred eEEee---------------------------------------------------------------------------
Q 013436 262 SLRIL--------------------------------------------------------------------------- 266 (443)
Q Consensus 262 ~~~~~--------------------------------------------------------------------------- 266 (443)
+.++.
T Consensus 225 ~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 225 LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc
Confidence 44431
Q ss_pred --------------------ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC
Q 013436 267 --------------------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (443)
Q Consensus 267 --------------------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (443)
.|...|..+.|- + ..+|++++.||.|+.||.| ++..+..+.+|...|.+++++|
T Consensus 305 ~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~-~-t~~l~t~c~~g~v~~wDaR----tG~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTLRHICEHEDGVTKLKWL-N-TDYLLTACANGKVRQWDAR----TGQLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred cccceEEEEecccchhheeccCCCceEEEEEc-C-cchheeeccCceEEeeecc----ccceEEEEecCchheeEEEEcC
Confidence 244567777775 3 6788899999999999999 9999999999999999999999
Q ss_pred CCCEEEEEeCCCCEEEEeCC
Q 013436 327 DGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~ 346 (443)
+.+++++++.|++.+||+..
T Consensus 379 ~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 379 QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCcEEEEecCCCeEEEEecC
Confidence 99999999999999999864
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.6e-27 Score=224.93 Aligned_cols=280 Identities=19% Similarity=0.191 Sum_probs=209.4
Q ss_pred cCCCCceEEEEECCCCCEEEEEE--CCCeEEEEECCCC--------e-EEEEeeecCCccceEEEEEECCCCCeEEEEEC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERG--------W-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~--~d~~i~iwd~~~~--------~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~ 189 (443)
..+...|++++.+|||..+|||+ .|+.++||+.+.- . ..........|.+.|+|+.|+|||++||+|+.
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34466699999999999999999 8999999987531 1 11223345678999999999999999999999
Q ss_pred CCeEEEEECCCCceeccccceecccC-ce-eeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec
Q 013436 190 SPIVHIVDVGSGTMESLANVTEIHDG-LD-FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (443)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 267 (443)
|+.|.||................... .. -......+|...|.+++|+|++.+|++++.|++|.|||.++.+.+..+.+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 99999999874111111100000000 00 01112246889999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC------CCCeEEEEECCCCCEEEEEeC----C
Q 013436 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK----D 337 (443)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~----d 337 (443)
|.+.|..+.| +|-|++||+-+.|++|+||+.. .....+.+..+ ..-+..+.|+|||++|++... -
T Consensus 170 H~s~VKGvs~-DP~Gky~ASqsdDrtikvwrt~----dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 170 HQSLVKGVSW-DPIGKYFASQSDDRTLKVWRTS----DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK 244 (942)
T ss_pred ccccccceEE-CCccCeeeeecCCceEEEEEcc----cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence 9999999999 5999999999999999999976 44444444433 335678999999999997643 3
Q ss_pred CCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCc-cCC-------
Q 013436 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY-STG------- 409 (443)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d------- 409 (443)
.++.|.+-.+. ..-..+-||.....+. .|+|.+ ...
T Consensus 245 ~~~~IieR~tW----------------------------------k~~~~LvGH~~p~evv--rFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 245 STIAIIERGTW----------------------------------KVDKDLVGHSAPVEVV--RFNPKLFERNNKNGTST 288 (942)
T ss_pred ceeEEEecCCc----------------------------------eeeeeeecCCCceEEE--EeChHHhccccccCCcc
Confidence 45777766552 3345677887644444 466542 111
Q ss_pred -c----cEEEEeeCCCeEEEEEccChhhhhHhHHhhh
Q 013436 410 -Q----KYIYTGSHDSCVYVYDLVSIQILFCRQSLFK 441 (443)
Q Consensus 410 -~----~~l~tg~~dg~v~iwd~~~g~~~~~~~~~~~ 441 (443)
. ..+|+|+.|++|.||.....+++..++.++.
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 1 1688999999999999999999999888764
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.4e-27 Score=205.56 Aligned_cols=244 Identities=21% Similarity=0.278 Sum_probs=192.8
Q ss_pred ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC-CeEEEEECCCeEEEEEC
Q 013436 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDV 198 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~ 198 (443)
+......|+++.|-.||++||+|...|.|+|||..+.. .......|+.+|..+.|+|++ ..|++|+.|+.+++||+
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~---iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV---ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH---HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 55567889999999999999999999999999965521 223467899999999999965 56778888899999999
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCC-eeeEEeeccCCCeEEEE
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVC 276 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~ 276 (443)
.+... ... ..+|+..|.|.+|+| ++..+++|+.||.|++||++.. ..+..+ .|..+|..+.
T Consensus 141 s~a~v--~~~--------------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl 203 (487)
T KOG0310|consen 141 STAYV--QAE--------------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVL 203 (487)
T ss_pred CCcEE--EEE--------------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEE
Confidence 98763 111 226888999999999 4558999999999999999987 445555 7999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCC
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (443)
+- ++|.+|++++.+ .|++||+-. .++.+..+..|...|+|+.+..++..|++++-|+.|++||+.+.
T Consensus 204 ~l-psgs~iasAgGn-~vkVWDl~~---G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-------- 270 (487)
T KOG0310|consen 204 AL-PSGSLIASAGGN-SVKVWDLTT---GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-------- 270 (487)
T ss_pred Ec-CCCCEEEEcCCC-eEEEEEecC---CceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce--------
Confidence 97 788888888764 899999972 23444455559999999999999999999999999999998772
Q ss_pred cccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
+.+..+. ....++.+. .|||++.++.|..||.+.+=+...
T Consensus 271 --------------------------Kvv~s~~---~~~pvLsia----vs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 271 --------------------------KVVHSWK---YPGPVLSIA----VSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred --------------------------EEEEeee---cccceeeEE----ecCCCceEEEecccceeeeehhhc
Confidence 2233332 223444443 556899999999999988775443
No 86
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-26 Score=191.44 Aligned_cols=247 Identities=17% Similarity=0.218 Sum_probs=196.5
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC--eEEEEECCCeE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSPIV 193 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~~~~~dg~i 193 (443)
+.+.+..|.++|++++.+ +.++|+|+.|-+|+|||+.+...+. ....|.+.|+++.|.+.-. .|++|+.||.|
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 456788999999999996 8899999999999999999875544 3456788999999999765 89999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeE
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 273 (443)
.+|+...-.+...+. +|...|+.++.+|.+++-++.+.|+.++.||+-.++.-..+.- ...-+
T Consensus 110 ~iw~~~~W~~~~slK----------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at 172 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLK----------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKAT 172 (362)
T ss_pred EEEEcCCeEEeeeec----------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcce
Confidence 999998765543332 5777899999999999999999999999999998875544432 22334
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccc
Q 013436 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (443)
.+.|+ +.|.+++.++.+ .|-+|.+. .......+.. ...+.++.|. ++..|++|+.|+.|.+||...
T Consensus 173 ~v~w~-~~Gd~F~v~~~~-~i~i~q~d----~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds------ 238 (362)
T KOG0294|consen 173 LVSWS-PQGDHFVVSGRN-KIDIYQLD----NASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDS------ 238 (362)
T ss_pred eeEEc-CCCCEEEEEecc-EEEEEecc----cHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCC------
Confidence 59998 788888887766 68899987 4444444332 2456677676 567899999999999999987
Q ss_pred cCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
..+...+.+|..++..+.....+ ++.+|+|++.||.|++||+...
T Consensus 239 ----------------------------~~~~~~~~AH~~RVK~i~~~~~~----~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 239 ----------------------------DTPLTEFLAHENRVKDIASYTNP----EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ----------------------------CccceeeecchhheeeeEEEecC----CceEEEEeccCceEEEEEcccc
Confidence 45577888998776665544444 6899999999999999999765
No 87
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.9e-27 Score=219.17 Aligned_cols=234 Identities=15% Similarity=0.163 Sum_probs=174.4
Q ss_pred CccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccc---------------------cce-----------ecc-
Q 013436 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA---------------------NVT-----------EIH- 213 (443)
Q Consensus 167 ~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------------------~~~-----------~~~- 213 (443)
.|.+.|.++.||+||+|||+|+.|+.|+||.+...+..... ... ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 79999999999999999999999999999998761110000 000 000
Q ss_pred -cC-------cee---eccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCC
Q 013436 214 -DG-------LDF---SAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (443)
Q Consensus 214 -~~-------~~~---~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 282 (443)
.. ..| +.....||.+.|.+|.|+. ..+|++++.|.+|++|++....++..| .|...|+|++|+|.+.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCC
Confidence 00 000 0112268999999999995 457999999999999999999999888 8999999999999999
Q ss_pred CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccC
Q 013436 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 362 (443)
Q Consensus 283 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (443)
++|++|+.||.|+||++. ...+........-|++++|.|||++.+.|+.+|.+++|+....+......
T Consensus 423 ryFiSGSLD~KvRiWsI~-----d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~------- 490 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSIS-----DKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH------- 490 (712)
T ss_pred CcEeecccccceEEeecC-----cCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee-------
Confidence 999999999999999995 44444555556899999999999999999999999999998854322211
Q ss_pred cccccccCCCCCCcccCCCCeeEEEEeccc-eeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhHHh
Q 013436 363 WDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQSL 439 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~~~ 439 (443)
+..-.+.. ....+.+..|.|. +..-|++.+.|..|+|+|.++.+++..|+.+
T Consensus 491 ----------------------I~~~~~Kk~~~~rITG~Q~~p~---~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~ 543 (712)
T KOG0283|consen 491 ----------------------IRLHNKKKKQGKRITGLQFFPG---DPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF 543 (712)
T ss_pred ----------------------EeeccCccccCceeeeeEecCC---CCCeEEEecCCCceEEEeccchhhhhhhccc
Confidence 11000000 0113344445543 3346888889999999999988888887654
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=6.6e-27 Score=223.15 Aligned_cols=255 Identities=16% Similarity=0.198 Sum_probs=204.7
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCC----------C-----eEEEEeeecCCccceEEEEEECCCC
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER----------G-----WKIQKDILAKSLRWTVTDTSLSPDQ 181 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~----------~-----~~~~~~~~~~~~~~~v~~i~~s~~~ 181 (443)
.-....|.+.|.|+.|+|||++||+|+.|+.|.||.... | +.......+.+|...|.+++|+|++
T Consensus 62 l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD 141 (942)
T ss_pred heeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc
Confidence 345688999999999999999999999999999999873 0 1223444677899999999999999
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 013436 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (443)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 261 (443)
.+|++++.|++|.|||..+.+...... +|...|..+.|.|-|++|++-+.|++|+||++.+..+
T Consensus 142 ~~lvS~s~DnsViiwn~~tF~~~~vl~----------------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 142 SLLVSVSLDNSVIIWNAKTFELLKVLR----------------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred cEEEEecccceEEEEccccceeeeeee----------------cccccccceEECCccCeeeeecCCceEEEEEccccee
Confidence 999999999999999999886554433 5777899999999999999999999999999888777
Q ss_pred eEEeecc------CCCeEEEEEeCCCCCEEEEeeC----CCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC----
Q 013436 262 SLRILAH------TSDVNTVCFGDESGHLIYSGSD----DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---- 327 (443)
Q Consensus 262 ~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---- 327 (443)
.+.+..+ ......+.|+ |+|++|++... -..+.|.+.. +.+.-..+.||..++.++.|+|.
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWS-PDG~~las~nA~n~~~~~~~IieR~----tWk~~~~LvGH~~p~evvrFnP~lfe~ 280 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWS-PDGHHLASPNAVNGGKSTIAIIERG----TWKVDKDLVGHSAPVEVVRFNPKLFER 280 (942)
T ss_pred eEeeccchhhCCCcceeeecccC-CCcCeecchhhccCCcceeEEEecC----CceeeeeeecCCCceEEEEeChHHhcc
Confidence 7766543 3457889998 89999988642 2378888876 77778889999999999999981
Q ss_pred -CC------------EEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEecccee
Q 013436 328 -GR------------YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (443)
Q Consensus 328 -~~------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (443)
.. .+|+|+.|++|-||....++++... ..+..+
T Consensus 281 ~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi-------------------------------~~lf~~--- 326 (942)
T KOG0973|consen 281 NNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI-------------------------------HNLFNK--- 326 (942)
T ss_pred ccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh-------------------------------hhhhcC---
Confidence 11 5789999999999998775543321 112222
Q ss_pred eeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 395 ~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
.+.. ..|||||..|+.++.||+|.+..+...+
T Consensus 327 -SI~D----msWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 327 -SIVD----MSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred -ceee----eeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 2233 3466699999999999999999997654
No 89
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=206.44 Aligned_cols=317 Identities=17% Similarity=0.260 Sum_probs=240.6
Q ss_pred CCCcchhHHHHHHhhhccCCccccccc-ccCCCCCCccchhhhcccCCccCCCcccccccccceeecccccCCCccccCC
Q 013436 45 KPLSALDHEIAQLTKLKSEPKEHFSKE-VPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQT 123 (443)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 123 (443)
.....|+....++.+++..+.+.+... ....+.++..++-+.++.. +..++...++.. ....+.+.--
T Consensus 188 s~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d----~~lrifqvDGk~-------N~~lqS~~l~ 256 (514)
T KOG2055|consen 188 SRSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLD----GTLRIFQVDGKV-------NPKLQSIHLE 256 (514)
T ss_pred cccccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCC----CcEEEEEecCcc-------Chhheeeeec
Confidence 356678888888888887777766555 3446667777777777643 333444333210 1122223334
Q ss_pred CCceEEEEECCCCC-EEEEEECCCeEEEEECCCCeEEEEeeecCCcc-ceEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 013436 124 TSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 124 ~~~v~~~~~s~~~~-~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 201 (443)
..+|.+++|.|+|. .+++++....++.||+.+.+ +.+.....++. ..+.....+|++++|+..+..|.|++....++
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak-~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK-VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccc-cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 67899999999998 89999999999999999874 33333344433 34778889999999999999999999999999
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCC-CeEEEEEeCC
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-DVNTVCFGDE 280 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~ 280 (443)
+.+....+.. .|..++|+.+++.|++++.+|.|++||+++..++.++....+ .-+++|.+ .
T Consensus 336 eli~s~KieG-----------------~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S-~ 397 (514)
T KOG2055|consen 336 ELITSFKIEG-----------------VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCIS-L 397 (514)
T ss_pred hhhheeeecc-----------------EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeec-C
Confidence 8876665443 789999999999999999999999999999999988864322 23567776 8
Q ss_pred CCCEEEEeeCCCeEEEEecccC--CCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC--CCCEEEEeCCCCCCccccCC
Q 013436 281 SGHLIYSGSDDNLCKVWDRRCL--NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK--DQAIKLWDIRKMSSNASCNL 356 (443)
Q Consensus 281 ~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~ 356 (443)
++.+||+|+..|.|.|||..+. ....+++..+......|+++.|+|+.++||.++. +..+++-.+.+
T Consensus 398 ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS--------- 468 (514)
T KOG2055|consen 398 NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS--------- 468 (514)
T ss_pred CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc---------
Confidence 8899999999999999997632 1245777888888899999999999999987764 77899998877
Q ss_pred cccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
..+|.......+-+..+.+++|||.+.+||.|..+|.|.+|.+.
T Consensus 469 ----------------------------~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 ----------------------------CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ----------------------------eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 33444444444444555667788899999999999999999874
No 90
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.7e-26 Score=184.42 Aligned_cols=208 Identities=16% Similarity=0.210 Sum_probs=181.1
Q ss_pred CCccccCCCCceEEEEECCC-CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 116 GPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~-~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
..+...+|.+.|-.++|+|. ..+|++++.|.+|++||...+++........+ -.-+.|+|+|.++++++.|..|.
T Consensus 56 ~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e----ni~i~wsp~g~~~~~~~kdD~it 131 (313)
T KOG1407|consen 56 KELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE----NINITWSPDGEYIAVGNKDDRIT 131 (313)
T ss_pred hhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc----ceEEEEcCCCCEEEEecCcccEE
Confidence 34567899999999999985 57899999999999999999987776543332 34478999999999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEE
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 274 (443)
+.|.++.+.....+.. ..+..+.|+.++.+++.....|+|.|.....-+++..+.+|...+.|
T Consensus 132 ~id~r~~~~~~~~~~~-----------------~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCic 194 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQFK-----------------FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCIC 194 (313)
T ss_pred EEEecccceeehhccc-----------------ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEE
Confidence 9999887765444322 26788999988888877777899999999999999999999999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
|.|. |+|++||+|+.|..+.+||+. ..-+++.+..+.-+|..+.|+.+|++||+++.|..|-|=++.++.
T Consensus 195 I~f~-p~GryfA~GsADAlvSLWD~~----ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 195 IEFD-PDGRYFATGSADALVSLWDVD----ELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred EEEC-CCCceEeeccccceeeccChh----HhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence 9996 999999999999999999998 778889999999999999999999999999999999999988843
No 91
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=9e-28 Score=199.51 Aligned_cols=273 Identities=17% Similarity=0.215 Sum_probs=223.2
Q ss_pred CccCCCccccc---ccccceeecccccCCCc--------cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEE
Q 013436 91 GNYSGRGRFSA---ADCCHMLSRYLPVNGPW--------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI 159 (443)
Q Consensus 91 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~ 159 (443)
..|+.++.|.. .+.-.-+|++..++... .+--|..+|.|+.||.|..+||+|+.||.|+||.+.+|.++
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl 298 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL 298 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHH
Confidence 34566666643 33444466665544322 33457899999999999999999999999999999999888
Q ss_pred EEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC
Q 013436 160 QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (443)
Q Consensus 160 ~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 239 (443)
.+ ....|...|+++.||.|+..+++++.|.++++.-+++|++...+. ||+..|+...|.+||
T Consensus 299 Rr--FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr----------------GHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 299 RR--FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR----------------GHSSYVNEATFTDDG 360 (508)
T ss_pred HH--hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc----------------CccccccceEEcCCC
Confidence 75 345788889999999999999999999999999999998765443 788899999999999
Q ss_pred CEEEEEecCCeEEEEECCCCeeeEEee--ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC---
Q 013436 240 RELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--- 314 (443)
Q Consensus 240 ~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--- 314 (443)
..+++++.||+|++|+..+.+++.+++ +..-+|+++-..|.+...+++|...++|+|.++ .++.++.+..
T Consensus 361 ~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-----qGQvVrsfsSGkR 435 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-----QGQVVRSFSSGKR 435 (508)
T ss_pred CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-----cceEEeeeccCCc
Confidence 999999999999999999999998887 345678888888889999999999999999998 6888888763
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEecccee
Q 013436 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (443)
Q Consensus 315 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (443)
..+...+...+|.|.++.+.+.|+.++.+.+.+ +..-.++.-|.
T Consensus 436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~~s----------------------------------G~LE~tl~VhE-- 479 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS----------------------------------GKLERTLPVHE-- 479 (508)
T ss_pred cCCceEEEEecCCCcEEEEEccCcEEEEEEeec----------------------------------Cceeeeeeccc--
Confidence 234566777999999999999999999999888 44455555565
Q ss_pred eeeeEEEecCCccCCccEEEEeeCCCeEEEEE
Q 013436 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (443)
Q Consensus 395 ~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd 426 (443)
..++....+| ..+.||+-++||.+++|.
T Consensus 480 kdvIGl~HHP----HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 480 KDVIGLTHHP----HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccccccccCc----ccchhhhhcccchhhhcC
Confidence 2344444444 689999999999999995
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=197.98 Aligned_cols=241 Identities=17% Similarity=0.259 Sum_probs=199.7
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
..+.++...|....+++|+.|..+.++|...++.+. ...+|...|+.+.++|+...+++++.|..|+||........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 457888888888899999999999999998874443 67899999999999999999999999999999998766532
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeecc--CCCeEEEEEeCCCC
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--TSDVNTVCFGDESG 282 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~ 282 (443)
.... .|..+|+.+..+|.|.||++++.||+..+.|++++..+...... .-.+++.+|+ |+|
T Consensus 297 ~~~~----------------~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pDg 359 (506)
T KOG0289|consen 297 TSSR----------------PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PDG 359 (506)
T ss_pred cccc----------------cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CCc
Confidence 2221 36669999999999999999999999999999999877665432 2358999998 999
Q ss_pred CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccC
Q 013436 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 362 (443)
Q Consensus 283 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (443)
.+|.+|..|+.|+|||+. +...+..|.+|.++|..++|+.+|-+|++++.|+.|++||+|..+
T Consensus 360 Lifgtgt~d~~vkiwdlk----s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~------------- 422 (506)
T KOG0289|consen 360 LIFGTGTPDGVVKIWDLK----SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK------------- 422 (506)
T ss_pred eEEeccCCCceEEEEEcC----CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-------------
Confidence 999999999999999998 777899999999999999999999999999999999999999843
Q ss_pred cccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 363 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
.+.++...... .+.... |.+.|.+|+.++.|=.|++++-.
T Consensus 423 ---------------------n~kt~~l~~~~-~v~s~~----fD~SGt~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 423 ---------------------NFKTIQLDEKK-EVNSLS----FDQSGTYLGIAGSDLQVYICKKK 462 (506)
T ss_pred ---------------------ccceeeccccc-cceeEE----EcCCCCeEEeecceeEEEEEecc
Confidence 23333333221 233333 44479999999999888888743
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-27 Score=215.01 Aligned_cols=243 Identities=21% Similarity=0.332 Sum_probs=200.4
Q ss_pred EEEEC-CCCCEEEEEECCCeEEEEECCCCeEE--E-EeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee
Q 013436 129 VSQFS-ADGSLFVAGFQASQIRIYDVERGWKI--Q-KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 129 ~~~~s-~~~~~l~~g~~d~~i~iwd~~~~~~~--~-~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
.+..+ |.+++|++|+.||.|++|+....... . -......|...|.+++...+++.|++++.|-+|++|+...+...
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 45555 45678999999999999998764221 1 13456678888999999999999999999999999998876422
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEE-eCCCCEEEEEecCCeEEEEECCCCe--eeE--------Eee-ccCCCe
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKF-STDGRELVAGSSDDCIYVYDLEANK--LSL--------RIL-AHTSDV 272 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~~l~~~~~dg~i~iwd~~~~~--~~~--------~~~-~~~~~v 272 (443)
....+ ..|+..|.|++. .++...+|+|+-|+.|.+||++++. .+. .+. ++..+|
T Consensus 109 c~sti--------------r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 109 CMSTI--------------RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred hHhhh--------------hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 22221 247779999999 7888999999999999999999772 222 233 778899
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcc
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (443)
++++.+ +.+..|++|+..+.+++||.+ +.+.+..+.||..-|..+..++||..+++++.||+|++||+..
T Consensus 175 YSLA~N-~t~t~ivsGgtek~lr~wDpr----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq----- 244 (735)
T KOG0308|consen 175 YSLAMN-QTGTIIVSGGTEKDLRLWDPR----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ----- 244 (735)
T ss_pred eeeecC-CcceEEEecCcccceEEeccc----cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc-----
Confidence 999998 888999999999999999999 8888889999999999999999999999999999999999998
Q ss_pred ccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
.+++.+|..|.... |+..-+|+=..+++|+.||.|+.=|+.+-
T Consensus 245 -----------------------------QrCl~T~~vH~e~V------WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 245 -----------------------------QRCLATYIVHKEGV------WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred -----------------------------cceeeeEEeccCce------EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 67788899998543 33344456789999999999999999873
No 94
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=203.66 Aligned_cols=258 Identities=13% Similarity=0.140 Sum_probs=207.2
Q ss_pred ccccceeecccccC--CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC
Q 013436 102 ADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (443)
Q Consensus 102 ~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~ 179 (443)
.++...+|+..+.+ ....+.|..++|+.++|.++++.+++++.|+.+++|+++..+... .+.+|+..|+++.|..
T Consensus 195 ~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~ 271 (459)
T KOG0288|consen 195 SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKL 271 (459)
T ss_pred hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhc
Confidence 34445566766666 566788999999999999999999999999999999999874443 5778999999999988
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 013436 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (443)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 259 (443)
....+++|+.|.+|++||+....+........ .+.+|..+ ...+++|..|+.|++||.++.
T Consensus 272 ~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-----------------~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 272 SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS-----------------QCNDIVCS--ISDVISGHFDKKVRFWDIRSA 332 (459)
T ss_pred cccceeeccccchhhhhhhhhhheeccccccc-----------------cccceEec--ceeeeecccccceEEEeccCC
Confidence 77779999999999999999876655443222 34555554 556899999999999999999
Q ss_pred eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC----CCCeEEEEECCCCCEEEEEe
Q 013436 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----LEGITFIDSRGDGRYLISNG 335 (443)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~ 335 (443)
.+......+. .|+++..+ .++..+.+++.|.++.+.|++ .......+... ....+.+.|||++.|+++|+
T Consensus 333 ~~~~sv~~gg-~vtSl~ls-~~g~~lLsssRDdtl~viDlR----t~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 333 DKTRSVPLGG-RVTSLDLS-MDGLELLSSSRDDTLKVIDLR----TKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred ceeeEeecCc-ceeeEeec-cCCeEEeeecCCCceeeeecc----cccEEEEeeccccccccccceeEECCCCceeeecc
Confidence 9998887655 99999998 888888899999999999999 65665555432 23488899999999999999
Q ss_pred CCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEE
Q 013436 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (443)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~t 415 (443)
.||.|+||++.+ ++....+........+..+.|+ |-|..|++
T Consensus 407 ~dgsv~iW~v~t----------------------------------gKlE~~l~~s~s~~aI~s~~W~----~sG~~Lls 448 (459)
T KOG0288|consen 407 ADGSVYIWSVFT----------------------------------GKLEKVLSLSTSNAAITSLSWN----PSGSGLLS 448 (459)
T ss_pred CCCcEEEEEccC----------------------------------ceEEEEeccCCCCcceEEEEEc----CCCchhhc
Confidence 999999999998 4445555554433234444444 47999999
Q ss_pred eeCCCeEEEE
Q 013436 416 GSHDSCVYVY 425 (443)
Q Consensus 416 g~~dg~v~iw 425 (443)
++.++.+.+|
T Consensus 449 adk~~~v~lW 458 (459)
T KOG0288|consen 449 ADKQKAVTLW 458 (459)
T ss_pred ccCCcceEec
Confidence 9999999999
No 95
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=5.7e-26 Score=208.15 Aligned_cols=250 Identities=19% Similarity=0.269 Sum_probs=207.4
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
..+.+|.+.|.++++|.+...+++|+. +.|+||+..+.+++.+.... .+.+..|-|.++++++|...|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~-----y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG-----YILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc-----cEEEEEecCCCceEEEeccCCceEEEE
Confidence 466899999999999999988888854 78999999999888764433 588999999999999999999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCC-----Cee--eEEe-----
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKL--SLRI----- 265 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~--~~~~----- 265 (443)
+.+........ .|.+.|++++.+||++.+++|+.|.+|++||..- +.. +..+
T Consensus 441 laS~~l~Eti~----------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 441 LASASLVETIR----------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred eehhhhhhhhh----------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 98876644333 3777999999999999999999999999999632 111 1111
Q ss_pred eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
..-...|.|+.++ |++++|+++--|++|+||-+. +.+..-.+.||.-+|.|+..+||++.++||+.|..|+||-+
T Consensus 505 Lel~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 505 LELEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred EeccccEEEEEEc-CCCcEEEEEeccCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence 1346789999998 999999999999999999998 77888899999999999999999999999999999999988
Q ss_pred CCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEE
Q 013436 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 425 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iw 425 (443)
.= +.+-+.+.+|...+ +.+.|. |+...++++|.||.|+.|
T Consensus 580 dF----------------------------------GDCHKS~fAHdDSv--m~V~F~----P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 580 DF----------------------------------GDCHKSFFAHDDSV--MSVQFL----PKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred cc----------------------------------chhhhhhhcccCce--eEEEEc----ccceeEEEecCcceEEee
Confidence 76 55566777887433 333444 478899999999999999
Q ss_pred EccChhhhh
Q 013436 426 DLVSIQILF 434 (443)
Q Consensus 426 d~~~g~~~~ 434 (443)
|-..-+.+.
T Consensus 620 Dg~kFe~iq 628 (888)
T KOG0306|consen 620 DGEKFEEIQ 628 (888)
T ss_pred chhhhhhhe
Confidence 965554443
No 96
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.4e-25 Score=185.40 Aligned_cols=258 Identities=15% Similarity=0.149 Sum_probs=194.6
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
.+.|..+.|+|.++.|++++.||.+++||+...... ..-.|..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 567999999999999999999999999999876222 3345777899999987 45689999999999999999876
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (443)
..+.. |..+|.++.+++....+++|+.|++|++||.+.......+.. ...|.++..+ ++
T Consensus 88 ~~igt-----------------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~---g~ 146 (323)
T KOG1036|consen 88 DQIGT-----------------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS---GN 146 (323)
T ss_pred eeecc-----------------CCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc---CC
Confidence 55443 666999999999888899999999999999998655555543 4478888764 77
Q ss_pred EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCc
Q 013436 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (443)
.|++|+.|..+.+||+|...... ...-....-.+.++++-|++.=+++++-||.|.+=.+.......
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~----------- 213 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ----------- 213 (323)
T ss_pred EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh-----------
Confidence 89999999999999999543211 11122345678999999988889999999999886666531111
Q ss_pred ccccccCCCCCCcccCCCCeeEEEEeccceee---eeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhHHh
Q 013436 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLR---TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQSL 439 (443)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~~~ 439 (443)
..-..|+.|.... ...-.+-+..|+|-.+.|||||.||.|.+||+.+.+.+..+..+
T Consensus 214 -------------------skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 214 -------------------SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred -------------------hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 1123444443211 11222233345556788999999999999999999988877644
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=209.33 Aligned_cols=221 Identities=15% Similarity=0.264 Sum_probs=192.5
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEE-CCCCCeEEEEECCCeEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-SPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~-s~~~~~l~~~~~dg~i~i 195 (443)
...++.|.+.|..++...+++.|++++.|-+|++|+...+. -........|...|.|++. -++...+|+|+.|+.|.+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 55678999999999999999999999999999999998763 2223356789999999999 788899999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCC-CCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADD-GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 274 (443)
||++++....+...... ..... .|+..+|++++.++.|..|++|+..+.|++||.++.+.+..+.+|+..|.+
T Consensus 145 WDin~~~~~l~~s~n~~------t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNV------TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV 218 (735)
T ss_pred EEccCcchhhhhhcccc------ccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE
Confidence 99998844222221111 11112 278889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
+..+ ++|..+++++.||+|++||+. ...++.++..|...|.++..+|+-..+.+|+.||.|..=|+++..
T Consensus 219 ll~~-dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 219 LLVN-DDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred EEEc-CCCCeEeecCCCceEEeeecc----ccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence 9997 899999999999999999999 889999999999999999999999999999999999999999953
No 98
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-25 Score=181.16 Aligned_cols=239 Identities=21% Similarity=0.262 Sum_probs=186.3
Q ss_pred CCccccc-ccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEE
Q 013436 95 GRGRFSA-ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT 173 (443)
Q Consensus 95 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 173 (443)
++.-|+- .+...-+|.-+.++..-.+.||.+.|+|++.+.+.+++++|+.|.++++||+++|+.+...... .+|.
T Consensus 22 GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~----~~Vk 97 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN----SPVK 97 (327)
T ss_pred CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC----CeeE
Confidence 3444443 3344446777788888899999999999999999999999999999999999999887764433 3699
Q ss_pred EEEECCCCCeEEEEEC-----CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC
Q 013436 174 DTSLSPDQRHLVYASM-----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (443)
Q Consensus 174 ~i~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 248 (443)
.+.|+++|++++.... .+.|.++|++..........+ -+... -+...++.+-|.|-++.|++|..+
T Consensus 98 ~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep----~~kI~-----t~~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 98 RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP----YLKIP-----TPDSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc----eEEec-----CCccceeeeeecccCCEEEEecCC
Confidence 9999999998877653 468999999854321100000 00000 122478999999999999999999
Q ss_pred CeEEEEECCCC-eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCC----------------------
Q 013436 249 DCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK---------------------- 305 (443)
Q Consensus 249 g~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------------------- 305 (443)
|.|.+||++++ +.+.....|...|+.|+++ ++..++++++.|.+-++||.+.+...
T Consensus 169 G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 169 GSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVI 247 (327)
T ss_pred CcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEE
Confidence 99999999998 4555667899999999998 89999999999999999998732110
Q ss_pred -----------------------------CceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 306 -----------------------------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 306 -----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.+.+....+|-++|++++|+|+|+..++|+.||.|++.-+..
T Consensus 248 lgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 248 LGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 012334567999999999999999999999999999987654
No 99
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2e-25 Score=194.14 Aligned_cols=256 Identities=19% Similarity=0.239 Sum_probs=199.7
Q ss_pred CEEEEEEC-CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccC
Q 013436 137 SLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (443)
Q Consensus 137 ~~l~~g~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (443)
.+++++.. ...|.+|.+.......... -..++|.+++-+|+|.+|+.|+..|.|++|.+.+|....+..
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~---v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~------- 120 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYI---VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS------- 120 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhc---ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-------
Confidence 46666544 3468999987654433222 234479999999999999999899999999999998876553
Q ss_pred ceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC---------CCeeeEEeeccCCCeEEEEEeCC-CCCEE
Q 013436 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---------ANKLSLRILAHTSDVNTVCFGDE-SGHLI 285 (443)
Q Consensus 216 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~i~~~~~-~~~~l 285 (443)
+|...|+++.|+.||.+|++|+.||.|.+|++. +.++...+..|+-+|+++...+. ...++
T Consensus 121 ---------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl 191 (476)
T KOG0646|consen 121 ---------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL 191 (476)
T ss_pred ---------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceE
Confidence 467799999999999999999999999999863 34577788899999999988632 34689
Q ss_pred EEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCccc
Q 013436 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (443)
Q Consensus 286 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (443)
++++.|.++++||+. .+..+..+. ....+.+++.+|-++.+..|+.+|.|.+.++......... +
T Consensus 192 ~TaS~D~t~k~wdlS----~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~----------v 256 (476)
T KOG0646|consen 192 YTASEDRTIKLWDLS----LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG----------V 256 (476)
T ss_pred EEecCCceEEEEEec----cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccc----------c
Confidence 999999999999998 777776665 5578999999999999999999999999998774321100 0
Q ss_pred ccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhHH
Q 013436 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQS 438 (443)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~~ 438 (443)
...-.+..+..+..+.||.....+.++. ++.||..|++|+.||.|+|||+.+.++++++++
T Consensus 257 --------~~k~~~~~~t~~~~~~Gh~~~~~ITcLa----is~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 257 --------NQKGRHEENTQINVLVGHENESAITCLA----ISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred --------cccccccccceeeeeccccCCcceeEEE----EecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 0112233466788899998743333333 344899999999999999999999999988873
No 100
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=7e-27 Score=187.41 Aligned_cols=254 Identities=20% Similarity=0.294 Sum_probs=212.6
Q ss_pred CCCccccCCCCceEEEEECC---CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC
Q 013436 115 NGPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (443)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~---~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg 191 (443)
..|.+-.+|..+|..++||| +|-+|++++.|+.-.+-+-++|..+.. ..+|.+.|....++.+...-|+++.|-
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt---feghkgavw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT---FEGHKGAVWSATLNKNATRAASAAADF 81 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe---eeccCcceeeeecCchhhhhhhhcccc
Confidence 34566789999999999995 889999999999999999999877764 678999999999999988899999999
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe-eeEEeeccCC
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTS 270 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~ 270 (443)
+.++||.-++.....+. |+.-|..++|+.|.++|++|+.+..++|||++..+ +...+.+|.+
T Consensus 82 takvw~a~tgdelhsf~-----------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFE-----------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred hhhhhhhhhhhhhhhhh-----------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 99999999887665544 55579999999999999999999999999998764 5667889999
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
.|..+-|. ...+.|++++.|++|++||.+ ++..++.+. ...+|+++.++++|++|.++ ..+.|++||..+...
T Consensus 145 ~Ir~v~wc-~eD~~iLSSadd~tVRLWD~r----Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 145 GIRTVLWC-HEDKCILSSADDKTVRLWDHR----TGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL 217 (334)
T ss_pred cceeEEEe-ccCceEEeeccCCceEEEEec----cCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccc
Confidence 99999998 777788888999999999999 888888876 45689999999999977665 567899999998443
Q ss_pred ccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
++.++... .+ -+...+|+..++++|++|+.++.||..+|
T Consensus 218 ----------------------------------lKs~k~P~---nV----~SASL~P~k~~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 218 ----------------------------------LKSYKMPC---NV----ESASLHPKKEFFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred ----------------------------------eeeccCcc---cc----ccccccCCCceEEecCcceEEEEEeccCC
Confidence 33333222 12 22335668899999999999999999999
Q ss_pred hhhhHh
Q 013436 431 QILFCR 436 (443)
Q Consensus 431 ~~~~~~ 436 (443)
+.+.++
T Consensus 257 eEi~~~ 262 (334)
T KOG0278|consen 257 EEIGSY 262 (334)
T ss_pred ceeeec
Confidence 987663
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.1e-25 Score=195.37 Aligned_cols=219 Identities=15% Similarity=0.207 Sum_probs=179.8
Q ss_pred CCCccccCCCCceEEEEECCCC-CEEEEEECCCeEEEEECCCCeE----EEEeeecCCccceEEEEEECCC-CCeEEEEE
Q 013436 115 NGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPD-QRHLVYAS 188 (443)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~ 188 (443)
++-..+.+|...-+.++|++.. -.|++|+.|++|++||+..... +.......+|...|..++|++. ..+|++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 3345789999999999999965 5689999999999999976433 4555667899999999999995 56888999
Q ss_pred CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCC-eeeEEee
Q 013436 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN-KLSLRIL 266 (443)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~ 266 (443)
.|+.+.|||++++ ....... ..+|..+|.|++|+| ++..||+|+.|++|.+||+++- +++..+.
T Consensus 248 dd~~L~iwD~R~~-~~~~~~~-------------~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e 313 (422)
T KOG0264|consen 248 DDGKLMIWDTRSN-TSKPSHS-------------VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE 313 (422)
T ss_pred CCCeEEEEEcCCC-CCCCccc-------------ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc
Confidence 9999999999974 1111111 125788999999999 6678999999999999999885 5778899
Q ss_pred ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC----------CCceeeeecCCCCCeEEEEECCCCCE-EEEEe
Q 013436 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV----------KGKPAGVLMGHLEGITFIDSRGDGRY-LISNG 335 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~ 335 (443)
+|...|.++.|+|.....|++++.|+.+.+||+..... ..+.+..--||...|..++|+|+..+ |++.+
T Consensus 314 ~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 314 GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 99999999999999999999999999999999974321 12344566689999999999998765 56888
Q ss_pred CCCCEEEEeCCC
Q 013436 336 KDQAIKLWDIRK 347 (443)
Q Consensus 336 ~dg~i~iwd~~~ 347 (443)
.|+.+.||+...
T Consensus 394 eDN~LqIW~~s~ 405 (422)
T KOG0264|consen 394 EDNILQIWQMAE 405 (422)
T ss_pred CCceEEEeeccc
Confidence 899999999874
No 102
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-24 Score=179.45 Aligned_cols=283 Identities=14% Similarity=0.111 Sum_probs=196.0
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCC-eEEEEeeecCCccceEEEEEECC--CCCeEEEEECCCeEEEEE
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~iwd 197 (443)
.+|.+-|.|+.|.+-|+.+|+|+.|++|+|||.... ...........|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 578899999999999999999999999999996443 22233334567888999999965 389999999999999998
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeC--CCCEEEEEecCCeEEEEECCCCe------eeEEee---
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANK------LSLRIL--- 266 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~--- 266 (443)
-.............. ..........|+++.|.| -|-.+++++.||.|+||+.-... ....+.
T Consensus 90 E~~~~~~~~~~~Wv~-------~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVR-------RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred ecccccccccceeEE-------EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence 532111110000000 000112334799999999 56789999999999999865432 222222
Q ss_pred ----ccCCCeEEEEEeCC--CCCEEEEeeCC-----CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC----CCEE
Q 013436 267 ----AHTSDVNTVCFGDE--SGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD----GRYL 331 (443)
Q Consensus 267 ----~~~~~v~~i~~~~~--~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l 331 (443)
.+..+..|+.|++. ...+|+.|+.+ +.+.||...........+..+.+|..+|+.|+|.|+ -.+|
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 46678899999843 24578888876 578999876443345567788899999999999995 3578
Q ss_pred EEEeCCCCEEEEeCCCCCCccccCC-cccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCc
Q 013436 332 ISNGKDQAIKLWDIRKMSSNASCNL-GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (443)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 410 (443)
|+++.|| |+||.++.......... ..... +.--.-+.+..+.+|.. .+-++.|.. .|
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~---------------~~~l~v~~vs~~~~H~~--~VWrv~wNm----tG 300 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDL---------------MTDLPVEKVSELDDHNG--EVWRVRWNM----TG 300 (361)
T ss_pred EEeecCc-EEEEEEeeccchhhhhcccCCCC---------------ccccceEEeeeccCCCC--ceEEEEEee----ee
Confidence 9999999 99999986332111000 00000 00011245667778873 444556666 59
Q ss_pred cEEEEeeCCCeEEEEEccChhh
Q 013436 411 KYIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 411 ~~l~tg~~dg~v~iwd~~~g~~ 432 (443)
..|++.|.||+|++|...-..+
T Consensus 301 tiLsStGdDG~VRLWkany~n~ 322 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWKANYNNL 322 (361)
T ss_pred eEEeecCCCceeeehhhhhhhh
Confidence 9999999999999998654443
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=197.62 Aligned_cols=247 Identities=21% Similarity=0.276 Sum_probs=186.7
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEE---------EEeeecCCccceEEEEEECCCC-CeEEEEECCCeE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI---------QKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIV 193 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~---------~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i 193 (443)
...|.+++|++.|..|++.+.....+|+|-+..... .......+|...+++.+|+|+. ..+++++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 457999999999999888888889999997653222 2233456899999999999975 578899999999
Q ss_pred EEEECCCCcee-ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe--e-eEEeeccC
Q 013436 194 HIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--L-SLRILAHT 269 (443)
Q Consensus 194 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~--~-~~~~~~~~ 269 (443)
+|||++..+.. .++.. ....+..-+++.++|++||+.||+|..||.|.+|+..+.. + ...-.+|.
T Consensus 294 RiWdv~~~k~q~qVik~-----------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~ 362 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKT-----------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL 362 (641)
T ss_pred EEEecCCchhheeEEee-----------ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccC
Confidence 99999865421 11111 1122344479999999999999999999999999975432 1 22334777
Q ss_pred C--CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC--CCeEEEEECCCCCEEEEEeC------CCC
Q 013436 270 S--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL--EGITFIDSRGDGRYLISNGK------DQA 339 (443)
Q Consensus 270 ~--~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~------dg~ 339 (443)
. .|+||.|+ .+|++|++-+.|+++++||+|. ..+++....+.. -+-+.++|+|+.++|++|.. .|.
T Consensus 363 ~g~~Itsi~FS-~dg~~LlSRg~D~tLKvWDLrq---~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 363 PGQDITSISFS-YDGNYLLSRGFDDTLKVWDLRQ---FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred CCCceeEEEec-cccchhhhccCCCceeeeeccc---cccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCce
Confidence 6 99999998 9999999999999999999994 345666555443 34577899999999999874 467
Q ss_pred EEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCC
Q 013436 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (443)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~d 419 (443)
+.+||..+.. .+..+.-. ...+.++.|+|. =+.|+.|+.|
T Consensus 439 L~f~d~~t~d----------------------------------~v~ki~i~--~aSvv~~~Whpk----LNQi~~gsgd 478 (641)
T KOG0772|consen 439 LFFFDRMTLD----------------------------------TVYKIDIS--TASVVRCLWHPK----LNQIFAGSGD 478 (641)
T ss_pred EEEEecccee----------------------------------eEEEecCC--CceEEEEeecch----hhheeeecCC
Confidence 9999988732 23333222 356778888874 5678889999
Q ss_pred CeEEEE
Q 013436 420 SCVYVY 425 (443)
Q Consensus 420 g~v~iw 425 (443)
|.+++|
T Consensus 479 G~~~vy 484 (641)
T KOG0772|consen 479 GTAHVY 484 (641)
T ss_pred CceEEE
Confidence 999986
No 104
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=185.94 Aligned_cols=210 Identities=20% Similarity=0.299 Sum_probs=171.7
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
+.+..|.++|+++.|+|....|++|+.|++|++||+...... +....-....+|.++.|+|.|.+|++|.....+++||
T Consensus 166 RTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK-rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYd 244 (430)
T KOG0640|consen 166 RTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK-RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYD 244 (430)
T ss_pred eehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHH-HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEe
Confidence 466789999999999999999999999999999999764211 1111223345799999999999999999999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee-ccC-CCeEEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHT-SDVNTV 275 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~v~~i 275 (443)
+++-++....+ ++.+|+..|+++.+++.+++.++|+.||.|++||--+++++.++. +|. ..|.+.
T Consensus 245 v~T~Qcfvsan-------------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 245 VNTYQCFVSAN-------------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA 311 (430)
T ss_pred ccceeEeeecC-------------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence 99987754433 334688899999999999999999999999999999999988876 454 468888
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec------------------------------------------
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM------------------------------------------ 313 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------------------------------------ 313 (443)
.|. .+++++++.+.|..+++|.+. ++.++..+.
T Consensus 312 ~Ft-kn~kyiLsSG~DS~vkLWEi~----t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad 386 (430)
T KOG0640|consen 312 VFT-KNGKYILSSGKDSTVKLWEIS----TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD 386 (430)
T ss_pred EEc-cCCeEEeecCCcceeeeeeec----CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh
Confidence 887 999999999999999999987 433333332
Q ss_pred -------CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 314 -------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 314 -------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
+|.+.+..+.-+|.+.-+.+|+.|-.+++|--+
T Consensus 387 r~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 387 RVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 467777788888888888888888888888654
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.1e-24 Score=189.28 Aligned_cols=202 Identities=18% Similarity=0.243 Sum_probs=171.4
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
.+|...+.+++.|+||++||+|+.|..|.||+.++.+.++ ...+|.+.|.+++|-.....|++++.|..|++|+++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 4899999999999999999999999999999999986655 3689999999999988888899999999999999987
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCC
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (443)
.......- ||...|..+....-++.+-+|+.|.++++|++... ....+.++.+.+-|++|.
T Consensus 276 ~s~vetly----------------GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~I-- 336 (479)
T KOG0299|consen 276 LSYVETLY----------------GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFI-- 336 (479)
T ss_pred hHHHHHHh----------------CCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEe--
Confidence 66543322 67789999988888888888889999999999443 345667899999999995
Q ss_pred CCCEEEEeeCCCeEEEEecccCCCCCceeeeec-CC-----------CCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GH-----------LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 281 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~-----------~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
+...+++|+.||.|.+|++. ..+++.+.. .| ...|++++..|...++++|+.+|.|++|-+..+
T Consensus 337 n~~HfvsGSdnG~IaLWs~~----KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 337 NDEHFVSGSDNGSIALWSLL----KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccceeeccCCceEEEeeec----ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 56678999999999999997 556655432 12 237899999999999999999999999999874
No 106
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.3e-25 Score=191.63 Aligned_cols=250 Identities=19% Similarity=0.228 Sum_probs=188.4
Q ss_pred eEEEEECCC-------CCEEEEEECCCeEEEEECCCCeEEE------------------EeeecCCccceEEEEEECCC-
Q 013436 127 AYVSQFSAD-------GSLFVAGFQASQIRIYDVERGWKIQ------------------KDILAKSLRWTVTDTSLSPD- 180 (443)
Q Consensus 127 v~~~~~s~~-------~~~l~~g~~d~~i~iwd~~~~~~~~------------------~~~~~~~~~~~v~~i~~s~~- 180 (443)
-.|++|... |+++|.|+.|..|.|||+.--..+. +.....+|+..|.+++|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 356666532 5899999999999999986321111 11223478888999999876
Q ss_pred CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCC
Q 013436 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN 259 (443)
Q Consensus 181 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~ 259 (443)
...||+|+.|.+|++||+.++++..... .|...|.+++|+| ....|++|+.|++|.+.|++..
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~----------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSIT----------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehh----------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 5688999999999999999998876654 2555899999999 5678999999999999999954
Q ss_pred eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC-CCEEEEEeCCC
Q 013436 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQ 338 (443)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg 338 (443)
......-...+.|-.++|.+.....++++..||+|+-+|+|. .++++.++..|.++|.+|++++. ..+|++++.|+
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~---~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN---PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCC---CCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence 333222244678999999988899999999999999999994 45999999999999999999875 45688999999
Q ss_pred CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCC-ccEEEEee
Q 013436 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGS 417 (443)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~tg~ 417 (443)
.|++|++..-++. ....|......+ ++.++.|+ --+++.||
T Consensus 397 ~Vklw~~~~~~~~-----------------------------------~v~~~~~~~~rl---~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 397 VVKLWKFDVDSPK-----------------------------------SVKEHSFKLGRL---HCFALDPDVAFTLAFGG 438 (463)
T ss_pred eEEEEeecCCCCc-----------------------------------ccccccccccce---eecccCCCcceEEEecC
Confidence 9999999863321 112222111111 11122233 34688888
Q ss_pred CCCeEEEEEccChhhh
Q 013436 418 HDSCVYVYDLVSIQIL 433 (443)
Q Consensus 418 ~dg~v~iwd~~~g~~~ 433 (443)
..+.++|||+.++..+
T Consensus 439 ~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 439 EKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceEEEeecccChhH
Confidence 8999999999987755
No 107
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=206.28 Aligned_cols=250 Identities=18% Similarity=0.275 Sum_probs=190.6
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEe----eecCCccceEEEEEECC-CCCeEEEEECCCeEEEEEC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD----ILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~ 198 (443)
...+.++...++-..++.++. ..+.||.+.......+. .........+.+++|+. +.++||+++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 345667777888888888866 46888877653221111 11112223466788875 4679999999999999999
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
...-........ ..|...+.++.|++ ...+|++|+.||+|++||++..+...++.+....|+.+.|
T Consensus 118 nk~~rnk~l~~f-------------~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 118 NKSIRNKLLTVF-------------NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF 184 (839)
T ss_pred CccccchhhhHh-------------hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceee
Confidence 863111111111 14777999999998 5578999999999999999999988899899999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCc
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (443)
+|..++.|+++.+.|.+.+||+| ....+...+.+|.++|.++.|+|++.+|||||.|++|+|||+...+.
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlR---qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~------- 254 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLR---QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA------- 254 (839)
T ss_pred ccCCCceEEEecCCceEEEeecc---CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-------
Confidence 99999999999999999999999 35678888999999999999999999999999999999999987432
Q ss_pred ccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee--CCCeEEEEEcc
Q 013436 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HDSCVYVYDLV 428 (443)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~--~dg~v~iwd~~ 428 (443)
..+.++.. ...+-++.|-|+. ...||+++ .|-.|+|||+.
T Consensus 255 -------------------------~~~~tInT---iapv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 255 -------------------------KPKHTINT---IAPVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred -------------------------cceeEEee---cceeeeeeeccCc---cchhhhhhccccceEEEEeec
Confidence 11222222 1244566788873 36678776 48889999986
No 108
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=3.6e-25 Score=192.09 Aligned_cols=273 Identities=18% Similarity=0.211 Sum_probs=210.3
Q ss_pred CccccCCCCceEEEEECCCC--CEEEEEECCCeEEEEECCCC-eEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCe
Q 013436 117 PWPVDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPI 192 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~--~~l~~g~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~ 192 (443)
..+..-+..+|++++|+|.. +++|+|...|.|-+||+.+. ...........|..+|.++.|+|. -..+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 34556789999999999965 58889999999999999532 223344566789999999999996 467889999999
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee-eEEeeccCCC
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSD 271 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~ 271 (443)
|++-|++++....+..... ....+.++.|+.+...++++..-|...+||+++++. ...+.-|...
T Consensus 259 iR~~D~~~~i~e~v~s~~~--------------d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDT--------------DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred eeeeeecchhhHHHhhcCc--------------cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 9999999887666655432 112577889998888888888888999999998764 5667788889
Q ss_pred eEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
|++|+++|....+|++++.|++++|||+|.......++.....|...|.+..|||.+-.|++.+.|..|+|||..-....
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence 99999999999999999999999999999765444344555679999999999998878999999999999998521100
Q ss_pred cccCCcccccCcccccccCCCCCCcccCCCCee-EEEEeccce--eeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS-VATYKGHSV--LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
... ......+.. ..+. |-..|.|+..++++|-.-..|-|+|-.
T Consensus 405 ------------------------------~~p~~~I~Hn~~t~RwlT~----fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 405 ------------------------------DEPLGTIPHNNRTGRWLTP----FKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred ------------------------------CCccceeeccCcccccccc----hhheeCCCccEEEEeccCcceeEEcCC
Confidence 011 111222221 1222 333455689999999999999999998
Q ss_pred ChhhhhHhH
Q 013436 429 SIQILFCRQ 437 (443)
Q Consensus 429 ~g~~~~~~~ 437 (443)
.++.+..+.
T Consensus 451 ~~q~v~el~ 459 (498)
T KOG4328|consen 451 GGQMVCELH 459 (498)
T ss_pred CCEEeeecc
Confidence 888666543
No 109
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=184.19 Aligned_cols=269 Identities=18% Similarity=0.242 Sum_probs=193.5
Q ss_pred cccCCCCceEEEEECCCC--CEEEEEECCCeEEEEECCCC-------------eEEEEeeecCCccceEEEEEECCC-CC
Q 013436 119 PVDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERG-------------WKIQKDILAKSLRWTVTDTSLSPD-QR 182 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~--~~l~~g~~d~~i~iwd~~~~-------------~~~~~~~~~~~~~~~v~~i~~s~~-~~ 182 (443)
....|.+.+..+.-++-+ .+.|+-+..|.|.||++... ..........+|...=++++|||- ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 345678888888887755 45666667899999998532 112234456678888899999993 23
Q ss_pred eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEecCCeEEEEECCCC--
Q 013436 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEAN-- 259 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~-- 259 (443)
.|++|..-+.|++|...++....-. .+..+|+..|..|+|||. ...|++|+.||+|+|||++.+
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~-------------~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQ-------------RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred ccccCccccceEeeeeccCceeecC-------------ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 4788888889999999887653222 123468889999999994 468999999999999999988
Q ss_pred -eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC-CCEEEEEeCC
Q 013436 260 -KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKD 337 (443)
Q Consensus 260 -~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d 337 (443)
.++. .++|.+.|+.|.|+ ....+||+|+.||+++|||+|... .++++..+.-|..+|++|.|+|. ...|++++.|
T Consensus 293 ~~~~~-~kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~-~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 293 KAAVS-TKAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFK-SGQPVATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred cceeE-eeccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhcc-CCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence 3333 37999999999998 555699999999999999999876 56899999999999999999995 4678888899
Q ss_pred CCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee
Q 013436 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (443)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~ 417 (443)
.+|.|||+............ ....+.-...+.+.. |.....+..++|++. -..+|++.+
T Consensus 370 ~QitiWDlsvE~D~ee~~~~---------------a~~~L~dlPpQLLFV---HqGQke~KevhWH~Q---iPG~lvsTa 428 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQE---------------AAEGLQDLPPQLLFV---HQGQKEVKEVHWHRQ---IPGLLVSTA 428 (440)
T ss_pred CcEEEEEeeccCChhhhccc---------------cccchhcCCceeEEE---ecchhHhhhheeccC---CCCeEEEec
Confidence 99999999763321111000 000011111123333 333334455667765 356888888
Q ss_pred CCCeEEEE
Q 013436 418 HDSCVYVY 425 (443)
Q Consensus 418 ~dg~v~iw 425 (443)
.||. .||
T Consensus 429 ~dGf-nVf 435 (440)
T KOG0302|consen 429 IDGF-NVF 435 (440)
T ss_pred ccce-eEE
Confidence 9984 444
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.5e-24 Score=199.55 Aligned_cols=246 Identities=17% Similarity=0.222 Sum_probs=195.6
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
..|...-+.++|.|+|.+|++++.||.|++|+.......... ...+...|.+++- ++.+|++++.+++|.+|.+..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t--i~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET--IDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch--hhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 467888999999999999999999999999997765222221 2225556777765 456899999999999999998
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCC
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (443)
++...+... ...++.+++|+-+|++++.|+.|-.|++.++........+++|..+|.++.|+ |
T Consensus 86 ~~~~~iL~R----------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p 148 (933)
T KOG1274|consen 86 GEEDTILAR----------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-P 148 (933)
T ss_pred CCccceeee----------------eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc-C
Confidence 876533321 22389999999999999999999999999999999899999999999999997 8
Q ss_pred CCCEEEEeeCCCeEEEEecccCCCCCceeeeecC--------CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcc
Q 013436 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--------HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (443)
Q Consensus 281 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (443)
.+++||+.+-||.|++||+. .+.....+.+ ....+..++|+|++..|+..+.|+.|++|+...+..
T Consensus 149 ~~~fLAvss~dG~v~iw~~~----~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~-- 222 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQ----DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL-- 222 (933)
T ss_pred CCCEEEEEecCceEEEEEcc----cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee--
Confidence 99999999999999999998 5554444432 134567899999988899899999999999988543
Q ss_pred ccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
...+...........+ .|||.|+|||+++.||.|.|||+.+
T Consensus 223 --------------------------------~f~Lr~~~~ss~~~~~----~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 223 --------------------------------QFKLRDKLSSSKFSDL----QWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred --------------------------------heeecccccccceEEE----EEcCCCcEEeeeccCCcEEEEeccc
Confidence 3344332222222233 3666899999999999999999986
No 111
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.6e-24 Score=178.38 Aligned_cols=266 Identities=18% Similarity=0.272 Sum_probs=194.5
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceecc
Q 013436 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 206 (443)
..|+.|++.|.+||+|+.||.|.|||+.+.. +. .....|..+|++++||+||+.|++++.|..|.+||+..+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-ia--r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IA--RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hh--hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 8899999999999999999999999999863 22 24667888999999999999999999999999999999886554
Q ss_pred ccceecccCceeeccCC------------------------------CCceecEEEEEEeCCCCEEEEEecCCeEEEEEC
Q 013436 207 ANVTEIHDGLDFSAADD------------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~------------------------------~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 256 (443)
..+....-+..+-+... +.-.....+..|.+.|+++++|...|.+.++|.
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 44332221111111000 011111223357788999999999999999999
Q ss_pred CCCeeeEEeeccC-CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCC-----ceeeeecC--CCCCeEEEEECCCC
Q 013436 257 EANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-----KPAGVLMG--HLEGITFIDSRGDG 328 (443)
Q Consensus 257 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~--~~~~v~~~~~~~~~ 328 (443)
.+.+++..++... ..|..+.++ ..+..|+.-+.|..|+.|+++.....+ ++.+.++. ....-.+++|+.+|
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred chheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 9999998887665 789999996 999999999999999999987432111 11122221 22345678899999
Q ss_pred CEEEEEeC-CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCcc
Q 013436 329 RYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (443)
Q Consensus 329 ~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (443)
.|+++++. -..++||.-.. +..++.+.|... ...+.+.|+|.
T Consensus 262 eYv~a~s~~aHaLYIWE~~~----------------------------------GsLVKILhG~kg-E~l~DV~whp~-- 304 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSI----------------------------------GSLVKILHGTKG-EELLDVNWHPV-- 304 (405)
T ss_pred cEEEeccccceeEEEEecCC----------------------------------cceeeeecCCch-hheeecccccc--
Confidence 99987764 56799999887 566777777653 23344456663
Q ss_pred CCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 408 TGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 408 ~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
...+++- ..|.|+||....-+.-..|
T Consensus 305 --rp~i~si-~sg~v~iw~~~~~enwsaf 330 (405)
T KOG1273|consen 305 --RPIIASI-ASGVVYIWAVVQVENWSAF 330 (405)
T ss_pred --eeeeeec-cCCceEEEEeecccchhhc
Confidence 4456665 7899999998765544333
No 112
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=9.9e-25 Score=195.24 Aligned_cols=277 Identities=15% Similarity=0.188 Sum_probs=202.0
Q ss_pred ccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC--eEEEEE
Q 013436 111 YLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYAS 188 (443)
Q Consensus 111 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~~~~ 188 (443)
.+|..+...+.+|++.|.|+...|.|.+||+|+.||+|+||.+.+|.++....... .|.+++|+|.+. .||++-
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEEe
Confidence 35677778889999999999999999999999999999999999999888765443 488888888654 333322
Q ss_pred CC--------------------------------CeEEEEECCC---Cc---eeccc------cceecccC-ceeec---
Q 013436 189 MS--------------------------------PIVHIVDVGS---GT---MESLA------NVTEIHDG-LDFSA--- 220 (443)
Q Consensus 189 ~d--------------------------------g~i~iwd~~~---~~---~~~~~------~~~~~~~~-~~~~~--- 220 (443)
.. +.+..|.-.. .+ +..+. ++.--..| .-...
T Consensus 463 ~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~ 542 (733)
T KOG0650|consen 463 GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD 542 (733)
T ss_pred cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC
Confidence 21 1223343220 00 11111 00000000 00000
Q ss_pred -----------------cCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCC
Q 013436 221 -----------------ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (443)
Q Consensus 221 -----------------~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (443)
.......+.|.++.|+|...+|++++.. .|+|||+.....++.+......|..++.+ +.|.
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msih-p~GD 620 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIH-PNGD 620 (733)
T ss_pred CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeec-CCCC
Confidence 0111234468899999999989888754 59999999988888887777889999998 7788
Q ss_pred EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCc
Q 013436 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (443)
-|+.|+.|+.+..+|+. ...++.+.+..|...+++++|++.-.+|++|+.||++.|+.-+-..
T Consensus 621 nli~gs~d~k~~WfDld---lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~-------------- 683 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLD---LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN-------------- 683 (733)
T ss_pred eEEEecCCCeeEEEEcc---cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh--------------
Confidence 88899999999999997 3567888889999999999999999999999999999999755422
Q ss_pred ccccccCCCCCCcccCCCCeeEEEEecccee--eeeeEEEecCCccCCccEEEEeeCCCeEEEE
Q 013436 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVL--RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 425 (443)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iw 425 (443)
..+..|.--++..+.+|... ..++.+.|+| ...+|++++.||+|++|
T Consensus 684 -----------Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP----~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 684 -----------DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP----RQPWLFSAGADGTIRLF 732 (733)
T ss_pred -----------hhhcCCceEeeeeccCceeecccceEeecccC----CCceEEecCCCceEEee
Confidence 11223334567888999854 3355555555 79999999999999998
No 113
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1e-24 Score=189.73 Aligned_cols=223 Identities=19% Similarity=0.222 Sum_probs=182.0
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
.-..++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. ....|-..|+++.|+-|+.+|++|+.||.|.+|.+..
T Consensus 78 ~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 78 IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 3457889999999999999999999999999999996555 3467888999999999999999999999999999753
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCC--CCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEe
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (443)
--.... +..........+|.-+|+++...+. ..++++++.|.++++||+..+..+.++ .....+.+++..
T Consensus 155 lv~a~~-------~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp~si~av~lD 226 (476)
T KOG0646|consen 155 LVSADN-------DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFPSSIKAVALD 226 (476)
T ss_pred eccccc-------CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecCCcceeEEEc
Confidence 211000 0011111223468889999998874 358999999999999999999988777 457789999995
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCC------------CCCceeeeecCCCC--CeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLN------------VKGKPAGVLMGHLE--GITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
|.+..+++|+.+|.|.+.++.... ..+..+..+.+|.. .|+|++++-||..|++|+.||.|+|||
T Consensus 227 -pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 227 -PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred -ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 889999999999999998876433 23456677889988 999999999999999999999999999
Q ss_pred CCCCCCccccC
Q 013436 345 IRKMSSNASCN 355 (443)
Q Consensus 345 ~~~~~~~~~~~ 355 (443)
+.+.+++....
T Consensus 306 i~S~Q~iRtl~ 316 (476)
T KOG0646|consen 306 IYSKQCIRTLQ 316 (476)
T ss_pred cchHHHHHHHh
Confidence 99977665543
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.7e-24 Score=195.67 Aligned_cols=236 Identities=17% Similarity=0.240 Sum_probs=193.6
Q ss_pred ccccCCCCceEE-EEECC-CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 118 WPVDQTTSRAYV-SQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 118 ~~~~~h~~~v~~-~~~s~-~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
..+.+|.+-|.+ +++.+ ++-.+++|+.|..|.+|.+.....+. .+.+|...|.++....++. +++|+.|.++++
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~-~iSgSWD~Takv 126 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKV 126 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc-eEecccccceEE
Confidence 456778888887 88886 45569999999999999999875554 6889999999999888877 999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 275 (443)
|........ ..+|...|++++.-|++ .+++|+.|.+|++|.- ++.++++.+|.+-|+.+
T Consensus 127 W~~~~l~~~------------------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL 185 (745)
T KOG0301|consen 127 WRIGELVYS------------------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGL 185 (745)
T ss_pred ecchhhhcc------------------cCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhheeee
Confidence 987543221 12688899999999988 7999999999999984 78889999999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccC
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (443)
++- + +..|++++.||.|++|++ .++++....+|..-|.+++..+++..+++++.|++++||+...
T Consensus 186 ~vl-~-~~~flScsNDg~Ir~w~~-----~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e-------- 250 (745)
T KOG0301|consen 186 AVL-D-DSHFLSCSNDGSIRLWDL-----DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE-------- 250 (745)
T ss_pred EEe-c-CCCeEeecCCceEEEEec-----cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc--------
Confidence 996 3 335789999999999999 6899999999999999999888888999999999999998763
Q ss_pred CcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
+.+.+.-.. ..+|+..+-++|. |++|+.||.||||...
T Consensus 251 ----------------------------~~q~I~lPt------tsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 251 ----------------------------CVQVITLPT------TSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ----------------------------eEEEEecCc------cceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 233332222 1234444444555 8999999999999876
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.5e-25 Score=204.65 Aligned_cols=246 Identities=17% Similarity=0.242 Sum_probs=186.0
Q ss_pred ceEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCeEEEEECCCCce
Q 013436 126 RAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 126 ~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
.+..+.|+. +.++|||++..|.|.+||+.....-........|...++++.|++. ..+|++|+.||.|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 355667774 4589999999999999999873222233356789999999999986 56888999999999999998766
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCC-eeeEEeeccCCCeEEEEEeCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDES 281 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~ 281 (443)
...... ....|.+++|+| .+..|+++.+.|.+.+||++.. ++...+.+|.++|.|+.|+ |+
T Consensus 169 ~~t~~~----------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwh-Pn 231 (839)
T KOG0269|consen 169 KSTFRS----------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWH-PN 231 (839)
T ss_pred cccccc----------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeec-CC
Confidence 544432 233799999999 6788999999999999999876 5667788999999999999 59
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCE-EEEEeC--CCCEEEEeCCCCCCccccCCcc
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY-LISNGK--DQAIKLWDIRKMSSNASCNLGF 358 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~--dg~i~iwd~~~~~~~~~~~~~~ 358 (443)
..+||+|+.|+.|+|||+... ....+.++. ...+|..+.|.|..++ |++++. |-.|+|||++.+-
T Consensus 232 r~~lATGGRDK~vkiWd~t~~--~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY--------- 299 (839)
T KOG0269|consen 232 REWLATGGRDKMVKIWDMTDS--RAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY--------- 299 (839)
T ss_pred CceeeecCCCccEEEEeccCC--CccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc---------
Confidence 999999999999999999732 223333332 3468999999997665 555554 7889999999843
Q ss_pred cccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
-+..+|..|....+. ++|.- .|-..+.+++.||.|..-.+.+
T Consensus 300 ------------------------IP~~t~~eH~~~vt~--i~W~~---~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 300 ------------------------IPYATFLEHTDSVTG--IAWDS---GDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ------------------------ccceeeeccCccccc--eeccC---CCceeeEeecCccHHHHhhhhc
Confidence 224567777754443 33433 2566788888888776554443
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.9e-24 Score=178.27 Aligned_cols=275 Identities=17% Similarity=0.209 Sum_probs=214.7
Q ss_pred cccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECC------C-----C-------------
Q 013436 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE------R-----G------------- 156 (443)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~------~-----~------------- 156 (443)
+++....+|.+-...+...+.||.+.|++++|++.+.++++++.|++-.||... . +
T Consensus 167 SADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~ 246 (481)
T KOG0300|consen 167 SADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEH 246 (481)
T ss_pred ccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccc
Confidence 456667788888889999999999999999999999999999999999999721 1 0
Q ss_pred ------------eEE-EEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCC
Q 013436 157 ------------WKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (443)
Q Consensus 157 ------------~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (443)
..+ .....+.+|...|.+..|-..++.+++++.|.+..+||+++++......
T Consensus 247 ~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt--------------- 311 (481)
T KOG0300|consen 247 NRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT--------------- 311 (481)
T ss_pred ccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc---------------
Confidence 011 1223456788899999999999999999999999999999998866544
Q ss_pred CCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccC
Q 013436 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302 (443)
Q Consensus 224 ~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~ 302 (443)
||....+.++-+|..+++++.+.|.+.++||++.. ..+..|.+|...|+++.|+ .+..+++|++|.+|++||++.+
T Consensus 312 -GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~--~dd~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 312 -GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN--TDDRVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred -CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe--cCCceeecCCCceEEEeeeccc
Confidence 68889999999999999999999999999999854 4567788999999999996 4556889999999999999943
Q ss_pred CCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCC
Q 013436 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 382 (443)
Q Consensus 303 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (443)
..++.++. ...+++.++.+..+..++.--.+..|++||++..+....
T Consensus 389 ---RsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl----------------------------- 435 (481)
T KOG0300|consen 389 ---RSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL----------------------------- 435 (481)
T ss_pred ---cCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccC-----------------------------
Confidence 24455554 457899999998888888888889999999987432111
Q ss_pred eeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 383 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
+...-++|.. .+..+.|.-. .| -.-|+++|-|..+.=|+++..+
T Consensus 436 -PrtsRqgHrR--MV~c~AW~ee-hp-~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 436 -PRTSRQGHRR--MVTCCAWLEE-HP-ACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred -Ccccccccce--eeeeeecccc-Cc-ccccccccccceeeeeEecccC
Confidence 0113345653 2333344321 11 2458999999999999987643
No 117
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=4.4e-24 Score=194.82 Aligned_cols=303 Identities=21% Similarity=0.215 Sum_probs=214.7
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC-----------CCeEEEEECCCeEEE
Q 013436 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----------QRHLVYASMSPIVHI 195 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-----------~~~l~~~~~dg~i~i 195 (443)
..++.|++....|.+-..|..++|||+.+-.++.+....-.|..-|+++.--|- ...+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 467889999999999999999999999987666666666667777777765441 125889999999999
Q ss_pred EECCCCceeccccceeccc----------Cc-----------eeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEE
Q 013436 196 VDVGSGTMESLANVTEIHD----------GL-----------DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iw 254 (443)
|++..+..-.+..-.-... .. .-.....-+...++.+++.+|+|++|++|..-|.++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9998743222211000000 00 00000112345689999999999999999999999999
Q ss_pred ECCCCeeeEEeeccCCCeEEEEEeCCC--CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC--CE
Q 013436 255 DLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RY 330 (443)
Q Consensus 255 d~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ 330 (443)
|+..-+....+.+|...|.|+.|+.+. .++|++++.|..|+|||+. .+..++.++.+|...|+++.|-.+| ..
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~---rny~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK---RNYDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc---cccchhhhhcccccceeEEEEeecCCceE
Confidence 999999889999999999999998543 4689999999999999987 3667788889999999999987766 67
Q ss_pred EEEEeCCCCEEEEeCCCCCCccccCCccc-ccCcccccccC------------CCCCCcccCCCCeeEEEEecccee-ee
Q 013436 331 LISNGKDQAIKLWDIRKMSSNASCNLGFR-SYEWDYRWMDY------------PPQARDLKHPCDQSVATYKGHSVL-RT 396 (443)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~ 396 (443)
+++++.|..|.+=-.+.......+..... ...-....|.. ..+.+.+....++..+.|++.... ..
T Consensus 564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence 88888887665543332222111111100 00001111222 222334445557778888875543 66
Q ss_pred eeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 397 ~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
.+.+...| .|-|||+.+.|.++.|+|+.+|+++.+.
T Consensus 644 lIKv~lDP----SgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 644 LIKVILDP----SGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred eEEEEECC----CccEEEEeecCCceEEEEeccchhhhhh
Confidence 77777666 6999999999999999999999988764
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.7e-24 Score=197.01 Aligned_cols=248 Identities=17% Similarity=0.271 Sum_probs=200.6
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEE-EEECC-CCCeEEEEECCCeEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSP-DQRHLVYASMSPIVH 194 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-i~~s~-~~~~l~~~~~dg~i~ 194 (443)
...+.+|...|..+++.+.. .+++++.||++++|+-..++.+.. ....+|.+-|.. +++-+ ++-.|++|+.|..|.
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccc-eecccCcceeeccceeccccCcceEeecccceEE
Confidence 45688999999999877554 799999999999999866544332 334455555555 77775 445699999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEE
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 274 (443)
+|...+........ ||...|.++....++. +++||.|.++++|-. +++...+.+|+..|.+
T Consensus 85 v~~~~~~~P~~~Lk----------------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLK----------------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred EEecCCCCchhhhh----------------ccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence 99998877655443 6888999999887777 999999999999975 4556668999999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
+... +.+ .+++|+.|.+|++|. .++.++++.+|..-|..+++-+++ .|++++.||.|++|++.
T Consensus 146 v~~l-~e~-~~vTgsaDKtIklWk------~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~-------- 208 (745)
T KOG0301|consen 146 VASL-PEN-TYVTGSADKTIKLWK------GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD-------- 208 (745)
T ss_pred eeec-CCC-cEEeccCcceeeecc------CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc--------
Confidence 9987 444 788999999999998 468899999999999999998765 48899999999999994
Q ss_pred CCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
++.+.++.+|......+. ...++..++++++|++++||+.. +++.
T Consensus 209 ---------------------------ge~l~~~~ghtn~vYsis------~~~~~~~Ivs~gEDrtlriW~~~--e~~q 253 (745)
T KOG0301|consen 209 ---------------------------GEVLLEMHGHTNFVYSIS------MALSDGLIVSTGEDRTLRIWKKD--ECVQ 253 (745)
T ss_pred ---------------------------CceeeeeeccceEEEEEE------ecCCCCeEEEecCCceEEEeecC--ceEE
Confidence 477999999996655554 33468899999999999999975 5444
Q ss_pred HhH
Q 013436 435 CRQ 437 (443)
Q Consensus 435 ~~~ 437 (443)
+++
T Consensus 254 ~I~ 256 (745)
T KOG0301|consen 254 VIT 256 (745)
T ss_pred EEe
Confidence 443
No 119
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=4.6e-24 Score=177.48 Aligned_cols=257 Identities=22% Similarity=0.299 Sum_probs=191.9
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCe-------EE--EE-eeecCCccceEEEEEEC-------CCCCeEEEEEC
Q 013436 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGW-------KI--QK-DILAKSLRWTVTDTSLS-------PDQRHLVYASM 189 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~-------~~--~~-~~~~~~~~~~v~~i~~s-------~~~~~l~~~~~ 189 (443)
...+.|||||..|++-+.|..+.+|++.... .+ .+ ..........|...+|- |+..++++.++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 3467899999999999999999999985320 00 00 00011223357777774 57789999999
Q ss_pred CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEEC-CCCeee--EEe-
Q 013436 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLS--LRI- 265 (443)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~--~~~- 265 (443)
+.-|++||.-+++...........+. -....+++|+|||..|++|. ..+|+++|+ +.|... ...
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de-----------~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDE-----------YTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHh-----------hhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh
Confidence 99999999999988766554332111 11567899999999998885 668999999 544321 111
Q ss_pred ----eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC-CCCE
Q 013436 266 ----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAI 340 (443)
Q Consensus 266 ----~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i 340 (443)
.+..+-+.+++|+|.+...+++|+....+-||.-. ...++..+-+|.+.|+.+.|.++|+.|.+|+. |..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~----~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD----GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecC----CCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 13467789999998888999999999998888876 77889999999999999999999999999986 7789
Q ss_pred EEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCC
Q 013436 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 420 (443)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg 420 (443)
..||+|... ..+..+..|.. .+.-++.|. ..|++++|++|+.||
T Consensus 276 l~WDiR~~~---------------------------------~pv~~L~rhv~-~TNQRI~FD--ld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 276 LCWDIRYSR---------------------------------DPVYALERHVG-DTNQRILFD--LDPKGEILASGDTDG 319 (406)
T ss_pred EEEeehhcc---------------------------------chhhhhhhhcc-CccceEEEe--cCCCCceeeccCCCc
Confidence 999999842 33445555543 133345554 346899999999999
Q ss_pred eEEEEEccC-hhhhhH
Q 013436 421 CVYVYDLVS-IQILFC 435 (443)
Q Consensus 421 ~v~iwd~~~-g~~~~~ 435 (443)
.|++||+.. |+.+..
T Consensus 320 ~V~vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 320 SVRVWDLKDLGNEVSV 335 (406)
T ss_pred cEEEEecCCCCCcccc
Confidence 999999987 664443
No 120
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=8.1e-25 Score=191.93 Aligned_cols=255 Identities=16% Similarity=0.227 Sum_probs=202.1
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEE--eeecCCccceEEEEEECCCCCeEEEEECCCeEEEEEC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK--DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 198 (443)
..|..-|.++.+|...++++||+. |.|+|||+........ ..........|.++.++|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 368888999999999999999977 7799999975321111 1112223456999999999999999999999999999
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEe
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (443)
..........+.... -....++.+||.+..+++..||.|.|||+.+...++.+.+|.+.+.||.++
T Consensus 495 AapTprikaeltssa--------------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSA--------------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred cCCCcchhhhcCCcc--------------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 877654333332211 157789999999999999999999999999999999999999999999997
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcc
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (443)
++|..|-+|+-|++|+.||+| .+..+... .....|.++...|++.+|+.|-.++.+.|-.....
T Consensus 561 -~dGtklWTGGlDntvRcWDlr----egrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp---------- 624 (705)
T KOG0639|consen 561 -KDGTKLWTGGLDNTVRCWDLR----EGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP---------- 624 (705)
T ss_pred -CCCceeecCCCccceeehhhh----hhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCc----------
Confidence 899999999999999999999 66555433 24678999999999999999999999988877762
Q ss_pred cccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhH
Q 013436 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~ 437 (443)
..|.-|.....++.+. |++-|+++++.+.|+.+..|..--|..++..+
T Consensus 625 ---------------------------~kyqlhlheScVLSlK----Fa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 625 ---------------------------EKYQLHLHESCVLSLK----FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred ---------------------------cceeecccccEEEEEE----ecccCceeeecCchhhhhhccCccccceeecc
Confidence 2333333334444444 44569999999999999999988887766543
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=3e-23 Score=192.55 Aligned_cols=321 Identities=16% Similarity=0.198 Sum_probs=229.3
Q ss_pred ccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC
Q 013436 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (443)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~ 181 (443)
.++...++++-..+..+.+.++.+.|+++.=+|-=..+|.|..+|+|.|+++..++.+..... ..++|+.++|..||
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~---d~g~VtslSFrtDG 256 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ---DWGRVTSLSFRTDG 256 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc---cccceeEEEeccCC
Confidence 445566778888888899999999999999999999999999999999999999977765432 24689999999998
Q ss_pred Ce-EEEEECCCeEEEEECCCCceecccccee--cccCceeec-----------------------------cCCCCceec
Q 013436 182 RH-LVYASMSPIVHIVDVGSGTMESLANVTE--IHDGLDFSA-----------------------------ADDGGYSFG 229 (443)
Q Consensus 182 ~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~-----------------------------~~~~~~~~~ 229 (443)
.. +++|+..|.+.+||++..+...+..... ...+..+.. ....||..+
T Consensus 257 ~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P 336 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP 336 (910)
T ss_pred CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence 74 5566777999999999877654332111 001111100 012578888
Q ss_pred EEEEEEe-CCCCEEEEEecCCeEEEEECC---------------------------------------------------
Q 013436 230 IFSLKFS-TDGRELVAGSSDDCIYVYDLE--------------------------------------------------- 257 (443)
Q Consensus 230 i~~l~~~-~~~~~l~~~~~dg~i~iwd~~--------------------------------------------------- 257 (443)
..++.|. .+|..+.+++.|++++.+++.
T Consensus 337 p~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~ 416 (910)
T KOG1539|consen 337 PSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVIT 416 (910)
T ss_pred chheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeE
Confidence 8888887 577788888888766665542
Q ss_pred --------------CCee-eEEee-----ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee---cC
Q 013436 258 --------------ANKL-SLRIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---MG 314 (443)
Q Consensus 258 --------------~~~~-~~~~~-----~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~ 314 (443)
.... ...+. .....+++++.+ ..|++.+.|...|.|-+|++. ++-....+ ..
T Consensus 417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQ----SGi~r~sf~~~~a 491 (910)
T KOG1539|consen 417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQ----SGIHRKSFGDSPA 491 (910)
T ss_pred EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcc----cCeeecccccCcc
Confidence 1111 00000 112467888887 899999999999999999998 77777777 58
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCccc----ccccCCC---CCCcccCCCCeeEEE
Q 013436 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY----RWMDYPP---QARDLKHPCDQSVAT 387 (443)
Q Consensus 315 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~ 387 (443)
|..+|+.++...-++.+++++.+|.+++||..+.........+.......+ ..+...- ....+...+.+.++.
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 999999999999999999999999999999998765544443322211111 0001111 111122233445677
Q ss_pred EeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 388 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
|.||...++.. +|||||++|++++.|++|++||+.+|.++-.+
T Consensus 572 f~gh~nritd~------~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 572 FWGHGNRITDM------TFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred hhccccceeee------EeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 78888655543 47789999999999999999999999987543
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=6.5e-24 Score=174.43 Aligned_cols=227 Identities=17% Similarity=0.265 Sum_probs=171.0
Q ss_pred CccceEEEEEECC-CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEE
Q 013436 167 SLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVA 244 (443)
Q Consensus 167 ~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~ 244 (443)
.|.+.|+++...+ .|+++++|+.||.|.+||++.............+..+ ....-..+|+..|.++.|-| |...|.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~-v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI-VAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee-ccccCCccceeeeeeeEEeeecCceeec
Confidence 4667788888877 5899999999999999999865422111111111111 11223457999999999999 7778999
Q ss_pred EecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCC--CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEE
Q 013436 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (443)
Q Consensus 245 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 322 (443)
++.|.++++||.++-+....+ ...+.|++-+++|-. .-++|+|..|-.|++.|+. ++..-+.+.+|...|.++
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----SGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred ccccceEEEeecccceeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc----CCcceeeeccccCceEEE
Confidence 999999999999998877666 346678888887533 3478888899999999999 999999999999999999
Q ss_pred EECCCCCE-EEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccce--------
Q 013436 323 DSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-------- 393 (443)
Q Consensus 323 ~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 393 (443)
.|+|...+ |++|+.||.|++||+|.... ++..+..|..
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasg---------------------------------cf~~lD~hn~k~~p~~~~ 241 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASG---------------------------------CFRVLDQHNTKRPPILKT 241 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccc---------------------------------eeEEeecccCccCccccc
Confidence 99997765 67899999999999998431 2222222220
Q ss_pred eeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhh
Q 013436 394 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 394 ~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~ 432 (443)
......-+++.+|+.|+.++++++.|..+++|+..+|+.
T Consensus 242 n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 242 NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred cccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 011122345566788999999999999999999998864
No 123
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.4e-24 Score=193.25 Aligned_cols=219 Identities=17% Similarity=0.243 Sum_probs=183.5
Q ss_pred cceeecccccCCCccccC-CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCe
Q 013436 105 CHMLSRYLPVNGPWPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 183 (443)
...+++....+....+.+ |...|-+++|. +..+.+|+.|+.|..+|+...+.... ...+|...|..++|++|+.+
T Consensus 240 ~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~~ 315 (484)
T KOG0305|consen 240 TVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGNQ 315 (484)
T ss_pred eEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCCe
Confidence 344556666677778888 99999999999 77899999999999999988755444 37789999999999999999
Q ss_pred EEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEE--ecCCeEEEEECCCCe
Q 013436 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAG--SSDDCIYVYDLEANK 260 (443)
Q Consensus 184 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~--~~dg~i~iwd~~~~~ 260 (443)
||+|+.|+.+.|||.........+ ..|...|..++|+| ....||+| +.|++|++||..+++
T Consensus 316 lASGgnDN~~~Iwd~~~~~p~~~~----------------~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 316 LASGGNDNVVFIWDGLSPEPKFTF----------------TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred eccCCCccceEeccCCCccccEEE----------------eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 999999999999999444332221 14888999999999 66788886 468999999999999
Q ss_pred eeEEeeccCCCeEEEEEeCCCCCEEEE-eeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCC
Q 013436 261 LSLRILAHTSDVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (443)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 339 (443)
.+..+. ..+.|.+|.|++....++.+ |..++.|.||+.. +.+.+..+.+|...|..++++|||..+++++.|.+
T Consensus 380 ~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p----s~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 380 RIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP----SMKLVAELLGHTSRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred Eecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc----ccceeeeecCCcceeEEEEECCCCCEEEEecccCc
Confidence 888774 46789999999555555554 4466799999998 78889999999999999999999999999999999
Q ss_pred EEEEeCCCC
Q 013436 340 IKLWDIRKM 348 (443)
Q Consensus 340 i~iwd~~~~ 348 (443)
+++|++-..
T Consensus 455 lrfw~~f~~ 463 (484)
T KOG0305|consen 455 LRFWNLFDE 463 (484)
T ss_pred EEeccccCC
Confidence 999998773
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.5e-24 Score=170.85 Aligned_cols=218 Identities=17% Similarity=0.236 Sum_probs=174.2
Q ss_pred CCCccccCCCCceEEEEECC--CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC--CCeEEEEECC
Q 013436 115 NGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMS 190 (443)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~--~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~~d 190 (443)
+....|.||.++|+.++|.. -|.+||+++.||.|.||.-.++ ...+......|...|++++|-|. |-.|++++.|
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 34567899999999999987 7999999999999999999888 44555566789999999999996 5688999999
Q ss_pred CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC---C-----------CEEEEEecCCeEEEEEC
Q 013436 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---G-----------RELVAGSSDDCIYVYDL 256 (443)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~-----------~~l~~~~~dg~i~iwd~ 256 (443)
|.|.|.+.+....-....+. ..|..+|++++|.|. | +.|++|+.|..|+||+.
T Consensus 126 G~vsvl~~~~~g~w~t~ki~-------------~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~ 192 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIV-------------FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKF 192 (299)
T ss_pred CcEEEEEEcCCCCccchhhh-------------hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeec
Confidence 99999998766222222222 146679999999985 4 56999999999999998
Q ss_pred CCCe--eeEEeeccCCCeEEEEEeCCCC---CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEE
Q 013436 257 EANK--LSLRILAHTSDVNTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331 (443)
Q Consensus 257 ~~~~--~~~~~~~~~~~v~~i~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 331 (443)
..++ .-.++.+|.+.|+.++|.|..+ ..|++++.||++.||-.+... ..-....+......+..+.|++.|+.|
T Consensus 193 ~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-e~wk~tll~~f~~~~w~vSWS~sGn~L 271 (299)
T KOG1332|consen 193 DSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-EPWKKTLLEEFPDVVWRVSWSLSGNIL 271 (299)
T ss_pred CCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc-CcccccccccCCcceEEEEEeccccEE
Confidence 8763 3345889999999999996553 589999999999999887211 112222334456789999999999999
Q ss_pred EEEeCCCCEEEEeCCC
Q 013436 332 ISNGKDQAIKLWDIRK 347 (443)
Q Consensus 332 ~s~~~dg~i~iwd~~~ 347 (443)
++++.|+.|.+|.-..
T Consensus 272 aVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 272 AVSGGDNKVTLWKENV 287 (299)
T ss_pred EEecCCcEEEEEEeCC
Confidence 9999999999996543
No 125
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.9e-22 Score=165.96 Aligned_cols=259 Identities=16% Similarity=0.215 Sum_probs=200.7
Q ss_pred cceeecccccCCCccccCCCCceEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC
Q 013436 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 182 (443)
...+-.....+....+.-+.-.|..++|......++.++. |.+|+..++.+.+.+. ...+|...|..++.+|-+.
T Consensus 37 sl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d 113 (311)
T KOG1446|consen 37 SLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD 113 (311)
T ss_pred eEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC
Confidence 3344455566666777777788999999988887777776 8899999999986665 4789999999999999999
Q ss_pred eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC--e
Q 013436 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--K 260 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~--~ 260 (443)
.+++++.|++|++||++..++....... .-..++|.|+|-++|++.....|++||++.- .
T Consensus 114 ~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------------~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg 175 (311)
T KOG1446|consen 114 TFLSSSLDKTVRLWDLRVKKCQGLLNLS------------------GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKG 175 (311)
T ss_pred eEEecccCCeEEeeEecCCCCceEEecC------------------CCcceeECCCCcEEEEecCCCeEEEEEecccCCC
Confidence 9999999999999999977765554433 2334799999999999988889999999864 2
Q ss_pred eeEEee---ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCe---EEEEECCCCCEEEEE
Q 013436 261 LSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI---TFIDSRGDGRYLISN 334 (443)
Q Consensus 261 ~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~s~ 334 (443)
+-.++. ......+.|.|+ ++|++|+.++..+.+++.|.- .|..+..+..+...- ....|+||++++++|
T Consensus 176 PF~tf~i~~~~~~ew~~l~FS-~dGK~iLlsT~~s~~~~lDAf----~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 176 PFTTFSITDNDEAEWTDLEFS-PDGKSILLSTNASFIYLLDAF----DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSG 250 (311)
T ss_pred CceeEccCCCCccceeeeEEc-CCCCEEEEEeCCCcEEEEEcc----CCcEeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence 333333 346678999998 999999999999999999987 788888887765433 567799999999999
Q ss_pred eCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEecc-ceeeeeeEEEecCCccCCccEE
Q 013436 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYI 413 (443)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~d~~~l 413 (443)
+.||+|.+|++++ +..+..+.+. .....+++ |+| . +.
