Query 013436
Match_columns 443
No_of_seqs 677 out of 3917
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 10:32:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 8.1E-43 2.8E-47 315.3 34.0 259 116-437 5-267 (304)
2 1vyh_C Platelet-activating fac 100.0 2.5E-42 8.7E-47 325.2 35.1 256 117-436 101-376 (410)
3 3frx_A Guanine nucleotide-bind 100.0 3.4E-41 1.2E-45 306.7 34.6 287 118-430 11-318 (319)
4 1vyh_C Platelet-activating fac 100.0 3.1E-41 1E-45 317.8 34.9 264 102-428 128-410 (410)
5 3ow8_A WD repeat-containing pr 100.0 2.6E-41 8.9E-46 307.5 33.3 256 119-436 27-286 (321)
6 3ow8_A WD repeat-containing pr 100.0 5.7E-41 1.9E-45 305.3 35.2 260 104-427 58-319 (321)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.7E-41 2.3E-45 308.2 35.3 295 117-436 8-342 (345)
8 1got_B GT-beta; complex (GTP-b 100.0 1.9E-40 6.4E-45 304.7 36.1 262 116-436 47-308 (340)
9 4gqb_B Methylosome protein 50; 100.0 9.3E-41 3.2E-45 306.1 33.7 250 121-432 79-334 (344)
10 2pbi_B Guanine nucleotide-bind 100.0 2.9E-40 9.9E-45 304.9 35.8 266 115-435 55-321 (354)
11 4ery_A WD repeat-containing pr 100.0 6.8E-40 2.3E-44 297.4 35.3 260 117-437 16-276 (312)
12 3iz6_a 40S ribosomal protein R 100.0 8.4E-41 2.9E-45 311.8 27.6 296 116-432 58-378 (380)
13 1got_B GT-beta; complex (GTP-b 100.0 2.8E-39 9.6E-44 296.9 37.0 263 102-426 75-340 (340)
14 2xzm_R RACK1; ribosome, transl 100.0 1.5E-39 5E-44 299.2 32.8 289 117-431 14-342 (343)
15 1erj_A Transcriptional repress 100.0 6E-39 2.1E-43 300.6 36.7 249 125-430 124-390 (393)
16 4gqb_B Methylosome protein 50; 100.0 1E-39 3.5E-44 299.2 27.0 255 121-433 27-293 (344)
17 4g56_B MGC81050 protein; prote 100.0 4.8E-39 1.6E-43 297.0 31.3 252 119-431 89-345 (357)
18 2hes_X YDR267CP; beta-propelle 100.0 1.6E-38 5.3E-43 290.6 33.0 291 117-429 7-328 (330)
19 2pm7_B Protein transport prote 100.0 1.9E-38 6.6E-43 285.6 33.1 258 119-428 4-284 (297)
20 1erj_A Transcriptional repress 100.0 3E-38 1E-42 295.9 34.2 265 122-436 62-348 (393)
21 4g56_B MGC81050 protein; prote 100.0 5.1E-39 1.7E-43 296.8 27.8 259 120-435 38-307 (357)
22 2pbi_B Guanine nucleotide-bind 100.0 2.9E-38 9.9E-43 291.5 32.6 264 102-426 84-354 (354)
23 1nr0_A Actin interacting prote 100.0 3E-38 1E-42 312.6 34.9 300 105-434 40-360 (611)
24 2ynn_A Coatomer subunit beta'; 100.0 1.2E-37 4.2E-42 281.3 34.3 264 103-429 34-302 (304)
25 4aow_A Guanine nucleotide-bind 100.0 2E-37 7E-42 284.3 33.9 289 118-431 32-339 (340)
26 3bg1_A Protein SEC13 homolog; 100.0 3.7E-39 1.3E-43 292.8 21.6 258 119-428 8-292 (316)
27 4e54_B DNA damage-binding prot 100.0 4E-38 1.4E-42 299.2 28.5 298 118-433 113-434 (435)
28 3zwl_B Eukaryotic translation 100.0 4.8E-37 1.6E-41 284.9 32.6 285 117-437 25-354 (369)
29 3dm0_A Maltose-binding peripla 100.0 3.2E-37 1.1E-41 310.2 32.8 286 118-428 376-692 (694)
30 3f3f_A Nucleoporin SEH1; struc 100.0 3.6E-37 1.2E-41 283.2 29.3 304 118-438 5-346 (351)
31 3ei3_B DNA damage-binding prot 100.0 1.3E-36 4.3E-41 284.1 32.5 291 115-429 64-382 (383)
32 3jrp_A Fusion protein of prote 100.0 1.7E-36 5.7E-41 282.4 32.2 263 116-430 3-288 (379)
33 4ery_A WD repeat-containing pr 100.0 1.2E-35 4.1E-40 269.4 36.7 262 103-428 44-311 (312)
34 4a11_B DNA excision repair pro 100.0 2.6E-36 8.8E-41 284.0 32.9 307 104-436 23-372 (408)
35 1gxr_A ESG1, transducin-like e 100.0 8.6E-36 2.9E-40 273.0 33.2 255 118-434 45-301 (337)
36 1nr0_A Actin interacting prote 100.0 1.5E-36 5.1E-41 300.5 29.7 251 122-436 16-277 (611)
37 2ymu_A WD-40 repeat protein; u 100.0 1.2E-35 4.1E-40 292.6 34.9 244 114-426 334-577 (577)
38 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-36 5.2E-41 292.0 26.7 282 119-428 202-516 (524)
39 4aez_A CDC20, WD repeat-contai 100.0 8.5E-35 2.9E-39 273.3 36.5 272 103-438 112-389 (401)
40 3dwl_C Actin-related protein 2 100.0 5.5E-37 1.9E-41 285.8 21.1 214 120-350 7-239 (377)
41 1sq9_A Antiviral protein SKI8; 100.0 8.4E-36 2.9E-40 279.7 29.3 275 104-431 36-397 (397)
42 3gre_A Serine/threonine-protei 100.0 1E-36 3.5E-41 289.9 22.9 296 115-437 53-367 (437)
43 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-35 6.3E-40 274.8 30.3 254 119-429 3-274 (372)
44 2pm9_A Protein WEB1, protein t 100.0 3.5E-35 1.2E-39 277.2 30.9 260 120-433 63-341 (416)
45 2ymu_A WD-40 repeat protein; u 100.0 8.5E-35 2.9E-39 286.5 34.5 253 114-436 293-545 (577)
46 1k8k_C P40, ARP2/3 complex 41 100.0 4.7E-35 1.6E-39 272.1 30.7 302 106-433 32-365 (372)
47 3k26_A Polycomb protein EED; W 100.0 1.8E-35 6.2E-40 274.0 26.4 254 123-429 68-366 (366)
48 1gxr_A ESG1, transducin-like e 100.0 1.4E-33 4.8E-38 258.3 38.4 242 122-428 95-336 (337)
49 3mkq_A Coatomer beta'-subunit; 100.0 5.8E-35 2E-39 299.4 32.2 257 117-436 6-266 (814)
50 1r5m_A SIR4-interacting protei 100.0 3.4E-34 1.2E-38 270.9 34.7 278 123-428 107-424 (425)
51 3vl1_A 26S proteasome regulato 100.0 1.4E-34 4.9E-39 273.5 32.1 262 105-430 79-366 (420)
52 4h5i_A Guanine nucleotide-exch 100.0 9.2E-35 3.2E-39 269.1 29.8 200 171-429 135-343 (365)
53 3dw8_B Serine/threonine-protei 100.0 4.3E-35 1.5E-39 279.3 28.2 271 122-433 26-377 (447)
54 1sq9_A Antiviral protein SKI8; 100.0 3.5E-35 1.2E-39 275.5 26.8 259 117-437 9-330 (397)
55 3odt_A Protein DOA1; ubiquitin 100.0 4.3E-34 1.5E-38 258.9 32.4 268 115-436 9-303 (313)
56 2pm9_A Protein WEB1, protein t 100.0 2.4E-36 8.1E-41 285.2 18.1 293 116-430 105-415 (416)
57 1r5m_A SIR4-interacting protei 100.0 7.8E-34 2.7E-38 268.4 33.0 248 121-431 42-363 (425)
58 3k26_A Polycomb protein EED; W 100.0 1.3E-34 4.4E-39 268.3 27.1 266 120-434 14-323 (366)
59 4gga_A P55CDC, cell division c 100.0 2.6E-33 8.9E-38 264.8 35.8 269 102-435 123-401 (420)
60 3jro_A Fusion protein of prote 100.0 6.4E-35 2.2E-39 295.1 26.0 264 118-431 3-287 (753)
61 4ggc_A P55CDC, cell division c 100.0 2.7E-33 9.1E-38 254.4 34.1 274 110-431 7-317 (318)
62 3i2n_A WD repeat-containing pr 100.0 2.1E-34 7.3E-39 266.0 27.2 287 104-432 44-356 (357)
63 1yfq_A Cell cycle arrest prote 100.0 1.1E-34 3.8E-39 266.3 24.9 264 120-437 7-290 (342)
64 3v7d_B Cell division control p 100.0 3.6E-33 1.2E-37 267.5 34.9 279 102-435 140-427 (464)
65 3mmy_A MRNA export factor; mRN 100.0 5.5E-34 1.9E-38 264.2 27.9 257 111-428 26-345 (368)
66 2j04_B YDR362CP, TAU91; beta p 100.0 6.1E-35 2.1E-39 280.8 21.1 257 123-430 132-429 (524)
67 3i2n_A WD repeat-containing pr 100.0 8.4E-34 2.9E-38 262.0 26.2 256 119-432 13-294 (357)
68 3v7d_B Cell division control p 100.0 2.4E-32 8.1E-37 261.8 35.5 246 118-434 115-386 (464)
69 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-32 3.6E-37 295.0 36.0 280 117-430 608-914 (1249)
70 3frx_A Guanine nucleotide-bind 100.0 9.6E-33 3.3E-37 250.9 30.4 222 158-436 6-234 (319)
71 3vl1_A 26S proteasome regulato 100.0 1.4E-32 4.8E-37 259.8 31.6 285 105-429 120-419 (420)
72 2xyi_A Probable histone-bindin 100.0 3.5E-33 1.2E-37 264.7 27.5 275 118-431 122-412 (430)
73 2aq5_A Coronin-1A; WD40 repeat 100.0 4.3E-33 1.5E-37 261.9 27.5 260 116-432 73-345 (402)
74 1p22_A F-BOX/WD-repeat protein 100.0 3.4E-32 1.2E-36 258.4 31.6 268 103-434 152-419 (435)
75 4aez_A CDC20, WD repeat-contai 100.0 4.2E-32 1.5E-36 254.9 31.2 245 121-433 88-340 (401)
76 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.9E-32 1E-36 250.6 28.5 213 164-429 10-225 (345)
77 3sfz_A APAF-1, apoptotic pepti 100.0 2.6E-32 8.8E-37 292.0 32.3 300 104-433 637-1038(1249)
78 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.4E-32 1.2E-36 259.6 29.1 271 124-430 4-342 (450)
79 1pgu_A Actin interacting prote 100.0 2.5E-32 8.5E-37 270.8 29.1 251 122-437 16-291 (615)
80 2pm7_B Protein transport prote 100.0 5.3E-32 1.8E-36 243.5 28.4 228 104-347 31-285 (297)
81 2oaj_A Protein SNI1; WD40 repe 100.0 5.4E-32 1.9E-36 277.6 32.2 203 121-350 14-245 (902)
82 1pgu_A Actin interacting prote 100.0 9.8E-32 3.3E-36 266.6 32.2 268 105-436 40-335 (615)
83 2aq5_A Coronin-1A; WD40 repeat 100.0 3.2E-32 1.1E-36 255.9 27.1 254 126-432 36-302 (402)
84 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.2E-31 7.4E-36 253.7 32.5 247 116-437 110-356 (445)
85 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.6E-31 1.6E-35 251.5 34.6 258 103-436 138-398 (445)
86 4h5i_A Guanine nucleotide-exch 100.0 1.2E-31 3.9E-36 248.3 29.1 203 121-347 130-343 (365)
87 3gre_A Serine/threonine-protei 100.0 4.9E-32 1.7E-36 257.5 27.3 281 122-426 109-437 (437)
88 2hes_X YDR267CP; beta-propelle 100.0 2.5E-31 8.7E-36 242.7 30.1 213 122-348 56-281 (330)
89 2xzm_R RACK1; ribosome, transl 100.0 7.2E-31 2.4E-35 241.2 33.2 211 117-351 69-289 (343)
90 1p22_A F-BOX/WD-repeat protein 100.0 5.1E-31 1.8E-35 250.3 32.5 235 121-431 130-367 (435)
91 3iz6_a 40S ribosomal protein R 100.0 2E-32 6.8E-37 255.2 21.1 262 102-379 86-361 (380)
92 3lrv_A PRE-mRNA-splicing facto 100.0 1.6E-32 5.5E-37 252.2 19.7 246 131-431 43-294 (343)
93 3mkq_A Coatomer beta'-subunit; 100.0 3.5E-31 1.2E-35 271.4 31.4 264 105-431 36-304 (814)
94 3dw8_B Serine/threonine-protei 100.0 2.1E-31 7.2E-36 253.8 27.8 218 117-350 74-376 (447)
95 4gga_A P55CDC, cell division c 100.0 2.3E-30 7.9E-35 244.6 34.3 248 127-437 108-361 (420)
96 1yfq_A Cell cycle arrest prote 100.0 6.3E-31 2.1E-35 241.3 29.6 238 117-421 49-315 (342)
97 3vu4_A KMHSV2; beta-propeller 100.0 5.3E-31 1.8E-35 243.0 28.0 281 117-433 12-340 (355)
98 3bg1_A Protein SEC13 homolog; 100.0 1.1E-31 3.9E-36 243.5 20.9 217 117-347 50-293 (316)
99 4gq1_A NUP37; propeller, trans 100.0 2.2E-31 7.5E-36 249.1 22.2 248 120-428 85-388 (393)
100 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-29 4.2E-34 241.9 33.5 206 120-345 98-337 (450)
101 2j04_A TAU60, YPL007P, hypothe 100.0 4.7E-31 1.6E-35 248.0 22.6 202 122-347 83-297 (588)
102 2oaj_A Protein SNI1; WD40 repe 100.0 2.7E-31 9.1E-36 272.5 21.8 283 116-436 427-790 (902)
103 3f3f_A Nucleoporin SEH1; struc 100.0 1E-29 3.5E-34 233.3 28.9 241 105-349 34-339 (351)
104 4e54_B DNA damage-binding prot 100.0 8.3E-31 2.8E-35 248.8 22.2 211 167-434 117-332 (435)
105 2j04_A TAU60, YPL007P, hypothe 100.0 3E-30 1E-34 242.5 25.0 237 115-428 43-296 (588)
106 3dm0_A Maltose-binding peripla 100.0 3E-29 1E-33 252.1 34.0 228 103-353 404-638 (694)
107 3dwl_C Actin-related protein 2 100.0 7.7E-31 2.6E-35 244.3 19.9 225 104-347 33-281 (377)
108 4a11_B DNA excision repair pro 100.0 7E-29 2.4E-33 233.2 32.2 209 121-350 96-368 (408)
109 1l0q_A Surface layer protein; 100.0 1.9E-28 6.5E-33 229.2 34.3 259 108-436 16-282 (391)
110 3jrp_A Fusion protein of prote 100.0 1.3E-29 4.4E-34 235.8 26.0 229 104-348 33-288 (379)
111 2w18_A PALB2, fancn, partner a 100.0 5.7E-29 1.9E-33 219.9 28.5 253 126-427 41-355 (356)
112 4ggc_A P55CDC, cell division c 100.0 1.2E-28 4.1E-33 223.6 31.1 228 103-348 44-316 (318)
113 2xyi_A Probable histone-bindin 100.0 7.4E-29 2.5E-33 234.9 30.0 221 114-347 171-410 (430)
114 4aow_A Guanine nucleotide-bind 100.0 1.1E-28 3.6E-33 226.2 30.1 240 141-436 9-253 (340)
115 3ei3_B DNA damage-binding prot 100.0 3.4E-29 1.2E-33 233.7 26.7 226 104-354 96-346 (383)
116 3lrv_A PRE-mRNA-splicing facto 100.0 3.8E-29 1.3E-33 229.7 25.9 215 105-347 59-292 (343)
117 3jro_A Fusion protein of prote 100.0 8.8E-30 3E-34 257.6 21.8 229 105-349 32-287 (753)
118 3zwl_B Eukaryotic translation 100.0 5.1E-28 1.7E-32 224.0 31.7 256 103-377 53-330 (369)
119 3bws_A Protein LP49; two-domai 100.0 2.3E-27 7.7E-32 225.0 34.0 242 119-428 164-431 (433)
120 3odt_A Protein DOA1; ubiquitin 100.0 7E-28 2.4E-32 218.0 26.2 237 103-351 38-300 (313)
121 2w18_A PALB2, fancn, partner a 100.0 1.5E-28 5.3E-33 217.1 21.1 198 125-345 112-355 (356)
122 4gq1_A NUP37; propeller, trans 100.0 3.2E-28 1.1E-32 227.7 20.7 222 118-347 130-389 (393)
123 3mmy_A MRNA export factor; mRN 100.0 5.7E-27 2E-31 216.8 25.7 234 105-347 65-346 (368)
124 3bws_A Protein LP49; two-domai 100.0 1.2E-26 4E-31 220.1 27.7 249 124-436 122-397 (433)
125 3vu4_A KMHSV2; beta-propeller 100.0 1.8E-26 6E-31 212.8 24.9 203 165-431 15-273 (355)
126 1l0q_A Surface layer protein; 100.0 1.8E-25 6.2E-30 208.9 31.1 231 137-436 3-240 (391)
127 1nir_A Nitrite reductase; hemo 99.9 1.8E-24 6.2E-29 209.6 28.2 284 114-437 169-522 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.8E-24 6E-29 203.5 23.2 243 119-431 112-389 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.6E-23 1.9E-27 193.2 29.9 205 114-347 168-387 (415)
130 2ojh_A Uncharacterized protein 99.9 4.1E-23 1.4E-27 184.7 25.8 241 117-420 34-293 (297)
131 3vgz_A Uncharacterized protein 99.9 2.3E-22 7.9E-27 185.0 29.9 255 124-436 40-310 (353)
132 1nir_A Nitrite reductase; hemo 99.9 1.1E-22 3.9E-27 197.0 27.9 232 131-429 144-402 (543)
133 2ecf_A Dipeptidyl peptidase IV 99.9 2.9E-23 1E-27 210.3 24.9 243 124-428 36-366 (741)
134 1ri6_A Putative isomerase YBHE 99.9 7.2E-22 2.5E-26 180.8 30.0 256 122-431 35-312 (343)
135 3u4y_A Uncharacterized protein 99.9 1.1E-21 3.9E-26 178.8 27.9 254 118-431 34-306 (331)
136 3hfq_A Uncharacterized protein 99.9 1.9E-21 6.5E-26 178.6 28.5 267 122-433 37-323 (347)
137 2ojh_A Uncharacterized protein 99.9 5.1E-22 1.8E-26 177.6 22.9 226 142-432 18-261 (297)
138 1xfd_A DIP, dipeptidyl aminope 99.9 7.6E-23 2.6E-27 206.7 18.2 198 126-347 18-289 (723)
139 1pby_B Quinohemoprotein amine 99.9 4E-21 1.4E-25 175.4 27.7 267 137-437 2-318 (337)
140 2oit_A Nucleoporin 214KDA; NH2 99.9 2E-22 6.9E-27 190.1 19.6 214 124-349 36-280 (434)
141 1jmx_B Amine dehydrogenase; ox 99.9 1.8E-21 6.3E-26 178.6 24.1 245 129-437 4-333 (349)
142 3o4h_A Acylamino-acid-releasin 99.9 1E-21 3.5E-26 193.3 22.5 241 124-433 21-278 (582)
143 2z3z_A Dipeptidyl aminopeptida 99.9 2.2E-21 7.5E-26 195.5 25.1 251 117-431 113-437 (706)
144 1xfd_A DIP, dipeptidyl aminope 99.9 1.4E-21 4.8E-26 197.5 23.5 230 106-344 39-341 (723)
145 1k32_A Tricorn protease; prote 99.9 5.7E-21 2E-25 200.3 27.8 196 123-347 294-502 (1045)
146 3u4y_A Uncharacterized protein 99.9 3.7E-20 1.3E-24 168.7 29.7 239 131-432 4-255 (331)
147 3scy_A Hypothetical bacterial 99.9 3.6E-19 1.2E-23 164.3 33.8 265 123-433 48-343 (361)
148 2oit_A Nucleoporin 214KDA; NH2 99.9 1.8E-21 6.1E-26 183.6 18.3 169 171-346 38-222 (434)
149 1ri6_A Putative isomerase YBHE 99.9 1.8E-20 6E-25 171.5 24.5 189 138-347 7-209 (343)
150 2ecf_A Dipeptidyl peptidase IV 99.9 3.3E-21 1.1E-25 195.3 20.6 207 126-347 110-367 (741)
151 3vgz_A Uncharacterized protein 99.9 3.6E-19 1.2E-23 163.6 30.3 201 124-347 88-303 (353)
152 2z3z_A Dipeptidyl aminopeptida 99.9 1.9E-20 6.7E-25 188.6 23.6 253 125-431 82-393 (706)
153 1k32_A Tricorn protease; prote 99.9 1.5E-20 5.2E-25 197.0 22.0 247 115-430 236-503 (1045)
154 1z68_A Fibroblast activation p 99.8 6.2E-21 2.1E-25 192.6 15.0 193 129-348 20-292 (719)
155 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.5E-18 5.2E-23 160.3 25.9 249 125-430 40-342 (365)
156 1q7f_A NHL, brain tumor CG1071 99.8 2.6E-17 8.9E-22 146.6 32.3 248 121-432 26-283 (286)
157 3pe7_A Oligogalacturonate lyas 99.8 1.3E-18 4.5E-23 162.1 24.1 253 116-432 22-332 (388)
158 4a5s_A Dipeptidyl peptidase 4 99.8 3.2E-19 1.1E-23 180.2 21.1 196 126-349 18-296 (740)
159 1pby_B Quinohemoprotein amine 99.8 3.9E-18 1.3E-22 155.4 24.5 196 126-348 35-311 (337)
160 3hfq_A Uncharacterized protein 99.8 1.3E-17 4.6E-22 152.9 26.5 211 121-346 82-316 (347)
161 3fvz_A Peptidyl-glycine alpha- 99.8 6.9E-17 2.4E-21 146.9 29.0 253 124-429 23-322 (329)
162 1z68_A Fibroblast activation p 99.8 2.4E-19 8.3E-24 180.9 13.9 205 126-347 61-346 (719)
163 1jmx_B Amine dehydrogenase; ox 99.8 1.6E-17 5.5E-22 152.2 23.8 198 126-348 44-326 (349)
164 3o4h_A Acylamino-acid-releasin 99.8 3E-18 1E-22 168.6 18.0 201 113-345 52-274 (582)
165 2xdw_A Prolyl endopeptidase; a 99.8 4.4E-16 1.5E-20 156.7 29.3 248 122-431 122-416 (710)
166 3azo_A Aminopeptidase; POP fam 99.8 2.8E-16 9.7E-21 157.0 27.6 211 112-345 55-321 (662)
167 3c5m_A Oligogalacturonate lyas 99.8 1.7E-17 5.8E-22 154.9 17.4 211 127-347 38-273 (396)
168 4a5s_A Dipeptidyl peptidase 4 99.8 9.4E-17 3.2E-21 162.3 23.3 304 108-433 40-453 (740)
169 3pe7_A Oligogalacturonate lyas 99.7 1.6E-16 5.5E-21 147.9 21.6 204 118-347 74-329 (388)
170 1jof_A Carboxy-CIS,CIS-muconat 99.7 4.7E-16 1.6E-20 143.6 24.5 190 138-347 4-224 (365)
171 3scy_A Hypothetical bacterial 99.7 1.3E-15 4.6E-20 140.3 26.6 209 122-346 97-336 (361)
172 3azo_A Aminopeptidase; POP fam 99.7 2.6E-16 8.9E-21 157.2 23.2 210 118-347 17-274 (662)
173 2oiz_A Aromatic amine dehydrog 99.7 6.8E-16 2.3E-20 142.0 23.9 243 129-436 54-343 (361)
174 3e5z_A Putative gluconolactona 99.7 6.3E-15 2.2E-19 131.8 28.7 250 116-432 19-289 (296)
175 2dg1_A DRP35, lactonase; beta 99.7 2.1E-14 7E-19 130.7 30.3 207 117-346 37-262 (333)
176 2bkl_A Prolyl endopeptidase; m 99.7 5.6E-16 1.9E-20 155.4 21.6 250 122-432 118-400 (695)
177 1rwi_B Serine/threonine-protei 99.7 1.1E-14 3.7E-19 128.3 25.8 243 126-433 25-268 (270)
178 2gop_A Trilobed protease; beta 99.7 5.2E-15 1.8E-19 135.5 23.4 179 126-344 16-250 (347)
179 3c5m_A Oligogalacturonate lyas 99.7 6.7E-16 2.3E-20 144.0 16.1 192 128-348 84-330 (396)
180 3no2_A Uncharacterized protein 99.7 3.5E-14 1.2E-18 125.1 26.1 188 135-350 4-198 (276)
181 1qks_A Cytochrome CD1 nitrite 99.7 7.8E-14 2.7E-18 134.9 29.8 277 124-437 196-546 (567)
182 1q7f_A NHL, brain tumor CG1071 99.7 6.3E-14 2.2E-18 124.6 26.6 201 122-348 74-281 (286)
183 2gop_A Trilobed protease; beta 99.7 3.3E-14 1.1E-18 130.1 24.9 183 125-347 59-291 (347)
184 3dsm_A Uncharacterized protein 99.6 7.4E-14 2.5E-18 126.7 25.3 248 125-437 44-309 (328)
185 1yr2_A Prolyl oligopeptidase; 99.6 1.8E-14 6.3E-19 145.5 23.5 202 123-346 161-392 (741)
186 2dg1_A DRP35, lactonase; beta 99.6 1.4E-14 4.8E-19 131.9 18.3 248 125-434 6-267 (333)
187 3fvz_A Peptidyl-glycine alpha- 99.6 8.4E-14 2.9E-18 126.5 23.0 213 122-347 88-322 (329)
188 1qks_A Cytochrome CD1 nitrite 99.6 7.6E-13 2.6E-17 127.9 30.3 191 134-348 165-374 (567)
189 2xdw_A Prolyl endopeptidase; a 99.6 1.3E-13 4.4E-18 138.7 25.8 246 134-434 81-373 (710)
190 2z2n_A Virginiamycin B lyase; 99.6 5.2E-12 1.8E-16 112.6 33.1 199 121-345 11-211 (299)
191 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.7E-12 9.2E-17 115.5 30.5 246 125-429 18-299 (314)
192 3e5z_A Putative gluconolactona 99.6 2.6E-13 8.9E-18 121.3 23.3 203 117-347 61-286 (296)
193 2z2n_A Virginiamycin B lyase; 99.6 2.8E-11 9.6E-16 107.9 33.4 198 123-346 55-254 (299)
194 3hrp_A Uncharacterized protein 99.6 6.3E-12 2.2E-16 117.2 29.1 200 125-347 131-354 (409)
195 3iuj_A Prolyl endopeptidase; h 99.5 8.6E-13 2.9E-17 132.1 24.2 202 122-347 126-359 (693)
196 2bkl_A Prolyl endopeptidase; m 99.5 5.8E-13 2E-17 133.6 22.3 192 134-348 77-305 (695)
197 1rwi_B Serine/threonine-protei 99.5 1.5E-12 5.3E-17 114.4 22.5 200 124-348 66-265 (270)
198 2qc5_A Streptogramin B lactona 99.5 5.4E-11 1.8E-15 106.1 32.6 197 123-345 18-216 (300)
199 2mad_H Methylamine dehydrogena 99.5 2.9E-11 9.9E-16 111.2 30.9 241 129-435 70-356 (373)
200 3sjl_D Methylamine dehydrogena 99.5 6.6E-12 2.3E-16 114.1 25.5 286 131-438 39-372 (386)
201 2oiz_A Aromatic amine dehydrog 99.5 7.1E-12 2.4E-16 115.1 24.9 202 124-348 107-335 (361)
202 3no2_A Uncharacterized protein 99.5 2.5E-11 8.4E-16 106.9 25.8 199 114-335 25-231 (276)
203 1xip_A Nucleoporin NUP159; bet 99.5 7.5E-13 2.6E-17 120.8 16.2 175 126-335 39-232 (388)
204 3dsm_A Uncharacterized protein 99.5 2.3E-11 8E-16 110.2 25.4 223 145-433 16-257 (328)
205 3g4e_A Regucalcin; six bladed 99.5 7.7E-11 2.6E-15 105.2 27.8 198 126-347 14-229 (297)
206 2qc5_A Streptogramin B lactona 99.5 4.3E-10 1.5E-14 100.1 31.8 198 123-346 60-259 (300)
207 3c75_H MADH, methylamine dehyd 99.4 3.5E-11 1.2E-15 111.4 24.0 281 134-436 82-409 (426)
208 3dr2_A Exported gluconolactona 99.4 1.2E-10 4.1E-15 104.3 26.2 204 116-346 36-266 (305)
209 1xip_A Nucleoporin NUP159; bet 99.4 7.7E-12 2.6E-16 114.1 17.4 153 171-347 39-191 (388)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.1E-10 3.7E-15 105.0 24.8 200 123-347 69-299 (314)
211 1yr2_A Prolyl oligopeptidase; 99.4 2.8E-11 9.7E-16 122.2 23.2 190 133-347 115-350 (741)
212 2ghs_A AGR_C_1268P; regucalcin 99.4 6.7E-10 2.3E-14 100.4 29.9 197 127-346 51-259 (326)
213 3g4e_A Regucalcin; six bladed 99.4 1.1E-09 3.7E-14 97.6 27.4 189 123-335 52-260 (297)
214 2mad_H Methylamine dehydrogena 99.3 8.1E-10 2.8E-14 101.5 25.8 192 132-347 28-243 (373)
215 2ghs_A AGR_C_1268P; regucalcin 99.3 3.3E-09 1.1E-13 95.8 27.7 185 124-336 89-291 (326)
216 2qe8_A Uncharacterized protein 99.3 5E-10 1.7E-14 102.1 22.2 211 125-347 17-278 (343)
217 3dr2_A Exported gluconolactona 99.3 5.6E-10 1.9E-14 100.0 21.1 194 117-338 78-298 (305)
218 1mda_H Methylamine dehydrogena 99.2 6.3E-10 2.2E-14 101.2 19.3 98 147-258 47-158 (368)
219 2ece_A 462AA long hypothetical 99.2 3.7E-09 1.3E-13 96.8 23.7 200 131-347 88-352 (462)
220 2hz6_A Endoplasmic reticulum t 99.2 2.3E-12 7.9E-17 118.6 2.5 185 180-434 8-197 (369)
221 3hrp_A Uncharacterized protein 99.2 2.6E-09 9E-14 99.5 22.6 198 130-345 176-408 (409)
222 1yiq_A Quinohemoprotein alcoho 99.1 4.7E-09 1.6E-13 104.4 21.4 288 135-437 120-513 (689)
223 3sjl_D Methylamine dehydrogena 99.1 5E-09 1.7E-13 95.2 19.6 214 130-350 83-366 (386)
224 2hz6_A Endoplasmic reticulum t 99.1 1.1E-11 3.7E-16 114.2 1.8 189 135-354 8-199 (369)
225 1kb0_A Quinohemoprotein alcoho 99.1 1E-08 3.4E-13 101.9 22.8 289 135-437 127-515 (677)
226 3c75_H MADH, methylamine dehyd 99.1 5.5E-09 1.9E-13 96.7 19.1 215 129-349 122-404 (426)
227 2qe8_A Uncharacterized protein 99.1 1.8E-08 6.1E-13 91.7 22.4 218 122-344 64-318 (343)
228 2iwa_A Glutamine cyclotransfer 99.1 8.9E-08 3E-12 82.4 24.2 194 127-348 23-238 (266)
229 1fwx_A Nitrous oxide reductase 99.1 3.2E-08 1.1E-12 93.8 22.8 251 134-431 99-433 (595)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.0 7.2E-08 2.5E-12 88.9 24.0 231 135-435 52-302 (376)
231 3iuj_A Prolyl endopeptidase; h 99.0 1E-08 3.5E-13 102.5 19.2 158 167-348 126-315 (693)
232 3nol_A Glutamine cyclotransfer 99.0 1E-07 3.4E-12 81.0 20.1 180 127-336 45-244 (262)
233 3q7m_A Lipoprotein YFGL, BAMB; 99.0 8.1E-07 2.8E-11 81.8 28.1 232 135-436 102-344 (376)
234 2fp8_A Strictosidine synthase; 98.9 1.6E-06 5.4E-11 78.0 27.8 202 126-345 20-267 (322)
235 1npe_A Nidogen, entactin; glyc 98.9 2.8E-06 9.6E-11 74.1 28.6 189 137-347 2-198 (267)
236 3qqz_A Putative uncharacterize 98.9 3E-06 1E-10 72.4 27.5 210 119-344 21-250 (255)
237 1mda_H Methylamine dehydrogena 98.9 3.9E-08 1.3E-12 89.5 16.6 211 129-353 69-352 (368)
238 2iwa_A Glutamine cyclotransfer 98.9 5.8E-07 2E-11 77.3 22.8 154 171-349 22-183 (266)
239 2ece_A 462AA long hypothetical 98.8 7.8E-07 2.7E-11 81.5 22.5 193 126-335 139-399 (462)
240 3mbr_X Glutamine cyclotransfer 98.8 2.3E-06 8E-11 72.0 23.0 181 127-336 23-223 (243)
241 3hxj_A Pyrrolo-quinoline quino 98.8 5.7E-07 2E-11 81.0 20.9 176 136-345 107-282 (330)
242 1kb0_A Quinohemoprotein alcoho 98.8 6.6E-07 2.3E-11 88.8 21.8 202 136-350 174-510 (677)
243 3nok_A Glutaminyl cyclase; bet 98.8 6.1E-07 2.1E-11 76.2 18.2 180 127-336 57-254 (268)
244 1fwx_A Nitrous oxide reductase 98.8 1E-06 3.4E-11 83.7 21.4 190 139-348 18-309 (595)
245 1kv9_A Type II quinohemoprotei 98.8 7.8E-07 2.7E-11 88.2 21.3 167 136-310 117-338 (668)
246 2p4o_A Hypothetical protein; p 98.8 1.8E-05 6.1E-10 70.5 28.3 197 125-346 32-241 (306)
247 1npe_A Nidogen, entactin; glyc 98.7 1.6E-05 5.3E-10 69.3 26.8 197 126-348 37-239 (267)
248 1k3i_A Galactose oxidase precu 98.7 2.4E-07 8.3E-12 91.9 16.7 119 129-262 190-327 (656)
249 2xe4_A Oligopeptidase B; hydro 98.7 1.7E-06 5.9E-11 87.1 22.2 200 122-345 170-398 (751)
250 2ad6_A Methanol dehydrogenase 98.7 6.8E-06 2.3E-10 79.8 25.4 169 136-312 115-342 (571)
251 1yiq_A Quinohemoprotein alcoho 98.7 1.1E-06 3.8E-11 87.4 19.9 197 128-332 238-533 (689)
252 3nol_A Glutamine cyclotransfer 98.7 3.2E-06 1.1E-10 71.8 19.7 156 169-351 42-205 (262)
253 1ijq_A LDL receptor, low-densi 98.6 0.00014 4.7E-09 65.0 29.9 184 138-347 3-195 (316)
254 1w6s_A Methanol dehydrogenase 98.6 1.7E-05 5.9E-10 77.0 25.5 177 130-312 111-349 (599)
255 3v64_C Agrin; beta propeller, 98.6 0.0001 3.5E-09 66.8 29.1 197 124-347 33-234 (349)
256 3hxj_A Pyrrolo-quinoline quino 98.6 6.8E-07 2.3E-11 80.5 14.5 184 124-345 59-242 (330)
257 3tc9_A Hypothetical hydrolase; 98.6 2.7E-05 9.4E-10 72.7 24.6 154 126-300 138-300 (430)
258 1flg_A Protein (quinoprotein e 98.5 3.9E-05 1.3E-09 74.6 25.5 170 136-312 117-362 (582)
259 2fp8_A Strictosidine synthase; 98.5 2.5E-05 8.6E-10 70.0 22.7 196 125-347 80-313 (322)
260 3mbr_X Glutamine cyclotransfer 98.5 3.8E-05 1.3E-09 64.6 21.8 161 167-353 18-185 (243)
261 4a2l_A BT_4663, two-component 98.5 0.00027 9.4E-09 71.8 32.6 198 124-347 356-571 (795)
262 3nok_A Glutaminyl cyclase; bet 98.5 3.6E-05 1.2E-09 65.4 21.2 154 170-350 55-213 (268)
263 3p5b_L Low density lipoprotein 98.5 0.00026 8.7E-09 65.5 29.1 185 137-347 84-277 (400)
264 3v65_B Low-density lipoprotein 98.5 0.00014 4.6E-09 67.0 26.8 195 126-347 78-277 (386)
265 4a2l_A BT_4663, two-component 98.5 0.00028 9.7E-09 71.7 31.1 203 124-347 262-480 (795)
266 1kv9_A Type II quinohemoprotei 98.4 1.7E-05 5.9E-10 78.6 20.8 198 136-353 66-339 (668)
267 2xe4_A Oligopeptidase B; hydro 98.4 4.1E-05 1.4E-09 77.1 22.9 156 171-347 175-354 (751)
268 4hw6_A Hypothetical protein, I 98.4 0.00036 1.2E-08 65.2 27.6 198 126-345 140-372 (433)
269 3qqz_A Putative uncharacterize 98.4 0.00042 1.4E-08 59.1 25.6 166 164-347 21-204 (255)
270 1k3i_A Galactose oxidase precu 98.4 9.6E-06 3.3E-10 80.5 17.4 205 125-347 243-497 (656)
271 1w6s_A Methanol dehydrogenase 98.4 5.7E-05 2E-09 73.4 22.2 200 136-354 62-349 (599)
272 3sov_A LRP-6, low-density lipo 98.3 0.00059 2E-08 60.8 26.1 181 145-347 12-197 (318)
273 3v9f_A Two-component system se 98.3 0.00069 2.4E-08 68.7 29.7 199 124-347 312-524 (781)
274 3kya_A Putative phosphatase; s 98.3 0.00034 1.1E-08 65.7 24.7 158 126-300 140-340 (496)
275 3v65_B Low-density lipoprotein 98.3 0.00044 1.5E-08 63.6 25.2 203 124-350 115-321 (386)
276 2p4o_A Hypothetical protein; p 98.3 0.00062 2.1E-08 60.4 25.5 198 124-338 71-279 (306)
277 2ad6_A Methanol dehydrogenase 98.3 0.00012 4.1E-09 71.0 21.9 198 136-354 62-342 (571)
278 3v64_C Agrin; beta propeller, 98.3 0.00081 2.8E-08 60.9 25.7 202 125-350 73-278 (349)
279 3v9f_A Two-component system se 98.2 0.00068 2.3E-08 68.7 27.2 199 124-348 362-569 (781)
280 3p5b_L Low density lipoprotein 98.2 0.0028 9.5E-08 58.5 28.7 207 121-351 108-324 (400)
281 1ijq_A LDL receptor, low-densi 98.2 0.0029 9.9E-08 56.3 27.9 207 124-352 29-243 (316)
282 2p9w_A MAL S 1 allergenic prot 98.2 0.00066 2.3E-08 59.7 22.2 213 128-347 16-265 (334)
283 3m0c_C LDL receptor, low-densi 98.2 0.0013 4.4E-08 66.0 27.4 187 138-347 397-589 (791)
284 1flg_A Protein (quinoprotein e 98.1 0.00019 6.5E-09 69.8 19.1 195 129-332 250-544 (582)
285 3sov_A LRP-6, low-density lipo 98.1 0.0019 6.6E-08 57.4 23.3 202 126-351 36-242 (318)
286 4hw6_A Hypothetical protein, I 98.0 0.00083 2.9E-08 62.7 21.1 204 119-346 176-432 (433)
287 3amr_A 3-phytase; beta-propell 98.0 0.0035 1.2E-07 55.6 23.3 193 135-346 39-262 (355)
288 2vpj_A Kelch-like protein 12; 98.0 0.0029 9.8E-08 55.8 23.3 188 135-347 14-231 (301)
289 1n7d_A LDL receptor, low-densi 98.0 4E-05 1.4E-09 76.3 12.1 178 145-347 385-571 (699)
290 3tc9_A Hypothetical hydrolase; 98.0 0.00036 1.2E-08 65.2 17.4 154 171-347 138-301 (430)
291 2p9w_A MAL S 1 allergenic prot 98.0 0.00061 2.1E-08 59.9 17.5 161 172-347 15-215 (334)
292 3m0c_C LDL receptor, low-densi 98.0 0.0051 1.7E-07 61.7 26.3 207 122-351 421-636 (791)
293 2ism_A Putative oxidoreductase 98.0 0.0034 1.2E-07 56.8 23.1 208 126-347 32-297 (352)
294 2xn4_A Kelch-like protein 2; s 97.9 0.0021 7.3E-08 56.7 21.0 187 135-347 15-229 (302)
295 4a0p_A LRP6, LRP-6, low-densit 97.8 0.03 1E-06 54.8 28.6 186 138-347 8-197 (628)
296 3ii7_A Kelch-like protein 7; p 97.8 0.0048 1.6E-07 54.5 21.1 187 136-347 12-225 (306)
297 3amr_A 3-phytase; beta-propell 97.8 0.0074 2.5E-07 53.6 20.9 145 181-346 40-209 (355)
298 3a9g_A Putative uncharacterize 97.8 0.022 7.7E-07 51.4 25.0 211 125-347 29-296 (354)
299 1zgk_A Kelch-like ECH-associat 97.7 0.0086 2.9E-07 53.0 21.8 188 134-347 23-240 (308)
300 2xbg_A YCF48-like protein; pho 97.7 0.023 7.9E-07 50.7 27.1 188 124-340 79-272 (327)
301 4asc_A Kelch repeat and BTB do 97.7 0.0082 2.8E-07 53.3 21.3 183 138-347 7-221 (315)
302 3sre_A PON1, serum paraoxonase 97.6 0.012 4.2E-07 52.8 21.0 200 126-344 51-295 (355)
303 3s94_A LRP-6, low-density lipo 97.6 0.022 7.5E-07 55.7 23.8 181 144-347 16-202 (619)
304 1n7d_A LDL receptor, low-densi 97.5 0.00058 2E-08 67.9 11.8 204 125-352 406-619 (699)
305 1bpo_A Protein (clathrin); cla 97.5 0.054 1.9E-06 49.3 24.1 230 145-434 47-294 (494)
306 3s94_A LRP-6, low-density lipo 97.5 0.022 7.5E-07 55.7 22.3 202 125-350 40-246 (619)
307 2woz_A Kelch repeat and BTB do 97.5 0.043 1.5E-06 48.6 22.5 183 138-347 18-231 (318)
308 2xbg_A YCF48-like protein; pho 97.5 0.054 1.9E-06 48.2 30.0 194 125-344 36-231 (327)
309 2uvk_A YJHT; unknown function, 97.4 0.012 4E-07 53.3 18.4 71 135-208 19-103 (357)
310 3kya_A Putative phosphatase; s 97.3 0.014 4.7E-07 54.9 17.9 160 172-346 141-340 (496)
311 4a0p_A LRP6, LRP-6, low-densit 97.3 0.15 5E-06 49.9 26.2 199 125-349 37-239 (628)
312 3ii7_A Kelch-like protein 7; p 97.3 0.012 4E-07 51.9 16.7 188 135-347 55-272 (306)
313 3pbp_A Nucleoporin NUP82; beta 97.3 0.024 8.3E-07 51.4 17.8 161 132-297 28-208 (452)
314 2xn4_A Kelch-like protein 2; s 97.3 0.026 9E-07 49.5 18.4 187 135-347 61-276 (302)
315 3ei3_A DNA damage-binding prot 97.2 0.099 3.4E-06 54.9 24.9 145 239-429 844-999 (1158)
316 2xzh_A Clathrin heavy chain 1; 97.2 0.096 3.3E-06 45.8 26.3 228 146-434 49-295 (365)
317 2vpj_A Kelch-like protein 12; 97.2 0.022 7.7E-07 49.9 17.0 188 135-347 62-278 (301)
318 4asc_A Kelch repeat and BTB do 97.0 0.045 1.5E-06 48.4 17.4 193 129-347 39-277 (315)
319 2be1_A Serine/threonine-protei 96.9 0.041 1.4E-06 48.9 15.9 195 137-352 11-236 (339)
320 1zgk_A Kelch-like ECH-associat 96.9 0.041 1.4E-06 48.5 15.9 187 135-347 70-287 (308)
321 2woz_A Kelch repeat and BTB do 96.9 0.088 3E-06 46.6 18.1 193 130-347 51-287 (318)
322 3pbp_A Nucleoporin NUP82; beta 96.8 0.15 5E-06 46.4 18.8 110 235-347 28-158 (452)
323 2g8s_A Glucose/sorbosone dehyd 96.7 0.32 1.1E-05 43.7 25.0 153 126-287 19-214 (353)
324 3ei3_A DNA damage-binding prot 96.6 0.92 3.1E-05 47.7 30.0 193 123-337 552-757 (1158)
325 1xi4_A Clathrin heavy chain; a 96.6 0.095 3.2E-06 55.1 17.6 230 145-435 47-295 (1630)
326 2xzh_A Clathrin heavy chain 1; 96.5 0.36 1.2E-05 42.3 29.4 202 129-350 71-293 (365)
327 2ism_A Putative oxidoreductase 96.5 0.37 1.3E-05 43.3 19.7 202 124-335 74-333 (352)
328 3a9g_A Putative uncharacterize 96.5 0.45 1.5E-05 42.8 21.9 198 124-335 72-330 (354)
329 2zwa_A Leucine carboxyl methyl 96.5 0.22 7.7E-06 49.4 19.4 198 134-347 396-635 (695)
330 2be1_A Serine/threonine-protei 96.5 0.09 3.1E-06 46.7 14.8 144 182-344 11-181 (339)
331 1tl2_A L10, protein (tachylect 96.4 0.17 5.8E-06 41.5 14.8 158 171-348 42-209 (236)
332 1tl2_A L10, protein (tachylect 96.2 0.18 6E-06 41.4 13.7 149 126-294 42-203 (236)
333 1cru_A Protein (soluble quinop 96.1 0.4 1.4E-05 44.8 17.9 111 126-246 28-162 (454)
334 1cru_A Protein (soluble quinop 96.1 0.42 1.5E-05 44.6 18.0 109 172-289 29-162 (454)
335 3s25_A Hypothetical 7-bladed b 96.0 0.5 1.7E-05 41.3 17.0 173 132-347 21-216 (302)
336 3das_A Putative oxidoreductase 95.8 0.9 3.1E-05 40.5 17.9 151 172-334 34-219 (347)
337 1bpo_A Protein (clathrin); cla 95.8 1.1 3.9E-05 40.8 29.4 202 129-350 70-292 (494)
338 2g8s_A Glucose/sorbosone dehyd 95.8 0.36 1.2E-05 43.4 15.6 106 172-289 20-148 (353)
339 3sre_A PON1, serum paraoxonase 95.8 1 3.6E-05 40.2 22.6 141 189-347 81-252 (355)
340 2uvk_A YJHT; unknown function, 95.6 0.27 9.2E-06 44.2 14.3 191 135-349 65-344 (357)
341 3ott_A Two-component system se 95.6 2.2 7.6E-05 42.7 24.4 195 124-348 62-261 (758)
342 2zwa_A Leucine carboxyl methyl 95.1 0.84 2.9E-05 45.2 16.9 152 135-300 451-634 (695)
343 1xi4_A Clathrin heavy chain; a 95.0 2.7 9.4E-05 44.6 20.2 204 129-352 70-294 (1630)
344 3s25_A Hypothetical 7-bladed b 94.6 2.1 7.3E-05 37.3 20.0 176 129-347 57-255 (302)
345 3das_A Putative oxidoreductase 94.5 2.5 8.5E-05 37.6 23.1 215 124-347 31-292 (347)
346 3sbq_A Nitrous-oxide reductase 92.9 6.5 0.00022 37.3 20.7 94 139-247 73-196 (638)
347 3qhy_B Beta-lactamase inhibito 91.6 6.1 0.00021 33.9 15.4 183 126-347 64-246 (282)
348 3qhy_B Beta-lactamase inhibito 86.7 14 0.00049 31.6 18.1 184 126-348 25-208 (282)
349 3q6k_A 43.2 kDa salivary prote 84.6 22 0.00076 31.9 21.3 206 125-334 87-341 (381)
350 3ott_A Two-component system se 83.7 37 0.0013 33.8 31.0 196 126-347 192-401 (758)
351 4gq2_M Nucleoporin NUP120; bet 83.3 31 0.0011 35.5 15.7 39 125-163 236-274 (950)
352 2wg3_C Hedgehog-interacting pr 82.9 30 0.001 32.1 14.3 115 172-291 16-159 (463)
353 4gq2_M Nucleoporin NUP120; bet 82.2 29 0.00098 35.8 14.9 38 229-266 237-274 (950)
354 3sbq_A Nitrous-oxide reductase 82.2 35 0.0012 32.4 21.9 76 270-347 323-408 (638)
355 3b7f_A Glycosyl hydrolase, BNR 79.0 36 0.0012 30.5 20.8 190 137-338 23-254 (394)
356 3uc1_A DNA gyrase subunit A; D 78.5 34 0.0012 30.0 23.3 209 126-347 43-279 (327)
357 3b7f_A Glycosyl hydrolase, BNR 77.8 39 0.0013 30.3 26.5 166 124-292 54-254 (394)
358 4hvt_A Ritya.17583.B, post-pro 76.6 62 0.0021 32.0 17.7 204 126-348 130-382 (711)
359 3f7f_A Nucleoporin NUP120; nuc 70.6 49 0.0017 32.5 12.0 37 171-209 223-259 (729)
360 3f7f_A Nucleoporin NUP120; nuc 68.9 47 0.0016 32.6 11.5 37 229-267 223-259 (729)
361 3q6k_A 43.2 kDa salivary prote 68.9 65 0.0022 28.9 16.2 92 250-346 124-252 (381)
362 3uc1_A DNA gyrase subunit A; D 67.8 63 0.0021 28.3 21.7 168 125-300 95-278 (327)
363 3no0_A DNA gyrase subunit A; D 66.8 59 0.002 27.6 21.4 205 124-347 23-246 (276)
364 1wp5_A Topoisomerase IV; broke 65.5 69 0.0024 27.9 24.5 204 134-347 3-225 (323)
365 4fhn_B Nucleoporin NUP120; pro 60.8 32 0.0011 36.2 9.5 38 172-209 240-277 (1139)
366 1suu_A DNA gyrase subunit A; t 60.1 85 0.0029 27.2 21.6 159 179-347 6-181 (312)
367 2wg3_C Hedgehog-interacting pr 58.2 1.2E+02 0.004 28.1 28.7 116 126-247 15-158 (463)
368 3zwu_A Alkaline phosphatase PH 56.4 29 0.00098 33.3 7.5 59 172-245 478-548 (592)
369 3no0_A DNA gyrase subunit A; D 55.9 94 0.0032 26.3 22.3 118 229-349 69-198 (276)
370 3zwu_A Alkaline phosphatase PH 55.5 48 0.0016 31.8 8.8 60 126-187 477-548 (592)
371 4a9v_A PHOX; hydrolase, beta-p 53.3 48 0.0016 31.6 8.2 61 171-246 477-549 (592)
372 4fhn_B Nucleoporin NUP120; pro 52.8 15 0.00051 38.8 5.3 40 125-164 238-277 (1139)
373 1zvt_A Topoisomerase IV subuni 52.3 1E+02 0.0035 25.7 14.0 106 241-348 4-115 (256)
374 1zi0_A DNA gyrase subunit A; b 46.6 1.4E+02 0.0048 25.7 27.8 204 134-347 1-226 (307)
375 1suu_A DNA gyrase subunit A; t 42.5 1.7E+02 0.0057 25.3 27.9 205 134-348 6-232 (312)
376 1olz_A Semaphorin 4D; developm 41.4 2.1E+02 0.0071 27.9 11.0 70 126-195 398-477 (663)
377 4hvt_A Ritya.17583.B, post-pro 41.3 2.7E+02 0.0092 27.4 19.1 35 170-204 129-169 (711)
378 4a9v_A PHOX; hydrolase, beta-p 41.0 1.7E+02 0.0059 27.9 9.9 62 125-188 476-549 (592)
379 2cn3_A Xyloglucanase, beta-1,4 35.2 3.4E+02 0.012 26.8 19.2 63 125-188 23-91 (737)
380 1sqj_A OXG-RCBH, oligoxylogluc 34.6 3.6E+02 0.012 26.9 18.2 157 169-342 14-196 (789)
381 3al9_A Plexin-A2; beta-propell 31.4 94 0.0032 29.4 6.6 71 125-195 400-476 (539)
382 1zi0_A DNA gyrase subunit A; b 30.7 2.6E+02 0.0088 24.0 24.9 208 127-347 44-277 (307)
383 3kci_A Probable E3 ubiquitin-p 24.0 3.8E+02 0.013 23.7 25.3 205 126-343 106-341 (389)
384 3mez_B Mannose-specific lectin 23.8 1.9E+02 0.0066 20.3 9.9 26 320-347 59-84 (113)
385 1wp5_A Topoisomerase IV; broke 22.3 3.8E+02 0.013 23.1 26.6 211 126-347 40-277 (323)
386 3v4v_A Integrin alpha-4; cell 21.4 5.4E+02 0.019 24.6 10.6 119 128-256 169-311 (597)
387 1q47_A Semaphorin 3A; beta pro 20.7 2.1E+02 0.0073 26.6 6.8 70 126-195 405-487 (495)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.1e-43 Score=315.28 Aligned_cols=259 Identities=18% Similarity=0.275 Sum_probs=222.1
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
....+.+|.+.|++++|+|++++|++|+.||.|+|||+.++..+.. ...|..+|.+++|+|++++|++|+.|+.|++
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS---IQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE---EECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEE---eeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 3456889999999999999999999999999999999999866553 4567778999999999999999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEeeccCCCeEE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT 274 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~ 274 (443)
||+.+++...... +|...|.+++|+|++++|++|+.|+.|++||++++ .....+.+|...|.+
T Consensus 82 wd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 82 FNYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (304)
T ss_dssp EETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred EECCCCcEEEEEe----------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence 9999887644322 46668999999999999999999999999999887 555678899999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee-cCCCCCeEEEEECC--CCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
++|+|.++.+|++|+.|+.|++||++ .......+ .+|...+..++|+| ++.+|++++.|++|++||+++
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~---- 217 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---- 217 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT----
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECC----CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC----
Confidence 99996688999999999999999998 44444444 45668899999987 778999999999999999998
Q ss_pred cccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
.+.+..+.+|...... + .|+|++.+|++|+.||.|++||+.+++
T Consensus 218 ------------------------------~~~~~~~~~h~~~v~~--~----~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 218 ------------------------------KSCVATLEGHMSNVSF--A----VFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp ------------------------------TEEEEEEECCSSCEEE--E----EECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred ------------------------------CccceeeCCCCCCEEE--E----EECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 5678889999854332 3 356689999999999999999999988
Q ss_pred hhhHhH
Q 013436 432 ILFCRQ 437 (443)
Q Consensus 432 ~~~~~~ 437 (443)
++..+.
T Consensus 262 ~~~~~~ 267 (304)
T 2ynn_A 262 VEKTLN 267 (304)
T ss_dssp EEEEEC
T ss_pred eeeecc
Confidence 766543
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-42 Score=325.20 Aligned_cols=256 Identities=21% Similarity=0.288 Sum_probs=228.3
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
...+.+|.++|++++|+|++++|++|+.||+|+|||+.++.... ...+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 45678999999999999999999999999999999999986544 456788899999999999999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 276 (443)
|+.+++..... .+|...|.+++|+|++.+|++|+.|+.|++||++++.++..+.+|...|.++.
T Consensus 178 d~~~~~~~~~~----------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 178 DFQGFECIRTM----------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp ETTSSCEEECC----------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred eCCCCceeEEE----------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 99887654332 24677999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC--------------------CCEEEEEeC