T Consensus 251 s~dg~i~vw~~~t----------------------------------g~~v~~~~~~~~~~~~~~~--fnP----~--~~ 288 (311)
T KOG1446|consen 251 SDDGTIHVWNLET----------------------------------GKKVAVLRGPNGGPVSCVR--FNP----R--YA 288 (311)
T ss_pred cCCCcEEEEEcCC----------------------------------CcEeeEecCCCCCCccccc--cCC----c--ee
Confidence 9999999999988 5567777763 43333333 444 3 34
Q ss_pred EEeeCCCeEEEEEccChh
Q 013436 414 YTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 414 ~tg~~dg~v~iwd~~~g~ 431 (443)
.-.+.+..+.+|=....+
T Consensus 289 mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 289 MFVSASSNLVFWLPDEDA 306 (311)
T ss_pred eeeecCceEEEEeccccc
Confidence 444456678888665433
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=2.2e-22 Score=182.15 Aligned_cols=253 Identities=17% Similarity=0.166 Sum_probs=175.7
Q ss_pred CccccCCCCceEEEEECCCCCEE-EEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE-ECCCeEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVH 194 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l-~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~ 194 (443)
...+..+ ..+.+++|+|+++.+ ++++.++.|++||..+++...... .+. .+..++|+|+++.++++ +.++.|+
T Consensus 24 ~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~-~~~~~~~~~~g~~l~~~~~~~~~l~ 98 (300)
T TIGR03866 24 TRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---SGP-DPELFALHPNGKILYIANEDDNLVT 98 (300)
T ss_pred EEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---CCC-CccEEEECCCCCEEEEEcCCCCeEE
Confidence 3444444 346789999999876 566778999999999886554322 222 25678999999977655 4689999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC-eEEEEECCCCeeeEEeeccCCCeE
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVN 273 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~ 273 (443)
+||+.+.+....... ...+.+++|+|++.++++++.++ .+.+||..+++....+.. ...+.
T Consensus 99 ~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~ 160 (300)
T TIGR03866 99 VIDIETRKVLAEIPV-----------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPR 160 (300)
T ss_pred EEECCCCeEEeEeeC-----------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCcc
Confidence 999987654332211 11456799999999999988765 577889988876655432 34567
Q ss_pred EEEEeCCCCCEEE-EeeCCCeEEEEecccCCCCCceeeeecCCC-------CCeEEEEECCCCCEEEE-EeCCCCEEEEe
Q 013436 274 TVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-------EGITFIDSRGDGRYLIS-NGKDQAIKLWD 344 (443)
Q Consensus 274 ~i~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s-~~~dg~i~iwd 344 (443)
+++|+ +++++++ ++..++.|++||+. .++.+..+..+. .....++|+|+++++++ .+.++.+.+||
T Consensus 161 ~~~~s-~dg~~l~~~~~~~~~v~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 161 FAEFT-ADGKELWVSSEIGGTVSVIDVA----TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD 235 (300)
T ss_pred EEEEC-CCCCEEEEEcCCCCEEEEEEcC----cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence 88997 6777665 45569999999998 555555443221 12346889999998654 45567899999
Q ss_pred CCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEe-eCCCeEE
Q 013436 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-SHDSCVY 423 (443)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg-~~dg~v~ 423 (443)
+++.+ .+..+..+. ..+++.|+|+|++|+++ +.+|.|+
T Consensus 236 ~~~~~----------------------------------~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 236 AKTYE----------------------------------VLDYLLVGQ-------RVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred CCCCc----------------------------------EEEEEEeCC-------CcceEEECCCCCEEEEEcCCCCeEE
Confidence 98732 222221111 12344577799999886 4699999
Q ss_pred EEEccChhhhhHhHH
Q 013436 424 VYDLVSIQILFCRQS 438 (443)
Q Consensus 424 iwd~~~g~~~~~~~~ 438 (443)
+||+.+++.+..++.
T Consensus 275 v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 275 VIDVAALKVIKSIKV 289 (300)
T ss_pred EEECCCCcEEEEEEc
Confidence 999999998777653
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.8e-25 Score=202.02 Aligned_cols=211 Identities=17% Similarity=0.290 Sum_probs=188.8
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+. .+.+|..+|.++.|+++..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 4566788999999997788999999999999999987654433 3678999999999999999999999999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
++..+...... ||...+.++.|+|-+.+++.|+.|+.+.+||.+...+...+.+|...|..+.|
T Consensus 99 leeAk~vrtLt----------------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~l 162 (825)
T KOG0267|consen 99 LEEAKIVRTLT----------------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRL 162 (825)
T ss_pred hhhhhhhhhhh----------------ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEee
Confidence 99776544322 57778999999999999999999999999999988899999999999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcc
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (443)
+ |+|.++++|+.|..+++||.. .++....|..|.+.+..+.|+|..-++++|+.|+++++||+++...+.
T Consensus 163 s-P~Gr~v~~g~ed~tvki~d~~----agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 163 S-PDGRWVASGGEDNTVKIWDLT----AGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred c-CCCceeeccCCcceeeeeccc----ccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 7 999999999999999999998 899999999999999999999999999999999999999999854433
No 128
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.9e-23 Score=171.46 Aligned_cols=215 Identities=18% Similarity=0.240 Sum_probs=178.5
Q ss_pred eeecccccCCCccccCCCCceEEEEECCCCC--EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE
Q 013436 107 MLSRYLPVNGPWPVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 107 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 184 (443)
.+-.+........+..|.+.|+++.|.++-. .|++|+.||.|.+|+......+. ....|.+.|+.++.+|.+++-
T Consensus 66 ~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~---slK~H~~~Vt~lsiHPS~KLA 142 (362)
T KOG0294|consen 66 HIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK---SLKAHKGQVTDLSIHPSGKLA 142 (362)
T ss_pred EEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee---eecccccccceeEecCCCceE
Confidence 3444445555677889999999999999875 89999999999999998764443 567888889999999999999
Q ss_pred EEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 013436 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 264 (443)
++.+.|+.+++||+-.++.....++.. ..+.+.|+|.|.+++.+..++ |-+|-+.+.+....
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a~v~~L~~-----------------~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVAFVLNLKN-----------------KATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFRE 204 (362)
T ss_pred EEEcCCceeeeehhhcCccceeeccCC-----------------cceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhh
Confidence 999999999999999988766655543 234499999999999988776 99999888776555
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEE--CCCCCEEEEEeCCCCEEE
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS--RGDGRYLISNGKDQAIKL 342 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~i 342 (443)
+.. ...+.++.| .++..+++|+.|+.|.+||.. ...+...+.+|...|-.+.+ .|++.+|++++.||.|+|
T Consensus 205 i~~-~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~d----s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 205 IEN-PKRILCATF--LDGSELLVGGDNEWISLKDTD----SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred hhc-cccceeeee--cCCceEEEecCCceEEEeccC----CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 532 345667776 567789999999999999998 68899999999999999984 567889999999999999
Q ss_pred EeCCCCC
Q 013436 343 WDIRKMS 349 (443)
Q Consensus 343 wd~~~~~ 349 (443)
||++...
T Consensus 278 Wd~~~~~ 284 (362)
T KOG0294|consen 278 WDIDMET 284 (362)
T ss_pred EEccccc
Confidence 9998753
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.1e-23 Score=184.79 Aligned_cols=240 Identities=21% Similarity=0.278 Sum_probs=195.7
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
-..-|.++.+.|||+.|++|+.-.++.|||+.......+. .+....-.+.+++.+||.+..+++..||.|.|||+.+..
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprika-eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA-ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhh-hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 4667999999999999999999999999999875222221 122222357889999999999999999999999999887
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 282 (443)
.+..++ ||..++.||..++||..|-+|+-|.+|+.||+++++.+... ...+.|.++.++ +.+
T Consensus 543 ~Vrqfq----------------GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~c-P~~ 604 (705)
T KOG0639|consen 543 LVRQFQ----------------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYC-PTG 604 (705)
T ss_pred eeeccc----------------CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccC-CCc
Confidence 665544 68889999999999999999999999999999999866654 456789999998 889
Q ss_pred CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccC
Q 013436 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 362 (443)
Q Consensus 283 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (443)
.++++|-.++.+.|... ++.....+..|..-|.++.|.+.|+++++.+.|+.+..|...-+
T Consensus 605 dWlavGMens~vevlh~-----skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG-------------- 665 (705)
T KOG0639|consen 605 DWLAVGMENSNVEVLHT-----SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-------------- 665 (705)
T ss_pred cceeeecccCcEEEEec-----CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccc--------------
Confidence 99999999999988877 45566677789999999999999999999999999999987663
Q ss_pred cccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEc
Q 013436 363 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~ 427 (443)
..+...+... .++.| ++|.|.+||+||+.|....+|.+
T Consensus 666 --------------------asiFqskE~S---sVlsC----DIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 666 --------------------ASIFQSKESS---SVLSC----DISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred --------------------cceeeccccC---cceee----eeccCceEEEecCCCcceEEEEE
Confidence 3333333322 33333 45568999999999999888875
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.7e-25 Score=202.93 Aligned_cols=233 Identities=24% Similarity=0.366 Sum_probs=193.8
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccC
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (443)
+.+++.+..+-.+++||... ...|...|.++..-..++.+++|+.|..+-+|.+.....+..
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~---------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S--------- 65 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE---------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS--------- 65 (825)
T ss_pred ccccceeeeeeccccccchh---------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---------
Confidence 33455555556677887653 234666677887766788999999999999998865433221
Q ss_pred ceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEE
Q 013436 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (443)
Q Consensus 216 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~ 295 (443)
..+|..+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|...+.++.|+ |-+.++++|+.|+.++
T Consensus 66 -------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~-P~~~~~a~gStdtd~~ 137 (825)
T KOG0267|consen 66 -------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH-PYGEFFASGSTDTDLK 137 (825)
T ss_pred -------eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec-cceEEeccccccccce
Confidence 23688899999999999999999999999999999999999999999999999998 7888999999999999
Q ss_pred EEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCC
Q 013436 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (443)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (443)
+||.+ ...+...+.+|...|..+.|+|+|+++++++.|..++|||+..
T Consensus 138 iwD~R----k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a---------------------------- 185 (825)
T KOG0267|consen 138 IWDIR----KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA---------------------------- 185 (825)
T ss_pred ehhhh----ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc----------------------------
Confidence 99999 7889999999999999999999999999999999999999988
Q ss_pred cccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhHH
Q 013436 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQS 438 (443)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~~ 438 (443)
+..+..|++|...+..+ .|.|..-++++|+.|++|++||+.+-+.+...++
T Consensus 186 ------gk~~~ef~~~e~~v~sl------e~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 186 ------GKLSKEFKSHEGKVQSL------EFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred ------ccccccccccccccccc------ccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 55677888887544333 3556788899999999999999998776655544
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=6.5e-23 Score=185.03 Aligned_cols=271 Identities=20% Similarity=0.233 Sum_probs=189.3
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC-CeEEEEECCCeEEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV 196 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iw 196 (443)
.....|...|..+.|-|....|++++.|.++++||+.++...... ...+|.+.|.+++|.|+. ..|++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 455789999999999997788999999999999999998666544 567899999999999965 577899999999999
Q ss_pred ECCCCceecccc----ceecccCc-------eeeccCCCCceecEEE---EEEeCCCCEEEEEec-CCeEEEEECCCCee
Q 013436 197 DVGSGTMESLAN----VTEIHDGL-------DFSAADDGGYSFGIFS---LKFSTDGRELVAGSS-DDCIYVYDLEANKL 261 (443)
Q Consensus 197 d~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~i~~---l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~ 261 (443)
|++-........ +...+.+- .-.......+...|.+ +.+..|...|++++. |+.|+|||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 997654211111 11111110 0000111123333444 445557778888887 99999999987653
Q ss_pred eEE--------eecc---CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeE--EEEECCCC
Q 013436 262 SLR--------ILAH---TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT--FIDSRGDG 328 (443)
Q Consensus 262 ~~~--------~~~~---~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~ 328 (443)
... +..| .-.+.++.. +..|.+|++.+.|+.|++|+++.. ...++..+.++...-. .-..+|++
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~l-DssGt~L~AsCtD~sIy~ynm~s~--s~sP~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLIL-DSSGTYLFASCTDNSIYFYNMRSL--SISPVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEe-cCCCCeEEEEecCCcEEEEecccc--CcCchhhccCcccceeeeeeecCCCC
Confidence 322 2223 235677777 477788888888999999999854 3345555555533221 22368999
Q ss_pred CEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccC
Q 013436 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (443)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (443)
.+|++|+.|...++|.+.+.+ .....+.||...++.+ .|.|. +
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e---------------------------------~~~~~l~Ght~eVt~V--~w~pS--~ 372 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPE---------------------------------APPALLLGHTREVTTV--RWLPS--A 372 (720)
T ss_pred ceEeccCCCcceeeeeecCcc---------------------------------CChhhhhCcceEEEEE--eeccc--c
Confidence 999999999999999999854 3355677888544444 45553 2
Q ss_pred CccEEEEeeCCCeEEEEEccCh
Q 013436 409 GQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 409 d~~~l~tg~~dg~v~iwd~~~g 430 (443)
... ++|++.|..++||++..+
T Consensus 373 ~t~-v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 373 TTP-VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCC-ceeeccCcceEEEeccCc
Confidence 333 777799999999999654
No 132
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.2e-24 Score=204.46 Aligned_cols=253 Identities=18% Similarity=0.273 Sum_probs=198.8
Q ss_pred CCCceEEEEECCCCCE----EEEEECCCeEEEEECCC---CeEEEEeeecCCccceEEEEEECCCCC-eEEEEECCCeEE
Q 013436 123 TTSRAYVSQFSADGSL----FVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVH 194 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~----l~~g~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~ 194 (443)
-...-+.++|.+.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.+. .||+|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3566789999998866 88899999999999875 334444455678999999999999765 999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEecCCeEEEEECCCCeeeEEeeccCC--C
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTS--D 271 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~ 271 (443)
|||++..+.-...... .....|.+++|+.. ...|++++.+|.+.|||++..+.+..+..+.. .
T Consensus 143 iWDlnn~~tP~~~~~~--------------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQ--------------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMH 208 (1049)
T ss_pred EeccCCcCCCCCCCCC--------------CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccc
Confidence 9999875432222100 12337999999874 45788899999999999999988888765554 4
Q ss_pred eEEEEEeCCCCCEEEEeeCCC---eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC-CEEEEEeCCCCEEEEeCCC
Q 013436 272 VNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~ 347 (443)
+..+.|+|.....+++++.|. .|.+||+| ....+++.+.+|..+|.++.|++.+ ++|++++.|+.|.+|+.++
T Consensus 209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR---~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLR---FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred eeeeeeCCCCceeeeeecCCCCCceeEeeccc---ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 778999988888888887664 79999999 3567888889999999999999965 8899999999999999999
Q ss_pred CCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEc
Q 013436 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (443)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~ 427 (443)
++.+..+.... ..+..+.|+|. +-..+++++-||.|-||.+
T Consensus 286 ----------------------------------gEvl~~~p~~~--nW~fdv~w~pr---~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 286 ----------------------------------GEVLGELPAQG--NWCFDVQWCPR---NPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred ----------------------------------ceEeeecCCCC--cceeeeeecCC---Ccchhhhheeccceeeeee
Confidence 34455554422 33445556665 4558899999999999999
Q ss_pred cChh
Q 013436 428 VSIQ 431 (443)
Q Consensus 428 ~~g~ 431 (443)
.++.
T Consensus 327 ~~~~ 330 (1049)
T KOG0307|consen 327 QGTD 330 (1049)
T ss_pred ecCC
Confidence 7654
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=3.9e-23 Score=175.34 Aligned_cols=226 Identities=20% Similarity=0.213 Sum_probs=168.0
Q ss_pred CCccceEEEEEECCCC--CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEE
Q 013436 166 KSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGREL 242 (443)
Q Consensus 166 ~~~~~~v~~i~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l 242 (443)
..|.+.+..+.-++-+ .+.++-+..|.|+||++...-......-...+....-+.....+|...-+.|.||| ....|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3556667777766654 45666778899999998643211100000011111112223457888889999999 22348
Q ss_pred EEEecCCeEEEEECCCCeee---EEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCe
Q 013436 243 VAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (443)
Q Consensus 243 ~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v 319 (443)
++|..-+.|++|...++.-. ..+.+|+..|-.++|+|.....|++|+-||+|+|||+|... ...++ ....|.+.|
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~-~~~~~-~~kAh~sDV 305 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP-KKAAV-STKAHNSDV 305 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC-cccee-EeeccCCce
Confidence 89988889999998887532 34558999999999998889999999999999999999542 11333 347899999
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeE
Q 013436 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 399 (443)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (443)
+.|+|+....+||+|+.||+++|||+|..+. ++++..|+-|...++.+
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~-------------------------------~~pVA~fk~Hk~pItsi- 353 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKS-------------------------------GQPVATFKYHKAPITSI- 353 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccC-------------------------------CCcceeEEeccCCeeEE-
Confidence 9999999888999999999999999998543 56789999999766655
Q ss_pred EEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 400 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 400 ~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
.|+|. +...|+++|.|..|.|||+..
T Consensus 354 -eW~p~---e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 354 -EWHPH---EDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred -Eeccc---cCceEEeccCCCcEEEEEeec
Confidence 47775 677899999999999999964
No 134
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.3e-22 Score=185.38 Aligned_cols=248 Identities=20% Similarity=0.258 Sum_probs=197.5
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC---CCCeEEEEECCCeEEEEECC
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYASMSPIVHIVDVG 199 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~~l~~~~~dg~i~iwd~~ 199 (443)
-.-.+.+++.||+|++||+|...|+++||++..-+. ......|...|.|+.|+. ..++||+++.|..|++||+.
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 355799999999999999999999999999987533 335678999999999985 35789999999999999987
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCC--CEEEEEecCCeEEEEECCCCeeeEEeec-----cCCCe
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--RELVAGSSDDCIYVYDLEANKLSLRILA-----HTSDV 272 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v 272 (443)
..-.. .. ...+|...|+++.|..+| ..+++++.|+.|++--.+.......+.. ....+
T Consensus 535 rny~l-~q--------------tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 535 RNYDL-VQ--------------TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred cccch-hh--------------hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 54221 11 123688899999999877 6788999998776543332211222222 23568
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC---CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
+.|++- +..+++++++.|..|+|||+. +++..+.|++ |.+....+...|.|.||++.+.|.++.++|+.+
T Consensus 600 YDm~Vd-p~~k~v~t~cQDrnirif~i~----sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s-- 672 (1080)
T KOG1408|consen 600 YDMAVD-PTSKLVVTVCQDRNIRIFDIE----SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS-- 672 (1080)
T ss_pred EEeeeC-CCcceEEEEecccceEEEecc----ccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc--
Confidence 899994 888999999999999999998 8888888874 667788899999999999999999999999999
Q ss_pred CccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
++++....||...++- ..|++|-+.|++.+.||+|.||.+..
T Consensus 673 --------------------------------gEcvA~m~GHsE~VTG------~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 673 --------------------------------GECVAQMTGHSEAVTG------VKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred --------------------------------chhhhhhcCcchheee------eeecccchhheeecCCceEEEEECch
Confidence 6778888899855443 23666899999999999999999976
Q ss_pred hhhh
Q 013436 430 IQIL 433 (443)
Q Consensus 430 g~~~ 433 (443)
-.++
T Consensus 715 ~mii 718 (1080)
T KOG1408|consen 715 TMII 718 (1080)
T ss_pred hHhH
Confidence 4443
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.2e-21 Score=162.27 Aligned_cols=208 Identities=15% Similarity=0.116 Sum_probs=160.1
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
....-.|..++.+++|.+ ...+++|+.||.|+.+|+.++... ....|..+|.+|.+++....+++|+.|++|++|
T Consensus 47 l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~w 121 (323)
T KOG1036|consen 47 LKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFW 121 (323)
T ss_pred hhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce----eeccCCCceEEEEeeccCCeEEEcccCccEEEE
Confidence 344457899999999997 456999999999999999998433 356788899999999988899999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee--ccCCCeEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNT 274 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~ 274 (443)
|.+........... ..|.++..+ +..|++|+.+..|.+||+++........ ..+-.++|
T Consensus 122 D~R~~~~~~~~d~~-----------------kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~ 182 (323)
T KOG1036|consen 122 DPRNKVVVGTFDQG-----------------KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRC 182 (323)
T ss_pred eccccccccccccC-----------------ceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEE
Confidence 99864332222111 168887775 7789999999999999999876444222 34557899
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC---------CCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---------EGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
+++.| ++.=+++++.||.|.+=.+............|..|. -+|++|+|+|-...|+||+.||.|.+||+
T Consensus 183 v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 183 VALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred EEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 99984 677778899999988866653211223334455553 37899999999899999999999999999
Q ss_pred CCCC
Q 013436 346 RKMS 349 (443)
Q Consensus 346 ~~~~ 349 (443)
.+.+
T Consensus 262 ~~rK 265 (323)
T KOG1036|consen 262 FNRK 265 (323)
T ss_pred cchh
Confidence 9844
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.1e-22 Score=174.14 Aligned_cols=205 Identities=12% Similarity=0.163 Sum_probs=169.7
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC-eEEEEECCCeEEEEECCCC
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~ 201 (443)
-.+.|+++.|+|....|++++.|++++||.++.. .-.......-...+|.+.+|.|+|. .+++++.....+.||+.+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk-~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCc-cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 4678999999999999999999999999998753 2223333444556899999999998 8889999999999999998
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCC
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 281 (443)
+...+....... ...+..+..+|++++|+..+..|.|.+....+++.+..++ -.+.|..++|+ .+
T Consensus 291 k~~k~~~~~g~e-------------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fs-Sd 355 (514)
T KOG2055|consen 291 KVTKLKPPYGVE-------------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFS-SD 355 (514)
T ss_pred ccccccCCCCcc-------------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEe-cC
Confidence 876655443322 1257778899999999999999999999999999888874 46789999998 88
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCC-CeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
++.|++++.+|.|.+||++ ...+++.+....+ .-++++.++++.+||+|+..|.|.|||.++
T Consensus 356 sk~l~~~~~~GeV~v~nl~----~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLR----QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred CcEEEEEcCCceEEEEecC----CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 8889899999999999999 6788887764322 336778889999999999999999999876
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.5e-21 Score=175.22 Aligned_cols=247 Identities=14% Similarity=0.254 Sum_probs=192.5
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
+--.++|.++||+.+.+.||.+-.+|.|.||++..++.....+.. +....|.+++|++ +..|.+.+.+|.|.-||+.+
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence 334678999999999999999999999999999998777665554 5667799999994 55688889999999999998
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE--EeeccCCCeEEEEEe
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFG 278 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~ 278 (443)
.+........ .+.|++++.+|.+..+++|++||.++.++...++... .+...++.|.+++|+
T Consensus 100 lk~~~~~d~~----------------gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 100 LKQKYNIDSN----------------GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred CceeEEecCC----------------CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence 8765443322 2389999999999999999999988888888776543 344567899999997
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCCCCCceeeee----cC----CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL----MG----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~----~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
+++..++.|+.||.|++||.. .+..+... .+ ...-|.++.|-.++ .|++|..-|+|++||...++
T Consensus 164 -~~~~~i~~Gs~Dg~Iriwd~~----~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT- 236 (691)
T KOG2048|consen 164 -PTGTKIAGGSIDGVIRIWDVK----SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT- 236 (691)
T ss_pred -CCccEEEecccCceEEEEEcC----CCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc-
Confidence 889899999999999999998 55544411 11 22346777776554 69999999999999999844
Q ss_pred ccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
.++.+..|...+.++ +..+++.+++++|.|+.|..|...++
T Consensus 237 ---------------------------------LiqS~~~h~adVl~L------av~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 237 ---------------------------------LIQSHSCHDADVLAL------AVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred ---------------------------------hhhhhhhhhcceeEE------EEcCCCCeEEEccCCCceEEEEecCC
Confidence 344555555333332 23347899999999999999988766
Q ss_pred h
Q 013436 431 Q 431 (443)
Q Consensus 431 ~ 431 (443)
+
T Consensus 278 ~ 278 (691)
T KOG2048|consen 278 K 278 (691)
T ss_pred c
Confidence 4
No 138
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.5e-21 Score=161.17 Aligned_cols=205 Identities=18% Similarity=0.151 Sum_probs=160.2
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC--eEEEEECCCeEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSPIVH 194 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~~~~~dg~i~ 194 (443)
+.....|.++|.+++|+.||..+++|+.|+.+++||+.+++.. ....|.++|..+.|-+... .|++|+.|.+|+
T Consensus 65 ~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 65 PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK 140 (347)
T ss_pred chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEeccccccee
Confidence 3556789999999999999999999999999999999998433 3557888999999977654 899999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE-Eee-ccCCCe
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RIL-AHTSDV 272 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~-~~~~~v 272 (443)
.||.+.........+.+ .++++.. ...+++++..+..|.+|+++.+.... .+. ...-.+
T Consensus 141 fWD~R~~~pv~t~~LPe-----------------RvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~ 201 (347)
T KOG0647|consen 141 FWDTRSSNPVATLQLPE-----------------RVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQT 201 (347)
T ss_pred ecccCCCCeeeeeeccc-----------------eeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCccccee
Confidence 99999877766655544 5666554 35578888889999999997764222 111 234467
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC---------CCeEEEEECCCCCEEEEEeCCCCEEEE
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---------EGITFIDSRGDGRYLISNGKDQAIKLW 343 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~~~dg~i~iw 343 (443)
+|++.. .+....+.|+..|.+.+..+..... +.-..|..|. -.|++|+|+|....|++.+.||++.+|
T Consensus 202 R~va~f-~d~~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FW 278 (347)
T KOG0647|consen 202 RCVACF-QDKDGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFW 278 (347)
T ss_pred eEEEEE-ecCCceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEe
Confidence 889887 6666669999999999999874321 3333444443 257889999999999999999999999
Q ss_pred eCCC
Q 013436 344 DIRK 347 (443)
Q Consensus 344 d~~~ 347 (443)
|-..
T Consensus 279 Dkda 282 (347)
T KOG0647|consen 279 DKDA 282 (347)
T ss_pred cchh
Confidence 9876
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=6.1e-21 Score=167.90 Aligned_cols=294 Identities=17% Similarity=0.259 Sum_probs=200.0
Q ss_pred eecccccCCCccccCCCCceEEEEECCC--CCEEEEE--ECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCe
Q 013436 108 LSRYLPVNGPWPVDQTTSRAYVSQFSAD--GSLFVAG--FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~~g--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 183 (443)
+|........+++-.....|.|++||+- |.+|+.- +.+..+.+||...+....... ..+..|...+|+|.+..
T Consensus 138 iWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk---~sne~v~~a~FHPtd~n 214 (626)
T KOG2106|consen 138 IWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK---TSNEVVFLATFHPTDPN 214 (626)
T ss_pred ecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce---eccceEEEEEeccCCCc
Confidence 3443444445556677889999999983 4555543 334568899988775554433 23346889999998887
Q ss_pred EEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE
Q 013436 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL 263 (443)
Q Consensus 184 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 263 (443)
|+.....+.+..|+.+++.......+.+.++ +.-|.|++|.++|. +++|..+|.|.||+..+.+..+
T Consensus 215 liit~Gk~H~~Fw~~~~~~l~k~~~~fek~e------------kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k 281 (626)
T KOG2106|consen 215 LIITCGKGHLYFWTLRGGSLVKRQGIFEKRE------------KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISK 281 (626)
T ss_pred EEEEeCCceEEEEEccCCceEEEeecccccc------------ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEe
Confidence 7777778999999999887765554443322 13799999999998 8899999999999999888888
Q ss_pred EeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC------------------------------------CCc
Q 013436 264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV------------------------------------KGK 307 (443)
Q Consensus 264 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------------------------------~~~ 307 (443)
....|.+.|.+++.. .+|.++ +|+.|..|..||-.-... ...
T Consensus 282 ~~~aH~ggv~~L~~l-r~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 282 QVHAHDGGVFSLCML-RDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred EeeecCCceEEEEEe-cCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 777999999999997 777665 599999999999321000 000
Q ss_pred eeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCC-Cee--
Q 013436 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQS-- 384 (443)
Q Consensus 308 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 384 (443)
......+|......++.+|+...+++++.|+.+++|+ ..+........ .......|.|.+ .+.... ...
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~-----d~~~~~~fhpsg-~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE-----DPAECADFHPSG-VVAVGTATGRWF 431 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec-----CceeEeeccCcc-eEEEeeccceEE
Confidence 1112345778888999999999999999999999999 33333332221 122334444444 221110 011
Q ss_pred ------EEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 385 ------VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 385 ------~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
-..+..|.....+ ..+.|+|+|.+||.|+.|+.|+||-+..+.
T Consensus 432 V~d~e~~~lv~~~~d~~~l----s~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 432 VLDTETQDLVTIHTDNEQL----SVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred EEecccceeEEEEecCCce----EEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 1111222221111 122477799999999999999999987543
No 140
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=1.1e-20 Score=166.41 Aligned_cols=254 Identities=13% Similarity=0.133 Sum_probs=188.5
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
.-|.|++|.++|+ +++|..+|.|.||+..+.+..+.. ..|.+.|.+++.-.+|.+| +|+.|..|..||-.-.+ .
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~---~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k-~ 320 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQV---HAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRK-L 320 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEe---eecCCceEEEEEecCccEe-ecCccceEEeccccccc-c
Confidence 5699999999998 889999999999999776444432 2788899999999999755 59999999999932221 1
Q ss_pred ccccceecccCceeecc-------------------------CCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 013436 205 SLANVTEIHDGLDFSAA-------------------------DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 259 (443)
....+++.......... ...+|......++.+|+...+++++.|+.+++|+ ..
T Consensus 321 r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~ 398 (626)
T KOG2106|consen 321 RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH 398 (626)
T ss_pred ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CC
Confidence 11111111111000000 0035777899999999999999999999999999 44
Q ss_pred eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCC
Q 013436 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (443)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 339 (443)
++.... .-..++.|+.|+ |.+ .++.|...|...+.|.. +...+..-.. .+++++++|+|+|.+||.|+.|+.
T Consensus 399 k~~wt~-~~~d~~~~~~fh-psg-~va~Gt~~G~w~V~d~e----~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 399 KLEWTK-IIEDPAECADFH-PSG-VVAVGTATGRWFVLDTE----TQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred ceeEEE-EecCceeEeecc-Ccc-eEEEeeccceEEEEecc----cceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe
Confidence 444333 346788999998 667 99999999999999997 5555544444 889999999999999999999999
Q ss_pred EEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCC
Q 013436 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (443)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~d 419 (443)
|+||-+... +.....+..+.. +.+.+.+||+|+++|.+-+.|
T Consensus 471 iyiy~Vs~~---------------------------------g~~y~r~~k~~g-----s~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 471 IYIYRVSAN---------------------------------GRKYSRVGKCSG-----SPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred EEEEEECCC---------------------------------CcEEEEeeeecC-----ceeEEeeecCCCceEEeccCc
Confidence 999988762 233444443332 233455688899999999999
Q ss_pred CeEEEEEccChhh
Q 013436 420 SCVYVYDLVSIQI 432 (443)
Q Consensus 420 g~v~iwd~~~g~~ 432 (443)
-.|.+|.....+.
T Consensus 513 ~eiLyW~~~~~~~ 525 (626)
T KOG2106|consen 513 YEILYWKPSECKQ 525 (626)
T ss_pred eEEEEEccccCcc
Confidence 9999996544333
No 141
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=2.1e-21 Score=159.35 Aligned_cols=286 Identities=17% Similarity=0.186 Sum_probs=200.1
Q ss_pred ccccCCCCceEEEEECCCC-CEEEEEECC-------CeEEEEECCCCeEE------EEee-ecCCccceEEEEEECCCCC
Q 013436 118 WPVDQTTSRAYVSQFSADG-SLFVAGFQA-------SQIRIYDVERGWKI------QKDI-LAKSLRWTVTDTSLSPDQR 182 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~-~~l~~g~~d-------~~i~iwd~~~~~~~------~~~~-~~~~~~~~v~~i~~s~~~~ 182 (443)
..|..|.+.|+.++-+|-. +.|+++..+ ..+.||.+...... .... ....+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 4567889999999999965 556665442 24789988654211 1111 1113345799999999999
Q ss_pred eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC--CCCEEEEEecCCeEEEEECCCCe
Q 013436 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANK 260 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~ 260 (443)
.+++.. |..|.+|++..+..+ ...+... ...++....++-+|+| +++.+++. .|+++..||+++.+
T Consensus 137 klasm~-dn~i~l~~l~ess~~-vaev~ss---------~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~ 204 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKI-VAEVLSS---------ESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMK 204 (370)
T ss_pred eeEEec-cCceEEEEcccCcch-heeeccc---------ccccccceecccccCCCCccceEEEe-CCCcEEEEEccchh
Confidence 998876 788999999877553 1111110 1112444678889999 78878776 48889999999987
Q ss_pred eeEEee-ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC-CCEEEEEeCCC
Q 013436 261 LSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQ 338 (443)
Q Consensus 261 ~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg 338 (443)
....+. +|...|..+.|+|....+|++|++||.|++||.|. +..++..+.+|...|.++.|+|. .+++++++.|.
T Consensus 205 ~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~---tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 205 KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK---TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC---CCccccccCCCceEEEEEEecCccceEEEecCCCc
Confidence 766665 78899999999988888999999999999999993 66889999999999999999995 46778999999
Q ss_pred CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC
Q 013436 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (443)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~ 418 (443)
.|.+|.....+.......+........ ........--.+..+.+|..|...+. .+.|+.+ |.-.+|+-+.
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~-----~dseer~kpL~dg~l~tydehEDSVY--~~aWSsa---dPWiFASLSY 351 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESED-----EDSEERVKPLQDGQLETYDEHEDSVY--ALAWSSA---DPWIFASLSY 351 (370)
T ss_pred eeEEEeccccccccccccccccccCcc-----hhhHHhcccccccccccccccccceE--EEeeccC---CCeeEEEecc
Confidence 999998877554333222111111000 00000111112455778888885444 4556654 6677899999
Q ss_pred CCeEEEEEcc
Q 013436 419 DSCVYVYDLV 428 (443)
Q Consensus 419 dg~v~iwd~~ 428 (443)
||+|.|=.+.
T Consensus 352 DGRviIs~V~ 361 (370)
T KOG1007|consen 352 DGRVIISSVP 361 (370)
T ss_pred CceEEeecCC
Confidence 9999887653
No 142
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.7e-21 Score=177.50 Aligned_cols=277 Identities=12% Similarity=0.183 Sum_probs=202.1
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECC-CCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
.+.||.+.|..++|+|.|.+|++.+.|.+-||+-.- ....-......+-|...++|++|-+....+++|.....+++|+
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence 457999999999999999999999999999998755 2222345555667888899999998777788998999999997
Q ss_pred CCCCceecc----------------------ccc-----e--ecccCce----eec------------------------
Q 013436 198 VGSGTMESL----------------------ANV-----T--EIHDGLD----FSA------------------------ 220 (443)
Q Consensus 198 ~~~~~~~~~----------------------~~~-----~--~~~~~~~----~~~------------------------ 220 (443)
....-.... ..+ . ....+.. ...
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 653110000 000 0 0000000 000
Q ss_pred ---cCCCCceecEEEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCC
Q 013436 221 ---ADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN 292 (443)
Q Consensus 221 ---~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~ 292 (443)
...-||...|++++.+|+++++|+++.. ..|++|+..+...+..+..|.-.|+.|+|+ +++++|++.+.|.
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS-pdg~~LLsvsRDR 594 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS-PDGRYLLSVSRDR 594 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC-CCCcEEEEeecCc
Confidence 0004799999999999999999998764 359999999988888999999999999998 9999999999999
Q ss_pred eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCC
Q 013436 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (443)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (443)
++.+|.................|..-|.+.+|+|++.+|+|+|.|.+|++|.......
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d---------------------- 652 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD---------------------- 652 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh----------------------
Confidence 9999998633222222334678999999999999999999999999999999887420
Q ss_pred CCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCcc-EEEEeeCCCeEEEEEcc
Q 013436 373 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~tg~~dg~v~iwd~~ 428 (443)
+.+..+..-.....+....+.+.+.++.. .++.|-+.|.|.+|...
T Consensus 653 ----------~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 653 ----------KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ----------hhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 11111111111223334456665555444 77888899999999864
No 143
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=7.1e-21 Score=173.54 Aligned_cols=277 Identities=18% Similarity=0.296 Sum_probs=209.2
Q ss_pred cccccceeecccccCCCccc-------cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEE
Q 013436 101 AADCCHMLSRYLPVNGPWPV-------DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT 173 (443)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 173 (443)
+++...++|..-.....|.- .+....-+...|+|+++.+++-+..|..++|.......-.......+|...|+
T Consensus 286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~ 365 (764)
T KOG1063|consen 286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVK 365 (764)
T ss_pred ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccce
Confidence 35566666665555444432 34455688999999999999999999999999444333334445778999999
Q ss_pred EEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEE
Q 013436 174 DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (443)
Q Consensus 174 ~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i 253 (443)
+++|+|.|.+|++++.|.+-++|-.-..+.. -..+ ..+.-|...+.|++|-+....|++|.+.+.+++
T Consensus 366 dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-wHEi-----------aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 366 DVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-WHEI-----------ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRV 433 (764)
T ss_pred eeeecCCCCEEEEeccccceeeecccccccc-eeee-----------cccccccccceeeehccCCceeeecccceeeee
Confidence 9999999999999999999999876522211 1111 111236668999999986667888888888999
Q ss_pred EECCC-------------------------------------------Ce------------------------------
Q 013436 254 YDLEA-------------------------------------------NK------------------------------ 260 (443)
Q Consensus 254 wd~~~-------------------------------------------~~------------------------------ 260 (443)
|+... +.
T Consensus 434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t 513 (764)
T KOG1063|consen 434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT 513 (764)
T ss_pred ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence 87630 00
Q ss_pred ---eeEEeeccCCCeEEEEEeCCCCCEEEEeeCCC-----eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEE
Q 013436 261 ---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 332 (443)
Q Consensus 261 ---~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 332 (443)
.+.++.+|...|++++.+ ++++++|+++... .|++|+.. +...+..+.+|.-.|+.++|+||+++|+
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s-~~gnliASaCKS~~~ehAvI~lw~t~----~W~~~~~L~~HsLTVT~l~FSpdg~~LL 588 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAIS-PTGNLIASACKSSLKEHAVIRLWNTA----NWLQVQELEGHSLTVTRLAFSPDGRYLL 588 (764)
T ss_pred cchhhHHhccCceeEEEEEec-CCCCEEeehhhhCCccceEEEEEecc----chhhhheecccceEEEEEEECCCCcEEE
Confidence 011234688889999997 8999999998653 69999998 7777788999999999999999999999
Q ss_pred EEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccE
Q 013436 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (443)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 412 (443)
+.+.|.++.+|........ .......+.|. +++|...|+|++.+
T Consensus 589 svsRDRt~sl~~~~~~~~~------------------------------e~~fa~~k~Ht------RIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 589 SVSRDRTVSLYEVQEDIKD------------------------------EFRFACLKAHT------RIIWDCSWSPDEKY 632 (764)
T ss_pred EeecCceEEeeeeecccch------------------------------hhhhccccccc------eEEEEcccCcccce
Confidence 9999999999988542110 01122244555 77899999999999
Q ss_pred EEEeeCCCeEEEEEccCh
Q 013436 413 IYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 413 l~tg~~dg~v~iwd~~~g 430 (443)
++|+|.|.+|.+|.....
T Consensus 633 FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEecCCceEEEEeccCc
Confidence 999999999999999877
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.7e-21 Score=175.99 Aligned_cols=252 Identities=20% Similarity=0.248 Sum_probs=180.1
Q ss_pred EEEEECCC---CCEEEEEECCCeEEEEECCCCeEE---EEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 013436 128 YVSQFSAD---GSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 128 ~~~~~s~~---~~~l~~g~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 201 (443)
.+..|++- ...||.+..||.|.++|...-... ..+.....|...|.+++|-|-...|++++.|.++++||+++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 34566653 367999999999999998753211 112345678889999999997778999999999999999998
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCe--------------------
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK-------------------- 260 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~-------------------- 260 (443)
++..... ..||.+.|.+++|.| +...|++|+.||.|.|||++-..
T Consensus 133 ~l~G~~~--------------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 133 RLVGGRL--------------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred eeeccee--------------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 8765431 126888999999999 45689999999999999986432
Q ss_pred e-------eEEeeccCCC----eEEEEEeCCCCCEEEEeeC-CCeEEEEecccCCCC--Ccee--eeecCC---CCCeEE
Q 013436 261 L-------SLRILAHTSD----VNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVK--GKPA--GVLMGH---LEGITF 321 (443)
Q Consensus 261 ~-------~~~~~~~~~~----v~~i~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~--~~~~--~~~~~~---~~~v~~ 321 (443)
+ +.....+... |+.+.| .|...||+++. |+.|+|||+|..... .++. ..+.-| .-++++
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 0 0111123333 444555 67778888877 999999999943211 1111 122223 346788
Q ss_pred EEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEE
Q 013436 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (443)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (443)
+.....|.+|.+.+.|+.|++|++..... ..+..+.++......+..
T Consensus 277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~--------------------------------sP~~~~sg~~~~sf~vks- 323 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDNSIYFYNMRSLSI--------------------------------SPVAEFSGKLNSSFYVKS- 323 (720)
T ss_pred EEecCCCCeEEEEecCCcEEEEeccccCc--------------------------------CchhhccCcccceeeeee-
Confidence 88888889999888999999999998442 334455555433322222
Q ss_pred ecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 402 ~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
..|||+.+|++|+.|...++|.+.+-+
T Consensus 324 ---~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 324 ---ELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred ---ecCCCCceEeccCCCcceeeeeecCcc
Confidence 356799999999999999999998654
No 145
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.3e-22 Score=171.35 Aligned_cols=206 Identities=12% Similarity=0.148 Sum_probs=159.3
Q ss_pred cCCccceEEEEEECCCC-CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEE
Q 013436 165 AKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (443)
Q Consensus 165 ~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 243 (443)
+.+|...|.+++=+|.. ..+++|+.||.|+|||+.+..+...+. .|.+.|..|++.. ..++
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~----------------AH~G~V~Gi~v~~--~~~~ 123 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK----------------AHEGLVRGICVTQ--TSFF 123 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee----------------cccCceeeEEecc--cceE
Confidence 46888899999999987 789999999999999999877654443 2444566666654 3355
Q ss_pred EEecCCeEE--------------------------------------EEECCCCeeeEEeeccCCCeEEEEEeCCCCCEE
Q 013436 244 AGSSDDCIY--------------------------------------VYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (443)
Q Consensus 244 ~~~~dg~i~--------------------------------------iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 285 (443)
+++.|.+|+ |||.+...++..+.-....|.++.|+|....+|
T Consensus 124 tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL 203 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL 203 (433)
T ss_pred EecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence 555555444 555555556666666667789999998888899
Q ss_pred EEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCccc
Q 013436 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (443)
Q Consensus 286 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (443)
++|+.|+.|.+||+| ...++.... ....-+.|+|+|++-.+++++.|..++.||++..
T Consensus 204 as~~sDrsIvLyD~R----~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l----------------- 261 (433)
T KOG0268|consen 204 ASCASDRSIVLYDLR----QASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL----------------- 261 (433)
T ss_pred eeeccCCceEEEecc----cCCccceee-eeccccceecCccccceeeccccccceehhhhhh-----------------
Confidence 999999999999999 666665543 2345578999998888999999999999999985
Q ss_pred ccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhh
Q 013436 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~ 432 (443)
..++..+.+|. ..+.+.+|||.|+-+++||.|.+|+||.+..|.-
T Consensus 262 ----------------~~p~~v~~dhv------sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 262 ----------------SRPLNVHKDHV------SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred ----------------cccchhhcccc------eeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence 35577888887 3345567888999999999999999999987653
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.3e-22 Score=194.97 Aligned_cols=256 Identities=18% Similarity=0.267 Sum_probs=187.1
Q ss_pred EEEEECCCCC-EEEEEE----------CCCeEEEEECCCCeEE--EEeeecCCccceEEEEEECCCCCe----EEEEECC
Q 013436 128 YVSQFSADGS-LFVAGF----------QASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRH----LVYASMS 190 (443)
Q Consensus 128 ~~~~~s~~~~-~l~~g~----------~d~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~i~~s~~~~~----l~~~~~d 190 (443)
-.++|+|++. ++|+|. .+.++.||.++..... .+...........+.++|.+.+.. ||.|..|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 3568999886 566542 2455666655432111 111122233446889999998765 8888999
Q ss_pred CeEEEEECCCC---ceeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEee
Q 013436 191 PIVHIVDVGSG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL 266 (443)
Q Consensus 191 g~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~ 266 (443)
|.|.+||...- ........ ...|.+.|..+.|++.. +.|++|+.+|.|.|||+...+......
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~-------------~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~ 156 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLAT-------------KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG 156 (1049)
T ss_pred CceEEecchhhccCcchHHHhh-------------hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC
Confidence 99999998652 22222111 12477799999999955 599999999999999998765444331
Q ss_pred --ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCC--CeEEEEECCCC-CEEEEEeCC---C
Q 013436 267 --AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDG-RYLISNGKD---Q 338 (443)
Q Consensus 267 --~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~s~~~d---g 338 (443)
...+.|.+++|+....++|++++.+|.+.|||+| ..+++..+..+.. .+..++|+|+. ..|++++.| -
T Consensus 157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr----~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR----KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCcccceEeccchhhhHHhhccCCCCCceecccc----CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 3467899999997788899999999999999999 6666766665544 47789999975 345555554 3
Q ss_pred CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC
Q 013436 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (443)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~ 418 (443)
.|.+||+|... ..++++.+|. ..++.+.|++. |..+|++++.
T Consensus 233 viqlWDlR~as---------------------------------sP~k~~~~H~--~GilslsWc~~---D~~lllSsgk 274 (1049)
T KOG0307|consen 233 VIQLWDLRFAS---------------------------------SPLKILEGHQ--RGILSLSWCPQ---DPRLLLSSGK 274 (1049)
T ss_pred eeEeecccccC---------------------------------Cchhhhcccc--cceeeeccCCC---CchhhhcccC
Confidence 69999999843 4467788888 56667778876 7799999999
Q ss_pred CCeEEEEEccChhhhhHhHH
Q 013436 419 DSCVYVYDLVSIQILFCRQS 438 (443)
Q Consensus 419 dg~v~iwd~~~g~~~~~~~~ 438 (443)
|+.|.+|+.++|+.+..+-.
T Consensus 275 D~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred CCCeeEecCCCceEeeecCC
Confidence 99999999999999887654
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.8e-21 Score=159.73 Aligned_cols=215 Identities=21% Similarity=0.261 Sum_probs=159.2
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeE
Q 013436 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (443)
Q Consensus 172 v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i 251 (443)
..++.|++.|.+||+|+.||.|.|||+.+........ +|..+|.+++||+||+.|++++.|..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls----------------aH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS----------------AHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh----------------ccccceeEEEecCCCCEeeeecCCcee
Confidence 6789999999999999999999999999876543332 577799999999999999999999999
Q ss_pred EEEECCCCeeeEEeeccCCCeEEEEEe----------------------------------------------CCCCCEE
Q 013436 252 YVYDLEANKLSLRILAHTSDVNTVCFG----------------------------------------------DESGHLI 285 (443)
Q Consensus 252 ~iwd~~~~~~~~~~~~~~~~v~~i~~~----------------------------------------------~~~~~~l 285 (443)
.+||+..+.+++++. ..++|....|+ +..|+++
T Consensus 90 ~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred EEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEE
Confidence 999999998776653 12222222222 2357899
Q ss_pred EEeeCCCeEEEEecccCCCCCceeeeecCCC-CCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcc
Q 013436 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 364 (443)
Q Consensus 286 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (443)
++|...|.+.++|.. +.+++..+.-.. ..|.++-++..|++|+..+.|..|+.|+++..--...
T Consensus 169 itGtsKGkllv~~a~----t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r----------- 233 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAE----TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGR----------- 233 (405)
T ss_pred EEecCcceEEEEecc----hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCc-----------
Confidence 999999999999998 778887776555 7889999999999999999999999999885211100
Q ss_pred cccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEec-CCccCCccEEEEeeC-CCeEEEEEccChhhhhHhH
Q 013436 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS-PVYSTGQKYIYTGSH-DSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~d~~~l~tg~~-dg~v~iwd~~~g~~~~~~~ 437 (443)
+..+. ..|....-+.+..|. .+||.+|.|++.|+. -..++||.-..|.+++.++
T Consensus 234 -----------------~~e~e--~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 234 -----------------DGEVE--PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred -----------------cCCcC--hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec
Confidence 00000 001111111111121 236669999988875 4679999999999887664
No 148
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=175.81 Aligned_cols=202 Identities=19% Similarity=0.242 Sum_probs=177.3
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
....+++++.++.|++.+.|...|+|-+|+++.|...........|..+|+.++...-++.+++++.+|.+.+||.....
T Consensus 447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 45789999999999999999999999999999996665554457899999999998889999999999999999999887
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 282 (443)
......+.. ++.++..+.....++.+..|-.|+++|+.+.+.++.+.+|.+.|++++|+ ++|
T Consensus 527 l~~~l~l~~-----------------~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS-~Dg 588 (910)
T KOG1539|consen 527 LKKSLRLGS-----------------SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS-PDG 588 (910)
T ss_pred eeeeeccCC-----------------CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC-CCC
Confidence 554444322 67788888888889999999999999999999999999999999999998 999
Q ss_pred CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-CCEEEEeCCC
Q 013436 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-QAIKLWDIRK 347 (443)
Q Consensus 283 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~iwd~~~ 347 (443)
++|++++.|++|++||+. ++.++..+. -..+.+++.|+|+|.+||+...| .-|++|--.+
T Consensus 589 rWlisasmD~tIr~wDlp----t~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 589 RWLISASMDSTIRTWDLP----TGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cEEEEeecCCcEEEEecc----CcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 999999999999999998 777776664 45788999999999999999988 6799996544
No 149
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.4e-20 Score=155.81 Aligned_cols=201 Identities=15% Similarity=0.243 Sum_probs=154.5
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC--CCCeEEEEECCCeEEEEECCCCceeccccceeccc
Q 013436 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (443)
Q Consensus 137 ~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (443)
..+|++...|.|++||..+++.+.. ..++...+..+.|.. ....+.+++.||+|++||++..............
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~---fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE---FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe---ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 6799999999999999999866664 445555677888876 3457889999999999999987654444332211
Q ss_pred CceeeccCCCCceecEEEEEEeCCCCEEEEEec----CCeEEEEECCCCee-eEEe-eccCCCeEEEEEeCCCCCEEEEe
Q 013436 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKL-SLRI-LAHTSDVNTVCFGDESGHLIYSG 288 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~i~~~~~~~~~l~~~ 288 (443)
..+..+++.+.+++.+++|+. +-.|.+||++..+. +..+ ..|...|++++|+|.+.++|++|
T Consensus 117 ------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 117 ------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred ------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 125677777767888888854 56799999998765 4443 48999999999999999999999
Q ss_pred eCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC-CEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 289 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
+.||.|.+||+.... ....+.....|...|..+.|..++ +.|.+-+..++..+|+++........
T Consensus 185 SvDGLvnlfD~~~d~-EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDN-EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred cccceEEeeecCCCc-chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 999999999998543 223344444578889999999876 44777778899999999988754444
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=4.4e-21 Score=168.42 Aligned_cols=201 Identities=16% Similarity=0.222 Sum_probs=165.6
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceec
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (443)
.-.|++......++++|+..+.|+|||+... .+. ..+.+|+..|+++.++....+||+++..|.|.|..+.++....
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~h--r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK-LIH--RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHH-HHh--hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence 4566666666689999999999999999854 222 2577899999999999999999999999999999999886654
Q ss_pred cccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecCCeEEEEECCCCeeeEEe-eccCCCeEEEEEeCCCCC
Q 013436 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGH 283 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~ 283 (443)
.+..... ..|.-+.|+|..+ +|.+++.+|.|.+||+....++..+ ..|..+...|||+|.+..
T Consensus 158 ~f~~~sg---------------qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~ 222 (673)
T KOG4378|consen 158 TFTIDSG---------------QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEA 222 (673)
T ss_pred ceecCCC---------------CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccc
Confidence 4443221 2577899999665 5667899999999999887766554 489999999999999999
Q ss_pred EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
+|++.+.|..|.+||.+ .......+. ...+.+.++|.++|.+|+.|...|.|..||+|..+
T Consensus 223 l~vsVG~Dkki~~yD~~----s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 223 LLVSVGYDKKINIYDIR----SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eEEEecccceEEEeecc----cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 99999999999999998 444444443 34688999999999999999999999999999854
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=6.2e-21 Score=159.34 Aligned_cols=253 Identities=19% Similarity=0.239 Sum_probs=188.0
Q ss_pred CCCCceEEEEECCCC----CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC-CeEEEEECCCeEEEE
Q 013436 122 QTTSRAYVSQFSADG----SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV 196 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~----~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iw 196 (443)
.|...-+.++|+-|- .++|+|+.-|.|+|.|+.+++... ...+|.+.|+.+.++|+. +++++++.|..|++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 478889999998753 478999999999999999885554 466888999999999975 688899999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE-------------
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL------------- 263 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------- 263 (443)
++++..++.++.-. .||...|.++.|+++|.+|++++.|.+|++|++...+...
T Consensus 164 nI~~~~Cv~VfGG~-------------egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGV-------------EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred eccCCeEEEEeccc-------------ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 99999887766533 3688899999999999999999999999999998432110
Q ss_pred ---------------EeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC----------CCceeeeecCCCCC
Q 013436 264 ---------------RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV----------KGKPAGVLMGHLEG 318 (443)
Q Consensus 264 ---------------~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~~ 318 (443)
+-..|...|.|+.|- |+++++=+-++.|..|..-.... ....+..+.-....
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~ 307 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCD 307 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccc
Confidence 112356666777775 57899988889999998721110 11223333333445
Q ss_pred eEEEE--ECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeee
Q 013436 319 ITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (443)
Q Consensus 319 v~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (443)
|..+. |.|-+++||.|...|.|.+||+++..+.. ..++..+....+
T Consensus 308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~--------------------------------~ttl~~s~~~~t 355 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK--------------------------------CTTLTHSKSGST 355 (385)
T ss_pred eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc--------------------------------CceEEeccccce
Confidence 55554 56678899999999999999999854321 122222222233
Q ss_pred eeEEEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 397 ~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
+... +||.||.+|+...+|++|.-||..+
T Consensus 356 VRQ~----sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 356 VRQT----SFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred eeee----eecccCcEEEEEeCCCcEEEEEeec
Confidence 3333 3666999999999999999999653
No 152
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.8e-20 Score=173.38 Aligned_cols=214 Identities=15% Similarity=0.231 Sum_probs=169.8
Q ss_pred eeccccc-CCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE
Q 013436 108 LSRYLPV-NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (443)
Q Consensus 108 ~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 186 (443)
.+..... ..|..+..+...|.+++... .+|++|+.+++|.+|....+..-. .+....-++.+++|+.+|+++|.
T Consensus 39 ~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~~iaa 113 (933)
T KOG1274|consen 39 KWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGKMIAA 113 (933)
T ss_pred EeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCcEEEe
Confidence 3443333 66667777888888888764 489999999999999998773221 22234447999999999999999
Q ss_pred EECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee
Q 013436 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (443)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 266 (443)
|+.|-.|++.++.......... +|..+|.++.|+|++.+||+.+.||.|++||++++.+...+.
T Consensus 114 gsdD~~vK~~~~~D~s~~~~lr----------------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 114 GSDDTAVKLLNLDDSSQEKVLR----------------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred ecCceeEEEEeccccchheeec----------------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 9999999999998776554433 688899999999999999999999999999999988776654
Q ss_pred c--------cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec--CCCCCeEEEEECCCCCEEEEEeC
Q 013436 267 A--------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 267 ~--------~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~ 336 (443)
+ ....+..++|+|.++ .++..+.|+.|++|+.. .......+. .+...+..++|+|+|+|||+++.
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~----~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRK----GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred cCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccC----CceeheeecccccccceEEEEEcCCCcEEeeecc
Confidence 2 144677889984445 55566778899999998 555555443 34455999999999999999999
Q ss_pred CCCEEEEeCCC
Q 013436 337 DQAIKLWDIRK 347 (443)
Q Consensus 337 dg~i~iwd~~~ 347 (443)
||.|.|||..+
T Consensus 253 ~g~I~vWnv~t 263 (933)
T KOG1274|consen 253 DGQILVWNVDT 263 (933)
T ss_pred CCcEEEEeccc
Confidence 99999999987
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-19 Score=150.75 Aligned_cols=225 Identities=16% Similarity=0.235 Sum_probs=169.3
Q ss_pred cccCCCCceEEEEECC--CCCEEEEEECCCeEEEEECCC------CeEEEEeeecCCccceEEEEEECCC--CCeEEEEE
Q 013436 119 PVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVER------GWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYAS 188 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~--~~~~l~~g~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~ 188 (443)
..+.|.+.|..+.|.+ -|+.+|+++.|+++.||.-.. +..-.+...+...+..|+++.|.|. |-.||+++
T Consensus 54 ~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~ 133 (361)
T KOG2445|consen 54 SWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS 133 (361)
T ss_pred eEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec
Confidence 3468999999999987 479999999999999997521 1222333455667778999999995 77899999
Q ss_pred CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC---CCCEEEEEecC-----CeEEEEECCCC-
Q 013436 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSD-----DCIYVYDLEAN- 259 (443)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~---~~~~l~~~~~d-----g~i~iwd~~~~- 259 (443)
.||.++||+..........++.... .....+...+..+..|+.|+| ...+|++|+.+ +.++||....+
T Consensus 134 aDG~lRIYEA~dp~nLs~W~Lq~Ei---~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~ 210 (361)
T KOG2445|consen 134 ADGILRIYEAPDPMNLSQWTLQHEI---QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG 210 (361)
T ss_pred cCcEEEEEecCCccccccchhhhhh---hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc
Confidence 9999999997665443333332211 111223345667899999998 34688888876 46888875443
Q ss_pred ---eeeEEeeccCCCeEEEEEeCCCC---CEEEEeeCCCeEEEEecccC----------------CCCCceeeeecCCCC
Q 013436 260 ---KLSLRILAHTSDVNTVCFGDESG---HLIYSGSDDNLCKVWDRRCL----------------NVKGKPAGVLMGHLE 317 (443)
Q Consensus 260 ---~~~~~~~~~~~~v~~i~~~~~~~---~~l~~~~~d~~i~iwd~~~~----------------~~~~~~~~~~~~~~~ 317 (443)
..+.++..|+.+|++|+|.|.-| .+||+++.|| |+||.++.. ...-+.+..+.+|.+
T Consensus 211 rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~ 289 (361)
T KOG2445|consen 211 RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG 289 (361)
T ss_pred ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC
Confidence 34456779999999999997655 4899999999 999998721 012234566788999
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 318 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.|..+.|+-.|..|++.+.||+|++|...-
T Consensus 290 ~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 290 EVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred ceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 999999999999999999999999997653
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=6.8e-21 Score=165.17 Aligned_cols=209 Identities=15% Similarity=0.238 Sum_probs=163.5
Q ss_pred cCCCCceEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCeEEEEEC
Q 013436 121 DQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~iwd~ 198 (443)
.+|+++|..++|+..- ..||+|+.|.+|++||+.++++... ...|...|.+++|+|. ...|++|+.|++|.+.|.
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s---~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS---ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCccee---hhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 4799999999999865 6799999999999999999966553 4578889999999996 678999999999999999
Q ss_pred CCCceec-cccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCC-eeeEEeeccCCCeEEE
Q 013436 199 GSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV 275 (443)
Q Consensus 199 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i 275 (443)
+...... ..+ ..+.|..++|.|.. ..+++++.||.|+-+|++.. +++.++.+|.++|.++
T Consensus 317 R~~~~s~~~wk-----------------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl 379 (463)
T KOG0270|consen 317 RDPSNSGKEWK-----------------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGL 379 (463)
T ss_pred cCccccCceEE-----------------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceE
Confidence 8522111 111 12278899999944 56888889999999999986 8999999999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCC-EEEEEeCCCCEEEEeCCCCCCc
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
+++.....++++++.|+.|++|++..........+.+ .-+...|.++.|+-. .|+.|+..+.++|||+.+....
T Consensus 380 ~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 380 SVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EecCCCCcceeeccccceEEEEeecCCCCcccccccc--cccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9998889999999999999999997332111111111 122356677777654 5678888888999999885443
No 155
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=4.6e-19 Score=160.44 Aligned_cols=233 Identities=15% Similarity=0.147 Sum_probs=162.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE-EEEECCCeEEEEECCCCceeccccceeccc
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (443)
++.+++++.|+.|++||+.+++.+.... .+. .+..++|+|+++.+ ++++.++.|++||..+++........
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~---~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---- 72 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFP---VGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG---- 72 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEE---CCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC----
Confidence 3578899999999999999886555432 222 36779999999876 56678899999999887654322110
Q ss_pred CceeeccCCCCceecEEEEEEeCCCCEEEEE-ecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCC-
Q 013436 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN- 292 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~- 292 (443)
..+..++|+|+++.++++ ..++.|++||+++.+.+..+.. ...+.+++|+ +++.+++++..++
T Consensus 73 -------------~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~-~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 73 -------------PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS-PDGKIVVNTSETTN 137 (300)
T ss_pred -------------CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC-CCCCEEEEEecCCC
Confidence 034568999999977655 5689999999999887776643 3456889997 7888888888765
Q ss_pred eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEE-eCCCCEEEEeCCCCCCccccCCcccccCcccccccCC
Q 013436 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 371 (443)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (443)
.+.+||.+ ..+...... ....+..++|+|++++|+++ ..++.|++||+++.+.
T Consensus 138 ~~~~~d~~----~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~--------------------- 191 (300)
T TIGR03866 138 MAHFIDTK----TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV--------------------- 191 (300)
T ss_pred eEEEEeCC----CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------------------
Confidence 56778987 555544433 22345789999999988654 4689999999998432
Q ss_pred CCCCcccCCCCeeEEEEeccc-----eeeeeeEEEecCCccCCccEEEE-eeCCCeEEEEEccChhhhh
Q 013436 372 PQARDLKHPCDQSVATYKGHS-----VLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~d~~~l~t-g~~dg~v~iwd~~~g~~~~ 434 (443)
+..+..+. ...... ...|+|+++++++ .+.++.|.+||+.+++.+.
T Consensus 192 -------------~~~~~~~~~~~~~~~~~~~----~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 192 -------------IKKITFEIPGVHPEAVQPV----GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred -------------eeeeeecccccccccCCcc----ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 22222111 001111 2236678988654 4567789999999887654
No 156
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=152.79 Aligned_cols=270 Identities=15% Similarity=0.204 Sum_probs=191.1
Q ss_pred cccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecC-CccceEEEEEECCCCCeEEEEECC
Q 013436 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMS 190 (443)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~~~~~d 190 (443)
.|..+...+++|.+.|+++.|-.+++ |.+|..-|.|++|++.+...... .. .+...|+.+.--|+ ..|.+-++|
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~---~r~~g~~~it~lq~~p~-d~l~tqgRd 76 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPL---IRLFGRLFITNLQSIPN-DSLDTQGRD 76 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchh---hhhhccceeeceeecCC-cchhhcCCC
Confidence 35566778899999999999998887 88999999999999998754432 22 45667888888887 568899999
Q ss_pred CeEEEEECCCCceeccccceecccCc---------------eeec----------------------cCCCCceecEEEE
Q 013436 191 PIVHIVDVGSGTMESLANVTEIHDGL---------------DFSA----------------------ADDGGYSFGIFSL 233 (443)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~---------------~~~~----------------------~~~~~~~~~i~~l 233 (443)
+.+.+|++..+..+.+..+...+-++ .+.. ....+..+.+.+.
T Consensus 77 ~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 77 PLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred ceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 99999999875443322211100000 0000 0001123345565
Q ss_pred EEeC-CCC--EEEEEecCCeEEEEECCCCeee----------EEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecc
Q 013436 234 KFST-DGR--ELVAGSSDDCIYVYDLEANKLS----------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 234 ~~~~-~~~--~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~ 300 (443)
.+.. ++. ++++|.++|.|.+||+.++..+ .....|..+|.++.|. +.-..=++|+.+..+..|.+.
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeec
Confidence 5432 333 5678889999999999987333 3334689999999996 444455678888889999987
Q ss_pred cCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCC
Q 013436 301 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (443)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (443)
.............-...+|..+...||++.+|+++.|+.||||..+++
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-------------------------------- 283 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-------------------------------- 283 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC--------------------------------
Confidence 432222223333334567899999999999999999999999999994
Q ss_pred CCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEc
Q 013436 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (443)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~ 427 (443)
+++..++-|.. .+..+ +|+||...+|.++.|++|.+|++
T Consensus 284 --~pLAVLkyHsa--gvn~v----Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 --NPLAVLKYHSA--GVNAV----AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --Cchhhhhhhhc--ceeEE----EeCCCCchhhhccCCceEEeeec
Confidence 45667777873 33333 46668899999999999999986
No 157
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=9.1e-20 Score=149.94 Aligned_cols=255 Identities=18% Similarity=0.257 Sum_probs=184.0
Q ss_pred CCceEEEEECC--C-CCEEEEEEC----CCeEEEEECC--CCeEEEEeeecCCccceEEEEEECCCCC-----eEEEEEC
Q 013436 124 TSRAYVSQFSA--D-GSLFVAGFQ----ASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQR-----HLVYASM 189 (443)
Q Consensus 124 ~~~v~~~~~s~--~-~~~l~~g~~----d~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~i~~s~~~~-----~l~~~~~ 189 (443)
.-+++++.||. + +-+||.|+. .+.|.|..+. +++.+.. ....|..+++.+-|.|+.. +||+++
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~--a~fd~~YP~tK~~wiPd~~g~~pdlLATs~- 120 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED--ANFDHPYPVTKLMWIPDSKGVYPDLLATSS- 120 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc--CCCCCCCCccceEecCCccccCcchhhccc-
Confidence 34578888983 3 356888874 4567666554 3433332 2357899999999999863 455533
Q ss_pred CCeEEEEECCCC--ceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCe---eeE
Q 013436 190 SPIVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK---LSL 263 (443)
Q Consensus 190 dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~---~~~ 263 (443)
..+++|.+... +......+. ......+..+++++.|+. +.+++.+++-|-+..|||++++. ...
T Consensus 121 -D~LRlWri~~ee~~~~~~~~L~---------~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 121 -DFLRLWRIGDEESRVELQSVLN---------NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred -CeEEEEeccCcCCceehhhhhc---------cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence 46999998843 222111111 111224556899999997 77899999999999999999873 355
Q ss_pred EeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC-CCCEEEEEeCC-CCEE
Q 013436 264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD-QAIK 341 (443)
Q Consensus 264 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d-g~i~ 341 (443)
.+.+|...|..++|....-+.||+.+.||.+++||+|.... ...+.+-.....+...++|++ |-++||+-..| ..|.
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH-STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~ 269 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH-STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV 269 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc-ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence 67799999999999865667999999999999999995531 223333233356888999997 45677776654 5699
Q ss_pred EEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCe
Q 013436 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (443)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~ 421 (443)
|-|+|.+ ...+..+++|.. .+..+.|.|. ....|+|+|.|..
T Consensus 270 iLDiR~P---------------------------------~tpva~L~~H~a--~VNgIaWaPh---S~~hictaGDD~q 311 (364)
T KOG0290|consen 270 ILDIRVP---------------------------------CTPVARLRNHQA--SVNGIAWAPH---SSSHICTAGDDCQ 311 (364)
T ss_pred EEEecCC---------------------------------CcceehhhcCcc--cccceEecCC---CCceeeecCCcce
Confidence 9999985 355788899984 4455678886 5788999999999
Q ss_pred EEEEEccCh
Q 013436 422 VYVYDLVSI 430 (443)
Q Consensus 422 v~iwd~~~g 430 (443)
+.|||+.+.
T Consensus 312 aliWDl~q~ 320 (364)
T KOG0290|consen 312 ALIWDLQQM 320 (364)
T ss_pred EEEEecccc
Confidence 999999754
No 158
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.9e-19 Score=162.83 Aligned_cols=204 Identities=15% Similarity=0.183 Sum_probs=166.5
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
-...|-.++|++.+ .|++.+.+|.|.-||+.+++.+... ....++|.+++.+|.+..+++|+.||.+..++...++
T Consensus 68 ~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~---d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~ 143 (691)
T KOG2048|consen 68 EDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNI---DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK 143 (691)
T ss_pred CCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEe---cCCCcceeEEEeCCccceEEeecCCceEEEEecCCce
Confidence 46779999999554 5777778899999999998666543 3444589999999999999999999988888888776
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee-------c-cCCCeEE
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-------A-HTSDVNT 274 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~-~~~~v~~ 274 (443)
......+.. .++.|.+++|+|++..+++|+.||.|++||+.++..+.... . ...-|.+
T Consensus 144 I~~~r~l~r--------------q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 144 ITYKRSLMR--------------QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS 209 (691)
T ss_pred EEEEeeccc--------------ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence 654433322 23489999999999999999999999999999987666222 1 2234566
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
+.|- ....|++|...|+|.+||.. .+..+..+..|...|.+++..+++.++++++.|+.|.-|.......
T Consensus 210 v~~L--rd~tI~sgDS~G~V~FWd~~----~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 210 VLFL--RDSTIASGDSAGTVTFWDSI----FGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEe--ecCcEEEecCCceEEEEccc----CcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 6664 45578999999999999998 8899999999999999999999999999999999999988877544
No 159
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4e-20 Score=153.94 Aligned_cols=215 Identities=19% Similarity=0.220 Sum_probs=156.1
Q ss_pred ecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEE
Q 013436 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (443)
Q Consensus 164 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 243 (443)
.+.+|...|++++|+.||++|++++.|+.|++|+++.........+.. +-..+ .-+.+.|.||-+-++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~---------nve~d---hpT~V~FapDc~s~v 148 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ---------NVEYD---HPTRVVFAPDCKSVV 148 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc---------cccCC---CceEEEECCCcceEE
Confidence 367899999999999999999999999999999998743322111110 00011 356789999887655
Q ss_pred EE-ecCCeEEEEECCCCe---eeEE---------eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceee
Q 013436 244 AG-SSDDCIYVYDLEANK---LSLR---------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 310 (443)
Q Consensus 244 ~~-~~dg~i~iwd~~~~~---~~~~---------~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 310 (443)
+. -....+++|-+...+ .... -+.|.-.+..+-.. .++.+|++++.|..|.+|+++ ++.+.
T Consensus 149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-----Gq~L~ 222 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-----GQLLQ 222 (420)
T ss_pred EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-----Cceee
Confidence 54 455679999764322 1111 12456677777775 788999999999999999994 77777
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEec
Q 013436 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (443)
Q Consensus 311 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (443)
.+......-+..+.+|+|+++++++..-.|++|.+--.+.-. ...-..+..++|
T Consensus 223 ~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~--------------------------fqev~rvf~LkG 276 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGT--------------------------FQEVKRVFSLKG 276 (420)
T ss_pred eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcc--------------------------hhhhhhhheecc
Confidence 777666777888999999999999998899999864311100 000234668889
Q ss_pred cceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 391 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 391 ~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
|...+ ...+||++...++|.+.||+++|||..
T Consensus 277 H~saV------~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 277 HQSAV------LAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred chhhe------eeeeeCCCcceeEEEecCCcEEEeecc
Confidence 98432 334577799999999999999999975
No 160
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=1.9e-19 Score=168.48 Aligned_cols=278 Identities=16% Similarity=0.158 Sum_probs=195.0
Q ss_pred cceeecccccCCCccccCCCCceEEEEECCC-CCEEEEEECCCeEEEEECCCCeEE---EEeeecCCccceEEEEEECCC
Q 013436 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPD 180 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~~g~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~v~~i~~s~~ 180 (443)
..++|.+.....+.....-..+|+|++|+|. ..++|.|+.+|.|.+||+..+... ........|..+|+.+.|-.+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 4556666655666677777899999999995 578888899999999999876441 122344578889999999775
Q ss_pred CC--eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECC
Q 013436 181 QR--HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE 257 (443)
Q Consensus 181 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~ 257 (443)
.. -+++++.||.|..|+++.-............. ...........+++++|.+ +...+++|++.|.|+--+-.
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~----~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK----HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhccccccc----ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 44 49999999999999876543311111111000 0000111233789999998 56789999999998873322
Q ss_pred CC--------eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC-
Q 013436 258 AN--------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG- 328 (443)
Q Consensus 258 ~~--------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 328 (443)
.. +....+..|.++|+++.++|-..+.+.+++ |-+++||.... ...++..+..+...|++++|||..
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~---~~~Pl~~~~~~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV---IASPLLSLDSSPDYVTDVAWSPTRP 454 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccC---CCCcchhhhhccceeeeeEEcCcCc
Confidence 21 123355678999999999977777777777 88999999762 446666777788889999999965
Q ss_pred CEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccC
Q 013436 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (443)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (443)
..|+++..||.|.+||+...... ++...+-+. .. .....|++
T Consensus 455 avF~~~d~~G~l~iWDLl~~~~~--------------------------------Pv~s~~~~~---~~---l~~~~~s~ 496 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDLLQDDEE--------------------------------PVLSQKVCS---PA---LTRVRWSP 496 (555)
T ss_pred eEEEEEcCCCceehhhhhccccC--------------------------------Ccccccccc---cc---cceeecCC
Confidence 46778888999999999874321 122221111 11 11223666
Q ss_pred CccEEEEeeCCCeEEEEEcc
Q 013436 409 GQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 409 d~~~l~tg~~dg~v~iwd~~ 428 (443)
.|+.|++|...|.+++|++.
T Consensus 497 ~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 497 NGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CCcEEEEecCCCcEEEEEcC
Confidence 89999999999999999995
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.3e-19 Score=155.02 Aligned_cols=244 Identities=14% Similarity=0.195 Sum_probs=176.6
Q ss_pred CCCEEEEE---ECCCeEEEEECC-CCeEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCeEEEEECCCCceeccccc
Q 013436 135 DGSLFVAG---FQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANV 209 (443)
Q Consensus 135 ~~~~l~~g---~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 209 (443)
+.++||.. +..|-..+.-+. +|+.-...-...+|+++|..++|+|- ...||+|+.|.+|.||.+..+........
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 34565542 223344444432 33222333456789999999999994 66889999999999999987655433221
Q ss_pred eecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEe
Q 013436 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 288 (443)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 288 (443)
......||...|.-++|+|. .+.|++++.|..|.+||+.+++.+.++. |...|.+++|+ .+|.+|++.
T Consensus 123 ---------pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn-~dGs~l~Tt 191 (472)
T KOG0303|consen 123 ---------PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFN-RDGSLLCTT 191 (472)
T ss_pred ---------ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEec-cCCceeeee
Confidence 11223478889999999994 4678999999999999999999988886 99999999998 999999999
Q ss_pred eCCCeEEEEecccCCCCCceeeeecCCCCC-eEEEEECCCCCEEEEEe---CCCCEEEEeCCCCCCccccCCcccccCcc
Q 013436 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEWD 364 (443)
Q Consensus 289 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (443)
+.|..|+|||.| .++.+..-.+|.+. -..+-|-.+|..+-+|- .+..+-+||..+.+..
T Consensus 192 ckDKkvRv~dpr----~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP------------- 254 (472)
T KOG0303|consen 192 CKDKKVRVIDPR----RGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP------------- 254 (472)
T ss_pred cccceeEEEcCC----CCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc-------------
Confidence 999999999999 88998888888663 34455777888554443 3788999998884421
Q ss_pred cccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEE-eeCCCeEEEEEccChh
Q 013436 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~t-g~~dg~v~iwd~~~g~ 431 (443)
-.+..+.... .+ .-|.|.||.+.++. |-.|+.|+.|.+..-.
T Consensus 255 ------------------~~~~elDtSn---Gv----l~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 255 ------------------IALQELDTSN---GV----LLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ------------------ceeEEeccCC---ce----EEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 1122222222 12 23456678887765 4579999999997655
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=6.2e-20 Score=153.39 Aligned_cols=270 Identities=19% Similarity=0.250 Sum_probs=190.6
Q ss_pred cccCCCCceEEEEECC----C-CCEEEEEECCCeEEEEECCCCe--EEEEeeecCCccceEEEEEECCC----CCeEEEE
Q 013436 119 PVDQTTSRAYVSQFSA----D-GSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPD----QRHLVYA 187 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~----~-~~~l~~g~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~i~~s~~----~~~l~~~ 187 (443)
..+.|+.+|+.++|++ + -..+|+.+. +.+.+|...... .+.+......+......++|+-+ ..++|++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 4577889999999995 2 245666554 679999876543 33333334457777888899764 3588999
Q ss_pred ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEecCCeEEEEECCCCeeeEEee
Q 013436 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRIL 266 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 266 (443)
+.-|.|+|.|+.++++..... +|...|..+.|+|+ .+++++++.|..|++|++++..++..+-
T Consensus 112 G~~GvIrVid~~~~~~~~~~~----------------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYR----------------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred cceeEEEEEecchhhhcccee----------------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 999999999999887754433 57779999999995 4789999999999999999999988765
Q ss_pred ---ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC--------------CCce-------ee---eecCCCCCe
Q 013436 267 ---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------------KGKP-------AG---VLMGHLEGI 319 (443)
Q Consensus 267 ---~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~-------~~---~~~~~~~~v 319 (443)
+|.+.|.++.|+ .++.+|++++.|..+++|++..... +..+ .. +-.-|...|
T Consensus 176 G~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred ccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 799999999997 8899999999999999999872110 0000 00 112355566
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEeCCCCCCc-cccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeee
Q 013436 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN-ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (443)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (443)
.|+.|- |.++++-+-++.|..|..-..... ....+ ...+...+..+.-.......+
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp---------------------~es~~Ti~~~~~~~~c~iWfi 311 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKP---------------------PESATTILGEFDYPMCDIWFI 311 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCC---------------------CccceeeeeEeccCccceEEE
Confidence 666664 578999888999999987432111 00000 000122234444444334444
Q ss_pred EEEecCCccCCccEEEEeeCCCeEEEEEccChhhh
Q 013436 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 399 ~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
+..|.| -++.||.|...|.|++||+...+..
T Consensus 312 rf~~d~----~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 312 RFAFDP----WQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred EEeecH----HHHHHhhccCCCcEEEEECCCCCCc
Confidence 444444 6899999999999999999876653
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=164.92 Aligned_cols=261 Identities=17% Similarity=0.232 Sum_probs=198.7
Q ss_pred ccccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC
Q 013436 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (443)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~ 179 (443)
.+++....+-..-.+...+++.+|.+.|+|++|+.||+++|+|+.|..|.+|+..-.. .....|...|.|+.|+|
T Consensus 29 lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-----~LkYSH~D~IQCMsFNP 103 (1081)
T KOG1538|consen 29 LAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-----ILKYSHNDAIQCMSFNP 103 (1081)
T ss_pred EecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-----eeeeccCCeeeEeecCc
Confidence 3455555555666667788999999999999999999999999999999999865321 23346888999999999
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 013436 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (443)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 259 (443)
-...|++++... .-+|............ ...|.+++|..||++|+.|-.+|+|.+-+- ++
T Consensus 104 ~~h~LasCsLsd-FglWS~~qK~V~K~ks------------------s~R~~~CsWtnDGqylalG~~nGTIsiRNk-~g 163 (1081)
T KOG1538|consen 104 ITHQLASCSLSD-FGLWSPEQKSVSKHKS------------------SSRIICCSWTNDGQYLALGMFNGTISIRNK-NG 163 (1081)
T ss_pred hHHHhhhcchhh-ccccChhhhhHHhhhh------------------heeEEEeeecCCCcEEEEeccCceEEeecC-CC
Confidence 999999987643 5678766544322211 227889999999999999999999999874 33
Q ss_pred eeeEEee---ccCCCeEEEEEeCCCC----CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEE
Q 013436 260 KLSLRIL---AHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 332 (443)
Q Consensus 260 ~~~~~~~---~~~~~v~~i~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 332 (443)
+....+. +.+++|.+++|+|..+ ..+++.....++.+|.+ +++.+..-....-...|+.+-++|.+++
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-----sG~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-----SGKQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-----cceeecccccCCCCchhheeccCCcEEE
Confidence 3333333 4778999999997554 57888888888998888 5666654444455667899999999999
Q ss_pred EEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccE
Q 013436 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (443)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 412 (443)
.|+.|+.+++|--.. -.+.++.... ..+|+....|++++
T Consensus 239 iGGsdk~L~~fTR~G-----------------------------------vrLGTvg~~D------~WIWtV~~~PNsQ~ 277 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRDG-----------------------------------VRLGTVGEQD------SWIWTVQAKPNSQY 277 (1081)
T ss_pred EccCCCceEEEeecC-----------------------------------eEEeeccccc------eeEEEEEEccCCce
Confidence 999999999996443 2233333222 34567777789999
Q ss_pred EEEeeCCCeEEEEEccChh
Q 013436 413 IYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 413 l~tg~~dg~v~iwd~~~g~ 431 (443)
++.|+.||+|..|++...+
T Consensus 278 v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 278 VVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred EEEEEccCeeehhhhHHhH
Confidence 9999999999999987544
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=8.1e-20 Score=160.58 Aligned_cols=242 Identities=14% Similarity=0.144 Sum_probs=177.1
Q ss_pred ceEEEEECCCCCEEEEE--ECCCeEEEEECCCCe-EEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 126 RAYVSQFSADGSLFVAG--FQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g--~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
.+..+.|+.... |+++ +.|..|++|.-.... .+.......+. .-.|++......++++|+..+.|+|||++...
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence 388999998765 4443 457788999754320 12221122222 23455555556899999999999999998544
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeecc-CCCeEEEEEeCCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDES 281 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~ 281 (443)
+.... .+|...|+++.++....+|++++..|.|.|..+.++.....+... ...|.-+.|++..
T Consensus 113 ~hr~l----------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk 176 (673)
T KOG4378|consen 113 IHRFL----------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK 176 (673)
T ss_pred Hhhhc----------------cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc
Confidence 43322 257789999999999999999999999999999998877777544 4456689999777
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCceee-eecCCCCCeEEEEECCC-CCEEEEEeCCCCEEEEeCCCCCCccccCCccc
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (443)
..+|.+++.+|.|.+||+. ...++. -...|..+...|+|+|. ..+|++.+.|..|.+||++....
T Consensus 177 r~lL~~asd~G~VtlwDv~----g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s--------- 243 (673)
T KOG4378|consen 177 RFLLSIASDKGAVTLWDVQ----GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS--------- 243 (673)
T ss_pred ceeeEeeccCCeEEEEecc----CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc---------
Confidence 7888999999999999997 334443 44579999999999995 45778999999999999997332
Q ss_pred ccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
...+..... ....+|+++|.+|+.|...|.|+.||++.-+
T Consensus 244 -------------------------~~~l~y~~P-------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 244 -------------------------TDRLTYSHP-------LSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred -------------------------cceeeecCC-------cceeeecCCceEEEeecCCceEEEEecccCC
Confidence 222211111 1233577799999999999999999998643
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=4.4e-19 Score=148.06 Aligned_cols=210 Identities=20% Similarity=0.304 Sum_probs=160.6
Q ss_pred CCceEEEEEC-------CCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccce---EEEEEECCCCCeEEEEECCCeE
Q 013436 124 TSRAYVSQFS-------ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT---VTDTSLSPDQRHLVYASMSPIV 193 (443)
Q Consensus 124 ~~~v~~~~~s-------~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---v~~i~~s~~~~~l~~~~~dg~i 193 (443)
...|+..+|- |+..++|+.+.+.-|++||.-+|+.... .....|... ..+++|+|||..|++| ....|
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrci 181 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCI 181 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccc-hhhhhhHHhhhhheeEEecCCCCeEeec-ccceE
Confidence 4567777776 6788999999999999999999854332 233344333 4679999999988765 56789
Q ss_pred EEEEC-CCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEeeccCCC
Q 013436 194 HIVDV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (443)
Q Consensus 194 ~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (443)
++||+ +.|........... ...+..+-|.+++|+| +.+.+++|+....+-||.-..+.++..+-+|.+.
T Consensus 182 rvFdt~RpGr~c~vy~t~~~---------~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG 252 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTK---------GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG 252 (406)
T ss_pred EEeeccCCCCCCcchhhhhc---------ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC
Confidence 99999 44443222221111 1123455799999999 6668999999999999988888899999999999
Q ss_pred eEEEEEeCCCCCEEEEeeC-CCeEEEEecccCCCCCceeeeecCCCC---CeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 272 VNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLE---GITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
|+.++|. ++|+.|++|.. |-.|..||+|. ...++..+..|.. .-.-....|++++|++|+.||.|++||+..
T Consensus 253 vThL~~~-edGn~lfsGaRk~dkIl~WDiR~---~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 253 VTHLQWC-EDGNKLFSGARKDDKILCWDIRY---SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred eeeEEec-cCcCeecccccCCCeEEEEeehh---ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 9999998 88888888874 67999999993 5667777777755 223355678999999999999999999988
Q ss_pred C
Q 013436 348 M 348 (443)
Q Consensus 348 ~ 348 (443)
.
T Consensus 329 ~ 329 (406)
T KOG2919|consen 329 L 329 (406)
T ss_pred C
Confidence 3
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=1.3e-18 Score=149.54 Aligned_cols=306 Identities=17% Similarity=0.179 Sum_probs=194.6
Q ss_pred CCceEEEEECCCCC-EEEEEECCCeEEEEECCCC------eEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 124 TSRAYVSQFSADGS-LFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 124 ~~~v~~~~~s~~~~-~l~~g~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
..+|+.+.|.++.. .||+|+.|..|+||.+..+ ..+.-...+..|...|+++.|+|+|..||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999999876 9999999999999987653 2444455677899999999999999999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 276 (443)
....-...............-.......+|...|..++|+|++.++++++.|..+++||+..++....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 87631110000000000000001112235788999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCC-----------------CCceeeeecCCCC----CeEEEEECCCCCEEEEEe
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNV-----------------KGKPAGVLMGHLE----GITFIDSRGDGRYLISNG 335 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------------~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~~ 335 (443)
|. +-++++++-+.|...+.+++..... .+...+.+ |.. -...++|+|+|.+|++.+
T Consensus 173 wD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf--hDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 173 WD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF--HDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred cc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee--ecCchhhhhhhcccCCCCcEEEccc
Confidence 95 8888999988888777766541110 00011111 111 234578999999988654
Q ss_pred C----CC-----CEEEEeCCCCCCccccCCcccccCcccccc-------cC--------CCCCCcccCCCCeeEEEEecc
Q 013436 336 K----DQ-----AIKLWDIRKMSSNASCNLGFRSYEWDYRWM-------DY--------PPQARDLKHPCDQSVATYKGH 391 (443)
Q Consensus 336 ~----dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~ 391 (443)
. .+ +.++++-...+......+........++.. .+ -|-...+...+...+..|...
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq 329 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQ 329 (434)
T ss_pred ceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccc
Confidence 2 22 234554443222221111111111111110 00 011111223334445555444
Q ss_pred c--eeeeeeEE----EecCCccCCccEEEEeeCCCeEEEEEccChhh
Q 013436 392 S--VLRTLIRC----HFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 392 ~--~~~~~~~~----~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~ 432 (443)
. ..-.+..+ ....+||+||.+|+..+.||...+--+...++
T Consensus 330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 3 11111112 23456888999999999999988877766554
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=4.5e-19 Score=154.53 Aligned_cols=215 Identities=17% Similarity=0.198 Sum_probs=160.8
Q ss_pred CCccccCCCCceEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
....+..|..+|.++.|+|.. ..+++.+.||+|++-|++++. .............+..+.|+.+...++++..=|...
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~ 304 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFN 304 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCccEEEeecccceE
Confidence 355678899999999999965 789999999999999998762 222222323444578888999888888888888999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCe----eeEEeeccC
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK----LSLRILAHT 269 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~ 269 (443)
+||.+++...... .. -|+..|.+++++| ...+|++++.|++++|||++.-. +......|.
T Consensus 305 ~iD~R~~~s~~~~--~~-------------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr 369 (498)
T KOG4328|consen 305 VIDLRTDGSEYEN--LR-------------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR 369 (498)
T ss_pred EEEeecCCccchh--hh-------------hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence 9999887542111 11 1444899999999 55689999999999999998642 234445899
Q ss_pred CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC---CCCC--eEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---HLEG--ITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~--v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
..|.+..|+|.++. |++.+.|..|+|||.........+...+.. +... .....|.|+..+++++-.-..|-|+|
T Consensus 370 rsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 99999999977776 889999999999998533223344443331 1112 23456999999999999988899999
Q ss_pred CCC
Q 013436 345 IRK 347 (443)
Q Consensus 345 ~~~ 347 (443)
-..