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--------------------GRYLISNGK 336 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~s~~~ 336 (443)
++ +++.+|++|+.|+.|++||++ .+.+...+.+|...|.+++|+|+ +.+|++++.
T Consensus 242 ~~-~~g~~l~s~s~D~~v~vwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 242 PN-QDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp EC-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred EC-CCCCEEEEEcCCCeEEEEECC----CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 97 889999999999999999998 78888899999999999999996 678999999
Q ss_pred CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEe
Q 013436 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (443)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg 416 (443)
|+.|++||+++ +..+..+.+|...+. .+ .|+|+|++|++|
T Consensus 317 D~~i~iwd~~~----------------------------------~~~~~~~~~h~~~v~--~v----~~~~~g~~l~s~ 356 (410)
T 1vyh_C 317 DKTIKMWDVST----------------------------------GMCLMTLVGHDNWVR--GV----LFHSGGKFILSC 356 (410)
T ss_dssp TSEEEEEETTT----------------------------------TEEEEEEECCSSCEE--EE----EECSSSSCEEEE
T ss_pred CCeEEEEECCC----------------------------------CceEEEEECCCCcEE--EE----EEcCCCCEEEEE
Confidence 99999999998 567888888885433 33 356689999999
Q ss_pred eCCCeEEEEEccChhhhhHh
Q 013436 417 SHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 417 ~~dg~v~iwd~~~g~~~~~~ 436 (443)
+.||.|++||+.+++.+..+
T Consensus 357 s~D~~i~vwd~~~~~~~~~~ 376 (410)
T 1vyh_C 357 ADDKTLRVWDYKNKRCMKTL 376 (410)
T ss_dssp ETTTEEEEECCTTSCCCEEE
T ss_pred eCCCeEEEEECCCCceEEEE
Confidence 99999999999988876554
No 3
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.4e-41 Score=306.72 Aligned_cols=287 Identities=17% Similarity=0.224 Sum_probs=228.9
Q ss_pred ccccCCCCceEEEEECCCC-CEEEEEECCCeEEEEECCCCe--EEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 118 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
..+.+|.+.|++++|+|++ ++|++|+.|++|++|++.... .........+|...|.+++|+|++++|++++.|++|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 4578999999999999965 899999999999999986421 1122335668999999999999999999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEE
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 274 (443)
+||+.+++...... +|...|.+++|+|++.+|++|+.|+.|++||++ ++++..+.+|...|.+
T Consensus 91 ~wd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~ 153 (319)
T 3frx_A 91 LWDVATGETYQRFV----------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ 153 (319)
T ss_dssp EEETTTTEEEEEEE----------------CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEE
T ss_pred EEECCCCCeeEEEc----------------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEE
Confidence 99999887643322 467799999999999999999999999999996 4567788899999999
Q ss_pred EEEeCC-----CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 275 VCFGDE-----SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 275 i~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
+.++|. ++..+++++.|+.|++||++ ..+....+.+|...|++++|+|++++|++++.||.|++||+++.+
T Consensus 154 ~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLN----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp EEECCC------CCEEEEEETTSCEEEEETT----TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred EEEccCCCCCCCccEEEEEeCCCEEEEEECC----cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 999843 35589999999999999998 778888899999999999999999999999999999999999876
Q ss_pred CccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceee-------------eeeEEEecCCccCCccEEEEe
Q 013436 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR-------------TLIRCHFSPVYSTGQKYIYTG 416 (443)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~s~d~~~l~tg 416 (443)
.+..... ...+..+.++|++..+.......+..+....... .......+.+|||||++|++|
T Consensus 230 ~~~~~~~-----~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg 304 (319)
T 3frx_A 230 AMYTLSA-----QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304 (319)
T ss_dssp EEEEEEC-----CSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred EEEEecC-----CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe
Confidence 5544322 1235567777777766655444443332211000 000112344577899999999
Q ss_pred eCCCeEEEEEccCh
Q 013436 417 SHDSCVYVYDLVSI 430 (443)
Q Consensus 417 ~~dg~v~iwd~~~g 430 (443)
+.||.|++||+.++
T Consensus 305 ~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 305 YTDNVIRVWQVMTA 318 (319)
T ss_dssp ETTSCEEEEEEEEC
T ss_pred ecCceEEEEEEeec
Confidence 99999999999875
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-41 Score=317.81 Aligned_cols=264 Identities=21% Similarity=0.316 Sum_probs=230.9
Q ss_pred ccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC
Q 013436 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (443)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~ 181 (443)
.+....++.....+....+.+|...|.+++|+|++++|++|+.|++|+|||+.++..+. ...+|...|.+++|+|++
T Consensus 128 ~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~ 204 (410)
T 1vyh_C 128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNG 204 (410)
T ss_dssp SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSS
T ss_pred CCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCC
Confidence 34556677777777788899999999999999999999999999999999999886554 456788899999999999
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 013436 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (443)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 261 (443)
++|++++.|+.|++||+.++....... +|...|.++.|+|++.+|++|+.|+.|++||+.++++
T Consensus 205 ~~l~s~s~D~~i~~wd~~~~~~~~~~~----------------~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~ 268 (410)
T 1vyh_C 205 DHIVSASRDKTIKMWEVQTGYCVKTFT----------------GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268 (410)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEE----------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEe----------------CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 999999999999999999887644322 3666899999999999999999999999999999999
Q ss_pred eEEeeccCCCeEEEEEeCCC-------------------CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEE
Q 013436 262 SLRILAHTSDVNTVCFGDES-------------------GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (443)
Q Consensus 262 ~~~~~~~~~~v~~i~~~~~~-------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 322 (443)
...+..|...|.+++|+|.. +.+|++|+.|+.|++||++ .+.++..+.+|...|+++
T Consensus 269 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~----~~~~~~~~~~h~~~v~~v 344 (410)
T 1vyh_C 269 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS----TGMCLMTLVGHDNWVRGV 344 (410)
T ss_dssp EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT----TTEEEEEEECCSSCEEEE
T ss_pred eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC----CCceEEEEECCCCcEEEE
Confidence 99999999999999998532 6799999999999999998 888999999999999999
Q ss_pred EECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEe
Q 013436 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (443)
Q Consensus 323 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (443)
+|+|++++|++++.|+.|++||+++ .+.+..+.+|...+. .+
T Consensus 345 ~~~~~g~~l~s~s~D~~i~vwd~~~----------------------------------~~~~~~~~~h~~~v~--~l-- 386 (410)
T 1vyh_C 345 LFHSGGKFILSCADDKTLRVWDYKN----------------------------------KRCMKTLNAHEHFVT--SL-- 386 (410)
T ss_dssp EECSSSSCEEEEETTTEEEEECCTT----------------------------------SCCCEEEECCSSCEE--EE--
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCC----------------------------------CceEEEEcCCCCcEE--EE--
Confidence 9999999999999999999999987 445677888875433 33
Q ss_pred cCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 403 SPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 403 ~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
.|+|++.+|++|+.||.|++|+++
T Consensus 387 --~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 387 --DFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp --EECSSSSCEEEEETTSEEEEEC--
T ss_pred --EEcCCCCEEEEEeCCCcEEEEeCC
Confidence 356689999999999999999863
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=307.46 Aligned_cols=256 Identities=16% Similarity=0.246 Sum_probs=221.7
Q ss_pred cccCCCCceEEEEECCC----CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 119 PVDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~----~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
.+.+|.+.|++++|+|+ +.+|++|+.|++|+||++.++... ......+|...|.+++|+|++.++++++.|+.|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 45689999999999985 679999999999999999876432 3335678999999999999999999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEE
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 274 (443)
+||+.+++...... .+...+.+++|+|++++|++|+.+|.|++||+++++....+..|...|.+
T Consensus 106 lWd~~~~~~~~~~~----------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 106 LWDLENGKQIKSID----------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169 (321)
T ss_dssp EEETTTTEEEEEEE----------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEE
T ss_pred EEECCCCCEEEEEe----------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEE
Confidence 99999887644332 12336888999999999999999999999999999998899999999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
++|+ +++++|++|+.|+.|++||++ +++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 170 ~~~s-pdg~~lasg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~------- 237 (321)
T 3ow8_A 170 IAYS-PDGKYLASGAIDGIINIFDIA----TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH------- 237 (321)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-------
T ss_pred EEEC-CCCCEEEEEcCCCeEEEEECC----CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-------
Confidence 9998 889999999999999999998 8889999999999999999999999999999999999999987
Q ss_pred CCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
...+..+.+|...+. . .+|+|++++|++|+.||.|++||+.+++++.
T Consensus 238 ---------------------------~~~~~~~~~h~~~v~--~----~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 238 ---------------------------ANLAGTLSGHASWVL--N----VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp ---------------------------CCEEEEECCCSSCEE--E----EEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ---------------------------cceeEEEcCCCCceE--E----EEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 455778888875433 2 3466689999999999999999999988766
Q ss_pred Hh
Q 013436 435 CR 436 (443)
Q Consensus 435 ~~ 436 (443)
.+
T Consensus 285 ~~ 286 (321)
T 3ow8_A 285 TF 286 (321)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.7e-41 Score=305.26 Aligned_cols=260 Identities=22% Similarity=0.324 Sum_probs=224.6
Q ss_pred ccceeecccccC--CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC
Q 013436 104 CCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (443)
Q Consensus 104 ~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~ 181 (443)
....+|...... ..+.+.+|...|.+++|++++.++++|+.|++|++||+.+++.+.. ...+...+.+++|+|++
T Consensus 58 ~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~---~~~~~~~~~~~~~spdg 134 (321)
T 3ow8_A 58 DLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKS---IDAGPVDAWTLAFSPDS 134 (321)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE---EECCTTCCCCEEECTTS
T ss_pred CCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEE---EeCCCccEEEEEECCCC
Confidence 334455443222 2456889999999999999999999999999999999999976654 33456678899999999
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 013436 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (443)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 261 (443)
++|++++.|+.|++|++.+++...... .|...|.+++|+|++++|++|+.||.|++||+++++.
T Consensus 135 ~~l~~g~~dg~v~i~~~~~~~~~~~~~----------------~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~ 198 (321)
T 3ow8_A 135 QYLATGTHVGKVNIFGVESGKKEYSLD----------------TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL 198 (321)
T ss_dssp SEEEEECTTSEEEEEETTTCSEEEEEE----------------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CEEEEEcCCCcEEEEEcCCCceeEEec----------------CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 999999999999999999886543322 2334799999999999999999999999999999999
Q ss_pred eEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEE
Q 013436 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (443)
Q Consensus 262 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 341 (443)
+..+.+|..+|++++|+ +++++|++|+.|+.|++||++ ....+..+.+|...|.+++|+|++++|++++.|++|+
T Consensus 199 ~~~~~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 199 LHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQ----HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp EEEECCCSSCCCEEEEC-TTSCEEEEECTTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEcccCCceeEEEEc-CCCCEEEEEcCCCeEEEEECC----CcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 99999999999999998 789999999999999999998 7788889999999999999999999999999999999
Q ss_pred EEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCe
Q 013436 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (443)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~ 421 (443)
+||+++ .+.+..+.+|...+. +..|+|++++|++++.||.
T Consensus 274 iwd~~~----------------------------------~~~~~~~~~h~~~v~------~v~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 274 VWDVGT----------------------------------RTCVHTFFDHQDQVW------GVKYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp EEETTT----------------------------------TEEEEEECCCSSCEE------EEEECTTSSEEEEEETTCC
T ss_pred EEeCCC----------------------------------CEEEEEEcCCCCcEE------EEEECCCCCEEEEEeCCCe
Confidence 999988 567888888874332 3346669999999999999
Q ss_pred EEEEEc
Q 013436 422 VYVYDL 427 (443)
Q Consensus 422 v~iwd~ 427 (443)
|++||.
T Consensus 314 i~vwd~ 319 (321)
T 3ow8_A 314 IHIYDC 319 (321)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999996
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.7e-41 Score=308.24 Aligned_cols=295 Identities=18% Similarity=0.238 Sum_probs=219.6
Q ss_pred CccccCCCC-ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 117 PWPVDQTTS-RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 117 ~~~~~~h~~-~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
...+.+|.. .|++++|+|+|++||+|+.|++|+|||+.++..........+|...|.+++|+|++++|++++.|+.|++
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 345678887 9999999999999999999999999999988655555556789999999999999999999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC---eeeEEeeccCCCe
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSDV 272 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v 272 (443)
|++.++.......+ .+|...|.+++|+|++++|++|+.|+.|++||++++ .++..+..|...|
T Consensus 88 w~~~~~~~~~~~~~--------------~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v 153 (345)
T 3fm0_A 88 WKKNQDDFECVTTL--------------EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153 (345)
T ss_dssp EEECCC-EEEEEEE--------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred EEccCCCeEEEEEc--------------cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence 99987654322221 247779999999999999999999999999999876 3456677899999
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCc--eeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
.+++|+ +++++|++++.|+.|++||.+ ... +...+.+|...|++++|+|++++|++++.|++|+|||......
T Consensus 154 ~~~~~~-p~~~~l~s~s~d~~i~~w~~~----~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~ 228 (345)
T 3fm0_A 154 KHVVWH-PSQELLASASYDDTVKLYREE----EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN 228 (345)
T ss_dssp EEEEEC-SSSSCEEEEETTSCEEEEEEE----TTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTC
T ss_pred EEEEEC-CCCCEEEEEeCCCcEEEEEec----CCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCC
Confidence 999998 788999999999999999997 443 4577889999999999999999999999999999999754332
Q ss_pred ccccCCccc------------ccCcccccccCCCCCCcccCC-CCeeEEEE--------------------eccceeeee
Q 013436 351 NASCNLGFR------------SYEWDYRWMDYPPQARDLKHP-CDQSVATY--------------------KGHSVLRTL 397 (443)
Q Consensus 351 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------------------~~~~~~~~~ 397 (443)
......... .+...+..+.+.++...+... .+..+..+ .+|.. .+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~--~V 306 (345)
T 3fm0_A 229 EQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ--DV 306 (345)
T ss_dssp TTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS--CE
T ss_pred CccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC--cE
Confidence 211110000 011122334444444333221 11222222 23442 23
Q ss_pred eEEEecCCccCCc-cEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 398 IRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 398 ~~~~~~~~~s~d~-~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
..+ +|+|++ .+|++|+.||.|++|++.+++.+...
T Consensus 307 ~~v----~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 307 NCV----AWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEE----EECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred eEe----EEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 333 455566 59999999999999999998876554
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.9e-40 Score=304.68 Aligned_cols=262 Identities=19% Similarity=0.294 Sum_probs=220.5
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
....+.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+.. ...|...|.+++|+|++++|++++.|+.|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE---EECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE---eecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3456889999999999999999999999999999999999876654 3457778999999999999999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 275 (443)
|++.+........ . ...+|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|...|.++
T Consensus 124 w~~~~~~~~~~~~--~----------~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~ 190 (340)
T 1got_B 124 YNLKTREGNVRVS--R----------ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190 (340)
T ss_dssp EETTTCSBSCEEE--E----------EEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EECccCCCcceeE--E----------EecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence 9998764211100 0 0114667899999998775 8899999999999999999999999999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccC
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (443)
+|+ ++++++++|+.|+.|++||++ .+.++..+.+|...|++++|+|++++|++++.|+.|++||+++
T Consensus 191 ~~~-~~~~~l~sg~~d~~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-------- 257 (340)
T 1got_B 191 SLA-PDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-------- 257 (340)
T ss_dssp EEC-TTSSEEEEEETTSCEEEEETT----TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred EEC-CCCCEEEEEeCCCcEEEEECC----CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC--------
Confidence 998 789999999999999999998 7888999999999999999999999999999999999999987
Q ss_pred CcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhH
Q 013436 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFC 435 (443)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~ 435 (443)
.+.+..+..+.....+..+ .|+|+|++|++|+.||.|++||+.+++.+..
T Consensus 258 --------------------------~~~~~~~~~~~~~~~v~~~----~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~ 307 (340)
T 1got_B 258 --------------------------DQELMTYSHDNIICGITSV----SFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307 (340)
T ss_dssp --------------------------TEEEEEECCTTCCSCEEEE----EECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred --------------------------CcEEEEEccCCcccceEEE----EECCCCCEEEEECCCCeEEEEEcccCcEeeE
Confidence 3444444432221223333 4666999999999999999999988876554
Q ss_pred h
Q 013436 436 R 436 (443)
Q Consensus 436 ~ 436 (443)
+
T Consensus 308 ~ 308 (340)
T 1got_B 308 L 308 (340)
T ss_dssp E
T ss_pred e
Confidence 3
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.3e-41 Score=306.15 Aligned_cols=250 Identities=12% Similarity=0.083 Sum_probs=206.8
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEe-eecCCccceEEEEEECCCCCeEEEEECCCeEEEEECC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 199 (443)
..|...|.+++|+|++ .|++|+.||+|+|||+.+++.+... ....+|...|++++|+|++++|++|+.|+.|++||+.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 4567889999999985 6889999999999999988544332 3455789999999999999999999999999999999
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecCCeEEEEECCCCeeeEEee--ccCCCeEEEE
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVC 276 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~ 276 (443)
+++...... +|...|.+++|+|++. +|++|+.|+.|++||+++++....+. .+...+.+++
T Consensus 158 ~~~~~~~~~----------------~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 221 (344)
T 4gqb_B 158 QQVVLSSYR----------------AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA 221 (344)
T ss_dssp TTEEEEEEC----------------CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred CCcEEEEEc----------------CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence 887654332 5777999999999884 78999999999999999998887764 4566799999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC-CEEEEEeCCCCEEEEeCCCCCCccccC
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (443)
|+|.++++|++|+.|+.|++||++ .++++..+.+|...|++++|+|++ ++|++++.|++|+|||+++
T Consensus 222 ~~p~~~~~l~sg~~dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-------- 289 (344)
T 4gqb_B 222 WHPQQSEVFVFGDENGTVSLVDTK----STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-------- 289 (344)
T ss_dssp ECSSCTTEEEEEETTSEEEEEESC----C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--------
T ss_pred ecCCCCcceEEeccCCcEEEEECC----CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Confidence 997788999999999999999998 888999999999999999999997 5799999999999999987
Q ss_pred CcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCcc-EEEEeeCCCeEEEEEccChhh
Q 013436 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~tg~~dg~v~iwd~~~g~~ 432 (443)
++ +..+.+|... +..+. |+|+++ +|++|+.||+|++|++.+..+
T Consensus 290 --------------------------~~-~~~~~~H~~~--V~~v~----~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 290 --------------------------SE-LFRSQAHRDF--VRDAT----WSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp --------------------------CE-EEEECCCSSC--EEEEE----ECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred --------------------------Cc-EEEEcCCCCC--EEEEE----EeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 22 4567788754 33344 455665 678999999999999987654
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.9e-40 Score=304.91 Aligned_cols=266 Identities=17% Similarity=0.239 Sum_probs=221.7
Q ss_pred CCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
+....+.+|...|++++|+|++++|++|+.||+|+|||..++..... ...|...|.+++|+|++.+|++++.|+.++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~---~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA---VTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---EECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE---EecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 33456889999999999999999999999999999999998866554 334566799999999999999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEE
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 274 (443)
+|++............. ...+|...|.+++|+|++..|++++.|+.|++||+++++++..+.+|...|.+
T Consensus 132 v~~~~~~~~~~~~~~~~----------~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~ 201 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKK----------SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLC 201 (354)
T ss_dssp EEECCCCTTCCSGGGCE----------EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEeccccccccccce----------eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEE
Confidence 99987653221111100 01136678999999999999999999999999999999999999999999999
Q ss_pred EEEeCC-CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccc
Q 013436 275 VCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 275 i~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (443)
++++|. ++++|++|+.|+.|++||++ .++++..+.+|...|++++|+|++.+|++++.|++|++||++.
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~------ 271 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA------ 271 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT------
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC------
Confidence 999853 56899999999999999998 8889999999999999999999999999999999999999987
Q ss_pred cCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhh
Q 013436 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
...+..+..+.....+..+ .|+|++++|++|+.||.|++||+.+++.+
T Consensus 272 ----------------------------~~~~~~~~~~~~~~~~~~~----~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 319 (354)
T 2pbi_B 272 ----------------------------DREVAIYSKESIIFGASSV----DFSLSGRLLFAGYNDYTINVWDVLKGSRV 319 (354)
T ss_dssp ----------------------------TEEEEEECCTTCCSCEEEE----EECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred ----------------------------CcEEEEEcCCCcccceeEE----EEeCCCCEEEEEECCCcEEEEECCCCceE
Confidence 3444455444322222333 46669999999999999999999988765
Q ss_pred hH
Q 013436 434 FC 435 (443)
Q Consensus 434 ~~ 435 (443)
..
T Consensus 320 ~~ 321 (354)
T 2pbi_B 320 SI 321 (354)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 11
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.8e-40 Score=297.42 Aligned_cols=260 Identities=28% Similarity=0.471 Sum_probs=225.4
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
...+.+|...|++++|+|++++|++|+.||.|++|++.++..... ...|...|.+++|+|++++|++++.|+.|++|
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh---hccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 346789999999999999999999999999999999998865543 46788899999999999999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 276 (443)
|+.+++...... +|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|..+|.+++
T Consensus 93 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 93 DVSSGKCLKTLK----------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred ECCCCcEEEEEc----------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE
Confidence 999887644322 3556899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec-CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccC
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (443)
|+ +++++|++++.|+.|++||++ .++.+..+. .+...+..++|+|++++|++++.|+.|++||+++
T Consensus 157 ~~-~~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------- 223 (312)
T 4ery_A 157 FN-RDGSLIVSSSYDGLCRIWDTA----SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-------- 223 (312)
T ss_dssp EC-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT--------
T ss_pred Ec-CCCCEEEEEeCCCcEEEEECC----CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC--------
Confidence 97 789999999999999999998 667666654 5667899999999999999999999999999988
Q ss_pred CcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhH
Q 013436 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFC 435 (443)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~ 435 (443)
.+.+..+.+|......+...+++ +++.+|++|+.||.|++||+.+++++..
T Consensus 224 --------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 274 (312)
T 4ery_A 224 --------------------------GKCLKTYTGHKNEKYCIFANFSV---TGGKWIVSGSEDNLVYIWNLQTKEIVQK 274 (312)
T ss_dssp --------------------------TEEEEEECSSCCSSSCCCEEEEC---SSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred --------------------------CcEEEEEEecCCceEEEEEEEEe---CCCcEEEEECCCCEEEEEECCCchhhhh
Confidence 56677888887555444444443 3789999999999999999999887765
Q ss_pred hH
Q 013436 436 RQ 437 (443)
Q Consensus 436 ~~ 437 (443)
++
T Consensus 275 ~~ 276 (312)
T 4ery_A 275 LQ 276 (312)
T ss_dssp EC
T ss_pred hh
Confidence 43
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.4e-41 Score=311.77 Aligned_cols=296 Identities=16% Similarity=0.168 Sum_probs=231.3
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
....+.+|.+.|++++|+|++++|++|+.|++|+|||+.++..... ...|...|.+++|+|++++|++++.|+.|++
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~---~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA---IKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE---EECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE---EecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 3456889999999999999999999999999999999999866553 4567778999999999999999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEecCCeEEEEECCCCeeeEEe-----eccC
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRI-----LAHT 269 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~ 269 (443)
|++.+........ .......+|...|.++.|+|+ +..|++|+.|+.|++||+++++.+..+ .+|.
T Consensus 135 w~~~~~~~~~~~~---------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~ 205 (380)
T 3iz6_a 135 FNLSSQADRDGNM---------PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT 205 (380)
T ss_dssp EECCCCSSCCCSS---------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred EECCCCccccCCc---------cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence 9997643211000 000112367788999999996 457999999999999999999988777 5789
Q ss_pred CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
..|.+++|++.++++|++|+.|+.|++||++. ....+..+.+|...|++++|+|++++|++++.|++|++||+++..
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRI---TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTT---TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCC---CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence 99999999877999999999999999999972 346778899999999999999999999999999999999999876
Q ss_pred CccccCCccc---ccCcccccccCCCCCCcccCC-CCeeEEE-----------E----eccceeeeeeEEEecCCccCCc
Q 013436 350 SNASCNLGFR---SYEWDYRWMDYPPQARDLKHP-CDQSVAT-----------Y----KGHSVLRTLIRCHFSPVYSTGQ 410 (443)
Q Consensus 350 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~----~~~~~~~~~~~~~~~~~~s~d~ 410 (443)
.......... .....+..+.+++++..+... .+..+.. + .+|...+ .+..|+|||
T Consensus 283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v------~~l~~s~dg 356 (380)
T 3iz6_a 283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI------SCLGLSSDG 356 (380)
T ss_dssp EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCC------CEEEECSSS
T ss_pred EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCce------EEEEECCCC
Confidence 5544332111 111124556677776655443 2222333 3 3344322 233467799
Q ss_pred cEEEEeeCCCeEEEEEccChhh
Q 013436 411 KYIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 411 ~~l~tg~~dg~v~iwd~~~g~~ 432 (443)
++|++|+.||.|+||++..++.
T Consensus 357 ~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 357 SALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp SEEEEECTTSCEEEEECCSSSS
T ss_pred CEEEEeeCCCCEEEEecCCCcc
Confidence 9999999999999999987653
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.8e-39 Score=296.85 Aligned_cols=263 Identities=20% Similarity=0.302 Sum_probs=222.8
Q ss_pred ccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeE-EEEeeecCCccceEEEEEECCC
Q 013436 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSPD 180 (443)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~i~~s~~ 180 (443)
.+....+|..........+..|...|.+++|+|++++|++|+.|+.|++|++.++.. ........+|...|.++.|+++
T Consensus 75 ~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (340)
T 1got_B 75 QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154 (340)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET
T ss_pred CCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC
Confidence 344555777666677778889999999999999999999999999999999987531 1122245578889999999988
Q ss_pred CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe
Q 013436 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (443)
Q Consensus 181 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 260 (443)
+. +++++.|+.|++||+.+++...... +|...|.+++|+|++++|++|+.|+.|++||+++++
T Consensus 155 ~~-l~s~s~d~~i~~wd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~ 217 (340)
T 1got_B 155 NQ-IVTSSGDTTCALWDIETGQQTTTFT----------------GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217 (340)
T ss_dssp TE-EEEEETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred Cc-EEEEECCCcEEEEECCCCcEEEEEc----------------CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe
Confidence 75 8999999999999999887543322 466689999999999999999999999999999999
Q ss_pred eeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec--CCCCCeEEEEECCCCCEEEEEeCCC
Q 013436 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKDQ 338 (443)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg 338 (443)
++..+.+|...|++++|+ +++++|++|+.|+.|++||++ ....+..+. .+...|++++|+|++++|++++.|+
T Consensus 218 ~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 218 CRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLR----ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292 (340)
T ss_dssp EEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEEcCCcCCEEEEEEc-CCCCEEEEEcCCCcEEEEECC----CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC
Confidence 999999999999999998 789999999999999999998 666666554 2345799999999999999999999
Q ss_pred CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC
Q 013436 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (443)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~ 418 (443)
.|++||+.+ ...+..+.+|...+..+ .|+|+|.+|++|+.
T Consensus 293 ~i~vwd~~~----------------------------------~~~~~~~~~h~~~v~~~------~~s~dg~~l~s~s~ 332 (340)
T 1got_B 293 NCNVWDALK----------------------------------ADRAGVLAGHDNRVSCL------GVTDDGMAVATGSW 332 (340)
T ss_dssp EEEEEETTT----------------------------------CCEEEEEECCSSCEEEE------EECTTSSCEEEEET
T ss_pred eEEEEEccc----------------------------------CcEeeEeecCCCcEEEE------EEcCCCCEEEEEcC
Confidence 999999987 45677888998544332 46679999999999
Q ss_pred CCeEEEEE
Q 013436 419 DSCVYVYD 426 (443)
Q Consensus 419 dg~v~iwd 426 (443)
||.|+|||
T Consensus 333 D~~i~iWd 340 (340)
T 1got_B 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CccEEecC
Confidence 99999997
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-39 Score=299.19 Aligned_cols=289 Identities=15% Similarity=0.204 Sum_probs=221.2
Q ss_pred CccccCCCCceEEEEE-----CC-CCCEEEEEECCCeEEEEECCCCeE----EEEeeecCCccceEEEEEECCCCCeEEE
Q 013436 117 PWPVDQTTSRAYVSQF-----SA-DGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~-----s~-~~~~l~~g~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 186 (443)
...+.+|.+.|++++| ++ ++++|++|+.|++|+|||+.++.. ........+|...|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 4568899999999999 77 999999999999999999975421 1122346788999999999999999999
Q ss_pred EECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee
Q 013436 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (443)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 266 (443)
++.|+.|++||+.+++...... +|...|.+++|+|++++|++++.|+.|++||+.... .....
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~----------------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~ 156 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFV----------------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSA 156 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEE----------------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEc----------------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeee
Confidence 9999999999999886543322 466799999999999999999999999999997443 33333
Q ss_pred ---ccCCCeEEEEEeCCC---------CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEE
Q 013436 267 ---AHTSDVNTVCFGDES---------GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 267 ---~~~~~v~~i~~~~~~---------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 334 (443)
.|...|.+++|+|.. +.+|++++.|+.|++||. .......+.+|...|++++|+|++++|+++
T Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-----~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-----TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-----CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 688899999998432 278999999999999995 567777888999999999999999999999
Q ss_pred eCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceee------------------e
Q 013436 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR------------------T 396 (443)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~ 396 (443)
+.|+.|++||++......... .....+..+.++|+...+....+..+..+....... .
T Consensus 232 s~dg~v~iwd~~~~~~~~~~~----~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 232 GKDKKLLIWDILNLTYPQREF----DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp ETTCEEEEEESSCCSSCSEEE----ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred cCCCeEEEEECCCCcccceee----cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 999999999995533221110 111224556667776655544444444443211000 0
Q ss_pred eeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 397 ~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
....+.+.+|+|+|++|++|+.||.|++|++.+|+
T Consensus 308 ~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 00112344577799999999999999999998764
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6e-39 Score=300.62 Aligned_cols=249 Identities=24% Similarity=0.359 Sum_probs=211.5
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
..|.+++|+|+|++|++|+.|+.|+|||+.+++.+. ...+|...|.+++|+|++++|++++.|+.|++||+.+++..
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE
Confidence 359999999999999999999999999999986554 35678889999999999999999999999999999988764
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEe-------eccCCCeEEEE
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI-------LAHTSDVNTVC 276 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~i~ 276 (443)
.... +...+.+++|+| ++++|++|+.|+.|++||+++++.+..+ .+|...|.+++
T Consensus 201 ~~~~-----------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 201 LTLS-----------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp EEEE-----------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred EEEE-----------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEE
Confidence 4332 122699999999 8999999999999999999999877766 57899999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCC--------CCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNV--------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
|+ +++++|++|+.|+.|++||++.... .+.+...+.+|...|.+++|+|++.+|++++.|+.|++||+++
T Consensus 264 ~~-~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~- 341 (393)
T 1erj_A 264 FT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS- 341 (393)
T ss_dssp EC-TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT-
T ss_pred EC-CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC-
Confidence 98 8899999999999999999974211 1345667789999999999999999999999999999999988
Q ss_pred CCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecC--CccCCccEEEEeeCCCeEEEEE
Q 013436 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP--VYSTGQKYIYTGSHDSCVYVYD 426 (443)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~d~~~l~tg~~dg~v~iwd 426 (443)
+..+..+.+|...+. .+.|++ .++|++++|++|+.||.|+||+
T Consensus 342 ---------------------------------~~~~~~l~~h~~~v~--~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 342 ---------------------------------GNPLLMLQGHRNSVI--SVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp ---------------------------------CCEEEEEECCSSCEE--EEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred ---------------------------------CeEEEEECCCCCCEE--EEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 566788899985444 445554 4788999999999999999999
Q ss_pred ccCh
Q 013436 427 LVSI 430 (443)
Q Consensus 427 ~~~g 430 (443)
+...
T Consensus 387 ~~~~ 390 (393)
T 1erj_A 387 YKKI 390 (393)
T ss_dssp EEEC
T ss_pred cccc
Confidence 8653
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=299.21 Aligned_cols=255 Identities=18% Similarity=0.168 Sum_probs=202.0
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeE--------EEEeeecCCccceEEEEEECCCCCeEEEEECCCe
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~ 192 (443)
..|...|.+++|+|||++|++++ |+++++||...... .........+...|.+++|+|++ .|++++.||.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 35677899999999999999887 67888887321100 00000111234569999999985 6889999999
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCe
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 272 (443)
|+|||+.+++......... .+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|
T Consensus 105 v~lWd~~~~~~~~~~~~~~------------~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCK------------YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp EEEEEECTTSSCEEEEEEE------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred EEEEeccCCCceeEeeccc------------cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 9999999887654333211 1477799999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec--CCCCCeEEEEECCC-CCEEEEEeCCCCEEEEeCCCCC
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
++++|++.+..+|++++.|+.|++||++ .+++...+. .|...+++++|+|+ +++|++++.||.|+|||+++
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-- 246 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTR----CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-- 246 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETT----SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred EEEEecCCCCCceeeecccccccccccc----ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC--
Confidence 9999986666789999999999999998 677776654 45567999999984 67889999999999999998
Q ss_pred CccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCc-cEEEEeeCCCeEEEEEcc
Q 013436 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~tg~~dg~v~iwd~~ 428 (443)
.+.+..+.+|...+. .+. |+|++ ++|++|+.||+|+|||+.
T Consensus 247 --------------------------------~~~~~~~~~h~~~v~--~v~----fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 247 --------------------------------TSCVLSSAVHSQCVT--GLV----FSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp ----------------------------------CCEEEECCSSCEE--EEE----ECSSSSCCEEEEETTSCEEEECTT
T ss_pred --------------------------------CcEEEEEcCCCCCEE--EEE----EccCCCeEEEEEeCCCeEEEEECC
Confidence 455778888885433 333 55577 689999999999999999
Q ss_pred Chhhh
Q 013436 429 SIQIL 433 (443)
Q Consensus 429 ~g~~~ 433 (443)
+++++
T Consensus 289 ~~~~~ 293 (344)
T 4gqb_B 289 LSELF 293 (344)
T ss_dssp CCEEE
T ss_pred CCcEE
Confidence 88765
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.8e-39 Score=297.03 Aligned_cols=252 Identities=14% Similarity=0.106 Sum_probs=201.5
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEe-eecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
...+|...|.+++|+|++++ ++++.||+|+|||+.+++..... ....+|...|++++|+|++++|++++.|+.|++||
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp EEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 34578999999999999864 56778999999999887544322 23457888999999999999999999999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecCCeEEEEECCCCeeeEEee--ccCCCeEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNT 274 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~ 274 (443)
+.+++...... +|...|.+++|+|++. ++++++.||.|++||++++++...+. .+...+.+
T Consensus 168 ~~~~~~~~~~~----------------~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~ 231 (357)
T 4g56_B 168 LSQKAVLKSYN----------------AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTS 231 (357)
T ss_dssp TTTTEEEEEEC----------------CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEE
T ss_pred CCCCcEEEEEc----------------CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccc
Confidence 99887654332 4666899999999875 78999999999999999988766544 56778999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC-CEEEEEeCCCCEEEEeCCCCCCccc
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (443)
++|+|.++.+|++|+.|+.|++||++ .++.+..+.+|...|++++|+|++ ++|++++.|++|+|||+++
T Consensus 232 v~~sp~~~~~la~g~~d~~i~~wd~~----~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~------ 301 (357)
T 4g56_B 232 VTWHPEKDDTFACGDETGNVSLVNIK----NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF------ 301 (357)
T ss_dssp EEECTTSTTEEEEEESSSCEEEEESS----CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS------
T ss_pred hhhhhcccceEEEeecccceeEEECC----CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC------
Confidence 99997778899999999999999998 788899999999999999999987 6789999999999999987
Q ss_pred cCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
++.+ ...+|... +..+.|+|. |+++|++|+.||+|++||+.+..
T Consensus 302 ----------------------------~~~~-~~~~H~~~--V~~vafsP~---d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 302 ----------------------------SEVF-RDLSHRDF--VTGVAWSPL---DHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ----------------------------CEEE-EECCCSSC--EEEEEECSS---STTEEEEEETTSCEEEEECC---
T ss_pred ----------------------------CcEe-EECCCCCC--EEEEEEeCC---CCCEEEEEcCCCeEEEEECCCCC
Confidence 3333 34467643 334444443 79999999999999999997643
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-38 Score=290.57 Aligned_cols=291 Identities=17% Similarity=0.212 Sum_probs=205.4
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCe-EEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
...+.+|.++|++++|+|+ +||+|+.|++|++||+.++. ..........|...|.+++|+|++++|++++.|+.|++
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 4567899999999999998 99999999999999998753 22222212348889999999999999999999999999
Q ss_pred EECCCCceec-cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCC----CeeeEEeeccCC
Q 013436 196 VDVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA----NKLSLRILAHTS 270 (443)
Q Consensus 196 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~ 270 (443)
||+....... ..... ....+|...|.+++|+|++++|++|+.|+.|++||++. .+++..+.+|..
T Consensus 85 w~~~~~~~~~~~~~~~----------~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 154 (330)
T 2hes_X 85 WAKEESADRTFEMDLL----------AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154 (330)
T ss_dssp EEC-------CCCEEE----------EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred EEcccCcCccccceeE----------EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence 9986432100 00000 01135788999999999999999999999999999943 256677889999
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCC--ceeeeecCCCCCeEEEEECCC--CCEEEEEeCCCCEEEEeCC
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG--KPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~ 346 (443)
.|.+++|+ +++.+|++|+.|+.|++||.+ .. +++..+.+|...|.+++|+|+ +.+|++++.|++|++||++
T Consensus 155 ~v~~v~~~-p~~~~l~s~s~D~~i~iW~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 155 DVKHVIWH-PSEALLASSSYDDTVRIWKDY----DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp CEEEEEEC-SSSSEEEEEETTSCEEEEEEE----TTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred ceEEEEEC-CCCCEEEEEcCCCeEEEEECC----CCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence 99999998 789999999999999999987 44 678889999999999999998 7789999999999999997
Q ss_pred CCCCccc----cCCccc-ccCcccccccCCCCCCcccCCCCeeEEEEe--------------ccceeeeeeEEEecCCcc
Q 013436 347 KMSSNAS----CNLGFR-SYEWDYRWMDYPPQARDLKHPCDQSVATYK--------------GHSVLRTLIRCHFSPVYS 407 (443)
Q Consensus 347 ~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~s 407 (443)
....... ...... .+...+..+.++++...+....+..+..+. +|.. .. +....|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~-~~----v~~v~~~ 304 (330)
T 2hes_X 230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGV-YE----INVVKWL 304 (330)
T ss_dssp EECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTT-SC----EEEEEEC
T ss_pred CCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecccccccc-ce----EEEEEEe
Confidence 6422110 000000 122223344444443333333333333332 2221 01 2233456
Q ss_pred C--CccEEEEeeCCCeEEEEEccC
Q 013436 408 T--GQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 408 ~--d~~~l~tg~~dg~v~iwd~~~ 429 (443)
| ++++|++|+.||.|+|||+.+
T Consensus 305 ~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 305 ELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -----CCEEEEETTSEEEEEEC--
T ss_pred cCCCceEEEEecCCCcEEEEEecc
Confidence 6 688999999999999999864
No 19
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-38 Score=285.59 Aligned_cols=258 Identities=16% Similarity=0.153 Sum_probs=202.9
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC--CCeEEEEECCCeEEEE
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIV 196 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~~dg~i~iw 196 (443)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. .....+.+|..+|.+++|+|+ +++|++++.|++|++|
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4678999999999999999999999999999999975311 112346689999999999864 8999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC--CCEEEEEecCCeEEEEECCCCe--eeEEeeccCCCe
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDV 272 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v 272 (443)
|+.+++....... .+|...|.+++|+|+ +.+|++++.|+.|++||++++. ....+.+|...|
T Consensus 83 d~~~~~~~~~~~~--------------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v 148 (297)
T 2pm7_B 83 KEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148 (297)
T ss_dssp EBSSSCBCCCEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE
T ss_pred EcCCCceEEEEEe--------------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc
Confidence 9987643222111 136668999999997 8899999999999999998763 245677999999
Q ss_pred EEEEEeCC------------CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC---CEEEEEeCC
Q 013436 273 NTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---RYLISNGKD 337 (443)
Q Consensus 273 ~~i~~~~~------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d 337 (443)
.+++|+|. ++++|++|+.|+.|++||++...........+.+|...|.+++|+|++ .+|++++.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 99999853 257999999999999999983211122567888999999999999984 899999999
Q ss_pred CCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEE--eccceeeeeeEEEecCCccCCccEEEE
Q 013436 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY--KGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (443)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~d~~~l~t 415 (443)
++|+|||++...... ....+ ..|. .. +++.+|+|+|++|++
T Consensus 229 ~~v~iWd~~~~~~~~-------------------------------~~~~~~~~~~~--~~----v~~~~~s~~g~~las 271 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPW-------------------------------KKTLLKEEKFP--DV----LWRASWSLSGNVLAL 271 (297)
T ss_dssp SCEEEEEESSTTSCC-------------------------------EEEESSSSCCS--SC----EEEEEECSSSCCEEE
T ss_pred CcEEEEEeCCCCCcc-------------------------------ceeeeecccCC--Cc----EEEEEECCCCCEEEE
Confidence 999999997632100 01111 2232 12 234456779999999
Q ss_pred eeCCCeEEEEEcc
Q 013436 416 GSHDSCVYVYDLV 428 (443)
Q Consensus 416 g~~dg~v~iwd~~ 428 (443)
++.||.|++|+..