T Consensus 449 ~~~ 451 (498)
T KOG4328|consen 449 GNG 451 (498)
T ss_pred CCC
Confidence 887
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=4.8e-19 Score=151.59 Aligned_cols=211 Identities=17% Similarity=0.203 Sum_probs=164.8
Q ss_pred cccCCCCceEEEEECCC-CCEEEEEECCCeEEEEECCCCeEE----EEeeecCCccceEEEEEECCC-CCeEEEEECCCe
Q 013436 119 PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPI 192 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~-~~~l~~g~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~ 192 (443)
.+.||+++|..++|+|- ...||+|+.|.+|.||++..+... .....+.+|...|--++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 56899999999999995 567999999999999998765222 234457789999999999996 568889999999
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCC-
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD- 271 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 271 (443)
|.+||+.+++...... |..-|.++.|+.||.+|++.+.|..|+|||.++++.+..-.+|.+.
T Consensus 156 v~iWnv~tgeali~l~-----------------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-----------------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK 218 (472)
T ss_pred EEEEeccCCceeeecC-----------------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence 9999999998654332 4458999999999999999999999999999999999888777653
Q ss_pred eEEEEEeCCCCCEEEEee---CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe-CCCCEEEEeCCC
Q 013436 272 VNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 347 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 347 (443)
-..+.|- .++.++.+|- .+..+-+||...... .-....+. ...+|.---|.+|..++..++ .|+.|+-|.+.+
T Consensus 219 ~~Raifl-~~g~i~tTGfsr~seRq~aLwdp~nl~e-P~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 219 PARAIFL-ASGKIFTTGFSRMSERQIALWDPNNLEE-PIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred cceeEEe-ccCceeeeccccccccceeccCcccccC-cceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 2334454 6677555553 467899999885542 22333333 445677777899988877555 499999999987
Q ss_pred CC
Q 013436 348 MS 349 (443)
Q Consensus 348 ~~ 349 (443)
..
T Consensus 296 d~ 297 (472)
T KOG0303|consen 296 EP 297 (472)
T ss_pred CC
Confidence 54
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=1.2e-18 Score=143.33 Aligned_cols=211 Identities=14% Similarity=0.207 Sum_probs=161.4
Q ss_pred cCCCCceEEEEECCCC-----CEEEEEECCCeEEEEECCCCe-EEE-----EeeecCCccceEEEEEECC-CCCeEEEEE
Q 013436 121 DQTTSRAYVSQFSADG-----SLFVAGFQASQIRIYDVERGW-KIQ-----KDILAKSLRWTVTDTSLSP-DQRHLVYAS 188 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~-----~~l~~g~~d~~i~iwd~~~~~-~~~-----~~~~~~~~~~~v~~i~~s~-~~~~l~~~~ 188 (443)
-.|.-+++.+.|.|+. ++||+++ ..+|+|.+...+ .+. .......+..++++..|+. +-+++.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 3688899999999986 3566654 369999987421 111 1112335667899999986 567888999
Q ss_pred CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEee-
Q 013436 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL- 266 (443)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~- 266 (443)
-|-+..|||++++..-.+..-. -.|..+|.+++|...+ ..|++.+.||.|++||++...-...+.
T Consensus 171 iDTTCTiWdie~~~~~~vkTQL-------------IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQL-------------IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ccCeEEEEEEeeccccceeeEE-------------EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence 9999999999987321111100 1366699999999855 578999999999999998865333332
Q ss_pred --ccCCCeEEEEEeCCCCCEEEEeeCC-CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC-CCEEEEEeCCCCEEE
Q 013436 267 --AHTSDVNTVCFGDESGHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKL 342 (443)
Q Consensus 267 --~~~~~v~~i~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~i 342 (443)
....+...++|++.+.+++|+-..| ..|.+.|+| ....++..+.+|.+.|+.++|.|. ...|++++.|..+.+
T Consensus 238 ~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR---~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qali 314 (364)
T KOG0290|consen 238 DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR---VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALI 314 (364)
T ss_pred CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec---CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEE
Confidence 2256788999999999999987665 479999999 467889999999999999999995 568999999999999
Q ss_pred EeCCCCC
Q 013436 343 WDIRKMS 349 (443)
Q Consensus 343 wd~~~~~ 349 (443)
||+..+-
T Consensus 315 WDl~q~~ 321 (364)
T KOG0290|consen 315 WDLQQMP 321 (364)
T ss_pred Eeccccc
Confidence 9998743
No 170
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=149.33 Aligned_cols=257 Identities=16% Similarity=0.134 Sum_probs=188.6
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCC--eEEEEe--eecCCccceEEEEEECCCCCeEEEEECCCeE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKD--ILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~--~~~~~~--~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 193 (443)
..+.+|.+.|.++.||.++++||+|+.|..+++|+++.. .++.+. .....|...|.+++|...++++.+|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 456899999999999999999999999999999998642 111111 2344577889999999999999999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe-ee--EEeeccCC
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LS--LRILAHTS 270 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~--~~~~~~~~ 270 (443)
..-|+++.+.+.+..... ..+.|+.+..+|..+.|++.+.+|.|.+||.+... .. ..+.....
T Consensus 130 I~HDiEt~qsi~V~~~~~--------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENN--------------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred EeeecccceeeeeecccC--------------cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 999999988776665332 23379999999998899999999999999998764 22 12223456
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee------cCCCCCeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL------MGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
...++.|+|....+|++.+..+-+.+||+|.. ..++... ......-..+.|+|+|..|.+--....-.+||
T Consensus 196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~---~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQ---ARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred cceeeeecCCCceeEEeccccCCCCceeeccc---cchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 67889999999999999999999999999843 2222221 11122336678999999998877766777888
Q ss_pred CCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEe----ccceeeeeeEEEecCCccCCccEEEEeeCCC
Q 013436 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK----GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 420 (443)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg 420 (443)
+-+.++. +..+. |-....++..|+|. +...+++|+.+=
T Consensus 273 ~~S~R~~---------------------------------V~k~D~N~~GY~N~~T~KS~~F~-----~D~~v~tGSD~~ 314 (609)
T KOG4227|consen 273 FISQRCF---------------------------------VLKSDHNPNGYCNIKTIKSMTFI-----DDYTVATGSDHW 314 (609)
T ss_pred eecccce---------------------------------eEeccCCCCcceeeeeeeeeeee-----cceeeeccCccc
Confidence 8762211 11111 11122334445554 334599999999
Q ss_pred eEEEEEccC
Q 013436 421 CVYVYDLVS 429 (443)
Q Consensus 421 ~v~iwd~~~ 429 (443)
.|++|.+..
T Consensus 315 ~i~~WklP~ 323 (609)
T KOG4227|consen 315 GIHIWKLPR 323 (609)
T ss_pred ceEEEecCC
Confidence 999998853
No 171
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4.3e-19 Score=155.83 Aligned_cols=281 Identities=17% Similarity=0.262 Sum_probs=205.5
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC--CCeEEEEECCCeE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIV 193 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~~dg~i 193 (443)
....|..|.+.|..+.|...|..|++|+.|..|.+||...+.... ....+|...|....|-|. .+-+++++.||.|
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l--~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL--SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccc--ccccccccchhhhhccCCCCCcCceeccccCce
Confidence 345789999999999999999999999999999999998875443 355678888888889884 5679999999999
Q ss_pred EEEECCCCc-eeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEee---cc
Q 013436 194 HIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL---AH 268 (443)
Q Consensus 194 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~ 268 (443)
++=.+.... +.....+ ..|.++|.-++.-|+. ..|.+++.|+.+.-+|++++.+...+. .+
T Consensus 212 r~s~i~~t~~~e~t~rl--------------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRL--------------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred eeeeeccccceecceec--------------ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC
Confidence 987764333 2222222 1366789999999955 569999999999999999876544332 23
Q ss_pred CC---CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCC--CceeeeecC------CCCCeEEEEECCCCCEEEEEeCC
Q 013436 269 TS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--GKPAGVLMG------HLEGITFIDSRGDGRYLISNGKD 337 (443)
Q Consensus 269 ~~---~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~~~d 337 (443)
.. ...+++..|.+.+.+++|+.|..+++||.+..... ...+..+.. ....|++++++.++.-|+++-.|
T Consensus 278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnD 357 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYND 357 (559)
T ss_pred CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecc
Confidence 33 56788998888889999999999999999854221 112233322 23479999999877777777778
Q ss_pred CCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEE-EEeccceeeeeeEEEecCCccCCccEEEEe
Q 013436 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA-TYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (443)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg 416 (443)
-.|+++.-.. ....... -..+..+.+. .|+||....++..+-| |-|...|+++|
T Consensus 358 e~IYLF~~~~-~~G~~p~---------------------~~s~~~~~~k~vYKGHrN~~TVKgVNF---fGPrsEyVvSG 412 (559)
T KOG1334|consen 358 EDIYLFNKSM-GDGSEPD---------------------PSSPREQYVKRVYKGHRNSRTVKGVNF---FGPRSEYVVSG 412 (559)
T ss_pred cceEEecccc-ccCCCCC---------------------CCcchhhccchhhcccccccccceeee---ccCccceEEec
Confidence 8899993222 1110000 0000112233 4999998888777655 66689999999
Q ss_pred eCCCeEEEEEccChhhhhHhH
Q 013436 417 SHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 417 ~~dg~v~iwd~~~g~~~~~~~ 437 (443)
+.-|.|.||+-.+++++.-++
T Consensus 413 SDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 413 SDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred CccceEEEEecchhHHHHHhh
Confidence 999999999999999886553
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=5.3e-17 Score=138.21 Aligned_cols=238 Identities=14% Similarity=0.241 Sum_probs=176.3
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC--eEEEEECCCC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSG 201 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg--~i~iwd~~~~ 201 (443)
...+..+.|+.+...|..|+.|| .++|+.+.-.+. .........|..+-|+ ..++|..+.+. .+++++++.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~---~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC---FSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh---hcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence 34577778999999999999988 688887764321 1111222245555565 45677666544 5899998887
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec---cCCCeEEEEEe
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFG 278 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~ 278 (443)
..++...... +|.++.++ -+.|+++-.+. |+|||+++.+.+.++.. +...+.+++++
T Consensus 79 ~~ICe~~fpt-----------------~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 79 TTICEIFFPT-----------------SILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred ceEEEEecCC-----------------ceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccC
Confidence 7665544332 78889886 44577766554 99999999999888763 44456666665
Q ss_pred CCCCCEEEEe--eCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCC-EEEEeCCCCCCccccC
Q 013436 279 DESGHLIYSG--SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNASCN 355 (443)
Q Consensus 279 ~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~ 355 (443)
..+.+++.- ...|.|.+||.. +.+++..+..|.+.+-+++|+++|.+||+++..|+ |||+.+.+
T Consensus 139 -~~n~ylAyp~s~t~GdV~l~d~~----nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-------- 205 (391)
T KOG2110|consen 139 -NANCYLAYPGSTTSGDVVLFDTI----NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-------- 205 (391)
T ss_pred -CCCceEEecCCCCCceEEEEEcc----cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--------
Confidence 445566653 246899999998 88899999999999999999999999999999987 79999988
Q ss_pred CcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
++.+..|+.-..... +++.+|+||+++|++.|..++|+|+.+..-
T Consensus 206 --------------------------G~kl~eFRRG~~~~~----IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 206 --------------------------GQKLYEFRRGTYPVS----IYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred --------------------------ccEeeeeeCCceeeE----EEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 566777765443333 355567779999999999999999998754
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=2.5e-18 Score=141.42 Aligned_cols=209 Identities=14% Similarity=0.211 Sum_probs=161.2
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeee---cCCccceEEEEEECC--CCCeEEEEECCCeEEEE
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~iw 196 (443)
.+-+.|.|+.|.|++..+++-. |..|.+|+++.+..+..... ...++...++-+|+| ++..+++ ..|++++.|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEE
Confidence 4556999999999999888875 78999999998765322211 123456688899999 5666665 567899999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecCCeEEEEECCCC-eeeEEeeccCCCeEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT 274 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~ 274 (443)
|+++......+. . .|...|..+.|+|+-+ +|++|+.||.|+|||.+.. .++..+.+|...|.+
T Consensus 199 D~RT~~~~~sI~--d-------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 199 DLRTMKKNNSIE--D-------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred Eccchhhhcchh--h-------------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 999765433222 2 3555899999999765 6889999999999999865 577889999999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCC-------------------------CCCceeeeecCCCCCeEEEEECCCC-
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLN-------------------------VKGKPAGVLMGHLEGITFIDSRGDG- 328 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~v~~~~~~~~~- 328 (443)
+.|+|...++|++|+.|..|.+|...... .....+.++..|...|++++|+.-.
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 99999899999999999999999755221 0112344677899999999999744
Q ss_pred CEEEEEeCCCCEEEEeCCC
Q 013436 329 RYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~ 347 (443)
-.||+-+.||.+.|=.+..
T Consensus 344 WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eeEEEeccCceEEeecCCh
Confidence 4577889999998866543
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.7e-18 Score=161.17 Aligned_cols=300 Identities=18% Similarity=0.175 Sum_probs=206.8
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC--CCCeEEEEECCCeEEEEECC
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVG 199 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~iwd~~ 199 (443)
+...+...+.|+|-...++++...-.|+|||.+.++.+..+.........|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 4445678889999999999998778899999999987766555555566799998865 45689999999999999843
Q ss_pred CCc--eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee-ccCCCeEEEE
Q 013436 200 SGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVC 276 (443)
Q Consensus 200 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~ 276 (443)
... ............+.... ..... .-+.|.....+|++++.-..|+|||+...+.+..+. +....|+++.
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~-----~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPG-----ARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred ccccCCceeEEeeccccccCcc-----CCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence 321 11111111111111110 01112 456788877777777778899999999888777665 4455678887
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCC--eEEEEECCCCC-EEEEEeCCCCEEEEeCCCCCCccc
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~ 353 (443)
-....|+.+++|..||.|++||.|... ....+.....|... |..+.+.+.|- .|++++.||.|++||+|.......
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~-~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~ 1294 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAP-PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF 1294 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCC-ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc
Confidence 766678999999999999999999654 33567777788777 99999988665 499999999999999998522221
Q ss_pred cCCcccccCc----ccccccCCCCCCcccCCCCeeEEEEeccceeeeee-----------EEEecCCccCCccEEEEeeC
Q 013436 354 CNLGFRSYEW----DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI-----------RCHFSPVYSTGQKYIYTGSH 418 (443)
Q Consensus 354 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~s~d~~~l~tg~~ 418 (443)
. .....| ....+....+...+++...+.+..|.........+ ....+..|+|-.-.+|+|+.
T Consensus 1295 ~---~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~ 1371 (1387)
T KOG1517|consen 1295 L---TIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA 1371 (1387)
T ss_pred c---eeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccC
Confidence 1 112222 34567777788888877777666664322111111 11122345556778899999
Q ss_pred CCeEEEEEccChh
Q 013436 419 DSCVYVYDLVSIQ 431 (443)
Q Consensus 419 dg~v~iwd~~~g~ 431 (443)
|.+|.||....+.
T Consensus 1372 Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1372 DSTVSIYSCEKPR 1384 (1387)
T ss_pred CceEEEeecCCcC
Confidence 9999999876543
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.6e-17 Score=133.48 Aligned_cols=211 Identities=17% Similarity=0.208 Sum_probs=150.0
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCC-------eEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEEC
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 198 (443)
.|..-+|+|.+++|++|..+|.|.+..+..- .-..+......|.++|+.++|. ..+|++++ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 4666789999999999999999999987642 0112233457899999999998 44566654 599999987
Q ss_pred CCCce-eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 199 GSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 199 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
+.... .......+.... .....-....|+++-..|..+-+++++.|+.++-||+++|+....+++|++.|.++.-
T Consensus 89 ~E~~es~~~K~lwe~~~P----~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIP----MQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred hhhhhhccchhhhhhcCc----cccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 64432 111111111000 0000011126889999997777777778999999999999999999999999999988
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC---------C-CCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---------H-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
- .....+++|+.||++++||.+ +.+.+..+.. | ...|.+++. +..+|++|+. ..+.+|.++.
T Consensus 165 R-~~~~qilsG~EDGtvRvWd~k----t~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrs 236 (325)
T KOG0649|consen 165 R-NANGQILSGAEDGTVRVWDTK----TQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRS 236 (325)
T ss_pred c-ccCcceeecCCCccEEEEecc----ccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccC
Confidence 4 455567899999999999999 6776665542 1 224556655 4567887764 5699999999
Q ss_pred CCCc
Q 013436 348 MSSN 351 (443)
Q Consensus 348 ~~~~ 351 (443)
.++.
T Consensus 237 se~t 240 (325)
T KOG0649|consen 237 SEST 240 (325)
T ss_pred CCce
Confidence 6643
No 176
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1e-18 Score=156.21 Aligned_cols=220 Identities=12% Similarity=0.242 Sum_probs=175.8
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCC-----CeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeE
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 193 (443)
.+..|.+.|..++|.|....|++++.||.|.+|+++. ...+.......+|.++|.|++..+++..+.+|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 6788999999999999999999999999999999932 24456667788999999999999999999999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEe--------
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-------- 265 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------- 265 (443)
+.|++....- .. ..++ ...-.....||...|+.+++|+....|++++.||+|++|+.....+ .++
T Consensus 369 ~~w~~p~n~d-p~----ds~d-p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 369 RCWNLPPNQD-PD----DSYD-PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred eeeccCCCCC-cc----cccC-cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 9998763211 00 0000 0001112347889999999999888999999999999998754332 000
Q ss_pred -------------------------------------e-------ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEeccc
Q 013436 266 -------------------------------------L-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301 (443)
Q Consensus 266 -------------------------------------~-------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~ 301 (443)
. .....++-+.++ +...+.+++..|+.|+++|..
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~-~~~~~~~~~hed~~Ir~~dn~- 519 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH-PTADITFTAHEDRSIRFFDNK- 519 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec-CCCCeeEecccCCceeccccc-
Confidence 0 001235566665 667888999999999999998
Q ss_pred CCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 302 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 302 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
++.++.....|...++++++.|+|.+|++++.|+.+++|.+....+
T Consensus 520 ---~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 520 ---TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred ---ccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 8999999999999999999999999999999999999999977443
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.9e-19 Score=167.49 Aligned_cols=248 Identities=18% Similarity=0.301 Sum_probs=185.5
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
...+.+|.++|+|+.|...|.++++|+.|..++||..+++.++. ...+|.+.|+.++.+.+..++++++.|..|++|
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 34678999999999999999999999999999999999886655 578999999999999999999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe--------------ee
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--------------LS 262 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~ 262 (443)
.+..+..+.+.. ||.+.|++++|+|-. +.+.||++++||.+-.- .+
T Consensus 260 rl~~~~pvsvLr----------------ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~ 319 (1113)
T KOG0644|consen 260 RLPDGAPVSVLR----------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLV 319 (1113)
T ss_pred ecCCCchHHHHh----------------ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccce
Confidence 999998776655 688899999999943 77889999999987110 00
Q ss_pred EEee----------------ccCCCeEEEEEe----------CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC
Q 013436 263 LRIL----------------AHTSDVNTVCFG----------DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (443)
Q Consensus 263 ~~~~----------------~~~~~v~~i~~~----------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 316 (443)
..+. .......+++|. .....+.+++-.+..+.+|++. .+...+.+.+|.
T Consensus 320 ~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~----~g~l~H~l~ghs 395 (1113)
T KOG0644|consen 320 DSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY----TGQLLHNLMGHS 395 (1113)
T ss_pred eeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecc----cchhhhhhcccc
Confidence 0000 000011111221 0111233344455667888887 788888899999
Q ss_pred CCeEEEEECCCC-CEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEE-ecccee
Q 013436 317 EGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVL 394 (443)
Q Consensus 317 ~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 394 (443)
..+..+.++|-. +...+++.||...|||+-.+.+ ++.| .+|..
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p----------------------------------ik~y~~gh~k- 440 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP----------------------------------IKHYFIGHGK- 440 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCceEeeecccCCc----------------------------------ceeeecccce-
Confidence 999999999955 4455889999999999988543 3333 23321
Q ss_pred eeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhh
Q 013436 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 395 ~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~ 432 (443)
.+.-.||+||..++....-|.++|.....++.
T Consensus 441 ------l~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 441 ------LVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ------eeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 23445888999999888889999987765554
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1.3e-16 Score=146.12 Aligned_cols=252 Identities=16% Similarity=0.182 Sum_probs=159.1
Q ss_pred CCceEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC-CCeEEEEECCCC
Q 013436 124 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 201 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg~i~iwd~~~~ 201 (443)
.+....++++|++++|++++ .++.|.+|++.....+...... ........++|+|++++|++++. ++.|.+|++.+.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 35677899999999987765 4788999999732122211111 12224678999999998888764 789999999743
Q ss_pred cee-ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEE-----ee-ccCCCeE
Q 013436 202 TME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLR-----IL-AHTSDVN 273 (443)
Q Consensus 202 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-----~~-~~~~~v~ 273 (443)
... ....... +......++++|+++++++++ .++.|.+||+.+...+.. .. .......
T Consensus 113 g~~~~~~~~~~--------------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~ 178 (330)
T PRK11028 113 GIPVAPIQIIE--------------GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR 178 (330)
T ss_pred CCCCCceeecc--------------CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence 211 1111000 111456788999999886555 568999999976432211 11 1234567
Q ss_pred EEEEeCCCCCEEEEeeC-CCeEEEEecccCCCCCceeeeecCC------CCCeEEEEECCCCCEEEEEeC-CCCEEEEeC
Q 013436 274 TVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK-DQAIKLWDI 345 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~ 345 (443)
.+.|+ +++++++++.. ++.|.+||+.......+.+..+..+ ......+.++|++++|+++.. ++.|.+|++
T Consensus 179 ~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 179 HMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred eEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 89997 78888877765 8999999997321111233333221 112346889999999988754 789999999
Q ss_pred CCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC-CCeEEE
Q 013436 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYV 424 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~-dg~v~i 424 (443)
..... ...+.++.... .......++|||++|+++.. +++|.+
T Consensus 258 ~~~~~----------------------------------~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 258 SEDGS----------------------------------VLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred eCCCC----------------------------------eEEEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEE
Confidence 65211 11122221100 01122347779999998775 899999
Q ss_pred EEcc
Q 013436 425 YDLV 428 (443)
Q Consensus 425 wd~~ 428 (443)
|++.
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9874
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=1.8e-16 Score=150.58 Aligned_cols=252 Identities=32% Similarity=0.487 Sum_probs=192.3
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCe-EEEEeeecCCccceEEEEEE-CCCCC-eEEEEEC-CCeEE
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSL-SPDQR-HLVYASM-SPIVH 194 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~i~~-s~~~~-~l~~~~~-dg~i~ 194 (443)
.+..|...+.++.|.+.+..++.++.|+.+.+|+...+. .......... ..+..+.+ ++++. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEE
Confidence 567899999999999999999999999999999998875 3332222111 35667777 88887 5555444 89999
Q ss_pred EEECCC-CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECCCCeeeEEeeccCCCe
Q 013436 195 IVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDV 272 (443)
Q Consensus 195 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v 272 (443)
+|+... ........ .|...|..++|+|++..+++++. ++.+++|++..+..+..+..|...|
T Consensus 138 ~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 138 LWDLSTPGKLIRTLE----------------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred EEEecCCCeEEEEEe----------------cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 999987 32222111 35568999999999998888885 9999999999988888888899999
Q ss_pred EEEEEeCCCCC-EEEEeeCCCeEEEEecccCCCCCceee-eecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 273 NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 273 ~~i~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
.+++|+ +++. .+++++.|+.|++||.. .+..+. .+.+|.... ...|+|++.++++++.|+.+++|+++....
T Consensus 202 ~~~~~~-~~~~~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 202 SSLAFS-PDGGLLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred EEEEEc-CCcceEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 999998 6666 56556999999999887 667776 688887775 448999998999999999999999987432
Q ss_pred ccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
.+..+.+|.. .+..+. |+|++..+++++.|+.+.+||+.+.
T Consensus 276 ---------------------------------~~~~~~~~~~--~v~~~~----~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 276 ---------------------------------LLRTLSGHSS--SVLSVA----FSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred ---------------------------------EEEEEecCCc--cEEEEE----ECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 1233344532 222223 4557888888999999999998876
Q ss_pred hhh
Q 013436 431 QIL 433 (443)
Q Consensus 431 ~~~ 433 (443)
...
T Consensus 317 ~~~ 319 (466)
T COG2319 317 KLL 319 (466)
T ss_pred ceE
Confidence 644
No 180
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=2e-18 Score=156.24 Aligned_cols=204 Identities=21% Similarity=0.245 Sum_probs=152.4
Q ss_pred EECCCCCEEEE--EECCCeEEEEECCCCeEEEE-eeecCCccceEEEEEECC-CCCeEEEEECCCeEEEEECCCCceecc
Q 013436 131 QFSADGSLFVA--GFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESL 206 (443)
Q Consensus 131 ~~s~~~~~l~~--g~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 206 (443)
-|+.+..++|+ .+..|.|-||++.....+.. ....-.....|+++.|.| |...||+++.||.|++|.+..+.....
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 35556666665 45578999999976433221 111112334699999999 678899999999999999988765443
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEE
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 285 (443)
...... ....|...|+++.|+| -...|++++.|.+|.+||+++.+...++.+|.+.|..++|+ ++|+.+
T Consensus 666 ~~tPe~---------~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWS-pdGr~~ 735 (1012)
T KOG1445|consen 666 EMTPEK---------ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWS-PDGRRI 735 (1012)
T ss_pred cCCcce---------eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEEC-CCCcce
Confidence 332221 1235777999999999 56789999999999999999999999999999999999998 999999
Q ss_pred EEeeCCCeEEEEecccCCCCCceeeeecCCC-CCeEEEEECCCCCEEEEEeCC----CCEEEEeCCC
Q 013436 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKD----QAIKLWDIRK 347 (443)
Q Consensus 286 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d----g~i~iwd~~~ 347 (443)
++.+.||+|++|..+. ..+++..-.+.. ..--.|.|.-+|+++++.+.| ..|.+||..+
T Consensus 736 AtVcKDg~~rVy~Prs---~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEPRS---REQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred eeeecCceEEEeCCCC---CCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 9999999999999983 223443333221 223456788899999988765 4688888776
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=4.1e-18 Score=151.39 Aligned_cols=210 Identities=16% Similarity=0.183 Sum_probs=162.6
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCc
Q 013436 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (443)
Q Consensus 137 ~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 216 (443)
..|+.++.||.+.|.+-.. .+.+ ....|.+.+.+-.|+|||.-|++++.||.|++|.-. |.......-
T Consensus 76 d~~~i~s~DGkf~il~k~~--rVE~--sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q------- 143 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA--RVER--SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQ------- 143 (737)
T ss_pred ceEEEEcCCceEEEecccc--hhhh--hhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhh-------
Confidence 5688888999999987543 2222 456788899999999999999999999999999844 433332211
Q ss_pred eeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEE
Q 013436 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296 (443)
Q Consensus 217 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i 296 (443)
...+|.|++|.|+.+.++.+. .+.+.|=.+.....+.+.++|.+-|.++.|+ +..+++++|+.|...++
T Consensus 144 ---------~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 144 ---------NEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKI 212 (737)
T ss_pred ---------cCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEe
Confidence 112899999999888776653 5668888888887788899999999999998 77889999999999999
Q ss_pred EecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCc
Q 013436 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (443)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (443)
||- .+..+..-..|..+|++++|+|+ ..++.++. +++++=..+.
T Consensus 213 WD~-----~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~----------------------------- 256 (737)
T KOG1524|consen 213 WDA-----QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSPRV----------------------------- 256 (737)
T ss_pred ecc-----cCcccccCChhccceeeeeeccc-cceeeeee-eeeeecCCCc-----------------------------
Confidence 998 57888888889999999999999 55666554 3455222221
Q ss_pred ccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEc
Q 013436 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (443)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~ 427 (443)
..+|...||+||..+++|+..|.|.+=-+
T Consensus 257 ----------------------GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 257 ----------------------GSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ----------------------cceEEEEEcCCCceeeccccCceEEEeee
Confidence 23456667889999999999998766433
No 182
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=3.8e-17 Score=136.49 Aligned_cols=212 Identities=16% Similarity=0.114 Sum_probs=171.1
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEEC-CCC
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~-~~~ 201 (443)
...+|+|.+|++|+..+|++.....|.||.............+..|...|+.|.|+|..+.|++++.|..-++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 3578999999999999999999999999998877655666678899999999999999999999999999999998 555
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeee----EEeeccCCCeEEEEE
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS----LRILAHTSDVNTVCF 277 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~i~~ 277 (443)
+......+.. +...++++.|+|.++.|++|+....|.||-.+...-- ..-+.+.+.|+++.|
T Consensus 89 ~WkptlvLlR--------------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 89 TWKPTLVLLR--------------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred eeccceeEEE--------------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence 5554444433 4448999999999999999999999999987654321 122356788999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCC--------------CCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEE
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNV--------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 343 (443)
+ +++-++++|+.|+.++++..--... -+..+.++....+.|..+.|+|+|..|+-.+.|.++.+-
T Consensus 155 h-pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 155 H-PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred c-CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 8 8888999999999999987431110 122233343456789999999999999999999999999
Q ss_pred eCCCCC
Q 013436 344 DIRKMS 349 (443)
Q Consensus 344 d~~~~~ 349 (443)
|...+.
T Consensus 234 da~~p~ 239 (361)
T KOG1523|consen 234 DAAGPS 239 (361)
T ss_pred ecCCCc
Confidence 988754
No 183
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.4e-18 Score=146.72 Aligned_cols=197 Identities=17% Similarity=0.189 Sum_probs=149.1
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccc
Q 013436 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 207 (443)
.+++|+++|..|++|+.||.+|||+...... ......|...|.++.|+||+++|++.+.| ..+||+.+++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh---hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 8999999999999999999999999766433 23455677889999999999999999999 8999999998443332
Q ss_pred cceecccCceeeccCCCCceecEEEEEEeCCC---CE--EEEEecCCeEEEEECCCCee-----eEEeeccCCCeEEEEE
Q 013436 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG---RE--LVAGSSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCF 277 (443)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~---~~--l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~i~~ 277 (443)
.... .......+.|+.|+ .+ ++.....+.|..||+..... ..+.......|.++++
T Consensus 224 t~~~--------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 224 TPFS--------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred CCcc--------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 2111 12245667888766 32 23333445677776543321 1122233457999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCceeee-ecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+ .+|++++.|+.||.|-|++.. ..+.+.. -..|...|+.+.|+|+.+++++.+.|....|..+.-
T Consensus 290 S-~dGkf~AlGT~dGsVai~~~~----~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 290 S-DDGKFLALGTMDGSVAIYDAK----SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred c-CCCcEEEEeccCCcEEEEEec----eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 7 999999999999999999997 5455443 357999999999999999999999999999887765
No 184
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=1.1e-18 Score=152.31 Aligned_cols=198 Identities=18% Similarity=0.268 Sum_probs=169.7
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
.-.-+.+.++.+|++|+.|+..|.|-.+|..++.....+... ..|.++.|-.+.+++|++ ....++|||-..-++
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~----Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM----ETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh----hhhhhhhhhcchHHHHhh-hhceEEEecCCCcEE
Confidence 345688999999999999999999999999998555443332 358999999888888775 557899999776555
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (443)
.++.... +|..+.|-|..-+|++++..|.+..-|+.+|+.+..+....+.+..|+-+ |-+-
T Consensus 204 HClk~~~------------------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~Na 264 (545)
T KOG1272|consen 204 HCLKRHI------------------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNA 264 (545)
T ss_pred eehhhcC------------------chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC-Cccc
Confidence 4443322 68889999999999999999999999999999999998888999999998 6667
Q ss_pred EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
.+-+|..+|+|.+|... ..+++..+..|.++|.+|++.++|+|++|.+.|..++|||+|+..
T Consensus 265 Vih~GhsnGtVSlWSP~----skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPN----SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred eEEEcCCCceEEecCCC----CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 88899999999999998 788888888999999999999999999999999999999999944
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=148.82 Aligned_cols=231 Identities=14% Similarity=0.218 Sum_probs=166.4
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC--CCeEEEEECCCeE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIV 193 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~~dg~i 193 (443)
....+.||.+.|.|++|+.+|.+|++|+.|-.+.|||....+.+.. ...+|...|.++.|-|. .+.+++|+.|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 3457899999999999999999999999999999999986544443 45689999999999984 5788899999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCeee-------EE-
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLS-------LR- 264 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-------~~- 264 (443)
+++|+...+.... ..+.......-..|...|..++..|++ ..+.++++||+|+-+|++..... ..
T Consensus 120 ~lfdl~~~~~~~~------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 120 KLFDLDSSKEGGM------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred EEEeccccccccc------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 9999985322110 011111111122466688899999988 78999999999999999874211 11
Q ss_pred --eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC--------------CCceeeeec-CCC-----------
Q 013436 265 --ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------------KGKPAGVLM-GHL----------- 316 (443)
Q Consensus 265 --~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~-~~~----------- 316 (443)
+...--...++.++|.+..+|++|+.|-..++||.|.... ...++..+. +|.
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 1112234678999999999999999999999999552110 011233222 221
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
..++.++|+|+|.-|++.-....|+++|+...+....+
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 12567889999987776666668999999987765444
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=5.2e-15 Score=126.23 Aligned_cols=196 Identities=14% Similarity=0.192 Sum_probs=151.4
Q ss_pred eEEEEECCCCCEEEEEECC--CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee
Q 013436 127 AYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
|--+-|| ..++|..+.+ +.+++++...+..+....... +|.++.++. +.|+++-.+. |+|||+++.+..
T Consensus 49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt----~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklL 119 (391)
T KOG2110|consen 49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT----SILAVRMNR--KRLVVCLEES-IYIYDIKDMKLL 119 (391)
T ss_pred EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEecCC----ceEEEEEcc--ceEEEEEccc-EEEEecccceee
Confidence 4444555 4466655543 459999998887776654443 499999864 4566655544 999999998876
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe--cCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCC
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 282 (443)
........ +..++.++.+++.+.+++.-+ ..|.|.+||+.+-+.+..+..|.+.+-+++|+ ++|
T Consensus 120 hTI~t~~~-------------n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs-~~G 185 (391)
T KOG2110|consen 120 HTIETTPP-------------NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS-PDG 185 (391)
T ss_pred hhhhccCC-------------CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC-CCC
Confidence 65554322 222577777777777887643 36899999999999999999999999999998 999
Q ss_pred CEEEEeeCCCe-EEEEecccCCCCCceeeeecCC--CCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 283 HLIYSGSDDNL-CKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 283 ~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
.+||+++..|+ |+|+.+. +++.+.+|..- ...|.+++|+|++++|++.+..++|+||.+....
T Consensus 186 ~llATASeKGTVIRVf~v~----~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVP----EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CEEEEeccCceEEEEEEcC----CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999985 7999997 88888887633 3468899999999999999999999999998754
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.6e-16 Score=148.13 Aligned_cols=162 Identities=14% Similarity=0.072 Sum_probs=123.5
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCC-CeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 199 (443)
..|.-.++|.++||+++++|+|..||.|.+|.--. ..........+=|..+|.+++|+++|.+|++|+..|.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 45677799999999999999999999999996433 11222334456677789999999999999999999999999999
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec-----------c
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-----------H 268 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~ 268 (443)
+++.....++. ++|..+.++||+.+.+....|..|.+....+......+.+ .
T Consensus 282 T~~kqfLPRLg-----------------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~ 344 (792)
T KOG1963|consen 282 TGKKQFLPRLG-----------------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRP 344 (792)
T ss_pred CCCcccccccC-----------------CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccc
Confidence 99854444332 2899999999999999999999999998765543333221 1
Q ss_pred CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecc
Q 013436 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~ 300 (443)
.+-.+.++++ +..+.++..+..|.|.+||+-
T Consensus 345 ~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~ 375 (792)
T KOG1963|consen 345 QSLTTGVSID-PRTNSLVLNGHPGHVQFYDLY 375 (792)
T ss_pred cccceeEEEc-CCCCceeecCCCceEEEEecc
Confidence 3345666775 555666677777888888765
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.1e-16 Score=151.06 Aligned_cols=202 Identities=17% Similarity=0.147 Sum_probs=136.5
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEECC---CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-C
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-M 189 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~ 189 (443)
......+..|...+...+|||||+.|+..+.+ ..|++||+.++.... .....++ ...++|+|||+.|++++ .
T Consensus 193 g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~---~~~~~wSPDG~~La~~~~~ 268 (429)
T PRK01742 193 GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGH---NGAPAFSPDGSRLAFASSK 268 (429)
T ss_pred CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCc---cCceeECCCCCEEEEEEec
Confidence 34456677888899999999999999987653 369999998874322 2222332 34689999999888765 6
Q ss_pred CCeEEE--EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe-cCCeEEEEECCCC-eeeEEe
Q 013436 190 SPIVHI--VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEAN-KLSLRI 265 (443)
Q Consensus 190 dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~ 265 (443)
+|.+.| ||+.++....+.. +...+....|+|||+.|+.++ .+|...||++... .....+
T Consensus 269 ~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 269 DGVLNIYVMGANGGTPSQLTS-----------------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCcEEEEEEECCCCCeEeecc-----------------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 776555 5666655432211 222567899999999877655 4677777776432 222223
Q ss_pred eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
.+.. ....|+ ++++.|+..+.++ +.+||+. .+........+ ....+.|+|+|++|+.++.++.+.+|++
T Consensus 332 -~~~~--~~~~~S-pDG~~ia~~~~~~-i~~~Dl~----~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 332 -GGRG--YSAQIS-ADGKTLVMINGDN-VVKQDLT----SGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -cCCC--CCccCC-CCCCEEEEEcCCC-EEEEECC----CCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 3333 457887 7888888877765 5558987 44433222222 2356789999999999999999888876
Q ss_pred CC
Q 013436 346 RK 347 (443)
Q Consensus 346 ~~ 347 (443)
..
T Consensus 401 ~~ 402 (429)
T PRK01742 401 VS 402 (429)
T ss_pred EE
Confidence 43
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=3.4e-15 Score=141.80 Aligned_cols=209 Identities=27% Similarity=0.415 Sum_probs=160.4
Q ss_pred CCccccCCC-CceEEEEE-CCCCC-EEEEEEC-CCeEEEEECCC-CeEEEEeeecCCccceEEEEEECCCCCeEEEEEC-
Q 013436 116 GPWPVDQTT-SRAYVSQF-SADGS-LFVAGFQ-ASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM- 189 (443)
Q Consensus 116 ~~~~~~~h~-~~v~~~~~-s~~~~-~l~~g~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~- 189 (443)
....+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ..... ....|...|..++|+|++..+++++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~ 176 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGKLLASGSSL 176 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCCEEEecCCC
Confidence 334444433 37777777 88887 5555444 89999999987 43333 35567778999999999998888885
Q ss_pred CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecCCeEEEEECCCCeeeE-Eeec
Q 013436 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSL-RILA 267 (443)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~ 267 (443)
++.+++|++..+....... +|...|.+++|+|++. .+++++.|+.|++||...+.... .+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~ 240 (466)
T COG2319 177 DGTIKLWDLRTGKPLSTLA----------------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240 (466)
T ss_pred CCceEEEEcCCCceEEeec----------------cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC
Confidence 9999999998744433322 2556899999999998 55555899999999998777777 5778
Q ss_pred cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
|...+ ...|+ +++.++++++.|+.+++|+.+... ..+..+.+|...+.++.|+|++..+++++.|+.+++||+..
T Consensus 241 ~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 241 HSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSS---SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315 (466)
T ss_pred CCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCC---cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence 87775 44786 666888899999999999998332 12444467889999999999888998898898999998887
Q ss_pred C
Q 013436 348 M 348 (443)
Q Consensus 348 ~ 348 (443)
.
T Consensus 316 ~ 316 (466)
T COG2319 316 G 316 (466)
T ss_pred C
Confidence 3
No 190
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=1e-17 Score=151.69 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=128.2
Q ss_pred ECCCCCeEEE--EECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEE
Q 013436 177 LSPDQRHLVY--ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYV 253 (443)
Q Consensus 177 ~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i 253 (443)
|+.+...+|+ ++..|.|-||+++......--.+.... ....|++++|.| |...|+++++||.|++
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~------------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~l 654 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF------------NGTLVTDLHWDPFDDERLAVATDDGQINL 654 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc------------cCceeeecccCCCChHHeeecccCceEEE
Confidence 4445555554 566789999999765433222222111 223799999999 7788999999999999
Q ss_pred EECCCC-------eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC
Q 013436 254 YDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (443)
Q Consensus 254 wd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (443)
|.+..+ .+...+..|...|+++.|+|--.+.|++++.|.+|++||++ +.+....+.+|...|..++|+|
T Consensus 655 Wr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~----~~~~~~~l~gHtdqIf~~AWSp 730 (1012)
T KOG1445|consen 655 WRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA----NAKLYSRLVGHTDQIFGIAWSP 730 (1012)
T ss_pred EEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh----hhhhhheeccCcCceeEEEECC
Confidence 998654 34566789999999999998888999999999999999999 7888889999999999999999
Q ss_pred CCCEEEEEeCCCCEEEEeCCCCC
Q 013436 327 DGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
+|+.+++.+.||+|++|+-++..
T Consensus 731 dGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 731 DGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred CCcceeeeecCceEEEeCCCCCC
Confidence 99999999999999999998853
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=4.2e-17 Score=148.68 Aligned_cols=238 Identities=16% Similarity=0.147 Sum_probs=172.5
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceec
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (443)
.|+.++|-|||..|+.+.. ..+.+||...|..++ .+.+|...|.+++|+.||+.+|+|+.|..|.+|+-.-.....
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccc---ccccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence 7999999999998887754 579999999996555 578999999999999999999999999999999865332221
Q ss_pred cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEE
Q 013436 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 285 (443)
. .|...|.|+.|+|-...|++++-+. .-+|........ +. .....|.+.+|. .+|.++
T Consensus 90 Y------------------SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~-K~-kss~R~~~CsWt-nDGqyl 147 (1081)
T KOG1538|consen 90 Y------------------SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVS-KH-KSSSRIICCSWT-NDGQYL 147 (1081)
T ss_pred e------------------ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHH-hh-hhheeEEEeeec-CCCcEE
Confidence 1 2666899999999988899987653 678987655432 21 234578899997 999999
Q ss_pred EEeeCCCeEEEEecccCCCCCcee---eeecCCCCCeEEEEECCCC-----CEEEEEeCCCCEEEEeCCCCCCccccCCc
Q 013436 286 YSGSDDNLCKVWDRRCLNVKGKPA---GVLMGHLEGITFIDSRGDG-----RYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (443)
Q Consensus 286 ~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (443)
+.|-.||+|.+-+- .++.. ...-+..++|.+++|+|.. ..+++.....++.+|.+...
T Consensus 148 alG~~nGTIsiRNk-----~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--------- 213 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNK-----NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--------- 213 (1081)
T ss_pred EEeccCceEEeecC-----CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---------
Confidence 99999999999765 33333 3334578899999999963 35667777777777766541
Q ss_pred ccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
.+..-+.-...- .+..|-|+|.|+..||.|+.+.+|-- .|-.+.++
T Consensus 214 --------------------------~Igk~r~L~FdP------~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTv 259 (1081)
T KOG1538|consen 214 --------------------------QIGKDRALNFDP------CCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTV 259 (1081)
T ss_pred --------------------------eecccccCCCCc------hhheeccCCcEEEEccCCCceEEEee-cCeEEeec
Confidence 111000000000 01124458999999999999999864 34444433
No 192
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.75 E-value=1.1e-15 Score=136.36 Aligned_cols=209 Identities=16% Similarity=0.267 Sum_probs=145.1
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecC-CccceEEEEEE-----CCCCCeEEEEECCCeEEEEECC
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSL-----SPDQRHLVYASMSPIVHIVDVG 199 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~i~~-----s~~~~~l~~~~~dg~i~iwd~~ 199 (443)
.+....++-.|++|+-.-. ..+.+|+...+..+...+... -.....++-+| .|++--|++|-..|.|++.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 4556666667777776543 568999887542222211110 01112333344 3456678888888999999877
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCC-------------------
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN------------------- 259 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~------------------- 259 (443)
..+....++..... .+..|+++.|-| +...++++..+|.+++||..-.
T Consensus 204 ~~~~sklfne~r~i------------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i 271 (636)
T KOG2394|consen 204 NFEVSKLFNEERLI------------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAI 271 (636)
T ss_pred hhHHHHhhhhcccc------------cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEE
Confidence 64443333322211 224899999999 4457778888999999976311
Q ss_pred ---------eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCE
Q 013436 260 ---------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (443)
Q Consensus 260 ---------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 330 (443)
.++..+.--.+.|+.++|+ +++++||+.+.||.++|||.. ..+.+..+..--+...|++|+|||+|
T Consensus 272 ~t~ksk~~rNPv~~w~~~~g~in~f~FS-~DG~~LA~VSqDGfLRvF~fd----t~eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 272 LTSKSKKTRNPVARWHIGEGSINEFAFS-PDGKYLATVSQDGFLRIFDFD----TQELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred eeeeccccCCccceeEeccccccceeEc-CCCceEEEEecCceEEEeecc----HHHHHHHHHhhccceEEEEEcCCccE
Confidence 1122222234578999998 699999999999999999998 66777777777789999999999999
Q ss_pred EEEEeCCCCEEEEeCCCCCCcc
Q 013436 331 LISNGKDQAIKLWDIRKMSSNA 352 (443)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~ 352 (443)
|++|+.|.-|.||.+...+.+.
T Consensus 347 IvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred EEecCCcceEEEEEeccceEEE
Confidence 9999999999999998855433
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.2e-16 Score=150.70 Aligned_cols=220 Identities=20% Similarity=0.199 Sum_probs=148.3
Q ss_pred CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC---CeEEEEECCCCceeccccceecccCceeecc
Q 013436 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (443)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (443)
+..|.+||.+... .. ....+...+...+|||||+.|++++.+ ..|++||+.+++...+....
T Consensus 183 ~~~i~i~d~dg~~-~~---~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~----------- 247 (429)
T PRK01742 183 PYEVRVADYDGFN-QF---IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR----------- 247 (429)
T ss_pred eEEEEEECCCCCC-ce---EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-----------
Confidence 4689999987653 22 233455679999999999999987754 37999999887643332211
Q ss_pred CCCCceecEEEEEEeCCCCEEEEEe-cCCe--EEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEe-eCCCeEEEE
Q 013436 222 DDGGYSFGIFSLKFSTDGRELVAGS-SDDC--IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVW 297 (443)
Q Consensus 222 ~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~-~~d~~i~iw 297 (443)
+ ....++|+|||+.|+.++ .+|. |++||+.+++ ...+..+...+....|+ ++++.|+.. ..++...||
T Consensus 248 ---g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 ---G---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred ---C---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEE
Confidence 1 233589999999888765 5775 4555776665 45566677778899998 677766554 467888899
Q ss_pred ecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcc
Q 013436 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (443)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (443)
++... +.....+ .+.. ..+.|+|+|++|+..+.++ +.+||+.+...
T Consensus 320 ~~~~~---~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~--------------------------- 365 (429)
T PRK01742 320 RMSAS---GGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST--------------------------- 365 (429)
T ss_pred EEECC---CCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe---------------------------
Confidence 87632 2222222 3333 4578999999998887765 66699877321
Q ss_pred cCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc--ChhhhhHh
Q 013436 378 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV--SIQILFCR 436 (443)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~--~g~~~~~~ 436 (443)
. .+.... ...+|.|+|||++|+.++.+|.+.+|++. +|+.+..+
T Consensus 366 -------~-~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 366 -------E-VLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred -------E-EecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 1 111110 01356788899999999999988888764 46655444
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=9.9e-16 Score=148.79 Aligned_cols=283 Identities=13% Similarity=0.124 Sum_probs=179.8
Q ss_pred ccccCCCCceEEEEECCCC-CEEEEEECCCeEEEEECCCC----eEEEEeeecCCccceEEEEEECCCCCeEEEEECCCe
Q 013436 118 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~ 192 (443)
..+..|...|..++.++.. .++++|+.||+|++|++..- ...............+.++...+.+..+|+++.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 3556789999999988765 99999999999999998642 112222233335567999999999999999999999
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCC-EEEEEecCCeEEEEECCCCeeeEEee--cc
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AH 268 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~ 268 (443)
|++.+++...............+. .....-|..-+|.. ... .++.+...+.|..||++......+++ ..
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~-------~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNL-------KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEEEEccccccccceeeeeecccc-------cCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 999999863221111111100000 00111233333333 233 68888888999999998876555443 34
Q ss_pred CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec-CCCCCeEEEEECCC---CCEEEEEe--CCCCEEE
Q 013436 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGD---GRYLISNG--KDQAIKL 342 (443)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~s~~--~dg~i~i 342 (443)
.+.|++++.+ +.+++++.|+..|.+.+||+| -..++..+. ++..+|..+..+|- ....++++ ..+.|.+
T Consensus 1195 hG~vTSi~id-p~~~WlviGts~G~l~lWDLR----F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1195 HGLVTSIVID-PWCNWLVIGTSRGQLVLWDLR----FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred ccceeEEEec-CCceEEEEecCCceEEEEEee----cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 5789999996 888899999999999999999 566666554 45578888887763 24555444 4788999
Q ss_pred EeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeE
Q 013436 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 422 (443)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v 422 (443)
|++.++.+...+........ ..+..-+.+.+ + ......+.+.+ ...+.++.+|+.|+.|
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~--ls~~~Ps~~~~-------------k--p~~~~~~~~~~----~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPI--LSYALPSNDAR-------------K--PDSLAGISCGV----CEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred eecccCcceEEEEcCCCCcc--hhhhcccccCC-------------C--CCcccceeeec----ccCCceeeecCCccce
Confidence 99998654333221100000 00000000000 0 01111112221 1247789999999999
Q ss_pred EEEEccChhhh
Q 013436 423 YVYDLVSIQIL 433 (443)
Q Consensus 423 ~iwd~~~g~~~ 433 (443)
+.||....+..
T Consensus 1329 R~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1329 RKWDPTRPEIS 1339 (1431)
T ss_pred eeccCCCcccc
Confidence 99999766544
No 195
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=1e-16 Score=137.94 Aligned_cols=168 Identities=15% Similarity=0.190 Sum_probs=139.6
Q ss_pred ceEEEEEECCCCC-eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC
Q 013436 170 WTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (443)
Q Consensus 170 ~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 248 (443)
.+|..+.|.++.. .|++|+.|..|++|.++.+....-.. .........+|...|+++.|+|+|..|++|+.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~-------~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDM-------KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCce-------eEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 4699999998876 99999999999999987664432100 001112345688899999999999999999999
Q ss_pred CeEEEEECC--------C--------CeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee
Q 013436 249 DCIYVYDLE--------A--------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (443)
Q Consensus 249 g~i~iwd~~--------~--------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 312 (443)
|.|.+|-.. + ....+.+.+|...|..++|+ ++++++++++.|..+++||+. .+.....+
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns~~l~Dv~----~G~l~~~~ 161 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNSVRLWDVH----AGQLLAIL 161 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeeccceEEEEEec----cceeEeec
Confidence 999999765 2 22345567899999999998 999999999999999999999 89999999
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 313 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 313 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
..|..-+..++|.|-++++++-+.|...+.+.+...+
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred cccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence 9999999999999999999999999888888776633
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=7.1e-17 Score=144.03 Aligned_cols=239 Identities=20% Similarity=0.217 Sum_probs=165.1
Q ss_pred ecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC--CCCE
Q 013436 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRE 241 (443)
Q Consensus 164 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~ 241 (443)
.+.+|++-|.+++|+.+|.+|++|+.|-.+.|||.-..+..... ..||...|.++.|-| +.+.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI---------------~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI---------------STGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee---------------ecccccceeEEeeeccCCCeE
Confidence 46799999999999999999999999999999998755543332 236888999999999 5678
Q ss_pred EEEEecCCeEEEEECCCC----------eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC---CCce
Q 013436 242 LVAGSSDDCIYVYDLEAN----------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---KGKP 308 (443)
Q Consensus 242 l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~ 308 (443)
+++|..|..|+++|+... .....+..|...|..|+..|...+.+.+++.||+|+-+|+|.... ...+
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence 999999999999999752 233445578999999999877779999999999999999994211 0111
Q ss_pred e---eeecCCCCCeEEEEECCC-CCEEEEEeCCCCEEEEeCCCCCCc-cccCCcccccCcccccccCCCCCCcccCCCCe
Q 013436 309 A---GVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSN-ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (443)
Q Consensus 309 ~---~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (443)
. ..+....-...+++.+|. ..+|++|+.|-..++||.|...+. ...-........+.+
T Consensus 190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~----------------- 252 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCR----------------- 252 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccc-----------------
Confidence 1 111122235678899995 467899999999999997653221 111110011111111
Q ss_pred eEEEEe-ccc-----eeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 384 SVATYK-GHS-----VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 384 ~~~~~~-~~~-----~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
++.-|. +|. .....+.++....|+|+|.-|+..-..-.|+++|+..++...
T Consensus 253 cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 253 CVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred hhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 111111 111 112233445556788899887777777789999999877543
No 197
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=8.9e-17 Score=144.81 Aligned_cols=219 Identities=17% Similarity=0.198 Sum_probs=165.7
Q ss_pred eecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCC-------------------
Q 013436 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------------- 223 (443)
Q Consensus 163 ~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 223 (443)
....+|.+.|.+|...|.|.+|++|+.||+|+||.+.++.++....+......+.+.+...
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 3456899999999999999999999999999999999998876554433222211111110
Q ss_pred --------------------------------------------CCceecEEEEEEeCCCCEEEEEecC---CeEEEEEC
Q 013436 224 --------------------------------------------GGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDL 256 (443)
Q Consensus 224 --------------------------------------------~~~~~~i~~l~~~~~~~~l~~~~~d---g~i~iwd~ 256 (443)
-.|...|..+.|+..|.||++...+ ..|.|+++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 0144568889999999999987654 56999999
Q ss_pred CCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 013436 257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 336 (443)
...+....|....+.|.++.|+ +...+|++++. ..|+|||+. ....+..+......|..++.+|.|..|+.++.
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FH-Ps~p~lfVaTq-~~vRiYdL~----kqelvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFH-PSKPYLFVATQ-RSVRIYDLS----KQELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred ccccccCchhhcCCceeEEEec-CCCceEEEEec-cceEEEehh----HHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 8877666676677889999998 55556666654 489999997 67777777777788999999999999999999
Q ss_pred CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEe
Q 013436 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (443)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg 416 (443)
|+.+..+|+.-.+ +..+++.-|....+ +++|++.-.++++|
T Consensus 628 d~k~~WfDldlss---------------------------------kPyk~lr~H~~avr------~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 628 DKKMCWFDLDLSS---------------------------------KPYKTLRLHEKAVR------SVAFHKRYPLFASG 668 (733)
T ss_pred CCeeEEEEcccCc---------------------------------chhHHhhhhhhhhh------hhhhccccceeeee
Confidence 9999999997632 33455666663322 23344456789999
Q ss_pred eCCCeEEEEE
Q 013436 417 SHDSCVYVYD 426 (443)
Q Consensus 417 ~~dg~v~iwd 426 (443)
+.||.+.|+-
T Consensus 669 sdDgtv~Vfh 678 (733)
T KOG0650|consen 669 SDDGTVIVFH 678 (733)
T ss_pred cCCCcEEEEe
Confidence 9999999884
No 198
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=7.2e-15 Score=125.00 Aligned_cols=251 Identities=20% Similarity=0.206 Sum_probs=162.2
Q ss_pred CCCceEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEE-----------EeeecCCccceEEEEEECCCCCeEEEEEC-
Q 013436 123 TTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQ-----------KDILAKSLRWTVTDTSLSPDQRHLVYASM- 189 (443)
Q Consensus 123 h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~~~-----------~~~~~~~~~~~v~~i~~s~~~~~l~~~~~- 189 (443)
....|+|++|-|.+ +-|++|+..| |.||..+...... ......+| .+|+.+.|.+||..+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence 35679999999965 6788888754 9999876421111 11223344 57999999999999999885
Q ss_pred CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccC
Q 013436 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (443)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 269 (443)
|..|.|||..++....+.... -+++.-+.||||+.+|++++.|+..++|...............
T Consensus 217 sssi~iWdpdtg~~~pL~~~g----------------lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs 280 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKG----------------LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS 280 (445)
T ss_pred cceEEEEcCCCCCcccccccC----------------CCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC
Confidence 568999999999876655211 1268889999999999999999999999655443333333445
Q ss_pred CCeEEEEEeCCCCCE-EEEeeCCCeEEEEecccCCCCCc-----------eeeee------cC---CCCCeEEEEECCCC
Q 013436 270 SDVNTVCFGDESGHL-IYSGSDDNLCKVWDRRCLNVKGK-----------PAGVL------MG---HLEGITFIDSRGDG 328 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~-----------~~~~~------~~---~~~~v~~~~~~~~~ 328 (443)
+.|...+|+ ++|.. |++++..- ++|.+.-...... .+..+ .+ ..+++.+++|.|.|
T Consensus 281 grvqtacWs-pcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 281 GRVQTACWS-PCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred Cceeeeeec-CCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence 699999998 55654 44444433 3444331110000 01111 01 24678899999999
Q ss_pred CEEEEEeCCC--------CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEE
Q 013436 329 RYLISNGKDQ--------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (443)
Q Consensus 329 ~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (443)
.+||+.-+.+ .|.+||.+..-.. -..+-+.......--.
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~sp~v---------------------------------els~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKSPPV---------------------------------ELSYCGMIGGEYPAYI 404 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccccCce---------------------------------EEEecccccCCCCceE
Confidence 9999886643 3667777762110 0011111111112223
Q ss_pred EecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 401 ~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
.|+|.+ .++.+|..+-..|.+.-|++.
T Consensus 405 sF~pl~-n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 405 SFGPLK-NEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred Eeeecc-cCCcEEEEEeccCceEeeeeE
Confidence 466655 478888888889999888864
No 199
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.8e-15 Score=142.01 Aligned_cols=234 Identities=12% Similarity=0.118 Sum_probs=161.3
Q ss_pred CeEEEEECCCCeEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCC
Q 013436 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (443)
+.+.||++.......... .-...|++++|+|. ..+++.|..+|.|.+||+..+.......+.. ...
T Consensus 222 ~~~~vW~~~~p~~Pe~~~---~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~----------~~~ 288 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL---ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA----------LEV 288 (555)
T ss_pred ceEEEEecCCCCCceEEE---ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc----------ccc
Confidence 479999998762222222 23346999999995 5677788899999999998876532111111 122
Q ss_pred CceecEEEEEEeCCC--CEEEEEecCCeEEEEECCCCeeeE-E-----ee------ccCCCeEEEEEeCCCCCEEEEeeC
Q 013436 225 GYSFGIFSLKFSTDG--RELVAGSSDDCIYVYDLEANKLSL-R-----IL------AHTSDVNTVCFGDESGHLIYSGSD 290 (443)
Q Consensus 225 ~~~~~i~~l~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~-----~~------~~~~~v~~i~~~~~~~~~l~~~~~ 290 (443)
.|..++..+.|..+. .-|++++.||.|..|+++.-.... . .. .....++++.|.+.+.+.+++|+.
T Consensus 289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe 368 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE 368 (555)
T ss_pred cCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC
Confidence 477799999998744 449999999999999876543211 1 11 123468899999888999999999
Q ss_pred CCeEEEEecccCCCCC----ceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccc
Q 013436 291 DNLCKVWDRRCLNVKG----KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366 (443)
Q Consensus 291 d~~i~iwd~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (443)
+|.|.--+........ +....+..|.++|+++.++|=+..++..+.|-+++||.....
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~------------------ 430 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI------------------ 430 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC------------------
Confidence 9998874444222222 334566778999999999997766555555999999987721
Q ss_pred cccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
..++..+..+. ..+..+.|+|. .-..++++..||.|.|||+...
T Consensus 431 ---------------~~Pl~~~~~~~--~~v~~vaWSpt---rpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 431 ---------------ASPLLSLDSSP--DYVTDVAWSPT---RPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ---------------CCcchhhhhcc--ceeeeeEEcCc---CceEEEEEcCCCceehhhhhcc
Confidence 12233444443 22555667775 4568899999999999999743
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.4e-14 Score=116.75 Aligned_cols=199 Identities=12% Similarity=0.208 Sum_probs=144.8
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeE------EEEee----ecCCccceEEEEEECCCCCeEEEEE
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK------IQKDI----LAKSLRWTVTDTSLSPDQRHLVYAS 188 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~------~~~~~----~~~~~~~~v~~i~~s~~~~~l~~~~ 188 (443)
...+|.++|+.++|. ..+|++|+ ||.|+=|....... +-... .....--.|+++...|..+.+++++
T Consensus 57 ~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 57 PEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred eccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec
Confidence 448999999999999 44666664 59999887543211 00000 0001112488999999888888888
Q ss_pred CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeecc
Q 013436 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (443)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 268 (443)
.|+.++-||+++|+....++ ||+..|.++.--.....+++|++||++++||+++++.+..+...
T Consensus 134 GD~~~y~~dlE~G~i~r~~r----------------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYR----------------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred CCeEEEEEEecCCEEEEEEc----------------CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence 99999999999998866554 78889999998555566999999999999999999988876521
Q ss_pred ----------CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 013436 269 ----------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 338 (443)
Q Consensus 269 ----------~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 338 (443)
...|.+++. +..++++|+. ..+.+|.++ ..++...+. ....+..+.|. ...+++++..+
T Consensus 198 k~~~~lRp~~g~wigala~---~edWlvCGgG-p~lslwhLr----sse~t~vfp-ipa~v~~v~F~--~d~vl~~G~g~ 266 (325)
T KOG0649|consen 198 KNPNLLRPDWGKWIGALAV---NEDWLVCGGG-PKLSLWHLR----SSESTCVFP-IPARVHLVDFV--DDCVLIGGEGN 266 (325)
T ss_pred cChhhcCcccCceeEEEec---cCceEEecCC-CceeEEecc----CCCceEEEe-cccceeEeeee--cceEEEecccc
Confidence 123455544 4668877664 479999999 666665554 34567777785 44678888888
Q ss_pred CEEEEeCCC
Q 013436 339 AIKLWDIRK 347 (443)
Q Consensus 339 ~i~iwd~~~ 347 (443)
.|.-|.+..
T Consensus 267 ~v~~~~l~G 275 (325)
T KOG0649|consen 267 HVQSYTLNG 275 (325)
T ss_pred ceeeeeecc
Confidence 899998765
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=4.7e-18 Score=148.52 Aligned_cols=240 Identities=15% Similarity=0.173 Sum_probs=180.5
Q ss_pred CCCCCccchhhhcccCCccCCCccccc--ccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEE
Q 013436 75 KRHLPVSTVKMLAGREGNYSGRGRFSA--ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (443)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd 152 (443)
..++..-.++.+.+....|+.+|+..- ...+++..-.+.......-......|..+.|-.+.+++|++ ....++|||
T Consensus 119 a~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD 197 (545)
T KOG1272|consen 119 ATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYD 197 (545)
T ss_pred HHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEec
Confidence 333444444555666666777777643 33455544444444444444557789999999999999998 557899999
Q ss_pred CCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEE
Q 013436 153 VERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS 232 (443)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 232 (443)
-. |..+.. ...+. .|..+.|-|..-+|++++..|.++.-|+.+|+.+..+.... +.+..
T Consensus 198 ~~-GtElHC---lk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~----------------G~~~v 256 (545)
T KOG1272|consen 198 NN-GTELHC---LKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA----------------GRTDV 256 (545)
T ss_pred CC-CcEEee---hhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC----------------Cccch
Confidence 65 434443 32332 48999999999999999999999999999998876555332 26777
Q ss_pred EEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee
Q 013436 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (443)
Q Consensus 233 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 312 (443)
+.-+|-+..+-+|...|+|.+|.....+++..+..|.++|.+|++. ++|+++++.+.|..++|||+| ....+.++
T Consensus 257 m~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~-~~G~YMaTtG~Dr~~kIWDlR----~~~ql~t~ 331 (545)
T KOG1272|consen 257 MKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVD-RGGRYMATTGLDRKVKIWDLR----NFYQLHTY 331 (545)
T ss_pred hhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEEC-CCCcEEeecccccceeEeeec----ccccccee
Confidence 8889988899999999999999999999999999999999999996 999999999999999999999 44455444
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 313 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 313 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
.. ..+...+++|..| |++.+....|.||.
T Consensus 332 ~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 332 RT-PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred ec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence 43 3466778888655 44445556799994
No 202
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.5e-16 Score=132.74 Aligned_cols=219 Identities=14% Similarity=0.154 Sum_probs=156.7
Q ss_pred CCCccccCCCCceEEEEECCC--CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE----
Q 013436 115 NGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS---- 188 (443)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~--~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~---- 188 (443)
+....+.+|...+..+.|..+ ...+.+|+.||+|++||+.................+..+++.+..++.+++|.
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~ 140 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR 140 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence 345677888888999999873 57799999999999999988755544433333345678888877888888875
Q ss_pred CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCe---eeEE
Q 013436 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK---LSLR 264 (443)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~---~~~~ 264 (443)
.+-.|.+||++..+.. +....+ .|...|+++.|+| +.++|++|+.||.|.+||+.... .+..
T Consensus 141 s~A~v~lwDvR~~qq~-l~~~~e-------------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~ 206 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQL-LRQLNE-------------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH 206 (376)
T ss_pred CceEEEEEEeccccch-hhhhhh-------------hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence 3568999999876542 111111 3666999999999 66899999999999999997653 2223
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC----------------------------------------
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---------------------------------------- 304 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------------------------------------- 304 (443)
...|...|.++.|..+.-+.|.+-+......+|++.....
T Consensus 207 viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~ 286 (376)
T KOG1188|consen 207 VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGT 286 (376)
T ss_pred hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEecc
Confidence 3367778999999855545677888888888888762210
Q ss_pred -----------------CCceeeeecC-CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 305 -----------------KGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 305 -----------------~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
..+.+..+.+ |..-|.++.|.-.+.++.+|+.||.+.+|....
T Consensus 287 ~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 287 DSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred ccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 0111122222 444556666776778999999999999998643
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=9.5e-15 Score=133.76 Aligned_cols=239 Identities=13% Similarity=0.175 Sum_probs=144.9
Q ss_pred EEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CCCeEEEEECCC-CceeccccceecccCc
Q 013436 139 FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGS-GTMESLANVTEIHDGL 216 (443)
Q Consensus 139 l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~ 216 (443)
+++...++.|.+|++.+...+....... +......++++|++++|++++ .++.|.+|++.. +.........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------ 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------ 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec------
Confidence 3444678999999997432222222222 223467789999999887765 578899999973 3322111110
Q ss_pred eeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECCCCe----eeEEeeccCCCeEEEEEeCCCCCEEE-EeeC
Q 013436 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIY-SGSD 290 (443)
Q Consensus 217 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~-~~~~ 290 (443)
.......++|+|+++++++++. ++.|.+|++.+.. .+..+ .+...+..++++ +++++++ +...
T Consensus 78 ---------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~-p~g~~l~v~~~~ 146 (330)
T PRK11028 78 ---------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANID-PDNRTLWVPCLK 146 (330)
T ss_pred ---------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeC-CCCCEEEEeeCC
Confidence 0013457999999998888764 7899999997432 22222 233456778897 6666664 5556
Q ss_pred CCeEEEEecccCCCCCcee------eeecCCCCCeEEEEECCCCCEEEEEeC-CCCEEEEeCCCCCCccccCCcccccCc
Q 013436 291 DNLCKVWDRRCLNVKGKPA------GVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEW 363 (443)
Q Consensus 291 d~~i~iwd~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (443)
++.|.+||+... +... .... .......++|+|++++++++.. ++.|.+||+......
T Consensus 147 ~~~v~v~d~~~~---g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~------------ 210 (330)
T PRK11028 147 EDRIRLFTLSDD---GHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE------------ 210 (330)
T ss_pred CCEEEEEEECCC---CcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC------------
Confidence 799999999731 1111 1111 1234678999999999987766 899999999742100
Q ss_pred ccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC-CCeEEEEEccC
Q 013436 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS 429 (443)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~-dg~v~iwd~~~ 429 (443)
.+.+..+..........+......++|+|++|+++.. ++.|.+|++.+
T Consensus 211 ------------------~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 211 ------------------IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred ------------------EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 0112222111000000000011235679999999864 78999999864
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=1.2e-15 Score=127.72 Aligned_cols=225 Identities=15% Similarity=0.122 Sum_probs=163.1
Q ss_pred ceEEEEEECCCCCeEEEEECCCeEEEEECCCCce-eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC
Q 013436 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (443)
Q Consensus 170 ~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 248 (443)
.+|+|.+|++|...+|++.....|.||.....+. .....+ ..|...|+.+.|+|..+.|++++.|
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl--------------s~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL--------------SEHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh--------------hhhCcceeEEeecCCCCceeEccCC
Confidence 4799999999999999999999999999887763 222222 2366689999999999999999999
Q ss_pred CeEEEEECCC-C--eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEEC
Q 013436 249 DCIYVYDLEA-N--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (443)
Q Consensus 249 g~i~iwd~~~-~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 325 (443)
..-++|.... + ++...+..++...+++.|+ |.++.|++|+....|.||=....+.-.-..+.-..+...|++++|+
T Consensus 77 rnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 77 RNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred CCccccccCCCCeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence 9999999843 3 4556667889999999998 8899999999999999998752211111122334567889999999
Q ss_pred CCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCC
Q 013436 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (443)
Q Consensus 326 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (443)
|++-+|++|+.|+..+|+..--...... . .+..-.-..|.++.+.++.... .. ++...
T Consensus 156 pnnVLlaaGs~D~k~rVfSayIK~Vdek----p------------ap~pWgsk~PFG~lm~E~~~~g--gw----vh~v~ 213 (361)
T KOG1523|consen 156 PNNVLLAAGSTDGKCRVFSAYIKGVDEK----P------------APTPWGSKMPFGQLMSEASSSG--GW----VHGVL 213 (361)
T ss_pred CCcceecccccCcceeEEEEeeeccccC----C------------CCCCCccCCcHHHHHHhhccCC--Cc----eeeeE
Confidence 9999999999999999997543111000 0 0111111223344455553222 22 23344
Q ss_pred ccCCccEEEEeeCCCeEEEEEccChh
Q 013436 406 YSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 406 ~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
|||+|..|+-.+.|+.|.+=|.....
T Consensus 214 fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 214 FSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eCCCCCEeeEecCCCceEEeecCCCc
Confidence 67789999999999999999987654
No 205
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.70 E-value=2e-15 Score=127.52 Aligned_cols=273 Identities=18% Similarity=0.271 Sum_probs=179.4
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeE----EEEeeecC----------CccceEEEEEECCCC--CeEEEE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----IQKDILAK----------SLRWTVTDTSLSPDQ--RHLVYA 187 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~----~~~~~~~~----------~~~~~v~~i~~s~~~--~~l~~~ 187 (443)
.+-|.++.|...|.+||+|..+|.|.++.-..... .......+ .....|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45689999999999999999999999997543221 11111100 112368889999875 467778
Q ss_pred ECCCeEEEEECCCCceecc-cc--------------cee-cccCceeec----cCCCCceecEEEEEEeCCCCEEEEEec
Q 013436 188 SMSPIVHIVDVGSGTMESL-AN--------------VTE-IHDGLDFSA----ADDGGYSFGIFSLKFSTDGRELVAGSS 247 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~-~~--------------~~~-~~~~~~~~~----~~~~~~~~~i~~l~~~~~~~~l~~~~~ 247 (443)
+.|.+|++|.+.......- .. ++. .+..+.... .....|..-|.++.++.|...++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 8999999999875443220 00 000 000000000 0124688899999999999988887 4
Q ss_pred CCeEEEEECCCCeeeE---Eee-----ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceee---------
Q 013436 248 DDCIYVYDLEANKLSL---RIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG--------- 310 (443)
Q Consensus 248 dg~i~iwd~~~~~~~~---~~~-----~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------- 310 (443)
|-.|.+|+++-..... -++ .-+.-|++..|+|...+.++-.+..|+|++-|+|....-.....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 7789999986432211 122 22346889999988899999999999999999993221111111
Q ss_pred ---eecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEE
Q 013436 311 ---VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 387 (443)
Q Consensus 311 ---~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (443)
-+..--..|..+.|+++|+++++-.. -+|++||++.. .+++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme---------------------------------~~pv~t 309 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME---------------------------------AKPVET 309 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc---------------------------------CCcceE
Confidence 11122346888999999999998754 58999999652 234555
Q ss_pred Eeccceee---------eeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 388 YKGHSVLR---------TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 388 ~~~~~~~~---------~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
+.-|.... .++--.|-.+||-++.+++||+..+.++++++..|.
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 55554221 111112444566688999999999999999976554
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.6e-14 Score=134.57 Aligned_cols=205 Identities=17% Similarity=0.136 Sum_probs=138.2
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEEC---CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE-EC
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SM 189 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~ 189 (443)
......+..+...+...+|||||+.|+..+. +..|.+|++.+++... .....+ .+..++|+|||+.|+.. +.
T Consensus 188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~---~~~~~~~SPDG~~La~~~~~ 263 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPR---HNGAPAFSPDGSKLAFALSK 263 (429)
T ss_pred CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCC---CcCCeEECCCCCEEEEEEcC
Confidence 3344556667788999999999999887542 3579999998874322 222222 34568999999988865 44
Q ss_pred CC--eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-C--eEEEEECCCCeeeEE
Q 013436 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLR 264 (443)
Q Consensus 190 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~ 264 (443)
+| .|++||+.+++....... ...+....|+|||+.|+..+.+ + .|+++|+.+++. ..
T Consensus 264 ~g~~~I~~~d~~tg~~~~lt~~-----------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 264 TGSLNLYVMDLASGQIRQVTDG-----------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CCCcEEEEEECCCCCEEEccCC-----------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence 44 589999988765443221 1146678999999988877754 3 566668777653 34
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCC---CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCC--
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-- 339 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-- 339 (443)
+..+........|+ +++++|+..+.+ ..|.+||+. .+.. ..+... .......|+|||++|+.++.++.
T Consensus 326 lt~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~----~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~ 398 (429)
T PRK03629 326 ITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLA----TGGV-QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGS 398 (429)
T ss_pred eecCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECC----CCCe-EEeCCC-CCCCCceECCCCCEEEEEEcCCCce
Confidence 44444556678898 778877765543 358888986 4433 233321 22346789999999998887764
Q ss_pred -EEEEeCCC
Q 013436 340 -IKLWDIRK 347 (443)
Q Consensus 340 -i~iwd~~~ 347 (443)
+.++++..
T Consensus 399 ~l~~~~~~G 407 (429)
T PRK03629 399 VLNLVSTDG 407 (429)
T ss_pred EEEEEECCC
Confidence 66667643
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=6.4e-16 Score=137.72 Aligned_cols=186 Identities=19% Similarity=0.265 Sum_probs=135.0
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEeeec--CCccceEEEEEECCCC-CeEEEEECCCeEEEEECCCCceeccccce
Q 013436 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILA--KSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVT 210 (443)
Q Consensus 134 ~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 210 (443)
|++--|+.|-..|.|.+.|.... .+.+.... ...+..|+++.|-|.+ ..++++-.+|.+++||..-..........
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45666888888899998887652 21111111 1123569999999854 46667788999999986422111111111
Q ss_pred ecccCceeeccCCCC------------ceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEe
Q 013436 211 EIHDGLDFSAADDGG------------YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (443)
Q Consensus 211 ~~~~~~~~~~~~~~~------------~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (443)
....+-.|....... -...|..++|+|||++||+.+.||.++|+|..+.+++..++.--+...|++|+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 111111111111100 12378899999999999999999999999999998888888778889999998
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEEC
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 325 (443)
+|+++|++|+.|-.|.||.+. ..+.+..-++|...|+.++|.
T Consensus 342 -PDGKyIvtGGEDDLVtVwSf~----erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 342 -PDGKYIVTGGEDDLVTVWSFE----ERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred -CCccEEEecCCcceEEEEEec----cceEEEeccccccceeeEeec
Confidence 999999999999999999998 889999999999999999998
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.2e-15 Score=140.15 Aligned_cols=270 Identities=18% Similarity=0.207 Sum_probs=190.0
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC---CeEEEEECCCeEEEEECCCCceec
Q 013436 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ---RHLVYASMSPIVHIVDVGSGTMES 205 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~ 205 (443)
.-.||+|+++++.... ..|.||...++.++. .+.+|..+++.+.+.|.. .++++++.+|.|++||...+....
T Consensus 21 ~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred ccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 3469999998888754 689999999997776 678899999999998864 467799999999999998877654
Q ss_pred cccceecccCceee------------ccCC--------------------------------------------------
Q 013436 206 LANVTEIHDGLDFS------------AADD-------------------------------------------------- 223 (443)
Q Consensus 206 ~~~~~~~~~~~~~~------------~~~~-------------------------------------------------- 223 (443)
..........+.+. ....
T Consensus 97 t~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 97 TFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG 176 (792)
T ss_pred EEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE
Confidence 33221111000000 0000
Q ss_pred -------------------------CCceecEEEEEEeCCCCEEEEEecCCeEEEEECCC--C--eeeEEeeccCCCeEE
Q 013436 224 -------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--N--KLSLRILAHTSDVNT 274 (443)
Q Consensus 224 -------------------------~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~ 274 (443)
..|...+++.++||+++++++|..||.|.+|.--. + .....+.-|...|++
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 13566688999999999999999999999996322 1 233456689999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
++|+ .+|.+|++|+..|.+.+|.+. +++ ..-+..-.++|..+.++||+.+.+....|+.|.+-...++......
T Consensus 257 L~fS-~~G~~LlSGG~E~VLv~Wq~~----T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 257 LSFS-SDGAYLLSGGREGVLVLWQLE----TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI 330 (792)
T ss_pred eEEe-cCCceEeecccceEEEEEeec----CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence 9998 899999999999999999998 555 3445556789999999999999999999999999988775543332
Q ss_pred CCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
..-.+.. ... -..... -...+ .++|.-+.++-.+..|.|.+||+.+.+.+.
T Consensus 331 sgi~~~~--------------------~~~---k~~~~~--l~t~~----~idpr~~~~vln~~~g~vQ~ydl~td~~i~ 381 (792)
T KOG1963|consen 331 SGIKPPT--------------------PST---KTRPQS--LTTGV----SIDPRTNSLVLNGHPGHVQFYDLYTDSTIY 381 (792)
T ss_pred cCccCCC--------------------ccc---cccccc--cceeE----EEcCCCCceeecCCCceEEEEeccccceee
Confidence 2100000 000 000000 00111 233345667777888999999988877665
Q ss_pred HhH
Q 013436 435 CRQ 437 (443)
Q Consensus 435 ~~~ 437 (443)
.++
T Consensus 382 ~~~ 384 (792)
T KOG1963|consen 382 KLQ 384 (792)
T ss_pred eEE
Confidence 543
No 209
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=9.3e-16 Score=137.52 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=151.8
Q ss_pred ccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCe-------EEEEeeecCCccceEEEEEECCCCCeEE
Q 013436 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-------KIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (443)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 185 (443)
..++.+.+++|.++|.|++.++++..+++|+.||+|+.|++.... ...-.....+|...|..+++|+....|+
T Consensus 333 ~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll 412 (577)
T KOG0642|consen 333 DVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL 412 (577)
T ss_pred ceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee
Confidence 345678899999999999999999999999999999999664221 1112224568999999999999999999
Q ss_pred EEECCCeEEEEECCCCceeccccceecc---cCceeeccC---------------------------------CCCceec
Q 013436 186 YASMSPIVHIVDVGSGTMESLANVTEIH---DGLDFSAAD---------------------------------DGGYSFG 229 (443)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~---------------------------------~~~~~~~ 229 (443)
+++.||++++|+...... ..+.....+ ..+.+.... .......
T Consensus 413 scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~ 491 (577)
T KOG0642|consen 413 SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ 491 (577)
T ss_pred eecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence 999999999999876655 111111110 000000000 0011235
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCcee
Q 013436 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 309 (443)
Q Consensus 230 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 309 (443)
+.-+.++|.+...+++..|+.|+++|..+++++.....|...++++++. +++-+|++++.|+.+++|.+. ...++
T Consensus 492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~-~ng~~l~s~s~d~sv~l~kld----~k~~~ 566 (577)
T KOG0642|consen 492 INKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAID-PNGPYLMSGSHDGSVRLWKLD----VKTCV 566 (577)
T ss_pred cceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeec-CCCceEEeecCCceeehhhcc----chhee
Confidence 6778889999999999999999999999999999999999999999995 899999999999999999997 55666
Q ss_pred eeecCCC
Q 013436 310 GVLMGHL 316 (443)
Q Consensus 310 ~~~~~~~ 316 (443)
.....|.
T Consensus 567 ~es~~~r 573 (577)
T KOG0642|consen 567 LESTAHR 573 (577)
T ss_pred ecccccc
Confidence 5555543
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2e-15 Score=130.94 Aligned_cols=199 Identities=15% Similarity=0.139 Sum_probs=140.9
Q ss_pred EEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEE
Q 013436 173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (443)
Q Consensus 173 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 252 (443)
..++|+++|..|++++.||.+|+|+..+........ .|...|.++.|+|||+.|++.+.| ..+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~----------------~~~~eV~DL~FS~dgk~lasig~d-~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI----------------AHHAEVKDLDFSPDGKFLASIGAD-SAR 210 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH----------------hhcCccccceeCCCCcEEEEecCC-ceE
Confidence 678999999999999999999999976654432211 366689999999999999999999 799
Q ss_pred EEECCCCeeeEEeec--cCCCeEEEEEeCCCC---C--EEEEeeCCCeEEEEecccCCCC-CceeeeecCCCCCeEEEEE
Q 013436 253 VYDLEANKLSLRILA--HTSDVNTVCFGDESG---H--LIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDS 324 (443)
Q Consensus 253 iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~---~--~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~ 324 (443)
||+++++..+..... .......+.|+ .++ . +++.-..-+.|+.||+...... .-...........|++++.
T Consensus 211 VW~~~~g~~~a~~t~~~k~~~~~~cRF~-~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 211 VWSVNTGAALARKTPFSKDEMFSSCRFS-VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred EEEeccCchhhhcCCcccchhhhhceec-ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 999999977666542 23345566675 444 2 2333334456777776532111 0112222233468999999
Q ss_pred CCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEE-EeccceeeeeeEEEec
Q 013436 325 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT-YKGHSVLRTLIRCHFS 403 (443)
Q Consensus 325 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 403 (443)
+++|++++.|+.||.|-|++..+++. ++. -+.|.. .+ ..
T Consensus 290 S~dGkf~AlGT~dGsVai~~~~~lq~----------------------------------~~~vk~aH~~--~V----T~ 329 (398)
T KOG0771|consen 290 SDDGKFLALGTMDGSVAIYDAKSLQR----------------------------------LQYVKEAHLG--FV----TG 329 (398)
T ss_pred cCCCcEEEEeccCCcEEEEEeceeee----------------------------------eEeehhhhee--ee----ee
Confidence 99999999999999999999988432 222 233442 33 33
Q ss_pred CCccCCccEEEEeeCCCeEEEEEccC
Q 013436 404 PVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 404 ~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
..|+||.+++++.+.|....+..+.-
T Consensus 330 ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 330 LTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEcCCcCcccccccCCceeEEEEee
Confidence 34667999999999999998887753
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=5.6e-14 Score=132.36 Aligned_cols=216 Identities=16% Similarity=0.193 Sum_probs=142.1
Q ss_pred eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC---CCeEEEEECCCCceeccccceecccCceeeccCC
Q 013436 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (443)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (443)
.|.++|.+...... ...+...+...+|||||+.|+..+. +..|.+|++.+++...+.....
T Consensus 180 ~l~~~d~dg~~~~~----lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~------------ 243 (429)
T PRK03629 180 ELRVSDYDGYNQFV----VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR------------ 243 (429)
T ss_pred eEEEEcCCCCCCEE----eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC------------
Confidence 68999987653222 1224456899999999999987653 3479999998876544332211
Q ss_pred CCceecEEEEEEeCCCCEEEEE-ecCC--eEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeC-CCeEEEE--
Q 013436 224 GGYSFGIFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVW-- 297 (443)
Q Consensus 224 ~~~~~~i~~l~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~iw-- 297 (443)
.+..++|+|||+.|+.. +.+| .|++||+.+++.. .+..+...+....|+ ++++.|+..+. ++...+|
T Consensus 244 -----~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 244 -----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWF-PDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred -----CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEEC-CCCCEEEEEeCCCCCceEEEE
Confidence 23457999999988865 3344 5999999888654 444455567889998 77887766664 3444555
Q ss_pred ecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC---CCEEEEeCCCCCCccccCCcccccCcccccccCCCCC
Q 013436 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (443)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (443)
|+. .+. ...+..+........|+|||++|+..+.+ ..|.+||+.+..
T Consensus 317 d~~----~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~------------------------- 366 (429)
T PRK03629 317 NIN----GGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------------------------- 366 (429)
T ss_pred ECC----CCC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-------------------------
Confidence 553 332 23333344456678899999999876543 358888887632
Q ss_pred CcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCe---EEEEEccChhhh
Q 013436 375 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC---VYVYDLVSIQIL 433 (443)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~---v~iwd~~~g~~~ 433 (443)
...+.... ...+|.|||||++|+.++.++. ++++++. |...
T Consensus 367 ----------~~~Lt~~~-------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~ 410 (429)
T PRK03629 367 ----------VQVLTDTF-------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFK 410 (429)
T ss_pred ----------eEEeCCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCe
Confidence 12222110 1135778899999999988764 7777874 4433
No 212
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.1e-13 Score=131.12 Aligned_cols=217 Identities=18% Similarity=0.184 Sum_probs=143.6
Q ss_pred CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC---CCeEEEEECCCCceeccccceecccCceeeccC
Q 013436 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (443)
..|.++|.+... ... ...+...+...+|+|||+.|+..+. +..|.+||+.+++...+..
T Consensus 182 ~~l~~~d~dg~~-~~~---lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-------------- 243 (435)
T PRK05137 182 KRLAIMDQDGAN-VRY---LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-------------- 243 (435)
T ss_pred eEEEEECCCCCC-cEE---EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--------------
Confidence 378889986542 222 2245567999999999999998764 4589999998886543322
Q ss_pred CCCceecEEEEEEeCCCCEEE-EEecCC--eEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeC-CC--eEEE
Q 013436 223 DGGYSFGIFSLKFSTDGRELV-AGSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV 296 (443)
Q Consensus 223 ~~~~~~~i~~l~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~i 296 (443)
+...+...+|+|||+.|+ +.+.++ .|++||+.+++. ..+..+........|+ ++++.|+..+. +| .|.+
T Consensus 244 ---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 244 ---FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred ---CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc-CCCCEEEEEECCCCCCeEEE
Confidence 112466789999999776 444444 488889988764 4565666667789998 77887776653 33 6777
Q ss_pred EecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC---CCEEEEeCCCCCCccccCCcccccCcccccccCCCC
Q 013436 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (443)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (443)
+|+. .+. ...+..+...+....|+|+|+.|+..+.+ ..|.+||+....
T Consensus 319 ~d~~----g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~------------------------ 369 (435)
T PRK05137 319 MNAD----GSN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG------------------------ 369 (435)
T ss_pred EECC----CCC-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc------------------------
Confidence 7875 333 33343344556778899999999876653 357778875421
Q ss_pred CCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCC------CeEEEEEccChhh
Q 013436 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD------SCVYVYDLVSIQI 432 (443)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~d------g~v~iwd~~~g~~ 432 (443)
...+.... ...+|.|||||+.|+..+.+ ..|+++|+..++.
T Consensus 370 -----------~~~lt~~~-------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 370 -----------ERILTSGF-------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred -----------eEeccCCC-------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 11111100 12456788899988775543 3688889876543
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.6e-14 Score=129.89 Aligned_cols=252 Identities=17% Similarity=0.226 Sum_probs=172.6
Q ss_pred CCCCceEEEEECCCCCEE-EEEECCCeEEEEECCCCeEEEEeeecCCcc-ceEEEEEECCCCCeEEEEECCCeEEEEECC
Q 013436 122 QTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l-~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 199 (443)
.|....+.+..+|||+|+ |+|..--.|++||+..-..... .... ..|.-.-++-|-..++.-..|.+|.+...-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE----RhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE----RHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeee----ecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 567888999999999985 5666678899999987422211 1112 234444455566667776777777654322
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeC
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (443)
|... ...++. .-.+++++.-..-|++++....|+-++++.|..+..+....+.++++..+
T Consensus 125 -G~hy-~~RIP~-----------------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in- 184 (703)
T KOG2321|consen 125 -GRHY-RTRIPK-----------------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN- 184 (703)
T ss_pred -Ceee-eeecCc-----------------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec-
Confidence 2111 011111 23456666433345555566679999999999999998888999999998
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCCCCceeeee------cCCCC-----CeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL------MGHLE-----GITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~-----~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
+...+|++|+.+|.|..||.|+ ...+..+ ..|.+ .|+++.|+.+|-.+++|..+|.+.|||++..
T Consensus 185 ~~hgLla~Gt~~g~VEfwDpR~----ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 185 EEHGLLACGTEDGVVEFWDPRD----KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred CccceEEecccCceEEEecchh----hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 7777999999999999999994 3333332 22333 4999999999999999999999999999995
Q ss_pred CCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
+++ ..+.|.....+..+.|-+. .++..|++. ....++|||-.
T Consensus 261 ~pl-----------------------------------~~kdh~~e~pi~~l~~~~~--~~q~~v~S~-Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 261 KPL-----------------------------------LVKDHGYELPIKKLDWQDT--DQQNKVVSM-DKRILKIWDEC 302 (703)
T ss_pred Cce-----------------------------------eecccCCccceeeeccccc--CCCceEEec-chHHhhhcccc
Confidence 432 3344554455555566554 134445444 55689999999
Q ss_pred ChhhhhHhHHh
Q 013436 429 SIQILFCRQSL 439 (443)
Q Consensus 429 ~g~~~~~~~~~ 439 (443)
+|+....+++.