T Consensus 272 ~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 272 SGGDNKVTLWKEN 284 (297)
T ss_dssp EETTSCEEEEEEC
T ss_pred EcCCCcEEEEEEC
Confidence 9999999999986
No 20
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-38 Score=295.87 Aligned_cols=265 Identities=25% Similarity=0.416 Sum_probs=210.7
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecC---------------CccceEEEEEECCCCCeEEE
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK---------------SLRWTVTDTSLSPDQRHLVY 186 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~---------------~~~~~v~~i~~s~~~~~l~~ 186 (443)
+|.+.|.+++|+|||++||+|+ ++.++||++.++..+....... .+...|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 6899999999987655432111 12234999999999999999
Q ss_pred EECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee
Q 013436 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (443)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 266 (443)
++.|+.|++||+.+++...... +|...|.+++|+|++++|++++.|+.|++||++++++...+.
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~----------------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQ----------------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EcCCCeEEEEECCCCcEEEEEc----------------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence 9999999999999876543322 466799999999999999999999999999999998877764
Q ss_pred ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee-------cCCCCCeEEEEECCCCCEEEEEeCCCC
Q 013436 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-------MGHLEGITFIDSRGDGRYLISNGKDQA 339 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~dg~ 339 (443)
+...+.+++|+|.++++|++|+.|+.|++||++ .+..+..+ .+|...|.+++|+|++++|++++.|+.
T Consensus 205 -~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 205 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE----TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETT----TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred -cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC----CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 567899999996699999999999999999998 66666555 579999999999999999999999999
Q ss_pred EEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCC
Q 013436 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (443)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~d 419 (443)
|++||+++........ ..........+.+|...+ ..+ +|+|++.+|++|+.|
T Consensus 280 v~~wd~~~~~~~~~~~----------------------~~~~~~~~~~~~~h~~~v--~~~----~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 280 VKLWNLQNANNKSDSK----------------------TPNSGTCEVTYIGHKDFV--LSV----ATTQNDEYILSGSKD 331 (393)
T ss_dssp EEEEEC-------------------------------------CEEEEEECCSSCE--EEE----EECGGGCEEEEEETT
T ss_pred EEEEECCCCCCccccc----------------------CCCCCcceEEEecccCcE--EEE----EECCCCCEEEEEeCC
Confidence 9999998743221110 001134466777887433 233 356689999999999
Q ss_pred CeEEEEEccChhhhhHh
Q 013436 420 SCVYVYDLVSIQILFCR 436 (443)
Q Consensus 420 g~v~iwd~~~g~~~~~~ 436 (443)
|.|++||+.+++.+..+
T Consensus 332 ~~v~iwd~~~~~~~~~l 348 (393)
T 1erj_A 332 RGVLFWDKKSGNPLLML 348 (393)
T ss_dssp SEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCeEEEEE
Confidence 99999999998876544
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.1e-39 Score=296.84 Aligned_cols=259 Identities=20% Similarity=0.188 Sum_probs=202.7
Q ss_pred ccCCCCceEEEEECCCCCEEEEEEC------CCeEEEEECCCCeEEEEe-eecCCccceEEEEEECCCCCeEEEEECCCe
Q 013436 120 VDQTTSRAYVSQFSADGSLFVAGFQ------ASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~g~~------d~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~ 192 (443)
...|...|++++|||||++||+|+. |+.|++|+..++...... .....|...|.+++|+|++. +++++.||.
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 3579999999999999999999997 778999998876433221 12335777899999999985 567889999
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCe
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 272 (443)
|+|||+.+++......... .+|...|.+++|+|++++|++|+.|+.|++||+++++++..+..|...|
T Consensus 117 v~lWd~~~~~~~~~~~~~~------------~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v 184 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAK------------YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV 184 (357)
T ss_dssp EEEC--------CCCCEEE------------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred EEEeeccccceeEEEeecc------------CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 9999999886544433221 1477799999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee--cCCCCCeEEEEECCC-CCEEEEEeCCCCEEEEeCCCCC
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL--MGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
++++|++....++++++.|+.|++||++ .++++..+ ..|...+++++|+|+ +.+|++++.|+.|++||+++
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~----~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-- 258 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTR----KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-- 258 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTT----SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC--
T ss_pred EEEEEccCCCceeeeeccCCceEEEECC----CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC--
Confidence 9999985556789999999999999998 55555443 456778999999997 56889999999999999998
Q ss_pred CccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCc-cEEEEeeCCCeEEEEEcc
Q 013436 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~tg~~dg~v~iwd~~ 428 (443)
.+.+..+.+|...+. .+. |+|++ ++|++|+.||+|+|||+.
T Consensus 259 --------------------------------~~~~~~~~~~~~~v~--~l~----~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 259 --------------------------------PDSAQTSAVHSQNIT--GLA----YSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp --------------------------------GGGCEEECCCSSCEE--EEE----ECSSSSCCEEEEETTSCEEEECTT
T ss_pred --------------------------------CcEeEEEeccceeEE--EEE----EcCCCCCEEEEEeCCCEEEEEECC
Confidence 445677788875433 334 45565 689999999999999999
Q ss_pred ChhhhhH
Q 013436 429 SIQILFC 435 (443)
Q Consensus 429 ~g~~~~~ 435 (443)
+++++..
T Consensus 301 ~~~~~~~ 307 (357)
T 4g56_B 301 FSEVFRD 307 (357)
T ss_dssp SCEEEEE
T ss_pred CCcEeEE
Confidence 9987654
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.9e-38 Score=291.54 Aligned_cols=264 Identities=21% Similarity=0.310 Sum_probs=221.7
Q ss_pred ccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeE---EEEeeecCCccceEEEEEEC
Q 013436 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK---IQKDILAKSLRWTVTDTSLS 178 (443)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~i~~s 178 (443)
.+....+|...+.+....+..|...|.+++|+|+|.+|++|+.|+.+++|++..... .........|...|.+++|+
T Consensus 84 ~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 163 (354)
T 2pbi_B 84 QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT 163 (354)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC
T ss_pred CCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe
Confidence 445566777777777778889999999999999999999999999999999864310 01112234688889999999
Q ss_pred CCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC--CCCEEEEEecCCeEEEEEC
Q 013436 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDL 256 (443)
Q Consensus 179 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~dg~i~iwd~ 256 (443)
|++..|++++.|++|++||+.+++...... +|...|.+++|+| ++.+|++|+.||.|++||+
T Consensus 164 ~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~ 227 (354)
T 2pbi_B 164 NSDMQILTASGDGTCALWDVESGQLLQSFH----------------GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227 (354)
T ss_dssp SSSSEEEEEETTSEEEEEETTTCCEEEEEE----------------CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEc----------------CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 999999999999999999999887654332 4666899999988 5789999999999999999
Q ss_pred CCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC--CCCeEEEEECCCCCEEEEE
Q 013436 257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~ 334 (443)
++++++..+..|...|++++|+ +++++|++|+.|+.|++||++ ....+..+..+ ...+.+++|+|++++|+++
T Consensus 228 ~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~v~lwd~~----~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 302 (354)
T 2pbi_B 228 RSGQCVQAFETHESDVNSVRYY-PSGDAFASGSDDATCRLYDLR----ADREVAIYSKESIIFGASSVDFSLSGRLLFAG 302 (354)
T ss_dssp TTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEecCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEECC----CCcEEEEEcCCCcccceeEEEEeCCCCEEEEE
Confidence 9999999999999999999998 788999999999999999998 66666555433 4578999999999999999
Q ss_pred eCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEE
Q 013436 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (443)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 414 (443)
+.|+.|++||+.+ +..+..+.+|...+..+ .|+|||++|+
T Consensus 303 ~~d~~i~vwd~~~----------------------------------~~~~~~l~~h~~~v~~l------~~spdg~~l~ 342 (354)
T 2pbi_B 303 YNDYTINVWDVLK----------------------------------GSRVSILFGHENRVSTL------RVSPDGTAFC 342 (354)
T ss_dssp ETTSCEEEEETTT----------------------------------CSEEEEECCCSSCEEEE------EECTTSSCEE
T ss_pred ECCCcEEEEECCC----------------------------------CceEEEEECCCCcEEEE------EECCCCCEEE
Confidence 9999999999987 45677888888543332 4667999999
Q ss_pred EeeCCCeEEEEE
Q 013436 415 TGSHDSCVYVYD 426 (443)
Q Consensus 415 tg~~dg~v~iwd 426 (443)
+|+.||.|++|+
T Consensus 343 sgs~D~~v~vW~ 354 (354)
T 2pbi_B 343 SGSWDHTLRVWA 354 (354)
T ss_dssp EEETTSEEEEEC
T ss_pred EEcCCCCEEecC
Confidence 999999999996
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3e-38 Score=312.59 Aligned_cols=300 Identities=17% Similarity=0.227 Sum_probs=227.7
Q ss_pred cceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE
Q 013436 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 184 (443)
...++..........+.+|...|++++|+|+|++||+|+.|++|+|||+.++..... .....|..+|.+++|+|+++.|
T Consensus 40 ~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~-~~~~~~~~~v~~v~fs~dg~~l 118 (611)
T 1nr0_A 40 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESKRI 118 (611)
T ss_dssp EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSCEE
T ss_pred EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee-EeecccCCceEEEEECCCCCEE
Confidence 344555555566778899999999999999999999999999999999975432211 2345678899999999999999
Q ss_pred EEEECC----CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecCCeEEEEECCCC
Q 013436 185 VYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN 259 (443)
Q Consensus 185 ~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~ 259 (443)
++++.+ +.|++||. +..... ..+|...|.+++|+|++. .|++|+.|+.|++||..++
T Consensus 119 ~~~~~~~~~~~~v~~wd~--~~~~~~----------------l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~ 180 (611)
T 1nr0_A 119 AAVGEGRERFGHVFLFDT--GTSNGN----------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 180 (611)
T ss_dssp EEEECCSSCSEEEEETTT--CCBCBC----------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred EEEECCCCceeEEEEeeC--CCCcce----------------ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence 998865 36777774 332211 125777999999999987 5999999999999999999
Q ss_pred eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec-------CCCCCeEEEEECCCCCEEE
Q 013436 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLI 332 (443)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~ 332 (443)
++...+.+|...|.+++|+ +++++|++++.|+.|++||+. .++.+..+. +|...|.+++|+|++++|+
T Consensus 181 ~~~~~l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~----~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 181 KFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp EEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred eEeeeeccccCceEEEEEC-CCCCEEEEEECCCcEEEEECC----CCcEeeeeccccccccccCCCEEEEEECCCCCEEE
Confidence 9999999999999999998 789999999999999999998 777777763 7999999999999999999
Q ss_pred EEeCCCCEEEEeCCCCCCccccCCccccc------Ccccccc-cCCCC--CCcccCCCCeeEEEEeccceeeeeeEEEec
Q 013436 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSY------EWDYRWM-DYPPQ--ARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (443)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (443)
+++.|++|++||+++.+............ .++-..+ ....+ .+............+.+|...+. +
T Consensus 256 s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~------~ 329 (611)
T 1nr0_A 256 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT------A 329 (611)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEE------E
T ss_pred EEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEE------E
Confidence 99999999999999876544332211000 0000000 00000 00111122345566677774333 2
Q ss_pred CCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 404 PVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 404 ~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
.+|+|||++|++++.||.|++||+.+++...
T Consensus 330 l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 330 LSSSADGKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 3466799999999999999999999887543
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-37 Score=281.32 Aligned_cols=264 Identities=17% Similarity=0.207 Sum_probs=217.1
Q ss_pred cccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC
Q 013436 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (443)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 182 (443)
+....+|+.........+..|..+|.+++|+|++++|++|+.|++|++||+.+++.+.. ..+|...|.+++|+|+++
T Consensus 34 dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~ 110 (304)
T 2ynn_A 34 SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD---FEAHPDYIRSIAVHPTKP 110 (304)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE---EECCSSCEEEEEECSSSS
T ss_pred CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE---EeCCCCcEEEEEEcCCCC
Confidence 34455666666666778889999999999999999999999999999999999876654 457888999999999999
Q ss_pred eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCee
Q 013436 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL 261 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 261 (443)
+|++++.|+.|++||+.++..... . ..+|...|.+++|+| ++..|++|+.|+.|++||++++..
T Consensus 111 ~l~sgs~D~~v~lWd~~~~~~~~~--~-------------~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~ 175 (304)
T 2ynn_A 111 YVLSGSDDLTVKLWNWENNWALEQ--T-------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (304)
T ss_dssp EEEEEETTSCEEEEEGGGTTEEEE--E-------------ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC
T ss_pred EEEEECCCCeEEEEECCCCcchhh--h-------------hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 999999999999999987632211 0 124677899999999 678999999999999999988876
Q ss_pred eEEee-ccCCCeEEEEEeC-CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCC
Q 013436 262 SLRIL-AHTSDVNTVCFGD-ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (443)
Q Consensus 262 ~~~~~-~~~~~v~~i~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 339 (443)
...+. .|...+..+.|+| +++.+|++|+.|+.|++||++ .++++..+.+|...|.+++|+|++++|++++.||+
T Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251 (304)
T ss_dssp SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT----TTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC----CCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCe
Confidence 66655 5667899999985 367899999999999999998 88999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCcc--EEEEee
Q 013436 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK--YIYTGS 417 (443)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~--~l~tg~ 417 (443)
|++||+++ .+.+..+..|..... .+.+ +|++. ++++|+
T Consensus 252 i~iWd~~~----------------------------------~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~asg~ 291 (304)
T 2ynn_A 252 LKIWNSST----------------------------------YKVEKTLNVGLERSW--CIAT----HPTGRKNYIASGF 291 (304)
T ss_dssp EEEEETTT----------------------------------CCEEEEECCSSSSEE--EEEE----CTTCGGGCEEEEE
T ss_pred EEEEECCC----------------------------------CceeeeccCCCccEE--EEEE----CCCCCceEEEEec
Confidence 99999988 456777777764332 2333 34453 577776
Q ss_pred CCCeEEEEEccC
Q 013436 418 HDSCVYVYDLVS 429 (443)
Q Consensus 418 ~dg~v~iwd~~~ 429 (443)
.|| +.+|++.+
T Consensus 292 ~~g-~~~~~~~~ 302 (304)
T 2ynn_A 292 DNG-FTVLSLGN 302 (304)
T ss_dssp TTE-EEEEECC-
T ss_pred CCc-eEEEEecc
Confidence 555 77888754
No 25
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2e-37 Score=284.34 Aligned_cols=289 Identities=19% Similarity=0.206 Sum_probs=220.9
Q ss_pred ccccCCCCceEEEEECCC-CCEEEEEECCCeEEEEECCCCeEE--EEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~-~~~l~~g~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
.+|.||.+.|++++|+|+ +++||+|+.|++|+|||+.++... .......+|...|.+++|+|++++|++++.|+.|+
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence 358899999999999998 689999999999999999765321 22234578889999999999999999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeee-EEeeccCCCeE
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-LRILAHTSDVN 273 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~ 273 (443)
+|+............ +...+..+.+++++..|++++.|+.+++||+...... .....|...+.
T Consensus 112 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~ 175 (340)
T 4aow_A 112 LWDLTTGTTTRRFVG----------------HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 175 (340)
T ss_dssp EEETTTTEEEEEEEC----------------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEE
T ss_pred EEeecccceeeeecC----------------CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCccc
Confidence 999988765433321 2336888899999999999999999999999776543 34557899999
Q ss_pred EEEEeCCC-CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcc
Q 013436 274 TVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (443)
Q Consensus 274 ~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (443)
.++|++.. ..++++++.|+.|++||++ ..+.+..+.+|...|++++|+|++++|++++.|+.|++||+++.+.+.
T Consensus 176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 251 (340)
T 4aow_A 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLA----NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY 251 (340)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE
T ss_pred ceEEccCCCCcEEEEEcCCCEEEEEECC----CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee
Confidence 99997443 4578899999999999998 888999999999999999999999999999999999999999876554
Q ss_pred ccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccc-----------eee---eeeEEEecCCccCCccEEEEeeC
Q 013436 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-----------VLR---TLIRCHFSPVYSTGQKYIYTGSH 418 (443)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~s~d~~~l~tg~~ 418 (443)
..... ..+..+.+.++...+....+..+..+.... ... .....+.+.+|+|||++|++|+.
T Consensus 252 ~~~~~-----~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 326 (340)
T 4aow_A 252 TLDGG-----DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT 326 (340)
T ss_dssp EEECS-----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET
T ss_pred eecCC-----ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence 43221 123344455555444443333333332111 000 00011233457779999999999
Q ss_pred CCeEEEEEccChh
Q 013436 419 DSCVYVYDLVSIQ 431 (443)
Q Consensus 419 dg~v~iwd~~~g~ 431 (443)
||.|+|||+.+|+
T Consensus 327 Dg~v~iW~~~tGt 339 (340)
T 4aow_A 327 DNLVRVWQVTIGT 339 (340)
T ss_dssp TSCEEEEEEEC--
T ss_pred CCEEEEEeCCCcC
Confidence 9999999999986
No 26
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.7e-39 Score=292.84 Aligned_cols=258 Identities=19% Similarity=0.145 Sum_probs=199.0
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC--CCCeEEEEECCCeEEEE
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~iw 196 (443)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ......+|..+|.+++|+| ++++|++++.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 45789999999999999999999999999999999887432 2234568999999999986 48999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC--CCEEEEEecCCeEEEEECCCCee---eEEeeccCCC
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKL---SLRILAHTSD 271 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~ 271 (443)
|+.++........ .+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ...+.+|...
T Consensus 87 d~~~~~~~~~~~~--------------~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 87 REENGTWEKSHEH--------------AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp CCSSSCCCEEEEE--------------CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred ECCCCcceEEEEc--------------cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence 9987643222111 146678999999997 78999999999999999987632 3445688999
Q ss_pred eEEEEEeCCC----------------CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC----CEE
Q 013436 272 VNTVCFGDES----------------GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----RYL 331 (443)
Q Consensus 272 v~~i~~~~~~----------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l 331 (443)
|.+++|+|.. +++|++|+.|+.|++||++... ...++..+.+|...|.+++|+|++ .+|
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 9999998431 4689999999999999996210 124677888999999999999986 899
Q ss_pred EEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCcc
Q 013436 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (443)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 411 (443)
++++.|++|+|||++...... .....+..|.. . +++.+|+|+++
T Consensus 232 as~s~D~~v~iw~~~~~~~~~------------------------------~~~~~~~~~~~--~----v~~v~~sp~g~ 275 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASSNT------------------------------WSPKLLHKFND--V----VWHVSWSITAN 275 (316)
T ss_dssp EEEETTCEEEEEECSSTTCCC------------------------------CBCCEEEECSS--C----EEEEEECTTTC
T ss_pred EEEcCCCeEEEEEccCccccc------------------------------hhhhhhhcCCC--c----EEEEEEcCCCC
Confidence 999999999999987632100 01122344442 2 23445677999
Q ss_pred EEEEeeCCCeEEEEEcc
Q 013436 412 YIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 412 ~l~tg~~dg~v~iwd~~ 428 (443)
+|++|+.||.|++|+..
T Consensus 276 ~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 276 ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEEC
Confidence 99999999999999986
No 27
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4e-38 Score=299.19 Aligned_cols=298 Identities=13% Similarity=0.134 Sum_probs=209.0
Q ss_pred ccccCCCCceEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC-CCCeEEEEECCCeEEE
Q 013436 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHI 195 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~i 195 (443)
....+|...|+|++|+| ++++||+|+.||.|+|||+.++... ......+|...|++|+|+| ++.+|++++.||+|++
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34567899999999999 5679999999999999999876433 2234568999999999998 6889999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 275 (443)
||++++........ ..+...+.+++|+|++.+|++|+.||.|++||++. +.+..+.+|...|+++
T Consensus 192 wd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 192 QDFKGNILRVFASS--------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHV 256 (435)
T ss_dssp EETTSCEEEEEECC--------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEE
T ss_pred eeccCCceeEEecc--------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEee
Confidence 99987654322211 11233678899999999999999999999999865 4567788999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccC
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (443)
+|+|....+|++|+.|+.|++||++.... ...+....+|...|++++|+|++++|++++.||.|+|||+++........
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRG-KASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCS-SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred eecCCCceEEEEecCcceeeEEecccccc-cceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 99966667899999999999999984321 12233446799999999999999999999999999999999876544332
Q ss_pred Ccccc---------cCc----ccccccCCCCCCcccC--CCCeeEEEEeccceeeeee------EEEecC-CccCCccEE
Q 013436 356 LGFRS---------YEW----DYRWMDYPPQARDLKH--PCDQSVATYKGHSVLRTLI------RCHFSP-VYSTGQKYI 413 (443)
Q Consensus 356 ~~~~~---------~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~-~~s~d~~~l 413 (443)
..... ..| .+-.....++...+.. ..+..+..+..+....... ..+.+. .|+|+|++|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 336 PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCE
T ss_pred cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEE
Confidence 11000 000 0111122222222111 1222344443332110000 000111 367799999
Q ss_pred EEeeCCCeEEEEEccChhhh
Q 013436 414 YTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 414 ~tg~~dg~v~iwd~~~g~~~ 433 (443)
++|+ |+.|+|||+.+|+..
T Consensus 416 asg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 416 ASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEC-SSEEEECCCC-----
T ss_pred EEEc-CCcEEEEECCcCeee
Confidence 9876 889999999998753
No 28
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-37 Score=284.89 Aligned_cols=285 Identities=14% Similarity=0.150 Sum_probs=229.0
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
...+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+.. ...|...|.+++|+|++++|++++.||.|++|
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT---LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh---hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 456789999999999999999999999999999999999866653 55788899999999999999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-----CeEEEEECCCCe-----------
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANK----------- 260 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~----------- 260 (443)
|+.+++...... +...|.+++|+|+++++++++.+ |.|++||+....