T Consensus 303 ~Gk~~asiEpt 313 (703)
T KOG2321|consen 303 TGKPMASIEPT 313 (703)
T ss_pred cCCceeecccc
Confidence 99988777654
No 214
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=1.5e-14 Score=118.02 Aligned_cols=226 Identities=16% Similarity=0.141 Sum_probs=157.2
Q ss_pred eecccccCCCcccc-CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEe------------------------
Q 013436 108 LSRYLPVNGPWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD------------------------ 162 (443)
Q Consensus 108 ~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~------------------------ 162 (443)
.|.+-..+....++ .|...|+.+.--|+ ..|.+-+.|..+.+|++..+..+...
T Consensus 39 ~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eql 117 (323)
T KOG0322|consen 39 MWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQL 117 (323)
T ss_pred EEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhh
Confidence 44444444555566 57788999999988 45777789999999998763111000
Q ss_pred eec--------------------------CCccceEEEEEECC-CCC--eEEEEECCCeEEEEECCCCceeccccceecc
Q 013436 163 ILA--------------------------KSLRWTVTDTSLSP-DQR--HLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (443)
Q Consensus 163 ~~~--------------------------~~~~~~v~~i~~s~-~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 213 (443)
... ....+.+.+..+.. +++ +|++|-.+|.|.+||+.++.....+.....
T Consensus 118 l~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~k- 196 (323)
T KOG0322|consen 118 LEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSK- 196 (323)
T ss_pred eecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccc-
Confidence 000 01112344444322 222 456777899999999998743221111000
Q ss_pred cCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC--ee--eEEeeccCCCeEEEEEeCCCCCEEEEee
Q 013436 214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KL--SLRILAHTSDVNTVCFGDESGHLIYSGS 289 (443)
Q Consensus 214 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~--~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 289 (443)
.......|..+|.++.+.+.-..=++|+.+..+..|+++.. .+ ...+.-....|..+.+- ++++++|+++
T Consensus 197 -----v~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIR-pD~KIlATAG 270 (323)
T KOG0322|consen 197 -----VESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIR-PDGKILATAG 270 (323)
T ss_pred -----cccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEc-cCCcEEeecc
Confidence 01112347779999999875555577777888889987643 21 12233344567888885 9999999999
Q ss_pred CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 290 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
.|+.|+||..+ +..++..+.-|...|++++|+|+...+|+++.|++|.+|++
T Consensus 271 WD~RiRVyswr----tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 271 WDHRIRVYSWR----TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCcEEEEEec----cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999 88999999999999999999999999999999999999986
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=2.5e-13 Score=113.89 Aligned_cols=240 Identities=15% Similarity=0.196 Sum_probs=156.7
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE-EECC------CeEEEEECC
Q 013436 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMS------PIVHIVDVG 199 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~~d------g~i~iwd~~ 199 (443)
...++|+.|...+++|..+| .+||+.+.-+.........+ .-.+..+-| -.++|+. |+.+ ..|.|||=.
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~-G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDG-GFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccC-chhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 44599999999999997766 89999875321111111111 011222222 2345553 4333 379999944
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC-CCeeeEEeecc--CCCeEEEE
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAH--TSDVNTVC 276 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~--~~~v~~i~ 276 (443)
...++..... ..+|.++.+.++ .|++.- .+.|+||... ..+.+..+... ...+.+++
T Consensus 84 k~~~i~el~f-----------------~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 84 KERCIIELSF-----------------NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred cCcEEEEEEe-----------------ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 4433332222 227999999754 466654 5679999987 44555555432 23344444
Q ss_pred EeCCCCCEEEE-eeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCC-EEEEeCCCCCCcccc
Q 013436 277 FGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNASC 354 (443)
Q Consensus 277 ~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~ 354 (443)
-. .+..+||. |-.-|.|.|-|+..... .....+.+|...|.+++.+.+|..+||+|..|+ |||||..+
T Consensus 144 ~~-~~k~~LafPg~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~------- 213 (346)
T KOG2111|consen 144 PT-SNKSLLAFPGFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED------- 213 (346)
T ss_pred CC-CCceEEEcCCCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-------
Confidence 32 33445554 44668999999973321 134678899999999999999999999999997 79999999
Q ss_pred CCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
+..+.+++.-... .-.++.+|||++.+||++|.-|+|+|+.+....
T Consensus 214 ---------------------------g~~l~E~RRG~d~----A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 214 ---------------------------GTLLQELRRGVDR----ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ---------------------------CcEeeeeecCCch----heEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 4556665543322 224556788899999999999999999987643
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.1e-13 Score=131.01 Aligned_cols=206 Identities=17% Similarity=0.119 Sum_probs=139.3
Q ss_pred ccCCCccccCCCCceEEEEECCCCCEEEEEECC---CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE-EE
Q 013436 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-AS 188 (443)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~ 188 (443)
....+..+..+...+...+|+|||+.|+..+.+ ..|.+||+.++..... . ...+...+.+|+|||+.|+. .+
T Consensus 192 ~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~---~~~g~~~~~~~SpDG~~l~~~~s 267 (433)
T PRK04922 192 DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-A---SFRGINGAPSFSPDGRRLALTLS 267 (433)
T ss_pred CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-c---cCCCCccCceECCCCCEEEEEEe
Confidence 345566777888899999999999999987643 4699999988754321 1 22233557899999998764 45
Q ss_pred CCC--eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CC--eEEEEECCCCeeeE
Q 013436 189 MSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKLSL 263 (443)
Q Consensus 189 ~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~ 263 (443)
.+| .|++||+.+++...+.. +.......+|+|||+.|+.++. +| .|+++|+.+++. .
T Consensus 268 ~~g~~~Iy~~d~~~g~~~~lt~-----------------~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~ 329 (433)
T PRK04922 268 RDGNPEIYVMDLGSRQLTRLTN-----------------HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-E 329 (433)
T ss_pred CCCCceEEEEECCCCCeEECcc-----------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-E
Confidence 555 69999998886543322 1113456799999998887764 34 477888877663 3
Q ss_pred EeeccCCCeEEEEEeCCCCCEEEEeeCCC---eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC---
Q 013436 264 RILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD--- 337 (443)
Q Consensus 264 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--- 337 (443)
.+..+......++|+ ++++.|+..+.++ .|.+||+. .+... .+. +........|+|||++|+..+.+
T Consensus 330 ~lt~~g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~----~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~ 402 (433)
T PRK04922 330 RLTFQGNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLS----TGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGR 402 (433)
T ss_pred EeecCCCCccCEEEC-CCCCEEEEEECCCCceeEEEEECC----CCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCc
Confidence 333333445578998 7888887765433 69999986 44433 333 22244567899999988766653
Q ss_pred CCEEEEeCCC
Q 013436 338 QAIKLWDIRK 347 (443)
Q Consensus 338 g~i~iwd~~~ 347 (443)
+.|.++++..
T Consensus 403 ~~L~~~~~~g 412 (433)
T PRK04922 403 GVLAAVSTDG 412 (433)
T ss_pred eEEEEEECCC
Confidence 3477777754
No 217
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.64 E-value=2.1e-14 Score=120.66 Aligned_cols=198 Identities=20% Similarity=0.191 Sum_probs=135.4
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE-EECCCeEEEEECCCCceeccc
Q 013436 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLA 207 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~ 207 (443)
-++|||+|+++|+.+.- .+.|-|..+-+..+..... ..|.-+.|..|..+++. ...++.|.+|++...+.....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 46899999999999765 7888888775332222221 24778999998877665 567889999999887765433
Q ss_pred cceecccCceeeccCCCCceecEEEEEEeCCCCE-EEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEE
Q 013436 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 286 (443)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 286 (443)
.. ...++..+.|||||+. |.+...+-.|.+|.+.+.+... +.-.+..+..++|+ +++++.+
T Consensus 88 de----------------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~-~dg~f~a 149 (447)
T KOG4497|consen 88 DE----------------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFH-PDGQFCA 149 (447)
T ss_pred cc----------------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEEC-CCCceee
Confidence 21 2237899999999964 5566678899999998877543 22334456888897 8888777
Q ss_pred EeeC-C-----------------------------------CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCE
Q 013436 287 SGSD-D-----------------------------------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (443)
Q Consensus 287 ~~~~-d-----------------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 330 (443)
.++. | +.+.+||-- -.-.+.. ....-++..++|+|.+++
T Consensus 150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~----Leykv~a-Ye~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV----LEYKVYA-YERGLGLKFVEWSPCNQF 224 (447)
T ss_pred eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch----hhheeee-eeeccceeEEEeccccce
Confidence 6653 1 123333321 0011111 112357889999999999
Q ss_pred EEEEeCCCCEEEEeCCCCCCcccc
Q 013436 331 LISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
|+.|+.|+.++|-+--+.+....+
T Consensus 225 lavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred EEeeccchhhhhhceeeeeehhhh
Confidence 999999999999877666554433
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.2e-13 Score=129.18 Aligned_cols=206 Identities=17% Similarity=0.129 Sum_probs=141.5
Q ss_pred ccCCCccccCCCCceEEEEECCCCCEEEEEEC---CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE-EE
Q 013436 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-AS 188 (443)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~ 188 (443)
....+..+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.... ...+.+.+...+|+|||+.|+. .+
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~la~~~~ 265 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL----VGNFPGMTFAPRFSPDGRKVVMSLS 265 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE----eecCCCcccCcEECCCCCEEEEEEe
Confidence 44556677888899999999999999888764 4679999999885432 2233445778899999998764 45
Q ss_pred CCC--eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC---CeEEEEECCCCeeeE
Q 013436 189 MSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSL 263 (443)
Q Consensus 189 ~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~ 263 (443)
.++ .|++||+.++....+.. +........|+|||+.|+..+.. ..|+++|+..++. .
T Consensus 266 ~~g~~~Iy~~d~~~~~~~~Lt~-----------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~ 327 (435)
T PRK05137 266 QGGNTDIYTMDLRSGTTTRLTD-----------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-R 327 (435)
T ss_pred cCCCceEEEEECCCCceEEccC-----------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-E
Confidence 555 47788988876544322 11135568999999988877643 3688999877654 4
Q ss_pred EeeccCCCeEEEEEeCCCCCEEEEeeCC---CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC---
Q 013436 264 RILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD--- 337 (443)
Q Consensus 264 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--- 337 (443)
.+..+...+....|+ ++++.|+....+ ..|.+||+. .+ ....+. ....+..+.|+|||+.|+..+.+
T Consensus 328 ~lt~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~----~~-~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~ 400 (435)
T PRK05137 328 RISFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPD----GS-GERILT-SGFLVEGPTWAPNGRVIMFFRQTPGS 400 (435)
T ss_pred EeecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECC----CC-ceEecc-CCCCCCCCeECCCCCEEEEEEccCCC
Confidence 444445567778898 778887776543 367888874 22 223332 22346778999999988765542
Q ss_pred ---CCEEEEeCCC
Q 013436 338 ---QAIKLWDIRK 347 (443)
Q Consensus 338 ---g~i~iwd~~~ 347 (443)
..+.++|+..
T Consensus 401 ~~~~~L~~~dl~g 413 (435)
T PRK05137 401 GGAPKLYTVDLTG 413 (435)
T ss_pred CCcceEEEEECCC
Confidence 2477777765
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.63 E-value=3.3e-16 Score=146.31 Aligned_cols=243 Identities=17% Similarity=0.204 Sum_probs=167.0
Q ss_pred ecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEE
Q 013436 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (443)
Q Consensus 164 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 243 (443)
.+.+|...|+|+.|...|.++++|+.|..|+||.++++.+..... ||.+.|+.++.+.+..+++
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r----------------Ghs~ditdlavs~~n~~ia 248 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR----------------GHSGDITDLAVSSNNTMIA 248 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC----------------CCccccchhccchhhhhhh
Confidence 355888999999999999999999999999999998887654433 6888999999999999999
Q ss_pred EEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC--CCceeeeecCCCCCeEE
Q 013436 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--KGKPAGVLMGHLEGITF 321 (443)
Q Consensus 244 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~ 321 (443)
+++.|..|++|-+..+.++..+.+|++.|++++|+|- .+.+.||++++||.+-... ...+. .+ ....-+.+
T Consensus 249 aaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~-~~-~~~~~~~s 321 (1113)
T KOG0644|consen 249 AASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPL-KF-TEKDLVDS 321 (1113)
T ss_pred hcccCceEEEEecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCC-Cc-ccccceee
Confidence 9999999999999999999999999999999999843 2788999999999871100 00111 11 12245566
Q ss_pred EEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCC----CCcccCCCCeeEEEEeccceeeee
Q 013436 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ----ARDLKHPCDQSVATYKGHSVLRTL 397 (443)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 397 (443)
+.|-.++.-++|++.|+.-..|.+........... ......+......... ...+....++.+..+.+|.....+
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~li-f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yv 400 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLI-FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYV 400 (1113)
T ss_pred eeccccccccccccCCcccccchhhHhhhhccceE-EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceee
Confidence 66777777788888888877776654211100000 0000000000000000 001111224445566677766666
Q ss_pred eEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhH
Q 013436 398 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFC 435 (443)
Q Consensus 398 ~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~ 435 (443)
+. ++|. +.....+++.||...|||+-.|..++.
T Consensus 401 Ld--~Hpf---n~ri~msag~dgst~iwdi~eg~pik~ 433 (1113)
T KOG0644|consen 401 LD--VHPF---NPRIAMSAGYDGSTIIWDIWEGIPIKH 433 (1113)
T ss_pred ee--ecCC---CcHhhhhccCCCceEeeecccCCccee
Confidence 54 4553 557788999999999999998876543
No 220
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=8.9e-15 Score=130.49 Aligned_cols=187 Identities=12% Similarity=0.115 Sum_probs=139.6
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
...++.|.++|.|-.|+|||.-|++++.||.|++|.-... +.. .......+|.|++|.|+.+.++.+.. +.+.|=
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRS--tl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IK 171 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRS--TVVQNEESIRCARWAPNSNSIVFCQG-GHISIK 171 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHH--HHhhcCceeEEEEECCCCCceEEecC-CeEEEe
Confidence 3457899999999999999999999999999999986542 111 23344457999999999887776544 345554
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 276 (443)
.+......... . .|.+-|.++.|++....+++|++|-..+|||- .|..+..-..|..+|++++
T Consensus 172 pL~~n~k~i~W---k-------------AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 172 PLAANSKIIRW---R-------------AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVA 234 (737)
T ss_pred ecccccceeEE---e-------------ccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeee
Confidence 44433221111 1 36668999999999999999999999999996 4555666678999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEE
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 343 (443)
|+ |+ ..++.++.+ ++++= ....+.|..++|++||..+++|+..|.+.+=
T Consensus 235 ~n-pd-~~~~v~S~n-t~R~~---------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 235 FN-PE-KDYLLWSYN-TARFS---------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ec-cc-cceeeeeee-eeeec---------------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 98 55 566666653 33311 1235688999999999999999988876553
No 221
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=9.5e-14 Score=119.38 Aligned_cols=266 Identities=11% Similarity=0.142 Sum_probs=177.4
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
..|.+.|+|++|...++++++|..+++|.+-|+++.+.+... ......+.|+.+..+|..+.|++.+.++.|.+||.+.
T Consensus 102 ~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 102 HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred CccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 346689999999999999999999999999999998666532 2334456899999999999999999999999999986
Q ss_pred Cc-eeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeee-EE------eeccCCC
Q 013436 201 GT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLS-LR------ILAHTSD 271 (443)
Q Consensus 201 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~-~~------~~~~~~~ 271 (443)
.. ......... .......+.|+| ...+|++.+..+-+-+||.+..... .. +......
T Consensus 181 ~~~~~~~~~~AN--------------~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~ 246 (609)
T KOG4227|consen 181 RQNPISLVLPAN--------------SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTE 246 (609)
T ss_pred CCCCCceeeecC--------------CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchh
Confidence 54 211111111 122577889999 4567888888888999998765421 11 1111222
Q ss_pred eEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCc-eeeeecCCC-------CCeEEEEECCCCCEEEEEeCCCCEEEE
Q 013436 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHL-------EGITFIDSRGDGRYLISNGKDQAIKLW 343 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~dg~i~iw 343 (443)
-..+.|+ ++|+.|.+--....-.+||+. ... ++..+. |. ..+.+++|..|.. +++|+.+-.|++|
T Consensus 247 ~M~~~~~-~~G~Q~msiRR~~~P~~~D~~----S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~W 319 (609)
T KOG4227|consen 247 WMGSLWS-PSGNQFMSIRRGKCPLYFDFI----SQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIW 319 (609)
T ss_pred hhheeeC-CCCCeehhhhccCCCEEeeee----cccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEE
Confidence 3567897 777777766665566778876 322 222222 22 2456777875544 8899999999999
Q ss_pred eCCCCCCccccCCcccccCcccccccCCCCCCcc--cCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCe
Q 013436 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL--KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (443)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~ 421 (443)
.+.......-+. . +..+...+ ..--...+..++||......+ .|+|...+|++.+-.+.
T Consensus 320 klP~~~ds~G~~-----------~--IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV------RF~~H~~~l~SSGVE~~ 380 (609)
T KOG4227|consen 320 KLPRANDSYGFT-----------Q--IGHDEEEMPSEIFIEKELTVLRGHRSVPNQV------RFSQHNNLLVSSGVENS 380 (609)
T ss_pred ecCCCccccCcc-----------c--cCcchhhCchhheecceeEEEecccccccce------eecCCcceEeccchhhh
Confidence 987522111100 0 00000000 001135577889998544433 36667889999999999
Q ss_pred EEEEEc
Q 013436 422 VYVYDL 427 (443)
Q Consensus 422 v~iwd~ 427 (443)
++||.-
T Consensus 381 ~KlWS~ 386 (609)
T KOG4227|consen 381 FKLWSD 386 (609)
T ss_pred eecccc
Confidence 999964
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=5e-14 Score=121.17 Aligned_cols=211 Identities=16% Similarity=0.195 Sum_probs=157.8
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCe----EEEEeeecCCccceEEEEEECCCCCeE-EEEECC--CeEEEE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW----KIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMS--PIVHIV 196 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~~d--g~i~iw 196 (443)
..+|..++.. ...|++|-.+|.+.+|....+. .+...... ..+..+.-++....+ ++|+.. ..+.||
T Consensus 105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g----~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG----PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC----CceeeeccCCCCCceEecCchhcccceeee
Confidence 4445555444 3367788889999999988542 12221122 247777777765555 558888 789999
Q ss_pred ECCCCceeccccceecc-cCceeeccCCCCceecEEEEEEeCC--CCEEEEEecCCeEEEEECCCC-eeeEEeeccCCCe
Q 013436 197 DVGSGTMESLANVTEIH-DGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDV 272 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v 272 (443)
|+++.+. ++...... +.+.+.. .-.++++.|-+. ...|++++.-+.|++||.+.+ +++..+.-...++
T Consensus 179 dle~~~q--iw~aKNvpnD~L~LrV------PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~i 250 (412)
T KOG3881|consen 179 DLEQSKQ--IWSAKNVPNDRLGLRV------PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPI 250 (412)
T ss_pred eccccee--eeeccCCCCcccccee------eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcc
Confidence 9998743 22222211 1111111 115678899987 789999999999999999876 5777887778899
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeee-ecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
+++... ++++++++|..-+.+..||++ .+..... +.+..+.|.+|..+|.+++|++++-|..|||+|+.+...+
T Consensus 251 s~~~l~-p~gn~Iy~gn~~g~l~~FD~r----~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 251 SSTGLT-PSGNFIYTGNTKGQLAKFDLR----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred eeeeec-CCCcEEEEecccchhheeccc----CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 999996 899999999999999999999 7776666 8889999999999999999999999999999999996554
Q ss_pred cc
Q 013436 352 AS 353 (443)
Q Consensus 352 ~~ 353 (443)
..
T Consensus 326 ~k 327 (412)
T KOG3881|consen 326 HK 327 (412)
T ss_pred hh
Confidence 43
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=1.2e-12 Score=119.84 Aligned_cols=265 Identities=15% Similarity=0.160 Sum_probs=157.3
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CCCeEEEEE
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVD 197 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd 197 (443)
.+......-..+.|+|||+++++++.||.|.++|+.+++.+.+..... ....+++|+||++++++. ..+.+.++|
T Consensus 31 ~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 31 RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEEEcCCCCEEEEEecCCCceeEec
Confidence 334333333457899999999999999999999999998777654433 377899999999998776 578999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECCCCeeeE-EeeccCCCeEEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSL-RILAHTSDVNTV 275 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~-~~~~~~~~v~~i 275 (443)
.++.+............. +....+..+..+|....+++.-. .+.|.+.|....+.+. ............
T Consensus 107 ~~tle~v~~I~~~~~~~~---------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVD---------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp TTT--EEEEEE--EE-TT---------TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred cccccceeeccccccccc---------ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 999887665443322111 12336778888888885655544 5889999987764332 222344566788
Q ss_pred EEeCCCCCEEEEe-eCCCeEEEEecccCCC--------------------------------------------------
Q 013436 276 CFGDESGHLIYSG-SDDNLCKVWDRRCLNV-------------------------------------------------- 304 (443)
Q Consensus 276 ~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~-------------------------------------------------- 304 (443)
.|. +++++++.+ ..+..|-++|......
T Consensus 178 ~~d-pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~ 256 (369)
T PF02239_consen 178 GFD-PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDD 256 (369)
T ss_dssp EE--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STT
T ss_pred ccC-cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchh
Confidence 886 777776554 4555777777652100
Q ss_pred -CCceeeeecCCCCCeEEEEECCCCCEEEEE----eCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccC
Q 013436 305 -KGKPAGVLMGHLEGITFIDSRGDGRYLISN----GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (443)
Q Consensus 305 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (443)
..+.+..+.....+ ..+..+|+++++.+. ...+.|.++|.++.
T Consensus 257 ~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl------------------------------- 304 (369)
T PF02239_consen 257 YAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL------------------------------- 304 (369)
T ss_dssp TBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT-------------------------------
T ss_pred hcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc-------------------------------
Confidence 01122222222223 556778999998887 34578999999883
Q ss_pred CCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCC--CeEEEEEccChhhhhHhH
Q 013436 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--SCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~d--g~v~iwd~~~g~~~~~~~ 437 (443)
+.+..+..... .. ..++.|++||+++.....+ |.|.+||..|.+++..+.
T Consensus 305 ---~~~~~i~~~~~-~~----~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 305 ---KVVKTITPGPG-KR----VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp ---EEEE-HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ---ceeEEEeccCC-Cc----EeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 22333321111 11 3445677899987766543 479999999999887654
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.7e-13 Score=117.95 Aligned_cols=254 Identities=14% Similarity=0.151 Sum_probs=172.7
Q ss_pred CCceEEEEECCCCC--EEEEEECCCeEEEEECCCCeEEEEe---eecCCccceEEEEEECCCCCeEEEEECCCeEEEEEC
Q 013436 124 TSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKIQKD---ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 124 ~~~v~~~~~s~~~~--~l~~g~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 198 (443)
...|..++|..+++ .|...+.+..+..+........... ........+|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 45677888887663 4444446666777776655332221 1222334456555543 346888899999999999
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecC--CeEEEEECCCCeeeEEeecc-------
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSD--DCIYVYDLEANKLSLRILAH------- 268 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d--g~i~iwd~~~~~~~~~~~~~------- 268 (443)
+.+.........- . ...++..+.-++... .+++|+.. ..+.|||+++.+.+..-+.-
T Consensus 133 k~~d~hss~l~~l-a------------~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 133 KSGDLHSSKLIKL-A------------TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred cCCccccccceee-e------------cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence 8654321110000 0 001566666666444 55668888 78999999988655443321
Q ss_pred --CCCeEEEEEeCCC-CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 269 --TSDVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 269 --~~~v~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
.-.++++.|.+.+ ...|++++.-+.+++||.+ ...+++..+.-...+|+++...|++++++++..-+.+..+|+
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~---~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~ 276 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR---HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDL 276 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCc---ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecc
Confidence 1245778887331 6789999999999999998 356788888888899999999999999999999999999999
Q ss_pred CCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEE-EeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEE
Q 013436 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT-YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~i 424 (443)
+.+.. +.. +++-...+..+ +.+| .+++|+++|-|..|||
T Consensus 277 r~~kl----------------------------------~g~~~kg~tGsirsi--h~hp----~~~~las~GLDRyvRI 316 (412)
T KOG3881|consen 277 RGGKL----------------------------------LGCGLKGITGSIRSI--HCHP----THPVLASCGLDRYVRI 316 (412)
T ss_pred cCcee----------------------------------eccccCCccCCcceE--EEcC----CCceEEeeccceeEEE
Confidence 99542 222 44444333322 2333 6789999999999999
Q ss_pred EEccChhhhhH
Q 013436 425 YDLVSIQILFC 435 (443)
Q Consensus 425 wd~~~g~~~~~ 435 (443)
+|+.+.+++..
T Consensus 317 hD~ktrkll~k 327 (412)
T KOG3881|consen 317 HDIKTRKLLHK 327 (412)
T ss_pred eecccchhhhh
Confidence 99999777654
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.4e-13 Score=117.31 Aligned_cols=210 Identities=14% Similarity=0.161 Sum_probs=145.6
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC-CeEEEEECCCeEEEEECCCCc
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~ 202 (443)
+..+..++|++.-..+|++..|-.|++|+-... .... .....+..|++++|-|.+ +.|++|+..| |.+|......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~--Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTK--LKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCce--ecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc
Confidence 456888999998788999999999999997762 2222 223344569999999974 5777777766 8899875432
Q ss_pred eecc-ccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECCCCeeeEEeeccCCCeEEEEEeCC
Q 013436 203 MESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (443)
Q Consensus 203 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (443)
.... ..... ..........|| .+|++++|++||..+++++. +..|.|||..++..+.......+.+.-+.|+ |
T Consensus 174 n~~r~~~~~s---~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-P 248 (445)
T KOG2139|consen 174 NANRNIRMMS---THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-P 248 (445)
T ss_pred cccccccccc---ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-C
Confidence 1111 00000 011111122344 58999999999999999876 4679999999987655444556778899998 8
Q ss_pred CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 281 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
++.+|++++-|+..++|.... ......-.. ..+.|....|+|+|++|+-... |.-++|.+.-
T Consensus 249 dgd~lfaAt~davfrlw~e~q---~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f 310 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQ---SWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTF 310 (445)
T ss_pred CCCEEEEecccceeeeehhcc---cceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEee
Confidence 899999999999999996541 223332222 3458999999999998765543 3456665543
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=8.1e-13 Score=124.70 Aligned_cols=197 Identities=17% Similarity=0.114 Sum_probs=127.5
Q ss_pred ccCCCccccCCCCceEEEEECCCCCEEEEEECC---CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE-EE
Q 013436 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-AS 188 (443)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~ 188 (443)
....+..+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++.... .. ...+.+...+|+|||+.|+. .+
T Consensus 184 dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~---~~~g~~~~~~~SPDG~~la~~~~ 259 (427)
T PRK02889 184 DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VA---NFKGSNSAPAWSPDGRTLAVALS 259 (427)
T ss_pred CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-ee---cCCCCccceEECCCCCEEEEEEc
Confidence 344455666788899999999999999887643 359999999885432 11 12234668899999998875 56
Q ss_pred CCCeEEEEE--CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEE--ECCCCeeeE
Q 013436 189 MSPIVHIVD--VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVY--DLEANKLSL 263 (443)
Q Consensus 189 ~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iw--d~~~~~~~~ 263 (443)
.++...||. +.++....+.. +........|+|||+.|+..+. +|...+| ++.+++. .
T Consensus 260 ~~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~ 321 (427)
T PRK02889 260 RDGNSQIYTVNADGSGLRRLTQ-----------------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-Q 321 (427)
T ss_pred cCCCceEEEEECCCCCcEECCC-----------------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-E
Confidence 777655554 44444322211 1113456789999998887664 3444444 5555543 2
Q ss_pred EeeccCCCeEEEEEeCCCCCEEEEeeCCC---eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 013436 264 RILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 338 (443)
Q Consensus 264 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 338 (443)
.+...........|+ +++++|+..+.++ .|.+||+. .+... .+... .....+.|+|||+.|+.++.++
T Consensus 322 ~lt~~g~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~----~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 322 RVTFTGSYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLA----TGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EEecCCCCcCceEEC-CCCCEEEEEEccCCcEEEEEEECC----CCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence 332233334567897 7888888776554 69999987 44433 33322 2346789999999988776543
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.4e-13 Score=128.70 Aligned_cols=214 Identities=20% Similarity=0.176 Sum_probs=139.1
Q ss_pred CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC---CeEEEEECCCCceeccccceecccCceeeccC
Q 013436 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (443)
..|.+||..... ... ...+...+...+|+||++.|++++.+ ..|++||+.+++...+....
T Consensus 184 ~~l~i~D~~g~~-~~~---lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~------------ 247 (433)
T PRK04922 184 YALQVADSDGYN-PQT---ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR------------ 247 (433)
T ss_pred EEEEEECCCCCC-ceE---eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC------------
Confidence 368999986542 222 22345568899999999999988743 47999999887654332211
Q ss_pred CCCceecEEEEEEeCCCCEEEE-EecCC--eEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee-CCCe--EEE
Q 013436 223 DGGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNL--CKV 296 (443)
Q Consensus 223 ~~~~~~~i~~l~~~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~--i~i 296 (443)
.....++|+|||+.|+. .+.+| .|++||+.+++. ..+..+.......+|+ ++++.|+.++ .+|. |.+
T Consensus 248 -----g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 248 -----GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred -----CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEE
Confidence 12346899999997764 44454 599999988874 4455555556788998 7788777665 3454 555
Q ss_pred EecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC---CEEEEeCCCCCCccccCCcccccCcccccccCCCC
Q 013436 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (443)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (443)
+|+. .+.. ..+..+......++|+|+|++|+..+.++ .|.+||+.+...
T Consensus 321 ~dl~----~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----------------------- 372 (433)
T PRK04922 321 VAAS----GGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----------------------- 372 (433)
T ss_pred EECC----CCCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-----------------------
Confidence 6654 3332 22222333445789999999998765433 589999876321
Q ss_pred CCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCC---CeEEEEEccC
Q 013436 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVS 429 (443)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~d---g~v~iwd~~~ 429 (443)
..+.... ...+|.|+|||++|+..+.+ +.|+++++..
T Consensus 373 ------------~~Lt~~~-------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 373 ------------RTLTPGS-------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ------------EECCCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 1111110 01245688899988877653 4688888854
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=4.7e-12 Score=106.35 Aligned_cols=178 Identities=17% Similarity=0.234 Sum_probs=128.9
Q ss_pred CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCC-ceeccccceecccCceeeccCCC
Q 013436 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDG 224 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 224 (443)
+.|.|||=....++.+.. ...+|.++.+.++ .|++. ..+.|.+|...+. +..........+.
T Consensus 75 NkviIWDD~k~~~i~el~----f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPk---------- 137 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS----FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPK---------- 137 (346)
T ss_pred ceEEEEecccCcEEEEEE----eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCC----------
Confidence 469999955554444433 3346999999875 35554 4567999998743 3222222111111
Q ss_pred CceecEEEEEEeCCCCEEEE-EecCCeEEEEECCCCee--eEEeeccCCCeEEEEEeCCCCCEEEEeeCCCe-EEEEecc
Q 013436 225 GYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-CKVWDRR 300 (443)
Q Consensus 225 ~~~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~-i~iwd~~ 300 (443)
++.++.-+.+..+||. |-.-|.|.|-|+...+. ...+.+|.+.|.|++.+ .+|.++|+++..|+ |+|||..
T Consensus 138 ----GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 138 ----GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred ----ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcC
Confidence 3444433334444544 44569999999987665 57788999999999998 99999999999985 7999998
Q ss_pred cCCCCCceeeeecC--CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 301 CLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 301 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
+++.+.++.. ....|.+++|+|+..+|+++|..|++.|+.++...
T Consensus 213 ----~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 213 ----DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ----CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 8888888763 34579999999999999999999999999998754
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=2.2e-13 Score=113.22 Aligned_cols=150 Identities=19% Similarity=0.304 Sum_probs=106.9
Q ss_pred EEEEECCCCCeEEEEEC----------CCeEEEEECCCCce-eccccceecccCceeeccCCCCceecEEEEEEeCCCCE
Q 013436 173 TDTSLSPDQRHLVYASM----------SPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (443)
Q Consensus 173 ~~i~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 241 (443)
..+.|+|+|++|++-.. -+...+|.++.... .....+. ..++|.+++|+|+|+.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~---------------~~~~I~~~~WsP~g~~ 73 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK---------------KEGPIHDVAWSPNGNE 73 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc---------------CCCceEEEEECcCCCE
Confidence 35789999988775432 13455555532221 1111111 2226999999999998
Q ss_pred EEEE--ecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeC---CCeEEEEecccCCCCCceeeeecCCC
Q 013436 242 LVAG--SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHL 316 (443)
Q Consensus 242 l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~ 316 (443)
|++. ..++.|.+||++ ++.+..+ +...++.+.|+ |+|++|++++. .|.|.+||.+ ..+.+.... |
T Consensus 74 favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~ws-P~G~~l~~~g~~n~~G~l~~wd~~----~~~~i~~~~-~- 143 (194)
T PF08662_consen 74 FAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWS-PDGRFLVLAGFGNLNGDLEFWDVR----KKKKISTFE-H- 143 (194)
T ss_pred EEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEEC-CCCCEEEEEEccCCCcEEEEEECC----CCEEeeccc-c-
Confidence 7655 356789999996 5555555 35678899998 88999998874 4679999998 667776654 3
Q ss_pred CCeEEEEECCCCCEEEEEeC------CCCEEEEeCCC
Q 013436 317 EGITFIDSRGDGRYLISNGK------DQAIKLWDIRK 347 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~~~------dg~i~iwd~~~ 347 (443)
..++.++|+|+|++|+++.. |+.++||+...
T Consensus 144 ~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 144 SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 35789999999999998764 78899999864
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.9e-13 Score=127.74 Aligned_cols=176 Identities=23% Similarity=0.248 Sum_probs=113.9
Q ss_pred CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC---CeEEEEECCCCceeccccceecccCceeeccC
Q 013436 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (443)
..|.++|.+.. .... ...+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...+....
T Consensus 176 ~~L~~~D~dG~-~~~~---l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~------------ 239 (427)
T PRK02889 176 YQLQISDADGQ-NAQS---ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK------------ 239 (427)
T ss_pred cEEEEECCCCC-CceE---eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC------------
Confidence 35777777543 2222 22344568899999999999987743 36999999988654432211
Q ss_pred CCCceecEEEEEEeCCCCEEEE-EecCCe--EEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeC-CCeEEEEe
Q 013436 223 DGGYSFGIFSLKFSTDGRELVA-GSSDDC--IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVWD 298 (443)
Q Consensus 223 ~~~~~~~i~~l~~~~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~iwd 298 (443)
..+...+|+|||+.|+. .+.+|. |+++|+..+. ...+..+........|+ ++++.|+..+. ++...+|.
T Consensus 240 -----g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 240 -----GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred -----CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEE
Confidence 13557899999998874 566766 4455665554 45555555566778998 77877765553 56667776
Q ss_pred cccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC---CEEEEeCCC
Q 013436 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRK 347 (443)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~iwd~~~ 347 (443)
+... .+. ...+..........+|+|+|++|+..+.++ .|.+||+.+
T Consensus 313 ~~~~--~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 313 MPAS--GGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred EECC--CCc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 5421 222 222222223344678999999998776554 599999876
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=4.6e-13 Score=111.29 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=107.6
Q ss_pred EEEEECCCCCEEEEEEC----------CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE--ECCCeEEE
Q 013436 128 YVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHI 195 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~--~~dg~i~i 195 (443)
..+.|+|+|++|++-.. -+...||-++........... ...++|.+++|+|+++.||+. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46789999988776433 133555555332111121222 233469999999999987654 35679999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec---CCeEEEEECCCCeeeEEeeccCCCe
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDV 272 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v 272 (443)
||++..... .+. ...+..+.|+|+|++|++++. .|.|.+||+++.+.+.... | ..+
T Consensus 88 yd~~~~~i~---~~~----------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~ 146 (194)
T PF08662_consen 88 YDVKGKKIF---SFG----------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDA 146 (194)
T ss_pred EcCcccEeE---eec----------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcE
Confidence 999622221 111 126778999999999999874 4679999999888877663 3 347
Q ss_pred EEEEEeCCCCCEEEEeeC------CCeEEEEecccCCCCCceeee
Q 013436 273 NTVCFGDESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGV 311 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~ 311 (443)
+.++|+ |+|++|+++.. |+.++||+. .++.+..
T Consensus 147 t~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~-----~G~~l~~ 185 (194)
T PF08662_consen 147 TDVEWS-PDGRYLATATTSPRLRVDNGFKIWSF-----QGRLLYK 185 (194)
T ss_pred EEEEEc-CCCCEEEEEEeccceeccccEEEEEe-----cCeEeEe
Confidence 899998 89999988864 788999998 4555543
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.57 E-value=1.1e-12 Score=108.89 Aligned_cols=254 Identities=17% Similarity=0.172 Sum_probs=170.4
Q ss_pred CCceEEEEECC---CCC-EEEEEECCCeEEEEECCCCeEEEEeeecCCccc---eEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 124 TSRAYVSQFSA---DGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 124 ~~~v~~~~~s~---~~~-~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
.+.+..+.|.. +|. .++-+-.+|.|.++..................- ...++.|++.+..++++-.+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 45566777763 445 456666788999998765433332222222211 24577899999999999999999866
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCC-CeeeEE-eeccCCCeE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEA-NKLSLR-ILAHTSDVN 273 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~-~~~~~~~v~ 273 (443)
+............ +.|..+++...|+. +.+.+++|++|+.+..||++. ++.+.. .+.|...|.
T Consensus 149 ~~t~~~le~vq~w--------------k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~ 214 (339)
T KOG0280|consen 149 YETEMVLEKVQTW--------------KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVV 214 (339)
T ss_pred ecceeeeeecccc--------------cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceE
Confidence 6554443332221 24777999999986 557899999999999999993 344433 457899999
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC--CEEEEEeCCCCEEEEeCCCCCCc
Q 013436 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
+|.-+|+.+.+|++|+.|-.|++||.|.. ++++..-. -.++|..+.++|.- +.|+++-.+ -.+|-+.......
T Consensus 215 SI~ss~~~~~~I~TGsYDe~i~~~DtRnm---~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e 289 (339)
T KOG0280|consen 215 SIYSSPPKPTYIATGSYDECIRVLDTRNM---GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLE 289 (339)
T ss_pred EEecCCCCCceEEEeccccceeeeehhcc---cCccccCc-cccceEEEEecchhhhHHHHHHHhc-CceEEEecccccc
Confidence 99999999999999999999999999943 34443322 34899999999953 334444444 4788877763321
Q ss_pred cccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee-CCCeEE-EEEccC
Q 013436 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVY-VYDLVS 429 (443)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~-~dg~v~-iwd~~~ 429 (443)
+ ......++.|. .+++..+|.....+|||++ .|..++ +|-.-+
T Consensus 290 --~---------------------------~~~~~s~~~hd------Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 290 --F---------------------------QIVLPSDKIHD------SLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred --h---------------------------heeeecccccc------ceeeccccccccceeeeeeccccceeeeeeecc
Confidence 0 11344555565 4455556644456788876 577755 887666
Q ss_pred hh
Q 013436 430 IQ 431 (443)
Q Consensus 430 g~ 431 (443)
++
T Consensus 335 ~~ 336 (339)
T KOG0280|consen 335 GE 336 (339)
T ss_pred CC
Confidence 54
No 233
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.57 E-value=1.2e-12 Score=118.75 Aligned_cols=194 Identities=18% Similarity=0.187 Sum_probs=157.8
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEE------CC--------------CCCeEEEEECCCe
Q 013436 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL------SP--------------DQRHLVYASMSPI 192 (443)
Q Consensus 133 s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~------s~--------------~~~~l~~~~~dg~ 192 (443)
.|-..++|....||.++||+...++.-..+.......+..++..| +| +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 345678999999999999999998665555555555556666665 22 3446778888999
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCe
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 272 (443)
|.+|++..++....... ..|.++|.++.++.+-..|.+++.|+.+..|+....+....+......+
T Consensus 82 v~~ys~~~g~it~~~st--------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLST--------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred EEEEEecCCeEEEEEec--------------CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence 99999999887554432 2477799999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC-----CCEEEEEe-CCCCEEEEeCC
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-----GRYLISNG-KDQAIKLWDIR 346 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s~~-~dg~i~iwd~~ 346 (443)
.+++++ +++..+++++. .|++||+. +.+.+..|.||.++|.+++|.-+ |.+++++. .+.-|.+|-+.
T Consensus 148 ~sl~is-~D~~~l~~as~--~ik~~~~~----~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 148 SSLCIS-PDGKILLTASR--QIKVLDIE----TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ceEEEc-CCCCEEEeccc--eEEEEEcc----CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 999998 77888888764 79999999 99999999999999999999766 66666543 45668888776
Q ss_pred C
Q 013436 347 K 347 (443)
Q Consensus 347 ~ 347 (443)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=1.2e-11 Score=113.25 Aligned_cols=272 Identities=15% Similarity=0.111 Sum_probs=161.4
Q ss_pred CEE-EEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccC
Q 013436 137 SLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (443)
Q Consensus 137 ~~l-~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (443)
+++ ++-..++.|.|.|..+.+.+..+..... .-..+.|+||++++++++.||.|.++|+.+.+.........
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---- 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---- 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----
Confidence 444 4555689999999999877765443322 23457899999999999999999999999998765544322
Q ss_pred ceeeccCCCCceecEEEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEeecc-------CCCeEEEEEeCCCCCEEEE
Q 013436 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-------TSDVNTVCFGDESGHLIYS 287 (443)
Q Consensus 216 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~~ 287 (443)
....+++++||++++++. .++.+.++|.++.+.++.+... ...+..+..++....++++
T Consensus 79 -------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 79 -------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp -------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred -------------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 567899999999988775 5899999999999988887632 3466778776444445555
Q ss_pred eeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEE-eCCCCEEEEeCCCCCCccccCCcccccC----
Q 013436 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYE---- 362 (443)
Q Consensus 288 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~---- 362 (443)
.-+.+.|.+.|.... ..................|+|++++++++ ...+.|-++|..+.+.......+.....
T Consensus 146 lkd~~~I~vVdy~d~---~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~ 222 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDP---KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGA 222 (369)
T ss_dssp ETTTTEEEEEETTTS---SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEE
T ss_pred EccCCeEEEEEeccc---cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccc
Confidence 555588888887622 12222233344567788999999987665 4567899999988766554432211111
Q ss_pred ----------cccccc------cCCCCCCc-ccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEe----eCCCe
Q 013436 363 ----------WDYRWM------DYPPQARD-LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG----SHDSC 421 (443)
Q Consensus 363 ----------~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg----~~dg~ 421 (443)
|..... .+..+... ......+.++++...... +-+ .-+|+++++++. ...+.
T Consensus 223 ~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g---lFi----~thP~s~~vwvd~~~~~~~~~ 295 (369)
T PF02239_consen 223 NFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG---LFI----KTHPDSRYVWVDTFLNPDADT 295 (369)
T ss_dssp EEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS-----E----E--TT-SEEEEE-TT-SSHT-
T ss_pred cccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc---cee----ecCCCCccEEeeccCCCCCce
Confidence 111100 00111111 122234455555544322 111 236699999998 45689
Q ss_pred EEEEEccChhhhhHhHH
Q 013436 422 VYVYDLVSIQILFCRQS 438 (443)
Q Consensus 422 v~iwd~~~g~~~~~~~~ 438 (443)
|.++|..+.+.+.++..
T Consensus 296 v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 296 VQVIDKKTLKVVKTITP 312 (369)
T ss_dssp EEEEECCGTEEEE-HHH
T ss_pred EEEEECcCcceeEEEec
Confidence 99999999887776653
No 235
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=4.2e-13 Score=129.03 Aligned_cols=199 Identities=20% Similarity=0.233 Sum_probs=145.1
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC-CCCeEEEEECCCeEEEEECCCCceecc
Q 013436 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESL 206 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 206 (443)
.-++|.....+|++++.-..|+|||.....+.... ..+...-|+++.-+- .|+.+++|..||.|++||.+.......
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di--P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI--PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL 1246 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeec--ccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc
Confidence 55678776667777767789999999986554432 222334466665443 468999999999999999887655443
Q ss_pred ccceecccCceeeccCCCCceec--EEEEEEeCCCC-EEEEEecCCeEEEEECCCCeeeE--EeeccC---CCeEEEEEe
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFG--IFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSL--RILAHT---SDVNTVCFG 278 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~---~~v~~i~~~ 278 (443)
...... |... |..+.+.+.|- .|++|+.+|.|++||++...... .+..|- +..+++..+
T Consensus 1247 v~~~R~-------------h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1247 VCVYRE-------------HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH 1313 (1387)
T ss_pred ceeecc-------------cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeec
Confidence 333332 3333 88999998664 49999999999999999852222 222332 358999998
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC-------CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
....++|+|+. +.|+||++. ++.+..+.. ..+.+.+++|+|..-+||+|+.|.+|.||...+.
T Consensus 1314 -~hapiiAsGs~-q~ikIy~~~-----G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1314 -EHAPIIASGSA-QLIKIYSLS-----GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred -cCCCeeeecCc-ceEEEEecC-----hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 88889999998 999999984 444433322 2356799999999999999999999999987763
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=8.5e-12 Score=118.37 Aligned_cols=174 Identities=22% Similarity=0.244 Sum_probs=117.6
Q ss_pred CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC---CeEEEEECCCCceeccccceecccCceeeccC
Q 013436 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (443)
..|.++|..... ... ...+...+...+|+||+++|+.+... ..|++||+.+++.......
T Consensus 170 ~~l~~~d~~g~~-~~~---l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~------------- 232 (417)
T TIGR02800 170 YELQVADYDGAN-PQT---ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF------------- 232 (417)
T ss_pred ceEEEEcCCCCC-CEE---eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-------------
Confidence 358888876442 222 22344468889999999999987654 4899999988765433221
Q ss_pred CCCceecEEEEEEeCCCCEEEEE-ecCC--eEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeC-CC--eEEE
Q 013436 223 DGGYSFGIFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV 296 (443)
Q Consensus 223 ~~~~~~~i~~l~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~i 296 (443)
...+.+++|+|||+.|+.. +.++ .|++||+.+++. ..+..+........|+ ++++.|+..+. ++ .|.+
T Consensus 233 ----~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 233 ----PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred ----CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEE
Confidence 1145568999999877654 4343 599999987754 3444555555677897 67777766554 33 5777
Q ss_pred EecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC---CEEEEeCCC
Q 013436 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRK 347 (443)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~iwd~~~ 347 (443)
+|+. .++ ...+..+...+..+.|+|++++|+.++.++ .|.+||+.+
T Consensus 307 ~d~~----~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 307 MDAD----GGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred EECC----CCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 7775 333 233444455677889999999999887765 788888876
No 237
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=8.1e-13 Score=127.15 Aligned_cols=199 Identities=18% Similarity=0.253 Sum_probs=153.8
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeE
Q 013436 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (443)
Q Consensus 172 v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i 251 (443)
|....+.-+...++.++.++.+.+||...+.........+.. .-....-+.++++.-++++|+.-+.|
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~------------~l~~~~~~g~s~~~~~i~~gsv~~~i 157 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC------------TLYSSLIIGDSAEELYIASGSVFGEI 157 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceE------------EEEeEEEEeccCcEEEEEeccccccE
Confidence 444555567788999999999999999877654433322211 00123334556677789999999999
Q ss_pred EEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceee-eecCCCCCeEEEEECCCCCE
Q 013436 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRY 330 (443)
Q Consensus 252 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 330 (443)
.+|+....+....+.+|.+.|.++.++ .++.++++.++|.++++|++. +.+... ..-+|...|..+.|.|+ .
T Consensus 158 ivW~~~~dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~----s~~~~~~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 158 IVWKPHEDNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPID----SREVLGCTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred EEEeccccCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeecc----cccccCcccccccceeEEEEeccc--e
Confidence 999987555555688999999999997 999999999999999999998 444443 66689999999999998 8
Q ss_pred EEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCc
Q 013436 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (443)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 410 (443)
+++++.|.+.++|+.+. ..+..|.+|.. +..|..+.+++.
T Consensus 231 i~t~gedctcrvW~~~~-----------------------------------~~l~~y~~h~g-----~~iw~~~~~~~~ 270 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNG-----------------------------------TQLEVYDEHSG-----KGIWKIAVPIGV 270 (967)
T ss_pred eEEeccceEEEEEeccc-----------------------------------ceehhhhhhhh-----cceeEEEEcCCc
Confidence 99999999999997654 44557777763 233444555678
Q ss_pred cEEEEeeCCCeEEEEEccC
Q 013436 411 KYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 411 ~~l~tg~~dg~v~iwd~~~ 429 (443)
..++|++.||.+++||+..
T Consensus 271 ~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEeeccCcchhhhhhhc
Confidence 8999999999999999864
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.51 E-value=3.4e-12 Score=106.02 Aligned_cols=192 Identities=21% Similarity=0.206 Sum_probs=136.4
Q ss_pred CCeEEEEECCCCeEEEEeeecCCccceEEEEEECC---CCC-eEEEEECCCeEEEEECCCCceeccccceecccCceeec
Q 013436 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (443)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (443)
-|.+.+|++...+.+............+..+.|.. ++. .++-+...|.|.++...........+...... ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k---i~- 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK---IS- 120 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh---hh-
Confidence 46788999887644331111222233477777764 444 56667788999998876543322222111100 00
Q ss_pred cCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeee--EEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEe
Q 013436 221 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (443)
Q Consensus 221 ~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd 298 (443)
.....++.|++.+..++++..+|.+.+-+....... +.++.|.-.+....|+..+.+++++|++|+.+..||
T Consensus 121 ------~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 121 ------VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred ------heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence 003567889999999999999999997776555433 378899999999999988899999999999999999
Q ss_pred cccCCCCCceeee-ecCCCCCeEEEEECC-CCCEEEEEeCCCCEEEEeCCCCC
Q 013436 299 RRCLNVKGKPAGV-LMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 299 ~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
+|. .++.+.. ..-|..+|.+|.-+| .+.++++|+.|..|++||.|++.
T Consensus 195 ~R~---p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 195 IRI---PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred ecC---CcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 992 3344443 556889999999886 57899999999999999999754
No 239
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.51 E-value=3.1e-12 Score=108.48 Aligned_cols=215 Identities=15% Similarity=0.198 Sum_probs=151.8
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECC-CCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
...++||.+.|+....-|...-+++.+.|.+++||--. .++.... .......+++++.++++...|+++-..|++.-
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps--I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS--IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch--hhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 34568899999999999988889999999999999543 3322222 22334557999999999999999999999988
Q ss_pred EECCCCcee-ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC--------------------------
Q 013436 196 VDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------------------------- 248 (443)
Q Consensus 196 wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-------------------------- 248 (443)
+.+...-.. ...+.. ..|...+..+-|+-..+++++.+.|
T Consensus 95 fs~sedfnkm~~~r~~-------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~ 161 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDY-------------LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASAL 161 (404)
T ss_pred EEhhhhhhhcchhhhh-------------hhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCC
Confidence 876432110 000100 1233344444444444444443333
Q ss_pred -------------CeEEEEEC--CCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec
Q 013436 249 -------------DCIYVYDL--EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 313 (443)
Q Consensus 249 -------------g~i~iwd~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 313 (443)
|.|.+..+ ..-.++.++.+|.+.+++++|. +...++.+|..|..+.+||+-. .......+.
T Consensus 162 ~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdigg---~~g~~~el~ 237 (404)
T KOG1409|consen 162 QFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIGG---RKGTAYELQ 237 (404)
T ss_pred ceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEeccC---Ccceeeeec
Confidence 33332222 2234556777999999999995 8888999999999999999962 334456778
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 314 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
+|...|..+..-+--+.|++++.||.|.+||++....
T Consensus 238 gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 238 GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred cchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 9999999998888888999999999999999987553
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.7e-11 Score=116.44 Aligned_cols=204 Identities=16% Similarity=0.138 Sum_probs=131.9
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEECC---CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE-EEC
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASM 189 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~~ 189 (443)
...+..+..+...+...+|||||+.|+..+.+ ..|.+||+.++.... .. ...+.+...+|+|||+.|+. ...
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~---~~~g~~~~~~~SpDG~~la~~~~~ 263 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-IT---NFEGLNGAPAWSPDGSKLAFVLSK 263 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-cc---CCCCCcCCeEECCCCCEEEEEEcc
Confidence 34456667778889999999999999876543 369999999874332 11 22223556899999998875 444
Q ss_pred CC--eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC---CeEEEEECCCCeeeEE
Q 013436 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLR 264 (443)
Q Consensus 190 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~ 264 (443)
+| .|++||+.++....+... ........|+|||+.|+..+.. ..|+++|+.+++.. .
T Consensus 264 ~g~~~Iy~~d~~~~~~~~lt~~-----------------~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~ 325 (430)
T PRK00178 264 DGNPEIYVMDLASRQLSRVTNH-----------------PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-R 325 (430)
T ss_pred CCCceEEEEECCCCCeEEcccC-----------------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence 44 688889988765443221 1134457899999988776643 35888898877643 3
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCC-C--eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-C--
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDD-N--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q-- 338 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g-- 338 (443)
+...........|+ ++++.|+..+.+ + .|.+||+. .+.. ..+.. ........|+|||+.++..+.+ +
T Consensus 326 lt~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~----tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~ 398 (430)
T PRK00178 326 VTFVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQ----RGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRG 398 (430)
T ss_pred eecCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECC----CCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCce
Confidence 32222333457887 777777766543 3 57888886 4333 22221 1222356899999998866643 3
Q ss_pred CEEEEeCC
Q 013436 339 AIKLWDIR 346 (443)
Q Consensus 339 ~i~iwd~~ 346 (443)
.+.++++.
T Consensus 399 ~l~~~~~~ 406 (430)
T PRK00178 399 VLMLVSIN 406 (430)
T ss_pred EEEEEECC
Confidence 35666664
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.3e-11 Score=115.19 Aligned_cols=204 Identities=15% Similarity=0.102 Sum_probs=127.5
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEECC---CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE-EEC
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASM 189 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~~ 189 (443)
......+..+...+....|||||+.|+..+.+ ..|.+||+.+++... .....+ .....+|+|||+.|+. .+.
T Consensus 207 G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g---~~~~~~wSPDG~~La~~~~~ 282 (448)
T PRK04792 207 GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPG---INGAPRFSPDGKKLALVLSK 282 (448)
T ss_pred CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCC---CcCCeeECCCCCEEEEEEeC
Confidence 33345566677788999999999998876543 258899998874322 111222 2446899999998875 455
Q ss_pred CC--eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-C--CeEEEEECCCCeeeEE
Q 013436 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEANKLSLR 264 (443)
Q Consensus 190 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~ 264 (443)
++ .|+++|+.+++...+... .......+|+|||+.|+..+. + ..|+++|+.+++.. .
T Consensus 283 ~g~~~Iy~~dl~tg~~~~lt~~-----------------~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~ 344 (448)
T PRK04792 283 DGQPEIYVVDIATKALTRITRH-----------------RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-R 344 (448)
T ss_pred CCCeEEEEEECCCCCeEECccC-----------------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence 66 488888887765433221 113456789999998877654 2 35788888877643 3
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeC-CC--eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC-CCC-
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA- 339 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~- 339 (443)
+..........+|+ +++++|+..+. ++ .|.++|+. .+.. ..+... .......|+|+|+.|+..+. ++.
T Consensus 345 Lt~~g~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~----~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~ 417 (448)
T PRK04792 345 LTFEGEQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLE----TGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQ 417 (448)
T ss_pred EecCCCCCcCeeEC-CCCCEEEEEEecCCceEEEEEECC----CCCe-EEccCC-CCCCCceECCCCCEEEEEEecCCce
Confidence 32222333457897 77777766554 44 45556765 3332 223222 12234579999998876554 333
Q ss_pred -EEEEeCC
Q 013436 340 -IKLWDIR 346 (443)
Q Consensus 340 -i~iwd~~ 346 (443)
+.+++..
T Consensus 418 ~l~~~~~~ 425 (448)
T PRK04792 418 VLAAVSID 425 (448)
T ss_pred EEEEEECC
Confidence 5666654
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=1.1e-11 Score=117.71 Aligned_cols=203 Identities=17% Similarity=0.169 Sum_probs=137.7
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEECC---CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE-EC
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SM 189 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~ 189 (443)
......+..+...+...+|+|||++|+.+..+ ..|++||+.++..... ..+...+.+++|+||++.|+.. +.
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~----~~~~~~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV----ASFPGMNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe----ecCCCCccceEECCCCCEEEEEECC
Confidence 44556677777889999999999999987654 4799999998743321 1233446678999999987754 44
Q ss_pred CC--eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-C--eEEEEECCCCeeeEE
Q 013436 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLR 264 (443)
Q Consensus 190 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~ 264 (443)
++ .|++||+.++....+.... .......|+|||+.|+..+.. + .|+++|+.+++. ..
T Consensus 255 ~~~~~i~~~d~~~~~~~~l~~~~-----------------~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~ 316 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQLTRLTNGP-----------------GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RR 316 (417)
T ss_pred CCCccEEEEECCCCCEEECCCCC-----------------CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EE
Confidence 44 6889999877654332211 123456899999988776653 2 688899887764 34
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCCC---eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC---
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--- 338 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--- 338 (443)
+..+...+..+.|+ +++++++.++.++ .|.+||+. .+.. ..+... .......|+|++++|+..+.++
T Consensus 317 l~~~~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~----~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~ 389 (417)
T TIGR02800 317 LTFRGGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLD----GGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRG 389 (417)
T ss_pred eecCCCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCC----CCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcE
Confidence 44455667788997 7788888877765 78888886 3322 223222 2334568999999888777654
Q ss_pred CEEEEeC
Q 013436 339 AIKLWDI 345 (443)
Q Consensus 339 ~i~iwd~ 345 (443)
.+.+.+.
T Consensus 390 ~l~~~~~ 396 (417)
T TIGR02800 390 VLGLVST 396 (417)
T ss_pred EEEEEEC
Confidence 3444443
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.49 E-value=3.3e-10 Score=103.93 Aligned_cols=270 Identities=18% Similarity=0.223 Sum_probs=161.1
Q ss_pred CCceEEEEECCCCCEEEEEEC----CCeEEEEECCCC-eEEEEeeecCCccceEEEEEECCCCCeEEEEEC-CCeEEEEE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQ----ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVD 197 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~----d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg~i~iwd 197 (443)
......++++|++++|.+... ++.|..|++... ..+...............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345567889999999999877 468999988764 233332222212334667999999999999875 78999999
Q ss_pred CCCC-ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECCCCe--ee--EEee-ccCC
Q 013436 198 VGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK--LS--LRIL-AHTS 270 (443)
Q Consensus 198 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~--~~--~~~~-~~~~ 270 (443)
+... ......... .+.+. .+...........++.|+|+++++++... ...|++|++.... .. ..+. ....
T Consensus 116 l~~~g~l~~~~~~~-~~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 116 LDDDGSLGEVVQTV-RHEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp ECTTSEEEEEEEEE-ESEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred ccCCcccceeeeec-ccCCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9874 333222111 01000 00111112235778999999998887643 3579999987654 21 2222 3456
Q ss_pred CeEEEEEeCCCCCEEEE-eeCCCeEEEEecccCCCCCceeeeecC----C--CCCeEEEEECCCCCEEEEEe-CCCCEEE
Q 013436 271 DVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLMG----H--LEGITFIDSRGDGRYLISNG-KDQAIKL 342 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~----~--~~~v~~~~~~~~~~~l~s~~-~dg~i~i 342 (443)
..+.+.|+ ++++++++ ...++.|.++++.......+.+..... . ......|+++|||++|.++. ..+.|.+
T Consensus 193 GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 193 GPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCcEEEEc-CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 67899998 67776655 456788999998722111222222221 1 12578899999999987665 4678999
Q ss_pred EeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee-CCCe
Q 013436 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSC 421 (443)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~-~dg~ 421 (443)
|++...... -..+..+.... ... .+..++|+|++|+++. .++.
T Consensus 272 f~~d~~~g~------------------------------l~~~~~~~~~G--~~P----r~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 272 FDLDPATGT------------------------------LTLVQTVPTGG--KFP----RHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp EEECTTTTT------------------------------EEEEEEEEESS--SSE----EEEEE-TTSSEEEEEETTTTE
T ss_pred EEEecCCCc------------------------------eEEEEEEeCCC--CCc----cEEEEeCCCCEEEEEecCCCe
Confidence 999542100 01122222111 111 2223567999999887 5678
Q ss_pred EEEEEc--cChhhh
Q 013436 422 VYVYDL--VSIQIL 433 (443)
Q Consensus 422 v~iwd~--~~g~~~ 433 (443)
|.+|++ .+|++.
T Consensus 316 v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 316 VSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEEEETTTTEEE
T ss_pred EEEEEEeCCCCcEE
Confidence 999976 466654
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3.8e-11 Score=114.13 Aligned_cols=173 Identities=20% Similarity=0.247 Sum_probs=112.8
Q ss_pred eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC---CeEEEEECCCCceeccccceecccCceeeccCC
Q 013436 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (443)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (443)
.|.++|.+.+. ... ...+...+...+|+|||+.|+..+.+ ..|.+||+.+++...+.....
T Consensus 180 ~l~~~d~~g~~-~~~---l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g------------ 243 (430)
T PRK00178 180 TLQRSDYDGAR-AVT---LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG------------ 243 (430)
T ss_pred EEEEECCCCCC-ceE---EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC------------
Confidence 47778887553 222 22334568899999999999887644 379999998886644332111
Q ss_pred CCceecEEEEEEeCCCCEEEE-EecCC--eEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee-CCC--eEEEE
Q 013436 224 GGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVW 297 (443)
Q Consensus 224 ~~~~~~i~~l~~~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~--~i~iw 297 (443)
.+....|+|||+.|+. .+.+| .|++||+.+++. ..+..+........|+ ++++.|+..+ .++ .|.++
T Consensus 244 -----~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 244 -----LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred -----CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEE
Confidence 3446899999998874 44444 689999988764 3455555566778897 6777665554 334 56667
Q ss_pred ecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-C--CEEEEeCCC
Q 013436 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q--AIKLWDIRK 347 (443)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~ 347 (443)
|+. .++.. .+...........|+|+|+.|+..+.+ + .|.+||+.+
T Consensus 317 d~~----~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 317 NVN----GGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred ECC----CCCEE-EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 765 33332 222122233457899999999876653 3 477888876
No 245
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.48 E-value=2.9e-12 Score=125.25 Aligned_cols=219 Identities=13% Similarity=0.118 Sum_probs=142.7
Q ss_pred ecCCccceEEEEEECCCC-CeEEEEECCCeEEEEECCCCcee-ccccceecccCceeeccCCCCceecEEEEEEeCCCCE
Q 013436 164 LAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (443)
Q Consensus 164 ~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 241 (443)
.+..|...|..++.++.. .++++|+.||+|++|+...-... ...+.. ..+. .....+.++.+.+.+..
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~-----ltys-----~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSE-----LTYS-----PEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeee-----EEEe-----ccCCceEEEEeccCCCe
Confidence 456777788888888765 99999999999999998653222 111100 0000 01237889999999999
Q ss_pred EEEEecCCeEEEEECCCCe-------eeEEeecc-CCCeEEE-EEeCCCCC-EEEEeeCCCeEEEEecccCCCCCceeee
Q 013436 242 LVAGSSDDCIYVYDLEANK-------LSLRILAH-TSDVNTV-CFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGV 311 (443)
Q Consensus 242 l~~~~~dg~i~iwd~~~~~-------~~~~~~~~-~~~v~~i-~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 311 (443)
+|+++.||.|.+.++.... +......+ .+.+.+| ++...... .++.+...+.|..||++ .......
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r----~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR----MRHDAWR 1188 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch----hhhhHHh
Confidence 9999999999999987621 11111111 2233333 34323333 78888899999999998 3333333
Q ss_pred e--cCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEe
Q 013436 312 L--MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (443)
Q Consensus 312 ~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (443)
+ ....+.|++++.+|.+.+++.|+..|.+-+||+|=..+ +..+.
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~----------------------------------i~sw~ 1234 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP----------------------------------ILSWE 1234 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce----------------------------------eeccc
Confidence 2 23457899999999999999999999999999997332 22222
Q ss_pred ccceeeeeeEEEecCCccCCccEEEEee--CCCeEEEEEccChhh
Q 013436 390 GHSVLRTLIRCHFSPVYSTGQKYIYTGS--HDSCVYVYDLVSIQI 432 (443)
Q Consensus 390 ~~~~~~~~~~~~~~~~~s~d~~~l~tg~--~dg~v~iwd~~~g~~ 432 (443)
-.. .....++..+| +.|.....++++ ..+.|.+|++.+|..
T Consensus 1235 ~P~-~~~i~~v~~~~-~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1235 HPA-RAPIRHVWLCP-TYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred Ccc-cCCcceEEeec-cCCCCceEEEecccCCCceeeeecccCcc
Confidence 111 12222333333 333445555544 578899999998854
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=1.7e-12 Score=125.04 Aligned_cols=202 Identities=18% Similarity=0.228 Sum_probs=158.2
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCc-cceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
.+.|....+.-+.+.++.++.++.+.+||...+....+....... -....-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 334444667777888999999999999999887554443222111 1122234457777899999999999999987221
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE-EeeccCCCeEEEEEeCCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDES 281 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~ 281 (443)
.. . ...||.+.|..+.|+-||+++++.|+|.++++|++.+.+... ..-+|+..|..+++. ++
T Consensus 167 ~p-~---------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n 229 (967)
T KOG0974|consen 167 KP-I---------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN 229 (967)
T ss_pred Cc-c---------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc
Confidence 11 1 123788899999999999999999999999999999987665 566999999999997 44
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCC-CeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
.+++++.|.+.++|+. .+..+..+.+|.. .|..++..++...++|++.|+.+++||+....
T Consensus 230 --~i~t~gedctcrvW~~-----~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 230 --RIITVGEDCTCRVWGV-----NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred --eeEEeccceEEEEEec-----ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 8999999999999976 5666667877754 78999999999999999999999999987643
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=7.6e-13 Score=133.54 Aligned_cols=198 Identities=12% Similarity=0.183 Sum_probs=152.0
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
..+-..|.++.=+|...+.++|+.||.|++|....+..+........ ..|+.+.|+.+|+.+..+..||.+.+|.+..
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccCC
Confidence 44556788888889999999999999999999988877766544433 6799999999999999999999999999873
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe---cCCeEEEEECCCC-eeeEEeeccCCCeEEEE
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEAN-KLSLRILAHTSDVNTVC 276 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~ 276 (443)
.-..... .|.-...++.|-. ..+++++ .++.+.+||..-. ..-..-..|.+.+++++
T Consensus 2283 k~~~s~q-----------------chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2283 KPYTSWQ-----------------CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLA 2343 (2439)
T ss_pred cceeccc-----------------cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEE
Confidence 2221111 2444677777764 5566654 4678999995432 11112268999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
+. |..++|++|+.+|.|++||++ ..+.++.++. ++ ...+|++++..|.++||++.....+..+
T Consensus 2344 ~~-P~~qllisggr~G~v~l~D~r----qrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2344 YA-PKHQLLISGGRKGEVCLFDIR----QRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred Ec-CcceEEEecCCcCcEEEeehH----HHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 97 888999999999999999998 6666665554 44 5678999999999999999986554444
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=2.2e-11 Score=115.39 Aligned_cols=173 Identities=23% Similarity=0.201 Sum_probs=108.8
Q ss_pred eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC---CeEEEEECCCCceeccccceecccCceeeccCC
Q 013436 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (443)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (443)
.|.++|.+.... .. .......+....|+|||+.|+..+.+ ..|++||+.+++...+.....
T Consensus 199 ~l~i~d~dG~~~-~~---l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g------------ 262 (448)
T PRK04792 199 QLMIADYDGYNE-QM---LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG------------ 262 (448)
T ss_pred EEEEEeCCCCCc-eE---eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC------------
Confidence 577778765422 21 12334468889999999999877543 268899998876543322111
Q ss_pred CCceecEEEEEEeCCCCEEEE-EecCC--eEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee-CCC--eEEEE
Q 013436 224 GGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVW 297 (443)
Q Consensus 224 ~~~~~~i~~l~~~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~--~i~iw 297 (443)
.....+|+|||+.|+. .+.+| .|+++|+.+++. ..+..+.......+|+ ++++.|+..+ .++ .|.++
T Consensus 263 -----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 263 -----INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRV 335 (448)
T ss_pred -----CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEE
Confidence 2335799999998775 45555 488889988764 4455555566788998 6777666554 344 45666
Q ss_pred ecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC-CCC--EEEEeCCC
Q 013436 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA--IKLWDIRK 347 (443)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~ 347 (443)
|+. .++.. .+..........+|+|||++|+..+. ++. |.++|+.+
T Consensus 336 dl~----~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 336 NLA----SGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred ECC----CCCEE-EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC
Confidence 665 33332 22212223345789999999887655 343 44556655
No 249
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.4e-12 Score=115.38 Aligned_cols=280 Identities=12% Similarity=0.205 Sum_probs=193.1
Q ss_pred cccccceeecccccCCCccc-cCCCCceEEEEECCC--CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEE
Q 013436 101 AADCCHMLSRYLPVNGPWPV-DQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (443)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~ 177 (443)
+.+...++|..........+ .+|...|....|-|. .+-+++++.||.|++=.+.....+........|.++|.-++.
T Consensus 161 SDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav 240 (559)
T KOG1334|consen 161 SDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAV 240 (559)
T ss_pred CccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeee
Confidence 34556677877776665555 689999999999985 367999999999999887655455555667789999999999
Q ss_pred CCCC-CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEE
Q 013436 178 SPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYD 255 (443)
Q Consensus 178 s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd 255 (443)
-|+. ..|.+++.|+.+.-+|+.++.............. ..-...+++..|.. ..+++|+.|-.+++||
T Consensus 241 ~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~----------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD 310 (559)
T KOG1334|consen 241 EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK----------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYD 310 (559)
T ss_pred cCCCCCcccccccccceeeeeeccCCccceeeeeccCCc----------cceeeeeEecCCCCccccccCChhhhhhhhc
Confidence 9975 4678999999999999988766554442221111 01267789999955 4899999999999999
Q ss_pred CCCCe------eeEEee------ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC------C--Cceee-eecC
Q 013436 256 LEANK------LSLRIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV------K--GKPAG-VLMG 314 (443)
Q Consensus 256 ~~~~~------~~~~~~------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~--~~~~~-~~~~ 314 (443)
.+.-. .+.++. ...-.|++++|+ .++.-+.++-.|-.|+++....... . ...+. .+++
T Consensus 311 ~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG 389 (559)
T KOG1334|consen 311 QRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG 389 (559)
T ss_pred ccchhhccccchhhhcCCccccccCcccceeEEec-CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcc
Confidence 86532 122222 234568999998 4555555566677899985432110 0 02222 3778
Q ss_pred CCC--CeEEEE-ECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEecc
Q 013436 315 HLE--GITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (443)
Q Consensus 315 ~~~--~v~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (443)
|.. .|..+- |-|...|+++|+.-|.|.||+-.+ ++.++.+.+.
T Consensus 390 HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t----------------------------------~eii~~MegD 435 (559)
T KOG1334|consen 390 HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT----------------------------------GEIIRFMEGD 435 (559)
T ss_pred cccccccceeeeccCccceEEecCccceEEEEecch----------------------------------hHHHHHhhcc
Confidence 854 455665 567889999999999999999887 3344444444
Q ss_pred ceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 392 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 392 ~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
...+.++. -+| --..||+.|-|.-|+||-..+-+
T Consensus 436 r~VVNCLE--pHP----~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 436 RHVVNCLE--PHP----HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred cceEeccC--CCC----CCchhhccCCccceeeecCCccc
Confidence 43333332 122 23479999999999999875433
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=7e-11 Score=111.04 Aligned_cols=223 Identities=12% Similarity=0.071 Sum_probs=132.5
Q ss_pred CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCe--EE-EEECC--CeEEEEECCCCceeccccceecccCceeec
Q 013436 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH--LV-YASMS--PIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~--l~-~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (443)
..|.+.|.+.+.... +......+..-+|||||+. ++ +...+ ..|.+.++.+++...+.....
T Consensus 165 ~~l~~~d~dG~~~~~----lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g--------- 231 (428)
T PRK01029 165 GELWSVDYDGQNLRP----LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG--------- 231 (428)
T ss_pred ceEEEEcCCCCCceE----cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---------
Confidence 357777877653222 1122334667799999975 32 33333 368888998886554433221
Q ss_pred cCCCCceecEEEEEEeCCCCEEEEEec-----CCeEEEEECCCC---eeeEEeeccCCCeEEEEEeCCCCCEEEEee-CC
Q 013436 221 ADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGS-DD 291 (443)
Q Consensus 221 ~~~~~~~~~i~~l~~~~~~~~l~~~~~-----dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d 291 (443)
.....+|+|||+.|+..+. +..+.+|++..+ +...............+|+ ++|+.|+..+ .+
T Consensus 232 --------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~ 302 (428)
T PRK01029 232 --------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKD 302 (428)
T ss_pred --------CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCC
Confidence 3445799999998887653 223444777653 3222222223345678998 7787666554 56
Q ss_pred CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC---CCEEEEeCCCCCCccccCCcccccCcccccc
Q 013436 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 368 (443)
Q Consensus 292 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (443)
|...+|.+.... .+.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+.+
T Consensus 303 g~~~ly~~~~~~-~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~------------------- 362 (428)
T PRK01029 303 GRPRIYIMQIDP-EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR------------------- 362 (428)
T ss_pred CCceEEEEECcc-cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC-------------------
Confidence 655566543110 122334444455567788999999998876543 368999987732
Q ss_pred cCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC---CCeEEEEEccChhh
Q 013436 369 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSIQI 432 (443)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~---dg~v~iwd~~~g~~ 432 (443)
...+.... . ...+|.|+|||+.|+..+. ...|++||+.+++.
T Consensus 363 ----------------~~~Lt~~~--~----~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 363 ----------------DYQLTTSP--E----NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred ----------------eEEccCCC--C----CccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 11221111 0 1134567889998875433 45799999987764
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.1e-10 Score=109.63 Aligned_cols=212 Identities=16% Similarity=0.123 Sum_probs=129.0
Q ss_pred cCCCccccCCCCceEEEEECCCCCEE---EEEECCC--eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLF---VAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l---~~g~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~ 188 (443)
+..++.+......+..-+|||||+.+ ++...++ .|.+.++.++.... .... .+.....+|||||+.|+..+
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~---~g~~~~p~wSPDG~~Laf~s 249 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILAL---QGNQLMPTFSPRKKLLAFIS 249 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecC---CCCccceEECCCCCEEEEEE
Confidence 34455565566677888999999752 2444443 58888998774332 2222 22355689999999988765
Q ss_pred C-CC----eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe-cCCe--EEEEECCC-C
Q 013436 189 M-SP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDC--IYVYDLEA-N 259 (443)
Q Consensus 189 ~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~--i~iwd~~~-~ 259 (443)
. +| .+.+|++..+.......+... ........+|+|||+.|+..+ .+|. |+++++.. +
T Consensus 250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~-------------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGAIGKPRRLLNE-------------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred CCCCCcceeEEEeecccCCCCcceEeecC-------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 3 23 344467665321111111110 001234679999999888765 3554 55555542 2
Q ss_pred eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCC---CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 013436 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 336 (443)
.....+..+...+....|+ ++++.|+..+.+ ..|.+||+. .++.. .+......+....|+|||+.|+....
T Consensus 317 ~~~~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~----~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLA----TGRDY-QLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred cceEEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECC----CCCeE-EccCCCCCccceEECCCCCEEEEEEC
Confidence 3344455555667889998 778877765543 368999986 44443 33333345678999999998875443
Q ss_pred ---CCCEEEEeCCCC
Q 013436 337 ---DQAIKLWDIRKM 348 (443)
Q Consensus 337 ---dg~i~iwd~~~~ 348 (443)
...|.++|+...
T Consensus 391 ~~g~~~L~~vdl~~g 405 (428)
T PRK01029 391 NSNESELYLISLITK 405 (428)
T ss_pred CCCCceEEEEECCCC
Confidence 346888888763
No 252
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.42 E-value=1.6e-12 Score=109.61 Aligned_cols=225 Identities=15% Similarity=0.164 Sum_probs=145.5
Q ss_pred EEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEE-EecCCeEEE
Q 013436 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYV 253 (443)
Q Consensus 175 i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~dg~i~i 253 (443)
.+|||+|+++|+++.- .+.|-|.++-+....+...+ .|.-+.|..|..++++ ...++.|.+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cld-----------------ki~yieW~ads~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLD-----------------KIVYIEWKADSCHILCVAYKDPKVQV 75 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHH-----------------HhhheeeeccceeeeeeeeccceEEE
Confidence 6799999999998877 78888888877665554432 5667889888876555 466789999
Q ss_pred EECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEE
Q 013436 254 YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS 333 (443)
Q Consensus 254 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 333 (443)
|++...+-..++.....++.+++|+|....+|.+...|-.|.+|.+. +.+.. .+.-....+..++|+|||++.+.
T Consensus 76 wsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~----t~~~~-~~~~pK~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 76 WSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN----TQKGY-LLPHPKTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred EEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEec----cceeE-EecccccCceeEEECCCCceeee
Confidence 99999998889988899999999984444777788889999999996 43333 33333456688999999999988
Q ss_pred EeCCCCEEEEeCC---CCCCccccCCcccccCcccccccCCCCCCcccCCCC---eeEEEEeccceeeeeeEEEecCCcc
Q 013436 334 NGKDQAIKLWDIR---KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD---QSVATYKGHSVLRTLIRCHFSPVYS 407 (443)
Q Consensus 334 ~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s 407 (443)
++.-.....+.+. ....+.. ......+...+.++|++..++.=.. -.+..|... ..+.. ..||
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~----f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~---lG~k~----v~ws 219 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKE----FKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG---LGLKF----VEWS 219 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHh----cCCCcccccCceECCCCcEEEEecchhhheeeeeeec---cceeE----EEec
Confidence 7753221111111 1111111 1111222333444555443332111 111111111 11222 2466
Q ss_pred CCccEEEEeeCCCeEEEEEccChhhh
Q 013436 408 TGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 408 ~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
|-+++|+.|+.|+.++|-+-.+=+.+
T Consensus 220 P~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 220 PCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred cccceEEeeccchhhhhhceeeeeeh
Confidence 67999999999999999776554433
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1.1e-12 Score=132.34 Aligned_cols=197 Identities=18% Similarity=0.241 Sum_probs=157.2
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCe
Q 013436 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~ 250 (443)
.|.++.-+|...+.++|+.||.|++|....++.+....... . ..|+.+.|+.+|+.+..+..||.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--------------~-s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--------------N-SRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--------------c-chhhhhhhcccCCceeeeccCCc
Confidence 48888889999999999999999999998887665544332 2 47999999999999999999999
Q ss_pred EEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee---CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC
Q 013436 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (443)
Q Consensus 251 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (443)
+.+|.+. .++....+.|......+.|. . ..+++++ .++.+.+||..... ....+. ..|.++++++++-|.
T Consensus 2275 l~l~q~~-pk~~~s~qchnk~~~Df~Fi-~--s~~~tag~s~d~~n~~lwDtl~~~-~~s~v~--~~H~~gaT~l~~~P~ 2347 (2439)
T KOG1064|consen 2275 LSLWQAS-PKPYTSWQCHNKALSDFRFI-G--SLLATAGRSSDNRNVCLWDTLLPP-MNSLVH--TCHDGGATVLAYAPK 2347 (2439)
T ss_pred eeecccC-CcceeccccCCccccceeee-e--hhhhccccCCCCCcccchhcccCc-ccceee--eecCCCceEEEEcCc
Confidence 9999986 66777788899999999996 3 5666654 56899999976321 223333 789999999999999
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCcc
Q 013436 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (443)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (443)
.+.|++|+.+|.|++||++..+ .+..|+. +.
T Consensus 2348 ~qllisggr~G~v~l~D~rqrq----------------------------------l~h~~~~---------------~~ 2378 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQRQ----------------------------------LRHTFQA---------------LD 2378 (2439)
T ss_pred ceEEEecCCcCcEEEeehHHHH----------------------------------HHHHhhh---------------hh
Confidence 9999999999999999999833 2333322 11
Q ss_pred CCccEEEEeeCCCeEEEEEccChhhhhHhHHh
Q 013436 408 TGQKYIYTGSHDSCVYVYDLVSIQILFCRQSL 439 (443)
Q Consensus 408 ~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~~~ 439 (443)
...++++|+..|.++||++..-.+++.+...
T Consensus 2379 -~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2379 -TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred -hhheeeccCcccceEEEEccccchhhcCchh
Confidence 2568999999999999999988887776544
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=5.3e-11 Score=108.24 Aligned_cols=195 Identities=16% Similarity=0.185 Sum_probs=149.8
Q ss_pred CCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEE--------------------eCC
Q 013436 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--------------------STD 238 (443)
Q Consensus 179 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--------------------~~~ 238 (443)
|-..++|....||.+++|+...++...-+....... +...+..| +.+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s-------------~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLS-------------GTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhcc-------------CcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 456789999999999999999887654433221111 12222222 123
Q ss_pred CCEEEEEecCCeEEEEECCCCeeeEEee--ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC
Q 013436 239 GRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (443)
Q Consensus 239 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 316 (443)
...++-|...|.|.+|++..++...++. .|.+.|+++.++ .+-..|.+++.|+.+..|+.. ....++.+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~----~~~~~~~~~~~~ 144 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEK----EKVIIRIWKEQK 144 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecc----cceeeeeeccCC
Confidence 4578888899999999999999888776 689999999997 778899999999999999998 888888898888
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeee
Q 013436 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (443)
..+.+++.+||+..|++++ +.|++||+++ .+.+..|.||.....
T Consensus 145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~----------------------------------kevv~~ftgh~s~v~ 188 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS--RQIKVLDIET----------------------------------KEVVITFTGHGSPVR 188 (541)
T ss_pred CccceEEEcCCCCEEEecc--ceEEEEEccC----------------------------------ceEEEEecCCCcceE
Confidence 8999999999999999987 5799999999 677999999997766
Q ss_pred eeEEEecCCccCC-ccEEEE-eeCCCeEEEEEccC
Q 013436 397 LIRCHFSPVYSTG-QKYIYT-GSHDSCVYVYDLVS 429 (443)
Q Consensus 397 ~~~~~~~~~~s~d-~~~l~t-g~~dg~v~iwd~~~ 429 (443)
.+..... ++-. |.++.+ ...+..+.+|-+..
T Consensus 189 t~~f~~~--~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 189 TLSFTTL--IDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEe--ccccccceeeeccccccceeEEEEEc
Confidence 6654433 2222 555554 44566788887654
No 255
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.4e-11 Score=111.37 Aligned_cols=208 Identities=14% Similarity=0.180 Sum_probs=151.1
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceecccc
Q 013436 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 208 (443)
.++++.-..-|+.++....|+-++++.|..+..... ..+.++++..++-..+|++|+.+|.|..||.+.........
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEcccccccccccc---ccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence 344443333344455556789999999976664333 33579999999999999999999999999998876544433
Q ss_pred ceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee-ccCCCeEEEEEeCCCCCEEEE
Q 013436 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYS 287 (443)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~ 287 (443)
...... ..+.......|+++.|+.+|-.+++|+.+|.|+|||+++.+++..-. ...-+|..+.|.+.++.--+.
T Consensus 215 ~~~~v~-----s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~ 289 (703)
T KOG2321|consen 215 AASSVN-----SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV 289 (703)
T ss_pred cccccC-----CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEE
Confidence 322111 01111123369999999999999999999999999999998776543 345688999997554433334
Q ss_pred eeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 288 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
......++|||-. +++....+... ..++.+++-|++-+++++-.+..|..|-+...-
T Consensus 290 S~Dk~~~kiWd~~----~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 290 SMDKRILKIWDEC----TGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred ecchHHhhhcccc----cCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 4456689999998 77877777643 459999999999999999999888888777643
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=4.2e-11 Score=101.77 Aligned_cols=228 Identities=17% Similarity=0.245 Sum_probs=161.5
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCe-EEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
.......+++++.+.++...|++|-..|++.-+.+...- +.........|...|..+-|+-....+++.+.|..+.---
T Consensus 63 I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc 142 (404)
T KOG1409|consen 63 IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHC 142 (404)
T ss_pred hhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEe
Confidence 345567889999999999999999999999998876531 2222234456888899999988888888888887655433
Q ss_pred CCCCceeccccceecccC-------------------ceeec------cCCCCceecEEEEEEeCCCCEEEEEecCCeEE
Q 013436 198 VGSGTMESLANVTEIHDG-------------------LDFSA------ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~-------------------~~~~~------~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 252 (443)
.+.+....-......... +.+.. ....+|.+++.+++|.|....|++|..|..|.
T Consensus 143 ~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi 222 (404)
T KOG1409|consen 143 TESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI 222 (404)
T ss_pred eccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence 333332211111111100 01111 11257899999999999999999999999999
Q ss_pred EEECCCCe-eeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC---------------------------
Q 013436 253 VYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------------------------- 304 (443)
Q Consensus 253 iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------------------- 304 (443)
+||+--++ ....+.+|...|..++.. +--+.+.+++.||.|.+||+.....
T Consensus 223 ~wdigg~~g~~~el~gh~~kV~~l~~~-~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~ 301 (404)
T KOG1409|consen 223 MWDIGGRKGTAYELQGHNDKVQALSYA-QHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWD 301 (404)
T ss_pred EEeccCCcceeeeeccchhhhhhhhhh-hhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHh
Confidence 99986654 334667899999999997 7778899999999999999761100
Q ss_pred ---------------------------------------------------CCceeeeecCCCCCeEEEEECCCCCEEEE
Q 013436 305 ---------------------------------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLIS 333 (443)
Q Consensus 305 ---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 333 (443)
+..++..+..-...|+.+.+...-..|++
T Consensus 302 ~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvT 381 (404)
T KOG1409|consen 302 RKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVT 381 (404)
T ss_pred hhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceee
Confidence 01112222222346888888777788999
Q ss_pred EeCCCCEEEEeCCC
Q 013436 334 NGKDQAIKLWDIRK 347 (443)
Q Consensus 334 ~~~dg~i~iwd~~~ 347 (443)
++.|..|+|||++.
T Consensus 382 sG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 382 SGTDRVIKIWDVRS 395 (404)
T ss_pred cCCceEEEEEechh
Confidence 99999999999987
No 257
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=1.6e-11 Score=102.97 Aligned_cols=223 Identities=17% Similarity=0.266 Sum_probs=147.0
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCe-EEEEee-ecCCc------------cceEEEEEECCCC--CeEEEE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDI-LAKSL------------RWTVTDTSLSPDQ--RHLVYA 187 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~-~~~~~~-~~~~~------------~~~v~~i~~s~~~--~~l~~~ 187 (443)
...|+++.|...|.||++|...|.|.+|.-+... +-.+.. ..++| ...|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999765431 111111 11222 2357888887654 467777
Q ss_pred ECCCeEEEEECCCCceeccccceecccCcee------------------------ecc----CCCCceecEEEEEEeCCC
Q 013436 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDF------------------------SAA----DDGGYSFGIFSLKFSTDG 239 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------------~~~----~~~~~~~~i~~l~~~~~~ 239 (443)
+.|.+|++|.+.......+.. ....++..+ ... ....|...|.++.|+.|.
T Consensus 106 tNdktiKlWKiyeknlk~va~-nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAE-NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhc-cccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 899999999987553211110 000000000 000 114678889999999988
Q ss_pred CEEEEEecCCeEEEEECCCCee---eEEeecc-----CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCce---
Q 013436 240 RELVAGSSDDCIYVYDLEANKL---SLRILAH-----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP--- 308 (443)
Q Consensus 240 ~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--- 308 (443)
..++++ .|-.|.+|++.-... +..++.| ..-|++..|+|...+.+.-.+..|.|++-|+|....-...
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 877776 577799999865321 2222233 3457888999888888888889999999999832111111
Q ss_pred ---------eeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 309 ---------AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 309 ---------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
..-+.+-...|..+.|+++|+++++-+. -+|+|||++..+
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 1112223457888999999999998765 579999999854
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.7e-10 Score=102.15 Aligned_cols=238 Identities=19% Similarity=0.238 Sum_probs=155.9
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC--CeEEE-----EECCCeEEEEECCC
Q 013436 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVY-----ASMSPIVHIVDVGS 200 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~~-----~~~dg~i~iwd~~~ 200 (443)
++..|++|..+.|-- ..+.+.+|+......+... -|...|+.+.+||.+ ..+|+ .+.-..|+||....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~k----l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHK----LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceeee----eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 788999988754433 3467999999875433332 234459999999973 34443 34455899998863
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEE-EEEe--cC---------CeEEEEECCCCeeeEEeecc
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGS--SD---------DCIYVYDLEANKLSLRILAH 268 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~--~d---------g~i~iwd~~~~~~~~~~~~~ 268 (443)
............. ...=-.+.|++-|+-| +.++ -| ..+++++++...+...+ ..