T Consensus 102 d~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 102 DVSNGQCVATWK-----------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp ETTTCCEEEEEE-----------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred ECCCCcEEEEee-----------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 999887655443 22379999999999999999998 999999987653
Q ss_pred eeEEeeccCC--CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCC-CceeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q 013436 261 LSLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (443)
Q Consensus 261 ~~~~~~~~~~--~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 337 (443)
....+..|.. .+.+++|+ +++++|++++.||.|++||++ . ...+..+..|...|.+++|+|++++|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVS----NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp CSEEEECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETT----TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeeeccCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECC----CCcEeEEEEecCCCceeEEEECCCCCEEEEecCC
Confidence 3344555666 89999998 788999999999999999998 5 67888899999999999999999999999999
Q ss_pred CCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccC--------------------------CCCeeEEEEecc
Q 013436 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH--------------------------PCDQSVATYKGH 391 (443)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~ 391 (443)
+.|++||+++.+....... ...+..+.+.++...+.. ...+.+..+.+|
T Consensus 240 ~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 240 TNSFLVDVSTLQVLKKYET-----DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp SEEEEEETTTCCEEEEEEC-----SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred ceEEEEECCCCceeeeecC-----CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence 9999999998765544331 122233334444333322 223445566666
Q ss_pred ceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhH
Q 013436 392 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 392 ~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~ 437 (443)
...+. +..|+|++++|++|+.||.|++|++.++.....++
T Consensus 315 ~~~v~------~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 354 (369)
T 3zwl_B 315 FGPLN------TVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYD 354 (369)
T ss_dssp SSCEE------EEEECTTSSEEEEEETTSEEEEEEECHHHHTCCCH
T ss_pred cCcEE------EEEECCCCCEEEEEcCCCeEEEEECccccchhHHH
Confidence 64322 23466799999999999999999999877655443
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.2e-37 Score=310.17 Aligned_cols=286 Identities=20% Similarity=0.220 Sum_probs=221.0
Q ss_pred ccccCCCCceEEEEECCCC-CEEEEEECCCeEEEEECCCCeEE--EEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 118 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
..+.+|.+.|++++|+|++ ++|++|+.|++|+||++.+.... .......+|...|.+++|+|++++|++|+.|+.|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 3578999999999999875 79999999999999999764211 11224567888999999999999999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEe---eccCCC
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSD 271 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~ 271 (443)
+||+.++....... +|...|.+++|+|++++|++|+.|+.|++||+......... .+|...
T Consensus 456 vwd~~~~~~~~~~~----------------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 456 LWDLAAGVSTRRFV----------------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519 (694)
T ss_dssp EEETTTTEEEEEEE----------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred EEECCCCcceeEEe----------------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence 99999886543321 47779999999999999999999999999998765433322 368889
Q ss_pred eEEEEEeCCC-CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 272 VNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 272 v~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
|.+++|+|.. ...+++++.|+.|++||++ ..+....+.+|...|++++|+|++++|++++.||.|++||+++.+.
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~----~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLS----NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence 9999998443 3689999999999999998 7788889999999999999999999999999999999999998766
Q ss_pred ccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccce-----------ee-------------eeeEEEecCCc
Q 013436 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-----------LR-------------TLIRCHFSPVY 406 (443)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-------------~~~~~~~~~~~ 406 (443)
+...... ..+..+.++++...+.......+..+.-... .. .....+.+..|
T Consensus 596 ~~~~~~~-----~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 670 (694)
T 3dm0_A 596 LYSLEAN-----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670 (694)
T ss_dssp EECCBCS-----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE
T ss_pred EEEecCC-----CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE
Confidence 5443221 1244556666665554443333333322110 00 00001234567
Q ss_pred cCCccEEEEeeCCCeEEEEEcc
Q 013436 407 STGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 407 s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
||||++|++|+.||.|+|||+.
T Consensus 671 spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 671 SADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCCEEEEEcCCCeEEEEecc
Confidence 8899999999999999999985
No 30
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.6e-37 Score=283.19 Aligned_cols=304 Identities=12% Similarity=0.052 Sum_probs=218.4
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEE-EEeeecCCccceEEEEEECC--CCCeEEEEECCCeEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVH 194 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~ 194 (443)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.++... ........|...|++++|+| ++++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456799999999999999999999999999999999875321 22234567888999999999 699999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC--CCEEEEEecCCeEEEEECCCCeeeEEee------
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRIL------ 266 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~------ 266 (443)
+||+.++........... .....+|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNK-------LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp EEEECTTSCTTSSCSEEE-------EEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred EEecCCCcccccccCcce-------eeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 999988753211100000 0001246668999999999 9999999999999999998876544332
Q ss_pred -------ccCCCeEEEEEeCC--CCCEEEEeeCCCeEEEEecccCCCCCc--eeeeecCCCCCeEEEEECCCC----CEE
Q 013436 267 -------AHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEGITFIDSRGDG----RYL 331 (443)
Q Consensus 267 -------~~~~~v~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l 331 (443)
.|...+.+++|+|. ++.++++++.|+.+.+|+.. .+. .+..+.+|...|++++|+|++ ++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l 233 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK----DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI 233 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT----TSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC----CCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence 57789999999843 48899999999999888876 444 377788999999999999998 899
Q ss_pred EEEeCCCCEEEEeCCCCCCccccCCcccccCccc--ccccCCCC----------CCcccCCCCeeEEEEeccceeeeeeE
Q 013436 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY--RWMDYPPQ----------ARDLKHPCDQSVATYKGHSVLRTLIR 399 (443)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (443)
++++.||.|++||++................... ........ ...........+..+.+|...+. .
T Consensus 234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~ 311 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW--S 311 (351)
T ss_dssp EEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE--E
T ss_pred EEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE--E
Confidence 9999999999999987543322211100000000 00000000 00001112355677778874433 3
Q ss_pred EEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhHH
Q 013436 400 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQS 438 (443)
Q Consensus 400 ~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~~ 438 (443)
+ .|+|++++|++|+.||.|++||+.+++.+.+++.
T Consensus 312 ~----~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 312 V----SWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp E----EECSSSCCEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred E----EEcCCCCEEEEecCCCcEEEEecCcCcchhheee
Confidence 3 4566899999999999999999999987776654
No 31
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-36 Score=284.07 Aligned_cols=291 Identities=13% Similarity=0.150 Sum_probs=219.7
Q ss_pred CCCccccCCCCceEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC-CCCeEEEEECCCe
Q 013436 115 NGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPI 192 (443)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~ 192 (443)
.....+.+|...|++++|+|++ ++|++|+.||.|+|||+.++..... ....+|...|.+++|+| ++++|++++.|+.
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 3345678999999999999999 9999999999999999998755443 23456888999999999 6899999999999
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCe
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 272 (443)
|++||+.+........ ..+|...|.+++|+|++++|++|+.|+.|++||+ +++.+..+..|...|
T Consensus 143 i~iwd~~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v 207 (383)
T 3ei3_B 143 TTLRDFSGSVIQVFAK--------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV 207 (383)
T ss_dssp EEEEETTSCEEEEEEC--------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE
T ss_pred EEEEECCCCceEEEec--------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE
Confidence 9999998643322211 1124458999999999999999999999999999 577788899999999
Q ss_pred EEEEEeCCCCC-EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC-CCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 273 NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 273 ~~i~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
.+++|+ +++. +|++++.|+.|++||++........+..+ +|...|++++|+| ++++|++++.|+.|++||+++...
T Consensus 208 ~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 208 THAEFN-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp EEEEEC-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred EEEEEC-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 999998 5565 99999999999999998543335666666 6999999999999 999999999999999999998776
Q ss_pred ccccCCccc---c------cC----cccccccCCCCCCcccCCC-----------CeeEEEEeccceeeeeeEEEecCCc
Q 013436 351 NASCNLGFR---S------YE----WDYRWMDYPPQARDLKHPC-----------DQSVATYKGHSVLRTLIRCHFSPVY 406 (443)
Q Consensus 351 ~~~~~~~~~---~------~~----~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (443)
......... . .. ..+..+.+.++++. .... ++.+..+.+|.....+.. .+|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~----~~~ 360 (383)
T 3ei3_B 286 PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISL----NKF 360 (383)
T ss_dssp CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCE----EEE
T ss_pred ccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEE----EEE
Confidence 544321100 0 00 11112334444433 2222 334445544321111111 146
Q ss_pred cCCccEEEEeeCCCeEEEEEccC
Q 013436 407 STGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 407 s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
+|++++|++|+ ||.|+|||+.+
T Consensus 361 s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 361 SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCccEEEEec-CCcEEEEecCC
Confidence 67999999997 99999999864
No 32
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=282.37 Aligned_cols=263 Identities=17% Similarity=0.144 Sum_probs=210.4
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC--CCeEEEEECCCeE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIV 193 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~~dg~i 193 (443)
....+.+|.+.|++++|+|++++||+|+.||.|+|||+..+.. ........|...|++++|+|+ +++|++++.||.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3456889999999999999999999999999999999985422 233346678899999999987 8999999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC--CCEEEEEecCCeEEEEECCCCe--eeEEeeccC
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHT 269 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~ 269 (443)
++||+.+++........ +|...|.+++|+|+ +.+|++++.||.|++||++++. ....+..|.
T Consensus 82 ~iwd~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHA--------------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp EEEEEETTEEEEEEEEC--------------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred EEEEcCCCceeEeeeec--------------CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 99999987632222211 35568999999999 9999999999999999998873 445667899
Q ss_pred CCeEEEEEeCC------------CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC---CCEEEEE
Q 013436 270 SDVNTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISN 334 (443)
Q Consensus 270 ~~v~~i~~~~~------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~ 334 (443)
..|.+++|+|. ++.+|++++.|+.|++||++...........+.+|...|.+++|+|+ +++|+++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 99999999853 68999999999999999998443233466778899999999999999 8999999
Q ss_pred eCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEe--ccceeeeeeEEEecCCccCCccE
Q 013436 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK--GHSVLRTLIRCHFSPVYSTGQKY 412 (443)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~d~~~ 412 (443)
+.||.|++||++...... ....+. .|.. .+ +++.|+|++++
T Consensus 228 ~~dg~i~iwd~~~~~~~~-------------------------------~~~~~~~~~~~~--~v----~~~~~s~~g~~ 270 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQGPW-------------------------------KKTLLKEEKFPD--VL----WRASWSLSGNV 270 (379)
T ss_dssp ETTSCEEEEEESSTTSCC-------------------------------EEEESSSSCCSS--CE----EEEEECSSSCC
T ss_pred eCCCEEEEEeCCCCCccc-------------------------------eeeeeccccCCC--cE----EEEEEcCCCCE
Confidence 999999999998743210 111111 1322 22 33346679999
Q ss_pred EEEeeCCCeEEEEEccCh
Q 013436 413 IYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 413 l~tg~~dg~v~iwd~~~g 430 (443)
|++++.||.|++||+..+
T Consensus 271 l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 271 LALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEEESSSSEEEEEEEET
T ss_pred EEEecCCCcEEEEeCCCC
Confidence 999999999999999854
No 33
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-35 Score=269.43 Aligned_cols=262 Identities=20% Similarity=0.284 Sum_probs=218.7
Q ss_pred cccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC
Q 013436 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (443)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 182 (443)
+....++.....+....+.+|...|.+++|+|++++|++|+.|+.|++||+.++..+.. ...|...|.+++|+|+++
T Consensus 44 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~ 120 (312)
T 4ery_A 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT---LKGHSNYVFCCNFNPQSN 120 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---EECCSSCEEEEEECSSSS
T ss_pred CCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE---EcCCCCCEEEEEEcCCCC
Confidence 34445666656666677889999999999999999999999999999999999876654 456788899999999999
Q ss_pred eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeee
Q 013436 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 262 (443)
+|++++.|+.|++||+.+++...... .|..+|.+++|+|++++|++++.||.|++||+++++.+
T Consensus 121 ~l~s~~~d~~i~iwd~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 184 (312)
T 4ery_A 121 LIVSGSFDESVRIWDVKTGKCLKTLP----------------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC----------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEEEeCCCcEEEEECCCCEEEEEec----------------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 99999999999999999876543322 35558999999999999999999999999999999877
Q ss_pred EEee-ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEE---EEECCCCCEEEEEeCCC
Q 013436 263 LRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF---IDSRGDGRYLISNGKDQ 338 (443)
Q Consensus 263 ~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~l~s~~~dg 338 (443)
..+. .+...+..++|+ +++++|++++.|+.|++||++ .++.+..+.+|...+.. ....+++.+|++++.||
T Consensus 185 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 259 (312)
T 4ery_A 185 KTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259 (312)
T ss_dssp EEECCSSCCCEEEEEEC-TTSSEEEEEETTTEEEEEETT----TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTS
T ss_pred eEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECC----CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCC
Confidence 7664 566789999997 889999999999999999998 78888888888765332 23346789999999999
Q ss_pred CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee-
Q 013436 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS- 417 (443)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~- 417 (443)
.|++||+++ .+.+..+.+|... +..+. |+|++.+|++++
T Consensus 260 ~i~vwd~~~----------------------------------~~~~~~~~~h~~~--v~~~~----~~p~~~~l~s~~~ 299 (312)
T 4ery_A 260 LVYIWNLQT----------------------------------KEIVQKLQGHTDV--VISTA----CHPTENIIASAAL 299 (312)
T ss_dssp CEEEEETTT----------------------------------CCEEEEECCCSSC--EEEEE----ECSSSSEEEEEEC
T ss_pred EEEEEECCC----------------------------------chhhhhhhccCCc--EEEEe----ecCcCCceEEEEc
Confidence 999999988 5667888888743 33333 556899999987
Q ss_pred -CCCeEEEEEcc
Q 013436 418 -HDSCVYVYDLV 428 (443)
Q Consensus 418 -~dg~v~iwd~~ 428 (443)
.||.|++|+..
T Consensus 300 ~~d~~i~~W~~d 311 (312)
T 4ery_A 300 ENDKTIKLWKSD 311 (312)
T ss_dssp TTTCCEEEEECC
T ss_pred cCCccEEEecCC
Confidence 69999999864
No 34
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=284.00 Aligned_cols=307 Identities=15% Similarity=0.178 Sum_probs=223.9
Q ss_pred ccceeecccccCCCccccCCCCceEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEee----------ecCCccceE
Q 013436 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDI----------LAKSLRWTV 172 (443)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~v 172 (443)
....++..-..+....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++....... ....|...|
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred CcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence 3333444444556667788999999999999 99999999999999999998864322211 113588899
Q ss_pred EEEEECC-CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC---CCEEEEEecC
Q 013436 173 TDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSD 248 (443)
Q Consensus 173 ~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~~~~d 248 (443)
.+++|+| ++.+|++++.||.|++||+.+++...... +...+.++.|+|. +.++++++.+
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-----------------FEETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-----------------CSSCEEEEEECSSCSSCCEEEEEESS
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-----------------CCCceeeeEeecCCCCCcEEEEEcCC
Confidence 9999999 77899999999999999999887655443 2227889999984 4599999999
Q ss_pred CeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee---------------c
Q 013436 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---------------M 313 (443)
Q Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------~ 313 (443)
|.|++||+++++.+..+..|...|.+++|+|....++++++.||.|++||++... .++..+ .
T Consensus 166 ~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 4a11_B 166 PKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS---GCLITLDQHNGKKSQAVESANT 242 (408)
T ss_dssp SSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS---CCSEECCTTTTCSCCCTTTSSC
T ss_pred CeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC---cccccccccccccceeeccccc
Confidence 9999999999999999999999999999984444479999999999999998322 122222 5
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccC-cccccccC-C-----------CCCCcccCC
Q 013436 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE-WDYRWMDY-P-----------PQARDLKHP 380 (443)
Q Consensus 314 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-----------~~~~~~~~~ 380 (443)
.|...|.+++|+|++++|++++.||.|++||+++.+............. ........ . .........
T Consensus 243 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 322 (408)
T 4a11_B 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY 322 (408)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETT
T ss_pred cccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECc
Confidence 7889999999999999999999999999999998765433221110000 00000000 0 001111223
Q ss_pred CCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
..+.+..+.+|...+. .+ +|+|++++|++|+.||.|++||+.+++.+...
T Consensus 323 ~~~~~~~~~~~~~~v~--~~----~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 323 SGEQITMLKGHYKTVD--CC----VFQSNFQELYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp TCCEEEEECCCSSCEE--EE----EEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred CCcceeeeccCCCeEE--EE----EEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence 4566777777774333 23 46668999999999999999999999877543
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.6e-36 Score=272.99 Aligned_cols=255 Identities=16% Similarity=0.192 Sum_probs=212.2
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEee--ecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
....+|...|.+++|+|++++|++++ ||.|++||+.++....... ....|...|.+++|+|++++|++++.|+.|++
T Consensus 45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 34458999999999999999999998 9999999998764332222 22367889999999999999999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 275 (443)
||+.+++........ +|...|.+++|+|++++|++++.||.|++||+++++.+..+..|...|.++
T Consensus 124 ~d~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 189 (337)
T 1gxr_A 124 WDLAAPTPRIKAELT--------------SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189 (337)
T ss_dssp EECCCC--EEEEEEE--------------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EECCCCCcceeeecc--------------cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEE
Confidence 999987633222211 245589999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccC
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (443)
+|+ +++++|++++.|+.|++||++ .++.+..+. +...+.+++|+|++++|++++.|+.|++||+++..
T Consensus 190 ~~~-~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------ 257 (337)
T 1gxr_A 190 DIS-NDGTKLWTGGLDNTVRSWDLR----EGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------ 257 (337)
T ss_dssp EEC-TTSSEEEEEETTSEEEEEETT----TTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------
T ss_pred EEC-CCCCEEEEEecCCcEEEEECC----CCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------
Confidence 998 788999999999999999998 667766654 77899999999999999999999999999998732
Q ss_pred CcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
...+..|... +..+ .|+|++++|++++.||.|++||+.+++.+.
T Consensus 258 -----------------------------~~~~~~~~~~--v~~~----~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 258 -----------------------------KYQLHLHESC--VLSL----KFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp -----------------------------EEEECCCSSC--EEEE----EECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred -----------------------------eEEEcCCccc--eeEE----EECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence 3345556533 2233 356689999999999999999999887663
No 36
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-36 Score=300.52 Aligned_cols=251 Identities=16% Similarity=0.183 Sum_probs=205.2
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 201 (443)
.+.+.+.+++|+|||++||+++ ++.|+||++.++.... ...+|...|++++|+|+|++||+|+.|++|+|||+.++
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~ 91 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 91 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence 3467788999999999999997 5799999998764433 45688889999999999999999999999999999765
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC----CeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
+........ +|..+|.+++|+|+++.|++++.+ +.|++|| .++....+.+|...|++++|
T Consensus 92 ~~~~~~~~~--------------~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f 155 (611)
T 1nr0_A 92 THILKTTIP--------------VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDF 155 (611)
T ss_dssp TCCEEEEEE--------------CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEE
T ss_pred cceeeEeec--------------ccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEE
Confidence 432211111 356689999999999999998865 4788887 45566778899999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCc
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (443)
+|.....|++|+.|++|++||.. ..+.+..+.+|...|.+++|+|++++|++++.|++|++||+.+.+
T Consensus 156 ~p~~~~~l~s~s~D~~v~lwd~~----~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~-------- 223 (611)
T 1nr0_A 156 KPSRPFRIISGSDDNTVAIFEGP----PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT-------- 223 (611)
T ss_dssp CSSSSCEEEEEETTSCEEEEETT----TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------
T ss_pred CCCCCeEEEEEeCCCeEEEEECC----CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc--------
Confidence 84444579999999999999987 778888999999999999999999999999999999999998733
Q ss_pred ccccCcccccccCCCCCCcccCCCCeeEEEEe-------ccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-------GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
.+..+. +|... + ++.+|+|||++|++|+.|++|++||+.++
T Consensus 224 --------------------------~~~~~~~~~~~~~~h~~~--V----~~v~~spdg~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 224 --------------------------KTGVFEDDSLKNVAHSGS--V----FGLTWSPDGTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp --------------------------EEEECBCTTSSSCSSSSC--E----EEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred --------------------------EeeeeccccccccccCCC--E----EEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 333332 46532 2 23346679999999999999999999998
Q ss_pred hhhhHh
Q 013436 431 QILFCR 436 (443)
Q Consensus 431 ~~~~~~ 436 (443)
+.+..+
T Consensus 272 ~~~~~~ 277 (611)
T 1nr0_A 272 KVEKTI 277 (611)
T ss_dssp EEEEEE
T ss_pred ceeeee
Confidence 876543
No 37
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-35 Score=292.57 Aligned_cols=244 Identities=23% Similarity=0.361 Sum_probs=209.8
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeE
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 193 (443)
......+.+|...|.+++|+|++++|++|+.|+.|++||... +.+. ....|...|.+++|+|++++|++++.|+.|
T Consensus 334 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~~~---~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v 409 (577)
T 2ymu_A 334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ---TLTGHSSSVRGVAFSPDGQTIASASDDKTV 409 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-CEEE---EEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CEEE---EecCCCCCeEEEEECCCCCEEEEEeCCCEE
Confidence 344556788999999999999999999999999999999654 3443 345678889999999999999999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeE
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 273 (443)
++||... +..... .+|...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+|...|+
T Consensus 410 ~~~~~~~-~~~~~~----------------~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 410 KLWNRNG-QLLQTL----------------TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVR 471 (577)
T ss_dssp EEECTTC-CEEEEE----------------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEE
T ss_pred EEEeCCC-CEEEEe----------------cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEE
Confidence 9999643 322111 136668999999999999999999999999996 5667888899999999
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccc
Q 013436 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (443)
+++|+ +++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|+|||..
T Consensus 472 ~~~~s-pd~~~las~~~d~~i~iw~~-----~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~------- 538 (577)
T 2ymu_A 472 GVAFS-PDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------- 538 (577)
T ss_dssp EEEEC-TTSCEEEEEETTSEEEEEET-----TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-------
T ss_pred EEEEc-CCCCEEEEEeCCCEEEEEcC-----CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-------
Confidence 99998 88999999999999999996 678889999999999999999999999999999999999963
Q ss_pred cCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEE
Q 013436 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd 426 (443)
++.+..+.+|...+.. .+|+|||++|+|++.||+|++||
T Consensus 539 ----------------------------~~~~~~~~~h~~~v~~------~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 539 ----------------------------GQLLQTLTGHSSSVWG------VAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ----------------------------SCEEEEEECCSSCEEE------EEECTTSSCEEEEETTSCEEEEC
T ss_pred ----------------------------CCEEEEEcCCCCCEEE------EEEcCCCCEEEEEeCCCEEEEeC
Confidence 3568889999854332 34667999999999999999997
No 38
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=291.97 Aligned_cols=282 Identities=10% Similarity=0.022 Sum_probs=205.4
Q ss_pred cccCCCCceEEEEECCC------CCEEEEEECCCeEEEEECCCCeEE-----E---EeeecCCccceEEEEEECCCCCeE
Q 013436 119 PVDQTTSRAYVSQFSAD------GSLFVAGFQASQIRIYDVERGWKI-----Q---KDILAKSLRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~------~~~l~~g~~d~~i~iwd~~~~~~~-----~---~~~~~~~~~~~v~~i~~s~~~~~l 184 (443)
.+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++... . ......+|...|++++|+|++ .|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence 35678899999999997 579999999999999999876321 0 112345788899999999864 89
Q ss_pred EEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEE--EEeCCC-CEEEEEecCCeEEEEECCCCee
Q 013436 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL--KFSTDG-RELVAGSSDDCIYVYDLEANKL 261 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l--~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 261 (443)
++|+.||+|++||+.++.... ... .+|...|.++ .|+|++ .+|++|+.|++|+|||++++++
T Consensus 281 asgs~DgtV~lWD~~~~~~~~--~~~-------------~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPS--FYD-------------QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCS--EEE-------------ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEEeCCCEEEEEECCCCCCce--EEe-------------ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 999999999999998763211 001 1466789999 578887 8999999999999999999888
Q ss_pred eEEeeccCC--CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCC
Q 013436 262 SLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (443)
Q Consensus 262 ~~~~~~~~~--~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 339 (443)
+..+.+|.. .|.+++|+ |++..+++++.|++|++||++ .+.++..+.+|...|++++|+|++++|++|+.|++
T Consensus 346 ~~~~~~~~~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~----~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt 420 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSR----AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS 420 (524)
T ss_dssp HCEEEEECSCCSCCCEEEE-TTTTEEEEECSSSEEEEEETT----CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE
T ss_pred ccccccccccCcccceEeC-CCcCeEEEeCCCCcEEEEECc----ccccceeeecCCCceEEEEeCCCCCeEEEEECCCE
Confidence 777777754 58899998 778889999999999999998 77777888899999999999999999999999999
Q ss_pred EEEEeCCCCCCccccCCcc-cccCcccccccCCCCCCcccC----------CCCeeEEEEeccceeeeeeEEEecCCccC
Q 013436 340 IKLWDIRKMSSNASCNLGF-RSYEWDYRWMDYPPQARDLKH----------PCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (443)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (443)
|++||+... ......... ....+.+..+.+++++..+.. ..+..+..+.+|...+. .+. |+|
T Consensus 421 v~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~--~Va----fsp 493 (524)
T 2j04_B 421 LIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINIT--CTK----WNE 493 (524)
T ss_dssp EECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCC--CEE----ECC
T ss_pred EEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEE--EEE----CCC
Confidence 999998653 111110000 001111223455555432211 12455667777874333 334 555
Q ss_pred Cc---cEEEEeeCCCeEEEEEcc
Q 013436 409 GQ---KYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 409 d~---~~l~tg~~dg~v~iwd~~ 428 (443)
++ .++|+|+.||.|+||++.