T Consensus 204 ~~~~~~~a~ksFF-------------kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k 269 (566)
T KOG2315|consen 204 EGQHQPVANKSFF-------------KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LK 269 (566)
T ss_pred ccccchhhhcccc-------------ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CC
Confidence 3222211111100 0123357788766532 2222 22 36889998855555555 44
Q ss_pred CCCeEEEEEeCCCCCEEEE--eeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC---CCCEEEE
Q 013436 269 TSDVNTVCFGDESGHLIYS--GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK---DQAIKLW 343 (443)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~iw 343 (443)
.++|.+++|+ +++.-+++ |-.-..+.|||++ +.++..+ ..++-+++-|+|.|++++.++- -|.|-||
T Consensus 270 ~GPVhdv~W~-~s~~EF~VvyGfMPAkvtifnlr-----~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 270 EGPVHDVTWS-PSGREFAVVYGFMPAKVTIFNLR-----GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred CCCceEEEEC-CCCCEEEEEEecccceEEEEcCC-----CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 7899999998 66654443 5567899999995 6777666 4567789999999999998876 4889999
Q ss_pred eCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC-----
Q 013436 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----- 418 (443)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~----- 418 (443)
|+.+.+++... .... ..-+ .|+|||.+++|++.
T Consensus 342 Dv~n~K~i~~~----------------------------------~a~~----tt~~----eW~PdGe~flTATTaPRlr 379 (566)
T KOG2315|consen 342 DVPNRKLIAKF----------------------------------KAAN----TTVF----EWSPDGEYFLTATTAPRLR 379 (566)
T ss_pred eccchhhcccc----------------------------------ccCC----ceEE----EEcCCCcEEEEEeccccEE
Confidence 99995544332 2211 1112 36779999999875
Q ss_pred -CCeEEEEEccChhhhhH
Q 013436 419 -DSCVYVYDLVSIQILFC 435 (443)
Q Consensus 419 -dg~v~iwd~~~g~~~~~ 435 (443)
|+.++||+. +|.+++.
T Consensus 380 vdNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 380 VDNGIKIWHY-TGSLLHE 396 (566)
T ss_pred ecCCeEEEEe-cCceeeh
Confidence 789999998 5776643
No 259
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.37 E-value=5.9e-10 Score=98.89 Aligned_cols=189 Identities=20% Similarity=0.186 Sum_probs=136.0
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeEEEEeeec-CCc---c-----ceEEEEE-ECC-CCCeEEEEECCCeEEEEECCC
Q 013436 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSL---R-----WTVTDTS-LSP-DQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 132 ~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~-~~~---~-----~~v~~i~-~s~-~~~~l~~~~~dg~i~iwd~~~ 200 (443)
.+.||+.++-. ..|.|.+||.++.. +.+.... .-. . .+..-+. |++ +|.+++..++ |...|.+...
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~-lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDS-LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCc-ceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence 34577777765 45789999988763 2222111 110 0 0111111 333 5788888776 5677777655
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC-eEEEEECCCCeeeEEeeccCCCeEEEEEeC
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (443)
+-.+++ ++...|.-..+.-+++-++.|..|| .|-|+|..+++ +..+...-+.|.++..+
T Consensus 351 ~~~iqv------------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs- 410 (668)
T COG4946 351 GYSIQV------------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVS- 410 (668)
T ss_pred CeeEEc------------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEc-
Confidence 544332 2444677778887888899999999 89999998887 45666778899999997
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC----CCEEEEeCCC
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----QAIKLWDIRK 347 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd~~~ 347 (443)
++|+.++.+.....+.+.|+. ++.....-....+-|+.++|+|+++++|-+--+ ..|+++|+..
T Consensus 411 ~dGK~~vvaNdr~el~vidid----ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDID----NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CCCcEEEEEcCceEEEEEEec----CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 999999999998999999998 666665556677889999999999999976554 4689999987
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=4.5e-09 Score=94.22 Aligned_cols=244 Identities=16% Similarity=0.172 Sum_probs=145.2
Q ss_pred ECCCCCEEEEEEC----------CCeEEEEECCCCeEEEEeeecCC----ccceEEEEEECCCCCeEEEEEC--CCeEEE
Q 013436 132 FSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKS----LRWTVTDTSLSPDQRHLVYASM--SPIVHI 195 (443)
Q Consensus 132 ~s~~~~~l~~g~~----------d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~i~~s~~~~~l~~~~~--dg~i~i 195 (443)
+||||+.|+++.. +..|.+||..+.+.+.++..... .......++++|||++|++... +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887765 67899999999977766554322 1122447899999999998763 679999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCC-Cee-eEE---eeccCC
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKL-SLR---ILAHTS 270 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~---~~~~~~ 270 (443)
.|+.+++.......... ..-...+++.. + +-+.||......+.. ++. ... +.....
T Consensus 133 vD~~~~kvv~ei~vp~~-----------------~~vy~t~e~~~-~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~ 193 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDC-----------------YHIFPTANDTF-F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE 193 (352)
T ss_pred EECCCCcEEEEEeCCCC-----------------cEEEEecCCcc-E-EEeecCceEEEEecCCCceEEeeeeeecCCcc
Confidence 99999987665443221 11111111111 1 112233333322211 111 111 111000
Q ss_pred CeE-EEEEeCCCCCEEEEeeCCCeEEEEecccCCC-CCceeeeecC-------CCCCeEEEEECCCCCEEEEEeC-----
Q 013436 271 DVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-KGKPAGVLMG-------HLEGITFIDSRGDGRYLISNGK----- 336 (443)
Q Consensus 271 ~v~-~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~----- 336 (443)
++. .-.|.+.++.++..... |.|.+.|+..... .......+.. ..+.+.-++++|+++.+.+...
T Consensus 194 ~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~ 272 (352)
T TIGR02658 194 YLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW 272 (352)
T ss_pred ccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence 100 00344457777777666 9999999642211 1222222211 2334455999999988877431
Q ss_pred -----CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEe-ccceeeeeeEEEecCCccCCc
Q 013436 337 -----DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQ 410 (443)
Q Consensus 337 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~d~ 410 (443)
.+.|.++|..+ .+.+..+. ++. .++..+|||+
T Consensus 273 thk~~~~~V~ViD~~t----------------------------------~kvi~~i~vG~~--------~~~iavS~Dg 310 (352)
T TIGR02658 273 THKTASRFLFVVDAKT----------------------------------GKRLRKIELGHE--------IDSINVSQDA 310 (352)
T ss_pred cccCCCCEEEEEECCC----------------------------------CeEEEEEeCCCc--------eeeEEECCCC
Confidence 24799999888 34444443 222 3455677899
Q ss_pred c-EEEEee-CCCeEEEEEccChhhhhHhH
Q 013436 411 K-YIYTGS-HDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 411 ~-~l~tg~-~dg~v~iwd~~~g~~~~~~~ 437 (443)
+ +|++.. .++.|.+.|..+++.+..+.
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 9 887666 58889999999999988773
No 261
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=1.3e-11 Score=114.70 Aligned_cols=285 Identities=18% Similarity=0.266 Sum_probs=189.4
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC--CeEEEEECCCeEEEEECCCC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~~~~~dg~i~iwd~~~~ 201 (443)
.+.+..+..+|.|+-+|.++.-| +.+.|++..-..... ..+...+.|-.+.|+|.. .+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~-l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRW-LHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCcee-eeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 45678889999999999998866 677787764222221 223344568888898853 34455555555668887644
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCe-eeEEeeccCCCeEEEEEeC
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGD 279 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~ 279 (443)
.-..+.-. ..||..+|+.+.|+|+. ..+++++.|-.+..||+++.. ++..+..-...-..++|+-
T Consensus 102 s~~aIef~-------------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 102 SSNAIEFV-------------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred CccceEEE-------------EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence 32211111 12578899999999955 578999999999999999864 4444544455678899997
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC-CCCEEEEEeCCCCEEEEeCCCCCCccccCCcc
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (443)
.+++.+|+ +..+.|.+||.+. .+.++..+++|...|+.++|.. ....+.+++.|++|++||..+...........
T Consensus 169 k~p~vlas-shg~~i~vwd~r~---gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 169 KDPNVLAS-SHGNDIFVWDLRK---GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred cCcchhhh-ccCCceEEEeccC---CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 77877765 4556899999993 4578888999999999999875 23457788999999999998866544443333
Q ss_pred cccCcccccccCCCC-------CCcc--------------cCCCCeeEEEEeccceeeeeeEEEec------CCccCCcc
Q 013436 359 RSYEWDYRWMDYPPQ-------ARDL--------------KHPCDQSVATYKGHSVLRTLIRCHFS------PVYSTGQK 411 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~-------~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~s~d~~ 411 (443)
....|.-+.+.|... +..+ +....+.+.+|.||...+ +...|- -++....-
T Consensus 245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V--~eFlWR~r~e~~~d~d~rdf 322 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV--LEFLWRKRKECDGDYDSRDF 322 (1081)
T ss_pred cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH--HHHhhhhcccccCCCCccce
Confidence 444444444333221 1111 111245688899997432 111111 11222334
Q ss_pred EEEEeeCCCeEEEEEccC
Q 013436 412 YIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 412 ~l~tg~~dg~v~iwd~~~ 429 (443)
.|+|=+.|..+++|-+.+
T Consensus 323 QLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 323 QLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eEEEeecCCceEeeeccH
Confidence 699999999999999864
No 262
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.31 E-value=3.6e-09 Score=94.80 Aligned_cols=219 Identities=14% Similarity=0.095 Sum_probs=142.9
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC------
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP------ 191 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg------ 191 (443)
..+..-.-++..++|||.|.+|++.... .|.+|.-.....+... .|. .|..+.|||++++|.+-+..+
T Consensus 26 ~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~----~~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~ 99 (561)
T COG5354 26 TRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF----RHP-DVKYLDFSPNEKYLVTWSREPIIEPEI 99 (561)
T ss_pred ccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee----ecC-CceecccCcccceeeeeccCCccChhh
Confidence 3444456789999999999999988664 4999987765433221 122 389999999999999976544
Q ss_pred ---------eEEEEECCCCceeccccceeccc----CceeeccCC-------------------CC------ceecEEEE
Q 013436 192 ---------IVHIVDVGSGTMESLANVTEIHD----GLDFSAADD-------------------GG------YSFGIFSL 233 (443)
Q Consensus 192 ---------~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------------~~------~~~~i~~l 233 (443)
.+.+||+.++.+...+....... .+.++.... .. ....|...
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dF 179 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDF 179 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeE
Confidence 49999999988765443332220 011111110 00 12467888
Q ss_pred EEeCCC--CEEEE-----EecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee-----------CCCeEE
Q 013436 234 KFSTDG--RELVA-----GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-----------DDNLCK 295 (443)
Q Consensus 234 ~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-----------~d~~i~ 295 (443)
.|+|.+ ..|+. ....+.+++|.+..++.+.+..-....-..+.|+ ..|+++++-- ....++
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEE
Confidence 899853 34443 3557889999998776655443333344567886 6666554321 124678
Q ss_pred EEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe--CCCCEEEEeCCCC
Q 013436 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKM 348 (443)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~ 348 (443)
|++++ ...+.......++|...+|.|.++.+++.+ .+..+.++|++..
T Consensus 259 l~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 259 LLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EEeec-----ccccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 88885 333333335678999999999988777554 5788999999874
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=1.7e-08 Score=87.14 Aligned_cols=222 Identities=18% Similarity=0.214 Sum_probs=142.7
Q ss_pred ccCCCCceEEEEECCCCCEEEEEECC---CeEEEEECCC--CeEEEEeeecCCccceEEEEEECCCCCeEEEEEC-CCeE
Q 013436 120 VDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIV 193 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~g~~d---~~i~iwd~~~--~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg~i 193 (443)
+-...+.++-++|+|++++|.++-.+ |.|..|.++. | .+...........+.+.+++++++++++++.. .|.|
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G-~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG-RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC-eEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceE
Confidence 34557788999999999999987654 6788887765 4 22222112222223478999999999999875 4689
Q ss_pred EEEECCC-CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECCCCeeeEEee---cc
Q 013436 194 HIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRIL---AH 268 (443)
Q Consensus 194 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~---~~ 268 (443)
.++.++. |.......... +.+.. ++ ....+..+....+.|++++|++..- -..|.+|++..++....-. ..
T Consensus 114 ~v~p~~~dG~l~~~v~~~~-h~g~~--p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVK-HTGSG--PH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred EEEEcccCCccccceeeee-cCCCC--CC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 9999966 43332222111 11100 00 0001112778899999999888753 2459999999776432211 34
Q ss_pred CCCeEEEEEeCCCCCEEEEee-CCCeEEEEecccCCCCCceeeeecC------CCCCeEEEEECCCCCEEEEEeC-CCCE
Q 013436 269 TSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMG------HLEGITFIDSRGDGRYLISNGK-DQAI 340 (443)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~~~-dg~i 340 (443)
....+.|.|+ +++++.++.+ -+++|.+|........-+.++.+.. -......|..++||++|.++.. ...|
T Consensus 190 G~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 190 GAGPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred CCCcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 5567899998 8888877655 6889999998743112222222211 1345678899999999988765 4478
Q ss_pred EEEeCCC
Q 013436 341 KLWDIRK 347 (443)
Q Consensus 341 ~iwd~~~ 347 (443)
-+|.+..
T Consensus 269 ~~f~V~~ 275 (346)
T COG2706 269 AVFSVDP 275 (346)
T ss_pred EEEEEcC
Confidence 8887765
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.29 E-value=3.2e-09 Score=109.98 Aligned_cols=269 Identities=12% Similarity=0.124 Sum_probs=155.5
Q ss_pred EEEEECCC-CCEEEEEECCCeEEEEECCCCeEEEEeeecC-----------CccceEEEEEECCCCCeEEEEE-CCCeEE
Q 013436 128 YVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAK-----------SLRWTVTDTSLSPDQRHLVYAS-MSPIVH 194 (443)
Q Consensus 128 ~~~~~s~~-~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~~v~~i~~s~~~~~l~~~~-~dg~i~ 194 (443)
..++++++ +.++++-..++.|++||.... .+....... ..-.....+++.++++.|+++. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 567777777889999998754 332221100 0112357899999888766655 456899
Q ss_pred EEECCCCceeccccceecccCceeeccCC--CCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEeecc---
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADD--GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAH--- 268 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--- 268 (443)
++|+.++....+.... ..+..+..... ...-..-..++++| ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V~tlag~G--~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNETVRTLAGNG--TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEecCCCEEEEEeccC--cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9998876543322110 00000000000 00001235789999 5666667777899999999877542 22111
Q ss_pred ------------CCCeEEEEEeCCCCC-EEEEeeCCCeEEEEecccCCCCCceee-------------eecC--------
Q 013436 269 ------------TSDVNTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAG-------------VLMG-------- 314 (443)
Q Consensus 269 ------------~~~v~~i~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------~~~~-------- 314 (443)
-.....|+++ ++++ ++++.+.++.|++||+.. +.... .+..
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~t----g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKT----GGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred ccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCC----CcEEEEEecccccCcccccccCCCCchhhh
Confidence 1234678998 5555 666667789999999873 22110 0000
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEecccee
Q 013436 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (443)
Q Consensus 315 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (443)
.......++++++|+++++-..++.|++||..+.........+... + .+ +.. ..+. .
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G---------~-~d--------G~~---~~a~--l 858 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG---------F-KD--------GKA---LKAQ--L 858 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC---------C-CC--------Ccc---cccc--c
Confidence 0112357899999999899989999999999764321100000000 0 00 000 0000 0
Q ss_pred eeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhh
Q 013436 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 395 ~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~ 432 (443)
..... .+++++|+++++-+.+++|++||+.+++.
T Consensus 859 ~~P~G----Iavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 859 SEPAG----LALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCceE----EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 01112 23556899989989999999999998875
No 265
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.27 E-value=1.7e-08 Score=92.75 Aligned_cols=210 Identities=15% Similarity=0.215 Sum_probs=136.0
Q ss_pred CCceEEEEECCCCCEEEEEEC-CCeEEEEECCCCeEEEEeee-c----------CCccceEEEEEECCCCCeEEEEEC-C
Q 013436 124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDIL-A----------KSLRWTVTDTSLSPDQRHLVYASM-S 190 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~-d~~i~iwd~~~~~~~~~~~~-~----------~~~~~~v~~i~~s~~~~~l~~~~~-d 190 (443)
......++++|++++|+++.. +|.|.++++.....+..... . ........++.|+|+++++++... .
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 445567999999999998874 88999999987423332211 1 122334788999999998888654 3
Q ss_pred CeEEEEECCCCc--eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECC--CCe--eeE
Q 013436 191 PIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE--ANK--LSL 263 (443)
Q Consensus 191 g~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~--~~~--~~~ 263 (443)
..|.+|++.... +.....+. .. ....-..+.|+|+++++++..+ ++.|.++++. ++. .+.
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~-~~------------~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIK-VP------------PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEE-CS------------TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEEeCCCceEEEeeccc-cc------------cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 489999997765 32211111 11 1125778999999998776654 6789999987 443 222
Q ss_pred Eeecc------CCCeEEEEEeCCCCCEEEEee-CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 013436 264 RILAH------TSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 264 ~~~~~------~~~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 336 (443)
.+... ......|.++ +++++|+++. .++.|.+|++.......+.+..+.........++++|+|++|+++..
T Consensus 233 ~~~~~~~~~~~~~~~~~i~is-pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAIS-PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EeeeccccccccCCceeEEEe-cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 22211 1257789998 7788777655 56789999995321122344444433445789999999999988774
Q ss_pred -CCCEEEEeCCC
Q 013436 337 -DQAIKLWDIRK 347 (443)
Q Consensus 337 -dg~i~iwd~~~ 347 (443)
++.|.+|++..
T Consensus 312 ~s~~v~vf~~d~ 323 (345)
T PF10282_consen 312 DSNTVSVFDIDP 323 (345)
T ss_dssp TTTEEEEEEEET
T ss_pred CCCeEEEEEEeC
Confidence 67899998753
No 266
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.24 E-value=2.6e-08 Score=83.56 Aligned_cols=212 Identities=19% Similarity=0.188 Sum_probs=135.6
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCC--eEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccc
Q 013436 130 SQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (443)
Q Consensus 130 ~~~s~~~~~l~~g~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 207 (443)
++.+.||+.||+- .|..|.|-...+. ..+.+.....+..-.-..++||||+.+||.+...|+|++||+....+..+.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 5678899988876 6788888876654 223333334443344678999999999999999999999999875544322
Q ss_pred cceecccCceeeccCCCCceecEEEEEEeCC------CCEEEEEecCCeEEEEECCCC-----eeeEEee---ccCCCeE
Q 013436 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTD------GRELVAGSSDDCIYVYDLEAN-----KLSLRIL---AHTSDVN 273 (443)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~------~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~---~~~~~v~ 273 (443)
..... .......|..+.|.+- ...|++-..+|.++-|-+..+ +....+. .+...|+
T Consensus 82 p~~~~----------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~ 151 (282)
T PF15492_consen 82 PAMSF----------PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN 151 (282)
T ss_pred ccccc----------CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence 21110 1123347777877652 225666677888877765321 2223332 2467899
Q ss_pred EEEEeCCCCCEEEEeeC-CC----------eEEEEecccCCCCCce-----------------ee-----ee---cCCCC
Q 013436 274 TVCFGDESGHLIYSGSD-DN----------LCKVWDRRCLNVKGKP-----------------AG-----VL---MGHLE 317 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~-d~----------~i~iwd~~~~~~~~~~-----------------~~-----~~---~~~~~ 317 (443)
++.++ +..++|++|+. .. -+..|.+-...+-.++ .+ .+ .....
T Consensus 152 ~~vy~-p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d 230 (282)
T PF15492_consen 152 SAVYH-PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQD 230 (282)
T ss_pred EEEEc-CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCC
Confidence 99997 55566666652 21 2555654321110000 00 00 12356
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccc
Q 013436 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 318 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (443)
.|..+..+|||..||+...+|.|.+|++.+.+....
T Consensus 231 ~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 231 GIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred ceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 789999999999999999999999999998665443
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=6e-09 Score=94.36 Aligned_cols=219 Identities=12% Similarity=0.135 Sum_probs=122.0
Q ss_pred CceEEEEECCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeE
Q 013436 125 SRAYVSQFSADGSLFVAGFQ-----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 193 (443)
-.|.-+.|||+.+||+|-+. ...++|||+.+|...............-.-+.||.|++++|-...+ .|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-si 328 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SI 328 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eE
Confidence 35888999999999998653 2569999999996655444322222122337899999999977664 58
Q ss_pred EEEECCCCceecccccee-cccCceeeccCC---------CC-------------------ceecEE--EEEEeCCCCEE
Q 013436 194 HIVDVGSGTMESLANVTE-IHDGLDFSAADD---------GG-------------------YSFGIF--SLKFSTDGREL 242 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~-------------------~~~~i~--~l~~~~~~~~l 242 (443)
.||+..+-.+.....+.- ...+..+++... .. .-..|. .+.|-.+|.+|
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 888876543322211110 000000000000 00 000111 22333444444
Q ss_pred EEEec-------CC---eEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee-C--CCeEEEEecccCCCCCcee
Q 013436 243 VAGSS-------DD---CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-D--DNLCKVWDRRCLNVKGKPA 309 (443)
Q Consensus 243 ~~~~~-------dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~--d~~i~iwd~~~~~~~~~~~ 309 (443)
+.--. .| .+-|+.++........-.-...|...+|- |.|+.+++-+ . ..++.+|.+.........+
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWE-P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWE-PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeec-cCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 43211 01 13333333332222222345677888996 6666555543 2 3478899887433344445
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEEe---CCCCEEEEeCCC
Q 013436 310 GVLMGHLEGITFIDSRGDGRYLISNG---KDQAIKLWDIRK 347 (443)
Q Consensus 310 ~~~~~~~~~v~~~~~~~~~~~l~s~~---~dg~i~iwd~~~ 347 (443)
..+.. ...+.+.|+|.|++++.+. ..|.+.++|+..
T Consensus 488 k~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 488 KELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred hhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 44443 5668899999999988654 468899999874
No 268
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.20 E-value=3.2e-10 Score=98.58 Aligned_cols=164 Identities=20% Similarity=0.221 Sum_probs=111.7
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCe---EEEEECCCCc
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---VHIVDVGSGT 202 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~---i~iwd~~~~~ 202 (443)
.+..+..++.+++||++..+....++++.......+...........+++.|-.+......+..-|. +.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3455567788999999988888777777654221111111122223445555555555555544444 4444444333
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee-ccCCCeEEEEEeCCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDES 281 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~ 281 (443)
.... -||-.-+++++|+||++.|+++..|..|++-.....-.+..+. +|+..|..++.- +
T Consensus 144 ~~~~-----------------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~ 204 (390)
T KOG3914|consen 144 CEPI-----------------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--D 204 (390)
T ss_pred cchh-----------------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--c
Confidence 3222 2577789999999999999999999999998876655555544 799999999995 4
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCceeeee
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 312 (443)
+..|++++.|++|++||++ +++.+..+
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~----sgk~L~t~ 231 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDIT----SGKLLDTC 231 (390)
T ss_pred CceeeecCCCCcEEEEecc----cCCccccc
Confidence 5668999999999999999 66666554
No 269
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=5.7e-11 Score=101.02 Aligned_cols=157 Identities=23% Similarity=0.319 Sum_probs=122.0
Q ss_pred EEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC-CCceeeeecCCCCCeEE
Q 013436 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-KGKPAGVLMGHLEGITF 321 (443)
Q Consensus 243 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~v~~ 321 (443)
++.+.+-.|-+-|++++.. +.+. ..+.|.++.|. ..++++..|+.+|.|..+|+|.... ++.+...+. |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 3344466688999988853 3343 67889999997 7889999999999999999996421 344555554 8889999
Q ss_pred EEECC-CCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEE
Q 013436 322 IDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (443)
Q Consensus 322 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (443)
+..-. ++++|.+++.+|.|++||+|..++ +..+..|.||......+..
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-------------------------------~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKC-------------------------------KKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhc-------------------------------ccceeeeeccccccccccc
Confidence 88665 788999999999999999998433 3458999999876655554
Q ss_pred EecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhHH
Q 013436 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQS 438 (443)
Q Consensus 401 ~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~~ 438 (443)
...+ ....++++|.|-..+||.+.+|.++.++..
T Consensus 353 ~v~~----eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 353 HVKE----EEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cccc----ccceEEEccCeeEEEEEecccCceeeccCC
Confidence 4433 677899999999999999999999877653
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.19 E-value=8.5e-09 Score=85.08 Aligned_cols=196 Identities=13% Similarity=0.044 Sum_probs=130.6
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCeEEEEECCCCceeccccceeccc
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (443)
-.+||.|+..|...+|...+.+.... ....+...|+-+.=..+ ...+..++.|.++++.++..+..........
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--- 158 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--- 158 (344)
T ss_pred ccEEEeccccceeeeecccCccccee--eecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc---
Confidence 35799999999999999986533222 12222222222211111 2346678889999999887665433222111
Q ss_pred CceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe--eeE-EeeccCCCeEEEEEeCCCCCEEEEeeCC
Q 013436 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSL-RILAHTSDVNTVCFGDESGHLIYSGSDD 291 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~d 291 (443)
-.+.++++++|++++++.+....|..|.+.... .+. ......+.-.+..|+ .....+|++..|
T Consensus 159 -------------~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 159 -------------LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS-ENDLQFAVVFQD 224 (344)
T ss_pred -------------cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec-cCcceEEEEecC
Confidence 037889999999999999999999999886542 222 222344555778887 778899999999
Q ss_pred CeEEEEecccCCCCCce-eeeecCCCCCeEEEEECCCCC--EEEEEeCCCCEEEEeCCCCCC
Q 013436 292 NLCKVWDRRCLNVKGKP-AGVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 292 ~~i~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~ 350 (443)
|++.|||+|........ ..+-..|.+.+..+.|++.|. +|+..-.-+.+.+-|+|+...
T Consensus 225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 99999999954322111 122335889999999998653 444444457899999999553
No 271
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=1.3e-09 Score=92.85 Aligned_cols=213 Identities=17% Similarity=0.252 Sum_probs=144.3
Q ss_pred CCCceEEEEECCCCC--EEEEEECCCeEEEEECCCCeE---------------------------------EEEeeecCC
Q 013436 123 TTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWK---------------------------------IQKDILAKS 167 (443)
Q Consensus 123 h~~~v~~~~~s~~~~--~l~~g~~d~~i~iwd~~~~~~---------------------------------~~~~~~~~~ 167 (443)
-...|..+.|.+++. .++..+.|.+|++|.+..... .........
T Consensus 83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa 162 (433)
T KOG1354|consen 83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA 162 (433)
T ss_pred hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence 356789999998774 566777899999998754210 011223457
Q ss_pred ccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEe
Q 013436 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGS 246 (443)
Q Consensus 168 ~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~ 246 (443)
|..-|.+|.++.|+..++++ .|=.|.+|+++--.. .+++.+.. +.....-..-|++..|+|. ...|+-.+
T Consensus 163 HtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~--sFnIVDIK------P~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 163 HTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQ--SFNIVDIK------PANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred ceeEeeeeeecCccceEeec-cceeeeeccccccCC--ceeEEEcc------ccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 88889999999999988875 455799999863221 11111111 0011112235888899994 46777888
Q ss_pred cCCeEEEEECCCCeeeE----Ee------------eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceee
Q 013436 247 SDDCIYVYDLEANKLSL----RI------------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 310 (443)
Q Consensus 247 ~dg~i~iwd~~~~~~~~----~~------------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 310 (443)
..|+|++-|++...... .+ ..--..|..+.|+ .+|+++++-.. -+|++||+.. ..+++.
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs-~sGryilsRDy-ltvk~wD~nm---e~~pv~ 308 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFS-HSGRYILSRDY-LTVKLWDLNM---EAKPVE 308 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEc-cCCcEEEEecc-ceeEEEeccc---cCCcce
Confidence 89999999998542111 11 1123468889998 88999987543 5899999952 556666
Q ss_pred eecCCCC------------Ce---EEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 311 VLMGHLE------------GI---TFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 311 ~~~~~~~------------~v---~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
.+.-|.. .| ..++|+.++.+++||+..+.++++++..+.
T Consensus 309 t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 309 TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 6665531 12 357899999999999999999999966544
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.17 E-value=3.5e-10 Score=98.34 Aligned_cols=161 Identities=15% Similarity=0.202 Sum_probs=108.2
Q ss_pred cEEEEEEeCCCCEEEEEecCCeEEEEECCCCee----eEEeeccCCCeEEEEEeCCCCCEEEEee---CCCeEEEEeccc
Q 013436 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL----SLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRC 301 (443)
Q Consensus 229 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~iwd~~~ 301 (443)
....+..+++++++|++..+....+++...... .... .-...-+++.+. ........+. +...+.+|...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~-~~~~sv~v~dkagD~~~~di~s~~- 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFI-REDTSVLVADKAGDVYSFDILSAD- 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeee-eccceEEEEeecCCceeeeeeccc-
Confidence 455567788999999998888877877765432 1121 222333455554 3333333333 33445555543
Q ss_pred CCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCC
Q 013436 302 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 381 (443)
Q Consensus 302 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (443)
. .+...+.||...++.++|+||+++++++..|+.|+|-.......
T Consensus 141 ---~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~------------------------------- 185 (390)
T KOG3914|consen 141 ---S-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV------------------------------- 185 (390)
T ss_pred ---c-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-------------------------------
Confidence 2 34445668999999999999999999999999999987766322
Q ss_pred CeeEEEE-eccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhH
Q 013436 382 DQSVATY-KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 382 ~~~~~~~-~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~ 437 (443)
+..| -||..-+.-+.+. ++..|++||.|++|++||+.+|+.+.++.
T Consensus 186 ---IesfclGH~eFVS~isl~-------~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 186 ---IESFCLGHKEFVSTISLT-------DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ---hhhhccccHhheeeeeec-------cCceeeecCCCCcEEEEecccCCcccccc
Confidence 2222 3566544444332 57779999999999999999999887653
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=3.3e-08 Score=100.72 Aligned_cols=218 Identities=18% Similarity=0.196 Sum_probs=141.4
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEE----ECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIY----DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iw----d~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
...+.|.++.|-++...++.+..+|.|.+. +..+. .+.. .......|.+++||||+..|+.++.++++.+..
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~---VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEI---VGSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEE---EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 446789999999999999999999999999 55543 1221 222334599999999999999999999887754
Q ss_pred CCCCceeccccce-------------ecccCceeec---------------c-CCCC---ceecEEEEEEeCCCCEEEEE
Q 013436 198 VGSGTMESLANVT-------------EIHDGLDFSA---------------A-DDGG---YSFGIFSLKFSTDGRELVAG 245 (443)
Q Consensus 198 ~~~~~~~~~~~~~-------------~~~~~~~~~~---------------~-~~~~---~~~~i~~l~~~~~~~~l~~~ 245 (443)
-. .+.+....+. -..+...|.. . .+.+ +...-..++|-.||.++|+.
T Consensus 149 ~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 RD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred cc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 21 1111100000 0000000000 0 0001 23355678999999999998
Q ss_pred ec---C---CeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeC---CCeEEEEecccCCCCCceeeeecCCC
Q 013436 246 SS---D---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHL 316 (443)
Q Consensus 246 ~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~ 316 (443)
+. . ..|+||+-+ |.....-..-.+--.+++|- |.|++||+.-. ...|.+|...... -++....+....
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLr-hgeF~l~~~~~~ 304 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLR-HGEFTLRFDPEE 304 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcE-eeeEecCCCCCC
Confidence 75 2 469999954 65444443334445678996 89999988764 3567788763221 222222222445
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
..|..+.|++|+..||....|. |.+|-..+.
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 6899999999999999977655 999998873
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.7e-10 Score=104.04 Aligned_cols=210 Identities=11% Similarity=0.155 Sum_probs=150.3
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCC-eE---EEEeeecCCccceEEEEEECCCCCeEEEEECCCeE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~-~~---~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 193 (443)
..+.||...|..++--.+.+-+++++.|++|++|.+... .. .........|+.+|.++.|-.+-+++++ .||-|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 355799999999988778888999999999999998642 11 1233456789999999999888877765 57889
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEE-EecCCeEEEEECCCCeeeEEee-----c
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRIL-----A 267 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~-----~ 267 (443)
++||.--++..........+ +..+.|.++.-- +...+.. ++...+|+++|.+.......++ +
T Consensus 807 HlWDPFigr~Laq~~dapk~-----------~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKE-----------GAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred eeecccccchhHhhhcCccc-----------CCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 99998776654322211111 111234443211 3334444 4778899999999987666655 3
Q ss_pred cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEE-EeCC
Q 013436 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL-WDIR 346 (443)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i-wd~~ 346 (443)
....+.++++. +.|+.++.+-.+|.|.+.|.| +++.+..+....-....++ .|..+.|+....|.++.+ |..-
T Consensus 875 Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR----~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 875 PNALTRAIAVA-DKGNKLAAALSNGCIAILDAR----NGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred CchheeEEEec-cCcchhhHHhcCCcEEEEecC----CCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhc
Confidence 34568899996 889999999999999999999 8888887765554554554 355667888888888888 8655
Q ss_pred C
Q 013436 347 K 347 (443)
Q Consensus 347 ~ 347 (443)
.
T Consensus 949 d 949 (1034)
T KOG4190|consen 949 D 949 (1034)
T ss_pred C
Confidence 4
No 275
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.15 E-value=1.6e-09 Score=88.92 Aligned_cols=202 Identities=19% Similarity=0.284 Sum_probs=121.1
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEee---------ecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI---------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~---------~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
|+.+.++.+ ..|+++..++.+.....-++.+..... ....+..+-.+-+.+-.+..++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555666643 346666666666555544432221110 0111111111112233456799999999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe-----cCCeEEEEECCCCeeeEEeeccCCCe
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-----SDDCIYVYDLEANKLSLRILAHTSDV 272 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v 272 (443)
.+. ......++...+. .-.+.+....++.+.++. .-+..+.|+++..+....-......|
T Consensus 118 ~~~-~~~~~~~i~~~~~--------------~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v 182 (319)
T KOG4714|consen 118 TDK-DLALMSRIPSIHS--------------GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAV 182 (319)
T ss_pred chH-HHhhhhhcccccc--------------cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccc
Confidence 775 2111111111111 111222222344444332 12346677766544322222223349
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC-CCCEEEEEeCCCCEEEEeCCC
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.+++-+|...+++++|+.||.+.+||.|.. ..+...+..|+.+|..+.|+| ++..|++++.||.+..||..+
T Consensus 183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~---~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 183 TALCSHPAQQHLVCCGTDDGIVGLWDARNV---AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhCCcccccEEEEecCCCeEEEEEcccc---cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999888889999999999999999943 345566788999999999999 678899999999999999885
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=3e-09 Score=99.07 Aligned_cols=207 Identities=9% Similarity=0.075 Sum_probs=146.9
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCe------------EEEEeeecCCccceEEEEEECCCCCeEEEEECCC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg 191 (443)
.....|++|+....++|+|+.||.++|..+.+.. .+.....+.+|...|..+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3467899999999999999999999999886531 1122234678999999999999999999999999
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE-EeeccCC
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTS 270 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~ 270 (443)
.|.+|-+-.+......... ..++-|.+++|+.||..++....||.|.+=.+..++.-. .++ ..
T Consensus 94 lIiVWmlykgsW~EEMiNn--------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~ 157 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINN--------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQ 157 (1189)
T ss_pred eEEEEeeecccHHHHHhhC--------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hh
Confidence 9999998877643222111 234479999999999999999999999888776554321 122 22
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC---CCceee----eecCCCCCeEEEEE--------CCCCCEEEEEe
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---KGKPAG----VLMGHLEGITFIDS--------RGDGRYLISNG 335 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~----~~~~~~~~v~~~~~--------~~~~~~l~s~~ 335 (443)
....+.|+ ++...++.+-.+|.+.+||...... ...+.- .+......|..+.| .|+...|+.+-
T Consensus 158 ~l~hv~ws-~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 158 LLAHVLWS-EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eccceeec-ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 34578897 7777777888889999999752110 011111 11112223555555 35778899999
Q ss_pred CCCCEEEEeCCC
Q 013436 336 KDQAIKLWDIRK 347 (443)
Q Consensus 336 ~dg~i~iwd~~~ 347 (443)
.+|.+.|-.-.+
T Consensus 237 ~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 237 ANGRMQIMRSEN 248 (1189)
T ss_pred cCceehhhhhcC
Confidence 999988865444
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.9e-08 Score=91.36 Aligned_cols=198 Identities=17% Similarity=0.214 Sum_probs=131.2
Q ss_pred CCCceEEEEECCCC--CEEEE-----EECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE-EEEE--CC--
Q 013436 123 TTSRAYVSQFSADG--SLFVA-----GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYAS--MS-- 190 (443)
Q Consensus 123 h~~~v~~~~~s~~~--~~l~~-----g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~--~d-- 190 (443)
|...|..+.+||.+ ..+|+ ++.-+.|+||.......-.......-....=..+.|++-|.-| +.++ -|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 57789999999874 44554 3344679999876321111100001111123357888877633 3222 22
Q ss_pred -------CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEE--ecCCeEEEEECCCCee
Q 013436 191 -------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG--SSDDCIYVYDLEANKL 261 (443)
Q Consensus 191 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~--~~dg~i~iwd~~~~~~ 261 (443)
.++++.++++........ ..++|.++.|+|+++.++++ -.-..+.|||++. .+
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~-----------------k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~ 305 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLL-----------------KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KP 305 (566)
T ss_pred CccccccceEEEEEecCceEEEecC-----------------CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CE
Confidence 367888777333221111 23389999999999877664 4567899999864 34
Q ss_pred eEEeeccCCCeEEEEEeCCCCCEEEEeeCC---CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC--
Q 013436 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-- 336 (443)
Q Consensus 262 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-- 336 (443)
+..+ ..++-+++-|+ +.|++|+.++-+ |.+-|||+. +.+.+..+... .-+-+.|+|||++|+|+..
T Consensus 306 v~df--~egpRN~~~fn-p~g~ii~lAGFGNL~G~mEvwDv~----n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 306 VFDF--PEGPRNTAFFN-PHGNIILLAGFGNLPGDMEVWDVP----NRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred eEeC--CCCCccceEEC-CCCCEEEEeecCCCCCceEEEecc----chhhccccccC--CceEEEEcCCCcEEEEEeccc
Confidence 4444 46677899998 888988887754 789999998 77777777654 3456789999999998874
Q ss_pred ----CCCEEEEeCCC
Q 013436 337 ----DQAIKLWDIRK 347 (443)
Q Consensus 337 ----dg~i~iwd~~~ 347 (443)
|+.++||+...
T Consensus 377 RlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYTG 391 (566)
T ss_pred cEEecCCeEEEEecC
Confidence 78899999875
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=4.1e-08 Score=91.90 Aligned_cols=191 Identities=13% Similarity=0.096 Sum_probs=119.5
Q ss_pred ceEEEEECCCCCE-EEEEEC---CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CC--CeEEEEEC
Q 013436 126 RAYVSQFSADGSL-FVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MS--PIVHIVDV 198 (443)
Q Consensus 126 ~v~~~~~s~~~~~-l~~g~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~d--g~i~iwd~ 198 (443)
.+....|+|||+. ++..+. +..|.++|+.+++.... .. ..+......|+|||+.|+... .+ ..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-AS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-ec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 7788999999984 654433 34699999988844332 11 233456678999998777543 33 47888898
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-C--eEEEEECCCCeeeEEeeccCCCeEEE
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRILAHTSDVNTV 275 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i 275 (443)
.++....+..... ......|+|||+.|+..+.. + .|+++|+.+++..+.... .. ...
T Consensus 265 ~~g~~~~LT~~~~-----------------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~ 324 (419)
T PRK04043 265 NTKTLTQITNYPG-----------------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNS 324 (419)
T ss_pred CCCcEEEcccCCC-----------------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCc
Confidence 8876544332211 12235799999988777643 2 688999988775333221 11 124
Q ss_pred EEeCCCCCEEEEeeCC---------CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-CC--EEEE
Q 013436 276 CFGDESGHLIYSGSDD---------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-QA--IKLW 343 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~--i~iw 343 (443)
.|+ ++++.|+..+.. ..|.+.|+. .+.. ..+... .......|+|||+.|+....+ +. +.+.
T Consensus 325 ~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~----~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 325 SVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTN----SDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred eEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECC----CCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 897 777777665543 367777876 3332 334332 233358899999988765543 33 5555
Q ss_pred eCCC
Q 013436 344 DIRK 347 (443)
Q Consensus 344 d~~~ 347 (443)
++..
T Consensus 398 ~l~g 401 (419)
T PRK04043 398 RLNY 401 (419)
T ss_pred ecCC
Confidence 5544
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=7e-09 Score=96.70 Aligned_cols=198 Identities=10% Similarity=0.070 Sum_probs=144.6
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
.+.++||...|..+.|+.+.+.|-+...+|.|.||-+-.|...... ........|.+++|+.||..++..-.||.|.+=
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence 5678999999999999999999999999999999999887443332 233445579999999999999999999999887
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe-------eeEE----e
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-------LSLR----I 265 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~----~ 265 (443)
.++.++..... +... -...+.|++|.+.++.+-.+|.+.+||.+..- +... +
T Consensus 143 svdGNRIwgKe-Lkg~----------------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~ 205 (1189)
T KOG2041|consen 143 SVDGNRIWGKE-LKGQ----------------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF 205 (1189)
T ss_pred eeccceecchh-cchh----------------eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee
Confidence 77665432111 1100 24468999999999999999999999976431 1111 1
Q ss_pred eccCCCeEEEEEe-------CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q 013436 266 LAHTSDVNTVCFG-------DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (443)
Q Consensus 266 ~~~~~~v~~i~~~-------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 337 (443)
......|..+.|. ||+...|+++-.+|.+.+..-.. ...++-.- ..-.+....|+++|..|+.++.+
T Consensus 206 s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN---D~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 206 SNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN---DPEPVVVD--TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred cCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC---CCCCeEEe--cccEeecceecCCCcEEEEccCc
Confidence 1223346666664 46677899999999998865431 22333222 23578899999999999999865
No 280
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=1.3e-07 Score=81.80 Aligned_cols=206 Identities=14% Similarity=0.200 Sum_probs=139.3
Q ss_pred EEEEECCCCCEEEEEEC-CCeEEEEECCCCeEEEEeeecCCccce----------EEEEEECCCCCeEEEEEC-CCeEEE
Q 013436 128 YVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWT----------VTDTSLSPDQRHLVYASM-SPIVHI 195 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~----------v~~i~~s~~~~~l~~~~~-dg~i~i 195 (443)
..++++++|++++++.. .|.|.++-+...-.+........|.+. +....+.|++++|++... --.|.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 88999999999998865 578999998663233333223333333 788999999999998763 236999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECCCC-eeeEEee-------
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEAN-KLSLRIL------- 266 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~------- 266 (443)
|++..+.........- . ...+-+.|.|+|++++..+.++ +++|.+|..... ..+..+.
T Consensus 172 y~~~dg~L~~~~~~~v-~------------~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 172 YDLDDGKLTPADPAEV-K------------PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred EEcccCcccccccccc-C------------CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 9999776543332221 1 1125678999999998877665 789999988763 2222222
Q ss_pred --ccCCCeEEEEEeCCCCCEEEEeeC-CCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-CCEEE
Q 013436 267 --AHTSDVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-QAIKL 342 (443)
Q Consensus 267 --~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~i 342 (443)
.......+|..+ ++|++|+++.. ...|.+|.+......-..+.....+...-..+.+++++++|+++..+ ..|.+
T Consensus 239 dF~g~~~~aaIhis-~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~v 317 (346)
T COG2706 239 DFTGTNWAAAIHIS-PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITV 317 (346)
T ss_pred ccCCCCceeEEEEC-CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEE
Confidence 123456778887 89999988753 23788888774321122233333344446788999999999988874 56999
Q ss_pred EeCCC
Q 013436 343 WDIRK 347 (443)
Q Consensus 343 wd~~~ 347 (443)
|.+..
T Consensus 318 f~~d~ 322 (346)
T COG2706 318 FERDK 322 (346)
T ss_pred EEEcC
Confidence 97765
No 281
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.3e-08 Score=92.28 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=92.3
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC-----------Ce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----------PI 192 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----------g~ 192 (443)
+-.-+-+.|||.|.||++-..-| |.+|--.+-..++. -.|.+ |.-+.|||..++|++-+.. ..
T Consensus 210 nWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R----F~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 210 NWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR----FYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred cceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHh----ccCCC-ceeeecCCccceEEEecCCccccCcccCCCce
Confidence 44457889999999999987755 89996544322222 23444 8889999999999986531 47
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCe
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 272 (443)
+.|||+.+|.....+....... . .-.-+.||.|++++|.-..+ .|.||+..+-.++..-.-....|
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~-----------~--~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gI 349 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPY-----------L--KWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGI 349 (698)
T ss_pred EEEEEccccchhcceeccCCCc-----------c--ccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccc
Confidence 9999999998766555421110 0 11236899999999887765 48888876543332222233445
Q ss_pred EEEEEeCCCCCEEE
Q 013436 273 NTVCFGDESGHLIY 286 (443)
Q Consensus 273 ~~i~~~~~~~~~l~ 286 (443)
....|+ |.+++||
T Consensus 350 r~Fsws-P~~~llA 362 (698)
T KOG2314|consen 350 RDFSWS-PTSNLLA 362 (698)
T ss_pred cCcccC-CCcceEE
Confidence 555665 3344433
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=1e-07 Score=89.28 Aligned_cols=171 Identities=17% Similarity=0.159 Sum_probs=104.2
Q ss_pred CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCe-EEEEECC---CeEEEEECCCCceeccccceecccCceeecc
Q 013436 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH-LVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~-l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (443)
..|.+-|.+... ... ... . . ......|+|||+. ++..+.+ ..|+++|+.+++...+.....
T Consensus 169 ~~l~~~d~dg~~-~~~-~~~-~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g---------- 233 (419)
T PRK04043 169 SNIVLADYTLTY-QKV-IVK-G-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG---------- 233 (419)
T ss_pred ceEEEECCCCCc-eeE-Ecc-C-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC----------
Confidence 356665665432 222 112 2 2 5778999999985 6655443 479999998887655543211
Q ss_pred CCCCceecEEEEEEeCCCCEEEEEec---CCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee-CCC--eEE
Q 013436 222 DDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCK 295 (443)
Q Consensus 222 ~~~~~~~~i~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~--~i~ 295 (443)
......|+|||+.++.... +..|+++|+.+++. ..+..+........|+ ++|+.|+..+ ..+ .|.
T Consensus 234 -------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy 304 (419)
T PRK04043 234 -------MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIF 304 (419)
T ss_pred -------cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEEC-CCCCEEEEEECCCCCceEE
Confidence 3455789999987765432 35699999988763 4454444434556898 6777666555 333 577
Q ss_pred EEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC---------CCEEEEeCCC
Q 013436 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---------QAIKLWDIRK 347 (443)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~ 347 (443)
+.|+. .++...... ... ....|+|+|+.|+..+.. ..|.+.|+..
T Consensus 305 ~~dl~----~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~ 358 (419)
T PRK04043 305 MKKLN----SGSVEQVVF-HGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS 358 (419)
T ss_pred EEECC----CCCeEeCcc-CCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence 77775 444322222 111 124899999998866643 2466667655
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=5.7e-10 Score=104.06 Aligned_cols=225 Identities=20% Similarity=0.271 Sum_probs=157.8
Q ss_pred eecccccCCCccccC-CCCceEEEEECCCC--CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC-Ce
Q 013436 108 LSRYLPVNGPWPVDQ-TTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RH 183 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~--~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~ 183 (443)
+.-..|..+++-+.. -.-.|-.++|+|.. .+-++......-.+|++.....-.....+.+|...|+++.|+|.. ..
T Consensus 50 ~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdV 129 (1081)
T KOG0309|consen 50 IDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDV 129 (1081)
T ss_pred EeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcc
Confidence 333445444443322 23347778898864 444455555667889987654444445678999999999999975 57
Q ss_pred EEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-eee
Q 013436 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLS 262 (443)
Q Consensus 184 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~ 262 (443)
+++++.|-.++.||+++....... ... ...+...++|+-....+.+.+....|.+||++.+ .++
T Consensus 130 latcsvdt~vh~wd~rSp~~p~ys-~~~--------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl 194 (1081)
T KOG0309|consen 130 LATCSVDTYVHAWDMRSPHRPFYS-TSS--------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL 194 (1081)
T ss_pred eeeccccccceeeeccCCCcceee-eec--------------ccccCceeeecccCcchhhhccCCceEEEeccCCCcce
Confidence 889999999999999876431111 000 1125667899875545556666778999999876 566
Q ss_pred EEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCC---------------------------------------
Q 013436 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--------------------------------------- 303 (443)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------------------------------------- 303 (443)
..+++|...|+.+.|+......+.+++.|++|+.||.....
T Consensus 195 ~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~ 274 (1081)
T KOG0309|consen 195 CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQL 274 (1081)
T ss_pred EEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeec
Confidence 78889999999999986666778899999999999965100
Q ss_pred ------------CCCceeeeecCCCCCeEEEEECCCC----------CEEEEEeCCCCEEEEeCCC
Q 013436 304 ------------VKGKPAGVLMGHLEGITFIDSRGDG----------RYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 304 ------------~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~s~~~dg~i~iwd~~~ 347 (443)
....++..+.||...|....|...+ -.|++=+.|..+++|-+.+
T Consensus 275 ~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 275 RCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 0135677888888888777665422 2689999999999998865
No 284
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.05 E-value=5.5e-07 Score=78.38 Aligned_cols=218 Identities=18% Similarity=0.194 Sum_probs=136.3
Q ss_pred CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCC
Q 013436 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (443)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (443)
+|.|..||..+|+.+-...........+. . ..+++..+++++.++.|..||..+++..-..........
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--------- 70 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVA-T-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG--------- 70 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEE-T-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS---------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccc-e-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc---------
Confidence 68899999999988776544222222221 1 223567788889999999999999987654443221110
Q ss_pred CceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEe-eccCC---CeEEEEEeCCCCCEEEEeeCCCeEEEEecc
Q 013436 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 225 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~---~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~ 300 (443)
. . ..++..+++++.++.|+.+|..+++.+... ..... ....+... ..++.++++..++.|..+|++
T Consensus 71 ----~---~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 71 ----A---P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp ----G---E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEETT
T ss_pred ----e---e--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEecC
Confidence 1 1 123556777778889999999999988774 32211 11122221 237788888889999999998
Q ss_pred cCCCCCceeeeecCCCCC----------e-EEEEECCCCCEEEEEeCCCC-EEEEeCCCCCCccccCCcccccCcccccc
Q 013436 301 CLNVKGKPAGVLMGHLEG----------I-TFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNASCNLGFRSYEWDYRWM 368 (443)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (443)
+++.+......... + ..+.+. ++ .+..++.++. +.+ |+.+.
T Consensus 141 ----tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg-------------------- 193 (238)
T PF13360_consen 141 ----TGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATG-------------------- 193 (238)
T ss_dssp ----TTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTT--------------------
T ss_pred ----CCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCC--------------------
Confidence 88887776553322 1 223333 44 6666666775 555 99883
Q ss_pred cCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhh
Q 013436 369 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
+.+-....+. ... ...+++..|+.++.++.|..||+.+|+.+
T Consensus 194 --------------~~~w~~~~~~----~~~-----~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 194 --------------EKLWSKPISG----IYS-----LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp --------------EEEEEECSS-----ECE-----CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred --------------CEEEEecCCC----ccC-----CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 3221111111 100 01236778888889999999999999864
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.05 E-value=8.1e-08 Score=85.63 Aligned_cols=175 Identities=18% Similarity=0.160 Sum_probs=133.7
Q ss_pred ECC-CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC-eEEEEECCCCceeccccc
Q 013436 132 FSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSGTMESLANV 209 (443)
Q Consensus 132 ~s~-~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~ 209 (443)
|++ +|.+++..+. |...|.+...+-.++ .++...|.-..+..+++-++.|..|| .+-|+|..+++.......
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~ 400 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD 400 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE-----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC
Confidence 444 6888888876 778888877764443 24555688888888888999999999 899999999886544331
Q ss_pred eecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee
Q 013436 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289 (443)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 289 (443)
-+.|.++..+|+|++++++.....|.++|+.+++....-+...+-|+.+.|+ ++++++|-+-
T Consensus 401 -----------------lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~-~nsr~iAYaf 462 (668)
T COG4946 401 -----------------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH-PNSRWIAYAF 462 (668)
T ss_pred -----------------ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc-CCceeEEEec
Confidence 2279999999999999999999999999999998765555677889999998 8899999887
Q ss_pred CCC----eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 013436 290 DDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (443)
Q Consensus 290 ~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 335 (443)
-+| .|+++|+. .++.... ....+-=.+-+|.|++++|.--+
T Consensus 463 P~gy~tq~Iklydm~----~~Kiy~v-TT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 463 PEGYYTQSIKLYDMD----GGKIYDV-TTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CcceeeeeEEEEecC----CCeEEEe-cCCcccccCcccCCCCcEEEEEe
Confidence 665 78999996 4444433 22333335667899999876443
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=1.6e-09 Score=92.47 Aligned_cols=151 Identities=19% Similarity=0.282 Sum_probs=114.0
Q ss_pred EEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-----
Q 013436 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----- 259 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~----- 259 (443)
++.+.+..|-+-|++++-..... .++.|.+++|...++.+..|..+|.|..+|++.+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~------------------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~ 289 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ------------------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG 289 (425)
T ss_pred ecccccceeEEEEeecccccccc------------------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC
Confidence 44455566777777776443222 2337889999988999999999999999999875
Q ss_pred eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEE--EECCCCCEEEEEeCC
Q 013436 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI--DSRGDGRYLISNGKD 337 (443)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~s~~~d 337 (443)
.+...+ .|.+.|+++..-..++++|.+.+.+|+|++||.|..+ .++.+..+.||...-.-+ ...+....+++++.|
T Consensus 290 ~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 290 WCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred cceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh-cccceeeeecccccccccccccccccceEEEccCe
Confidence 333444 7899999998875588899999999999999999433 334488899986644433 355677788999999
Q ss_pred CCEEEEeCCCCCCccccC
Q 013436 338 QAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 338 g~i~iwd~~~~~~~~~~~ 355 (443)
...+||.++.+..+....
T Consensus 368 cytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred eEEEEEecccCceeeccC
Confidence 999999999866555443
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=2.1e-07 Score=96.74 Aligned_cols=214 Identities=14% Similarity=0.139 Sum_probs=136.0
Q ss_pred ceEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEeeec-------CC-------ccceEEEEEECC-CCCeEEEEEC
Q 013436 126 RAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILA-------KS-------LRWTVTDTSLSP-DQRHLVYASM 189 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~-~d~~i~iwd~~~~~~~~~~~~~-------~~-------~~~~v~~i~~s~-~~~~l~~~~~ 189 (443)
....++++++++.|+++. .++.|+++|+.++. +...... .+ .-.....++++| ++..+++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 468899999888666654 45679999988763 3222110 00 011246799999 4556666677
Q ss_pred CCeEEEEECCCCceeccccceecccCceeeccC---CCCceecEEEEEEeCCCCEEE-EEecCCeEEEEECCCCeeeEEe
Q 013436 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD---DGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRI 265 (443)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~ 265 (443)
++.|++||..++........ +....... ....-.....++++|+++.|+ +-+.++.|++||+.++......
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~-----G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGD-----GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred CCeEEEEECCCCeEEEEecC-----CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 88999999987754321110 00000000 000112456799999998554 5556789999999876532111
Q ss_pred ec---------------------cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee------------
Q 013436 266 LA---------------------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL------------ 312 (443)
Q Consensus 266 ~~---------------------~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------ 312 (443)
.+ .-.....++++ ++++++++-+.++.|++||.. .+......
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-~dG~LYVADs~N~rIrviD~~----tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-KDGQIYVADSYNHKIKKLDPA----TKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEe-CCCcEEEEECCCCEEEEEECC----CCeEEEEeccCCcCCCCCcc
Confidence 00 01124578886 778888888899999999986 33322111
Q ss_pred -cCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 313 -MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 313 -~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
.+.-.....++++++|+++++.+.++.|++||+++...
T Consensus 854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 11223567899999999999999999999999988654
No 288
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.00 E-value=3.2e-07 Score=85.80 Aligned_cols=227 Identities=15% Similarity=0.107 Sum_probs=139.5
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceeccc
Q 013436 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (443)
.+..+++++.++.|..+|..+|+.+-+......... ... .++..+++++.++.+..+|..+++..-......
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--- 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--- 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---
Confidence 366788888899999999999976654333322111 122 246778888999999999999988754333211
Q ss_pred CceeeccCCCCceecEEE-EEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCe-----EEEEEeCCCCCEEEEe
Q 013436 215 GLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGHLIYSG 288 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~-l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~~l~~~ 288 (443)
.+.+ ... .+..++.++.+|.|+.||.++++.+..+......+ .+.... +..++.+
T Consensus 136 --------------~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~ 196 (377)
T TIGR03300 136 --------------EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA---DGGVLVG 196 (377)
T ss_pred --------------eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE---CCEEEEE
Confidence 1111 111 24567778889999999999998877665332211 112222 2367788
Q ss_pred eCCCeEEEEecccCCCCCceeeeecCCC----CC---eEEEEECC--CCCEEEEEeCCCCEEEEeCCCCCCccccCCccc
Q 013436 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHL----EG---ITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (443)
Q Consensus 289 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~---v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (443)
..++.+..+|.+ +++.+....... .. +..+.-+| .+..+++++.+|.+..||..+++...
T Consensus 197 ~~~g~v~ald~~----tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W------- 265 (377)
T TIGR03300 197 FAGGKLVALDLQ----TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW------- 265 (377)
T ss_pred CCCCEEEEEEcc----CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE-------
Confidence 888999999987 565544322100 00 00011111 24577778889999999998743221
Q ss_pred ccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
...... ...|. .++..++.++.||.|+.+|..+|+.+-..
T Consensus 266 ---------------------------~~~~~~--------~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 266 ---------------------------KRDASS--------YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred ---------------------------eeccCC--------ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 111000 01111 14567888889999999999999876443
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.99 E-value=3.8e-09 Score=86.68 Aligned_cols=213 Identities=11% Similarity=0.123 Sum_probs=130.3
Q ss_pred cccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE---
Q 013436 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--- 188 (443)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~--- 188 (443)
....+.+.+..|.++-.+-+.+--++.++++..||.+.+++.+....+.... ...|.+ -.+.+....++.+.++.
T Consensus 77 ~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i-~~~~~~-~as~~~~~~~~~i~s~~~g~ 154 (319)
T KOG4714|consen 77 DGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI-PSIHSG-SASRKICRHGNSILSGGCGN 154 (319)
T ss_pred cCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc-cccccc-ccccceeecccEEecCCcce
Confidence 3444556666777777777777778889999999999999987532111111 111111 11222223344443322
Q ss_pred --CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCee-eEE
Q 013436 189 --MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL-SLR 264 (443)
Q Consensus 189 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-~~~ 264 (443)
.-+..++|+++..+....... ....|.+++-+| +...+++|+.||.+.+||.+.... ...
T Consensus 155 ~n~~d~~~a~~~~p~~t~~~~~~----------------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~ 218 (319)
T KOG4714|consen 155 WNAQDNFYANTLDPIKTLIPSKK----------------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL 218 (319)
T ss_pred Eeeccceeeeccccccccccccc----------------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH
Confidence 122344555543322111110 011488888898 556788899999999999988743 345
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCC-------------CCCceeee-------ecCCCCCeEEEEE
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-------------VKGKPAGV-------LMGHLEGITFIDS 324 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------~~~~~~~~-------~~~~~~~v~~~~~ 324 (443)
+..|+.++..+-|+|.++..|++++.||.+--||..... ..+.+++. +......|+++..
T Consensus 219 l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV 298 (319)
T KOG4714|consen 219 LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV 298 (319)
T ss_pred HHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec
Confidence 668999999999999999999999999999999975100 01111111 0111123344333
Q ss_pred CCCCCEEEEEeCCCCEEEEe
Q 013436 325 RGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 325 ~~~~~~l~s~~~dg~i~iwd 344 (443)
-|..|++|+.-+.|++++
T Consensus 299 --~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 299 --LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred --cCceEEeccccceEEEec
Confidence 467889988888888875
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1.8e-07 Score=88.40 Aligned_cols=245 Identities=11% Similarity=0.057 Sum_probs=163.4
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC------------CeEEEEECCCeE
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ------------RHLVYASMSPIV 193 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~------------~~l~~~~~dg~i 193 (443)
.-.++.|+|.| +||.|+. ..|.+-|..+-+.++ ....|+..|+.+.|.|.. -.||++...|.|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 36778899877 5777765 578888987764444 466777889999998731 256777888999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC---CC-CEEEEEecCCeEEEEECCCCeeeEEeeccC
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DG-RELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 269 (443)
.+||...+......+ .|..++.+++|-+ +. ..|++-.....|.+|+..+|+...+.....
T Consensus 92 il~d~~~~s~~~~l~----------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~ 155 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLS----------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH 155 (1062)
T ss_pred EEEEehhhhhhhhhc----------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC
Confidence 999998776544433 2444788888876 34 467777778899999999999888877767
Q ss_pred CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC---CCceeeeecCCCC------------C-------------eEE
Q 013436 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMGHLE------------G-------------ITF 321 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~------------~-------------v~~ 321 (443)
....|+.+.|-+...+..-+..|.+.+-+.-.... .++..+.-..|.. . ...
T Consensus 156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~ 235 (1062)
T KOG1912|consen 156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ 235 (1062)
T ss_pred cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence 77888999887888777777778777776543222 2222222222221 0 012
Q ss_pred EEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEE
Q 013436 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (443)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (443)
++|+|.-+.++-......+.|+|++-.. ++....-.......+.
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~~~----------------------------------~l~vvpier~~akfv~-- 279 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEYEC----------------------------------CLAVVPIERGGAKFVD-- 279 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchhhc----------------------------------eeEEEEeccCCcceeE--
Confidence 4567765555555556778888887633 3333333332222222
Q ss_pred ecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 402 ~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
+-|++ ....|++.-.||.+.||--+.
T Consensus 280 vlP~~--~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 280 VLPDP--RRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eccCC--CcceEEEEecCCeEEEEEeec
Confidence 33332 456799999999999997665
No 291
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=4.1e-10 Score=107.10 Aligned_cols=200 Identities=21% Similarity=0.192 Sum_probs=145.2
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC--CeEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVH 194 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d--g~i~ 194 (443)
-..++.|+..-+|++|+.+.++|+.|+..|.|++|++.+|.... ....|..+|+.+.-+.||..+++.+.- ....
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcceeeeeccccCchHH
Confidence 34678899999999999999999999999999999999995433 567899999999999999887765533 3577
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee----ccCC
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL----AHTS 270 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~ 270 (443)
+|++..- ....... ..-.++.|+.....-+.|.......+||++++.++.++. +...
T Consensus 1171 LW~~~s~-~~~~Hsf------------------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1171 LWDASST-GGPRHSF------------------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred Hhccccc-cCccccc------------------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 8998652 1111111 145678888765555666666779999999998776632 1222
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
.-++..|+ |+..+++ .|| .+||+| ..+.++.|......+ .-.|+|+|..++..+ .|||+|+.+.
T Consensus 1232 ~~n~a~Fs-P~D~LIl---ndG--vLWDvR----~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1232 SNNLAHFS-PCDTLIL---NDG--VLWDVR----IPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKL 1295 (1516)
T ss_pred hccccccC-CCcceEe---eCc--eeeeec----cHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHH
Confidence 33677887 6666664 455 589999 667777776554222 234999999888876 5999999776
Q ss_pred cccc
Q 013436 351 NASC 354 (443)
Q Consensus 351 ~~~~ 354 (443)
+...
T Consensus 1296 Lh~V 1299 (1516)
T KOG1832|consen 1296 LHSV 1299 (1516)
T ss_pred HhcC
Confidence 5544
No 292
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.97 E-value=3.2e-07 Score=85.82 Aligned_cols=232 Identities=15% Similarity=0.100 Sum_probs=140.5
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEE-EEECCCCCeEEEEECCCeEEEEECCCCceeccccceecc
Q 013436 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 213 (443)
++..+++++.++.+..+|..+|+.+.+..... .+.+ ... .+..++.++.++.|..||.++++..-........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS----EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence 46778888899999999999987665432211 1211 111 3456777888999999999998765433221100
Q ss_pred cCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCC----C------e-EEEEEeCCCC
Q 013436 214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS----D------V-NTVCFGDESG 282 (443)
Q Consensus 214 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~------v-~~i~~~~~~~ 282 (443)
.. . . ...+.... +..++.+..+|.+..+|+++++.+........ . + .+..+ .+
T Consensus 178 ~~--~-----~----~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~ 241 (377)
T TIGR03300 178 LT--L-----R----GSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DG 241 (377)
T ss_pred ee--e-----c----CCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---EC
Confidence 00 0 0 00011112 24677888889999999999986654321100 0 0 11112 24
Q ss_pred CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccC
Q 013436 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 362 (443)
Q Consensus 283 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (443)
..+++++.+|.+..||.. +++.+..... .....+.. .+..++.++.||.|..+|..+++.+....
T Consensus 242 ~~vy~~~~~g~l~a~d~~----tG~~~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~------- 306 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLR----SGRVLWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKND------- 306 (377)
T ss_pred CEEEEEEcCCEEEEEECC----CCcEEEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccc-------
Confidence 577888899999999998 6766655431 11122222 45677778889999999998854322210
Q ss_pred cccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhH
Q 013436 363 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~ 437 (443)
.+.+. ...+|.. .+..|++++.||.|+++|..+|+++..++
T Consensus 307 ------------------------~~~~~--------~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 307 ------------------------ELKYR--------QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred ------------------------cccCC--------ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 00000 0111111 35688999999999999999999876543
No 293
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.97 E-value=6.3e-07 Score=80.58 Aligned_cols=180 Identities=15% Similarity=0.051 Sum_probs=106.9
Q ss_pred CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC----------CCeEEEEECCCCceeccccceecccC
Q 013436 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------SPIVHIVDVGSGTMESLANVTEIHDG 215 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (443)
++|.+.|..+++.+........ ...+ +|||++.|+++.. +..|.+||..+.+......+......
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~----P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL----PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC----Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 7899999999876665443333 2224 9999998887665 77999999999987655544322110
Q ss_pred ceeeccCCCCceecEEEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCe
Q 013436 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 293 (443)
Q Consensus 216 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~ 293 (443)
. ....-..++++|||++|++... +..|.+.|+.+++.+..+.... ...-... +..... +-+.||.
T Consensus 102 ~---------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t-~e~~~~--~~~~Dg~ 168 (352)
T TIGR02658 102 L---------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPT-ANDTFF--MHCRDGS 168 (352)
T ss_pred h---------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEe-cCCccE--EEeecCc
Confidence 0 0012346899999999998763 6889999999999988876422 1111122 122222 2334554
Q ss_pred EEEEecccCCCCCce-ee---eecCCCCCeE-EEEECC-CCCEEEEEeCCCCEEEEeCCC
Q 013436 294 CKVWDRRCLNVKGKP-AG---VLMGHLEGIT-FIDSRG-DGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 294 i~iwd~~~~~~~~~~-~~---~~~~~~~~v~-~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.....+.. .++. .. .+.+...++. .-.|.+ +|+++..... |.|.+.|+..
T Consensus 169 ~~~v~~d~---~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~ 224 (352)
T TIGR02658 169 LAKVGYGT---KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSS 224 (352)
T ss_pred eEEEEecC---CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCC
Confidence 44433331 1111 11 1111000000 003344 8888777766 9999999765
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.97 E-value=4.5e-07 Score=76.24 Aligned_cols=234 Identities=14% Similarity=0.082 Sum_probs=127.6
Q ss_pred EEECCCCCeEEEEECCCeEEEEECCCCc--eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEE
Q 013436 175 TSLSPDQRHLVYASMSPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (443)
Q Consensus 175 i~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 252 (443)
++.+.+|+.||+. .|..|.|-..+..= .+...++.. .....=..++||||+..||.+...|+|+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpk-------------D~~PQWRkl~WSpD~tlLa~a~S~G~i~ 68 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPK-------------DPNPQWRKLAWSPDCTLLAYAESTGTIR 68 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCC-------------CCCchheEEEECCCCcEEEEEcCCCeEE
Confidence 5667788877664 45555554443321 111111111 1111456799999999999999999999
Q ss_pred EEECCCCeeeEEeec-------cCCCeEEEEEeCCC-----CCEEEEeeCCCeEEEEecccC-CCCCceeeee--cC-CC
Q 013436 253 VYDLEANKLSLRILA-------HTSDVNTVCFGDES-----GHLIYSGSDDNLCKVWDRRCL-NVKGKPAGVL--MG-HL 316 (443)
Q Consensus 253 iwd~~~~~~~~~~~~-------~~~~v~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~--~~-~~ 316 (443)
++|+.... +..+.. -...|..|.|.+.. ...|++-..+|.++-|-+... .........+ .. +.
T Consensus 69 vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp 147 (282)
T PF15492_consen 69 VFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP 147 (282)
T ss_pred EEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC
Confidence 99997643 333321 23456677775432 224666677887777765311 0122223332 22 46
Q ss_pred CCeEEEEECCCCCEEEEEeCCC-----------CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCe--
Q 013436 317 EGITFIDSRGDGRYLISNGKDQ-----------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ-- 383 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 383 (443)
.+|+++.++|..++|++|+... -+.-|.+-+..+-... +.-..+..........
T Consensus 148 ~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~-------------v~~~~~~~~~~~~~~~~~ 214 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ-------------VTSSEDDITASSKRRGLL 214 (282)
T ss_pred CceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE-------------ccccCcccccccccccee
Confidence 7999999999988888776421 2444544443221110 0000000000000000
Q ss_pred eEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
.+..++-..........+|.+..||||..||+...+|.|.+|++-+-++....
T Consensus 215 ~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 215 RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 01111100000111234466668889999999999999999999887665443
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.93 E-value=1e-05 Score=70.75 Aligned_cols=196 Identities=17% Similarity=0.153 Sum_probs=127.4
Q ss_pred EEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEEC-CCCCeEEEEECCCeEEEEECCCCceecc
Q 013436 129 VSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS-PDQRHLVYASMSPIVHIVDVGSGTMESL 206 (443)
Q Consensus 129 ~~~~s~-~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 206 (443)
++.|.+ ++.++++-...+.|..|+..++.... ..... ...+++. +++ .|+++...+ +.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~----~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG----PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS----EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC----CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEE
Confidence 568888 77777777778999999999874332 12222 5667777 564 555556555 55569998876555
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC--------CeEEEEECCCCeeeEEeeccCCCeEEEEEe
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (443)
....... ......+++++.|+|++.++.... |.|+.++.. ++... +...-...+.|+|+
T Consensus 76 ~~~~~~~-----------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s 142 (246)
T PF08450_consen 76 ADLPDGG-----------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFS 142 (246)
T ss_dssp EEEETTC-----------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEE
T ss_pred eeccCCC-----------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEEC
Confidence 4432110 022378899999999977765543 668888887 55433 33445667999998
Q ss_pred CCCCCEE-EEeeCCCeEEEEecccCCCCCc---eeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 279 DESGHLI-YSGSDDNLCKVWDRRCLNVKGK---PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 279 ~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
++++.| ++-+..+.|..+++........ ....+....+....+++..+|++.++....+.|.++|.+
T Consensus 143 -~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 143 -PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred -CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 667655 4667788899999863211111 122222222347789999999988888888999999976
No 296
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.88 E-value=3.5e-06 Score=83.92 Aligned_cols=216 Identities=17% Similarity=0.124 Sum_probs=135.8
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
.+.|.++.|..++.-++.+..+|.|.+-|.++.... ........|.+++||||++.++..+..+++.+-.- +-..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEP 142 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccc
Confidence 468999999999999999999999999988876222 22233445999999999999999998887766432 1111
Q ss_pred ecc-------------ccceecccCceeeccCC----------------CCceecEEEEEEeCCCCEEEEE-----ecCC
Q 013436 204 ESL-------------ANVTEIHDGLDFSAADD----------------GGYSFGIFSLKFSTDGRELVAG-----SSDD 249 (443)
Q Consensus 204 ~~~-------------~~~~~~~~~~~~~~~~~----------------~~~~~~i~~l~~~~~~~~l~~~-----~~dg 249 (443)
+.. .++.-......|..... ......=.++.|--||.++++. ....
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 111 11111111111111000 0011123358999999999983 2236
Q ss_pred eEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee---CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC
Q 013436 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (443)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (443)
.|+|||-+ +..-..-....+.-.+++|- |.|.++++-. .|+.|.+|...... .+.....+......+..++|+.
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCcc-ccccccCCcccccchheeeecC
Confidence 89999976 43222222233344688996 6888887753 45679999864221 2222223333344599999999
Q ss_pred CCCEEEE---EeCCCCEEEEeCCC
Q 013436 327 DGRYLIS---NGKDQAIKLWDIRK 347 (443)
Q Consensus 327 ~~~~l~s---~~~dg~i~iwd~~~ 347 (443)
++..|++ ......|++|-+.+
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCCceeeeecccccceEEEEEecC
Confidence 9999987 44455599999887
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4e-08 Score=86.96 Aligned_cols=283 Identities=11% Similarity=0.063 Sum_probs=176.3
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC-CCeEEEEECCCC
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 201 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg~i~iwd~~~~ 201 (443)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-.-+.-......|-..|.+++.+-++.++.+.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 45555555443 5679999999999999986542223333345677788999999999999999777 999999999887
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCC-C-CEEEEE-ecCCeEEEEECCCCee--eEEeeccCCCeEEEE
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-G-RELVAG-SSDDCIYVYDLEANKL--SLRILAHTSDVNTVC 276 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~-~~l~~~-~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~ 276 (443)
...........+ ...++..+|. - ..++++ -.+|.|.++|-....+ ...-.-|..+|..+.
T Consensus 87 DminmiKL~~lP---------------g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 87 DMINMIKLVDLP---------------GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred chhhhcccccCC---------------CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEE
Confidence 665444443322 1222222321 1 133333 3568899999765532 233346899999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEeccc-CCCCCc-e---------eeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRC-LNVKGK-P---------AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~-~---------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
++ +.++.+++....|.|.-|.... ...... . +..+.......+++.|+|++..+.+-+.|..|+++++
T Consensus 152 y~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 152 YN-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred ee-ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 98 7888899999999999999862 110111 1 1112223456789999999999999999999999999
Q ss_pred CCCCCccccCCcccccCc----ccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCe
Q 013436 346 RKMSSNASCNLGFRSYEW----DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (443)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~ 421 (443)
++++..+.+......... .+..+...-..+ ++ .-+.+..|.... .... +|...|++|+-|+-=|
T Consensus 231 KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRR-ma-----verelek~~~~~-~~~~----~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 231 KTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRR-MA-----VERELEKHGSTV-GTNA----VFDESGNFLLYGTILG- 298 (558)
T ss_pred ccchhhhhhhccchhhhhccccccccceeehhhh-hh-----HHhhHhhhcCcc-ccee----EEcCCCCEEEeeccee-
Confidence 998876665432111111 110000000000 00 001111122111 1122 3555789999888766
Q ss_pred EEEEEccChhhhh
Q 013436 422 VYVYDLVSIQILF 434 (443)
Q Consensus 422 v~iwd~~~g~~~~ 434 (443)
|++.++.+++.+.
T Consensus 299 ikvin~~tn~v~r 311 (558)
T KOG0882|consen 299 IKVINLDTNTVVR 311 (558)
T ss_pred EEEEEeecCeEEE
Confidence 7888888876553
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.86 E-value=7.8e-06 Score=71.04 Aligned_cols=201 Identities=15% Similarity=0.198 Sum_probs=129.2
Q ss_pred ceEEEEECC-CCCEEEEEECCCe-EEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC-----CCeEEEEEC
Q 013436 126 RAYVSQFSA-DGSLFVAGFQASQ-IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDV 198 (443)
Q Consensus 126 ~v~~~~~s~-~~~~l~~g~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-----dg~i~iwd~ 198 (443)
....++.+| ....++.+-.-|+ ..+||..++..........+.. ---.-.||+||++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH-FyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH-FYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE-EecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 445778889 4566777766664 7889999997665443322211 1223679999999998643 479999999
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec------------------CCeEEEEECCCCe
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------------------DDCIYVYDLEANK 260 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~ 260 (443)
.. ....+-.... |.-.-..+.+.|||+.|+++.. +..+...|..+++
T Consensus 85 ~~-~~~ri~E~~s--------------~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 85 AR-GYRRIGEFPS--------------HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred cC-CcEEEeEecC--------------CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc
Confidence 82 2222211111 1113446788999988887631 2356777888888
Q ss_pred eeEEee----ccCCCeEEEEEeCCCCCEEEEeeCCC-------eEEEEecccCCCCCceeeee-------cCCCCCeEEE
Q 013436 261 LSLRIL----AHTSDVNTVCFGDESGHLIYSGSDDN-------LCKVWDRRCLNVKGKPAGVL-------MGHLEGITFI 322 (443)
Q Consensus 261 ~~~~~~----~~~~~v~~i~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~-------~~~~~~v~~~ 322 (443)
.+.+.. -|...|..+++. .++..++..-..| .|-+++.. ..+..+ .....-+-+|
T Consensus 150 ll~q~~Lp~~~~~lSiRHLa~~-~~G~V~~a~Q~qg~~~~~~PLva~~~~g------~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 150 LLEQVELPPDLHQLSIRHLAVD-GDGTVAFAMQYQGDPGDAPPLVALHRRG------GALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred eeeeeecCccccccceeeEEec-CCCcEEEEEecCCCCCccCCeEEEEcCC------CcceeccCChHHHHhhCCceEEE
Confidence 776633 377789999996 7776655543333 24444432 212222 2334678999
Q ss_pred EECCCCCEEEEEe-CCCCEEEEeCCCCC
Q 013436 323 DSRGDGRYLISNG-KDQAIKLWDIRKMS 349 (443)
Q Consensus 323 ~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 349 (443)
++++++.++++++ ..+.+.+||..+.+
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 9999998876555 57889999999854
No 299
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.81 E-value=5.1e-06 Score=85.07 Aligned_cols=200 Identities=13% Similarity=0.123 Sum_probs=124.6
Q ss_pred CceEEEEECCCCCEEEEEECCC----eEEEEECCCCeEEEEeeec-----CCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 125 SRAYVSQFSADGSLFVAGFQAS----QIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~----~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
..+...+|.+..+.+....... .|.+-.............. ......|.++.+-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 3567777777665444333322 2344333322211111111 133457999999999999999999999999
Q ss_pred E----ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC--------------
Q 013436 196 V----DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-------------- 257 (443)
Q Consensus 196 w----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~-------------- 257 (443)
. +..+.....+-.+. .+|.+++||||+..|+..+.++.|.+.+-.
T Consensus 102 ~~~~~~~~~~~~E~VG~vd-----------------~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~ 164 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSVD-----------------SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDF 164 (928)
T ss_pred EEccCCCCCceeEEEEEEc-----------------CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence 9 55555443333222 279999999999999999999988776421
Q ss_pred -CCeee--------EEee------------------------ccCCCeEEEEEeCCCCCEEEEeeC---C---CeEEEEe
Q 013436 258 -ANKLS--------LRIL------------------------AHTSDVNTVCFGDESGHLIYSGSD---D---NLCKVWD 298 (443)
Q Consensus 258 -~~~~~--------~~~~------------------------~~~~~v~~i~~~~~~~~~l~~~~~---d---~~i~iwd 298 (443)
..+.+ ..|. .....-..|+|- .||.++|+.+. . ..++||+
T Consensus 165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR-GDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR-GDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC-CCCcEEEEEEEEcCCCceeEEEEEC
Confidence 00000 0000 022345678895 89999998874 2 5799999
Q ss_pred cccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC---CCCEEEEeCCC
Q 013436 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK---DQAIKLWDIRK 347 (443)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~ 347 (443)
.. +.....-..-.+--.+++|.|.|+++|+.-. ...|.+|.-+.
T Consensus 244 Re-----G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG 290 (928)
T PF04762_consen 244 RE-----GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG 290 (928)
T ss_pred CC-----ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC
Confidence 74 4444333333333457899999999998765 34566666543
No 300
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.81 E-value=1.2e-06 Score=79.11 Aligned_cols=115 Identities=23% Similarity=0.331 Sum_probs=81.1
Q ss_pred ceecEEEEEEeCCCCEEEEEe--cCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCC---CeEEEEecc
Q 013436 226 YSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRR 300 (443)
Q Consensus 226 ~~~~i~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~iwd~~ 300 (443)
..++|.+++|.|.++.+++.+ .+-.+.++|++.+ . .+......-+.+.|+ +.+++++.++-| |.+.+||..
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l--~~~~Pe~~rNT~~fs-p~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L--RFYFPEQKRNTIFFS-PHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc-e--EEecCCccccccccc-CcccEEEEecCCccccceEEeccC
Confidence 356788899998887766654 5677888888776 2 233445556788897 788888887755 689999986
Q ss_pred cCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe------CCCCEEEEeCCCCC
Q 013436 301 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG------KDQAIKLWDIRKMS 349 (443)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~ 349 (443)
. ...++..+.+.. ..-+.|+||++++.+.. .|..|+|||+....
T Consensus 349 ~---rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 349 G---RFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred C---ceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 1 233444555443 34567999999887654 27889999997643
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.2e-07 Score=83.92 Aligned_cols=230 Identities=13% Similarity=0.026 Sum_probs=144.3
Q ss_pred CccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe
Q 013436 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (443)
Q Consensus 167 ~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 246 (443)
-|+..|+.+.- ...+++.+++.||.++.|.-..-.......... .|-..|.+++.+-++..+.+++
T Consensus 7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-------------aHL~~I~sl~~S~dg~L~~Sv~ 72 (558)
T KOG0882|consen 7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-------------AHLGVILSLAVSYDGWLFRSVE 72 (558)
T ss_pred cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhH-------------HHHHHHHhhhccccceeEeecc
Confidence 35555666543 346789999999999999865422222222211 2455788899999999999977
Q ss_pred c-CCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCC----CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEE
Q 013436 247 S-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321 (443)
Q Consensus 247 ~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 321 (443)
. |..++++|+.+-..+.-++. ......++|....| .+.++.-.++.+.++|-+.. ..+....-.-|..+|..
T Consensus 73 d~Dhs~KvfDvEn~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d--~~q~~~fkklH~sPV~~ 149 (558)
T KOG0882|consen 73 DPDHSVKVFDVENFDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGD--FCQDGYFKKLHFSPVKK 149 (558)
T ss_pred CcccceeEEEeeccchhhhccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCC--cCccceecccccCceEE
Confidence 7 99999999987654432221 11112223321222 23333446789999998732 12333344468999999
Q ss_pred EEECCCCCEEEEEeCCCCEEEEeCCCC-CCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEE
Q 013436 322 IDSRGDGRYLISNGKDQAIKLWDIRKM-SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (443)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (443)
+.+++-+..+++....|.|.-|..... +-+.. ...|.+ ..+..+..+..... .
T Consensus 150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~------~l~~~~--------------K~eTdLy~f~K~Kt--~---- 203 (558)
T KOG0882|consen 150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT------NLNFEL--------------KHETDLYGFPKAKT--E---- 203 (558)
T ss_pred EEeeccccceeeccccceeEeecCCCcccCccc------cccccc--------------cccchhhccccccc--C----
Confidence 999999999999999999999988741 10000 000000 00111111111111 1
Q ss_pred EecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhHHh
Q 013436 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQSL 439 (443)
Q Consensus 401 ~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~~~ 439 (443)
..+..|+|+|..+.+-+.|..|+++++.+|+++..++..
T Consensus 204 pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 204 PTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred ccceEEccccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 122347779999999999999999999999998877643
No 302
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=3.6e-08 Score=89.41 Aligned_cols=221 Identities=16% Similarity=0.119 Sum_probs=147.1
Q ss_pred ccccceeeccccc-------CCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEE
Q 013436 102 ADCCHMLSRYLPV-------NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (443)
Q Consensus 102 ~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 174 (443)
.+....+|.+-|. -+.+++..|..+|..+.|-.+.++++++ ||.|.+||.--+..+.+......|. .+..
T Consensus 755 kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~-a~~~ 831 (1034)
T KOG4190|consen 755 KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEG-AGGN 831 (1034)
T ss_pred CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccC-CCce
Confidence 3444455655442 2567889999999999999999988876 7889999987765544333222222 2333
Q ss_pred EEECCC--CCeEEEE-ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeE
Q 013436 175 TSLSPD--QRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (443)
Q Consensus 175 i~~s~~--~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i 251 (443)
+.--++ ...++.+ +...+|+++|.+..+.....++-.. .+...-+.+++..+.|++++++-.+|+|
T Consensus 832 ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna-----------~~Pna~~R~iaVa~~GN~lAa~LSnGci 900 (1034)
T KOG4190|consen 832 IKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA-----------PGPNALTRAIAVADKGNKLAAALSNGCI 900 (1034)
T ss_pred eEecccCcchheeeeccchhhheeeecccccceeeEEeccC-----------CCCchheeEEEeccCcchhhHHhcCCcE
Confidence 333343 3444444 6788999999998887655544321 1344478999999999999999999999
Q ss_pred EEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEE-EecccCCCCCceeeeecCCCCCeEEEEECCCCCE
Q 013436 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV-WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (443)
Q Consensus 252 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 330 (443)
.+.|.++|+.+..++........++- |..+.++....|.++.+ |..- .+...........+...+. .-|.-
T Consensus 901 ~~LDaR~G~vINswrpmecdllqlaa--psdq~L~~saldHslaVnWhal----dgimh~q~kpppepahflq--svgpS 972 (1034)
T KOG4190|consen 901 AILDARNGKVINSWRPMECDLLQLAA--PSDQALAQSALDHSLAVNWHAL----DGIMHLQDKPPPEPAHFLQ--SVGPS 972 (1034)
T ss_pred EEEecCCCceeccCCcccchhhhhcC--chhHHHHhhcccceeEeeehhc----CCeeeeccCCCCcchhhhh--ccCce
Confidence 99999999988887765555555544 66677888888888888 8764 3333333332222222111 13556
Q ss_pred EEEEeCCCCEEEEe
Q 013436 331 LISNGKDQAIKLWD 344 (443)
Q Consensus 331 l~s~~~dg~i~iwd 344 (443)
|++......+.+|-
T Consensus 973 LV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 973 LVTAQNGNILGVYA 986 (1034)
T ss_pred eEEeccCcEEEEEe
Confidence 77776666777773
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.75 E-value=2.7e-08 Score=58.98 Aligned_cols=38 Identities=34% Similarity=0.576 Sum_probs=36.3
Q ss_pred ceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 307 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
+++..+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57789999999999999999999999999999999997
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.73 E-value=5.2e-05 Score=66.23 Aligned_cols=181 Identities=21% Similarity=0.157 Sum_probs=115.2
Q ss_pred eEEEEEC-CCCCEEEEEECCCeEEEEECCCCeEEEEeeec-CC-ccceEEEEEECCCCCeEEEEECC--------CeEEE
Q 013436 127 AYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KS-LRWTVTDTSLSPDQRHLVYASMS--------PIVHI 195 (443)
Q Consensus 127 v~~~~~s-~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~-~~-~~~~v~~i~~s~~~~~l~~~~~d--------g~i~i 195 (443)
...+++. +++.+ +.+..+ .+.++|..+++........ .. .....+++++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEE-EEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEE-EEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6677777 66554 444454 4566699888433322221 22 44568999999999977765543 45777
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEE-EEecCCeEEEEECCCCee----eEEe---ec
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKL----SLRI---LA 267 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~----~~~~---~~ 267 (443)
++.. ++........ .....++|+|+++.|+ +-+..+.|..+++..... ...+ ..
T Consensus 120 ~~~~-~~~~~~~~~~-----------------~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 181 (246)
T PF08450_consen 120 IDPD-GKVTVVADGL-----------------GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG 181 (246)
T ss_dssp EETT-SEEEEEEEEE-----------------SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred ECCC-CeEEEEecCc-----------------ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC
Confidence 7766 4433222211 1467899999998776 556778899999863221 1122 22
Q ss_pred cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEEC-CCCCEEEE
Q 013436 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLIS 333 (443)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s 333 (443)
..+..-.+++. .+|++.++....+.|.++|. .++.+..+......+++++|. ++.+.|..
T Consensus 182 ~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p-----~G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 182 GPGYPDGLAVD-SDGNLWVADWGGGRIVVFDP-----DGKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp SSCEEEEEEEB-TTS-EEEEEETTTEEEEEET-----TSCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred CCcCCCcceEc-CCCCEEEEEcCCCEEEEECC-----CccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 22247789995 88998888888899999997 577777776555689999994 56555543
No 305
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.72 E-value=1.2e-06 Score=72.69 Aligned_cols=160 Identities=12% Similarity=-0.003 Sum_probs=108.1
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceecc
Q 013436 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 206 (443)
+..+++++|++++++.+....|..|.++.................-.+..|+.....+|++..||++.|||++.......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 78899999999999999999999999876532222222333333456788999999999999999999999987654322
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEeCCCC--EEEEEecCCeEEEEECCCCeeeEEeec-------cCC-CeEEEE
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILA-------HTS-DVNTVC 276 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~-~v~~i~ 276 (443)
..... ...|.+.+..+.|++.|. +|+..-.-+.+.+.|+++++..+.+.. |.. .|..-+
T Consensus 241 ~~sst-----------rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~ 309 (344)
T KOG4532|consen 241 EISST-----------RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN 309 (344)
T ss_pred hhccc-----------CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc
Confidence 22111 123778999999998663 455554567899999999876554432 222 366777
Q ss_pred EeCCCCCEEEEeeCCCeEEEEec
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDR 299 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~ 299 (443)
|+ .++..+.+.+.+ .+.-|++
T Consensus 310 f~-~~n~s~~v~~e~-~~ae~ni 330 (344)
T KOG4532|consen 310 FN-NENESNDVKNEL-QGAEYNI 330 (344)
T ss_pred cc-CCCcccccccch-hhheeec
Confidence 76 444444444443 2334444
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.71 E-value=4.3e-07 Score=87.46 Aligned_cols=185 Identities=14% Similarity=0.199 Sum_probs=128.7
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 013436 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (443)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 259 (443)
++..++.|+....+..+|+++.+.......... +|.-+. .+++.+.+|...|+|.+-|.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~----------------~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~ 207 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS----------------GVTIMR--YNNRNLFCGDTRGTVFLRDPNSF 207 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCC----------------ceEEEE--ecCcEEEeecccceEEeecCCcC
Confidence 345677777777788889888776655543321 344343 36899999999999999999999
Q ss_pred eeeEEeeccCCCeEEEEEeCCCCCEEEEeeC---------CCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC-CC
Q 013436 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSD---------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GR 329 (443)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 329 (443)
+.+.++.+|.+.|..+.. .|++|++++. |.-|+|||+| ..+.+..+.-+.++ .-+.|+|. ..