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECS
T ss_pred CCCccHHHHhhccCceEEEEEcc
Confidence 64 599999999999999985
No 39
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-35 Score=273.32 Aligned_cols=272 Identities=16% Similarity=0.207 Sum_probs=214.6
Q ss_pred cccceeecccccCCCccccC-CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC
Q 013436 103 DCCHMLSRYLPVNGPWPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (443)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~ 181 (443)
+....++.....+....+.. |...|.+++|+|++++|++|+.||.|++||+.++..+.. ...|...|.+++| ++
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~--~~ 186 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT---MAGHQARVGCLSW--NR 186 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEE--ET
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE---ecCCCCceEEEEE--CC
Confidence 33444565555555444544 899999999999999999999999999999999866654 4578889999999 56
Q ss_pred CeEEEEECCCeEEEEECCCCce-eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe
Q 013436 182 RHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (443)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 260 (443)
..|++++.||.|++||+..... .... .+|...|.+++|+|++.+|++|+.||.|++||+++++
T Consensus 187 ~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 250 (401)
T 4aez_A 187 HVLSSGSRSGAIHHHDVRIANHQIGTL----------------QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI 250 (401)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEE----------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS
T ss_pred CEEEEEcCCCCEEEEecccCcceeeEE----------------cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC
Confidence 7999999999999999985432 1111 1366689999999999999999999999999999999
Q ss_pred eeEEeeccCCCeEEEEEeCCCCCEEEEee--CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe--C
Q 013436 261 LSLRILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--K 336 (443)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~ 336 (443)
.+..+..|...|.+++|+|.+..++++++ .|+.|++||++ .++.+..+. +...|.+++|+|++++|++++ .
T Consensus 251 ~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~----~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~ 325 (401)
T 4aez_A 251 PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA----TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFP 325 (401)
T ss_dssp EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT----TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTT
T ss_pred ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC----CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecC
Confidence 99999999999999999966778888876 79999999998 777777775 667899999999999999854 8
Q ss_pred CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEe
Q 013436 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (443)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg 416 (443)
||.|++||+++.. ......+.+|... +..+ .|+|++++|+++
T Consensus 326 dg~i~v~~~~~~~--------------------------------~~~~~~~~~h~~~--v~~~----~~s~dg~~l~s~ 367 (401)
T 4aez_A 326 DNNLSIWSYSSSG--------------------------------LTKQVDIPAHDTR--VLYS----ALSPDGRILSTA 367 (401)
T ss_dssp TCEEEEEEEETTE--------------------------------EEEEEEEECCSSC--CCEE----EECTTSSEEEEE
T ss_pred CCcEEEEecCCcc--------------------------------ceeEEEecCCCCC--EEEE----EECCCCCEEEEE
Confidence 9999999998732 1223345677643 3333 356699999999
Q ss_pred eCCCeEEEEEccChhhhhHhHH
Q 013436 417 SHDSCVYVYDLVSIQILFCRQS 438 (443)
Q Consensus 417 ~~dg~v~iwd~~~g~~~~~~~~ 438 (443)
+.||.|++||+.+++.+.....
T Consensus 368 ~~dg~i~iw~~~~~~~~~~~~~ 389 (401)
T 4aez_A 368 ASDENLKFWRVYDGDHVKRPIP 389 (401)
T ss_dssp CTTSEEEEEECCC---------
T ss_pred eCCCcEEEEECCCCcccccccc
Confidence 9999999999999987765443
No 40
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-37 Score=285.82 Aligned_cols=214 Identities=13% Similarity=0.103 Sum_probs=172.3
Q ss_pred ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECC
Q 013436 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 199 (443)
...+.++|++++|+|++++|++|+.|+.|+|||+.++. ........+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 44567899999999999999999999999999999873 12333566889999999999999999999999999999998
Q ss_pred CCc-eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe---eeEEeec-cCCCeEE
Q 013436 200 SGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILA-HTSDVNT 274 (443)
Q Consensus 200 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~ 274 (443)
++. ...... ..+|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+
T Consensus 86 ~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~ 151 (377)
T 3dwl_C 86 PDGTWKQTLV--------------LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS 151 (377)
T ss_dssp ---CCCCEEE--------------CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred CCCceeeeeE--------------ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence 876 111111 11366689999999999999999999999999999887 4677777 9999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCC--------------CCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCE
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLN--------------VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 340 (443)
++|+ +++++|++++.|+.|++||++... ..++++..+ +|...|++++|+|++++|++++.|+.|
T Consensus 152 ~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 152 LDWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EEEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 9998 789999999999999999985221 024456666 899999999999999999999999999
Q ss_pred EEEeCCCCCC
Q 013436 341 KLWDIRKMSS 350 (443)
Q Consensus 341 ~iwd~~~~~~ 350 (443)
++||+++...
T Consensus 230 ~iwd~~~~~~ 239 (377)
T 3dwl_C 230 TIAYPSAPEQ 239 (377)
T ss_dssp C-CEECSTTS
T ss_pred EEEECCCCCC
Confidence 9999998776
No 41
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.4e-36 Score=279.72 Aligned_cols=275 Identities=13% Similarity=0.135 Sum_probs=216.8
Q ss_pred ccceeecccccC------CCccccCCCCceEEEEECCC----C---CEEEEEECCCeEEEEECCCCeE-----EEEeeec
Q 013436 104 CCHMLSRYLPVN------GPWPVDQTTSRAYVSQFSAD----G---SLFVAGFQASQIRIYDVERGWK-----IQKDILA 165 (443)
Q Consensus 104 ~~~~~~~~~~~~------~~~~~~~h~~~v~~~~~s~~----~---~~l~~g~~d~~i~iwd~~~~~~-----~~~~~~~ 165 (443)
....++...... ....+.+|...|.+++|+|+ + ++|++++.|+.|++||+.++.. +.. .
T Consensus 36 g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~ 112 (397)
T 1sq9_A 36 GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK---L 112 (397)
T ss_dssp SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE---E
T ss_pred CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee---e
Confidence 334455554444 46677899999999999999 9 9999999999999999987753 333 3
Q ss_pred CCc-----cceEEEEEEC----CCCCe-EEEEECCCeEEEEECCC------CceeccccceecccCceeeccCCCCceec
Q 013436 166 KSL-----RWTVTDTSLS----PDQRH-LVYASMSPIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGGYSFG 229 (443)
Q Consensus 166 ~~~-----~~~v~~i~~s----~~~~~-l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (443)
..| ...|.+++|+ |++++ |++++.||.|++||+.+ ++........... ........|...
T Consensus 113 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 188 (397)
T 1sq9_A 113 DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ----GTVESPMTPSQF 188 (397)
T ss_dssp CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE----EEECCSSSSCCC
T ss_pred cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceee----eeeccccCCCCC
Confidence 344 5789999999 99999 99999999999999987 4433211000000 000001235668
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec---c---CCCeEEEEEeCCCCCEEEEeeCC---CeEEEEecc
Q 013436 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---H---TSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRR 300 (443)
Q Consensus 230 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~v~~i~~~~~~~~~l~~~~~d---~~i~iwd~~ 300 (443)
|.+++|+|++ .|++++.||.|++||+++++.+..+.. | ...|.+++|+ +++++|++++.| +.|++||++
T Consensus 189 i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~-~~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 189 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp CCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SSTTEEEEEEEETTEEEEEEEETT
T ss_pred ceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC-CCCCEEEEEecCCCCceEEEEECC
Confidence 9999999999 999999999999999999999999988 8 9999999998 789999999999 999999998
Q ss_pred cCCCCCceeeeecC-------------CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCccccc
Q 013436 301 CLNVKGKPAGVLMG-------------HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 367 (443)
Q Consensus 301 ~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (443)
.++.+..+.+ |...|.+++|+|++++|++++.||.|++||+++
T Consensus 267 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------------------- 322 (397)
T 1sq9_A 267 ----FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-------------------- 322 (397)
T ss_dssp ----TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--------------------
T ss_pred ----CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC--------------------
Confidence 7888888888 999999999999999999999999999999988
Q ss_pred ccCCCCCCcccCCCCeeEEEEe------cc---------------ceeeeeeEEEecCCccCCc----------cEEEEe
Q 013436 368 MDYPPQARDLKHPCDQSVATYK------GH---------------SVLRTLIRCHFSPVYSTGQ----------KYIYTG 416 (443)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~~~~~~~~~~~~~s~d~----------~~l~tg 416 (443)
.+.+..+. +| .. .+..+. |+|++ ++|++|
T Consensus 323 --------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~v~~~~----~~~~g~~~~~~~~~~~~l~s~ 382 (397)
T 1sq9_A 323 --------------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEP--GVFDVK----FLKKGWRSGMGADLNESLCCV 382 (397)
T ss_dssp --------------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC--CEEEEE----EECTTTSBSTTCTTSCEEEEE
T ss_pred --------------CceeEEEecccCcccchhhhhccccccccccCC--ceeEEE----eccccccccccccccceEEEe
Confidence 45566666 44 32 233333 55577 799999
Q ss_pred eCCCeEEEEEccChh
Q 013436 417 SHDSCVYVYDLVSIQ 431 (443)
Q Consensus 417 ~~dg~v~iwd~~~g~ 431 (443)
+.||.|++||+.+|+
T Consensus 383 ~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 383 CLDRSIRWFREAGGK 397 (397)
T ss_dssp ETTTEEEEEEEEC--
T ss_pred cCCCcEEEEEcCCCC
Confidence 999999999998874
No 42
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-36 Score=289.85 Aligned_cols=296 Identities=14% Similarity=0.190 Sum_probs=216.3
Q ss_pred CCCccc-cCCCCceEEEEECC-CCCEEEEEECCCeEEEEECCC---CeEEEEeeecCCccceEEEEEECCCCCeEEEEEC
Q 013436 115 NGPWPV-DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (443)
Q Consensus 115 ~~~~~~-~~h~~~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~ 189 (443)
+....+ .+|.+.|++++|+| ++++|++|+.||.|+|||+.+ +...... ....|...|.+++|+|++++|++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS-LTYDCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS-EEEECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee-eeccCCCCEEEEEEeCCCCEEEEEeC
Confidence 344556 88999999999999 999999999999999999876 4211111 12247889999999999999999999
Q ss_pred CCeEEEEECC---CCceeccccceecccCceeeccCCCCceecEEEEE--EeCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 013436 190 SPIVHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK--FSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 190 dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 264 (443)
||.|++||+. +++......... ...+.+... ++...+.++. +++++.+|++|+.||.|++||+++++++..
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~-i~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCEC-IRKINLKNF---GKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEE-EEEEEGGGG---SSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEEeccccCCceeeccccce-eEEEEccCc---ccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 9999999995 444333222110 001111110 1334677777 668999999999999999999999999999
Q ss_pred eec--cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec-CCCCCeEEEEEC----CCCCEEEEEeCC
Q 013436 265 ILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSR----GDGRYLISNGKD 337 (443)
Q Consensus 265 ~~~--~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~----~~~~~l~s~~~d 337 (443)
+.. |...|++++|+ +++++|++|+.||.|++||++ .++++..+. .|...|++++|+ |++.+|++++.|
T Consensus 208 ~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d 282 (437)
T 3gre_A 208 IENSPRHGAVSSICID-EECCVLILGTTRGIIDIWDIR----FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK 282 (437)
T ss_dssp EECCGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETT----TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT
T ss_pred EccCCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcC----CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC
Confidence 987 89999999997 789999999999999999998 788888875 788899999655 568899999999
Q ss_pred CCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEec--cceeeeeeEEEecCCccCCccEEEE
Q 013436 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG--HSVLRTLIRCHFSPVYSTGQKYIYT 415 (443)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~d~~~l~t 415 (443)
|.|++||+++.+....+.. .......+.+.++...+... .+.+ |..... .+ +|+ ++++|++
T Consensus 283 g~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~v~--~l----~~~-~~~~l~s 345 (437)
T 3gre_A 283 TFLTIWNFVKGHCQYAFIN----SDEQPSMEHFLPIEKGLEEL------NFCGIRSLNALS--TI----SVS-NDKILLT 345 (437)
T ss_dssp EEEEEEETTTTEEEEEEES----SSSCCCGGGGSCBCSSGGGC------CCCCCCSGGGGC--CE----EEE-TTEEEEE
T ss_pred CcEEEEEcCCCcEEEEEEc----CCCCCccceecccccccccc------eecccccCCceE--EE----EEC-CceEEEe
Confidence 9999999998554333211 11111222333333222110 1223 332222 22 344 5799999
Q ss_pred eeCCCeEEEEEccChhhhhHhH
Q 013436 416 GSHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 416 g~~dg~v~iwd~~~g~~~~~~~ 437 (443)
|+.||.|++||+.+++.+..+.
T Consensus 346 ~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 346 DEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp EGGGTEEEEEETTCGGGCEEEE
T ss_pred cCCCCeEEEEECCCcccceEEe
Confidence 9999999999999998776554
No 43
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-35 Score=274.80 Aligned_cols=254 Identities=14% Similarity=0.117 Sum_probs=210.2
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEEC
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 198 (443)
.+..|..+|++++|+|++++|++|+.|+.|++||+.++. .........|...|.+++|+|++++|++++.|+.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 345689999999999999999999999999999999885 1122234578889999999999999999999999999999
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee---eEE-eeccCCCeEE
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLR-ILAHTSDVNT 274 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~-~~~~~~~v~~ 274 (443)
.+++........ +|...|.+++|+|++++|++++.|+.|++||++.++. ... ...|...|.+
T Consensus 82 ~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~ 147 (372)
T 1k8k_C 82 KGRTWKPTLVIL--------------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 147 (372)
T ss_dssp ETTEEEEEEECC--------------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred CCCeeeeeEEee--------------cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence 887643332211 3555899999999999999999999999999988762 233 3578899999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccC--------------CCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCE
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCL--------------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 340 (443)
++|+ +++++|++++.|+.|++||++.. ...+..+..+.+|...|.+++|+|++++|++++.|+.|
T Consensus 148 ~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 148 LDWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred EEEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 9998 78899999999999999996421 11467788888999999999999999999999999999
Q ss_pred EEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCC
Q 013436 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 420 (443)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg 420 (443)
++||+++ .+.+..+..|.... ..+ .|+|++++|++| .||
T Consensus 227 ~i~d~~~----------------------------------~~~~~~~~~~~~~v--~~~----~~~~~~~~l~~~-~d~ 265 (372)
T 1k8k_C 227 CLADADK----------------------------------KMAVATLASETLPL--LAV----TFITESSLVAAG-HDC 265 (372)
T ss_dssp EEEEGGG----------------------------------TTEEEEEECSSCCE--EEE----EEEETTEEEEEE-TTS
T ss_pred EEEECCC----------------------------------CceeEEEccCCCCe--EEE----EEecCCCEEEEE-eCC
Confidence 9999987 45577787776432 233 355689988888 999
Q ss_pred eEEEEEccC
Q 013436 421 CVYVYDLVS 429 (443)
Q Consensus 421 ~v~iwd~~~ 429 (443)
.|++||+.+
T Consensus 266 ~i~i~~~~~ 274 (372)
T 1k8k_C 266 FPVLFTYDS 274 (372)
T ss_dssp SCEEEEEET
T ss_pred eEEEEEccC
Confidence 999999988
No 44
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-35 Score=277.21 Aligned_cols=260 Identities=15% Similarity=0.238 Sum_probs=214.3
Q ss_pred ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCC----CeEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCeEE
Q 013436 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER----GWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVH 194 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~ 194 (443)
...|...|.+++|+|++++|++|+.||.|++||+.+ ...+ .....|...|.+++|+|+ +++|++++.|+.|+
T Consensus 63 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 63 SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSM---ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEE---EECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred EEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccch---hhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 346899999999999999999999999999999987 2233 245678889999999998 89999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEecCCeEEEEECCCCeeeEEeecc-----
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAH----- 268 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----- 268 (443)
+||+.+++....... .+......+|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..+
T Consensus 140 iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 212 (416)
T 2pm9_A 140 IWDMNKCTESPSNYT-------PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG 212 (416)
T ss_dssp BCBTTTTSSCTTTCC-------CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred EEECCCCcccccccc-------ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence 999988762110000 0000012246678999999998 789999999999999999999988888776
Q ss_pred -CCCeEEEEEeCCCCCEEEEeeCCC---eEEEEecccCCCCC-ceeeeec-CCCCCeEEEEECC-CCCEEEEEeCCCCEE
Q 013436 269 -TSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKG-KPAGVLM-GHLEGITFIDSRG-DGRYLISNGKDQAIK 341 (443)
Q Consensus 269 -~~~v~~i~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~dg~i~ 341 (443)
...|.+++|+|.+..++++++.|+ .|++||++ .. .++..+. +|...|++++|+| ++++|++++.|+.|+
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~ 288 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR----NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL 288 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT----STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEE
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC----CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEE
Confidence 789999999855558999999999 99999998 43 5677777 8999999999999 999999999999999
Q ss_pred EEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCc-cEEEEeeCCC
Q 013436 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDS 420 (443)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~tg~~dg 420 (443)
+||+++ .+.+..+.+|..... .+ .|+|++ .+|++++.||
T Consensus 289 ~wd~~~----------------------------------~~~~~~~~~~~~~v~--~~----~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 289 LWNPES----------------------------------AEQLSQFPARGNWCF--KT----KFAPEAPDLFACASFDN 328 (416)
T ss_dssp EECSSS----------------------------------CCEEEEEECSSSCCC--CE----EECTTCTTEEEECCSSS
T ss_pred EeeCCC----------------------------------CccceeecCCCCceE--EE----EECCCCCCEEEEEecCC
Confidence 999988 456778888874333 23 356688 8999999999
Q ss_pred eEEEEEccChhhh
Q 013436 421 CVYVYDLVSIQIL 433 (443)
Q Consensus 421 ~v~iwd~~~g~~~ 433 (443)
.|++||+.+++..
T Consensus 329 ~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 329 KIEVQTLQNLTNT 341 (416)
T ss_dssp EEEEEESCCCCCS
T ss_pred cEEEEEccCCCCC
Confidence 9999999887643
No 45
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.5e-35 Score=286.55 Aligned_cols=253 Identities=23% Similarity=0.339 Sum_probs=215.1
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeE
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 193 (443)
.+....+.+|...|.+++|+|++++|++++.|+.|++||+... .+. ....|...|.+++|+|++++|++++.|+.|
T Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQ---TLTGHSSSVWGVAFSPDGQTIASASDDKTV 368 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---EECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeE---EEeCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 3445567899999999999999999999999999999998765 333 345778889999999999999999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeE
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 273 (443)
++||... +...... +|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|+
T Consensus 369 ~~~~~~~-~~~~~~~----------------~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~ 430 (577)
T 2ymu_A 369 KLWNRNG-QLLQTLT----------------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW 430 (577)
T ss_dssp EEEETTC-CEEEEEE----------------CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEE
T ss_pred EEEcCCC-CEEEEec----------------CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeE
Confidence 9999643 3222111 35568999999999999999999999999995 5677888899999999
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccc
Q 013436 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (443)
+++|+ +++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||..
T Consensus 431 ~~~~s-~d~~~l~~~~~d~~v~~w~~-----~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~------- 497 (577)
T 2ymu_A 431 GVAFS-PDDQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------- 497 (577)
T ss_dssp EEEEC-TTSSEEEEEETTSEEEEEET-----TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-------
T ss_pred EEEEC-CCCCEEEEEcCCCEEEEEEC-----CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-------
Confidence 99998 88999999999999999996 567888899999999999999999999999999999999954
Q ss_pred cCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhh
Q 013436 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
++.+..+.+|...+.. + +|+|||++|++++.||.|++||. +++++
T Consensus 498 ----------------------------~~~~~~~~~h~~~v~~--l----~~s~dg~~l~s~~~dg~v~lwd~-~~~~~ 542 (577)
T 2ymu_A 498 ----------------------------GQLLQTLTGHSSSVRG--V----AFSPDGQTIASASDDKTVKLWNR-NGQLL 542 (577)
T ss_dssp ----------------------------SCEEEEEECCSSCEEE--E----EECTTSSCEEEEETTSEEEEECT-TSCEE
T ss_pred ----------------------------CCEEEEEeCCCCCEEE--E----EEcCCCCEEEEEECcCEEEEEeC-CCCEE
Confidence 3567888888854433 3 36679999999999999999996 56655
Q ss_pred hHh
Q 013436 434 FCR 436 (443)
Q Consensus 434 ~~~ 436 (443)
..+
T Consensus 543 ~~~ 545 (577)
T 2ymu_A 543 QTL 545 (577)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 46
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.7e-35 Score=272.07 Aligned_cols=302 Identities=12% Similarity=0.083 Sum_probs=220.6
Q ss_pred ceeecccccC--CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCe
Q 013436 106 HMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183 (443)
Q Consensus 106 ~~~~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 183 (443)
..++.....+ ....+.+|...|.+++|+|++++|++++.|+.|++||+.++..... .....|...|.+++|+|++++
T Consensus 32 v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~ 110 (372)
T 1k8k_C 32 VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT-LVILRINRAARCVRWAPNEKK 110 (372)
T ss_dssp EEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE-EECCCCSSCEEEEEECTTSSE
T ss_pred EEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee-EEeecCCCceeEEEECCCCCE
Confidence 3344444433 5667789999999999999999999999999999999988854433 334567888999999999999
Q ss_pred EEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEEC-------
Q 013436 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL------- 256 (443)
Q Consensus 184 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~------- 256 (443)
|++++.|+.|++||+..+......... ..+|...|.+++|+|++++|++++.||.|++||+
T Consensus 111 l~~~~~d~~v~i~d~~~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 178 (372)
T 1k8k_C 111 FAVGSGSRVISICYFEQENDWWVCKHI------------KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 178 (372)
T ss_dssp EEEEETTSSEEEEEEETTTTEEEEEEE------------CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred EEEEeCCCEEEEEEecCCCcceeeeee------------ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccc
Confidence 999999999999999877532111111 1135668999999999999999999999999995
Q ss_pred -----------CCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEEC
Q 013436 257 -----------EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (443)
Q Consensus 257 -----------~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 325 (443)
..++.+..+..|...|.+++|+ +++++|++++.|+.|++||++ .++.+..+..|...|.+++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~ 253 (372)
T 1k8k_C 179 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADAD----KKMAVATLASETLPLLAVTFI 253 (372)
T ss_dssp CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGG----GTTEEEEEECSSCCEEEEEEE
T ss_pred cccccccccccchhhheEecCCCCCeEEEEEEC-CCCCEEEEEeCCCEEEEEECC----CCceeEEEccCCCCeEEEEEe
Confidence 3677888888999999999998 788999999999999999998 788999999999999999999
Q ss_pred CCCCEEEEEeCCCCEEEEeCCC--CC--CccccCCcccccCcc---cccc-cCCCCCCcccCCCCeeEEEE-eccceeee
Q 013436 326 GDGRYLISNGKDQAIKLWDIRK--MS--SNASCNLGFRSYEWD---YRWM-DYPPQARDLKHPCDQSVATY-KGHSVLRT 396 (443)
Q Consensus 326 ~~~~~l~s~~~dg~i~iwd~~~--~~--~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 396 (443)
|++++|+++ .|+.|++||++. .. ............... .... ...........|.. ...+ .+|...+.