T Consensus 208 ~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLR----mmral~PI~~~~~P-~flrf~Psl~t 279 (1118)
T KOG1275|consen 208 ETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLR----MMRALSPIQFPYGP-QFLRFHPSLTT 279 (1118)
T ss_pred ceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhh----hhhccCCcccccCc-hhhhhcccccc
Confidence 999999999999988866 4788888874 5568999999 44444433333332 55678885 35
Q ss_pred EEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCC
Q 013436 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (443)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 409 (443)
.+++++..|...+-|..+... .....+.-+.....+ ...++|+.
T Consensus 280 ~~~V~S~sGq~q~vd~~~lsN--------------------------------P~~~~~~v~p~~s~i----~~fDiSsn 323 (1118)
T KOG1275|consen 280 RLAVTSQSGQFQFVDTATLSN--------------------------------PPAGVKMVNPNGSGI----SAFDISSN 323 (1118)
T ss_pred eEEEEecccceeeccccccCC--------------------------------CccceeEEccCCCcc----eeEEecCC
Confidence 678888889999999544221 111222222221222 23346778
Q ss_pred ccEEEEeeCCCeEEEEE
Q 013436 410 QKYIYTGSHDSCVYVYD 426 (443)
Q Consensus 410 ~~~l~tg~~dg~v~iwd 426 (443)
|+.++.|..+|.|.+|.
T Consensus 324 ~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 324 GDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CceEEEecccCcEeeec
Confidence 99999999999999997
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=3.2e-08 Score=58.63 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=34.5
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd 152 (443)
+...+.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3467899999999999999999999999999999997
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=1.9e-06 Score=81.71 Aligned_cols=216 Identities=12% Similarity=0.038 Sum_probs=146.7
Q ss_pred eecccccCCCccccCCCCceEEEEECCCC------------CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEE
Q 013436 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADG------------SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 175 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~------------~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i 175 (443)
+-+....+..+.++.|...|+.+.|.|-. -+||++...|.|.+||...+..+. ....+..++.++
T Consensus 39 VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl 115 (1062)
T KOG1912|consen 39 VVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDL 115 (1062)
T ss_pred EEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhhe
Confidence 33444556677889999999999999742 257777788999999998874443 355667788999
Q ss_pred EECC---CC-CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCe
Q 013436 176 SLSP---DQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDC 250 (443)
Q Consensus 176 ~~s~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~ 250 (443)
+|-+ +. ..|++-.....|.+|+..+|+..-...... ....|+.+.| |.+.+..-+..|.
T Consensus 116 ~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~----------------~iLs~f~~DPfd~rh~~~l~s~g~ 179 (1062)
T KOG1912|consen 116 CWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH----------------EILSCFRVDPFDSRHFCVLGSKGF 179 (1062)
T ss_pred eeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC----------------cceeeeeeCCCCcceEEEEccCce
Confidence 9876 33 466666777899999999997654332211 1466688888 6677777777887
Q ss_pred EEEEECCC-------CeeeEEeeccCC----------------C---------eEEEEEeCCCCCEEEEeeCCCeEEEEe
Q 013436 251 IYVYDLEA-------NKLSLRILAHTS----------------D---------VNTVCFGDESGHLIYSGSDDNLCKVWD 298 (443)
Q Consensus 251 i~iwd~~~-------~~~~~~~~~~~~----------------~---------v~~i~~~~~~~~~l~~~~~d~~i~iwd 298 (443)
|.+-+.-. ++..+.-..|.+ . .-.++|+|.-.+.+ .......+.++|
T Consensus 180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~~prellv~d 258 (1062)
T KOG1912|consen 180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FITFPRELLVFD 258 (1062)
T ss_pred EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEEeccceEEEc
Confidence 77776422 122222112211 0 11245564333433 345667899999
Q ss_pred cccCCCCCceeeeecCCCCCeEEEEECCCC--CEEEEEeCCCCEEEEeCCC
Q 013436 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~ 347 (443)
+. -..++....-..+.+..+.|-|++ ..|.+.-.||.+.+|--+.
T Consensus 259 le----~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 259 LE----YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ch----hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 97 667777776667777788888765 4688999999999997655
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=1.7e-08 Score=96.46 Aligned_cols=200 Identities=17% Similarity=0.181 Sum_probs=136.4
Q ss_pred ecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEE
Q 013436 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (443)
Q Consensus 164 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 243 (443)
..+.+....+|++|+-+.++|++|+..|.|+++++.+|......+ .|..+|+-+.-+.+|..++
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n----------------cH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN----------------CHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc----------------ccccccccccccCCcceee
Confidence 455677789999999999999999999999999999997654433 5777999999999998877
Q ss_pred EEecCC--eEEEEECCC-CeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee-c---CCC
Q 013436 244 AGSSDD--CIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-M---GHL 316 (443)
Q Consensus 244 ~~~~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~---~~~ 316 (443)
+.+... -..+|++.+ +.....+. .-.++.|+ ..-..-+.|+......+||+. ++.++.++ . +..
T Consensus 1160 tsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFs-n~~q~r~~gt~~d~a~~YDvq----T~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFS-NSLQFRALGTEADDALLYDVQ----TCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred eeccccCchHHHhccccccCcccccc----ccceeehh-hhHHHHHhcccccceEEEecc----cCcHHHHhcCcchhhh
Confidence 765543 367899865 33444443 24577886 444444455555678999998 55555442 2 222
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeee
Q 013436 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (443)
..-+...|+|+..+++ .|| .+||+|..+.+..+. ...
T Consensus 1231 y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD----------------------------------~ft---- 1267 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFD----------------------------------QFT---- 1267 (1516)
T ss_pred hhccccccCCCcceEe---eCc--eeeeeccHHHHhhhh----------------------------------hhe----
Confidence 3346788999887665 355 789999865433331 111
Q ss_pred eeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhHHh
Q 013436 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQSL 439 (443)
Q Consensus 397 ~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~~~ 439 (443)
..-.-.|.|.|.-++.-++ |||++|-++++.+..+
T Consensus 1268 ---~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1268 ---DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred ---ecccccccCCCceEEeech-----hhhhHHHHHHhcCccc
Confidence 0011135557877776654 8888888887766543
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=2.1e-06 Score=81.79 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=98.7
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC-----CCeEEEEECCCeEEEEECCCCceeccccc
Q 013436 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----QRHLVYASMSPIVHIVDVGSGTMESLANV 209 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 209 (443)
+|.++++|+.||+|.|-.+.+++..... ....++.+++++|+ .+.+++|+.-| +.++.-+=-...... .
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~----df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~ 155 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQY----DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-V 155 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeE----ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-e
Confidence 5999999999999999999887555432 23346999999998 56899999988 777642211100000 0
Q ss_pred eecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCC------eEEEEEeCCCCC
Q 013436 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD------VNTVCFGDESGH 283 (443)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------v~~i~~~~~~~~ 283 (443)
.. ...++|.++.|. |+++|-++.+| |++||+.+++.+..+...... ...+.|. +..
T Consensus 156 l~-------------~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~--~~~ 217 (846)
T KOG2066|consen 156 LS-------------EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ--DED 217 (846)
T ss_pred ee-------------cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec--CCC
Confidence 11 123489999995 89999999888 999999998877766533332 3456774 445
Q ss_pred EEEEeeCCCeEEEEecc
Q 013436 284 LIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~ 300 (443)
.++.|-.| +|+|..++
T Consensus 218 ~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 218 RLVIGWGD-SVKICSIK 233 (846)
T ss_pred eEEEecCC-eEEEEEEe
Confidence 66666555 78888887
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.68 E-value=1.2e-05 Score=69.99 Aligned_cols=189 Identities=16% Similarity=0.121 Sum_probs=118.4
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccc-cceec
Q 013436 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NVTEI 212 (443)
Q Consensus 134 ~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~ 212 (443)
+++..+++++.++.|..||..+|+.+............ . ..++..+++++.++.|..+|..+++..-.. .....
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce----e-eecccccccccceeeeEecccCCcceeeeecccccc
Confidence 35667777789999999999999776655443322222 1 224566777778889999999999875442 11100
Q ss_pred ccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCC----------eEEEEEeCCCC
Q 013436 213 HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD----------VNTVCFGDESG 282 (443)
Q Consensus 213 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v~~i~~~~~~~ 282 (443)
.. . .........++..++++..++.|..+|+++|+.+......... +..-... .++
T Consensus 109 ~~-----------~--~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 174 (238)
T PF13360_consen 109 PA-----------G--VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG 174 (238)
T ss_dssp TC-----------S--TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT
T ss_pred cc-----------c--cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC
Confidence 00 0 0111122223778888888999999999999988877653322 1122222 334
Q ss_pred CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 283 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
.++.++.++.+..+|+. +++.+.... ...+..+ ...++..|+.++.++.|..||+++++
T Consensus 175 -~v~~~~~~g~~~~~d~~----tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 175 -RVYVSSGDGRVVAVDLA----TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EEEEECCTSSEEEEETT----TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred -EEEEEcCCCeEEEEECC----CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 66677777753334988 666554332 2233331 34567778877799999999999854
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.7e-05 Score=76.34 Aligned_cols=206 Identities=11% Similarity=0.078 Sum_probs=126.9
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccce-EEEEEECCCCCeEEEEECCC-----eEEEEECCCCcee
Q 013436 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT-VTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTME 204 (443)
Q Consensus 131 ~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-v~~i~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 204 (443)
+|++.+..+|.|+.+|.|.+.+-.- ..-. ....+... |..+-.-.+..+|++.+.|+ .|+||+++..+..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~--~~~~--~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF--QLIR--GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc--eeee--hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 5788899999999999888876432 2211 12222223 44443333446788777665 5999999765321
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEE--CCC--CeeeEEeeccCCCeEEEEEeCC
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD--LEA--NKLSLRILAHTSDVNTVCFGDE 280 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd--~~~--~~~~~~~~~~~~~v~~i~~~~~ 280 (443)
........+ ............++.+++.+.+-+.+|+|-.+|.|..+. +.. +....-......+|+.+.+. .
T Consensus 106 ~sP~c~~~~---ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~-~ 181 (933)
T KOG2114|consen 106 NSPQCLYEH---RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR-S 181 (933)
T ss_pred CCcceeeee---eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe-c
Confidence 111111000 000001112344889999999999999999999999884 211 11112222446799999997 6
Q ss_pred CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 281 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
++..++.......|.+|.+.. .......+..|..+++|.++++....|++++. ..+.+||....
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~g---r~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSG---RTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred CCceeEEEEecceeEEEEecC---CCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCc
Confidence 666533333445799999861 22234457778889999999976654666654 46999998863
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=5.9e-07 Score=85.43 Aligned_cols=183 Identities=14% Similarity=0.172 Sum_probs=128.5
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
...++|++++ +++|+-|..+|.|++++....- .. ...|... ..+|.++++|+.||.|.|-.+.+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~---~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KT---NFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--cc---ccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 3457777776 6799999999999999987541 11 2223221 55799999999999999999888776
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCC-----CCEEEEEecCCeEEEEECC--CCeeeEEeeccCCCeEEEE
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----GRELVAGSSDDCIYVYDLE--ANKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-----~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~ 276 (443)
.....+.. ++.+++++|+ .+.+++|+..| +.++.-+ ..+....+....++|.+++
T Consensus 106 ~~~~df~r-----------------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~ 167 (846)
T KOG2066|consen 106 ITQYDFKR-----------------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK 167 (846)
T ss_pred ceeEecCC-----------------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE
Confidence 55444333 7999999997 56899999998 7776532 1122224556788999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCC------eEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG------ITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
|. |+++|-++.+| |++||+. ..+.+..+...... -..+.|.++.+ |+.| ...+|+|..++.
T Consensus 168 W~---g~lIAWand~G-v~vyd~~----~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 168 WR---GNLIAWANDDG-VKVYDTP----TRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK 234 (846)
T ss_pred ec---CcEEEEecCCC-cEEEecc----ccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence 96 78898888776 8999997 55555544432222 34577776654 4443 445799998884
No 314
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.65 E-value=2.3e-05 Score=67.20 Aligned_cols=212 Identities=14% Similarity=0.149 Sum_probs=119.1
Q ss_pred CccccCCCCceEEEEECCCCC-EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~-~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
.+.+.+....+..++|+|+.+ ++++....+.|..++.+ |+.+.+. ...+. +..-.|++..++.++++.-+++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-PLDGF-GDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-E-SS--SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-eCCCC-CCceeEEEECCCEEEEEEcCCCcEEE
Confidence 345667777899999999755 66667777888888875 5555543 34332 34788999888877766667899999
Q ss_pred EECCCCcee-ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCC---CeeeEEe------
Q 013436 196 VDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLRI------ 265 (443)
Q Consensus 196 wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~------ 265 (443)
+++...... ........ .......+..++..++|.|.++.|+++-+..-..+|.++. ...+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~------~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKI------SLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp EEE----TT--EEEEEEE------E---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred EEEeccccccchhhceEE------ecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 998543211 11111110 0001112344688999999888888887776666666543 2111111
Q ss_pred --eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC---------CCeEEEEECCCCCEEEEE
Q 013436 266 --LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---------EGITFIDSRGDGRYLISN 334 (443)
Q Consensus 266 --~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~ 334 (443)
......+.++.++|..+++++.+..+..|..+|. .++++..+.-.. ...-.|+|.++|++.+++
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-----~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-----QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-----T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEECC-----CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 1234567899999889999999999999999995 566665443221 356789999999766665
Q ss_pred eCCCCEEEE
Q 013436 335 GKDQAIKLW 343 (443)
Q Consensus 335 ~~dg~i~iw 343 (443)
.-+..+++
T Consensus 240 -EpNlfy~f 247 (248)
T PF06977_consen 240 -EPNLFYRF 247 (248)
T ss_dssp -TTTEEEEE
T ss_pred -CCceEEEe
Confidence 44444443
No 315
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1.8e-06 Score=81.11 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=112.9
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
|...|.--+++..+++++.|+..|.+++|+-..+..... ...+..+.+..+..|++..++|.|+..|.|.++-++...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 345566667888899999999999999999887633221 222344557778889999999999999999999887644
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC----eeeEEeeccCCCeEEEEEe
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFG 278 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~ 278 (443)
......+ ...+..|+..|++++|++++..+++|...|.|..-.+.+. ...+.+....+.|..+.+.
T Consensus 110 p~~~~~~----------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 110 PRDLDYV----------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CCcceee----------ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 3222222 2223347789999999999999999999999998888762 1223344556777777774
Q ss_pred CCCCCEEEEeeCCCeEEEEecc
Q 013436 279 DESGHLIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~ 300 (443)
.+.+|++...- ..+++..
T Consensus 180 --q~~LLVStl~r--~~Lc~tE 197 (726)
T KOG3621|consen 180 --QSYLLVSTLTR--CILCQTE 197 (726)
T ss_pred --cceehHhhhhh--hheeecc
Confidence 44455444432 3344443
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.62 E-value=1.3e-06 Score=84.22 Aligned_cols=186 Identities=16% Similarity=0.131 Sum_probs=132.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceeccc
Q 013436 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (443)
++..++.|+....+..+|+.+.+........ ...|+-+.. +++++.+|...|+|.+-|.++.+.+..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~---a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS---ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------ 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc---CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee------
Confidence 3456777777777888999887544432221 112555544 67899999999999999998877654433
Q ss_pred CceeeccCCCCceecEEEEEEeCCCCEEEEEecC---------CeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEE
Q 013436 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 285 (443)
.|++.|.++.. .|+.|++++.. .-|+|||++..+.+..+.-+.++ .-+.|+|.-...+
T Consensus 215 ----------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 215 ----------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRL 281 (1118)
T ss_pred ----------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceE
Confidence 36667776655 58889988754 45899999988766655444433 4567777777889
Q ss_pred EEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 286 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
++++..|...+-|..........+..+......+..++++++++.|+.+..+|.|.+|-
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99999999999995432212122333334455699999999999999999999999997
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.60 E-value=1.3e-06 Score=80.90 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=64.7
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 201 (443)
.+.+.|.|++++|+.+.|+.|+.||.|.+||...+..... ...-.++.++|+|+|..+++|+..|.+++||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 5688999999999999999999999999999987632221 22234788999999999999999999999998765
Q ss_pred ce
Q 013436 202 TM 203 (443)
Q Consensus 202 ~~ 203 (443)
..
T Consensus 332 pi 333 (545)
T PF11768_consen 332 PI 333 (545)
T ss_pred cc
Confidence 44
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=7.1e-06 Score=72.11 Aligned_cols=154 Identities=15% Similarity=0.090 Sum_probs=95.3
Q ss_pred ccccCCCCceEEEEECCCCC-EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC-eEEEEECCCeEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHI 195 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~-~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~i 195 (443)
+.+.+|...|..++|||... ++..++.+..|+|.|+++...+..... + ..+.+++|.-|.. ++..|-..|.|.|
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a---~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA---Y-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec---c-CCceeeeeccCCcceeEEeccCceEEE
Confidence 35567888999999999887 788899999999999999755543322 2 4699999998765 5556668899999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEE------eCCCCEEEEEecCCeEEEEECCC--CeeeEEee-
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF------STDGRELVAGSSDDCIYVYDLEA--NKLSLRIL- 266 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~------~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~- 266 (443)
||++..+........... ..+|..++. .+.|.+++..+.+ +..|.+.- +.....+.
T Consensus 263 yD~R~~~~~~~e~~a~~t-------------~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVT-------------INPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred EEccCCCchHhhhhhhhc-------------cCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc
Confidence 999876543221111110 013333332 2334444444433 55665432 22222222
Q ss_pred ccCCCeEEEEEeCCCCCEEEEeeC
Q 013436 267 AHTSDVNTVCFGDESGHLIYSGSD 290 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~~~~~ 290 (443)
...+.+.++.+.+.....+++.-.
T Consensus 328 e~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred CCCcceeeeeecCccceEEEEecC
Confidence 345667777777555666666544
No 319
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.54 E-value=1.9e-06 Score=73.03 Aligned_cols=209 Identities=17% Similarity=0.230 Sum_probs=134.0
Q ss_pred CCceEEEEECCCC--CEEEEEECCCeEEEEECCCCe-------------------------------------EE---EE
Q 013436 124 TSRAYVSQFSADG--SLFVAGFQASQIRIYDVERGW-------------------------------------KI---QK 161 (443)
Q Consensus 124 ~~~v~~~~~s~~~--~~l~~g~~d~~i~iwd~~~~~-------------------------------------~~---~~ 161 (443)
...|..+.|..++ ..++..+.|.+|++|.+.... .+ ..
T Consensus 85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~ 164 (460)
T COG5170 85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC 164 (460)
T ss_pred HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence 4568888888765 346666789999999875320 00 01
Q ss_pred eeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC-C
Q 013436 162 DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-R 240 (443)
Q Consensus 162 ~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~ 240 (443)
......|..-+.++.|+.|...++++ .|=.|.+|++.-... .+++.... +.....-..-|++..|+|.. .
T Consensus 165 rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~--sFnIVDiK------P~nmeeLteVItSaeFhp~~cn 235 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDG--SFNIVDIK------PHNMEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eeccccceeEeeeeeecCchheeeec-cceeeeeccccccCC--ceEEEecc------CccHHHHHHHHhhcccCHhHcc
Confidence 11224677778999999998877775 455788998764321 11111111 00011122357888999944 5
Q ss_pred EEEEEecCCeEEEEECCCCeee------EE----------eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC
Q 013436 241 ELVAGSSDDCIYVYDLEANKLS------LR----------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 304 (443)
Q Consensus 241 ~l~~~~~dg~i~iwd~~~~~~~------~~----------~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 304 (443)
.+.-.+..|.|++-|+++.... .. +..-...|..+.|+ ++|+++++-+. -+|++||++.
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs-~ngryIlsRdy-ltvkiwDvnm--- 310 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFS-DNGRYILSRDY-LTVKIWDVNM--- 310 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEc-CCCcEEEEecc-ceEEEEeccc---
Confidence 6677778999999999854211 00 11224568889997 88988876554 4899999984
Q ss_pred CCceeeeecCCC------------CCe---EEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 305 KGKPAGVLMGHL------------EGI---TFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 305 ~~~~~~~~~~~~------------~~v---~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
...++.++.-|. ..| ..+.|+.|...+.+|+..+..-+|-..
T Consensus 311 ~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 311 AKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 445666554332 222 247788888899999888877777643
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.52 E-value=4.6e-05 Score=71.66 Aligned_cols=188 Identities=11% Similarity=0.002 Sum_probs=111.3
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEE-----EEEECC--CCCeEEEEECCCeEEEEECCCCceecccc
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-----DTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~-----~i~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 208 (443)
+..+++++.++.+.-+|..+|+.+-+....... .... .+.-.| ++..++.++.++.+..+|.++++..-...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKD-GWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc-cccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 567777888899999999998766553322210 0000 000111 35567788899999999999998765444
Q ss_pred ceecccCceeeccCCCCceecEEE-EEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCe-----EEEEEeCCCC
Q 013436 209 VTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESG 282 (443)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~i~~-l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~ 282 (443)
... .+.+ ... .+..+++++.++.|+-+|.++++.+.........+ .+.... +
T Consensus 148 ~~~-----------------~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~ 205 (394)
T PRK11138 148 VAG-----------------EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---F 205 (394)
T ss_pred CCC-----------------ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---C
Confidence 321 1111 111 24457778889999999999999887765321111 111111 2
Q ss_pred CEEEEeeCCCeEEEEecccCCCCCceeeeecCCC----C---CeEEEEECC--CCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL----E---GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 283 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~---~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
..++.++.++.+..+|.. +++.+....... . ....+..+| .+..++.++.+|.+..+|..+++.
T Consensus 206 ~~v~~~~~~g~v~a~d~~----~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLME----QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred CEEEEEcCCCEEEEEEcc----CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence 356677888999988887 555444332100 0 011111222 244666777889999999988553
No 321
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.52 E-value=0.00025 Score=62.64 Aligned_cols=249 Identities=16% Similarity=0.134 Sum_probs=136.2
Q ss_pred EEEEECCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeeecCCccc----eEEEEEECCCCCeEEEEECC--C
Q 013436 128 YVSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSLRW----TVTDTSLSPDQRHLVYASMS--P 191 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~----~v~~i~~s~~~~~l~~~~~d--g 191 (443)
-.+..|||++.++++. ..-.|.+||..+-.....+.....++. ....++++.|++++++.... .
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3467899999888743 234599999999876666555544222 12346789999998886554 4
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC-CCeeeEEee----
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRIL---- 266 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~---- 266 (443)
.|.|.|+..++........ .+..+--+++ +.|.+-+.||.+.-..+. .|+...+..
T Consensus 119 SVtVVDl~~~kvv~ei~~P------------------GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~ 179 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTP------------------GCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD 179 (342)
T ss_dssp EEEEEETTTTEEEEEEEGT------------------SEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred eEEEEECCCCceeeeecCC------------------CEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence 7999999988876544433 2222222222 347788889999888887 455443221
Q ss_pred ccCCCe-EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC----------CCCeEEEEECCCCCEEEEEe
Q 013436 267 AHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----------LEGITFIDSRGDGRYLISNG 335 (443)
Q Consensus 267 ~~~~~v-~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~s~~ 335 (443)
....++ ..-.+. ..+..++--+.+|.|+--|+.... .+....+..- .++..-+++++..+.|.+.-
T Consensus 180 ~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dlsg~~--~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 180 PDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLSGDS--AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp TTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEETTSS--EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred CCCcccccccceE-CCCCeEEEEecCCEEEEEeccCCc--ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 112222 233343 344555567889999998886221 1111222110 12233466665444443321
Q ss_pred --------CCC--CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCC
Q 013436 336 --------KDQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (443)
Q Consensus 336 --------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (443)
+|+ .|-++|+.+ .+.+.++..... +..+.
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t----------------------------------~krv~Ri~l~~~---~~Si~---- 295 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKT----------------------------------HKRVARIPLEHP---IDSIA---- 295 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTT----------------------------------TEEEEEEEEEEE---ESEEE----
T ss_pred cCCCCCCccCCceEEEEEECCC----------------------------------CeEEEEEeCCCc---cceEE----
Confidence 122 255556666 556666653221 11122
Q ss_pred ccCCc-cEEEEe-eCCCeEEEEEccChhhhhHhHHh
Q 013436 406 YSTGQ-KYIYTG-SHDSCVYVYDLVSIQILFCRQSL 439 (443)
Q Consensus 406 ~s~d~-~~l~tg-~~dg~v~iwd~~~g~~~~~~~~~ 439 (443)
.|.|. .+|++. ..++.|.+||..+|+++..++.+
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 22233 366554 46899999999999999887654
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.51 E-value=5.4e-05 Score=65.94 Aligned_cols=194 Identities=21% Similarity=0.259 Sum_probs=122.3
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEEC-----CCeEEEEECCCC-eEEEEeeecCCccceEEEEEECCCCCeEEEE
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~-----d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 187 (443)
...-+-|.+| ..||+||++|++.-. .|.|-|||...+ ..+.+ ...+.-....+.+.||++.|+++
T Consensus 46 a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E---~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 46 APPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGE---FPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeE---ecCCCcChhhEEEcCCCCEEEEE
Confidence 3445667777 479999999998643 478999999943 33332 33333335668899999888875
Q ss_pred EC------------------CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC
Q 013436 188 SM------------------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (443)
Q Consensus 188 ~~------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg 249 (443)
.. +..+...|..+++......+.. ..|...|..+++.++|..++..-..|
T Consensus 117 NGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~------------~~~~lSiRHLa~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 117 NGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP------------DLHQLSIRHLAVDGDGTVAFAMQYQG 184 (305)
T ss_pred cCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc------------cccccceeeEEecCCCcEEEEEecCC
Confidence 32 2244455555555544433321 23556899999999998666654433
Q ss_pred e-------EEEEECCCCeeeEEee-------ccCCCeEEEEEeCCCCCEE-EEeeCCCeEEEEecccCCCCCceeeeecC
Q 013436 250 C-------IYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMG 314 (443)
Q Consensus 250 ~-------i~iwd~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 314 (443)
. |.+++.. +.+..+. .-...+-+|+++ .++.++ +++-..+.+.+||.. ++..+....
T Consensus 185 ~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~~~~~d~~----tg~~~~~~~- 256 (305)
T PF07433_consen 185 DPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAAD-RDGRLIAVTSPRGGRVAVWDAA----TGRLLGSVP- 256 (305)
T ss_pred CCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEe-CCCCEEEEECCCCCEEEEEECC----CCCEeeccc-
Confidence 2 4444432 2222222 234678999998 666655 555577899999998 777776553
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCC
Q 013436 315 HLEGITFIDSRGDGRYLISNGKDQA 339 (443)
Q Consensus 315 ~~~~v~~~~~~~~~~~l~s~~~dg~ 339 (443)
-..+..++-.+++ ++++.+. |.
T Consensus 257 -l~D~cGva~~~~~-f~~ssG~-G~ 278 (305)
T PF07433_consen 257 -LPDACGVAPTDDG-FLVSSGQ-GQ 278 (305)
T ss_pred -cCceeeeeecCCc-eEEeCCC-cc
Confidence 3456777777776 5555544 44
No 323
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.47 E-value=5.8e-05 Score=70.99 Aligned_cols=234 Identities=13% Similarity=0.073 Sum_probs=135.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEE-EEECCCCCeEEEEECCCeEEEEECCCCceeccccceecc
Q 013436 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 213 (443)
++..++.++.++.+..+|.++|+.+-+..... .+.+ ... .+..++++..++.+..+|..+++..-........
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG----EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC----ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 35567778889999999999986655432221 1211 111 2446777888999999999999875444322100
Q ss_pred cCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCC-------CeEEEEEeC-CCCCEE
Q 013436 214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-------DVNTVCFGD-ESGHLI 285 (443)
Q Consensus 214 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~i~~~~-~~~~~l 285 (443)
.. ..+...++ . .+..++.++.+|.+..+|..+++.+........ ....+..+| -.+..+
T Consensus 193 --~~-----~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v 259 (394)
T PRK11138 193 --LT-----LRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV 259 (394)
T ss_pred --cc-----ccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEE
Confidence 00 00001111 1 123577778899999999999886655431110 001111111 124467
Q ss_pred EEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCccc
Q 013436 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (443)
Q Consensus 286 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (443)
+.++.+|.+..+|.. +++.+....- .....+.. .+..++.++.+|.+..+|..+++.+.....
T Consensus 260 y~~~~~g~l~ald~~----tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--------- 322 (394)
T PRK11138 260 YALAYNGNLVALDLR----SGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSD--------- 322 (394)
T ss_pred EEEEcCCeEEEEECC----CCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccc---------
Confidence 777889999999998 6666544321 11112222 455677778899999999988543322110
Q ss_pred ccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
. .+. ...+|.. .+.+|+.++.||.|++.|..+|+.+...
T Consensus 323 ----------------------~-~~~-------~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 323 ----------------------L-LHR-------LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred ----------------------c-CCC-------cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 0 000 0011111 2456788899999999999999876543
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.45 E-value=1.1e-05 Score=74.74 Aligned_cols=112 Identities=18% Similarity=0.207 Sum_probs=78.9
Q ss_pred EEEEEEeC-CCCEEEEE----ecCCe----EEEEECCCCeeeE--E-eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEE
Q 013436 230 IFSLKFST-DGRELVAG----SSDDC----IYVYDLEANKLSL--R-ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 297 (443)
Q Consensus 230 i~~l~~~~-~~~~l~~~----~~dg~----i~iwd~~~~~~~~--~-~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iw 297 (443)
..++.|+- +...+.+. +.+|. -.+|++..++... . -....+.|.+++++ ++...++.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~s-p~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARS-PSEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecC-cccceEEEEecCCeEEEE
Confidence 34566665 34444443 22332 4567766554221 1 11567889999997 888899999999999999
Q ss_pred ecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
|.. .+ +..+....-..+.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 287 D~~----~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTT----RG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcC----CC--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 986 33 2223334456789999999999999999999999998753
No 325
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.43 E-value=0.00013 Score=68.40 Aligned_cols=231 Identities=16% Similarity=0.101 Sum_probs=118.7
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
.-....+.++|+|++++++ .||...|+......... .+......|.+.+ .+|+-.....|.|+.--....
T Consensus 32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--------~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--------FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--------EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T
T ss_pred CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--------cCceeEEEEecCc-cEEEEECCCeEEEEEcCcccc
Confidence 3346789999999999995 67888999855442221 1235567899844 577777788899974322221
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (443)
........ .+..+-. |..|+..+.+ .|.+||+++++.+.++... +|..+.|+ +++.
T Consensus 102 ~k~i~~~~-----------------~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws-~~g~ 157 (443)
T PF04053_consen 102 VKSIKLPF-----------------SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS-DDGE 157 (443)
T ss_dssp T-----SS------------------EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE--TTSS
T ss_pred ceEEcCCc-----------------ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE-CCCC
Confidence 11111110 2333322 7777776544 8999999999999988643 38999998 8888
Q ss_pred EEEEeeCCCeEEEEecccC-----CCCC--ceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCC
Q 013436 284 LIYSGSDDNLCKVWDRRCL-----NVKG--KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~~~-----~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (443)
+++..+.+ .+.+++.... ...+ .....+......|.+..|..+ .++-.+.. .++- +.++
T Consensus 158 ~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~G-------- 223 (443)
T PF04053_consen 158 LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNG-------- 223 (443)
T ss_dssp EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETT--------
T ss_pred EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcC--------
Confidence 88888766 6777776411 0000 133333332567888888755 44444443 5655 3221
Q ss_pred cccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhH
Q 013436 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFC 435 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~ 435 (443)
...++..-.....+++ +.|..+.++....|+.|..+.+....+.+.
T Consensus 224 ---------------------------e~~~i~~ld~~~yllg------y~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk 269 (443)
T PF04053_consen 224 ---------------------------ETGIIAHLDKPLYLLG------YLPKENRLYLIDRDGNVISYELDLSELEFK 269 (443)
T ss_dssp ---------------------------EEEEEEE-SS--EEEE------EETTTTEEEEE-TT--EEEEE--HHHHHHH
T ss_pred ---------------------------CcceEEEcCCceEEEE------EEccCCEEEEEECCCCEEEEEECHHHHHHH
Confidence 1122221122223332 333567888888999999998876555443
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.42 E-value=7e-08 Score=89.25 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=133.3
Q ss_pred CceEEEEECCCC--CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC-CCeEEEEE----CCCeEEEEE
Q 013436 125 SRAYVSQFSADG--SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYAS----MSPIVHIVD 197 (443)
Q Consensus 125 ~~v~~~~~s~~~--~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~----~dg~i~iwd 197 (443)
.-+.|++++-+. .++++|..+|.|.+-.+...... ......++..++++++|++- .+.||+|- .|..+.|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 357788877654 47889999999999887654222 12234566778999999984 55666653 345799999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
+.++-..... ...|.. +.-....+++|..+.+.+.+|.....+.++|++..... ...-.+..+..+.+
T Consensus 136 i~s~ltvPke-------~~~fs~----~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 136 INSLLTVPKE-------SPLFSS----STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITV 203 (783)
T ss_pred cccccCCCcc-------cccccc----ccccCccccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhccccee
Confidence 9887321111 011111 11224558888888899999999989999999854211 11123445667778
Q ss_pred eCCCCCEEEEeeCCCeEEEEe-cccCCCCCceeeeecCCC----CCeEEEEECCCCC-EEEEEeC-CCCEEEEeCCCC
Q 013436 278 GDESGHLIYSGSDDNLCKVWD-RRCLNVKGKPAGVLMGHL----EGITFIDSRGDGR-YLISNGK-DQAIKLWDIRKM 348 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~-~l~s~~~-dg~i~iwd~~~~ 348 (443)
.|-.++++++-. ||.|.+|| .+. -..++..+.... ..+..++|.|... .+++... .++|+++|+...
T Consensus 204 dp~~~nY~cs~~-dg~iAiwD~~rn---ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-DGDIAIWDTYRN---IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred cCCCCCceeccc-cCceeeccchhh---hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 766888887665 99999999 441 122332222222 2489999999532 3445444 578999998763
No 327
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=9.3e-06 Score=71.39 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=83.5
Q ss_pred ceecEEEEEEeCCCC-EEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC
Q 013436 226 YSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 304 (443)
Q Consensus 226 ~~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 304 (443)
+...|.+++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-.+.++|+.|..+|.|.|||+|..
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~-- 268 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP-- 268 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC--
Confidence 445799999999666 7888999999999999999988888877 789999997677889999999999999999942
Q ss_pred CCceeeeecC--CCCCeEEEE------ECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 305 KGKPAGVLMG--HLEGITFID------SRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 305 ~~~~~~~~~~--~~~~v~~~~------~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
..++..+.+ ...+|..++ ..+.|.+|+....+ +..|++..
T Consensus 269 -~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~ 316 (463)
T KOG1645|consen 269 -EGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVF 316 (463)
T ss_pred -CchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhc
Confidence 223333322 122344333 22334555555443 56676654
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.39 E-value=0.00012 Score=73.37 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=106.2
Q ss_pred cceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC
Q 013436 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (443)
Q Consensus 169 ~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 248 (443)
...|.++.|..+...++.+...|.|.+-|..+......-.+.. +|.+++|+||+..++..+..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~-----------------GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDN-----------------GISAASWSPDEELLALITGR 130 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccC-----------------ceEEEeecCCCcEEEEEeCC
Confidence 3579999999999999999999999999988876655444332 79999999999999999888
Q ss_pred CeEEEEEC----CCCeee-------------------EEeec---------------------cCCCeEEEEEeCCCCCE
Q 013436 249 DCIYVYDL----EANKLS-------------------LRILA---------------------HTSDVNTVCFGDESGHL 284 (443)
Q Consensus 249 g~i~iwd~----~~~~~~-------------------~~~~~---------------------~~~~v~~i~~~~~~~~~ 284 (443)
+++.+-+- -.-+.+ ..+.+ -.+.-++|+|- .+|.+
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~ 209 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEY 209 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcE
Confidence 87766432 000100 11111 11123468995 88999
Q ss_pred EEEee-----CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe---CCCCEEEEeCCC
Q 013436 285 IYSGS-----DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG---KDQAIKLWDIRK 347 (443)
Q Consensus 285 l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~dg~i~iwd~~~ 347 (443)
+++.. ....|++||.. +..-..-....+.-.+++|-|.|..+++-. .|+.|.++.-+.
T Consensus 210 fAVs~~~~~~~~RkirV~drE-----g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 210 FAVSFVESETGTRKIRVYDRE-----GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred EEEEEEeccCCceeEEEeccc-----chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence 98832 33799999975 221111112223345799999999988654 366799987654
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=1.1e-05 Score=77.46 Aligned_cols=109 Identities=15% Similarity=0.235 Sum_probs=82.7
Q ss_pred EEEEECCCCCEEEEEEC----CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 128 YVSQFSADGSLFVAGFQ----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
+-..|+|...++|+++- .|.|.||- ++|+. .......- .+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEP-qr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEP-QRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCC-Ccccccce---ehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 34578999998888763 57888884 45542 22122222 267799999998999999999999999877654
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~ 257 (443)
..... .|..+|..+.||++|..++++..-|.|.+|...
T Consensus 94 htv~~----------------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVE----------------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeecc----------------CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 33221 377799999999999999999999999999765
No 330
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.24 E-value=0.00069 Score=56.59 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=94.1
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccC
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (443)
..+++.|+..+.+.--|..+|..+.+..... .+.+-+.- -|++++.|+..|.+++.+.+++.....+...+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~----RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-- 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV----RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-- 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc----eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence 4678889999999999999986555433221 12222211 3678999999999999999999655444333211
Q ss_pred ceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEE
Q 013436 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (443)
Q Consensus 216 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~ 295 (443)
.+ .....+++..+..|+.|+..+..|.++..++.+.+...+...+-+.. +....|+.+...|.+.
T Consensus 96 -------------k~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~-~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 96 -------------KV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIA-PGDGSLYAAITAGAVL 160 (354)
T ss_pred -------------cc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceec-CCCceEEEEeccceEE
Confidence 11 23456689999999999999999999999888876544444445554 3333444555555554
Q ss_pred EEec
Q 013436 296 VWDR 299 (443)
Q Consensus 296 iwd~ 299 (443)
--..
T Consensus 161 avt~ 164 (354)
T KOG4649|consen 161 AVTK 164 (354)
T ss_pred EEcc
Confidence 4333
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.24 E-value=0.00064 Score=62.98 Aligned_cols=213 Identities=14% Similarity=0.149 Sum_probs=120.1
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEE----------------------------------------EEeeec
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI----------------------------------------QKDILA 165 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~----------------------------------------~~~~~~ 165 (443)
.|+.+.|+++..-|++|...|.|.||.....+.- ......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999999999999999999875432111 111112
Q ss_pred CCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-----CC-
Q 013436 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DG- 239 (443)
Q Consensus 166 ~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-----~~- 239 (443)
....++|++++.| |=-++|+|..+|.+.|.|++....+....+.+.. ........++++.|.- |+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~--------~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESF--------LSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG----------T-SS----EEEEEEEEEE-TTSSS
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccc--------cccccccCeeEEEEEEEecCCCcc
Confidence 2335689999987 4458999999999999999888776554444300 0111233677788863 33
Q ss_pred --CEEEEEecCCeEEEEECC--C-Cee----eEEeeccCCCeEEEEEe-CCCC-------------------CEEEEeeC
Q 013436 240 --RELVAGSSDDCIYVYDLE--A-NKL----SLRILAHTSDVNTVCFG-DESG-------------------HLIYSGSD 290 (443)
Q Consensus 240 --~~l~~~~~dg~i~iwd~~--~-~~~----~~~~~~~~~~v~~i~~~-~~~~-------------------~~l~~~~~ 290 (443)
-.+++|++.|.+.+|.+. . +.. ......+.++|..|... ...+ +-++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 478899999999999764 1 211 11222455666666532 1111 12333444
Q ss_pred CCeEEEEecccCCCCCceeeeecCCCCCeEEEEE-----CCCCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 291 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS-----RGDGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 291 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
+..++++... ..+..+...........+.+ ...+..|++-..+|.|+++.+...+.+
T Consensus 234 e~~irv~~~~----~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 234 ESDIRVFKPP----KSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp SSEEEEE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred ccceEEEeCC----CCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 6689999886 45544444322122233334 235667888899999999999885543
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.22 E-value=0.0019 Score=62.38 Aligned_cols=201 Identities=13% Similarity=0.123 Sum_probs=114.4
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCC---ccceEE--EEEECCCCCeEEEEECCCeEEEEECCCCceeccccce
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKS---LRWTVT--DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~--~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 210 (443)
+..++.++.++.|.-.|..+|+.+-+...... ....+. .+... ++..++.++.++.|.-+|.++++..-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44566777789999999999866544322211 000010 01111 2267888889999999999999876544332
Q ss_pred ecccCceeeccCCCCceecEE-EEEEeCCCCEEEEEe---------cCCeEEEEECCCCeeeEEeeccCCC---------
Q 013436 211 EIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGS---------SDDCIYVYDLEANKLSLRILAHTSD--------- 271 (443)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~--------- 271 (443)
.... ....+. ...+. +..++.++ .+|.|+-+|..+++.+-........
T Consensus 140 ~~~~-----------~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~ 206 (488)
T cd00216 140 DQVP-----------PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGP 206 (488)
T ss_pred CCcC-----------cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCC
Confidence 2100 000010 11111 23455543 3688999999999887766532110
Q ss_pred -----------e-EEEEEeCCCCCEEEEeeCCC------------------eEEEEecccCCCCCceeeeecCCCCCeE-
Q 013436 272 -----------V-NTVCFGDESGHLIYSGSDDN------------------LCKVWDRRCLNVKGKPAGVLMGHLEGIT- 320 (443)
Q Consensus 272 -----------v-~~i~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~~~~v~- 320 (443)
+ ...++. +.+..++.++.++ .|.-+|.. +++.+-.+..-.....
T Consensus 207 ~~~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~----tG~~~W~~~~~~~~~~~ 281 (488)
T cd00216 207 DRQMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD----TGKVKWFYQTTPHDLWD 281 (488)
T ss_pred CcceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC----CCCEEEEeeCCCCCCcc
Confidence 0 122332 3456677776655 68888887 7777766542111110
Q ss_pred -----EEEEC----CCCC---EEEEEeCCCCEEEEeCCCCCCccccC
Q 013436 321 -----FIDSR----GDGR---YLISNGKDQAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 321 -----~~~~~----~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (443)
...+. -++. .++.++.+|.+...|.++++.+....
T Consensus 282 ~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 282 YDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred cccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 00111 1333 57788889999999999998877654
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.20 E-value=0.00041 Score=64.06 Aligned_cols=218 Identities=12% Similarity=0.140 Sum_probs=112.5
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCc--------------cceEEEEEECCCCCeEEEEEC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL--------------RWTVTDTSLSPDQRHLVYASM 189 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~i~~s~~~~~l~~~~~ 189 (443)
...+....|||+|+.+|... ++.|.+++..++...+........ -..-..+.||||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999999885 588999999887443321111000 011346889999999998764
Q ss_pred CC-e---EEEEECCCCce--eccccce----------------ecccCc--eeecc-CCCCceecEEEEEEeCCCCEEEE
Q 013436 190 SP-I---VHIVDVGSGTM--ESLANVT----------------EIHDGL--DFSAA-DDGGYSFGIFSLKFSTDGRELVA 244 (443)
Q Consensus 190 dg-~---i~iwd~~~~~~--~~~~~~~----------------~~~~~~--~~~~~-~~~~~~~~i~~l~~~~~~~~l~~ 244 (443)
|. . +.+-+...... ....... ....+. ..... ........+..+.|.+++..|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 42 2 22222222210 0000000 000000 00000 00112346889999999984444
Q ss_pred Ee--cC---CeEEEEECCCCeeeEEeec-cCCC---eEEEEEe-CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC
Q 013436 245 GS--SD---DCIYVYDLEANKLSLRILA-HTSD---VNTVCFG-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 314 (443)
Q Consensus 245 ~~--~d---g~i~iwd~~~~~~~~~~~~-~~~~---v~~i~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 314 (443)
.- .+ ..+.++|..++........ .... -..+.+. +.+..++.....||.-+||-+.. .+.....+..
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~---~~~~~~~lT~ 277 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL---DGGKPRQLTS 277 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET---TSSEEEESS-
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc---cccceecccc
Confidence 32 22 3477788877754433331 2222 2345553 56666777777888655554441 3444556665
Q ss_pred CCCCeEE-EEECCCCCEEE-EEeCC--CCEEEEeC
Q 013436 315 HLEGITF-IDSRGDGRYLI-SNGKD--QAIKLWDI 345 (443)
Q Consensus 315 ~~~~v~~-~~~~~~~~~l~-s~~~d--g~i~iwd~ 345 (443)
..-.|+. +.|+++++.|. ++..+ ..-.||-+
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 5666755 66888877654 44442 23444443
No 334
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.19 E-value=0.0024 Score=59.97 Aligned_cols=196 Identities=12% Similarity=0.086 Sum_probs=103.4
Q ss_pred EEEEECCCCCEEEEEECC----------C-eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 128 YVSQFSADGSLFVAGFQA----------S-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~~d----------~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
+.++.+|.|..+|....+ . .|.||+.... .+....... +.+.++.|+.+. .|++...||.+++|
T Consensus 32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~-ll~~i~w~~---~~iv~~~wt~~e-~LvvV~~dG~v~vy 106 (410)
T PF04841_consen 32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK-LLSSIPWDS---GRIVGMGWTDDE-ELVVVQSDGTVRVY 106 (410)
T ss_pred eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC-EeEEEEECC---CCEEEEEECCCC-eEEEEEcCCEEEEE
Confidence 345667777777766443 1 5999997754 555533332 579999998865 56677899999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe-eeEEee---ccCC--
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL---AHTS-- 270 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---~~~~-- 270 (443)
|+.... .+........ ..-....+....+..+| ++.-..++.+++..-.... ....+. ....
T Consensus 107 ~~~G~~---~fsl~~~i~~-------~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~ 174 (410)
T PF04841_consen 107 DLFGEF---QFSLGEEIEE-------EKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKF 174 (410)
T ss_pred eCCCce---eechhhhccc-------cCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccc
Confidence 987433 1111110000 00011123333344355 3333345555544322211 111111 1000
Q ss_pred ----CeEE-EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 271 ----DVNT-VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 271 ----~v~~-i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
.... ..+. .+....+....++.+.+.+-. .... +. ..+++..+++||+++++|.-..+|.+.+...
T Consensus 175 ~~~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~----~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 175 HWWPSWTVIPLLS-SDRVVEILLANGETIYIIDEN----SFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred ccccccccceEee-cCcceEEEEecCCEEEEEEcc----cccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 0111 1222 333344444455555544433 1111 21 2468999999999999999999999988875
Q ss_pred CCCC
Q 013436 346 RKMS 349 (443)
Q Consensus 346 ~~~~ 349 (443)
.-.+
T Consensus 246 Df~~ 249 (410)
T PF04841_consen 246 DFSE 249 (410)
T ss_pred cccc
Confidence 4433
No 335
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.18 E-value=0.0069 Score=57.51 Aligned_cols=200 Identities=19% Similarity=0.198 Sum_probs=109.4
Q ss_pred ceEEEEECCCCCEEEEEE-CCC----eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC---------
Q 013436 126 RAYVSQFSADGSLFVAGF-QAS----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--------- 191 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg--------- 191 (443)
.+....+||||+++|.+- ..| .|+++|+.+|+.+...+.... ...+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~----~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK----FSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE----SEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc----cceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 344678999999998763 333 499999999966654322211 22399999998887766433
Q ss_pred --eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC----CeEEEEECCCC----ee
Q 013436 192 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEAN----KL 261 (443)
Q Consensus 192 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~----~~ 261 (443)
.|+.|++.+.......-..... .......+..++|+++|+..... ..+++.|+..+ ..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~------------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPD------------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TT------------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred CcEEEEEECCCChHhCeeEEeecC------------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence 3778888776543111111111 11125678889999988765432 35888898874 23
Q ss_pred eEEeeccCCCeE-EEEEeCCCCCEEEEee---CCCeEEEEecccCCCCCceeeeecCCCCC--eEEEEECCCCCEEEEEe
Q 013436 262 SLRILAHTSDVN-TVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGRYLISNG 335 (443)
Q Consensus 262 ~~~~~~~~~~v~-~i~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~ 335 (443)
...+......+. .+... ++.+++... .++.|.-.++..... ......+..+... +..+.. .+.+|+...
T Consensus 269 ~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~ 343 (414)
T PF02897_consen 269 PKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSL--FKDYLVLSY 343 (414)
T ss_dssp EEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEE--ETTEEEEEE
T ss_pred cEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEE--ECCEEEEEE
Confidence 344444344443 34443 343443332 335677777763211 1122245555553 444444 455555443
Q ss_pred -CCC--CEEEEeCC
Q 013436 336 -KDQ--AIKLWDIR 346 (443)
Q Consensus 336 -~dg--~i~iwd~~ 346 (443)
.++ .|+++++.
T Consensus 344 ~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 344 RENGSSRLRVYDLD 357 (414)
T ss_dssp EETTEEEEEEEETT
T ss_pred EECCccEEEEEECC
Confidence 343 57888887
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.00012 Score=68.31 Aligned_cols=193 Identities=19% Similarity=0.195 Sum_probs=118.1
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEE---CC-CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CC
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGF---QA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MS 190 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~d 190 (443)
....+..-...+..-+|+|+++.++.-. .. ..+.++++.++..... ....+ .-..-+|+|||+.|+.+. .|
T Consensus 184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~~~~g---~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-LNFNG---NNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-eccCC---ccCCccCCCCCCEEEEEECCC
Confidence 3444555566788889999998766542 22 4599999998844332 22233 244568999999888654 55
Q ss_pred C--eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-C--eEEEEECCCCeeeEEe
Q 013436 191 P--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRI 265 (443)
Q Consensus 191 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~ 265 (443)
| .|.++|+.++....+..... .-..-.|+|||+.++..+.. | .|.++|++.+.. ..+
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~g-----------------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~ri 321 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFG-----------------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRL 321 (425)
T ss_pred CCccEEEEcCCCCcceecccCCc-----------------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEe
Confidence 5 57777887776433221111 11245789999998887654 3 478888877764 344
Q ss_pred eccCCCeEEEEEeCCCCCEEEEeeCC-Ce--EEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 013436 266 LAHTSDVNTVCFGDESGHLIYSGSDD-NL--CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~~~~~d-~~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 336 (443)
......-..-.|+ ++|++|+..+.. |. |.+.|+. ++.....+. +......-+|.++++.+...+.
T Consensus 322 T~~~~~~~~p~~S-pdG~~i~~~~~~~g~~~i~~~~~~----~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 322 TFSGGGNSNPVWS-PDGDKIVFESSSGGQWDIDKNDLA----SGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred eccCCCCcCccCC-CCCCEEEEEeccCCceeeEEeccC----CCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 3333333367787 788888776643 44 5666665 333233332 3344455678888887775544
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=0.00014 Score=70.25 Aligned_cols=72 Identities=10% Similarity=0.071 Sum_probs=61.5
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
.+++++|+|..-.|+.|-.-|.+.+|...+.+ .......|..+|..+.||++|..|+++..-|.|.+|....
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e---~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE---THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCce---eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 36679999999999999999999999987652 2224567888999999999999999999999999998763
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.00026 Score=66.20 Aligned_cols=154 Identities=23% Similarity=0.257 Sum_probs=97.0
Q ss_pred ceEEEEEECCCCCeEEEEE---CC-CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEE
Q 013436 170 WTVTDTSLSPDQRHLVYAS---MS-PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (443)
Q Consensus 170 ~~v~~i~~s~~~~~l~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~ 245 (443)
..+..-+|+|+++.++... .. ..+.++++++++...+..... .-...+|+|||+.|+.+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g-----------------~~~~P~fspDG~~l~f~ 255 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG-----------------NNGAPAFSPDGSKLAFS 255 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC-----------------ccCCccCCCCCCEEEEE
Confidence 3577778999998877653 23 469999999988766555332 23346899999987766
Q ss_pred ec-CC--eEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee-CCCe--EEEEecccCCCCCceeeeecCCCCCe
Q 013436 246 SS-DD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNL--CKVWDRRCLNVKGKPAGVLMGHLEGI 319 (443)
Q Consensus 246 ~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~v 319 (443)
.. || .|+++|+..+... .+....+.-..-.|+ ++|+.++..+ ..|. |.++|.. +.....+......-
T Consensus 256 ~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~~-----g~~~~riT~~~~~~ 328 (425)
T COG0823 256 SSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDLE-----GSQVTRLTFSGGGN 328 (425)
T ss_pred ECCCCCccEEEEcCCCCcce-ecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECCC-----CCceeEeeccCCCC
Confidence 43 44 4788898887733 354434444466787 6666665554 4554 5555553 33334443333333
Q ss_pred EEEEECCCCCEEEEEeC-CCC--EEEEeCCC
Q 013436 320 TFIDSRGDGRYLISNGK-DQA--IKLWDIRK 347 (443)
Q Consensus 320 ~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~ 347 (443)
..-.|+|||++|+..+. +|. |.+.|+.+
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 37779999999987664 344 55555544
No 339
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00034 Score=67.81 Aligned_cols=184 Identities=11% Similarity=0.103 Sum_probs=113.2
Q ss_pred cccCCCCc-eEEEEECCCCCEEEEEECCC-----eEEEEECCCC------eEEE--Eeee--cCCccceEEEEEECCCCC
Q 013436 119 PVDQTTSR-AYVSQFSADGSLFVAGFQAS-----QIRIYDVERG------WKIQ--KDIL--AKSLRWTVTDTSLSPDQR 182 (443)
Q Consensus 119 ~~~~h~~~-v~~~~~s~~~~~l~~g~~d~-----~i~iwd~~~~------~~~~--~~~~--~~~~~~~v~~i~~s~~~~ 182 (443)
.+..+... |..+....+..+|++-+.|+ .++||+++.- .++. .... ......++.+++.+.+-+
T Consensus 59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~ 138 (933)
T KOG2114|consen 59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK 138 (933)
T ss_pred hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc
Confidence 34445555 44444444446788766654 4899998743 1221 1111 112356788999999999
Q ss_pred eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee-
Q 013436 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL- 261 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~- 261 (443)
.+|+|-.+|.|..+.=+--+-... +....+ .-..+|+.+++..+++.++.+..-..|.+|.+....+
T Consensus 139 ~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~-----------~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~ 206 (933)
T KOG2114|consen 139 TIVCGFTNGLVICYKGDILRDRGS-RQDYSH-----------RGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPS 206 (933)
T ss_pred EEEEEecCcEEEEEcCcchhcccc-ceeeec-----------cCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcc
Confidence 999999999998875321111111 111111 1234899999999888733333455699999885443
Q ss_pred eEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec-CCCCCeE
Q 013436 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGIT 320 (443)
Q Consensus 262 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~ 320 (443)
...+..|..+++|..+++..+.+++ ++ +..+.+||.. ...+...+. +|.....
T Consensus 207 ~~~ld~~G~~lnCss~~~~t~qfIc-a~-~e~l~fY~sd----~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 207 LKVLDNNGISLNCSSFSDGTYQFIC-AG-SEFLYFYDSD----GRGPCFAFEVGEKKEML 260 (933)
T ss_pred eeeeccCCccceeeecCCCCccEEE-ec-CceEEEEcCC----CcceeeeecCCCeEEEE
Confidence 4447788889999999855554544 33 3479999987 445555555 6654433
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.09 E-value=0.0017 Score=62.26 Aligned_cols=255 Identities=18% Similarity=0.208 Sum_probs=131.5
Q ss_pred EEEEECCCeEEEEECCCCeEEEEeeecCCc----------cceEE-----------------EEEE---CCCCCeEEEEE
Q 013436 139 FVAGFQASQIRIYDVERGWKIQKDILAKSL----------RWTVT-----------------DTSL---SPDQRHLVYAS 188 (443)
Q Consensus 139 l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~----------~~~v~-----------------~i~~---s~~~~~l~~~~ 188 (443)
|.+|+..|.|+|+-+.+++.+..+-..... +..|. .+++ ..||++|..-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 667888899999988877655433221100 00111 0111 12567777755
Q ss_pred C-CCeEEEEECCCCceeccc---cceecccCceeeccCCCCceecEE-----EEEEeCCCCEEEEE-ecCCeEEEEECCC
Q 013436 189 M-SPIVHIVDVGSGTMESLA---NVTEIHDGLDFSAADDGGYSFGIF-----SLKFSTDGRELVAG-SSDDCIYVYDLEA 258 (443)
Q Consensus 189 ~-dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~-----~l~~~~~~~~l~~~-~~dg~i~iwd~~~ 258 (443)
. +..|-..++...++..+. +....|. +.+...+ ++..|. .+=+.|||+.+... -..+.+.+.|..+
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg-~~~~~~p---~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~et 224 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHG-LRPQKIP---RTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAET 224 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccc-cCccccC---CccEEEeCcccccccCCCCCEeecccceeEEEEEEECcc
Confidence 3 344555555544443333 3333222 1111001 111222 23345677655333 2346688888888
Q ss_pred CeeeEEeeccCCCeEEEEEeCCCCCEEEEee----------------------------------------CCCeEEEEe
Q 013436 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGS----------------------------------------DDNLCKVWD 298 (443)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~----------------------------------------~d~~i~iwd 298 (443)
.+...++.-.. ....+.++ +++.++++.+ .++.|.+.|
T Consensus 225 meV~~qV~Vdg-npd~v~~s-pdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID 302 (635)
T PRK02888 225 MEVAWQVMVDG-NLDNVDTD-YDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVD 302 (635)
T ss_pred ceEEEEEEeCC-CcccceEC-CCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEE
Confidence 77666654322 33455665 4565555554 124466666
Q ss_pred cccCCCCC-ceeeeecCCCCCeEEEEECCCCCEEEEEeC-CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCc
Q 013436 299 RRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (443)
Q Consensus 299 ~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (443)
.+.....+ ..+..+ .-......++++|||+++++++. +.+|.|.|+.+....-....
T Consensus 303 ~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~-------------------- 361 (635)
T PRK02888 303 GRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI-------------------- 361 (635)
T ss_pred CCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC--------------------
Confidence 65100001 222222 23345677999999999886665 89999999998543211100
Q ss_pred ccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
-+....+.+..- ....+ +..|+++|+...|---|..|..||+..
T Consensus 362 --~~~~~vvaevev---GlGPL----HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 --KPRDAVVAEPEL---GLGPL----HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --CccceEEEeecc---CCCcc----eEEECCCCCEEEeEeecceeEEEehHH
Confidence 000111111111 01111 123666888888888899999999875
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.08 E-value=0.00073 Score=60.16 Aligned_cols=147 Identities=16% Similarity=0.087 Sum_probs=91.2
Q ss_pred CCCeEEEEECCCeEEEEECC-CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCC
Q 013436 180 DQRHLVYASMSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (443)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 258 (443)
.++.|+.|+.+| +.++++. ........ +...|..+...|+-+.+++-+ |+.++++++..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~------------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL------------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe------------------ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 577899999999 8999982 22221111 112588999999887777665 59999999876
Q ss_pred CeeeEE--------------eeccCCCeEEEE-EeCCCCCEEEEeeCCCeEEEEecccCCCCC-ceeeeecCCCCCeEEE
Q 013436 259 NKLSLR--------------ILAHTSDVNTVC-FGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFI 322 (443)
Q Consensus 259 ~~~~~~--------------~~~~~~~v~~i~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~v~~~ 322 (443)
-..... .......+...+ -....+...++......|.+|......... .....+. ....+..+
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i 144 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSI 144 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEE
Confidence 543331 112233444444 112344444445555699999887432122 4445554 34778899
Q ss_pred EECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 323 DSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 323 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
+|. ++.++.+..+ ...+.|+.+...
T Consensus 145 ~~~--~~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 145 AFL--GNKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred EEe--CCEEEEEeCC-ceEEEecCCCCc
Confidence 998 5567777654 488899986554
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=0.0013 Score=55.05 Aligned_cols=139 Identities=21% Similarity=0.085 Sum_probs=91.8
Q ss_pred CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe
Q 013436 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (443)
Q Consensus 181 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 260 (443)
..+++.|+..+.+.-.|..++...-...... .|.+-+.- -|++++.|...|.+++.+.+++.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~-----------------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs 84 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV-----------------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS 84 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc-----------------eeeeeeEE-ECCEEEEEEccCcEEEEEecchh
Confidence 4567778888888888988887644332221 22222222 47789999999999999999997
Q ss_pred eeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC-CCCEEEEEeCCCC
Q 013436 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQA 339 (443)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~ 339 (443)
....+... +.|.+-+..++++.++.+|+.|++.+..|.+ +..++...+...+...+-+..| ++. |..+...|.
T Consensus 85 ~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~----~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~ 158 (354)
T KOG4649|consen 85 QIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPK----TYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGA 158 (354)
T ss_pred heeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEeccc----ccceEEecccCCceeccceecCCCce-EEEEeccce
Confidence 77766542 3344434446889999999999999999998 7777776654444344445566 444 333334454
Q ss_pred EEEE
Q 013436 340 IKLW 343 (443)
Q Consensus 340 i~iw 343 (443)
+.--
T Consensus 159 vlav 162 (354)
T KOG4649|consen 159 VLAV 162 (354)
T ss_pred EEEE
Confidence 4333
No 343
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.01 E-value=0.0041 Score=56.25 Aligned_cols=194 Identities=19% Similarity=0.159 Sum_probs=99.7
Q ss_pred EECCCCCEEEEEEC-C--CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccc
Q 013436 131 QFSADGSLFVAGFQ-A--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (443)
Q Consensus 131 ~~s~~~~~l~~g~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 207 (443)
+|.+||+.|+.++. | ..+.+.|+.+++..+... ..+ .......++|+++.++.......|+-.|+.+.+...+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd-g~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD-GPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc-CCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 67889977665554 4 457788999985544321 111 11224567899898887777778999999998876665
Q ss_pred cceecccCceeeccCCCCceecEEEEEE--eCCCCEEEEEe----------------------cCCeEEEEECCCCeeeE
Q 013436 208 NVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGS----------------------SDDCIYVYDLEANKLSL 263 (443)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~ 263 (443)
.+...- +-...| +.|+..++..- -...|.-.|+.+++...
T Consensus 119 ~~p~~~----------------~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 119 EVPDDW----------------KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp E--TTE----------------EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred ECCccc----------------ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 544321 212333 33555443321 11357777888887544
Q ss_pred EeeccCCCeEEEEEeCCCCCEEEEeeC---CCe-EEEEecccCCCCCceeeeecCC--CCCeEEEEECCCCCEEEEEeC-
Q 013436 264 RILAHTSDVNTVCFGDESGHLIYSGSD---DNL-CKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGK- 336 (443)
Q Consensus 264 ~~~~~~~~v~~i~~~~~~~~~l~~~~~---d~~-i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~- 336 (443)
.+ .....+..+.|+|.++.+|+.|-. +.. -+||-++.. +.....+..+ ...+..=-|.|||..|.--+.
T Consensus 183 v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d---g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~ 258 (386)
T PF14583_consen 183 VF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD---GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT 258 (386)
T ss_dssp EE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT---S---EESS---TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred EE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC---CCcceeeecCCCCcccccccccCCCCEEEEEeec
Confidence 44 456678899999888888887653 322 367777643 3333333333 233445559999987653221
Q ss_pred ----CCCEEEEeCCC
Q 013436 337 ----DQAIKLWDIRK 347 (443)
Q Consensus 337 ----dg~i~iwd~~~ 347 (443)
+..|.-+|+.+
T Consensus 259 ~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDT 273 (386)
T ss_dssp TTT--EEEEEE-TTT
T ss_pred CCCCceEEEeeCCCC
Confidence 33455556655
No 344
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.99 E-value=1.2e-06 Score=81.28 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=109.5
Q ss_pred ccccCCCCceEEEEECC-CCCEEEEEEC----CCeEEEEECCCCeEE--EEeeecCCccceEEEEEECCCCCeEEEEECC
Q 013436 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQ----ASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~-~~~~l~~g~~----d~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d 190 (443)
....+|...+++++|++ |.+.||+|-. |..+.|||+.++-.. .......+.......++|-.+.+++.+|...
T Consensus 96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s 175 (783)
T KOG1008|consen 96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS 175 (783)
T ss_pred eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence 44567888999999998 5677887743 456999999876221 1111111122335678898888889999888
Q ss_pred CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEEC-CCC-eeeEEeec
Q 013436 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDL-EAN-KLSLRILA 267 (443)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~-~~~-~~~~~~~~ 267 (443)
..++++|++........ +.. ..+..+...| .+.++++-. ||.|.+||. +.- .++..+..
T Consensus 176 r~~~ifdlRqs~~~~~s-vnT----------------k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~ 237 (783)
T KOG1008|consen 176 RSVHIFDLRQSLDSVSS-VNT----------------KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILR 237 (783)
T ss_pred chhhhhhhhhhhhhhhh-hhh----------------hhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhh
Confidence 89999998743221111 110 1455677788 677777655 999999993 322 22222222
Q ss_pred c----CCCeEEEEEeCCCCCEEEEeeCC-CeEEEEeccc
Q 013436 268 H----TSDVNTVCFGDESGHLIYSGSDD-NLCKVWDRRC 301 (443)
Q Consensus 268 ~----~~~v~~i~~~~~~~~~l~~~~~d-~~i~iwd~~~ 301 (443)
. ...+..++|+|....++++...| ++|+++|+..
T Consensus 238 ~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 238 NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 2 23489999998777777777655 6899999874
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.97 E-value=0.013 Score=53.39 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=106.4
Q ss_pred CeEEEEECCCCeEEEEeeecCCc-cceEEEEEECCC----CCeEEEEEC----------CCeEEEEECCCC-----ceec
Q 013436 146 SQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSPD----QRHLVYASM----------SPIVHIVDVGSG-----TMES 205 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~i~~s~~----~~~l~~~~~----------dg~i~iwd~~~~-----~~~~ 205 (443)
..|++.|..+.+.+......... -..+..+.+..+ ..+|++|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35888888887766544433221 122333444433 467777653 288999999884 2221
Q ss_pred cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe-eeEEee-ccCCCeEEEEEeCCCCC
Q 013436 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL-AHTSDVNTVCFGDESGH 283 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~-~~~~~v~~i~~~~~~~~ 283 (443)
..... ..++|++++-- ++. |+++. .+.|++|++...+ ....-. .....+.++... ++
T Consensus 82 i~~~~---------------~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~ 140 (321)
T PF03178_consen 82 IHSTE---------------VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KN 140 (321)
T ss_dssp EEEEE---------------ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TT
T ss_pred EEEEe---------------ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---cc
Confidence 11111 22378888766 444 55544 5789999998877 333222 233366666664 56
Q ss_pred EEEEeeCCCeEEEEecccCCCCCceeeeec--CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
++++|.....+.++..+. ....+..+. .....++++.+-++++.++.+..+|.+.++....
T Consensus 141 ~I~vgD~~~sv~~~~~~~---~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDE---ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEESSSSEEEEEEET---TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEcccCEEEEEEEc---cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 899999888888886552 122222222 2344688888886667999999999999998864
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.96 E-value=8.7e-05 Score=70.22 Aligned_cols=148 Identities=16% Similarity=0.129 Sum_probs=102.5
Q ss_pred cceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC
Q 013436 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (443)
Q Consensus 169 ~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 248 (443)
...|.--++...+++++.|+.-|.+++|+-.++......... ..+.+..+..+++..++|.|+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~---------------~~~~~~~~~vs~~e~lvAagt~~ 97 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG---------------ATGITCVRSVSSVEYLVAAGTAS 97 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC---------------ccceEEEEEecchhHhhhhhcCC
Confidence 334555667778899999999999999998877665443311 22256677888889999999999
Q ss_pred CeEEEEECCCCeeeEE-----e-eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEE
Q 013436 249 DCIYVYDLEANKLSLR-----I-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (443)
Q Consensus 249 g~i~iwd~~~~~~~~~-----~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 322 (443)
|.|.++-++...+... . ..|...|++++|+ +++..+++|...|+|.+-.+.....-......+......|..+
T Consensus 98 g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQl 176 (726)
T KOG3621|consen 98 GRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQL 176 (726)
T ss_pred ceEEeehhhccCCCcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEe
Confidence 9999998876432211 1 1478899999997 9999999999999999988763100112223333345667777
Q ss_pred EECCCCCEEEE
Q 013436 323 DSRGDGRYLIS 333 (443)
Q Consensus 323 ~~~~~~~~l~s 333 (443)
+.. ++.+|++
T Consensus 177 D~~-q~~LLVS 186 (726)
T KOG3621|consen 177 DYL-QSYLLVS 186 (726)
T ss_pred ecc-cceehHh
Confidence 665 3334443
No 347
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.96 E-value=0.0093 Score=55.26 Aligned_cols=36 Identities=14% Similarity=-0.021 Sum_probs=29.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 315 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
....+.++..+|++++.|+...=|.|.++|+.+...
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 445678899999999888887789999999998543
No 348
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.95 E-value=0.0011 Score=63.57 Aligned_cols=188 Identities=14% Similarity=0.064 Sum_probs=114.0
Q ss_pred EECCCCCEEEEEE-CCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC----eEEEEECCCCceec
Q 013436 131 QFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----IVHIVDVGSGTMES 205 (443)
Q Consensus 131 ~~s~~~~~l~~g~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~ 205 (443)
=++|||+.+...+ ..+.+.+.|.++.+...+..... ....++++|+++++++.+.+. ++...+........
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg----npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~v 274 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG----NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVV 274 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC----CcccceECCCCCEEEEeccCcccCcceeeeccccCceEE
Confidence 3556776554332 34667888888765544433322 245688999999998876432 23333322211111
Q ss_pred cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCC-----CeeeEEeeccCCCeEEEEEeCC
Q 013436 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKLSLRILAHTSDVNTVCFGDE 280 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~i~~~~~ 280 (443)
.+.... + -++.++|++...+ ++.|.+.|.++ .+.+..+ .-......+.++ |
T Consensus 275 vfni~~------------------i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vS-P 330 (635)
T PRK02888 275 VFNIAR------------------I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTS-P 330 (635)
T ss_pred EEchHH------------------H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE-ECCCCccceEEC-C
Confidence 111000 0 1334578766653 67899999988 3444444 445567889998 7
Q ss_pred CCCEEEEe-eCCCeEEEEecccCCC--------CCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 281 SGHLIYSG-SDDNLCKVWDRRCLNV--------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 281 ~~~~l~~~-~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
++++++++ ..+.+|.|.|+..... ....+.+..- ...-...+|.++|..+.|...|..|..||+..
T Consensus 331 DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 331 DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 77766554 5688999999984221 0112233322 22334678999999888888999999999876
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.88 E-value=0.0053 Score=56.98 Aligned_cols=129 Identities=18% Similarity=0.143 Sum_probs=79.7
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCceec-ccc------------ceecccCce---eeccC-----------C
Q 013436 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-LAN------------VTEIHDGLD---FSAAD-----------D 223 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~------------~~~~~~~~~---~~~~~-----------~ 223 (443)
.|+.+.|.++...|+++...|.|.||.+..++... ... .......+. ..... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999999999999999999999876554322 000 000000000 00000 0
Q ss_pred CCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee--c------cCCCeEEEEEe----CCCC---CEEEEe
Q 013436 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--A------HTSDVNTVCFG----DESG---HLIYSG 288 (443)
Q Consensus 224 ~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~i~~~----~~~~---~~l~~~ 288 (443)
....++|++++.| |=.++++|..+|.+.|.|++....+..-. . ....++++.|+ ..++ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1235689999997 56689999999999999999888776532 1 23457778775 1223 478889
Q ss_pred eCCCeEEEEecc
Q 013436 289 SDDNLCKVWDRR 300 (443)
Q Consensus 289 ~~d~~i~iwd~~ 300 (443)
...|.+.+|.+.
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 999999999885
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.86 E-value=0.0073 Score=55.85 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=62.3
Q ss_pred CCCCCEEEEEE---------CCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 133 SADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 133 s~~~~~l~~g~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
|||+++++... ..+.+.|||+.++..... . .....+....|||+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l-~---~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL-T---PPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES-S----EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC-c---CCccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 68888888743 236799999999744332 1 1144578899999999999875 57899999887755
Q ss_pred eccccceecccCceeeccCC----CCceecEEEEEEeCCCCEEEEEec
Q 013436 204 ESLANVTEIHDGLDFSAADD----GGYSFGIFSLKFSTDGRELVAGSS 247 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~~~~~~~l~~~~~ 247 (443)
..+.... ... .+....+ +.--..-..+-||||+++|+....
T Consensus 76 ~~lT~dg--~~~-i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 76 TQLTTDG--EPG-IYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp EESES----TTT-EEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred EEecccc--cee-EEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 4433322 100 0000000 000001235889999998887643
No 351
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=0.0087 Score=51.43 Aligned_cols=174 Identities=13% Similarity=0.103 Sum_probs=116.1
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEEC
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 198 (443)
++.+-...|.++.|+|+.+.|++......-.|+=...|+.+...- +.+.. ....|++..++++.++--+++.+.++.+
T Consensus 80 pi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-L~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 80 PILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-LTGFS-DPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-ccccC-ChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 355666679999999999888887776766666556675655433 33322 2556888888888888888999999888
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE---eecc-------
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---ILAH------- 268 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~------- 268 (443)
............. +..........+...++|.|....|+.+-+..-+.||.+........ ...+
T Consensus 158 d~~t~~~~~~~~~------i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 158 DADTTVISAKVQK------IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF 231 (316)
T ss_pred cCCccEEeccceE------EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence 7664332222211 11111111144678899999888888888877777776653321111 0111
Q ss_pred CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecc
Q 013436 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~ 300 (443)
-..|.++.|++..+.+++-+..++.+.-.|..
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 23577888988889999999999999888874
No 352
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.78 E-value=0.0042 Score=60.83 Aligned_cols=184 Identities=13% Similarity=0.117 Sum_probs=104.3
Q ss_pred CceEEEEECCCCCEEEEEE------CCC--eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC-CeEEE
Q 013436 125 SRAYVSQFSADGSLFVAGF------QAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHI 195 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-g~i~i 195 (443)
..+...++||||+.+|..- .|. .|.+++.... .... ..+. ..+.-.|+|||+.|++.... ..+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~l--t~g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQV--LEGH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceee--ecCC--CCCCceECCCCCceEEEecCcceEEE
Confidence 4678999999999887765 243 4555554322 2222 1221 26778999999888877543 22223
Q ss_pred E-----------ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEE---EECCCCee
Q 013436 196 V-----------DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV---YDLEANKL 261 (443)
Q Consensus 196 w-----------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i---wd~~~~~~ 261 (443)
. ++..++... .....|..+.|||||..++... +|.|++ -....+..
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~-------------------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~ 483 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS-------------------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY 483 (591)
T ss_pred eccCCCceEEEEeccCchhhh-------------------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce
Confidence 2 332222111 0123699999999999888876 577877 44444531
Q ss_pred -e---EEee-ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC--CCCCeEEEEECCCCCEEEEE
Q 013436 262 -S---LRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 262 -~---~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~ 334 (443)
+ ..+. .-...+.++.|. .++.+ +++..++...+|.+.- .+.....+.+ ...++..|+-+++ .++..
T Consensus 484 ~l~~~~~l~~~l~~~~~~l~W~-~~~~L-~V~~~~~~~~v~~v~v---DG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 484 ALTNPREVGPGLGDTAVSLDWR-TGDSL-VVGRSDPEHPVWYVNL---DGSNSDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred eecccEEeecccCCccccceEe-cCCEE-EEEecCCCCceEEEec---CCccccccCCCCccCceEEEecCCc--eEEEE
Confidence 1 1122 223346889997 66664 4555555555666542 2222222222 3567778887763 35555
Q ss_pred eCCCCEE
Q 013436 335 GKDQAIK 341 (443)
Q Consensus 335 ~~dg~i~ 341 (443)
..++.+.
T Consensus 557 ~~~g~~~ 563 (591)
T PRK13616 557 DARAVLQ 563 (591)
T ss_pred cCCceEE
Confidence 5566333
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.02 Score=53.37 Aligned_cols=201 Identities=11% Similarity=0.130 Sum_probs=133.3
Q ss_pred eEEEEECCCCCEE-EEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC---CCeEEEEECCCCc
Q 013436 127 AYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGT 202 (443)
Q Consensus 127 v~~~~~s~~~~~l-~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~---dg~i~iwd~~~~~ 202 (443)
-..++.++.+..+ ++...++.|.+.|..+........... ....++++|+++.+.++.. ++.+.+.|..++.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~----~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL----GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc----CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 4567888888754 444456889999987765554433332 4677999999988877665 6889999988887
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeE-E---eeccCCCeEEEEE
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSL-R---ILAHTSDVNTVCF 277 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~---~~~~~~~v~~i~~ 277 (443)
......... .+ ..+++.|+|..+++.. .++.|.+.|.+...... . ...-......+.+
T Consensus 152 ~~~~~~vG~----------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v 214 (381)
T COG3391 152 VTATIPVGN----------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV 214 (381)
T ss_pred EEEEEecCC----------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEE
Confidence 655422111 13 6799999999666665 68899999977765542 1 1112233456777
Q ss_pred eCCCCCEEEEeeCC---CeEEEEecccCCCCCceeeeecCCCC-CeEEEEECCCCCEEEEEeC-CCCEEEEeCCCCCCcc
Q 013436 278 GDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNA 352 (443)
Q Consensus 278 ~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~ 352 (443)
. +++..+++.... +.+...|.. .+........-.. ....+..+|+|..+.+... .+.+.+-|..+.....
T Consensus 215 ~-~~g~~~yV~~~~~~~~~v~~id~~----~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 215 D-PDGNRVYVANDGSGSNNVLKIDTA----TGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred C-CCCCEEEEEeccCCCceEEEEeCC----CceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 6 677755554433 588888887 5444443111111 4567889999998877744 4889999988865444
Q ss_pred c
Q 013436 353 S 353 (443)
Q Consensus 353 ~ 353 (443)
.
T Consensus 290 ~ 290 (381)
T COG3391 290 T 290 (381)
T ss_pred e
Confidence 3
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.036 Score=51.74 Aligned_cols=197 Identities=17% Similarity=0.207 Sum_probs=122.9
Q ss_pred ceEEEEECCCCCEEEEEEC-CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE-EEECCCeEEEEECCCCce
Q 013436 126 RAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-~~~~dg~i~iwd~~~~~~ 203 (443)
....+...+++..+..... ...+...+.... ..... ..........++.++.+..+. ....++.|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~~--~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQS--LSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc-eeeee--ccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 4566778888855444332 224555554421 11111 111113355678888887554 444568999999776655
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec---CCeEEEEECCCCeeeEEeeccCCCeEEEEEeCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (443)
........ .-..++++|+++.+.++.. ++.+.+.|..+++..........+ ..+++. +
T Consensus 109 ~~~~~vG~-----------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~-p 169 (381)
T COG3391 109 LGSIPVGL-----------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD-P 169 (381)
T ss_pred eeEeeecc-----------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC-C
Confidence 44333222 3456899999988877765 688999999999888875544444 888996 6
Q ss_pred CCCEEEEe-eCCCeEEEEecccCCCCCceee-e---ecCCCCCeEEEEECCCCCEEEEEeCC---CCEEEEeCCCC
Q 013436 281 SGHLIYSG-SDDNLCKVWDRRCLNVKGKPAG-V---LMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKM 348 (443)
Q Consensus 281 ~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~ 348 (443)
+++.++.. ..++.|.+.|.. ...... . ...-...-..+.++|+|.++.+.... +.+...|..+.
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~----~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTS----GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCC----CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 77755444 478899999976 222221 0 11222344678899999866554433 57888888773
No 355
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.72 E-value=0.0093 Score=58.46 Aligned_cols=191 Identities=16% Similarity=0.164 Sum_probs=107.3
Q ss_pred CCCCCEEEEEECCC------eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC-C-----eEEEEECCC
Q 013436 133 SADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-----IVHIVDVGS 200 (443)
Q Consensus 133 s~~~~~l~~g~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-g-----~i~iwd~~~ 200 (443)
+..+.+++.|+.++ .+..||..++..... .... ....-.+++.. ++...++|+.| | .+..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~-a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL-APMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeec-CCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence 44567788888773 588899888733221 1122 22223334443 45788889988 3 688899988
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCe-----EEEEECCCCeeeEEeeccCCCeEEE
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLSLRILAHTSDVNTV 275 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~i 275 (443)
++........... +...+..+ +|...++|+.||. |-.||..+.+....- .........
T Consensus 359 ~~W~~~a~M~~~R------------~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~ 421 (571)
T KOG4441|consen 359 NQWTPVAPMNTKR------------SDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGH 421 (571)
T ss_pred CceeccCCccCcc------------ccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeee
Confidence 8866544433321 11122222 6888899998864 778888776532211 111123333
Q ss_pred EEeCCCCCEEEEeeCCC------eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCC-----EEEEe
Q 013436 276 CFGDESGHLIYSGSDDN------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-----IKLWD 344 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-----i~iwd 344 (443)
....-++.+.++|+.++ .+..||.... ....+..+..-........+ ++.+.+.||.|+. |..||
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEc
Confidence 33335678888888654 5677887633 12222222211122222222 6777888887763 66677
Q ss_pred CCC
Q 013436 345 IRK 347 (443)
Q Consensus 345 ~~~ 347 (443)
..+
T Consensus 498 p~~ 500 (571)
T KOG4441|consen 498 PET 500 (571)
T ss_pred CCC
Confidence 665
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.67 E-value=0.0024 Score=63.61 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=91.9
Q ss_pred CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-----CCCEEEEEecCCeEEEEECCCCe--e
Q 013436 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANK--L 261 (443)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-----~~~~l~~~~~dg~i~iwd~~~~~--~ 261 (443)
....|+-.|++.|+.+......... +|..++-.. +....+.|-.+..|..||.+-.. +
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~---------------~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDI---------------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCc---------------ceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 4568999999999887666543311 233332211 12345667778889999988642 2
Q ss_pred eEE-e--eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q 013436 262 SLR-I--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 338 (443)
Q Consensus 262 ~~~-~--~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 338 (443)
+.. . ........|++-. .+ -+||+|+.+|.|++||.- .......+.+...+|..|+.+.||+++++.+. .
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt-~~-G~iavgs~~G~IRLyd~~----g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-t 639 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATT-ED-GYIAVGSNKGDIRLYDRL----GKRAKTALPGLGDPIIGIDVTADGKWILATCK-T 639 (794)
T ss_pred eeccccccccCCCceEEEec-CC-ceEEEEeCCCcEEeeccc----chhhhhcCCCCCCCeeEEEecCCCcEEEEeec-c
Confidence 211 1 1234556777764 44 478999999999999953 33444556677899999999999999887764 4
Q ss_pred CEEEEeCC
Q 013436 339 AIKLWDIR 346 (443)
Q Consensus 339 ~i~iwd~~ 346 (443)
.+.|++..
T Consensus 640 yLlLi~t~ 647 (794)
T PF08553_consen 640 YLLLIDTL 647 (794)
T ss_pred eEEEEEEe
Confidence 67788764
No 357
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.66 E-value=0.002 Score=64.14 Aligned_cols=147 Identities=14% Similarity=0.189 Sum_probs=93.3
Q ss_pred CCCEEEEE-ECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC-------CCeEEEEECCCeEEEEECCCCceecc
Q 013436 135 DGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-------QRHLVYASMSPIVHIVDVGSGTMESL 206 (443)
Q Consensus 135 ~~~~l~~g-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~ 206 (443)
+.++|+.- .....|+-.|++.|+.+........ .+|..+ .|+ ....+.|-.+..+..||.+-.....+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~--~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD--IPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCC--cceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 34444443 3456789999999987776554332 224444 343 23456677788899999875431111
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEE
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 286 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 286 (443)
.. ..+ .+ .......|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|..|..+ .+|++++
T Consensus 568 ~~--~~k---~Y------~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt-~DGkwil 634 (794)
T PF08553_consen 568 DS--QSK---QY------SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVT-ADGKWIL 634 (794)
T ss_pred ec--ccc---cc------ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEec-CCCcEEE
Confidence 00 000 00 112256777777666 59999999999999943333334456778999999998 9999887
Q ss_pred EeeCCCeEEEEec
Q 013436 287 SGSDDNLCKVWDR 299 (443)
Q Consensus 287 ~~~~d~~i~iwd~ 299 (443)
+.+. ..+.+++.
T Consensus 635 aTc~-tyLlLi~t 646 (794)
T PF08553_consen 635 ATCK-TYLLLIDT 646 (794)
T ss_pred Eeec-ceEEEEEE
Confidence 6664 46777775
No 358
>PHA02713 hypothetical protein; Provisional
Probab=97.62 E-value=0.011 Score=57.97 Aligned_cols=123 Identities=12% Similarity=0.127 Sum_probs=61.3
Q ss_pred eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC------CeEEEEECCCCceeccccceecccCceeec
Q 013436 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (443)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (443)
.+..||..++.... .......... .+++. -++..+++|+.+ ..+..||..++.............
T Consensus 273 ~v~~yd~~~~~W~~-l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~------ 343 (557)
T PHA02713 273 CILVYNINTMEYSV-ISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC------ 343 (557)
T ss_pred CEEEEeCCCCeEEE-CCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh------
Confidence 57788888763222 1111111111 11222 356777777754 357788888776543332221110
Q ss_pred cCCCCceecEEEEEEeCCCCEEEEEecCC-----eEEEEECCCCeeeE--EeeccCCCeEEEEEeCCCCCEEEEeeCC
Q 013436 221 ADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDD 291 (443)
Q Consensus 221 ~~~~~~~~~i~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d 291 (443)
.. +++. -+|+..+.|+.++ .+..||..+++-.. .+....... +++. -++.+.+.|+.+
T Consensus 344 --------~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~--~~g~IYviGG~~ 408 (557)
T PHA02713 344 --------RF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCV--LDQYIYIIGGRT 408 (557)
T ss_pred --------ce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEE--ECCEEEEEeCCC
Confidence 11 1222 2677778887653 48889988764322 121111111 2222 356777777754
No 359
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.61 E-value=0.00019 Score=41.44 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=33.6
Q ss_pred ceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 307 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
.++..+..|...|.++.|++++.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778888999999999999999999999999996
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.59 E-value=0.012 Score=42.99 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=50.9
Q ss_pred eEEEEEeCCCC---CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 272 VNTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 272 v~~i~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
|++|++.+-++ +.|++|+.|..|++|+- ...+..+.. ...|+++.-... ..|+.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~------~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG------DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC------CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 67787775443 68999999999999985 366666653 457788876655 568888899999999764
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.57 E-value=0.016 Score=52.91 Aligned_cols=178 Identities=15% Similarity=0.166 Sum_probs=103.7
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC----CCEEEEEec---------C-CeEEEEECC
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGSS---------D-DCIYVYDLE 257 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~----~~~l~~~~~---------d-g~i~iwd~~ 257 (443)
.|++.|..+.+......+.... +...+..+.+..+ ..+|++|+. . |.|.++++.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E------------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~ 70 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNE------------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEIS 70 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTE------------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEEC
T ss_pred EEEEEeCCCCeEEEEEECCCCc------------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEE
Confidence 5788888777665444433221 2223444455432 467777753 2 899999998
Q ss_pred CC----eeeEEe--eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCc-eeee-ecCCCCCeEEEEECCCCC
Q 013436 258 AN----KLSLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGV-LMGHLEGITFIDSRGDGR 329 (443)
Q Consensus 258 ~~----~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~-~~~~~~~v~~~~~~~~~~ 329 (443)
.. ..+..+ ....++|++++-. ++. |+++. .+.|.+|++. ..+ .... .......++++... ++
T Consensus 71 ~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~----~~~~l~~~~~~~~~~~i~sl~~~--~~ 140 (321)
T PF03178_consen 71 ESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLD----NSKTLLKKAFYDSPFYITSLSVF--KN 140 (321)
T ss_dssp SS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEE----TTSSEEEEEEE-BSSSEEEEEEE--TT
T ss_pred cccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEcc----CcccchhhheecceEEEEEEecc--cc
Confidence 84 122222 2457889999875 444 44433 4689999998 333 2221 12223366666664 55
Q ss_pred EEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCC
Q 013436 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (443)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 409 (443)
+++.|..-..+.++..+.. ...+..+........+..+.+-+ +
T Consensus 141 ~I~vgD~~~sv~~~~~~~~---------------------------------~~~l~~va~d~~~~~v~~~~~l~----d 183 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDEE---------------------------------NNKLILVARDYQPRWVTAAEFLV----D 183 (321)
T ss_dssp EEEEEESSSSEEEEEEETT---------------------------------TE-EEEEEEESS-BEEEEEEEE-----S
T ss_pred EEEEEEcccCEEEEEEEcc---------------------------------CCEEEEEEecCCCccEEEEEEec----C
Confidence 8999988888888855431 12233333333333444444433 4
Q ss_pred ccEEEEeeCCCeEEEEEcc
Q 013436 410 QKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 410 ~~~l~tg~~dg~v~iwd~~ 428 (443)
++.++.+..+|.|.++...
T Consensus 184 ~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 184 EDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEETTSEEEEEEE-
T ss_pred CcEEEEEcCCCeEEEEEEC
Confidence 5689999999999999876
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.57 E-value=0.034 Score=54.11 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=91.3
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC--CCCeEEEEE------CCCeEEEEECCCCceeccc
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYAS------MSPIVHIVDVGSGTMESLA 207 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 207 (443)
+..++.++.|+.+.-.|..+|+.+-+.... .+.. -..+.-+| .+..++++. .+|.|..+|.++++..-..
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~-~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNG-DYKA-GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccc-cccc-cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 346777888999999999999776553321 1110 00111122 123455543 2689999999999876443
Q ss_pred cceecccC----------cee--e-cc-CCCCc-eecEE-EEEEeCCCCEEEEEecC-----C-----------eEEEEE
Q 013436 208 NVTEIHDG----------LDF--S-AA-DDGGY-SFGIF-SLKFSTDGRELVAGSSD-----D-----------CIYVYD 255 (443)
Q Consensus 208 ~~~~~~~~----------~~~--~-~~-~~~~~-~~~i~-~l~~~~~~~~l~~~~~d-----g-----------~i~iwd 255 (443)
........ ... . .. ....+ ...+. .+++.|+..+++.+..+ + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 33211100 000 0 00 00000 11222 34666666666665422 2 678889
Q ss_pred CCCCeeeEEeeccCCCe---------EEEEEeCCCCC---EEEEeeCCCeEEEEecccCCCCCcee
Q 013436 256 LEANKLSLRILAHTSDV---------NTVCFGDESGH---LIYSGSDDNLCKVWDRRCLNVKGKPA 309 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~v---------~~i~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~ 309 (443)
+++++..-.++.....+ .-+.+ +.+++ .++.+..+|.+.+.|.+ +++.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~-~~~G~~~~~v~~~~K~G~~~vlDr~----tG~~i 338 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDL-KKDGKPRKLLAHADRNGFFYVLDRT----NGKLL 338 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEe-ccCCcEEEEEEEeCCCceEEEEECC----CCcee
Confidence 99999877766322211 12222 23554 78899999999999998 55554
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.56 E-value=0.015 Score=42.48 Aligned_cols=100 Identities=22% Similarity=0.254 Sum_probs=67.5
Q ss_pred EEEEEEeC---CC-CEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCC
Q 013436 230 IFSLKFST---DG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (443)
Q Consensus 230 i~~l~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 305 (443)
|+++++.. +| +.|++|+.|..|++|+- ...+..+.. ...|++++-. .+..|+.+..+|+|-+|+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~----- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSL--GGGRFAYALANGTVGVYDRS----- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEc--CCCEEEEEecCCEEEEEeCc-----
Confidence 45555554 33 57999999999999984 355666643 5678888775 33679999999999999863
Q ss_pred CceeeeecCCCCCeEEEEEC-CC--C-CEEEEEeCCCCEE
Q 013436 306 GKPAGVLMGHLEGITFIDSR-GD--G-RYLISNGKDQAIK 341 (443)
Q Consensus 306 ~~~~~~~~~~~~~v~~~~~~-~~--~-~~l~s~~~dg~i~ 341 (443)
..+....... .++++++. .+ | .-|++|-.+|.|-
T Consensus 72 -~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 -QRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -ceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3344444333 35665543 33 2 3688888888764
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.055 Score=48.39 Aligned_cols=204 Identities=19% Similarity=0.137 Sum_probs=112.7
Q ss_pred eeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecC-C-ccceEEEEEECCCCCeE
Q 013436 107 MLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-S-LRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 107 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~-~-~~~~v~~i~~s~~~~~l 184 (443)
.+.++-+.......-.+.+.+.++..-..+..|+++.. .+.+++.+++..+....... + .....+.+...|+|.+.
T Consensus 48 ~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~w 125 (307)
T COG3386 48 RIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIW 125 (307)
T ss_pred eEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEE
Confidence 34444443332333333444555555445555555533 36777776664422221111 1 22346678889998866
Q ss_pred EEEEC-----------CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEE
Q 013436 185 VYASM-----------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIY 252 (443)
Q Consensus 185 ~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~ 252 (443)
+.... -|.|+.++. .+.......- +-..-+.|+||||++.|+.+.. .+.|+
T Consensus 126 fgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~----------------~~~~~NGla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 126 FGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD----------------DLTIPNGLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred EeCCCccccCccccCCcceEEEEcC-CCCEEEeecC----------------cEEecCceEECCCCCEEEEEeCCCCeEE
Confidence 54333 123333333 2332222211 1123557999999987777755 47788
Q ss_pred EEECCC--C----ee-eEEeeccCCCeEEEEEeCCCCCEEEEeeCCC-eEEEEecccCCCCCceeeeecCCCCCeEEEEE
Q 013436 253 VYDLEA--N----KL-SLRILAHTSDVNTVCFGDESGHLIYSGSDDN-LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 324 (443)
Q Consensus 253 iwd~~~--~----~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 324 (443)
-|++.. + +. ...+....+..-.++. +.++++.+++..+| .|.+|+. .++.+..+.-....+++++|
T Consensus 189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v-DadG~lw~~a~~~g~~v~~~~p-----dG~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV-DADGNLWVAAVWGGGRVVRFNP-----DGKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred EEecCcccCccCCcceEEEccCCCCCCCceEE-eCCCCEEEecccCCceEEEECC-----CCcEEEEEECCCCCCccceE
Confidence 887752 1 11 1122233455666777 47888876555554 8999998 57778777767678888888
Q ss_pred CC-CCCEEEEEe
Q 013436 325 RG-DGRYLISNG 335 (443)
Q Consensus 325 ~~-~~~~l~s~~ 335 (443)
-. +.+.|...+
T Consensus 263 gG~~~~~L~iTs 274 (307)
T COG3386 263 GGPDLNTLYITS 274 (307)
T ss_pred eCCCcCEEEEEe
Confidence 53 445554333
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00056 Score=64.16 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=66.3
Q ss_pred ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEE-EEEECCCCCeEEEEECCCeEEEEEC
Q 013436 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~i~~s~~~~~l~~~~~dg~i~iwd~ 198 (443)
+......|.-+.|+|.-.++|++..+|.|.+..+. .+.+.. ..-+...++ +++|.|||+.||+|-.||+|++.|+
T Consensus 16 ~~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt---ip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 16 VMSLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT---IPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred hhccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEe---ccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 34456679999999999999999999999998887 333332 332333455 9999999999999999999999999
Q ss_pred CCCceecc
Q 013436 199 GSGTMESL 206 (443)
Q Consensus 199 ~~~~~~~~ 206 (443)
+++.....
T Consensus 92 e~~~~l~~ 99 (665)
T KOG4640|consen 92 EKGGRLVS 99 (665)
T ss_pred cCCCceec
Confidence 99876544
No 366
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.54 E-value=0.047 Score=47.08 Aligned_cols=164 Identities=8% Similarity=0.146 Sum_probs=89.0
Q ss_pred cCCccceEEEEEECCCCC-eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEE
Q 013436 165 AKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (443)
Q Consensus 165 ~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 243 (443)
..+....+..++|+|+.+ ++++....+.|..++.. ++......+... .....|++..++.+++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~---------------~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGF---------------GDYEGITYLGNGRYVL 80 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----------------SSEEEEEE-STTEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCC---------------CCceeEEEECCCEEEE
Confidence 444455699999999865 55566677888888864 555544433321 1467788887777666
Q ss_pred EEecCCeEEEEECCCCe------eeEEee-----ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCcee--e
Q 013436 244 AGSSDDCIYVYDLEANK------LSLRIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA--G 310 (443)
Q Consensus 244 ~~~~dg~i~iwd~~~~~------~~~~~~-----~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~ 310 (443)
+--.++.+.++++.... ....+. .++..+-.++|. +.++.|+.+-...-..+|.++... ....+ .
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D-~~~~~L~v~kE~~P~~l~~~~~~~-~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD-PKTNRLFVAKERKPKRLYEVNGFP-GGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE-TTTTEEEEEEESSSEEEEEEESTT--SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc-CCCCEEEEEeCCCChhhEEEcccc-Cccceeec
Confidence 66568999999884321 112222 244568999997 554555555555556666665211 01111 1
Q ss_pred e------ecCCCCCeEEEEECCC-CCEEEEEeCCCCEEEEeCC
Q 013436 311 V------LMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 311 ~------~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~ 346 (443)
. .......+.+++++|. +++++.+.....|.++|..
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 1 1123456788999985 4566677777888888843
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.51 E-value=0.00017 Score=41.63 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=31.2
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd 152 (443)
..+..|...|.+++|++++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34567888999999999999999999999999996
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0053 Score=56.73 Aligned_cols=144 Identities=15% Similarity=0.228 Sum_probs=93.8
Q ss_pred CCCeEE-EEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-------EEEEEecCCeE
Q 013436 180 DQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-------ELVAGSSDDCI 251 (443)
Q Consensus 180 ~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-------~l~~~~~dg~i 251 (443)
+.++|+ .+.....++-.|++.|+.+....+.. .|.-+.+.|+.+ .-+.|-.+..|
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~-----------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~v 406 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFED-----------------DINMVDITPDFKFAQLTSEQTLVGLSDNSV 406 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccC-----------------CcceeeccCCcchhcccccccEEeecCCce
Confidence 444444 34445578888999998876555433 244455555432 23456667889
Q ss_pred EEEECCCCee--eEEeecc----CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEEC
Q 013436 252 YVYDLEANKL--SLRILAH----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (443)
Q Consensus 252 ~iwd~~~~~~--~~~~~~~----~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 325 (443)
.-||.+-... +..-..| .....|.+- ...-+|++|+.+|.|++||.- .......+.+...+|..|..+
T Consensus 407 friDpRv~~~~kl~~~q~kqy~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdri----~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 407 FRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDRI----GRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred EEecccccCcceeeeeeccccccccccceeee--cCCceEEEeecCCcEEeehhh----hhhhhhcccccCCceeeEEee
Confidence 9999874321 1111222 234455555 344588999999999999974 334455677888999999999
Q ss_pred CCCCEEEEEeCCCCEEEEeCCC
Q 013436 326 GDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 326 ~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.+|++|++.+ +..+.+-++.-
T Consensus 481 adGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 481 ADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred ccCcEEEEec-ccEEEEEEEec
Confidence 9999888766 45677776654
No 369
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.49 E-value=0.015 Score=56.30 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=67.0
Q ss_pred CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecE--EEEEEeCCCCEEEEEecCCeEEEEECCC
Q 013436 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI--FSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (443)
Q Consensus 181 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 258 (443)
+..+++++.++.|.-+|..+++..-.......... ....+ ..+... ++..++.++.++.|+-+|.++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~----------~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADR----------GCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccc----------cccccccCCcEEc-cCCeEEEecCCCeEEEEECCC
Confidence 44566777789999999998876544332211000 00000 011111 225788888999999999999
Q ss_pred CeeeEEeeccCCC-----e-EEEEEeCCCCCEEEEee---------CCCeEEEEecccCCCCCceeeeec
Q 013436 259 NKLSLRILAHTSD-----V-NTVCFGDESGHLIYSGS---------DDNLCKVWDRRCLNVKGKPAGVLM 313 (443)
Q Consensus 259 ~~~~~~~~~~~~~-----v-~~i~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~ 313 (443)
++.+.+....... + .+..+. +..++.++ .++.+..+|.. +++.+..+.
T Consensus 130 G~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~----TG~~~W~~~ 192 (488)
T cd00216 130 GKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVE----TGKLLWRFY 192 (488)
T ss_pred CCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECC----CCceeeEee
Confidence 9988776543221 1 122232 23444553 36788888987 666665553
No 370
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.49 E-value=0.076 Score=48.31 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=80.8
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEE--CCCCCeEEEEEC---------------
Q 013436 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPDQRHLVYASM--------------- 189 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~--s~~~~~l~~~~~--------------- 189 (443)
.....++|+++.++....+..|+-.|+++.+.... ... ...-+-...| +.|+..++-.-.
T Consensus 83 ~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v-y~~--p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~ 159 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV-YEV--PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFR 159 (386)
T ss_dssp TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE-EE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHH
T ss_pred ccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE-EEC--CcccccccceeeCCCccEEEEEEEeehhccCccccHHHH
Confidence 33567788888887766667899999998743322 222 1222333444 345555443211
Q ss_pred -------CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEec------CCeEEEEE
Q 013436 190 -------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS------DDCIYVYD 255 (443)
Q Consensus 190 -------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~------dg~i~iwd 255 (443)
...|.-.|+.+++...+.... .-+..+.|+| |...|+.|.+ |..|.+.+
T Consensus 160 e~~~a~p~~~i~~idl~tG~~~~v~~~~-----------------~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 160 EFYEARPHCRIFTIDLKTGERKVVFEDT-----------------DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp HHHHC---EEEEEEETTT--EEEEEEES-----------------S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred HHHhhCCCceEEEEECCCCceeEEEecC-----------------ccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence 124555566666554433321 1466789999 4455655543 22344444
Q ss_pred CCCCeeeEEeeccC--CCeEEEEEeCCCCCEEEEee-----CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC
Q 013436 256 LEANKLSLRILAHT--SDVNTVCFGDESGHLIYSGS-----DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 328 (443)
Q Consensus 256 ~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (443)
... .....+..+. ..+..=-|. ++|..|.--+ .+..|.-+|+. +++..... ....-..+-.++||
T Consensus 223 ~dg-~~~~~v~~~~~~e~~gHEfw~-~DG~~i~y~~~~~~~~~~~i~~~d~~----t~~~~~~~--~~p~~~H~~ss~Dg 294 (386)
T PF14583_consen 223 TDG-SNVKKVHRRMEGESVGHEFWV-PDGSTIWYDSYTPGGQDFWIAGYDPD----TGERRRLM--EMPWCSHFMSSPDG 294 (386)
T ss_dssp TTS----EESS---TTEEEEEEEE--TTSS-EEEEEEETTT--EEEEEE-TT----T--EEEEE--EE-SEEEEEE-TTS
T ss_pred cCC-CcceeeecCCCCccccccccc-CCCCEEEEEeecCCCCceEEEeeCCC----CCCceEEE--eCCceeeeEEcCCC
Confidence 332 2233333222 223334565 5665444322 23456666766 44332211 12234456678899
Q ss_pred CEEEEEeCC
Q 013436 329 RYLISNGKD 337 (443)
Q Consensus 329 ~~l~s~~~d 337 (443)
++++-=+.|
T Consensus 295 ~L~vGDG~d 303 (386)
T PF14583_consen 295 KLFVGDGGD 303 (386)
T ss_dssp SEEEEEE--
T ss_pred CEEEecCCC
Confidence 987754444
No 371
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00083 Score=63.06 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=76.1
Q ss_pred cEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeE-EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCc
Q 013436 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (443)
Q Consensus 229 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 307 (443)
.|.-+.|+|.-..+|.+..+|.|.+..++ .+.+.++..+...++ +++|. ++|++|++|-.||+|++.|+. .+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve----~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVE----KGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeec-CCCCEEEEEecCCeEEEEEcc----CCC
Confidence 67889999999999999999999999988 677888876777777 99996 889999999999999999998 555
Q ss_pred eeeee-cCCCCCeEEEEECC
Q 013436 308 PAGVL-MGHLEGITFIDSRG 326 (443)
Q Consensus 308 ~~~~~-~~~~~~v~~~~~~~ 326 (443)
.+..+ ..-...|.++.|++
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 55442 23455777777763
No 372
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.46 E-value=0.016 Score=48.04 Aligned_cols=154 Identities=15% Similarity=0.262 Sum_probs=94.7
Q ss_pred CCceEEEEECCCCCEEEEEEC---------CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE-EECCCeE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIV 193 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~~dg~i 193 (443)
....+.-..+|+|++++-.-. .|.++.|-.... +....... .--+.++|+.+.+.+.. -+.+-+|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~~~v---~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELIWNCV---GISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceeeehhc---cCCccccccccCcEEEEEccCceEE
Confidence 445566678899998443222 245566654432 22111111 12356889988776654 4556678
Q ss_pred EEEE--CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCC
Q 013436 194 HIVD--VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (443)
Q Consensus 194 ~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (443)
.-|| ..++.......+........+...... .++...+|.+.++.-+.++|...|..+++.+..+.-....
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PD-------Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPD-------GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCC-------cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 7787 666665443333332222112211111 1344557888888888999999999999999999988999
Q ss_pred eEEEEEeCCCCCEEEEee
Q 013436 272 VNTVCFGDESGHLIYSGS 289 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~ 289 (443)
|+++||--++-.++++..
T Consensus 256 itsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 256 ITSCCFGGKNLDILYVTT 273 (310)
T ss_pred eEEEEecCCCccEEEEEe
Confidence 999999755545665544
No 373
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.45 E-value=0.02 Score=54.07 Aligned_cols=184 Identities=14% Similarity=0.159 Sum_probs=96.9
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
+.....+|.+.++ +|+-...++|.|+.--+...... ..... .+..|-. |.+|...+.+ .|.+||+.+++.+
T Consensus 69 G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~-i~~~~---~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i 139 (443)
T PF04053_consen 69 GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKS-IKLPF---SVEKIFG---GNLLGVKSSD-FICFYDWETGKLI 139 (443)
T ss_dssp EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT------SS----EEEEE----SSSEEEEETT-EEEEE-TTT--EE
T ss_pred CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceE-EcCCc---ccceEEc---CcEEEEECCC-CEEEEEhhHccee
Confidence 4556678998555 66666678899973222111011 11111 2444432 7777776655 8999999999876
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-----------eeeEEeeccCCCeE
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-----------KLSLRILAHTSDVN 273 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~v~ 273 (443)
...... +|..+.|++++++++..+.+ .++|++.... .....+..-...|.
T Consensus 140 ~~i~v~------------------~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~Ik 200 (443)
T PF04053_consen 140 RRIDVS------------------AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIK 200 (443)
T ss_dssp EEESS-------------------E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--S
T ss_pred eEEecC------------------CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeE
Confidence 655432 47899999999999998866 4777765433 12333333367899
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+.+|. .+ .++-.+.. .++. +. .++ ...+..-..++.=+.+.|..+.+.....|+.|..+.+..
T Consensus 201 Sg~W~-~d--~fiYtT~~-~lkY--l~----~Ge-~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 201 SGCWV-ED--CFIYTTSN-HLKY--LV----NGE-TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEE-TT--EEEEE-TT-EEEE--EE----TTE-EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEEE-cC--EEEEEcCC-eEEE--EE----cCC-cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 99996 44 44444444 6766 32 222 223333345677777888777888888899898887754
No 374
>PHA02713 hypothetical protein; Provisional
Probab=97.45 E-value=0.0078 Score=59.10 Aligned_cols=187 Identities=10% Similarity=0.052 Sum_probs=100.8
Q ss_pred CCCEEEEEECC------CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC-----eEEEEECCCCce
Q 013436 135 DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTM 203 (443)
Q Consensus 135 ~~~~l~~g~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~ 203 (443)
++..+++||.+ ..+..||..++... ..............+. -+++..+.|+.++ .+..||..+++.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 67777788753 34778898876322 2111111111222222 2677778888764 488899888766
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-----------------------CeEEEEECCCCe
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----------------------DCIYVYDLEANK 260 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----------------------g~i~iwd~~~~~ 260 (443)
........... ....+.. ++...+.|+.+ ..|..||..+.+
T Consensus 380 ~~~~~mp~~r~--------------~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~ 443 (557)
T PHA02713 380 KMLPDMPIALS--------------SYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI 443 (557)
T ss_pred EECCCCCcccc--------------cccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe
Confidence 54433222110 1111222 67777777654 247789988765
Q ss_pred eeE--EeeccCCCeEEEEEeCCCCCEEEEeeCC------CeEEEEeccc-CCCCCceeeeecCCCCCeEEEEECCCCCEE
Q 013436 261 LSL--RILAHTSDVNTVCFGDESGHLIYSGSDD------NLCKVWDRRC-LNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331 (443)
Q Consensus 261 ~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 331 (443)
-.. .+...... .+++. -++++.+.|+.+ ..+..||... . ....+..+.........+.+ +++..
T Consensus 444 W~~v~~m~~~r~~-~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~~~r~~~~~~~~--~~~iy 516 (557)
T PHA02713 444 WETLPNFWTGTIR-PGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTESRLSALHTILH--DNTIM 516 (557)
T ss_pred EeecCCCCccccc-CcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccCcccccceeEEE--CCEEE
Confidence 322 22111111 12333 346677777654 2467888873 1 22333334333333333334 67888
Q ss_pred EEEeCCC--CEEEEeCCC
Q 013436 332 ISNGKDQ--AIKLWDIRK 347 (443)
Q Consensus 332 ~s~~~dg--~i~iwd~~~ 347 (443)
++|+.++ .+..||..+
T Consensus 517 v~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 517 MLHCYESYMLQDTFNVYT 534 (557)
T ss_pred EEeeecceeehhhcCccc
Confidence 9999888 666777665
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.016 Score=49.52 Aligned_cols=194 Identities=16% Similarity=0.179 Sum_probs=112.6
Q ss_pred EECCCCCEEEEEECC-----CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC----------------
Q 013436 131 QFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------------- 189 (443)
Q Consensus 131 ~~s~~~~~l~~g~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~---------------- 189 (443)
.|||||.+|.+.-.| |.|-|||...+ .++.-....|.-....+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 699999999876443 67999999854 3333344455555678899999999887643
Q ss_pred --CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCe-----EEEEECCCCeee
Q 013436 190 --SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLS 262 (443)
Q Consensus 190 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~ 262 (443)
...+.+.|..++..+....+... -+.-.|..++..+||+.++.+-..|. -.+=-...++.+
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~------------l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l 265 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPAS------------LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL 265 (366)
T ss_pred hcCccEEEEeccccchhhhccCchh------------hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence 12344445444544433333211 13336888888888886655533321 111112233333
Q ss_pred EEee-------ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 013436 263 LRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (443)
Q Consensus 263 ~~~~-------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 335 (443)
.-+. .....|-+|+.+..++-..+++-..+...+||.. ++..+..-.- .....++- ...-++..+
T Consensus 266 ~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~----tG~vv~~a~l--~daaGva~--~~~gf~vss 337 (366)
T COG3490 266 EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA----TGAVVSEAAL--PDAAGVAA--AKGGFAVSS 337 (366)
T ss_pred cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC----CCcEEecccc--ccccccee--ccCceEEec
Confidence 3322 2234577888874555555555566678899998 7766543221 12222333 333466667
Q ss_pred CCCCEEEEeCC
Q 013436 336 KDQAIKLWDIR 346 (443)
Q Consensus 336 ~dg~i~iwd~~ 346 (443)
.+|.+.++.-.
T Consensus 338 g~G~~~~~s~~ 348 (366)
T COG3490 338 GQGRIIFYSRA 348 (366)
T ss_pred CCceEEecccc
Confidence 78888888443
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.0015 Score=53.72 Aligned_cols=106 Identities=19% Similarity=0.324 Sum_probs=71.5
Q ss_pred CCEEEEEecCCeEEEEECCCCeeeE-EeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC-
Q 013436 239 GRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL- 316 (443)
Q Consensus 239 ~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~- 316 (443)
+..+++|+.+|.|++|......... ........|-++.-.-.++.+..+++.||.|+.|++. ..+.+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~----p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK----PNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc----cCceeeeeccccC
Confidence 4579999999999999876322111 1112223333333222455688999999999999998 777777776776
Q ss_pred CCeEEEEECCCCCEEEEE--eCCCCEEEEeCCCC
Q 013436 317 EGITFIDSRGDGRYLISN--GKDQAIKLWDIRKM 348 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~ 348 (443)
.++..+..+..+++++.+ |.|..++.|++...
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 566666666666777776 77777888877663
No 377
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.17 E-value=0.22 Score=46.95 Aligned_cols=199 Identities=14% Similarity=0.054 Sum_probs=100.0
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceE-----EEEEECCCCCeEEEEECCCeEEEEECC
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV-----TDTSLSPDQRHLVYASMSPIVHIVDVG 199 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~i~~s~~~~~l~~~~~dg~i~iwd~~ 199 (443)
+.|.++.|+.+..+++ -..||.+++||+... . .-..........| ....+..+| ++.-..++.+.+.+-.
T Consensus 81 ~~iv~~~wt~~e~Lvv-V~~dG~v~vy~~~G~-~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVV-VQSDGTVRVYDLFGE-F-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCeEEE-EEcCCEEEEEeCCCc-e-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCc
Confidence 7899999998766554 458899999998743 3 1111111111112 222333345 3333445555444322
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeC
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (443)
.... ............. ....+........++.+....+....++.+.+.+-...+. + ...+++..|++|
T Consensus 156 ~~~~-~~~~~~~~p~~~~----~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavS- 225 (410)
T PF04841_consen 156 DEPV-KLRRLPEIPGLWT----KFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVS- 225 (410)
T ss_pred cccc-hhhccccCCCccc----ccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEEC-
Confidence 2111 1111111110000 0000000000133445555555555666676555333211 2 234689999998
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC-CCCeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
++++++|.-..+|.+.+.... -.+....+... ......+.|..+...++.- +..|.+..
T Consensus 226 png~~iAl~t~~g~l~v~ssD----f~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 226 PNGKFIALFTDSGNLWVVSSD----FSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCCEEEEEECCCCEEEEECc----ccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 889999999999999888765 33444444322 3455677777654333332 33455544
No 378
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.16 E-value=0.13 Score=47.43 Aligned_cols=203 Identities=13% Similarity=0.035 Sum_probs=93.4
Q ss_pred CCCEEEEEE-CCCeEEEEECCCC---eEEEEeeecCC-cc----ceEEEEEECCCCCeEEEE--ECC----CeEEEEECC
Q 013436 135 DGSLFVAGF-QASQIRIYDVERG---WKIQKDILAKS-LR----WTVTDTSLSPDQRHLVYA--SMS----PIVHIVDVG 199 (443)
Q Consensus 135 ~~~~l~~g~-~d~~i~iwd~~~~---~~~~~~~~~~~-~~----~~v~~i~~s~~~~~l~~~--~~d----g~i~iwd~~ 199 (443)
+.++|+..+ ..+.|+|.|+.+. -.+.+.+.... +. .....+---|+|+.++++ ..+ |-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 457777776 5778999999853 12333222100 10 122333345789888874 333 367788877
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec--------------------CCeEEEEECCCC
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--------------------DDCIYVYDLEAN 259 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~ 259 (443)
+.+.......... ...--.++-|.|..+.+++... ..++.+||+.+.
T Consensus 166 tf~v~g~We~~~~-------------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 166 TFEVKGRWEKDRG-------------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp T--EEEE--SB-T-------------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred cccccceeccCCC-------------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 6655443332211 1123556778887777777642 257999999999
Q ss_pred eeeEEeeccC--CCeEEEEEe-CCCCCE-EEEeeCCCeEEEEec-ccCCCCCceeeeecC-----------------CCC
Q 013436 260 KLSLRILAHT--SDVNTVCFG-DESGHL-IYSGSDDNLCKVWDR-RCLNVKGKPAGVLMG-----------------HLE 317 (443)
Q Consensus 260 ~~~~~~~~~~--~~v~~i~~~-~~~~~~-l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~-----------------~~~ 317 (443)
+.++++.-.. .....+.|. .++..+ ++.+....+|..|-. ....-..+.+..+.. -..
T Consensus 233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~ 312 (461)
T PF05694_consen 233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP 312 (461)
T ss_dssp EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence 9999887432 234566664 233333 333334445544433 211111112222211 134
Q ss_pred CeEEEEECCCCCEEEEEeC-CCCEEEEeCCCCCC
Q 013436 318 GITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSS 350 (443)
Q Consensus 318 ~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~ 350 (443)
-|+.|..|.|.++|..++. +|.|+.||+.....
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 5789999999999987665 89999999998554
No 379
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0086 Score=60.09 Aligned_cols=108 Identities=11% Similarity=0.123 Sum_probs=77.0
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceecccccee
Q 013436 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE 211 (443)
Q Consensus 132 ~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 211 (443)
-.-.+..++.|+..|.+...|.... +..........++|++++|+.+|+.++.|-.+|.|.+||+..++.........
T Consensus 95 ~a~~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 95 SAIVVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeeeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC
Confidence 3335667999999999999888764 22233445566789999999999999999999999999999987665544322
Q ss_pred cccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEEC
Q 013436 212 IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (443)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 256 (443)
.+ +. +|..+.+..++..++++...|. +|.+
T Consensus 173 ap------------~t-~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 173 AP------------VT-GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred Cc------------cc-eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 11 12 3444555556667888888886 4443
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.11 E-value=0.15 Score=43.93 Aligned_cols=182 Identities=17% Similarity=0.137 Sum_probs=109.3
Q ss_pred eEEEEECCCCCEEEEEECCC--eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee
Q 013436 127 AYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
.-.+.|..+|.++-+.+.-| .|+.+|+.+++........... --..++.. +++.....-.++...+||..+-+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY--FGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc--cceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 44667777888888877766 6999999999766544333221 11223333 3344445567889999999887665
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeecc-----CCCeEEEEEeC
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-----TSDVNTVCFGD 279 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~i~~~~ 279 (443)
..+.... .=+.++ .|++.|+.......|+++|..+.+....+... -..++.+.|.
T Consensus 124 ~~~~y~~-----------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 124 GTFPYPG-----------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp EEEE-SS-----------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred EEEecCC-----------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 5443221 334455 36777888777888999999888776665522 2346677775
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC---------------CCCCeEEEEECCCCCEEEEEeC
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---------------HLEGITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~s~~~ 336 (443)
+|.+.|-.-....|...|.. +++.+..+.- ...-.+.||++|....|...++
T Consensus 184 -~G~IyANVW~td~I~~Idp~----tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 184 -NGKIYANVWQTDRIVRIDPE----TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp -TTEEEEEETTSSEEEEEETT----T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred -cCEEEEEeCCCCeEEEEeCC----CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 56666655566677777777 6666554310 1346789999987666655543
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.07 E-value=0.0025 Score=38.70 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~ 154 (443)
...|.+++|+|...+||.|..+|.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 5579999999999999999999999999983
No 382
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.03 E-value=0.22 Score=44.51 Aligned_cols=203 Identities=16% Similarity=0.167 Sum_probs=111.8
Q ss_pred ccceeecccccCCCccccCCCCceEE-------EEECCC-CCEEEEEECCCeEEEEECC-CCeEEEEee-ecCCccceE-
Q 013436 104 CCHMLSRYLPVNGPWPVDQTTSRAYV-------SQFSAD-GSLFVAGFQASQIRIYDVE-RGWKIQKDI-LAKSLRWTV- 172 (443)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~h~~~v~~-------~~~s~~-~~~l~~g~~d~~i~iwd~~-~~~~~~~~~-~~~~~~~~v- 172 (443)
+...+.++.|.....+++-....+.. .-.-|. .+-|.+-|.||.+.-..++ .|+...+.. .......++
T Consensus 107 k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f 186 (342)
T PF06433_consen 107 KFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLF 186 (342)
T ss_dssp SEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-
T ss_pred cEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccc
Confidence 33445566665555555544443321 112232 2457788899999988887 443332211 111112222
Q ss_pred EEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC----
Q 013436 173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---- 248 (443)
Q Consensus 173 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d---- 248 (443)
..-++...+..++..+.+|.|+-.|+............-.... . ...+-..++-.-+++++..+.|++--..
T Consensus 187 ~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~-e---~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g 262 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDA-E---KADGWRPGGWQLIAYHAASGRLYVLMHQGGEG 262 (342)
T ss_dssp S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HH-H---HHTTEEE-SSS-EEEETTTTEEEEEEEE--TT
T ss_pred cccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcc-c---cccCcCCcceeeeeeccccCeEEEEecCCCCC
Confidence 2334455566677789999999999887754322211100000 0 0000011234457888766555553211
Q ss_pred ------CeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEe-eCCCeEEEEecccCCCCCceeeeecCC
Q 013436 249 ------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGH 315 (443)
Q Consensus 249 ------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~ 315 (443)
..|.++|+.+++.+.++.. ..++.+|.++..+..+|++. ..++.+.+||.. +++.++.+..-
T Consensus 263 sHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~----tGk~~~~~~~l 331 (342)
T PF06433_consen 263 SHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA----TGKLVRSIEQL 331 (342)
T ss_dssp -TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETT----T--EEEEE---
T ss_pred CccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc----CCcEEeehhcc
Confidence 2499999999999998864 34578999985555566654 457999999998 88888877643
No 383
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.01 E-value=0.066 Score=52.69 Aligned_cols=150 Identities=11% Similarity=0.116 Sum_probs=85.0
Q ss_pred eEEEEEECCCCCeEEEEE------CCC--eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEE
Q 013436 171 TVTDTSLSPDQRHLVYAS------MSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 242 (443)
.+...+++|+|+.++... .|. .|.+++... ....... +. ....-.|+|+|+.+
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~----------------g~--~~t~PsWspDG~~l 411 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLE----------------GH--SLTRPSWSLDADAV 411 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeec----------------CC--CCCCceECCCCCce
Confidence 578899999999888765 233 455555422 2211111 00 35667899998877
Q ss_pred EEEecC------------CeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCc-ee
Q 013436 243 VAGSSD------------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PA 309 (443)
Q Consensus 243 ~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~ 309 (443)
.+.... +.+.+.++..+.... .....|..+.|+ ++|..++... ++.|.+=-+.... .+. .+
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wS-pDG~RiA~i~-~g~v~Va~Vvr~~-~G~~~l 485 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLS-RDGVRAAMII-GGKVYLAVVEQTE-DGQYAL 485 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEEC-CCCCEEEEEE-CCEEEEEEEEeCC-CCceee
Confidence 776532 234444444443322 235679999998 8888777655 4677763222110 222 11
Q ss_pred ---eee-cCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 310 ---GVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 310 ---~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
..+ .+....+.++.|.+++.++ ++..++...+|.+.
T Consensus 486 ~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 486 TNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred cccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 112 2233346889999998855 55555545555543
No 384
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.26 Score=44.18 Aligned_cols=195 Identities=14% Similarity=0.078 Sum_probs=107.6
Q ss_pred EECCCCC-EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee-cccc
Q 013436 131 QFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-SLAN 208 (443)
Q Consensus 131 ~~s~~~~-~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~ 208 (443)
.|.++.. ++.+--..+.|.-|+..++....- .... .+.++..-..+..|+++ ..| +.+++.+++... ....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~--~~p~---~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVF--PSPG---GFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEE--ECCC---CcccceeecCCCeEEEE-ccc-cEEEeccCCceeEEecc
Confidence 4667766 455555678899999887632221 1111 23444333334344443 333 566776655552 2221
Q ss_pred ceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-----------CCeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
.... ......+.+...|+|.+.++... -|.|+.+|. .+..+..+..+-..-+.|+|
T Consensus 104 ~~~~------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~ 170 (307)
T COG3386 104 PEDG------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAF 170 (307)
T ss_pred ccCC------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEE
Confidence 1111 11125667888889886555433 144666665 45555555555667789999
Q ss_pred eCCCCCEEEEee-CCCeEEEEeccc--CCCCCce-eeeecCCCCCeEEEEECCCCCEEEEEeCCC-CEEEEeCC
Q 013436 278 GDESGHLIYSGS-DDNLCKVWDRRC--LNVKGKP-AGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIR 346 (443)
Q Consensus 278 ~~~~~~~l~~~~-~d~~i~iwd~~~--~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~iwd~~ 346 (443)
+ ++++.|+.+. ..+.|.-|++.. ....... ...+....+..-.++...+|.+.+++..+| .|.+|+..
T Consensus 171 S-pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 171 S-PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred C-CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 8 7776666554 457888887752 1111121 112222345556677777887775444443 78888776
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.94 E-value=0.0037 Score=38.00 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=28.8
Q ss_pred ecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe
Q 013436 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (443)
Q Consensus 228 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 260 (443)
..|..++|+|...+||.++.+|.|.+|.+ +++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 37999999999999999999999999998 444
No 386
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.26 Score=42.76 Aligned_cols=201 Identities=10% Similarity=0.150 Sum_probs=115.9
Q ss_pred eEEEEECCCCCEEE-EEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceec
Q 013436 127 AYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (443)
Q Consensus 127 v~~~~~s~~~~~l~-~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (443)
+.-++|-+-+.+.. .+... .-+|...-.-.+... ...+....+.++.|+|+.+.|++....+.-.++=-..|+...
T Consensus 45 ~f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~ak-pi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlir 121 (316)
T COG3204 45 VFPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAK-PILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIR 121 (316)
T ss_pred eeeeEEEeccccccccccch--hhhccCCceEEEecc-ccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEE
Confidence 34444444444332 23332 556655433222221 123344459999999999999888887776677666777776
Q ss_pred cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEe-------e--cc-CCCeEEE
Q 013436 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-------L--AH-TSDVNTV 275 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~--~~-~~~v~~i 275 (443)
...+...+ ....+.+..+|.+.++--.+..++++.+.....+..+ . .+ +...-.+
T Consensus 122 tiPL~g~~---------------DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGl 186 (316)
T COG3204 122 TIPLTGFS---------------DPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGL 186 (316)
T ss_pred EecccccC---------------ChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceee
Confidence 66555433 3445777777777777777888888877655322211 1 12 4567789
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC-------CCCeEEEEECC-CCCEEEEEeCCCCEEEEeCCC
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------LEGITFIDSRG-DGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+|. +..+.|..+-.-.=+.||...... ..-.+.....+ -..|.++.|++ .+.+|+-+..++.+.-.|...
T Consensus 187 A~d-~~~~~l~~aKEr~P~~I~~~~~~~-~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 187 AWD-PVDHRLFVAKERNPIGIFEVTQSP-SSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ecC-CCCceEEEEEccCCcEEEEEecCC-cccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 997 555555556555556666654211 11111111122 23466777876 455666666677777777654
No 387
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.85 E-value=0.31 Score=43.27 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=86.6
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecc
Q 013436 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (443)
Q Consensus 134 ~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 213 (443)
..++.|+.|+.+| +.+++........+.... ..|..+...|+-+.|++-+ |+.+.++++..-............
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec----ceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3578899998888 999998433222222212 1399999999877766654 499999998765543321100000
Q ss_pred cCceeeccCCCCceecEEEEE--EeCCCCEEEEEecCCeEEEEECCCC-----eeeEEeeccCCCeEEEEEeCCCCCEEE
Q 013436 214 DGLDFSAADDGGYSFGIFSLK--FSTDGRELVAGSSDDCIYVYDLEAN-----KLSLRILAHTSDVNTVCFGDESGHLIY 286 (443)
Q Consensus 214 ~~~~~~~~~~~~~~~~i~~l~--~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~ 286 (443)
...... ........+..++ -...+...++......|.+|..... +..+.+ .-...+.+++|. ++.++
T Consensus 79 ~~~~~~--~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i~ 152 (275)
T PF00780_consen 79 KSRSLP--TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL---GNKIC 152 (275)
T ss_pred cccccc--ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe---CCEEE
Confidence 000000 0000111343333 1123333344444558888877553 344444 345788999997 55677
Q ss_pred EeeCCCeEEEEecc
Q 013436 287 SGSDDNLCKVWDRR 300 (443)
Q Consensus 287 ~~~~d~~i~iwd~~ 300 (443)
.|..+ ...+.|+.
T Consensus 153 v~~~~-~f~~idl~ 165 (275)
T PF00780_consen 153 VGTSK-GFYLIDLN 165 (275)
T ss_pred EEeCC-ceEEEecC
Confidence 77655 47788887
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.28 Score=42.26 Aligned_cols=103 Identities=18% Similarity=0.273 Sum_probs=73.5
Q ss_pred cEEEEEEeCCC-CEEEEEecCCe-EEEEECCCCeeeEEeeccCCC--eEEEEEeCCCCCEEEEeeCC-----CeEEEEec
Q 013436 229 GIFSLKFSTDG-RELVAGSSDDC-IYVYDLEANKLSLRILAHTSD--VNTVCFGDESGHLIYSGSDD-----NLCKVWDR 299 (443)
Q Consensus 229 ~i~~l~~~~~~-~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~~~~~d-----~~i~iwd~ 299 (443)
....++|+|.. ..++.+-.-|+ ..++|.+..+.+..+...++. --.-+|+ ++|.+|+..-.| |.|-|||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEec
Confidence 34457888844 45666666665 578999888766665432221 1223676 889998876544 68999999
Q ss_pred ccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 013436 300 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (443)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 335 (443)
+. ....+.++..|.-.-..+.|.+||+.|+.+.
T Consensus 148 r~---~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 148 RE---GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cc---ccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 82 4567778888888888999999999988764
No 389
>PHA03098 kelch-like protein; Provisional
Probab=96.79 E-value=0.094 Score=51.67 Aligned_cols=188 Identities=11% Similarity=0.070 Sum_probs=93.7
Q ss_pred CCCCEEEEEECCC------eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC-----eEEEEECCCCc
Q 013436 134 ADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGT 202 (443)
Q Consensus 134 ~~~~~l~~g~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 202 (443)
.++..++.|+.++ .+..||..++.... .............+.+ ++..++.|+.++ .+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4566777776543 47788888764322 1111111222222222 577778887653 57788888776
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC------CeEEEEECCCCeeeEE--eeccCCCeEE
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLR--ILAHTSDVNT 274 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~ 274 (443)
........... .+| +++. -+++.++.|+.+ ..+..||..+++-... +...... .+
T Consensus 370 W~~~~~lp~~r----------~~~-----~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~ 432 (534)
T PHA03098 370 WREEPPLIFPR----------YNP-----CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GC 432 (534)
T ss_pred eeeCCCcCcCC----------ccc-----eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ce
Confidence 54433222111 011 1122 256777777632 4588999887653221 1111111 12
Q ss_pred EEEeCCCCCEEEEeeCCC--------eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CCEE
Q 013436 275 VCFGDESGHLIYSGSDDN--------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIK 341 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~--------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~ 341 (443)
++. .++.+++.|+.+. .+.+||..... ...+..+.........+.+ +++.++.|+.+ +.|.
T Consensus 433 ~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~ 506 (534)
T PHA03098 433 AIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIE 506 (534)
T ss_pred EEE--ECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeE
Confidence 222 3456666776432 37888886321 1112111111111122223 66777777654 4677
Q ss_pred EEeCCC
Q 013436 342 LWDIRK 347 (443)
Q Consensus 342 iwd~~~ 347 (443)
+||..+
T Consensus 507 ~yd~~~ 512 (534)
T PHA03098 507 VYDDKT 512 (534)
T ss_pred EEeCCC
Confidence 887765
No 390
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.5 Score=43.53 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=77.2
Q ss_pred CccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe
Q 013436 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (443)
Q Consensus 167 ~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 246 (443)
..+++|.++.||+|.+.||+--.+++|.+++....+........... .+..|....|+.+ .-+|..+
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~------------k~~~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT------------KNANILGFCWTSS-TEIAFIT 130 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc------------CcceeEEEEEecC-eeEEEEe
Confidence 44558999999999999999999999999998655443333222211 1225888999865 5677777
Q ss_pred cCCeEEEEECCCC-eeeEEeeccCCCeEEEEEeCCCCCEEEEee-CCCeEEEEecc
Q 013436 247 SDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRR 300 (443)
Q Consensus 247 ~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~~ 300 (443)
..| +-+|-+... ..++..+.|.-.|+-..|++...-.+.+.+ ..+.+.-+.++
T Consensus 131 ~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 131 DQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFR 185 (657)
T ss_pred cCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEe
Confidence 666 667765443 234445577888888888843333333333 33444444444
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.0088 Score=60.02 Aligned_cols=102 Identities=21% Similarity=0.341 Sum_probs=76.3
Q ss_pred CCCEEEEEecCCeEEEEECCCCe-eeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC
Q 013436 238 DGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (443)
Q Consensus 238 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 316 (443)
.+..++.|+..|.|...|+...- +...-..-.++|++++|+ .+|..++.|-.+|.|.+||+. .++.++.+..|.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn-~dg~~l~~G~~~G~V~v~D~~----~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN-QDGSLLLAGLGDGHVTVWDMH----RAKILKVITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec-CCCceeccccCCCcEEEEEcc----CCcceeeeeecC
Confidence 45678999999999999987642 112222446799999996 999999999999999999998 778888877666
Q ss_pred CCeEEE---EECCCCCEEEEEeCCCCEEEEeCC
Q 013436 317 EGITFI---DSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 317 ~~v~~~---~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
.+.+.+ .+..++..++++...|. +|.+.
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 655544 45556667778777775 66654
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.63 E-value=0.41 Score=41.80 Aligned_cols=147 Identities=20% Similarity=0.158 Sum_probs=86.4
Q ss_pred ceEEEEECCCCCEEEEEE---CCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE-CCCC
Q 013436 126 RAYVSQFSADGSLFVAGF---QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSG 201 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd-~~~~ 201 (443)
.+...+++++++.+|.-. ....+.++..... ..... .+ ..++.-.|++++...++...+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~--~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL--TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec--cC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999877665 3334566554433 22221 11 2577889999987776666666666664 2333
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe---cCCeEEEEECC---CC------eeeEEeeccC
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLE---AN------KLSLRILAHT 269 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~ 269 (443)
......-... . -...|..+.+||||..++... .++.|++--+. .+ ..........
T Consensus 99 ~~~~~~v~~~----------~---~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 99 TGEPVEVDWP----------G---LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred cceeEEeccc----------c---cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 2211110000 0 001799999999999888766 34677776543 22 1111122335
Q ss_pred CCeEEEEEeCCCCCEEEEeeCCC
Q 013436 270 SDVNTVCFGDESGHLIYSGSDDN 292 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d~ 292 (443)
..+..+.|. .++.+++.+...+
T Consensus 166 ~~v~~v~W~-~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 166 SDVTDVAWS-DDSTLVVLGRSAG 187 (253)
T ss_pred Ccceeeeec-CCCEEEEEeCCCC
Confidence 688999997 6666666555443
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.62 E-value=0.12 Score=50.79 Aligned_cols=193 Identities=17% Similarity=0.170 Sum_probs=106.0
Q ss_pred EEEEECCCCCEEEEEECC------CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC-----eEEEE
Q 013436 128 YVSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIV 196 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-----~i~iw 196 (443)
.+++.. ++...++|+.| .++..||..++.... .......+.......+ +|...|+|+.|| .|-.|
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEE--CCEEEEEeccccccccccEEEe
Confidence 334443 45788888888 357888888774332 2222222222222222 688889999987 57788
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC------eEEEEECCCCeeeE--Eeecc
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD------CIYVYDLEANKLSL--RILAH 268 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~--~~~~~ 268 (443)
|..+.+........... .....+.+ +|...++|+.++ ++..||..+++... .+..-
T Consensus 402 Dp~~~~W~~va~m~~~r--------------~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~ 465 (571)
T KOG4441|consen 402 DPVTNKWTPVAPMLTRR--------------SGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR 465 (571)
T ss_pred cCCCCcccccCCCCcce--------------eeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc
Confidence 88887765544332211 12222222 688888887553 57889988775332 22211
Q ss_pred CCCeEEEEEeCCCCCEEEEeeCCC-----eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCC----
Q 013436 269 TSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA---- 339 (443)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~---- 339 (443)
... ..++. -++.+.+.|+.|+ +|..||.... ....+.........+....+ ++...++|+.||.
T Consensus 466 R~~-~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~--~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~ 538 (571)
T KOG4441|consen 466 RSG-FGVAV--LNGKIYVVGGFDGTSALSSVERYDPETN--QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLN 538 (571)
T ss_pred ccc-ceEEE--ECCEEEEECCccCCCccceEEEEcCCCC--ceeEcccCccccccccEEEE--CCEEEEEecccCccccc
Confidence 111 12333 4577888888776 3777887632 22223222222233323333 5677788887653
Q ss_pred -EEEEeCCC
Q 013436 340 -IKLWDIRK 347 (443)
Q Consensus 340 -i~iwd~~~ 347 (443)
|..||..+
T Consensus 539 ~ve~ydp~~ 547 (571)
T KOG4441|consen 539 TVECYDPET 547 (571)
T ss_pred eeEEcCCCC
Confidence 55555443
No 394
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.55 E-value=0.88 Score=45.94 Aligned_cols=89 Identities=19% Similarity=0.242 Sum_probs=54.9
Q ss_pred ccceEEEEEECCCCCeEEEEECCCeEEEEECCCC-----cee---ccccceecccCceeeccCCCCceecEEEEEEeCC-
Q 013436 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG-----TME---SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD- 238 (443)
Q Consensus 168 ~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~- 238 (443)
....|..|.++|+|.+|+..|..| |.|..+... ... .........-+..+ -.......|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~---~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF---FTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhh---ccCCCCceEEEEEEcCCC
Confidence 345789999999999999998877 444444221 000 00000000000000 01134458999999995
Q ss_pred --CCEEEEEecCCeEEEEECCCCe
Q 013436 239 --GRELVAGSSDDCIYVYDLEANK 260 (443)
Q Consensus 239 --~~~l~~~~~dg~i~iwd~~~~~ 260 (443)
+..|++-..|+++++||+....
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCCCC
Confidence 5789999999999999997543
No 395
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.55 E-value=0.0037 Score=51.48 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=68.1
Q ss_pred CCeEEEEECCCeEEEEECCCCceec-cccceecccCceeeccCCCCceecEEE-EEEeCCCCEEEEEecCCeEEEEECCC
Q 013436 181 QRHLVYASMSPIVHIVDVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEA 258 (443)
Q Consensus 181 ~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~~~~~~~l~~~~~dg~i~iwd~~~ 258 (443)
+..+++|+.+|.|.+|+........ ...... ..|.+ +.--.++.+..++..+|.|+.|++.-
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~----------------e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE----------------ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhccc----------------ccceeccccccccceeEEeccCCceeeecccc
Confidence 5679999999999999887221111 000000 02222 22223556888999999999999998
Q ss_pred CeeeEEeeccC-CCeEEEEEeCCCCCEEEEe--eCCCeEEEEecc
Q 013436 259 NKLSLRILAHT-SDVNTVCFGDESGHLIYSG--SDDNLCKVWDRR 300 (443)
Q Consensus 259 ~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~--~~d~~i~iwd~~ 300 (443)
++.+.....|+ .++.....+ ..+..++.+ |.|..++.|++.
T Consensus 134 ~k~~g~~g~h~~~~~e~~ivv-~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 134 NKVLGYVGQHNFESGEELIVV-GSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CceeeeeccccCCCcceeEEe-cCCceEEeeccccchhhhhcchh
Confidence 88777776676 555555554 566677777 777888888876
No 396
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.51 E-value=0.93 Score=44.35 Aligned_cols=195 Identities=16% Similarity=0.193 Sum_probs=110.9
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCCcc-ceE-------EEEEECCCCCeEEEEECCCeEEEEECCCCceeccc
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTV-------TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v-------~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 207 (443)
+..+++++.++.|.-+|..+|+.+-+........ ..+ ..+++ .+..++.++.++.|.-+|..+++..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778889999999997665533221100 000 01122 2346778888999999999999876544
Q ss_pred cceecccCceeeccCCCCceecEEE-EEEeCCCCEEEEEe------cCCeEEEEECCCCeeeEEeeccCC----------
Q 013436 208 NVTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRILAHTS---------- 270 (443)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~i~~-l~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~---------- 270 (443)
........ ..+.+ -... ++ .++++. .+|.|.-+|.++++.+-++..-..
T Consensus 147 ~~~~~~~~------------~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~ 212 (527)
T TIGR03075 147 KNGDYKAG------------YTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADK 212 (527)
T ss_pred cccccccc------------ccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccc
Confidence 33211100 01111 1111 34 455543 268899999999987766542111
Q ss_pred ---------------------Ce-EEEEEeCCCCCEEEEeeCC-----C-----------eEEEEecccCCCCCceeeee
Q 013436 271 ---------------------DV-NTVCFGDESGHLIYSGSDD-----N-----------LCKVWDRRCLNVKGKPAGVL 312 (443)
Q Consensus 271 ---------------------~v-~~i~~~~~~~~~l~~~~~d-----~-----------~i~iwd~~~~~~~~~~~~~~ 312 (443)
.+ ..+++ ++...+++.+..+ + .|.-.|++ +++..-.+
T Consensus 213 ~~~~~~~~~tw~~~~~~~gg~~~W~~~s~-D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~----TG~~~W~~ 287 (527)
T TIGR03075 213 PVGGEPGAKTWPGDAWKTGGGATWGTGSY-DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD----TGKIKWHY 287 (527)
T ss_pred ccccccccCCCCCCccccCCCCccCceeE-cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc----cCCEEEee
Confidence 01 12344 2444555555422 1 45556666 67766655
Q ss_pred cCCCCCe---------EEEEECCCCC---EEEEEeCCCCEEEEeCCCCCCc
Q 013436 313 MGHLEGI---------TFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 313 ~~~~~~v---------~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
+.....+ .-+.+..+|+ .++.+.++|.+.+.|-++++.+
T Consensus 288 Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 288 QTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 5322211 1123334665 7789999999999999998764
No 397
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.50 E-value=0.51 Score=44.05 Aligned_cols=97 Identities=24% Similarity=0.182 Sum_probs=55.7
Q ss_pred EEEECCCCCeEEEEECCCeEEE---EECCC-CceeccccceecccCceeeccCCCCceecEEEEEEe-----------CC
Q 013436 174 DTSLSPDQRHLVYASMSPIVHI---VDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-----------TD 238 (443)
Q Consensus 174 ~i~~s~~~~~l~~~~~dg~i~i---wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-----------~~ 238 (443)
.++.+|++..||.+..+..+.+ |+... +........... ..-.......|+++.+- +|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~-------g~l~~~~~e~ITsi~clpl~s~~~s~~~~d 78 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWS-------GPLDDEPGECITSILCLPLSSQKRSTGGPD 78 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEee-------eeccCCCCCEEEEEEEEEeecccccCCCCC
Confidence 4678899999999887776555 54321 111111110000 00000000245555443 34
Q ss_pred CCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEe
Q 013436 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (443)
Q Consensus 239 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (443)
...+++|..+|.|++|.. +|..+..-.-|..+|..|...
T Consensus 79 w~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 79 WTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred cEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 678999999999999996 555554444677788777664
No 398
>PRK10115 protease 2; Provisional
Probab=96.49 E-value=1.2 Score=45.26 Aligned_cols=196 Identities=10% Similarity=0.042 Sum_probs=100.0
Q ss_pred CceEEEEECCCCCEEEEEECC-----CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC------CeE
Q 013436 125 SRAYVSQFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIV 193 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d------g~i 193 (443)
-.+..+.|||||++|+.+... -.|++.|+.+|..+.... ... -..++|++|++.|+.+..+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNV---EPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCc---ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 346778999999998876442 258899998874332211 111 1458999999877766542 367
Q ss_pred EEEECCCCc--eeccccceecccCceeeccCCCCceecEE-EEEEeCCCCEEEEEecC---CeEEEEECC--CCeeeEEe
Q 013436 194 HIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGSSD---DCIYVYDLE--ANKLSLRI 265 (443)
Q Consensus 194 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~d---g~i~iwd~~--~~~~~~~~ 265 (443)
+.+++.++. ...+..... . ... .+..+.++++++..+.. +.+.+++.. .+.....+
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~--------------~--~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKD--------------D--TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEECCCChhHCeEEEeeCC--------------C--CEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 888888773 222222110 0 112 23334478776655443 468888843 33322222
Q ss_pred eccCCCeEEEEEeCCCCCEEEEeeCC-CeEEEEecccCCCCCceeeeecCC-C-CCeEEEEECCCCCEEEEEeCCCCEEE
Q 013436 266 LAHTSDVNTVCFGDESGHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLMGH-L-EGITFIDSRGDGRYLISNGKDQAIKL 342 (443)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~s~~~dg~i~i 342 (443)
.........+. + ..+.+++....+ ..-+|..+... .......+..+ . ..|..+.+. .+.++++...++.-++
T Consensus 266 ~~~~~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l 340 (686)
T PRK10115 266 PRRKDHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTRVR--DEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSL 340 (686)
T ss_pred ECCCCCEEEEE-e-CCCEEEEEEcCCCCCceEEEecCC--CcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEE
Confidence 22222222222 2 223333322221 23333333211 11112233334 2 367778877 3345556666776666
Q ss_pred EeCC
Q 013436 343 WDIR 346 (443)
Q Consensus 343 wd~~ 346 (443)
+-+.
T Consensus 341 ~~~~ 344 (686)
T PRK10115 341 RQIN 344 (686)
T ss_pred EEEc
Confidence 5443
No 399
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.47 E-value=0.83 Score=43.37 Aligned_cols=159 Identities=17% Similarity=0.253 Sum_probs=85.8
Q ss_pred eEEEEEECCCCCeEEEE-ECCC----eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEE
Q 013436 171 TVTDTSLSPDQRHLVYA-SMSP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~ 245 (443)
.+....+|||++++|.+ +..| .|+++|+.+++..... +... ....+.|.++++.|+..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~----------------~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENP----------------KFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEE----------------ESEEEEECTTSSEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cccc----------------ccceEEEeCCCCEEEEE
Confidence 35578899999999865 3334 6999999999654321 1110 12239999998877665
Q ss_pred ecCC-----------eEEEEECCCCeee--EEeeccCCC--eEEEEEeCCCCCEEEEeeC---C-CeEEEEecccCCCCC
Q 013436 246 SSDD-----------CIYVYDLEANKLS--LRILAHTSD--VNTVCFGDESGHLIYSGSD---D-NLCKVWDRRCLNVKG 306 (443)
Q Consensus 246 ~~dg-----------~i~iwd~~~~~~~--~~~~~~~~~--v~~i~~~~~~~~~l~~~~~---d-~~i~iwd~~~~~~~~ 306 (443)
..+. .|+.|.+.+.... ..+...... ...+..+ .++++++.... + ..+.+.|+.......
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred EeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence 4332 3888888776432 344333333 5677776 77777665432 2 357777776210001
Q ss_pred ceeeeecCCCCCe-EEEEECCCCCEEEEEeC---CCCEEEEeCCCC
Q 013436 307 KPAGVLMGHLEGI-TFIDSRGDGRYLISNGK---DQAIKLWDIRKM 348 (443)
Q Consensus 307 ~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~ 348 (443)
.....+......+ ..+... .+.+++.... ++.|.-.++...
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~ 311 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADP 311 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTST
T ss_pred CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccccc
Confidence 2223333333333 344443 4444443322 355666666663
No 400
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.44 E-value=1.2 Score=45.53 Aligned_cols=124 Identities=14% Similarity=0.115 Sum_probs=70.9
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccc-----eEEEEEEC----------------CCCCeEEEEECCCeEE
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLS----------------PDQRHLVYASMSPIVH 194 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~i~~s----------------~~~~~l~~~~~dg~i~ 194 (443)
+..|+.++.++.|.-.|..+|+.+-+......... .+..+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777888999999999977655433221110 11222221 1345788889999999
Q ss_pred EEECCCCceeccccceec---ccCceeeccCCCCceecEEEEEEeC--CCCEEEEEec----------CCeEEEEECCCC
Q 013436 195 IVDVGSGTMESLANVTEI---HDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSS----------DDCIYVYDLEAN 259 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~----------dg~i~iwd~~~~ 259 (443)
-.|.++++....+..... ..++. .....-..+.-.| .+..+++|+. +|.|+-+|++++
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g-------~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG 346 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMG-------TTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG 346 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccC-------cCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence 999999987643322110 00000 0000000111112 1335666642 688999999999
Q ss_pred eeeEEee
Q 013436 260 KLSLRIL 266 (443)
Q Consensus 260 ~~~~~~~ 266 (443)
+.+-.+.
T Consensus 347 kl~W~~~ 353 (764)
T TIGR03074 347 ALVWAWD 353 (764)
T ss_pred cEeeEEe
Confidence 9888775
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.42 E-value=0.23 Score=47.24 Aligned_cols=115 Identities=13% Similarity=0.135 Sum_probs=70.1
Q ss_pred cEEEEEEeCC----CCEEEEEecCCeEEEEECC-----CCeeeEEeecc-----CCCeEEEEEeCCCCCEEEEeeCCCeE
Q 013436 229 GIFSLKFSTD----GRELVAGSSDDCIYVYDLE-----ANKLSLRILAH-----TSDVNTVCFGDESGHLIYSGSDDNLC 294 (443)
Q Consensus 229 ~i~~l~~~~~----~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~-----~~~v~~i~~~~~~~~~l~~~~~d~~i 294 (443)
.|..+.|.|- ...+++.-....|.||-+. +++.+..-..+ .--...+.|+ |....|++-.....-
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCcee
Confidence 5889999984 3345555567789999875 22322221111 1122456788 556666665555455
Q ss_pred EEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe-CCCCEEEEeCCC
Q 013436 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 347 (443)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 347 (443)
.+++++. ....+..-....+-|.|.+|.+||+.|+++- ..=.-+|||-..
T Consensus 137 V~~sV~~---d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHC---DSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred Eeeeeee---CCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 6677763 2333333334567899999999999887553 333467887554
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.065 Score=49.91 Aligned_cols=150 Identities=16% Similarity=0.209 Sum_probs=93.7
Q ss_pred CCCCEEE-EEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC-------eEEEEECCCeEEEEECCCCceec
Q 013436 134 ADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-------HLVYASMSPIVHIVDVGSGTMES 205 (443)
Q Consensus 134 ~~~~~l~-~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-------~l~~~~~dg~i~iwd~~~~~~~~ 205 (443)
.+.++|+ .+.....++-.|++.|+.+........ |+-+.+.|+.+ .-+.|-.+..|.-||++-....
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d----i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~- 417 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD----INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN- 417 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC----cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-
Confidence 3445544 344456688889999977765544333 77777888653 2234567778889998733221
Q ss_pred cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEE
Q 013436 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 285 (443)
.......+. + .......|.+-..+| ++++|+.+|.|++||--.......+++...+|..|..+ .+|++|
T Consensus 418 kl~~~q~kq---y------~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt-adGKwi 486 (644)
T KOG2395|consen 418 KLAVVQSKQ---Y------STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT-ADGKWI 486 (644)
T ss_pred eeeeeeccc---c------ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee-ccCcEE
Confidence 111111110 0 011134455555444 69999999999999973333444567888999999997 888888
Q ss_pred EEeeCCCeEEEEecc
Q 013436 286 YSGSDDNLCKVWDRR 300 (443)
Q Consensus 286 ~~~~~d~~i~iwd~~ 300 (443)
++.+ +..+.+.++.
T Consensus 487 l~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 487 LATC-KTYLLLIDTL 500 (644)
T ss_pred EEec-ccEEEEEEEe
Confidence 6555 4577777765
No 403
>PHA03098 kelch-like protein; Provisional
Probab=96.33 E-value=0.24 Score=48.87 Aligned_cols=103 Identities=10% Similarity=0.016 Sum_probs=54.1
Q ss_pred CCCeEEEEECCC------eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-----
Q 013436 180 DQRHLVYASMSP------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----- 248 (443)
Q Consensus 180 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----- 248 (443)
++..++.|+.++ .+..||..+++........... . ....+.+ ++..++.|+.+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R----------~----~~~~~~~--~~~lyv~GG~~~~~~~ 357 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR----------K----NPGVTVF--NNRIYVIGGIYNSISL 357 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc----------c----cceEEEE--CCEEEEEeCCCCCEec
Confidence 556667776543 5778888877764433222110 0 1112222 57777777765
Q ss_pred CeEEEEECCCCeeeEEee-ccCCCeEEEEEeCCCCCEEEEeeCC------CeEEEEecc
Q 013436 249 DCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDD------NLCKVWDRR 300 (443)
Q Consensus 249 g~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d------~~i~iwd~~ 300 (443)
..+..||..+++-...-. .+...-.+++. -++++.+.|+.+ ..+..||..
T Consensus 358 ~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 358 NTVESWKPGESKWREEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred ceEEEEcCCCCceeeCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCC
Confidence 357888987765322111 01111112222 356677777632 357888876
No 404
>PHA02790 Kelch-like protein; Provisional
Probab=96.27 E-value=0.52 Score=45.61 Aligned_cols=185 Identities=9% Similarity=0.018 Sum_probs=92.4
Q ss_pred CCCCEEEEEECCC-----eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC--eEEEEECCCCceecc
Q 013436 134 ADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGTMESL 206 (443)
Q Consensus 134 ~~~~~l~~g~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~ 206 (443)
.++.++++|+.++ .+..||..++..... ............+. -++...++|+.++ .+..||..+++....
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~-~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPI-PPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEEC-CCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3456677777543 477788887633221 11222221122222 3677777877643 577888776655443
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC---eEEEEECCCCeeeEE--eeccCCCeEEEEEeCCC
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLR--ILAHTSDVNTVCFGDES 281 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~ 281 (443)
........ ....+. -+|+..+.|+.++ .+..||.++++-... +...... .+++. -+
T Consensus 347 ~~l~~~r~--------------~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~--~~ 407 (480)
T PHA02790 347 PSLLKPRC--------------NPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALV--FG 407 (480)
T ss_pred CCCCCCCc--------------ccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEE--EC
Confidence 33221110 111122 2677777777553 477889877653321 1111111 12222 34
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CCEEEEeCCC
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRK 347 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 347 (443)
+.+.+.|+ .+.+||.... ....+..+.........+.+ +++..+.||.+ ..+..||..+
T Consensus 408 ~~IYv~GG---~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 408 RRLFLVGR---NAEFYCESSN--TWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CEEEEECC---ceEEecCCCC--cEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 55666663 4678887632 22222222211222222223 67778888754 3577777765
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.21 E-value=0.85 Score=40.73 Aligned_cols=195 Identities=13% Similarity=0.174 Sum_probs=86.7
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeee--cCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL--AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 201 (443)
...+..|.|..+..-+++|. .+.| +-..+.|+.-..... .........+|.|..+ ..++ ++..+. .+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g~-ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPGL-LLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETTE-EEEESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCce-EEEecCCC
Confidence 45789999996666677764 4532 223333322222111 1111234677877543 3344 444553 33344444
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee-eEEeeccCCCeEEEEEeCC
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFGDE 280 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~ 280 (443)
+.-.......... + ....+....++..++ ++..|.|+.=. ..++. ........+.+..+..+ +
T Consensus 91 ~tW~~v~l~~~lp----------g---s~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~-~ 154 (302)
T PF14870_consen 91 KTWERVPLSSKLP----------G---SPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS-S 154 (302)
T ss_dssp SS-EE----TT-S----------S----EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE--T
T ss_pred CCcEEeecCCCCC----------C---CeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC-C
Confidence 3322221111000 1 222333333443333 34456544322 22322 22233445678888876 8
Q ss_pred CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 281 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
++.+++++..-....-||.- ...-..........|..+.|.|++.+.+.+ ..|.|++=+
T Consensus 155 dG~~vavs~~G~~~~s~~~G----~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDPG----QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp TS-EEEEETTSSEEEEE-TT-----SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CCcEEEEECcccEEEEecCC----CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 89988888766666777753 211122222345789999999998765544 788888877
No 406
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.21 E-value=1.1 Score=41.99 Aligned_cols=150 Identities=12% Similarity=0.111 Sum_probs=87.4
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-----CCCEEEEEecCCeEEEE
Q 013436 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVY 254 (443)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-----~~~~l~~~~~dg~i~iw 254 (443)
+...+++|+..|.++||+...+.......+.+.. -..+|..+..-+ +...||+ -.-..+.||
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~------------l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY 102 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ------------LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVY 102 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe------------cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEE
Confidence 3468999999999999998655432211111110 122677666532 2234444 446678888
Q ss_pred ECCCC--e-------eeEEeeccCC--CeEEEEEeCC---C-CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCe
Q 013436 255 DLEAN--K-------LSLRILAHTS--DVNTVCFGDE---S-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (443)
Q Consensus 255 d~~~~--~-------~~~~~~~~~~--~v~~i~~~~~---~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v 319 (443)
.+... . .+..+..|.- ....+++-|- . ..+|.+-+.||.+.+|+-+ .......+.+ ---.
T Consensus 103 ~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe----~~~f~~~lp~-~llP 177 (418)
T PF14727_consen 103 SVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE----SFAFSRFLPD-FLLP 177 (418)
T ss_pred EEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC----cEEEEEEcCC-CCCC
Confidence 77321 1 1222223322 2334444322 2 3678888999999999986 3222233332 2222
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 320 TFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
..+.+.+....|++++.+..+.-|....
T Consensus 178 gPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 178 GPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred cCeEEeecCCEEEEecCceeEEEecHHH
Confidence 3467788888899999888898887654
No 407
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=1.1 Score=44.00 Aligned_cols=187 Identities=12% Similarity=0.041 Sum_probs=93.9
Q ss_pred CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCC
Q 013436 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 225 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (443)
-.|+||+... ..+.+..- .|. .+-.+.|+.+.. |++...+|++++|++-....... ..... .
T Consensus 64 ~~I~If~~sG-~lL~~~~w--~~~-~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~-svg~e------------~ 125 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLGRILW--KHG-ELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESN-SVGFE------------S 125 (829)
T ss_pred eeEEEEeccc-cchHHHHh--cCC-CeeeecccCCce-EEEEeccceEEEeecchhhhccc-ccccc------------c
Confidence 3488888764 34443222 222 688899987765 66668999999999875543321 11000 0
Q ss_pred ceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec---cCCCeEEEEEeCCCCCEEEEeeCCCe--EEEEecc
Q 013436 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLIYSGSDDNL--CKVWDRR 300 (443)
Q Consensus 226 ~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~~d~~--i~iwd~~ 300 (443)
....|..+.|..+|-.++ ..+|.+.+-.-.....+.++.. ...+.+|-...++.......-.-+-. ..++...
T Consensus 126 ~~~~I~ec~~f~~GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~ 203 (829)
T KOG2280|consen 126 QMSDIVECRFFHNGVAVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVE 203 (829)
T ss_pred ccCceeEEEEecCceEEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhccccee
Confidence 111455566655664333 3455555443222212233322 11111222222221111100111100 0111111
Q ss_pred cCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccC
Q 013436 301 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (443)
. .......+....+.+..+..||+.++|+--..+|.|.+-+....+..-.++
T Consensus 204 ~---~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 204 E---SRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred c---ccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 0 111122222234678889999999999999999999998877755544444
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.99 E-value=0.39 Score=47.08 Aligned_cols=113 Identities=13% Similarity=0.113 Sum_probs=72.8
Q ss_pred EEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee-ccCCCeEEEEEeC-CCCCEEEEeeCCCeEEEEecc-----cCCCC
Q 013436 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGD-ESGHLIYSGSDDNLCKVWDRR-----CLNVK 305 (443)
Q Consensus 233 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~-~~~~~l~~~~~d~~i~iwd~~-----~~~~~ 305 (443)
+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.++.|.. ++++.+++.+..+.|.+|--. ...+.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3344445544444455679999998887443322 4578899999963 677888888888899988642 11122
Q ss_pred Cceeeee--cCCC-CCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 306 GKPAGVL--MGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 306 ~~~~~~~--~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
..++..+ ..|. .+|.+..|.++|.+++.++ +.+.|+|-.-
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~~ 157 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKWL 157 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCCc
Confidence 2333333 2333 5788999999997665553 5688886543
No 409
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.92 E-value=1.4 Score=40.84 Aligned_cols=158 Identities=11% Similarity=0.099 Sum_probs=76.0
Q ss_pred EEECCCCCEEEEEEC------CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC--------------
Q 013436 130 SQFSADGSLFVAGFQ------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------- 189 (443)
Q Consensus 130 ~~~s~~~~~l~~g~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-------------- 189 (443)
+-.-|+|+.++++-. -|.+.++|-++.+.............--.++-|.|..+.+++...
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 344478888887533 245888888876555544443333444677888888888887542
Q ss_pred ------CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC--CCE-EEEEecCCeEEEEEC-CCC
Q 013436 190 ------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRE-LVAGSSDDCIYVYDL-EAN 259 (443)
Q Consensus 190 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~-l~~~~~dg~i~iwd~-~~~ 259 (443)
-.++++||+.+.+..+...+.... .-...+.|..+ ..+ ++.+.-...|..|-- ..+
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g--------------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g 280 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEG--------------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG 280 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTE--------------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCC--------------CceEEEEecCCCCccceEEEEeccceEEEEEEcCCC
Confidence 248999999999887776654311 13455666543 333 333333445555533 333
Q ss_pred e----eeEEeecc-----------------CCCeEEEEEeCCCCCEEEEee-CCCeEEEEecccC
Q 013436 260 K----LSLRILAH-----------------TSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCL 302 (443)
Q Consensus 260 ~----~~~~~~~~-----------------~~~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 302 (443)
+ .+..+... ..-|+.|..| .+.++|+.++ .+|.|+.||+...
T Consensus 281 ~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 281 EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE--TTS-EEEEEETTTTEEEEEE-SST
T ss_pred CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-cCCCEEEEEcccCCcEEEEecCCC
Confidence 2 12222111 3457899998 6666666554 7899999999853
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.83 E-value=1.4 Score=42.30 Aligned_cols=156 Identities=13% Similarity=0.167 Sum_probs=85.5
Q ss_pred CCceEEEEECCCCCEEE-EEE--CCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC----CCeEEEEECCCeEEEE
Q 013436 124 TSRAYVSQFSADGSLFV-AGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD----QRHLVYASMSPIVHIV 196 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~-~g~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~----~~~l~~~~~dg~i~iw 196 (443)
-.+|..++|. ||+.++ +.- .+|.+++=|.. .+.+ . . -|..+.|.|- ...|++.-....|.+|
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---viGq---F-E---hV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VIGQ---F-E---HVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCcc---Eeec---c-c---eeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 4568889998 555444 432 23433332211 1211 1 1 2889999985 3345555666789999
Q ss_pred ECCCCceec--cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe--eeEEeeccCCCe
Q 013436 197 DVGSGTMES--LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDV 272 (443)
Q Consensus 197 d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v 272 (443)
.+....... ........-+..|+.. -..+.|+|....|++-.....=.+++++... ....+ ...+.|
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvL--------pQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~I 158 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVL--------PQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLI 158 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccC--------CCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceE
Confidence 986322111 1111111100011110 1247899999888777666544566665442 22233 557789
Q ss_pred EEEEEeCCCCCEEEEe-eCCCeEEEEecc
Q 013436 273 NTVCFGDESGHLIYSG-SDDNLCKVWDRR 300 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~-~~d~~i~iwd~~ 300 (443)
.|.||. .+|+.|+++ +..=.-++||-.
T Consensus 159 hCACWT-~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 159 HCACWT-KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEec-CcCCEEEEEeCCeEEEEEecCc
Confidence 999998 677766554 444466888864
No 411
>PHA02790 Kelch-like protein; Provisional
Probab=95.77 E-value=0.92 Score=43.95 Aligned_cols=142 Identities=6% Similarity=-0.116 Sum_probs=69.1
Q ss_pred CCCeEEEEECCC-----eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC--CeEE
Q 013436 180 DQRHLVYASMSP-----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--DCIY 252 (443)
Q Consensus 180 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d--g~i~ 252 (443)
++..+++|+.++ .+..||..+++............ .. +++ .-++...++|+.+ ..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~--------------~~-~~v-~~~~~iYviGG~~~~~sve 334 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRL--------------YA-SGV-PANNKLYVVGGLPNPTSVE 334 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhh--------------cc-eEE-EECCEEEEECCcCCCCceE
Confidence 355566776543 57778888776554443322110 11 112 2367777777753 3588
Q ss_pred EEECCCCeeeEEeeccCCCeE--EEEEeCCCCCEEEEeeCCC---eEEEEecccCCCCCceeeeecCCCCCeEEEEECCC
Q 013436 253 VYDLEANKLSLRILAHTSDVN--TVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (443)
Q Consensus 253 iwd~~~~~~~~~~~~~~~~v~--~i~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (443)
.||..+++-.. +..-..+.. +++. -++++.+.|+.++ .+..||.+.. ....+..+.........+.+ +
T Consensus 335 ~ydp~~n~W~~-~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~~~~--~ 407 (480)
T PHA02790 335 RWFHGDAAWVN-MPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCALVF--G 407 (480)
T ss_pred EEECCCCeEEE-CCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceEEEE--C
Confidence 88877654322 111111111 2222 3567777777553 4677887622 11111111111111122222 5
Q ss_pred CCEEEEEeCCCCEEEEeCCC
Q 013436 328 GRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~ 347 (443)
++..+.|+ .+.+||..+
T Consensus 408 ~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 408 RRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CEEEEECC---ceEEecCCC
Confidence 66666663 467777654
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.65 E-value=1.4 Score=38.59 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=87.9
Q ss_pred eEEEEEECCCCCeEEEEE--C-CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec
Q 013436 171 TVTDTSLSPDQRHLVYAS--M-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~--~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 247 (443)
.+...+++++++.++... . ...+.++.......... . + ..+..-.|++++...++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~----------------g--~~l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-T----------------G--GSLTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-c----------------C--CccccccccCCCCEEEEEcC
Confidence 588899999999887766 2 23555555433222111 0 0 05677789999887777666
Q ss_pred CCeEEEEE-CCCCeee-EEeec--cCCCeEEEEEeCCCCCEEEEee---CCCeEEEEecccCCCCC------ceeeeecC
Q 013436 248 DDCIYVYD-LEANKLS-LRILA--HTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKG------KPAGVLMG 314 (443)
Q Consensus 248 dg~i~iwd-~~~~~~~-~~~~~--~~~~v~~i~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~------~~~~~~~~ 314 (443)
+....++. ...+... ..... ....|..+.++ ++|..++... .++.|.+--+.... .+ .+......
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vS-pDG~RvA~v~~~~~~~~v~va~V~r~~-~g~~~~l~~~~~~~~~ 163 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVS-PDGTRVAVVVEDGGGGRVYVAGVVRDG-DGVPRRLTGPRRVAPP 163 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEEC-CCCcEEEEEEecCCCCeEEEEEEEeCC-CCCcceeccceEeccc
Confidence 66666663 3333221 22221 12289999998 7777766655 34677766543211 12 22222333
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCC
Q 013436 315 HLEGITFIDSRGDGRYLISNGKDQ 338 (443)
Q Consensus 315 ~~~~v~~~~~~~~~~~l~s~~~dg 338 (443)
....++.++|.+++.+++.+...+
T Consensus 164 ~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 164 LLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ccCcceeeeecCCCEEEEEeCCCC
Confidence 456899999999998777665543
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.60 E-value=0.41 Score=47.00 Aligned_cols=122 Identities=14% Similarity=0.112 Sum_probs=71.2
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEEC--CCCCeEEEEECCCeEEEEECCCCcee
Q 013436 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s--~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
+.-+.-|.-++..++-+....+.|||...+........ .....|.++.|. |+++.+++.+....|.+|.-......
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34444444555555555556799999998854333222 345679999985 68999999999999999864321111
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEEC
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 256 (443)
.......... ......... .+|.+..|.++|..++.+ ...+.|+|-
T Consensus 110 ~~~p~w~~i~--~i~i~~~T~--h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIR--KIDISSHTP--HPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cCCcccceeE--EEEeecCCC--CCccceeEecCCeEEEEe--CCEEEEECC
Confidence 0000000000 001111112 378899999999754443 456888874
No 414
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.58 E-value=2 Score=40.11 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=33.6
Q ss_pred CCCEEEEEEC-CCeEEEEECCCC-eEEEEeeecCC-ccceEEEEEECCCCCeEEEEECC-----------CeEEEEECCC
Q 013436 135 DGSLFVAGFQ-ASQIRIYDVERG-WKIQKDILAKS-LRWTVTDTSLSPDQRHLVYASMS-----------PIVHIVDVGS 200 (443)
Q Consensus 135 ~~~~l~~g~~-d~~i~iwd~~~~-~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~~~~d-----------g~i~iwd~~~ 200 (443)
++++.+.|+. +..+.++|+... ........... .+.....+. -++.+.+.|+.. ..+..||..+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~--~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~ 115 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAF--IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT 115 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEE--ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC
Confidence 4555554443 445777887631 11111111111 111122222 256677777653 2477788887
Q ss_pred Cceecc
Q 013436 201 GTMESL 206 (443)
Q Consensus 201 ~~~~~~ 206 (443)
.+....
T Consensus 116 n~W~~~ 121 (376)
T PRK14131 116 NSWQKL 121 (376)
T ss_pred CEEEeC
Confidence 765543
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.55 E-value=2.1 Score=43.28 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=54.1
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCC----------CeE--EEE------eeecCCccceEEEEEECCC---CC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER----------GWK--IQK------DILAKSLRWTVTDTSLSPD---QR 182 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~----------~~~--~~~------~~~~~~~~~~v~~i~~s~~---~~ 182 (443)
.-.|..+.++|+|++||..|..| |.|-.+.. |.. ... ..........|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34689999999999999988866 44443321 111 111 1112344567999999996 58
Q ss_pred eEEEEECCCeEEEEECCCC
Q 013436 183 HLVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~ 201 (443)
.|++-..|+.+++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 9999999999999999754
No 416
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.51 E-value=1.5 Score=38.01 Aligned_cols=112 Identities=17% Similarity=0.067 Sum_probs=71.6
Q ss_pred cEEEEEEeCCCCEEEEEecCC--eEEEEECCCCeeeEEeecc-CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCC
Q 013436 229 GIFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (443)
Q Consensus 229 ~i~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 305 (443)
-...+.|..+|.++-+.+.-| .|+.+|+.+++......-. .-.--.++.. ++++....-.++...+||.. +
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~----t 119 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPN----T 119 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETT----T
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccc----c
Confidence 355688877888777777666 6999999999876655422 2223345553 34455555678899999998 6
Q ss_pred CceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 306 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
.+.+.++.- .+.=..++. +++.|+.+.....++++|..+.+
T Consensus 120 l~~~~~~~y-~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 120 LKKIGTFPY-PGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp TEEEEEEE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-S
T ss_pred ceEEEEEec-CCcceEEEc--CCCEEEEECCccceEEECCcccc
Confidence 677776653 234456663 56677777667789999988754
No 417
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.46 E-value=3.5 Score=42.09 Aligned_cols=187 Identities=13% Similarity=0.127 Sum_probs=113.3
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC--------------CeEEEEECCCCce
Q 013436 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------------PIVHIVDVGSGTM 203 (443)
Q Consensus 138 ~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~~ 203 (443)
.|+.+. .+.+++.-++.-+++.... -........+++.+....+++.+.- ..++++|-++-+.
T Consensus 686 ~l~~~~-~~~l~i~tid~iqkl~irt--vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 686 SLASAN-GGALTIGTIDEIQKLHIRT--VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred eEEEec-CCceEEEEecchhhcceee--ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 344443 3556666655432222111 1122246667777644444443321 1356666666555
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEec----------CCeEEEEECCCCeeeEEeec--cCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS----------DDCIYVYDLEANKLSLRILA--HTS 270 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~--~~~ 270 (443)
.......... ....|.++.|..| +.++++|.. .|.|.++.....+.+..... -.+
T Consensus 763 l~~hef~~~E------------~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 763 LSSHEFERNE------------TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred Eeeccccccc------------eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 4443333221 1225666778887 678888753 47888888776433333322 245
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.+.++.. -+++++| +-+..|++|+.. ..+.++.-..+..++..+...-.|..+++|..-+.+.+-..+.
T Consensus 831 av~aL~~--fngkllA--~In~~vrLye~t----~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 831 AVYALVE--FNGKLLA--GINQSVRLYEWT----TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred ceeehhh--hCCeEEE--ecCcEEEEEEcc----ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 5666654 4576665 455689999997 6667777778888999999988999999998888887776655
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=0.43 Score=48.95 Aligned_cols=152 Identities=9% Similarity=0.024 Sum_probs=91.7
Q ss_pred eEEEEEECCCCCeEEEE--ECCCeEEEEECCCCceeccccceeccc-CceeeccCCCCceecEEEEEEeCCC-CEEEEEe
Q 013436 171 TVTDTSLSPDQRHLVYA--SMSPIVHIVDVGSGTMESLANVTEIHD-GLDFSAADDGGYSFGIFSLKFSTDG-RELVAGS 246 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~ 246 (443)
++..+...+|+...++. +.+-.|..||+++-............. ...+ ....-..++.|+|.- ...++..
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~------ek~vf~~~~~wnP~vp~n~av~l 175 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSF------EKPVFQLKNVWNPLVPLNSAVDL 175 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchh------ccccccccccccCCccchhhhhc
Confidence 45666677787655543 333378899987654332211110000 0000 011135578888843 2466777
Q ss_pred cCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC----CCCCeEEE
Q 013436 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGITFI 322 (443)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~ 322 (443)
.|+.|++.-+........-.......++++|+ +.|+.++.|-..|++.-|... .+....+.+ ....|.+|
T Consensus 176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~-----leik~~ip~Pp~~e~yrvl~v 249 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS-----LEIKSEIPEPPVEENYRVLSV 249 (1405)
T ss_pred cccchhhhhhhhhhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecc-----cceeecccCCCcCCCcceeEE
Confidence 88989888765443222222345678999998 889999999999999988763 333322221 14679999
Q ss_pred EECCCCCEEEEE
Q 013436 323 DSRGDGRYLISN 334 (443)
Q Consensus 323 ~~~~~~~~l~s~ 334 (443)
.|-....++++-
T Consensus 250 ~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 250 TWLSTQEFLVVY 261 (1405)
T ss_pred EEecceeEEEEe
Confidence 998777776654
No 419
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.17 E-value=2.5 Score=38.66 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=34.5
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeE---EEEe-eecCCccceEEEEEECCC
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK---IQKD-ILAKSLRWTVTDTSLSPD 180 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~---~~~~-~~~~~~~~~v~~i~~s~~ 180 (443)
..+.|+|.|||++|++ -..|.|++++ ..+.. +... ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 3578999999987775 4689999999 44433 1111 112233446899999995
No 420
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.62 Score=42.96 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=70.7
Q ss_pred ecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE----eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCC
Q 013436 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR----ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 303 (443)
Q Consensus 228 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 303 (443)
++|.++.|++|.+.+|+--.+..|.+++....+.... -+..+..|...+|+ .+ .-+|.-...| +-+|-...
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~p-- 141 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVLP-- 141 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEch--
Confidence 3899999999999999999999999999854433222 22344568889997 33 4455444443 56666541
Q ss_pred CCCceeeeecCCCCCeEEEEECCCCCEEEEE
Q 013436 304 VKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 304 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 334 (443)
....++..+.|...|+...|.++.+.++-+
T Consensus 142 -ekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 142 -EKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred -hhhhhhhhhhcccCccEEEEccccceEeee
Confidence 345566667788899999999988765433
No 421
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.09 E-value=0.14 Score=30.14 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=26.9
Q ss_pred CceEEEEECCCC---CEEEEEECCCeEEEEECCCC
Q 013436 125 SRAYVSQFSADG---SLFVAGFQASQIRIYDVERG 156 (443)
Q Consensus 125 ~~v~~~~~s~~~---~~l~~g~~d~~i~iwd~~~~ 156 (443)
++|.++.|||+. .+|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999864
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=0.17 Score=51.74 Aligned_cols=115 Identities=12% Similarity=0.023 Sum_probs=76.7
Q ss_pred cEEEEEEeCCCCEEEEE--ecCCeEEEEECCCCeee-----EEee------ccCCCeEEEEEeCCCCCEEEEeeCCCeEE
Q 013436 229 GIFSLKFSTDGRELVAG--SSDDCIYVYDLEANKLS-----LRIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (443)
Q Consensus 229 ~i~~l~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~-----~~~~------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~ 295 (443)
+|..+...+|++..++. +++-.|+.||+++-..- ..+. .......++.|+|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 56667777787654443 34447899998754211 1111 22344567888866566677888999999
Q ss_pred EEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+..+.. ....+..+ ......++++|+|.|+.++.|-..|++.-|...-
T Consensus 182 V~~~~~---~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 182 VKSTKQ---LAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhh---hhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 888762 12222222 2456789999999999999999999998886543
No 423
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.98 E-value=2.4 Score=37.35 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=113.4
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCC------CeEEEEeeec-C--CccceEEEEEECCCCC------------eE
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVER------GWKIQKDILA-K--SLRWTVTDTSLSPDQR------------HL 184 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~------~~~~~~~~~~-~--~~~~~v~~i~~s~~~~------------~l 184 (443)
.-+.++++|.+.+-++....+...+||... ...+.-.+.. . ......+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 467899999998888887788999999861 2122211111 1 1234577788875333 36
Q ss_pred EEEECCCeEEEEECCCCcee---ccccceecccCceeeccCCCCceecEEEEEEeC--CCCEEEEEe-cCCeEEEEECCC
Q 013436 185 VYASMSPIVHIVDVGSGTME---SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGS-SDDCIYVYDLEA 258 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~-~dg~i~iwd~~~ 258 (443)
+.+++||+|.-|...-+... ......... .+. --..+++.. .+.+|+.+. ..++|.++|-.-
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~----------~ga--vYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ----------QGN--VYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCC----------Ccc--eeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 77889999999985433321 111111100 011 122344443 345555553 468899998543
Q ss_pred CeeeE--Eee-----ccCCC--eE------EEEEe--CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec--CCCCCe
Q 013436 259 NKLSL--RIL-----AHTSD--VN------TVCFG--DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGI 319 (443)
Q Consensus 259 ~~~~~--~~~-----~~~~~--v~------~i~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v 319 (443)
.+... .+. ..-.+ |. -+.|. +++.+.=+.|..-|.|-+||. .+..++.+. +.-..-
T Consensus 172 ~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-----~G~l~~r~as~g~LNaP 246 (336)
T TIGR03118 172 RPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-----NGQLLRRVASSGRLNAP 246 (336)
T ss_pred ccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-----CCcEEEEeccCCcccCC
Confidence 32110 010 00000 10 01111 122222233444578999998 578877774 233345
Q ss_pred EEEEECC------CCCEEEEEeCCCCEEEEeCCCC
Q 013436 320 TFIDSRG------DGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 320 ~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
+.|+..| .+.+|+-.-.||+|..+|..+.
T Consensus 247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 5676655 5677777777999999999874
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.97 E-value=2.2 Score=42.58 Aligned_cols=163 Identities=12% Similarity=0.128 Sum_probs=91.8
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEE------eeec-------------CCccceEEEEEECC--CCCeEEEEECCCeEE
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQK------DILA-------------KSLRWTVTDTSLSP--DQRHLVYASMSPIVH 194 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~------~~~~-------------~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~ 194 (443)
..+++++. .+.|.||+.+.-..... .... ......|+.|.... ....|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777775 57899999865322110 0000 00112355554433 446788999999999
Q ss_pred EEECCCCce--ecc-ccceecccCceeeccCCCCceecEEEEEEe--CCCCEEEEEecCCeEEEEECCC--Cee-eEEee
Q 013436 195 IVDVGSGTM--ESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEA--NKL-SLRIL 266 (443)
Q Consensus 195 iwd~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~l~~~~~dg~i~iwd~~~--~~~-~~~~~ 266 (443)
+|.+++--. ... .............+.-.......++.++++ ...++||++++...|.||-... .+. ...-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 997642100 000 000000000000000001122378999999 8889999999988888875433 111 11111
Q ss_pred ccCCCeEEEEEeCCC----CC-EEEEeeCCCeEEEEec
Q 013436 267 AHTSDVNTVCFGDES----GH-LIYSGSDDNLCKVWDR 299 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~----~~-~l~~~~~d~~i~iwd~ 299 (443)
.+...|.+|+|.+.+ |. .+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 366788999997543 22 7888999999999888
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.89 E-value=1.7 Score=40.48 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=78.9
Q ss_pred CceEEEEECCCCCEEEEEE-----------CCC-eEEEEECCC--CeEEEEeeecCCccceEEEEEECCCCCeEEEEECC
Q 013436 125 SRAYVSQFSADGSLFVAGF-----------QAS-QIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~-----------~d~-~i~iwd~~~--~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d 190 (443)
.....++|.++|+++++-. ..+ .|.+++-.+ |..-......... .....+++.+++ |+++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-SMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-CCccceeEecCC--EEEeCCC
Confidence 3467889999999877753 223 677776433 2211111122222 236789999988 4444444
Q ss_pred CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-------------------CCeE
Q 013436 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------------DDCI 251 (443)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-------------------dg~i 251 (443)
...++.+........ ........++.. ....+......++|.|||.+.++-+. .|.|
T Consensus 91 ~i~~~~d~~gdg~ad-~~~~~l~~~~~~---~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 91 DILFLRDKDGDDKAD-GEREVLLSGFGG---QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred eEEEEeCCCCCCCCC-CccEEEEEccCC---CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 333333443221110 000000000000 00012235778999999986665441 1456
Q ss_pred EEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee
Q 013436 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289 (443)
Q Consensus 252 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 289 (443)
.-+|..+++. ..+.........++|+ +.++++++-.
T Consensus 167 ~r~~pdg~~~-e~~a~G~rnp~Gl~~d-~~G~l~~tdn 202 (367)
T TIGR02604 167 FRYNPDGGKL-RVVAHGFQNPYGHSVD-SWGDVFFCDN 202 (367)
T ss_pred EEEecCCCeE-EEEecCcCCCccceEC-CCCCEEEEcc
Confidence 6667665543 2232223345789997 6788876644
No 426
>PRK13684 Ycf48-like protein; Provisional
Probab=94.88 E-value=3 Score=38.16 Aligned_cols=155 Identities=11% Similarity=0.101 Sum_probs=86.0
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEE-EECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRI-YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
...++.+.+.|++.+++++.. |.+.. ++ ..++..... .......++++.+.++++.+++ +..|.+.+=..+.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPH--QRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEe--eCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCC
Confidence 567899999999887777644 54433 22 222222221 2233456899999999887665 456766432233333
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee---ccCCCeEEEEEeC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGD 279 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~ 279 (443)
.-........ .....+..+.+.|++..+++| .+|.|. .....++.-.... .-....+.+.+.
T Consensus 247 sW~~~~~~~~------------~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~- 311 (334)
T PRK13684 247 SWSKPIIPEI------------TNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL- 311 (334)
T ss_pred ccccccCCcc------------ccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe-
Confidence 2221111100 011257889999988755554 577554 3444444333322 222357788885
Q ss_pred CCCCEEEEeeCCCeEEEEec
Q 013436 280 ESGHLIYSGSDDNLCKVWDR 299 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~ 299 (443)
.++..+ ..+..|.|-.|+-
T Consensus 312 ~~~~~~-~~G~~G~il~~~~ 330 (334)
T PRK13684 312 DPEKGF-VLGQRGVLLRYVG 330 (334)
T ss_pred CCCceE-EECCCceEEEecC
Confidence 444444 4566788877664
No 427
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.83 E-value=1.3 Score=33.71 Aligned_cols=114 Identities=16% Similarity=0.161 Sum_probs=64.0
Q ss_pred EEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-----CCCEEEEEecCC
Q 013436 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDD 249 (443)
Q Consensus 175 i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-----~~~~l~~~~~dg 249 (443)
-.|......|+.++.-|.|.|++........... ...+.+- .-...|++|+-.+ +...|+.|+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~----~~~i~~L-----Nin~~italaaG~l~~~~~~D~LliGt~t- 73 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQ----DSDISFL-----NINQEITALAAGRLKPDDGRDCLLIGTQT- 73 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccc----cCceeEE-----ECCCceEEEEEEecCCCCCcCEEEEeccc-
Confidence 4555556678888888999999876443211100 0000000 0111566665443 34567777654
Q ss_pred eEEEEECCCCeeeEEeeccCCCeEEEEEeC---CCCCEEEEeeCCCeEEEEecc
Q 013436 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGD---ESGHLIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~l~~~~~d~~i~iwd~~ 300 (443)
.|..||+..+.-+... .-...|+++.+.. ....++ ..+.+..|.-||..
T Consensus 74 ~llaYDV~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~-ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 74 SLLAYDVENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLV-IVGGNCSIQGFDYE 125 (136)
T ss_pred eEEEEEcccCchhhhh-hCccceeEEEEEecCCCCCcEE-EECceEEEEEeCCC
Confidence 5999999887654332 3346677776632 123344 44456678877764
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.73 E-value=1.7 Score=40.51 Aligned_cols=144 Identities=13% Similarity=0.164 Sum_probs=73.9
Q ss_pred eEEEEEECCCCCeEEEEE-----------CCC-eEEEEECCCC--ceeccccceecccCceeeccCCCCceecEEEEEEe
Q 013436 171 TVTDTSLSPDQRHLVYAS-----------MSP-IVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~-----------~dg-~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 236 (443)
....|+|.++|+++++-. ..+ .|.+++-..+ .......+... -.....+++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~--------------l~~p~Gi~~~ 80 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE--------------LSMVTGLAVA 80 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC--------------CCCccceeEe
Confidence 367799999998776643 123 6777764432 22111111110 0134678888
Q ss_pred CCCCEEEEEecCCeEEEE-ECCCC-----e--ee-EEeec----cCCCeEEEEEeCCCCCEEEEeeCC------------
Q 013436 237 TDGRELVAGSSDDCIYVY-DLEAN-----K--LS-LRILA----HTSDVNTVCFGDESGHLIYSGSDD------------ 291 (443)
Q Consensus 237 ~~~~~l~~~~~dg~i~iw-d~~~~-----~--~~-~~~~~----~~~~v~~i~~~~~~~~~l~~~~~d------------ 291 (443)
+++ |+++.... |..+ |.... + .+ ..+.. +......++|. +++.+.++-+..
T Consensus 81 ~~G--lyV~~~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g-pDG~LYv~~G~~~~~~~~~~~~~~ 156 (367)
T TIGR02604 81 VGG--VYVATPPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG-PDGWLYFNHGNTLASKVTRPGTSD 156 (367)
T ss_pred cCC--EEEeCCCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC-CCCCEEEecccCCCceeccCCCcc
Confidence 888 44444444 5444 54321 1 11 11222 12347789997 677765554421
Q ss_pred -------CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q 013436 292 -------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (443)
Q Consensus 292 -------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 337 (443)
|.|.-+|.. +..+..+.........++|+|+|+++++-..+
T Consensus 157 ~~~~~~~g~i~r~~pd-----g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 157 ESRQGLGGGLFRYNPD-----GGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CcccccCceEEEEecC-----CCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 234444432 22222222222345689999999987765433
No 429
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.59 E-value=0.14 Score=30.18 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.1
Q ss_pred CCeEEEEEeCCCC--CEEEEeeCCCeEEEEecc
Q 013436 270 SDVNTVCFGDESG--HLIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 270 ~~v~~i~~~~~~~--~~l~~~~~d~~i~iwd~~ 300 (443)
+.|.++.|+|..+ ++|+.+-.-+.|.|+|+|
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4688999997666 799999999999999998
No 430
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=6.1 Score=41.88 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=28.6
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCC
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER 155 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~ 155 (443)
|.......++|+|...++|.|...|.|++|-...
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccc
Confidence 3345677889999999999999999999997654
No 431
>PRK10115 protease 2; Provisional
Probab=94.19 E-value=7.4 Score=39.65 Aligned_cols=113 Identities=10% Similarity=0.068 Sum_probs=68.4
Q ss_pred ceEEEEEECCCCCeEEEEECC-C----eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEE
Q 013436 170 WTVTDTSLSPDQRHLVYASMS-P----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (443)
Q Consensus 170 ~~v~~i~~s~~~~~l~~~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 244 (443)
..+..+.|+||+++|+.+... | .|++.|+.++...... +.. .-..++|.+|++.|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~-----------------~~~~~~w~~D~~~~~y 188 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDN-----------------VEPSFVWANDSWTFYY 188 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccC-----------------cceEEEEeeCCCEEEE
Confidence 457788999999988876432 2 6889999877532110 000 1135899999987766
Q ss_pred EecC------CeEEEEECCCC--eeeEEeeccCCCeEEEEEeCCCCCEEEEeeC---CCeEEEEecc
Q 013436 245 GSSD------DCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRR 300 (443)
Q Consensus 245 ~~~d------g~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~iwd~~ 300 (443)
...+ ..|+.+++.++ +....+........-..+.+.++.+++..+. ++.+.+++..
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 5442 36888999887 3333443333333322333346666555443 3578888854
No 432
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.05 E-value=4.3 Score=36.37 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=57.8
Q ss_pred ecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCc
Q 013436 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (443)
Q Consensus 228 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 307 (443)
..+..+..++||++++++.......-||--...-...-+.....|.+|.|. +++.+.+.+ ..|.|++=+... ..+
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~-~~~~lw~~~-~Gg~~~~s~~~~---~~~ 219 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFS-PDGNLWMLA-RGGQIQFSDDPD---DGE 219 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE--TTS-EEEEE-TTTEEEEEE-TT---EEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceec-CCCCEEEEe-CCcEEEEccCCC---Ccc
Confidence 368888899999988888766656678854432222233456789999998 666665544 888888876210 111
Q ss_pred e----eeeecCCCCCeEEEEECCCCCEEEEEeCC
Q 013436 308 P----AGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (443)
Q Consensus 308 ~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 337 (443)
. +..+..-.-.+..++|.+++...++++..
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 1 11111223357899999998877777643
No 433
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.91 E-value=5 Score=36.66 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=66.9
Q ss_pred CCceEEEEECCCCCEEEEEECCCe------EEEEECCC--C----eEEEEeeecCCccc--------eEEEEEECCCCCe
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQ------IRIYDVER--G----WKIQKDILAKSLRW--------TVTDTSLSPDQRH 183 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~------i~iwd~~~--~----~~~~~~~~~~~~~~--------~v~~i~~s~~~~~ 183 (443)
-+.+..+.+.+++..+++-+.+|. +..+++.. + -.+.....+....+ ..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 355788889866555666666676 55555443 1 01111111111111 2447888778888
Q ss_pred EEEEECC------CeEEEEECCCCceeccccceecccCceeecc--CCCCceecEEEEEEeCCCCEEEEEec
Q 013436 184 LVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGSS 247 (443)
Q Consensus 184 l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~ 247 (443)
+++.-.+ ..|..++.. +.......+... +..... ...........|+++|+|+.|+++.+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~---~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAA---FLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccc---cccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 8777677 788888876 554333222211 000000 11124457899999999997776644
No 434
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.90 E-value=8.7 Score=39.44 Aligned_cols=92 Identities=11% Similarity=0.135 Sum_probs=52.4
Q ss_pred eEEEEECCCCeeeEEee--c--cCCCeEEEEEeCCCCCEEEEee----------CCCeEEEEecccCCCCCceeeeecC-
Q 013436 250 CIYVYDLEANKLSLRIL--A--HTSDVNTVCFGDESGHLIYSGS----------DDNLCKVWDRRCLNVKGKPAGVLMG- 314 (443)
Q Consensus 250 ~i~iwd~~~~~~~~~~~--~--~~~~v~~i~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~- 314 (443)
.++++|-++-+.+.... . ....|.++.|.+..+.++++|. ..|.|.++... ....+.....
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~----e~~~L~~v~e~ 826 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE----ELNSLELVAET 826 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe----cCCceeeeeee
Confidence 46777777665444322 1 1124555668744477777775 35788888876 3222322221
Q ss_pred -CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 315 -HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 315 -~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
-.+.+.++..- +|++||.- +..|++|+..+.
T Consensus 827 ~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~ 858 (1096)
T KOG1897|consen 827 VVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTE 858 (1096)
T ss_pred eeccceeehhhh-CCeEEEec--CcEEEEEEcccc
Confidence 23444444322 57766654 468999999884
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.44 E-value=2.2 Score=40.18 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=83.1
Q ss_pred CCCCCEEEE-EECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC-------eEEEEECCCeEEEEECCCCc-e
Q 013436 133 SADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-------HLVYASMSPIVHIVDVGSGT-M 203 (443)
Q Consensus 133 s~~~~~l~~-g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-------~l~~~~~dg~i~iwd~~~~~-~ 203 (443)
..|.++|+. |+....++-.|++.|+.+........ | -+.|.|+.+ .-++|-.+..|.-.|.+-.. .
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd----v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK 550 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD----V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK 550 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCc----c-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence 345555554 44455677778888866655433222 3 467777532 12334444444444543221 1
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (443)
+......... .+....+..- ....++++++..|.|++||--.......+++....|..+..+ .+|+
T Consensus 551 i~v~esKdY~------------tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvt-a~Gk 616 (776)
T COG5167 551 IKVVESKDYK------------TKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVT-ANGK 616 (776)
T ss_pred eeeeeehhcc------------cccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEee-cCCc
Confidence 1111111100 0011222222 245689999999999999965444445566778889999997 7888
Q ss_pred EEEEeeCCCeEEEEecc
Q 013436 284 LIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~ 300 (443)
++++.+.. .+.+-|++
T Consensus 617 ~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 617 HILATCKN-YLLLTDVP 632 (776)
T ss_pred EEEEeecc-eEEEEecc
Confidence 77766654 77777876
No 436
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.40 E-value=6.4 Score=36.28 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=18.1
Q ss_pred CCCeEEEEECC-----------CeEEEEECCCCceecc
Q 013436 180 DQRHLVYASMS-----------PIVHIVDVGSGTMESL 206 (443)
Q Consensus 180 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~ 206 (443)
++++.+.|+.+ ..+..||..+++....
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~ 100 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKL 100 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecC
Confidence 56777777753 2477788887766544
No 437
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=4 Score=33.79 Aligned_cols=170 Identities=15% Similarity=0.120 Sum_probs=86.1
Q ss_pred CCCEEEEEEC--CCeEEEEECCCCeEEEEeeecC--CccceEEEEEECCCCCeE-EEEECCCeEEEEECCCCceeccccc
Q 013436 135 DGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAK--SLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANV 209 (443)
Q Consensus 135 ~~~~l~~g~~--d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 209 (443)
+|.++.+.+. ...|++||+.+|+.+....... -....++. -+..+ +-.-.+|....+|..+-+....+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 4555666554 3469999999986655433221 00111211 12222 2334677778888877665444332
Q ss_pred eecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee----c-cCCCeEEEEEeCCCCCE
Q 013436 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL----A-HTSDVNTVCFGDESGHL 284 (443)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~-~~~~v~~i~~~~~~~~~ 284 (443)
.. .-+.++ .|+..|+.++....++.-|.++-....+.. + .-..++.+.| -+|.+
T Consensus 130 ~G-----------------eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~--VdG~l 188 (262)
T COG3823 130 EG-----------------EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW--VDGEL 188 (262)
T ss_pred CC-----------------cceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee--eccEE
Confidence 21 233343 355557776666667777765543332222 1 1123344555 24444
Q ss_pred EEEeeCCCeEEEEecccCCCCCceeeee------------cCCCCCeEEEEECCCC-CEEEEE
Q 013436 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVL------------MGHLEGITFIDSRGDG-RYLISN 334 (443)
Q Consensus 285 l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~-~~l~s~ 334 (443)
.|-.-.+..|...|.. +++.+..+ ..|....+.+++.|++ +++++|
T Consensus 189 yANVw~t~~I~rI~p~----sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 189 YANVWQTTRIARIDPD----SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEeeeeecceEEEcCC----CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 4433333344444443 33333222 2345567889999987 455555
No 438
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.36 E-value=3 Score=34.82 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=63.0
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC---C---eEEEE-
Q 013436 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---D---CIYVY- 254 (443)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d---g---~i~iw- 254 (443)
+.|..+...+.|.+|++.+........+... +.|..+.++..|++|++--.+ . .+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---------------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~ 93 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---------------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF 93 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---------------hheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence 4455556667899999985554433333322 278999999999999996433 2 45664
Q ss_pred --ECC--CCeeeE-Eeec---------------------cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecc
Q 013436 255 --DLE--ANKLSL-RILA---------------------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 255 --d~~--~~~~~~-~~~~---------------------~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~ 300 (443)
... ..+++. ++-+ -..++.+++..|..|++++.+ ++.+.+|.+.
T Consensus 94 NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~ 163 (215)
T PF14761_consen 94 NWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLK 163 (215)
T ss_pred EhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEE
Confidence 222 111111 1112 234667888888888877543 4588898876
No 439
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.32 E-value=9.8 Score=38.21 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=71.6
Q ss_pred cEEEEEEeC--CCCEEEEEecCCeEEEEECCC-------C----e---------eeEEeeccCCCeEEEEEeC-CCCCEE
Q 013436 229 GIFSLKFST--DGRELVAGSSDDCIYVYDLEA-------N----K---------LSLRILAHTSDVNTVCFGD-ESGHLI 285 (443)
Q Consensus 229 ~i~~l~~~~--~~~~l~~~~~dg~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~i~~~~-~~~~~l 285 (443)
.|+-+.... +...|+.+.+||.|.+|.+++ . . +...+ .-...+..++++. ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 455554443 557899999999999997521 0 0 11111 2234677788752 345678
Q ss_pred EEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC-----C-EEEEEeCCCCEEEEeC
Q 013436 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-----R-YLISNGKDQAIKLWDI 345 (443)
Q Consensus 286 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~-~l~s~~~dg~i~iwd~ 345 (443)
|+++....|.||-............ -..+..-|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888887653211111111 11255678888886643 2 7778888999999888
No 440
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.27 E-value=5.4 Score=40.89 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=72.5
Q ss_pred CCEEEEEecCCeEEEEECCCCeeeEEeeccCC--------CeEEEEEeC---------------CCCCEEEEeeCCCeEE
Q 013436 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTS--------DVNTVCFGD---------------ESGHLIYSGSDDNLCK 295 (443)
Q Consensus 239 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~i~~~~---------------~~~~~l~~~~~d~~i~ 295 (443)
+..++.++.++.|+-.|..+++.+-++..... .++.+.+.. .++..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677788889999999999998877653221 122333321 1345788899999999
Q ss_pred EEecccCCCCCceeeeecCCCCCe-------------EEEEECC--CCCEEEEEeC----------CCCEEEEeCCCCCC
Q 013436 296 VWDRRCLNVKGKPAGVLMGHLEGI-------------TFIDSRG--DGRYLISNGK----------DQAIKLWDIRKMSS 350 (443)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~s~~~----------dg~i~iwd~~~~~~ 350 (443)
-.|.+ +++.+..+.. .+.| ..+.-.| .+..+++++. +|.|+-+|.++++.
T Consensus 274 ALDA~----TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDAD----TGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECC----CCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 99998 7777765532 1111 0111122 1334555542 58899999999988
Q ss_pred ccccCC
Q 013436 351 NASCNL 356 (443)
Q Consensus 351 ~~~~~~ 356 (443)
......
T Consensus 349 ~W~~~~ 354 (764)
T TIGR03074 349 VWAWDP 354 (764)
T ss_pred eeEEec
Confidence 877654
No 441
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.17 E-value=1.7 Score=40.88 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=86.4
Q ss_pred CCCeEEE-EECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC-------CEEEEEecCCeE
Q 013436 180 DQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-------RELVAGSSDDCI 251 (443)
Q Consensus 180 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-------~~l~~~~~dg~i 251 (443)
+..+|.. ++....++-.|++.|+.+....... .+ -+.|.|+. ..-++|-.+..|
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~d-----------------dv-vVqy~p~~kf~qmt~eqtlvGlS~~sv 539 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD-----------------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSV 539 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCC-----------------cc-eeecCCchhHHhcCccceEEeecccce
Confidence 4444443 4444567777888777655444322 23 45666632 123344455556
Q ss_pred EEEECCCCe-eeEE--ee--ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC
Q 013436 252 YVYDLEANK-LSLR--IL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (443)
Q Consensus 252 ~iwd~~~~~-~~~~--~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (443)
.-.|.+-.. .+.. .+ .......+..- ....++|+++..|-|++||.- .......+.+....|..+..+.
T Consensus 540 FrIDPR~~gNKi~v~esKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDRi----g~rAKtalP~lG~aIk~idvta 613 (776)
T COG5167 540 FRIDPRARGNKIKVVESKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDRI----GKRAKTALPGLGDAIKHIDVTA 613 (776)
T ss_pred EEecccccCCceeeeeehhcccccccccccc--ccCceEEEecCCCceeeehhh----cchhhhcCcccccceeeeEeec
Confidence 666755332 1111 11 11222333333 334589999999999999975 3344455667788999999999
Q ss_pred CCCEEEEEeCCCCEEEEeCCCC
Q 013436 327 DGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
+|.++++.+. ..+.+-|++-.
T Consensus 614 ~Gk~ilaTCk-~yllL~d~~ik 634 (776)
T COG5167 614 NGKHILATCK-NYLLLTDVPIK 634 (776)
T ss_pred CCcEEEEeec-ceEEEEecccc
Confidence 9998887765 46888887653
No 442
>PLN02193 nitrile-specifier protein
Probab=93.16 E-value=8.7 Score=37.17 Aligned_cols=148 Identities=11% Similarity=0.035 Sum_probs=71.7
Q ss_pred CCCEEEEEECC-------CeEEEEECCCCeEEEEeeec-CCc--cceEEEEEECCCCCeEEEEECC-----CeEEEEECC
Q 013436 135 DGSLFVAGFQA-------SQIRIYDVERGWKIQKDILA-KSL--RWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVG 199 (443)
Q Consensus 135 ~~~~l~~g~~d-------~~i~iwd~~~~~~~~~~~~~-~~~--~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~ 199 (443)
++.+++.|+.+ ..+.+||+.+..-....... ... ......+. -++.+++.|+.+ ..+..||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~--~~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVS--IGSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEE--ECCEEEEECCCCCCCCCccEEEEECC
Confidence 45566666643 24778888876332211000 000 00111122 245666777754 368889988
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEee-----ccC
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRIL-----AHT 269 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~-----~~~ 269 (443)
+.+...+....... .....| +++. -++++++.|+.+ ..+..||+.+.+-...-. ...
T Consensus 253 t~~W~~l~~~~~~P-------~~R~~h-----~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R 319 (470)
T PLN02193 253 TNEWKLLTPVEEGP-------TPRSFH-----SMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIR 319 (470)
T ss_pred CCEEEEcCcCCCCC-------CCccce-----EEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCC
Confidence 87665433221100 001111 1222 256667777654 347788887765322110 001
Q ss_pred CCeEEEEEeCCCCCEEEEeeCC----CeEEEEecc
Q 013436 270 SDVNTVCFGDESGHLIYSGSDD----NLCKVWDRR 300 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d----~~i~iwd~~ 300 (443)
.. ..++. .++++++.++.+ ..+.+||+.
T Consensus 320 ~~-~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~ 351 (470)
T PLN02193 320 GG-AGLEV--VQGKVWVVYGFNGCEVDDVHYYDPV 351 (470)
T ss_pred CC-cEEEE--ECCcEEEEECCCCCccCceEEEECC
Confidence 11 12222 245666777655 458888886
No 443
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.14 E-value=6.7 Score=35.75 Aligned_cols=110 Identities=10% Similarity=0.012 Sum_probs=56.0
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeE---EEEeeecCCccceEEEEEECCCCCeEEEEEC-----CCeEEEEECCCC
Q 013436 135 DGSLFVAGFQA-----SQIRIYDVERGWK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSG 201 (443)
Q Consensus 135 ~~~~l~~g~~d-----~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-----dg~i~iwd~~~~ 201 (443)
++.+++.|+.+ ..+..||+.+... ...............+.. -++++.+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 56677777754 3567778776532 111111111111111222 25666677764 236888898877
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC----eEEEEECCCCee
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANKL 261 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg----~i~iwd~~~~~~ 261 (443)
+........... .....+...++++.+.|+.++ .+.+||..+.+-
T Consensus 150 ~W~~~~~~p~~~---------------r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWFELPDFPGEP---------------RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CeeECCCCCCCC---------------CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 665433221100 011112223577777777653 356899887653
No 444
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.12 E-value=0.76 Score=39.06 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=51.2
Q ss_pred ECCCCCeEEEEECCCeEEEEECCCCceeccc-cceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEE
Q 013436 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (443)
Q Consensus 177 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd 255 (443)
+..++.+|++.+.+|.+++||+.+++..... .+...-.... .........|..+.++.+|.-+++-+ +|..+.||
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~---~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP---VSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc---cccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 4457888999999999999999998764332 1111110000 00002344788888888888766654 57789998
Q ss_pred CCCCe
Q 013436 256 LEANK 260 (443)
Q Consensus 256 ~~~~~ 260 (443)
..-+.
T Consensus 94 ~~L~~ 98 (219)
T PF07569_consen 94 PDLGC 98 (219)
T ss_pred cccce
Confidence 65443
No 445
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.80 E-value=0.73 Score=42.48 Aligned_cols=164 Identities=12% Similarity=0.130 Sum_probs=95.4
Q ss_pred cceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEE-EEEEeCCCCEEEEEec
Q 013436 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGSS 247 (443)
Q Consensus 169 ~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~ 247 (443)
-..|..+-..||++.|..-+. .++.++++.+.......-...... .....|+ .+..-..|.-+++++.
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg----------~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG----------DSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCC----------chHHHHHHHHHHHhCceeEEEEcC
Confidence 345777889999998877655 678899887665432211111010 0000122 1222234566888899
Q ss_pred CCeEEEE-ECCCCe-e----eEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEE
Q 013436 248 DDCIYVY-DLEANK-L----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321 (443)
Q Consensus 248 dg~i~iw-d~~~~~-~----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 321 (443)
||.|.-| |++.+. + ++.++-....+..+.- ..+.+-+++-+.+|++.++... ..+.+ .+..--..+.-
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~p-e~~rkgF~~l~~~G~L~~f~st----~~~~l-L~~~~~~~~~~ 362 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLP-ETNRKGFYSLYRNGTLQSFYST----SEKLL-LFERAYQAPQL 362 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeecc-ccccceEEEEcCCCceeeeecc----cCcce-ehhhhhcCcce
Confidence 9998877 554432 1 1111112233333332 2445567778888888887754 22222 22223346677
Q ss_pred EEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
+++||.+.+|++-. .|.++++.+.+..+
T Consensus 363 ~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 363 VAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eeeCcccchheeec-CCceEEEEecCCCC
Confidence 89999999988764 57799999988544
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.54 E-value=3.1 Score=39.34 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=53.7
Q ss_pred ccceEEEEEECCCCCeEEEEECCCeEEEEEC---------CCCceeccccceecccCceeeccCCCCceecEEEEEEeCC
Q 013436 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDV---------GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238 (443)
Q Consensus 168 ~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 238 (443)
..-.|..+..++.|..++.++.+|.+.++=. +.++.....+...... .+.. ....-.+..++|+|+
T Consensus 102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~--~~ft---ss~~ltl~Qa~WHP~ 176 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE--RFFT---SSTSLTLKQAAWHPS 176 (741)
T ss_pred ceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc--eeec---cCCceeeeeccccCC
Confidence 3446888999999999999999996655431 1221111111111000 0000 012236778899996
Q ss_pred C---CEEEEEecCCeEEEEECCCCe
Q 013436 239 G---RELVAGSSDDCIYVYDLEANK 260 (443)
Q Consensus 239 ~---~~l~~~~~dg~i~iwd~~~~~ 260 (443)
. ..|+.-+.|..|++||+....
T Consensus 177 S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 177 SILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred ccCCceEEEEecCcEEEEEecCCcc
Confidence 5 567888889999999987654
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.49 E-value=1.2 Score=37.91 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=52.2
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeEEEEeee----cC-------CccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDIL----AK-------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 132 ~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~----~~-------~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
+..++.+|++-+.+|.+++||+.+++.+..... .. .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 445788899999999999999999865543311 11 2445688899998887766654 57889998776
Q ss_pred Cceec
Q 013436 201 GTMES 205 (443)
Q Consensus 201 ~~~~~ 205 (443)
+....
T Consensus 97 ~~W~~ 101 (219)
T PF07569_consen 97 GCWIR 101 (219)
T ss_pred ceeEE
Confidence 55443
No 448
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=92.48 E-value=7.8 Score=34.90 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=55.5
Q ss_pred CCCeEEEEECCCeEEEEECCC--CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEEC
Q 013436 180 DQRHLVYASMSPIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDL 256 (443)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~ 256 (443)
++++|+.|+.+| +.+.++.. .+...... ...|.++...+.-+.|++-+. ...++.+++
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~------------------~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L 72 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLIG------------------RRSVTQIWVLEENNVLLMISGKKPQLYSHPL 72 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEecC------------------cCceEEEEEEhhhCEEEEEeCCcceEEEEEH
Confidence 336899999999 45555554 22222221 227889999987776666543 344999998
Q ss_pred CCCee---------------eEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEec
Q 013436 257 EANKL---------------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299 (443)
Q Consensus 257 ~~~~~---------------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~ 299 (443)
..-.. ......+.......++.......++++....+|.++..
T Consensus 73 ~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~ 130 (302)
T smart00036 73 SALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQW 130 (302)
T ss_pred HHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEc
Confidence 32221 01112344444444443222234455555667777654
No 449
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.33 E-value=1.1 Score=36.55 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=25.6
Q ss_pred CCeEEEEECCCC------CEEEEEeCCCCEEEEeCCC
Q 013436 317 EGITFIDSRGDG------RYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 317 ~~v~~~~~~~~~------~~l~s~~~dg~i~iwd~~~ 347 (443)
..+..++|||.| -+|++.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 3688889999999998664
No 450
>PLN02153 epithiospecifier protein
Probab=92.26 E-value=9.2 Score=35.17 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=36.6
Q ss_pred CCCEEEEEECC-------CeEEEEECCCCeEEEEeeecCC-cc---ceEEEEEECCCCCeEEEEECC-----CeEEEEEC
Q 013436 135 DGSLFVAGFQA-------SQIRIYDVERGWKIQKDILAKS-LR---WTVTDTSLSPDQRHLVYASMS-----PIVHIVDV 198 (443)
Q Consensus 135 ~~~~l~~g~~d-------~~i~iwd~~~~~~~~~~~~~~~-~~---~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~ 198 (443)
++++++.|+.+ ..+.+||+.+..-.. ...... .. .....+.+ ++++++.|+.+ ..+.+||+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSI-APANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEE-cCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666666653 357888988763222 111110 01 01222233 46677777754 25788898
Q ss_pred CCCceecc
Q 013436 199 GSGTMESL 206 (443)
Q Consensus 199 ~~~~~~~~ 206 (443)
.+.+....
T Consensus 109 ~t~~W~~~ 116 (341)
T PLN02153 109 VKNEWTFL 116 (341)
T ss_pred CCCEEEEe
Confidence 87765443
No 451
>PLN02193 nitrile-specifier protein
Probab=92.05 E-value=12 Score=36.16 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=73.9
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeEEEEeeec---CCccceEEEEEECCCCCeEEEEECCC-----eEEEEECCCC
Q 013436 135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILA---KSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSG 201 (443)
Q Consensus 135 ~~~~l~~g~~d-----~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~i~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 201 (443)
++++++.|+.+ +.+.+||+.+..... .... ...+... +++. -++++++.|+.++ .+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P~~R~~h-~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKL-LTPVEEGPTPRSFH-SMAA-DEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEE-cCcCCCCCCCccce-EEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 56667777654 358888988763322 1111 1111111 1221 2566677776543 4678888877
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC----CeEEEEECCCCeeeEEeec---c-CCCeE
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILA---H-TSDVN 273 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~---~-~~~v~ 273 (443)
+........... ....+| .++. -+++.++.++.+ ..|.+||+.+.+-...-.. . .....
T Consensus 305 ~W~~~~~~~~~~-------~~R~~~-----~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 305 KWFHCSTPGDSF-------SIRGGA-----GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred EEEeCCCCCCCC-------CCCCCc-----EEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence 654332211000 000111 1122 256777777655 4589999988764332111 1 11112
Q ss_pred EEEEeCCCCCEEEEeeCC--------------CeEEEEecc
Q 013436 274 TVCFGDESGHLIYSGSDD--------------NLCKVWDRR 300 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d--------------~~i~iwd~~ 300 (443)
+++. .++++++.|+.+ ..+.+||+.
T Consensus 372 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 372 ASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEE--ECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 2222 356677777753 247778876
No 452
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.01 E-value=4.4 Score=30.95 Aligned_cols=118 Identities=13% Similarity=0.165 Sum_probs=68.2
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeEEE----EeeecCCccceEEEEEECC-----CCCeEEEEECCCeEEEEEC
Q 013436 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ----KDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~v~~i~~s~-----~~~~l~~~~~dg~i~iwd~ 198 (443)
..-.|......|++++..|.|.|++........ .....-.....|++++-.+ +...|+.|+. ..+..||+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 345677777789999999999999876431111 0001112223477765433 2445666555 56889999
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeC----CCCEEEEEecCCeEEEEECCCCeeeEE
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSSDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~ 264 (443)
..+.-.......+ .|.++.+-. +..++++| .+..|.-||.+..+...+
T Consensus 81 ~~N~d~Fyke~~D-----------------Gvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 81 ENNSDLFYKEVPD-----------------GVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ccCchhhhhhCcc-----------------ceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 8876544433332 566666632 23444444 466788888765554433
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=14 Score=36.94 Aligned_cols=111 Identities=11% Similarity=0.132 Sum_probs=65.0
Q ss_pred ecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec-cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCC
Q 013436 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (443)
Q Consensus 228 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 306 (443)
..+..+..||+.++|+--...|.|.+-+....++...+.. ...+...++|. .+. -++.+.+..+.+... .+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc-gnd--aVvl~~e~~l~lvgp-----~g 288 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC-GND--AVVLSWEVNLMLVGP-----PG 288 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceee-cCC--ceEEEEeeeEEEEcC-----CC
Confidence 4577788999999999999999999998887776666552 22233467776 222 222333334444433 45
Q ss_pred ceeeeecCCCCCeEEEEECCCCCEEEEEeC--------CCCEEEEeCCCCC
Q 013436 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGK--------DQAIKLWDIRKMS 349 (443)
Q Consensus 307 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--------dg~i~iwd~~~~~ 349 (443)
..+.-+..+.. + +.--+||-.+++.+. ..+..|+.+.+.+
T Consensus 289 d~V~f~yd~t~-~--l~~E~DGVRI~t~t~~EFl~rvp~~~enIF~igS~e 336 (829)
T KOG2280|consen 289 DSVQFYYDETA-I--LSAEVDGVRIITSTSHEFLQRVPAETENIFKIGSTE 336 (829)
T ss_pred CccccccCCCc-e--eeeccCeeEEeccchHHHHHhCChhhhhHhhcCCCC
Confidence 55555544433 2 444556766666543 2344555555544
No 454
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.94 E-value=11 Score=35.39 Aligned_cols=154 Identities=13% Similarity=0.154 Sum_probs=82.8
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCC-eEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
+....+..++||.+++.|.....++-||-... +... .......++.+.|.+++..++++ ..|.+. +....+..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~----~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~ 312 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPH----NRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLT 312 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEe----cCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCc
Confidence 34566778899998888865443444543221 1111 12233458999999998876654 666553 33344432
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee---ccCCCeEEEEEeCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGDE 280 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~ 280 (443)
.....+.... .......+.++.|.+++..+++| ..|.+.... ..++.-.... .-....+.+.|. +
T Consensus 313 ~~~~~f~~~~---------~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~-~ 380 (398)
T PLN00033 313 EEDFDFEEAD---------IKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFF-D 380 (398)
T ss_pred ccccceeecc---------cCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEc-C
Confidence 1110111000 00011258889999888755555 677665553 4444322222 234568899985 4
Q ss_pred CCCEEEEeeCCCeEEEE
Q 013436 281 SGHLIYSGSDDNLCKVW 297 (443)
Q Consensus 281 ~~~~l~~~~~d~~i~iw 297 (443)
+++.+ ..+.+|.|.-|
T Consensus 381 ~~~g~-~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGF-VLGNDGVLLRY 396 (398)
T ss_pred CCceE-EEeCCcEEEEe
Confidence 45544 45567776554
No 455
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.73 E-value=0.28 Score=48.93 Aligned_cols=213 Identities=15% Similarity=0.142 Sum_probs=109.1
Q ss_pred cccCCCCceEEEEECCCC-CEEEEEECCCeEEEEECCC--CeEEEEee--ecCCccceEEEEEECC---CCCeEEEEECC
Q 013436 119 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVER--GWKIQKDI--LAKSLRWTVTDTSLSP---DQRHLVYASMS 190 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~--~~~~~~~~--~~~~~~~~v~~i~~s~---~~~~l~~~~~d 190 (443)
.+.++.+.|-.++|.... ..++ -.-|.+.||+++- |+...... ....-...+.-+.|.| +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 457788888888886432 1222 2336688998753 32211111 1111122345566665 55667777788
Q ss_pred CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC-----CCeeeEEe
Q 013436 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-----ANKLSLRI 265 (443)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~ 265 (443)
+.|++.++++.....+...........+... +-+.--..+|||+.|+++..||.+..|-+. ...++...
T Consensus 205 ~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~------g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhew 278 (1283)
T KOG1916|consen 205 GEIRLLNINRALRSLFRSHSQRVTDMAFFAE------GVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEW 278 (1283)
T ss_pred CceeEeeechHHHHHHHhcCCCcccHHHHhh------chhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhcc
Confidence 8999888776543111111111000000000 011112379999999999999998877643 33455556
Q ss_pred eccCC-CeEEEEEeCCCC---------CEEEEee-CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCE----
Q 013436 266 LAHTS-DVNTVCFGDESG---------HLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY---- 330 (443)
Q Consensus 266 ~~~~~-~v~~i~~~~~~~---------~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---- 330 (443)
+.|.+ +-.|.-+. ... .++++++ .+..+++|... ..+|+ +.-....|..+. -+++..
T Consensus 279 kphd~~p~vC~lc~-~~~~~~v~i~~w~~~Itttd~nre~k~w~~a----~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~ 350 (1283)
T KOG1916|consen 279 KPHDKHPRVCWLCH-KQEILVVSIGKWVLRITTTDVNREEKFWAEA----PWQCL--LDKLIDGVQIVG-PHDGEVTDLS 350 (1283)
T ss_pred CCCCCCCceeeeec-cccccCCccceeEEEEecccCCcceeEeecc----chhhh--hhhcccceEeec-CCCccccchh
Confidence 66653 22222232 211 1233333 44578888876 44544 111223344444 233321
Q ss_pred --------EEEEeCCCCEEEEeCCC
Q 013436 331 --------LISNGKDQAIKLWDIRK 347 (443)
Q Consensus 331 --------l~s~~~dg~i~iwd~~~ 347 (443)
+++.+-++.|++|.-+.
T Consensus 351 ~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 351 MCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred hhHHHHHHHHHhhhHHHHHHhhcch
Confidence 34455688888886554
No 456
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.63 E-value=0.021 Score=52.49 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=99.4
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE-EEECCCeEEEEECCCCcee
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~ 204 (443)
......|-|.+.-++.++.+..+..||-... ... ....++...+++|..++..++ .+-..+.+.+||+.+....
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~l----e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VIL----ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcc-eec----ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 3445577887777888888888999986542 222 122334567788888877655 4567789999999875432
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCE
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 284 (443)
...... .|.... +.|++.+..++.+...|.+.|++..+.+....+-.|...++++++. ..+ +
T Consensus 111 qLE~gg--------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~-lEd-~ 172 (615)
T KOG2247|consen 111 QLESGG--------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT-LED-Y 172 (615)
T ss_pred HHhccC--------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec-ccc-e
Confidence 221111 111122 7899988889999999999999988877666665589999999996 433 4
Q ss_pred EEEeeCCCeEE
Q 013436 285 IYSGSDDNLCK 295 (443)
Q Consensus 285 l~~~~~d~~i~ 295 (443)
.+.++.|..+.
T Consensus 173 vil~dcd~~L~ 183 (615)
T KOG2247|consen 173 VILCDCDNTLS 183 (615)
T ss_pred eeecCcHHHHH
Confidence 55555554443
No 457
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.23 E-value=10 Score=33.60 Aligned_cols=93 Identities=19% Similarity=0.330 Sum_probs=59.6
Q ss_pred CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe------cCCeEEEEECCCCeeeEE
Q 013436 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~ 264 (443)
..|++||..+.+...... +-.+.|.++.|..+.+.++.|. ....+..||+.+.... .
T Consensus 16 ~~lC~yd~~~~qW~~~g~----------------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~ 78 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN----------------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-S 78 (281)
T ss_pred CEEEEEECCCCEeecCCC----------------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-e
Confidence 469999998887654433 2334899999997777666664 3456889998877532 2
Q ss_pred eec-----cCCCeEEEEEeCCCCC-EEEEee-CC--CeEEEEecc
Q 013436 265 ILA-----HTSDVNTVCFGDESGH-LIYSGS-DD--NLCKVWDRR 300 (443)
Q Consensus 265 ~~~-----~~~~v~~i~~~~~~~~-~l~~~~-~d--~~i~iwd~~ 300 (443)
+.. -.++|..+.+...+.. +.+.|. .+ ..|..||-.
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 322 2478888888645554 443443 23 356777654
No 458
>PLN02153 epithiospecifier protein
Probab=90.93 E-value=13 Score=34.22 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=16.2
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCee
Q 013436 238 DGRELVAGSSD-----DCIYVYDLEANKL 261 (443)
Q Consensus 238 ~~~~l~~~~~d-----g~i~iwd~~~~~~ 261 (443)
++++++.|+.+ ..+.+||+.+.+-
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 113 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEW 113 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEE
Confidence 46667777653 3588899887653
No 459
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.79 E-value=0.4 Score=47.91 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=69.7
Q ss_pred ceecEEEEEEeC-CCCEEEEEecCCeEEEEECC--CCeeeEE-----eeccCCCeEEEEEeC--CCCCEEEEeeCCCeEE
Q 013436 226 YSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE--ANKLSLR-----ILAHTSDVNTVCFGD--ESGHLIYSGSDDNLCK 295 (443)
Q Consensus 226 ~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~--~~~~~~~-----~~~~~~~v~~i~~~~--~~~~~l~~~~~d~~i~ 295 (443)
..+.+..++|-. +...+. -.-|.+.|||+. .|+.... .......+.-+.|.| .+.-++..+-.++.|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 334677777753 222222 234668888864 3433222 223344556666664 3445666677788888
Q ss_pred EEecccCCCCCceeeeecCCCCCeEEEE-----------ECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 296 VWDRRCLNVKGKPAGVLMGHLEGITFID-----------SRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+.... . .....+.+|...++.++ ++|||..|+..+.||.+++|.+.-
T Consensus 209 lL~~~----r-a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 209 LLNIN----R-ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred Eeeec----h-HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 77664 1 22244555766655543 589999999999999999887653
No 460
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.64 E-value=9.1 Score=32.02 Aligned_cols=151 Identities=13% Similarity=0.028 Sum_probs=75.9
Q ss_pred CEEEEEECCCeEEEEECCCC--eEEEEeeecCCccceEEEEEECCCCCeEEEEECCC------eEEEE---ECCC--Cce
Q 013436 137 SLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP------IVHIV---DVGS--GTM 203 (443)
Q Consensus 137 ~~l~~g~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg------~i~iw---d~~~--~~~ 203 (443)
+.|+.+...+.|.+|++.+. ....... .-+.|..+.++..|++|++--.+. .+++| +... ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 44444456678999999833 2222222 224699999999999999864322 45654 2221 111
Q ss_pred eccccce----ec---ccC--ceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee-eE-----Eee--
Q 013436 204 ESLANVT----EI---HDG--LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SL-----RIL-- 266 (443)
Q Consensus 204 ~~~~~~~----~~---~~~--~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~-----~~~-- 266 (443)
....... .. ... +..... .-..++.+++..|-...|++|+ ++.+.+|.+..... .. .+.
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiEl---Pl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIEL---PLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEe---cCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhh
Confidence 1110000 00 000 000000 1123567888888444466665 45688998765433 11 111
Q ss_pred ---ccC-CCeEEEEEeCCCCCEEEEeeCCCeEEEEec
Q 013436 267 ---AHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299 (443)
Q Consensus 267 ---~~~-~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~ 299 (443)
-|. -.+..+++. +.++|..+.. .+++..+
T Consensus 181 l~~~~~~~~p~~v~ic---~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAIC---EGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hhheecCceEEEEEEE---eeEEEEecCC-EEEEEEE
Confidence 111 124556665 5577766543 5666544
No 461
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.63 E-value=12 Score=33.24 Aligned_cols=120 Identities=9% Similarity=0.059 Sum_probs=65.0
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCce-----eccccceecccCceeeccCCCCceecEEEEEEeCCC-------
Q 013436 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-----ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG------- 239 (443)
Q Consensus 172 v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~------- 239 (443)
-..|+++|.+.+.++....+...+||...... .....+... .........+.+.|+...
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~---------~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP---------PPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC---------CCCCCCCCccEEEEeCCCceEEcCC
Confidence 56799999998888877888999999872211 001111100 000011234455555322
Q ss_pred -----CEEEEEecCCeEEEEECCCCee-----eEEee-ccCCCe-EEEEEeC-CCCCEEEEe-eCCCeEEEEecc
Q 013436 240 -----RELVAGSSDDCIYVYDLEANKL-----SLRIL-AHTSDV-NTVCFGD-ESGHLIYSG-SDDNLCKVWDRR 300 (443)
Q Consensus 240 -----~~l~~~~~dg~i~iwd~~~~~~-----~~~~~-~~~~~v-~~i~~~~-~~~~~l~~~-~~d~~i~iwd~~ 300 (443)
..++.+++||+|.-|...-+.. ...+. .....| ..+++.. ..+++|+.+ -..++|.+||-.
T Consensus 96 g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 96 GITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred CcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 2367888999999998533221 12222 112333 3344431 234555544 467899999864
No 462
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.47 E-value=3.8 Score=43.35 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=27.8
Q ss_pred ceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 170 ~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
.....++|+|...++|.+...|.|+++-...-+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEE
Confidence 3466789999999999999999999997654433
No 463
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.26 E-value=15 Score=33.86 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=27.8
Q ss_pred CCCCEEEEEECC-----------CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC
Q 013436 134 ADGSLFVAGFQA-----------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (443)
Q Consensus 134 ~~~~~l~~g~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d 190 (443)
-++++.+.|+.+ ..+..||..++.-................+ ..-+++..+.|+.+
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~-~~~~g~IYviGG~~ 128 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGF-SLHNGQAYFTGGVN 128 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEE-EEeCCEEEEEcCcC
Confidence 367777777753 247788887763322111111111111111 12467777887764
No 464
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.19 E-value=0.04 Score=50.78 Aligned_cols=136 Identities=14% Similarity=0.176 Sum_probs=90.1
Q ss_pred EEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEE-EEecCCeE
Q 013436 173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCI 251 (443)
Q Consensus 173 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~dg~i 251 (443)
....|-|.+.-++.++.+..+..||-....... .. .......++|..++..++ .+-..+.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le-~n-----------------~tg~aldm~wDkegdvlavlAek~~pi 99 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILE-LN-----------------PTGKALDMAWDKEGDVLAVLAEKTGPI 99 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceecc-cC-----------------CchhHhhhhhccccchhhhhhhcCCCe
Confidence 345678887779998888888888855433221 11 112456678887776544 45567889
Q ss_pred EEEECCCCeeeEEee-ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCE
Q 013436 252 YVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (443)
Q Consensus 252 ~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 330 (443)
++||+.+... ..+. +....-.-+.|+ +....++.+...|.+.|++.. ..+.+...-.|...+++++|.+.+..
T Consensus 100 ylwd~n~eyt-qqLE~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhg----tsR~iiv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 100 YLWDVNSEYT-QQLESGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHG----TSRRIIVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred eechhhhhhH-HHHhccCcchHHHHhhc-cCCccccccccccceEEEecc----chhhhhhhcccccceeEEEeccccee
Confidence 9999976532 1222 111111226776 777788888899999999987 55555444448899999999987754
Q ss_pred EE
Q 013436 331 LI 332 (443)
Q Consensus 331 l~ 332 (443)
+.
T Consensus 174 il 175 (615)
T KOG2247|consen 174 IL 175 (615)
T ss_pred ee
Confidence 43
No 465
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.12 E-value=12 Score=35.71 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=37.7
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEee---e-cCCccceEEEEEECCCC
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI---L-AKSLRWTVTDTSLSPDQ 181 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~---~-~~~~~~~v~~i~~s~~~ 181 (443)
...+.|+|.|||++|++--..|.|++++..++....... . ..........|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 457889999999888777546999999866543211110 0 11124558999999874
No 466
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.02 E-value=26 Score=36.35 Aligned_cols=174 Identities=11% Similarity=0.021 Sum_probs=100.3
Q ss_pred CCCCceEEEEEC---C----CCCEEEEEECCCeEEEEECCCC---------------eEEEEeeecCCccceEEEEEECC
Q 013436 122 QTTSRAYVSQFS---A----DGSLFVAGFQASQIRIYDVERG---------------WKIQKDILAKSLRWTVTDTSLSP 179 (443)
Q Consensus 122 ~h~~~v~~~~~s---~----~~~~l~~g~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~~~v~~i~~s~ 179 (443)
....+|..++|+ . ..++|++= ....+.|+...-. ..+..+....-...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 457889999999 2 22466655 4456777772111 11111111112234678899998
Q ss_pred C-CCeEEEEECCCeEEEEECCCCceec--cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEEC
Q 013436 180 D-QRHLVYASMSPIVHIVDVGSGTMES--LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (443)
Q Consensus 180 ~-~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 256 (443)
. .+.||+....|...||++....... .........+.. ..+......-..+.|.++...|++++.. .+.++|+
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi---~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~ 231 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI---IFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDF 231 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc---cCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEEC
Confidence 4 5689999999999999993222111 111111111111 0011111345578898888888888654 5899999
Q ss_pred CCCeeeE--EeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEeccc
Q 013436 257 EANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301 (443)
Q Consensus 257 ~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~ 301 (443)
++..... ........|..+.-++.+..+++.-+ ...|...|+..
T Consensus 232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 232 ESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 8876532 22234567888888755444444433 35777778763
No 467
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.93 E-value=15 Score=33.44 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=33.4
Q ss_pred CCCEEEEEec-----CCeEEEEECCCCeeeEE--eeccCCCeEEEEEeCCCCCEEEEeeCCC----eEEEEecc
Q 013436 238 DGRELVAGSS-----DDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRR 300 (443)
Q Consensus 238 ~~~~l~~~~~-----dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~~~~~d~----~i~iwd~~ 300 (443)
+++..+.|+. ...+..||+.+.+-... +.. .......+.. .++++.+.|+.++ .+.+||..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVK-LQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEE-ECCEEEEEcCCCCccccceEEEecC
Confidence 5666677664 24688999887653221 211 1112222222 4566777777654 34678876
No 468
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.61 E-value=6 Score=41.90 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=30.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 314 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.+..+|..++.......|.+-+..++|.+||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5677999999998888899999999999999987
No 469
>PRK13684 Ycf48-like protein; Provisional
Probab=89.46 E-value=17 Score=33.34 Aligned_cols=151 Identities=13% Similarity=0.054 Sum_probs=80.6
Q ss_pred cceEEEEEECCCCCeEEEEECCCeEEE-EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec
Q 013436 169 RWTVTDTSLSPDQRHLVYASMSPIVHI-VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (443)
Q Consensus 169 ~~~v~~i~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 247 (443)
...+.++.+.|++.++++ +..|.+.. ++-.......... +....+.++.+.++++.++++ .
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~----------------~~~~~l~~i~~~~~g~~~~vg-~ 233 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQR----------------NSSRRLQSMGFQPDGNLWMLA-R 233 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcCCCCCeEEEeeC----------------CCcccceeeeEcCCCCEEEEe-c
Confidence 346889999998866555 44564432 2211111111111 112278899999999877665 5
Q ss_pred CCeEEEEECCCCeeeEEeec----cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee---cCCCCCeE
Q 013436 248 DDCIYVYDLEANKLSLRILA----HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---MGHLEGIT 320 (443)
Q Consensus 248 dg~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~v~ 320 (443)
.|.+++=....+..-..... ....+.++.+. +++..++ ++.+|.+.. ... .++.-... ..-....+
T Consensus 234 ~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~-~~~~~~~-~G~~G~v~~-S~d----~G~tW~~~~~~~~~~~~~~ 306 (334)
T PRK13684 234 GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYR-TPGEIWA-GGGNGTLLV-SKD----GGKTWEKDPVGEEVPSNFY 306 (334)
T ss_pred CCEEEEccCCCCCccccccCCccccccceeeEEEc-CCCCEEE-EcCCCeEEE-eCC----CCCCCeECCcCCCCCcceE
Confidence 67665323334332221111 12357788887 5555554 556675543 222 22222222 22234577
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 321 FIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
.+.|..+++.+++ +..|.|--|+-
T Consensus 307 ~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 307 KIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred EEEEeCCCceEEE-CCCceEEEecC
Confidence 7887766666554 46788777653
No 470
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.39 E-value=6.4 Score=33.91 Aligned_cols=126 Identities=18% Similarity=0.176 Sum_probs=66.2
Q ss_pred EECCCCCEEEEEEC-C--CeEEEEECCC----CeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC-eEEEEECCCC-
Q 013436 131 QFSADGSLFVAGFQ-A--SQIRIYDVER----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSG- 201 (443)
Q Consensus 131 ~~s~~~~~l~~g~~-d--~~i~iwd~~~----~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-~i~iwd~~~~- 201 (443)
.+-+||++|.+|+. + ..+++++..+ .............++..+ ...-|||+.|+.|+... ...+|.-...
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT-~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT-ATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc-ceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 57789999999876 2 3588888654 111111111233333333 33457999999988774 2333332111
Q ss_pred -ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeecc
Q 013436 202 -TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (443)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 268 (443)
......-....... .... ----+...|+|+.|+.+..+. .|||..+++.+..+..-
T Consensus 152 ~~~~~~~~l~~~~~~-------~~~n--lYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 152 PGPVTLPFLSQTSDT-------LPNN--LYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPDL 208 (243)
T ss_pred CCceeeecchhhhcc-------Cccc--cCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCC
Confidence 01000000000000 0000 112356678999998887654 56788888776776543
No 471
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.77 E-value=12 Score=35.68 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=50.5
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCC-----CCCcee---ee-------ec-CCCCCeEEEEECCCC---CEE
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-----VKGKPA---GV-------LM-GHLEGITFIDSRGDG---RYL 331 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~---~~-------~~-~~~~~v~~~~~~~~~---~~l 331 (443)
.|..+..+ +.|..++..+.+|.+..+=.+... ..+++. ++ +. ...-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s-~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLS-PTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEec-CCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 35666776 778888888888876654422111 122111 11 11 112245678899975 577
Q ss_pred EEEeCCCCEEEEeCCCCCCcc
Q 013436 332 ISNGKDQAIKLWDIRKMSSNA 352 (443)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~~~ 352 (443)
+.-+.|+.|++||+...+-+.
T Consensus 184 ~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEEecCcEEEEEecCCcchhh
Confidence 888889999999998866543
No 472
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.73 E-value=2.7 Score=41.56 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=45.2
Q ss_pred CCCCEEEEEECCCeEEEEECCC----CeEEEEeeecC-------------------CccceEEEEEECC----CCCeEEE
Q 013436 134 ADGSLFVAGFQASQIRIYDVER----GWKIQKDILAK-------------------SLRWTVTDTSLSP----DQRHLVY 186 (443)
Q Consensus 134 ~~~~~l~~g~~d~~i~iwd~~~----~~~~~~~~~~~-------------------~~~~~v~~i~~s~----~~~~l~~ 186 (443)
++...++.+..||.+....... +.......... .....+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4677888888999988887764 21221111110 1123456666766 6789999
Q ss_pred EECCCeEEEEECCCCceeccc
Q 013436 187 ASMSPIVHIVDVGSGTMESLA 207 (443)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~ 207 (443)
.+.|+.+++||+.++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999885443
No 473
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.73 E-value=3.2 Score=24.07 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCCCEEEEEe-cCCeEEEEECCCCeeeEEeec
Q 013436 237 TDGRELVAGS-SDDCIYVYDLEANKLSLRILA 267 (443)
Q Consensus 237 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 267 (443)
|+++.|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666655 478999999998888777764
No 474
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.67 E-value=14 Score=31.34 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=65.4
Q ss_pred cEEEEEEeCCCCEEEEEec----------CCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCC-EEEEeeCCCeEEEE
Q 013436 229 GIFSLKFSTDGRELVAGSS----------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH-LIYSGSDDNLCKVW 297 (443)
Q Consensus 229 ~i~~l~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~~~~~d~~i~iw 297 (443)
...+-..+|+|++ +.|.. .|.++.|-... .+..+...-.--+.++|. .+.+ +.++-+.+-.|.-|
T Consensus 110 R~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd-~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 110 RLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWD-SDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred ccccCccCCCCce-eeeeeccccccccccccEEEEeccCC--CceeeehhccCCcccccc-ccCcEEEEEccCceEEeee
Confidence 5556677899997 44432 14455554321 122232333445778896 5544 44555677788778
Q ss_pred ecccC--CC-CCceeeeecC----CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 298 DRRCL--NV-KGKPAGVLMG----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 298 d~~~~--~~-~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
|.... .. +.+.+..+.. ....--.++...+|.+.+++-..++|...|..+++
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc
Confidence 84421 11 1222222221 11112334556688888888888999999999843
No 475
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.42 E-value=14 Score=33.85 Aligned_cols=107 Identities=19% Similarity=0.149 Sum_probs=55.2
Q ss_pred cEEEEEEeCCCCEEEEEecCCeEEEEECCCCee---eEEee----ccCCCeEEEEEeCC--CCCEEEEeeC-C-------
Q 013436 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRIL----AHTSDVNTVCFGDE--SGHLIYSGSD-D------- 291 (443)
Q Consensus 229 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~----~~~~~v~~i~~~~~--~~~~l~~~~~-d------- 291 (443)
.-+.|+|.|||++++ +...|.|++++ ..+.. +..+. ........++++|. ...+|+.... .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 356899999998655 46699999999 44432 22221 23456789999852 2334433332 1
Q ss_pred -CeEEEEecccCCCC---Cc-eeeeecC---CCCCeEEEEECCCCCEEEEEeCC
Q 013436 292 -NLCKVWDRRCLNVK---GK-PAGVLMG---HLEGITFIDSRGDGRYLISNGKD 337 (443)
Q Consensus 292 -~~i~iwd~~~~~~~---~~-~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d 337 (443)
..|.-|........ .+ .+..+.. .......|.|.|||.++++.+..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 13433443311000 11 1112122 23345679999999877766643
No 476
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.18 E-value=18 Score=32.07 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=68.3
Q ss_pred CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE------CCCeEEEEECCCCceeccccceecccCceee
Q 013436 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS------MSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 219 (443)
..|++||..+.+... ...+..+.|+++.|..+.++++.|. ....+..||+.+...........
T Consensus 16 ~~lC~yd~~~~qW~~---~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s-------- 84 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS---PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS-------- 84 (281)
T ss_pred CEEEEEECCCCEeec---CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc--------
Confidence 459999998764332 2344677899999987777777664 34478889988876543332110
Q ss_pred ccCCCCceecEEEEEEeC-CCC-EEEEEe-c--CCeEEEEECCCCeeeEE-eeccCCCeEEEEEe
Q 013436 220 AADDGGYSFGIFSLKFST-DGR-ELVAGS-S--DDCIYVYDLEANKLSLR-ILAHTSDVNTVCFG 278 (443)
Q Consensus 220 ~~~~~~~~~~i~~l~~~~-~~~-~l~~~~-~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~ 278 (443)
..-.++|..+.+.. |+. ..+.|. . +..|..||=.+...+.. .......|..+.+-
T Consensus 85 ----~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 85 ----NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred ----ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 00122677777743 333 343433 2 33477777555444433 22334566666654
No 477
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.07 E-value=3.3 Score=23.70 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=20.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEe-CC--CCEEEE
Q 013436 312 LMGHLEGITFIDSRGDGRYLISNG-KD--QAIKLW 343 (443)
Q Consensus 312 ~~~~~~~v~~~~~~~~~~~l~s~~-~d--g~i~iw 343 (443)
+......-....|+|||+.|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334455677889999999887544 45 666665
No 478
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.41 E-value=19 Score=31.42 Aligned_cols=202 Identities=14% Similarity=0.058 Sum_probs=119.4
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
.+.-+.++-+|||..-+++...+.|--.|-.+|+...-.+ +.......|..-||+..-++-+.. -|.-.|-++.+.
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL---g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL---GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEec---CCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence 4556788889999888888887888888888885443322 222235567778888766654333 455556555544
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec-cCCCeEEEEEeCCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESG 282 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~ 282 (443)
....-..+ .-........|.+.|.+-+++.. |.---.|..++ .+..+.. ....-+.||.. ++|
T Consensus 137 t~f~lp~~-------------~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~at-pdG 200 (353)
T COG4257 137 TRFPLPLE-------------HADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICAT-PDG 200 (353)
T ss_pred EEeecccc-------------cCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEEC-CCC
Confidence 33221111 12235777889999998888753 21111122111 1222221 23345678886 788
Q ss_pred CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 283 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
..-++.-.+..|-..|.... ..+.+..-.........+-.+|.|+.-++....+.+..+|-.+
T Consensus 201 svwyaslagnaiaridp~~~--~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAG--HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cEEEEeccccceEEcccccC--CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 88877777778877777522 1222222233234455566677888888877777788777665
No 479
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.39 E-value=33 Score=34.26 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC------eEEEEEC-CC---eE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR------HLVYASM-SP---IV 193 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~------~l~~~~~-dg---~i 193 (443)
.+.|-.+.|.++++.+++...+|.|.+||.+.+...........+...+.-=.|-++.. ++++.+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Q ss_pred EEEEC--CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee-----
Q 013436 194 HIVDV--GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL----- 266 (443)
Q Consensus 194 ~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----- 266 (443)
+++.+ .......+........ ......|+-+...|+-- .++.|.+|++..-+...++.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~--------------~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii 273 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENF--------------GLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSII 273 (670)
T ss_pred EEEEeccCCcceEEeehheeccC--------------CcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhh
Q ss_pred ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEec
Q 013436 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~ 299 (443)
.... -..+.+.|+..+.++.+..+ .|++.|+
T Consensus 274 ~~~~-~~~vSl~~~s~nRvLLs~~n-kIyLld~ 304 (670)
T PF10395_consen 274 DKES-DDLVSLKPPSPNRVLLSVNN-KIYLLDL 304 (670)
T ss_pred cccc-ccceEeecCCCCeEEEEcCC-EEEEEee
No 480
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.08 E-value=24 Score=32.24 Aligned_cols=169 Identities=14% Similarity=0.206 Sum_probs=89.7
Q ss_pred eEEEEEECCCCCeEEEEECCCe------EEEEECCCCc--e--eccccceecc--cCceeeccCCCCceecEEEEEEeCC
Q 013436 171 TVTDTSLSPDQRHLVYASMSPI------VHIVDVGSGT--M--ESLANVTEIH--DGLDFSAADDGGYSFGIFSLKFSTD 238 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~~dg~------i~iwd~~~~~--~--~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~ 238 (443)
.+..|.+.+++..+++.+.+|. +..+++.... . .......... .+..+ ........+|++.++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~-----~~~~~D~Egi~~~~~ 95 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPF-----PKNGLDPEGIAVPPD 95 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcC-----CcCCCChhHeEEecC
Confidence 4788889876666777777776 6555554411 0 0000000000 01000 001114557888778
Q ss_pred CCEEEEEecC------CeEEEEECCCCeeeEEee---------------ccCCCeEEEEEeCCCCCEEEEeeC-----CC
Q 013436 239 GRELVAGSSD------DCIYVYDLEANKLSLRIL---------------AHTSDVNTVCFGDESGHLIYSGSD-----DN 292 (443)
Q Consensus 239 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~i~~~~~~~~~l~~~~~-----d~ 292 (443)
+.++++.-.+ ..|+.++.. ++....+. ..+...-+|+++ ++++.|+++.. |+
T Consensus 96 g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~-~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 96 GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVS-PDGRTLFAAMESPLKQDG 173 (326)
T ss_pred CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEEC-CCCCEEEEEECccccCCC
Confidence 8877776666 689899876 55444331 134467889997 77775555532 22
Q ss_pred --e-------EEEEecccCC---CCCceeeeecC-----CCCCeEEEEECCCCCEEEEEe-----CCCCEEEEeCC
Q 013436 293 --L-------CKVWDRRCLN---VKGKPAGVLMG-----HLEGITFIDSRGDGRYLISNG-----KDQAIKLWDIR 346 (443)
Q Consensus 293 --~-------i~iwd~~~~~---~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~-----~dg~i~iwd~~ 346 (443)
. ++++...... ...+....+.. ....|+.+.+-+++++|+.=- ....++|+.+.
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 1 4554443111 01112222222 356788999999998776321 23445555443
No 481
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.39 E-value=30 Score=32.71 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=86.4
Q ss_pred CCCEEEEEECCCeEEEEECCCCe-EEEEeeecCCccceEEEEEECC-----CCCeEEEEECCCeEEEEECCCCcee----
Q 013436 135 DGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDVGSGTME---- 204 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~i~~s~-----~~~~l~~~~~dg~i~iwd~~~~~~~---- 204 (443)
+...|++|+..|.++||+...+. .............+|..++.-+ +...||+ -.-..+.+|.+......
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999986542 1112223334455787777532 2233444 45567778877322111
Q ss_pred ccccceecccCceeeccCCCCce--ecEEEEEEeC----C-CCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 205 SLANVTEIHDGLDFSAADDGGYS--FGIFSLKFST----D-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
....+.... .|. .....++.-| . ...+.+-+.||.+.+|+-+.-.....+.. ---...++|
T Consensus 115 ~~~~L~~~y-----------eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y 182 (418)
T PF14727_consen 115 NQYQLELIY-----------EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCY 182 (418)
T ss_pred cEEEEEEEE-----------EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEE
Confidence 000000000 011 1223333333 2 35788889999999999766544444432 223345677
Q ss_pred eCCCCCEEEEeeCCCeEEEEecc
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~ 300 (443)
+ +..+.|++++.+..+..|...
T Consensus 183 ~-~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 183 C-PRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred e-ecCCEEEEecCceeEEEecHH
Confidence 6 666778888888888888754
No 482
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.18 E-value=4.5 Score=40.06 Aligned_cols=87 Identities=22% Similarity=0.128 Sum_probs=45.5
Q ss_pred CCCCeEEEEECCCeEEEEECCCCc----eeccccceec-----ccCceeec-cCCCCceecEEEEEEeC----CCCEEEE
Q 013436 179 PDQRHLVYASMSPIVHIVDVGSGT----MESLANVTEI-----HDGLDFSA-ADDGGYSFGIFSLKFST----DGRELVA 244 (443)
Q Consensus 179 ~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~i~~l~~~~----~~~~l~~ 244 (443)
++...++++..||.+......... .......... -.++.... .........+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 466788889999988887766411 1111000000 00000000 00111123455556655 6788999
Q ss_pred EecCCeEEEEECCCCeeeEEe
Q 013436 245 GSSDDCIYVYDLEANKLSLRI 265 (443)
Q Consensus 245 ~~~dg~i~iwd~~~~~~~~~~ 265 (443)
.+.|+.+++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
No 483
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.11 E-value=11 Score=30.75 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=24.6
Q ss_pred eeeEEEecCC-ccC-CccEEEEeeCCCeEEEEEccC
Q 013436 396 TLIRCHFSPV-YST-GQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 396 ~~~~~~~~~~-~s~-d~~~l~tg~~dg~v~iwd~~~ 429 (443)
.+..+.|+|. ..+ .+-+|++-+.+|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4556677773 222 356889999999999998663
No 484
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=85.82 E-value=24 Score=31.11 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=95.1
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCe
Q 013436 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~ 250 (443)
-+.++.++ +++...+..+.-++|.|+.+............ .+-..++.. .|++..++..+.-
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--------------~gyaygv~v--sGn~aYVadlddg 149 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--------------DGYAYGVYV--SGNYAYVADLDDG 149 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC--------------CceEEEEEe--cCCEEEEeeccCc
Confidence 35566675 44566667777799999987754333322211 012344444 4888888886666
Q ss_pred EEEEECCCCe---eeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC
Q 013436 251 IYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (443)
Q Consensus 251 i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (443)
+.+.|+.+.+ ...+.......-..++.+ |++.+.+..|+-+.+-|+.... +...+... .....+.++..+++
T Consensus 150 fLivdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~-sPvli~~~-n~g~g~~sv~vsdn 224 (370)
T COG5276 150 FLIVDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPH-SPVLIGSY-NTGPGTYSVSVSDN 224 (370)
T ss_pred EEEEECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCC-CCeEEEEE-ecCCceEEEEecCC
Confidence 8889987653 223333334444566665 7788888899999999997332 22222222 12337888888877
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 328 GRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
.-+++... .-+.+-|....+..
T Consensus 225 r~y~vvy~--egvlivd~s~~ssp 246 (370)
T COG5276 225 RAYLVVYD--EGVLIVDVSGPSSP 246 (370)
T ss_pred eeEEEEcc--cceEEEecCCCCCc
Confidence 66665543 34777777775543
No 485
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=85.76 E-value=31 Score=32.27 Aligned_cols=15 Identities=13% Similarity=0.025 Sum_probs=10.6
Q ss_pred eEEEEECCCCceecc
Q 013436 192 IVHIVDVGSGTMESL 206 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~ 206 (443)
.+.+||..+++....
T Consensus 190 ~v~~YD~~t~~W~~~ 204 (376)
T PRK14131 190 EVLSYDPSTNQWKNA 204 (376)
T ss_pred eEEEEECCCCeeeEC
Confidence 578888887776543
No 486
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.59 E-value=48 Score=34.35 Aligned_cols=204 Identities=10% Similarity=0.070 Sum_probs=0.0
Q ss_pred ECCCC--CeEEEEECCCeEEEEECCCCceecccc---------ceecccCceeeccCCCCceecEEEEEEeCCCCEEEEE
Q 013436 177 LSPDQ--RHLVYASMSPIVHIVDVGSGTMESLAN---------VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (443)
Q Consensus 177 ~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~ 245 (443)
++|-. .-+++....|.+++|=.+......... ..... ...++++..+|..++.+
T Consensus 56 ~HP~~~K~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~i---------------thAsi~~~~~g~~ili~ 120 (753)
T PF11635_consen 56 FHPGPAKSACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLI---------------THASIAPSDNGKSILIA 120 (753)
T ss_pred cCCCCCceEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccce---------------eeceeeecCCCCEEEEE
Q ss_pred ecC---CeEEEEECCCCee--eEEeec-------------------------------cCCCeEEEEEeC------CCCC
Q 013436 246 SSD---DCIYVYDLEANKL--SLRILA-------------------------------HTSDVNTVCFGD------ESGH 283 (443)
Q Consensus 246 ~~d---g~i~iwd~~~~~~--~~~~~~-------------------------------~~~~v~~i~~~~------~~~~ 283 (443)
+.+ +.|++|.+.-.-- ...+.. .-..++.+.|-+ ....
T Consensus 121 t~s~~s~~l~~yrv~I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~ 200 (753)
T PF11635_consen 121 TYSSLSKQLRFYRVQIDWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPE 200 (753)
T ss_pred EccccCCceEEEEEEEeccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCe
Q ss_pred EEEEeeCCC----eEEEEecccCCCCCceeeeecC-------------------------CCCCeEEEEECCCCCEEEEE
Q 013436 284 LIYSGSDDN----LCKVWDRRCLNVKGKPAGVLMG-------------------------HLEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 284 ~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~-------------------------~~~~v~~~~~~~~~~~l~s~ 334 (443)
.+++.+... .|.-|.++ .....++.... ....|.+++...-+.+++..
T Consensus 201 Ili~~~~~~~~~SiI~RweL~---~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~ 277 (753)
T PF11635_consen 201 ILIVYSSPNTPSSIIERWELR---EEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFA 277 (753)
T ss_pred EEEEEEcCCCCCcEEEEEEEE---ccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEE
Q ss_pred eCCCCEEEEeCCCCCCcccc----CCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCc
Q 013436 335 GKDQAIKLWDIRKMSSNASC----NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (443)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 410 (443)
-.||+|.++|-.+++.+... .. ...+..+..-...-..+...-..+|||.+
T Consensus 278 ~~DGsI~~~dr~t~~~~~~~~~~~~~-------------------------~~~v~s~~~~Gf~fp~~~~~~~vafSPt~ 332 (753)
T PF11635_consen 278 FSDGSIEFRDRNTMKELNETRTNGEP-------------------------PNTVTSLFQAGFHFPCIQPPLHVAFSPTM 332 (753)
T ss_pred EcCCeEEEEecCcchhhcccccccCC-------------------------ccccccccccccccccCCCCceEEECccc
Q ss_pred cEEEEeeCCCeEE
Q 013436 411 KYIYTGSHDSCVY 423 (443)
Q Consensus 411 ~~l~tg~~dg~v~ 423 (443)
..++.-..+|.+.
T Consensus 333 c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 333 CSLVQIDEDGKTK 345 (753)
T ss_pred ceEEEEecCCCce
No 487
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.51 E-value=40 Score=35.02 Aligned_cols=73 Identities=7% Similarity=0.015 Sum_probs=42.8
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeEEEEee--------ecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 013436 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 130 ~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 201 (443)
.++..-|+.+..|+.+|.+.+|.+.......... ...-+..+|..+...+.-..+.+ -.|+.|.++++.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPEL 98 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCcc
Confidence 3444568899999999999999987641111000 01112345555555554443333 45666888877665
Q ss_pred ce
Q 013436 202 TM 203 (443)
Q Consensus 202 ~~ 203 (443)
+.
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 54
No 488
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.83 E-value=40 Score=32.75 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=65.8
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC-------------CCeEEEE
Q 013436 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------SPIVHIV 196 (443)
Q Consensus 130 ~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-------------dg~i~iw 196 (443)
+..-++|.+++... ..++.+|+.. +.+............=.++..-|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66778998887655 7788888864 343332222211011234667899998887772 1246666
Q ss_pred ECCCCceeccccceecccCcee-----------eccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECCCCeeeEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDF-----------SAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLR 264 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 264 (443)
| .+|+................ ........-.-+.++.+.+....|+..+. -..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 7 77776655444432211111 00011122235889999994444555555 45899999888887766
Q ss_pred eecc
Q 013436 265 ILAH 268 (443)
Q Consensus 265 ~~~~ 268 (443)
+-.+
T Consensus 309 lg~~ 312 (477)
T PF05935_consen 309 LGPP 312 (477)
T ss_dssp ES-S
T ss_pred eCCC
Confidence 6543
No 489
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.37 E-value=35 Score=31.70 Aligned_cols=152 Identities=11% Similarity=0.133 Sum_probs=85.4
Q ss_pred CCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCE--EEEEecC----CeEE
Q 013436 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGSSD----DCIY 252 (443)
Q Consensus 179 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~--l~~~~~d----g~i~ 252 (443)
|...+++....++-+.+||+.......... ... . .-.-...+.+ +|+. |++++.. ..|+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~-Gr~-N-----------NVDvrygf~l--~g~~vDlavas~R~~g~n~l~ 130 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPV-GRP-N-----------NVDVRYGFPL--NGKTVDLAVASDRSDGRNSLR 130 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-S-S-E-E-----------EEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecC-CCc-c-----------eeeeecceec--CCceEEEEEEecCcCCCCeEE
Confidence 345677778888899999998776543311 100 0 0001222333 3432 4444432 4688
Q ss_pred EEECC--CCeeeEEeec-------cCCCeEEEEEe--CCCCC-EEEEeeCCCeEEEEecccCC---CCCceeeeecCCCC
Q 013436 253 VYDLE--ANKLSLRILA-------HTSDVNTVCFG--DESGH-LIYSGSDDNLCKVWDRRCLN---VKGKPAGVLMGHLE 317 (443)
Q Consensus 253 iwd~~--~~~~~~~~~~-------~~~~v~~i~~~--~~~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~ 317 (443)
+|.+. ++. +..+.. ....++.+|+- +.++. +++....+|.+.-|.+.... ...+.++.|.. ..
T Consensus 131 ~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~s 208 (381)
T PF02333_consen 131 LFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GS 208 (381)
T ss_dssp EEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS
T ss_pred EEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CC
Confidence 88764 343 333221 12346777763 33444 66667889988888875321 23356777764 34
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 318 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.+..+.......+|..+-.+.-|.-|+.+.
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp -EEEEEEETTTTEEEEEETTTEEEEEESSC
T ss_pred cceEEEEecccCCEEEecCccEEEEEecCC
Confidence 788888988888999998887677776654
No 490
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.21 E-value=29 Score=30.64 Aligned_cols=152 Identities=16% Similarity=0.065 Sum_probs=89.0
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccc
Q 013436 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (443)
Q Consensus 130 ~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 209 (443)
-.|.-.|++..++..|.-..+.|+.+.......-......+....++.| |++-..+..|+-+.|.|+...........
T Consensus 132 ygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~ 209 (370)
T COG5276 132 YGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGS 209 (370)
T ss_pred EEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEE
Confidence 3344458888888867778889988764433322233333334455664 56666777889999999876543222221
Q ss_pred eecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec-cCCCeEEE-EEeCCCCCEEEE
Q 013436 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTV-CFGDESGHLIYS 287 (443)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i-~~~~~~~~~l~~ 287 (443)
.. ....+.++..+++-.+++.. ..| +.+-|....+....+-. .+..+.++ .+ +-.+++.+.
T Consensus 210 ~n--------------~g~g~~sv~vsdnr~y~vvy-~eg-vlivd~s~~ssp~~~gsyet~~p~~~s~v-~Vs~~~~Yv 272 (370)
T COG5276 210 YN--------------TGPGTYSVSVSDNRAYLVVY-DEG-VLIVDVSGPSSPTVFGSYETSNPVSISTV-PVSGEYAYV 272 (370)
T ss_pred Ee--------------cCCceEEEEecCCeeEEEEc-ccc-eEEEecCCCCCceEeeccccCCcccccce-ecccceeee
Confidence 11 11157777777666555544 334 77888877664443321 22223333 23 355777777
Q ss_pred eeCCCeEEEEecc
Q 013436 288 GSDDNLCKVWDRR 300 (443)
Q Consensus 288 ~~~d~~i~iwd~~ 300 (443)
...+.-+.+-|+.
T Consensus 273 adga~gl~~idis 285 (370)
T COG5276 273 ADGAKGLPIIDIS 285 (370)
T ss_pred eccccCceeEecc
Confidence 7777777777775
No 491
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.69 E-value=6.4 Score=22.72 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=21.4
Q ss_pred CCCCEEEEEE-CCCeEEEEECCCCeEEEEee
Q 013436 134 ADGSLFVAGF-QASQIRIYDVERGWKIQKDI 163 (443)
Q Consensus 134 ~~~~~l~~g~-~d~~i~iwd~~~~~~~~~~~ 163 (443)
|++++|+++. .++.|.++|..++..+....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5777666655 47889999998876555433
No 492
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.55 E-value=21 Score=30.90 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=46.6
Q ss_pred EEEEECCCCeeeEEee-ccCCCeEEEEEeCCCCCEEEEeeC-C--CeEEEEecccCCCCCceeee--ecCCCCCeEEEEE
Q 013436 251 IYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSD-D--NLCKVWDRRCLNVKGKPAGV--LMGHLEGITFIDS 324 (443)
Q Consensus 251 i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~--~~~~~~~v~~~~~ 324 (443)
-.+||+.+++.. .+. .....+.+-.+. ++|+++.+|+. + ..+++++............. .......-.+...
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L-~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFL-PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCC-CCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 347888887643 232 223333444554 78999998875 2 35788876421101111110 0112233344555
Q ss_pred CCCCCEEEEEeCC
Q 013436 325 RGDGRYLISNGKD 337 (443)
Q Consensus 325 ~~~~~~l~s~~~d 337 (443)
-|||+.|+.|+.+
T Consensus 126 L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 126 LPDGRVLIVGGSN 138 (243)
T ss_pred CCCCCEEEEeCcC
Confidence 6799999998876
No 493
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.03 E-value=40 Score=33.88 Aligned_cols=68 Identities=15% Similarity=0.046 Sum_probs=43.2
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
..-++++.-+|.|+-++.+..||.|++|+....... ++... ..+-..+.|...| |+++..|..+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs-ki~~~---~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS-KICEE---AKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchh-hhhhh---cCCccceeeeccc--eEEEeccchhheee
Confidence 445778888999999999999999999998654221 11111 1123334554444 56666666666664
No 494
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.53 E-value=4.9 Score=22.94 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=19.3
Q ss_pred CCCceEEEEECCCCCEEEEEEC-C--CeEEEE
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQ-A--SQIRIY 151 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~-d--~~i~iw 151 (443)
....-....|||||+.|+-++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456788899999998886654 3 555554
No 495
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=82.52 E-value=14 Score=26.10 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=26.4
Q ss_pred CCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE
Q 013436 144 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (443)
Q Consensus 144 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~ 188 (443)
.+|.+.-||..+++.......+. -.+.|++++|+++++++-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~----fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLY----FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEES----SEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCC----ccCeEEEcCCCCEEEEEe
Confidence 35789999999985432222222 267899999999877753
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=82.51 E-value=50 Score=32.09 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=71.9
Q ss_pred CCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCC
Q 013436 144 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (443)
Q Consensus 144 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (443)
..+...++|.... ..........+... +...++|.+++... ..+..+|+... ......+....
T Consensus 126 ~~~~~~~iD~~G~-Vrw~~~~~~~~~~~---~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~~~---------- 188 (477)
T PF05935_consen 126 SSSYTYLIDNNGD-VRWYLPLDSGSDNS---FKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPGGY---------- 188 (477)
T ss_dssp BEEEEEEEETTS--EEEEE-GGGT--SS---EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTE----------
T ss_pred CCceEEEECCCcc-EEEEEccCccccce---eeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCCcc----------
Confidence 4456777776643 22222122221111 56678888776655 77888888643 33333222210
Q ss_pred CCceecEEEEEEeCCCCEEEEEec-------------CCeEEEEECCCCeeeEEee--ccC-------------------
Q 013436 224 GGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLEANKLSLRIL--AHT------------------- 269 (443)
Q Consensus 224 ~~~~~~i~~l~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~~~~~~--~~~------------------- 269 (443)
..--.++..-|+|++|+.+.. ...|..+| .+|+.+..+. .|-
T Consensus 189 ---~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~ 264 (477)
T PF05935_consen 189 ---YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGS 264 (477)
T ss_dssp ---E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-S
T ss_pred ---cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccC
Confidence 001234667788888887772 12366667 7777665543 110
Q ss_pred ------CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC
Q 013436 270 ------SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 315 (443)
Q Consensus 270 ------~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 315 (443)
--++++.+.+.++.+++++-.-..|...|.+ +++....+-.+
T Consensus 265 ~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~----t~~i~Wilg~~ 312 (477)
T PF05935_consen 265 GGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYR----TGKIKWILGPP 312 (477)
T ss_dssp STTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-T----TS-EEEEES-S
T ss_pred CCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECC----CCcEEEEeCCC
Confidence 1378999985577777766666688888866 66665555443
No 497
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.54 E-value=45 Score=30.97 Aligned_cols=197 Identities=16% Similarity=0.200 Sum_probs=103.8
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceE---EEEEECCCCCe--EEEEE-CC---CeEEEEECCC--Cc
Q 013436 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV---TDTSLSPDQRH--LVYAS-MS---PIVHIVDVGS--GT 202 (443)
Q Consensus 134 ~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v---~~i~~s~~~~~--l~~~~-~d---g~i~iwd~~~--~~ 202 (443)
|..++++....++-+.+||++.. .++... .+.-..| ..+.+ .++. |++++ ++ ..|++|.+.. +.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 45578888888899999999864 444321 1211112 22233 3332 44443 33 4799998763 33
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEE--eC-CCC-EEEEEecCCeEEEEECC---CC----eeeEEeeccCCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--ST-DGR-ELVAGSSDDCIYVYDLE---AN----KLSLRILAHTSD 271 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~-~~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~ 271 (443)
...+..... .+.. ....++.+++ +| +|. ++++...+|.+..|-+. .+ +.++++.. .+.
T Consensus 141 L~~v~~~~~-----p~~~-----~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ 209 (381)
T PF02333_consen 141 LTDVTDPAA-----PIAT-----DLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQ 209 (381)
T ss_dssp EEE-CBTTC------EE------SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-
T ss_pred ceEcCCCCc-----cccc-----ccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCc
Confidence 222111000 0000 0013555665 34 454 56667788988888764 23 34566643 446
Q ss_pred eEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC-CCceeeeecC--CCCCeEEEEEC--CCC-CEEEEEe-CCCCEEEEe
Q 013436 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-KGKPAGVLMG--HLEGITFIDSR--GDG-RYLISNG-KDQAIKLWD 344 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~--~~~~v~~~~~~--~~~-~~l~s~~-~dg~i~iwd 344 (443)
+-.+... .....|+.+-.+.-|.-|+.+.... ....+....+ ....|-.|++- +++ .||++++ .+++..||+
T Consensus 210 ~EGCVVD-De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 210 PEGCVVD-DETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEEEEE-TTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred ceEEEEe-cccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 7778884 6677888999998777777763221 2233333322 34577777763 333 3565555 478899999
Q ss_pred CCC
Q 013436 345 IRK 347 (443)
Q Consensus 345 ~~~ 347 (443)
.+.
T Consensus 289 r~~ 291 (381)
T PF02333_consen 289 REG 291 (381)
T ss_dssp SST
T ss_pred cCC
Confidence 876
No 498
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=81.23 E-value=2.2 Score=23.26 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.3
Q ss_pred cEEEEeeCCCeEEEEEccChhhhh
Q 013436 411 KYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 411 ~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
..++.++.+|.++.+|..+|+.+-
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEE
Confidence 358888899999999999998753
No 499
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.22 E-value=57 Score=31.28 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=36.4
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC
Q 013436 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (443)
Q Consensus 172 v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 239 (443)
...|+|.||+++|++--..|.|++++..++.......+..... .........|+++|+-
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~---------~~ge~GLlglal~PdF 90 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN---------DAQHNGLLGLALHPDF 90 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec---------cCCCCceeeEEECCCc
Confidence 6789999999877665446999999866554322221111100 0013378899999874
No 500
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=80.17 E-value=39 Score=30.32 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=50.6
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-----------
Q 013436 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----------- 248 (443)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----------- 248 (443)
++++.++=+..|.+.-+|.++|+...+..+.. ....+.|. |.++++|-..
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG-----------------~~rGL~f~--G~llvVgmSk~R~~~~f~glp 272 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG-----------------FTRGLAFA--GDFAFVGLSKLRESRVFGGLP 272 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCC-----------------CCccccee--CCEEEEEeccccCCCCcCCCc
Confidence 57777787888999999998887776655544 34456665 6666555321
Q ss_pred ---------CeEEEEECCCCeeeEEee--ccCCCeEEEEEe
Q 013436 249 ---------DCIYVYDLEANKLSLRIL--AHTSDVNTVCFG 278 (443)
Q Consensus 249 ---------g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~ 278 (443)
.-|.+.|++++..+..++ +--..+.++++-
T Consensus 273 l~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vL 313 (335)
T TIGR03032 273 IEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVL 313 (335)
T ss_pred hhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEe
Confidence 126677777776665443 333345555555
Done!