T Consensus 254 ~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~ 330 (372)
T 1k8k_C 254 TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA--GAGLDSLHKNSVS 330 (372)
T ss_dssp ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----------CCCSSSSSSCEE
T ss_pred cCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc--cccccccccCCcc
Confidence 999988877 899999999987 21 111110000000000 0000 00000000000000 0122 36664333
Q ss_pred eeEEEecCCccCCc---cEEEEeeCCCeEEEEEccChhhh
Q 013436 397 LIRCHFSPVYSTGQ---KYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 397 ~~~~~~~~~~s~d~---~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
.+.|. +++| .+|++|+.||.|++||+.+++.+
T Consensus 331 --~~~~~---~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 331 --QISVL---SGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp --EEEEE---ESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred --eeEEe---cCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 33333 2477 99999999999999999887654
No 47
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-35 Score=274.03 Aligned_cols=254 Identities=15% Similarity=0.211 Sum_probs=206.9
Q ss_pred CCCceEEEEECCC----CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC-CCCeEEEEECCCeEEEEE
Q 013436 123 TTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 123 h~~~v~~~~~s~~----~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd 197 (443)
|...|++++|+|+ +++|++|+.||.|++||+.+++.+.. ...|...|.+++|+| ++.+|++++.||.|++||
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH---YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE---EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee---ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 6788999999999 67999999999999999999866654 446888999999999 899999999999999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee-----------
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL----------- 266 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------- 266 (443)
+.+++....... ..+|...|.+++|+|++.+|++++.||.|++||+++++....+.
T Consensus 145 ~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 211 (366)
T 3k26_A 145 IQTDTLVAIFGG-------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTN 211 (366)
T ss_dssp TTTTEEEEEECS-------------TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCS
T ss_pred eecCeEEEEecc-------------cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCc
Confidence 998876543321 11366689999999999999999999999999999876544333
Q ss_pred -----------------ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCC----------CCceeeeecCCCCCe
Q 013436 267 -----------------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV----------KGKPAGVLMGHLEGI 319 (443)
Q Consensus 267 -----------------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~~v 319 (443)
.|...|.+++|+ ++++++++.|+.|++||++.... ....+..+..|...|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 288 (366)
T 3k26_A 212 RPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI 288 (366)
T ss_dssp SCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS
T ss_pred ccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE
Confidence 399999999997 67999999999999999984321 113477788899999
Q ss_pred EEEEECCC--CCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeee
Q 013436 320 TFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (443)
Q Consensus 320 ~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (443)
++++|+|+ +++|++++.||.|++||+++.+... .....+.+|.....+
T Consensus 289 ~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------------~~~~~~~~~~~~~~v 338 (366)
T 3k26_A 289 WYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK------------------------------AKCTTLTHHKCGAAI 338 (366)
T ss_dssp SCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG------------------------------CEEEEECCTTCCSCE
T ss_pred EEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc------------------------------ccceEEcccccCCce
Confidence 99999999 9999999999999999998854321 235567777433344
Q ss_pred eEEEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 398 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 398 ~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
..+. |+|++++|++|+.||.|++||+.+
T Consensus 339 ~~~~----~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 339 RQTS----FSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEE----ECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEE----eCCCCCeEEEEeCCCEEEEEEecC
Confidence 4444 555899999999999999999863
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-33 Score=258.26 Aligned_cols=242 Identities=20% Similarity=0.257 Sum_probs=203.2
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 201 (443)
+|...|.+++|+|++++|++++.|+.|++||+.++... .......|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 173 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ 173 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 79999999999999999999999999999999987532 22345567778999999999999999999999999999987
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCC
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 281 (443)
+...... +|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+...+.+++|+ ++
T Consensus 174 ~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s-~~ 235 (337)
T 1gxr_A 174 TLVRQFQ----------------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYC-PT 235 (337)
T ss_dssp EEEEEEC----------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEEC-TT
T ss_pred ceeeeee----------------cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEEC-CC
Confidence 6544322 35558999999999999999999999999999999887776 578899999998 88
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCccccc
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (443)
++++++++.|+.|++||++ ..+ ...+..|...|.+++|+|++++|++++.||.|++||+.+.
T Consensus 236 ~~~l~~~~~~~~i~~~~~~----~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~------------- 297 (337)
T 1gxr_A 236 GEWLAVGMESSNVEVLHVN----KPD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG------------- 297 (337)
T ss_dssp SSEEEEEETTSCEEEEETT----SSC-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------------
T ss_pred CCEEEEEcCCCcEEEEECC----CCC-eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC-------------
Confidence 9999999999999999997 444 3467789999999999999999999999999999999883
Q ss_pred CcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 362 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
+.+... .|.. .+.. ..|+|++++|++++.||.|++||+.
T Consensus 298 ---------------------~~~~~~-~~~~--~v~~----~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 298 ---------------------ASIFQS-KESS--SVLS----CDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ---------------------CEEEEE-ECSS--CEEE----EEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ---------------------eEEEEe-cCCC--cEEE----EEECCCCCEEEEecCCCeEEEEEEe
Confidence 333222 2332 2222 3466699999999999999999974
No 49
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.8e-35 Score=299.35 Aligned_cols=257 Identities=18% Similarity=0.265 Sum_probs=221.7
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
...+.+|.+.|.+++|+|++++||+|+.||.|+|||+.++..+.. ...|..+|.+++|+|++++|++++.||.|++|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS---IQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE---EECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE---EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 456789999999999999999999999999999999999866654 44678899999999999999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEeeccCCCeEEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV 275 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i 275 (443)
|+.+++...... +|...|.+++|+|++++|++++.||.|++||+.++ .....+..|...|.++
T Consensus 83 ~~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 83 NYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred ECCCCcEEEEEe----------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence 999887644332 35668999999999999999999999999999887 6777888999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC-CCeEEEEECC--CCCEEEEEeCCCCEEEEeCCCCCCcc
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNA 352 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (443)
+|+|.+++.|++++.||.|++||++ .+.....+..+. ..+.+++|+| ++.+|++++.||.|++||+++
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~----- 217 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----- 217 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-----
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC----CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-----
Confidence 9995488999999999999999998 566666665554 8999999999 999999999999999999987
Q ss_pred ccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhh
Q 013436 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~ 432 (443)
...+..+.+|..... .+ .|+|++++|++|+.||.|++||+.+++.
T Consensus 218 -----------------------------~~~~~~~~~~~~~v~--~~----~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 218 -----------------------------KSCVATLEGHMSNVS--FA----VFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp -----------------------------TEEEEEEECCSSCEE--EE----EECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred -----------------------------CcEEEEEcCCCCCEE--EE----EEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 566778888864333 23 3566899999999999999999998876
Q ss_pred hhHh
Q 013436 433 LFCR 436 (443)
Q Consensus 433 ~~~~ 436 (443)
+..+
T Consensus 263 ~~~~ 266 (814)
T 3mkq_A 263 EKTL 266 (814)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6544
No 50
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=270.88 Aligned_cols=278 Identities=15% Similarity=0.180 Sum_probs=214.6
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
|.+.|++++|+|++++|++|+.||.|++|| .++..+. ....|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence 788999999999999999999999999999 4454444 345788899999999999999999999999999999887
Q ss_pred eeccccceecc----------------cCceeec------------------------cCCCCceecEEEEEEeCCCCEE
Q 013436 203 MESLANVTEIH----------------DGLDFSA------------------------ADDGGYSFGIFSLKFSTDGREL 242 (443)
Q Consensus 203 ~~~~~~~~~~~----------------~~~~~~~------------------------~~~~~~~~~i~~l~~~~~~~~l 242 (443)
........... ..+.+.. ....+|...|.+++|+|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 65433222110 0000000 0113577899999999999999
Q ss_pred EEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEE
Q 013436 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (443)
Q Consensus 243 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 322 (443)
++++.||.|++||+++++.+..+..|...|.+++|+ +++ ++++++.|+.|++||++ .++.+..+..|...|.++
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~i~~~ 336 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV-GDD-KVISCSMDGSVRLWSLK----QNTLLALSIVDGVPIFAG 336 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEE-TTT-EEEEEETTSEEEEEETT----TTEEEEEEECTTCCEEEE
T ss_pred EEEcCCCEEEEEECCCCccceEecCCCccEEEEEEC-CCC-EEEEEeCCCcEEEEECC----CCcEeEecccCCccEEEE
Confidence 999999999999999999999999999999999998 566 99999999999999998 788899999999999999
Q ss_pred EECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEe
Q 013436 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (443)
Q Consensus 323 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (443)
+|+|++++|++++.||.|++||+++............ ...+.......+..+.+|.....+..+
T Consensus 337 ~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~-- 400 (425)
T 1r5m_A 337 RISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNR--------------DGILNPLPIPLYASYQSSQDNDYIFDL-- 400 (425)
T ss_dssp EECTTSSEEEEEETTSCEEEEECHHHHC----------------------------CEECCEEEEECCTTCCCCEEEE--
T ss_pred EEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccc--------------ccccCcccchhhhhhcCcccCCceEEE--
Confidence 9999999999999999999999987432111100000 000000112357778887541133333
Q ss_pred cCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 403 SPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 403 ~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
.|+|++++|++++.||.|++||+.
T Consensus 401 --~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 401 --SWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp --EECTTSSEEEEEESSSCCEEEECC
T ss_pred --EccCCCceEEEEecCceEEEEeec
Confidence 356689999999999999999985
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-34 Score=273.50 Aligned_cols=262 Identities=14% Similarity=0.183 Sum_probs=208.6
Q ss_pred cceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE
Q 013436 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 184 (443)
...++..........+..| ..+....|+|++++|++|+.||.|++||+.++.... ....|...|++++|+|++++|
T Consensus 79 ~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l 154 (420)
T 3vl1_A 79 HDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGEAL 154 (420)
T ss_dssp EEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSSEE
T ss_pred cEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCCEE
Confidence 3445555444555555666 556666899999999999999999999999885543 356888999999999999999
Q ss_pred EEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 013436 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 264 (443)
++++.|+.|++||+.+++...... +|...|.+++|+|++++|++++.||.|++||+++++.+..
T Consensus 155 ~s~s~d~~i~iwd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 218 (420)
T 3vl1_A 155 ISSSQDMQLKIWSVKDGSNPRTLI----------------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT 218 (420)
T ss_dssp EEEETTSEEEEEETTTCCCCEEEE----------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEeCCCeEEEEeCCCCcCceEEc----------------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence 999999999999999876543321 4666999999999999999999999999999999998888
Q ss_pred eec---cCCCeEEEEE---------------------eCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec-CCCCCe
Q 013436 265 ILA---HTSDVNTVCF---------------------GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGI 319 (443)
Q Consensus 265 ~~~---~~~~v~~i~~---------------------~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v 319 (443)
+.. +...+.++++ + +++++|++|+.||.|++||++ .++.+..+. .|...|
T Consensus 219 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~v 293 (420)
T 3vl1_A 219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG-TYGKYVIAGHVSGVITVHNVF----SKEQTIQLPSKFTCSC 293 (420)
T ss_dssp ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS-CTTEEEEEEETTSCEEEEETT----TCCEEEEECCTTSSCE
T ss_pred eecCCCCCCCccEEEEecCCcceeeecccCcccceEEc-CCCCEEEEEcCCCeEEEEECC----CCceeEEcccccCCCc
Confidence 874 4445555554 4 678899999999999999998 666665554 588899
Q ss_pred EEEEECCCCC-EEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeee
Q 013436 320 TFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (443)
Q Consensus 320 ~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (443)
++++|+|+++ +|++++.||.|++||+++.. ..+..+.+|.. ..+
T Consensus 294 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~---------------------------------~~~~~~~~~~~--~~v 338 (420)
T 3vl1_A 294 NSLTVDGNNANYIYAGYENGMLAQWDLRSPE---------------------------------CPVGEFLINEG--TPI 338 (420)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTT---------------------------------SCSEEEEESTT--SCE
T ss_pred eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc---------------------------------CchhhhhccCC--CCc
Confidence 9999999998 99999999999999999843 22445555331 112
Q ss_pred EEEecCCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 399 ~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
...+. +++++|++++.||.|++||+...
T Consensus 339 ~~~~~----~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 339 NNVYF----AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEEE----ETTEEEEEETTTEEEEEEEECCT
T ss_pred eEEEe----CCCCEEEEecCCccEEEEeccCC
Confidence 22222 36889999999999999999874
No 52
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.2e-35 Score=269.06 Aligned_cols=200 Identities=17% Similarity=0.150 Sum_probs=159.5
Q ss_pred eEEEEEECCCCCeEEEEE--CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC
Q 013436 171 TVTDTSLSPDQRHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 248 (443)
.+.+++|||||+++++++ .|++|+|||+.+++...... |...|.+++|+|||+++++++.+
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~V~~v~fspdg~~l~s~s~~ 197 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-----------------TRGEVKDLHFSTDGKVVAYITGS 197 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-----------------CSSCCCEEEECTTSSEEEEECSS
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-----------------CCCceEEEEEccCCceEEeccce
Confidence 477899999999987655 68999999999887654332 33379999999999999999865
Q ss_pred CeEEEEECCCCeeeEE--eeccCCCeEEEEEeCCCCCEEEEeeCCC----eEEEEecccCCCCCceeeeecCCCCCeEEE
Q 013436 249 DCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (443)
Q Consensus 249 g~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 322 (443)
+ +.+|+..+++.+.. ...|...|.+++|+ +++.++++++.|+ .+++||+............+.+|...|+++
T Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 275 (365)
T 4h5i_A 198 S-LEVISTVTGSCIARKTDFDKNWSLSKINFI-ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSM 275 (365)
T ss_dssp C-EEEEETTTCCEEEEECCCCTTEEEEEEEEE-ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEE
T ss_pred e-EEEEEeccCcceeeeecCCCCCCEEEEEEc-CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeE
Confidence 5 66777777665543 34688899999998 7888999998887 688899873221222345677899999999
Q ss_pred EECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEE-eccceeeeeeEEE
Q 013436 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLIRCH 401 (443)
Q Consensus 323 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 401 (443)
+|+|+|++||+|+.|++|+|||+++ .+.+..+ .+|...++.
T Consensus 276 ~~Spdg~~lasgs~D~~V~iwd~~~----------------------------------~~~~~~~~~gH~~~V~~---- 317 (365)
T 4h5i_A 276 DVDMKGELAVLASNDNSIALVKLKD----------------------------------LSMSKIFKQAHSFAITE---- 317 (365)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTT----------------------------------TEEEEEETTSSSSCEEE----
T ss_pred EECCCCCceEEEcCCCEEEEEECCC----------------------------------CcEEEEecCcccCCEEE----
Confidence 9999999999999999999999998 5667665 678854333
Q ss_pred ecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 402 ~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
.+|||||++||+|+.|++|+|||+..
T Consensus 318 --v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 318 --VTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp --EEECTTSCEEEEEETTSEEEEEECCT
T ss_pred --EEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 34677999999999999999999964
No 53
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=279.33 Aligned_cols=271 Identities=16% Similarity=0.233 Sum_probs=201.3
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeE--------EEEeeecCCcc------------ceEEEEEECCCC
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLR------------WTVTDTSLSPDQ 181 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~--------~~~~~~~~~~~------------~~v~~i~~s~~~ 181 (443)
.+.+.|++++|+|+|++||+|+.||.|+|||+.++.. ........+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999999999999999987642 11122344676 779999999998
Q ss_pred --CeEEEEECCCeEEEEECCCCceeccccceecccC----------cee--------------eccCCCCceecEEEEEE
Q 013436 182 --RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG----------LDF--------------SAADDGGYSFGIFSLKF 235 (443)
Q Consensus 182 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~~--------------~~~~~~~~~~~i~~l~~ 235 (443)
..|++++.|+.|++||+.++.............+ +.+ ......+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 7999999999999999976543211000000000 000 00012468889999999
Q ss_pred eCCCCEEEEEecCCeEEEEECCCC-eeeEE-------eeccCCCeEEEEEeCCCC-CEEEEeeCCCeEEEEecccCCCCC
Q 013436 236 STDGRELVAGSSDDCIYVYDLEAN-KLSLR-------ILAHTSDVNTVCFGDESG-HLIYSGSDDNLCKVWDRRCLNVKG 306 (443)
Q Consensus 236 ~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~-------~~~~~~~v~~i~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~ 306 (443)
+|++++|++| .|+.|++||+++. +.+.. +..|...|++++|+ +++ ++|++|+.||.|++||++ .+
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~----~~ 259 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMR----AS 259 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCEEEEETT----TC
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeEEEEECc----CC
Confidence 9999999998 7999999999844 44432 45899999999998 555 999999999999999998 44
Q ss_pred ce----eeeecCCCC------------CeEEEEECCCCCEEEEEeCCCCEEEEeCCC-CCCccccCCcccccCccccccc
Q 013436 307 KP----AGVLMGHLE------------GITFIDSRGDGRYLISNGKDQAIKLWDIRK-MSSNASCNLGFRSYEWDYRWMD 369 (443)
Q Consensus 307 ~~----~~~~~~~~~------------~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 369 (443)
.. +..+.+|.. .|.+++|+|++++|++++. +.|++||+++ .+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~-------------------- 318 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR-------------------- 318 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS--------------------
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc--------------------
Confidence 44 677888876 8999999999999999998 9999999986 32
Q ss_pred CCCCCCcccCCCCeeEEEEeccceeee---------eeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhh
Q 013436 370 YPPQARDLKHPCDQSVATYKGHSVLRT---------LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
.+..+.+|..... .+...+..+|+|++++|++|+.||.|++||+.+++.+
T Consensus 319 --------------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 319 --------------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp --------------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred --------------ccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 2334455542111 0000122456779999999999999999999988764
No 54
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.5e-35 Score=275.47 Aligned_cols=259 Identities=11% Similarity=0.095 Sum_probs=210.5
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCe------EEEEeeecCCccceEEEEEECCC----C---Ce
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------KIQKDILAKSLRWTVTDTSLSPD----Q---RH 183 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~v~~i~~s~~----~---~~ 183 (443)
...+.+|.+.|++++|+| ++|++|+.||.|+|||+.++. .+. ....|...|.+++|+|+ + ++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSY---SHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEE---EEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcce---EEecCCCcEEEEEEecccccCCccccE
Confidence 345789999999999999 899999999999999999875 233 23478889999999999 9 99
Q ss_pred EEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCc-----eecEEEEEEe----CCCCE-EEEEecCCeEEE
Q 013436 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY-----SFGIFSLKFS----TDGRE-LVAGSSDDCIYV 253 (443)
Q Consensus 184 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~l~~~----~~~~~-l~~~~~dg~i~i 253 (443)
|++++.|+.|++||+.+++......... ..+| ...|.+++|+ |++++ |++++.||.|++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEK-----------LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 152 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEE-----------ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred EEEEcCCCCEEEEEccCCccccccccee-----------ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEE
Confidence 9999999999999998776411000000 0023 3589999999 99999 999999999999
Q ss_pred EECCC------CeeeE-----Eee-------ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC-
Q 013436 254 YDLEA------NKLSL-----RIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG- 314 (443)
Q Consensus 254 wd~~~------~~~~~-----~~~-------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~- 314 (443)
||+++ ++.+. .+. .|...|.+++|+ +++ ++++++.|+.|++||++ ..+.+..+..
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~----~~~~~~~~~~~ 226 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELS----TLRPLYNFESQ 226 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETT----TTEEEEEEECC
T ss_pred EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECC----CCceeEEEecc
Confidence 99998 66665 663 488999999998 677 99999999999999998 7888888888
Q ss_pred --C---CCCeEEEEECCCCCEEEEEeCC---CCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEE
Q 013436 315 --H---LEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 386 (443)
Q Consensus 315 --~---~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (443)
| ...|.+++|+|++++|++++.| +.|++||+++ .+.+.
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~----------------------------------~~~~~ 272 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF----------------------------------GERIG 272 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT----------------------------------CCEEE
T ss_pred ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC----------------------------------Ccccc
Confidence 8 9999999999999999999999 9999999998 34455
Q ss_pred EEec-------------cceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhH
Q 013436 387 TYKG-------------HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 387 ~~~~-------------~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~ 437 (443)
.+.+ |... +..+ .|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~--v~~~----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 273 SLSVPTHSSQASLGEFAHSSW--VMSL----SFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EECBC--------CCBSBSSC--EEEE----EECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eeccCcccccccccccccCCc--EEEE----EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 6665 5532 2233 456689999999999999999999998776654
No 55
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=258.93 Aligned_cols=268 Identities=15% Similarity=0.200 Sum_probs=212.0
Q ss_pred CCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
+....+.+|.+.|++++| |++++|++|+.||.|++||+.++..... ...|...|.+++|+|++++|++++.|+.|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTV---VYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEE---EEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEE---eecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 344567899999999999 9999999999999999999988755543 345677899999999999999999999999
Q ss_pred EEECCCCceeccccceecccC----cee------ec---------------cCCCCceecEEEEEEeC-CCCEEEEEecC
Q 013436 195 IVDVGSGTMESLANVTEIHDG----LDF------SA---------------ADDGGYSFGIFSLKFST-DGRELVAGSSD 248 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~----~~~------~~---------------~~~~~~~~~i~~l~~~~-~~~~l~~~~~d 248 (443)
+|++..............+.. +.+ .. .....|...+.++.|+| ++..+++++.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 999876532111111111110 000 00 00124677899999998 89999999999
Q ss_pred CeEEEEECCCCeeeEEeec-cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC
Q 013436 249 DCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (443)
Q Consensus 249 g~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (443)
|.|++|| ..+....+.. |...+.+++|+ +++. +++++.|+.|++||++ .++.+..+.+|...|++++|+|+
T Consensus 165 ~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 165 KTIKLWQ--NDKVIKTFSGIHNDVVRHLAVV-DDGH-FISCSNDGLIKLVDMH----TGDVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp SCEEEEE--TTEEEEEECSSCSSCEEEEEEE-ETTE-EEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEECTT
T ss_pred CCEEEEe--cCceEEEEeccCcccEEEEEEc-CCCe-EEEccCCCeEEEEECC----chhhhhhhhcCCceEEEEEEecC
Confidence 9999999 4556666766 89999999998 6666 8899999999999998 78899999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCcc
Q 013436 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (443)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (443)
+ .|++++.||.|++||+++ .+.+..+..|... +..+ .|+
T Consensus 237 ~-~l~~~~~dg~v~iwd~~~----------------------------------~~~~~~~~~~~~~--i~~~----~~~ 275 (313)
T 3odt_A 237 G-DIVSCGEDRTVRIWSKEN----------------------------------GSLKQVITLPAIS--IWSV----DCM 275 (313)
T ss_dssp S-CEEEEETTSEEEEECTTT----------------------------------CCEEEEEECSSSC--EEEE----EEC
T ss_pred C-CEEEEecCCEEEEEECCC----------------------------------CceeEEEeccCce--EEEE----EEc
Confidence 9 588999999999999988 4567777777643 2233 356
Q ss_pred CCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 408 TGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 408 ~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
|+++ +++++.||.|++||+.+++.+...
T Consensus 276 ~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 276 SNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp TTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred cCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 6888 667999999999999998876544
No 56
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=285.24 Aligned_cols=293 Identities=11% Similarity=0.086 Sum_probs=218.0
Q ss_pred CCccccCCCCceEEEEECCC-CCEEEEEECCCeEEEEECCCCe------EEEEeeecCCccceEEEEEECCC-CCeEEEE
Q 013436 116 GPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGW------KIQKDILAKSLRWTVTDTSLSPD-QRHLVYA 187 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~-~~~l~~g~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~ 187 (443)
....+.+|...|.+++|+|+ +++|++++.|+.|++||+.++. ..........|...|.+++|+|+ +.+|+++
T Consensus 105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence 55677899999999999998 8999999999999999999875 33333334578889999999999 7899999
Q ss_pred ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCC---eEEEEECCCC-eee
Q 013436 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDD---CIYVYDLEAN-KLS 262 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg---~i~iwd~~~~-~~~ 262 (443)
+.|+.|++||+.+++.......... ..+|...|.+++|+|++ .++++++.++ .|++||++++ +++
T Consensus 185 ~~dg~v~iwd~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~ 254 (416)
T 2pm9_A 185 GSSNFASIWDLKAKKEVIHLSYTSP----------NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL 254 (416)
T ss_dssp SSSSCEEEEETTTTEEEEEECCCCC----------SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS
T ss_pred cCCCCEEEEECCCCCcceEEecccc----------ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc
Confidence 9999999999998876544332211 12345689999999997 6899999998 9999999986 667
Q ss_pred EEee-ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC-CEEEEEeCCCCE
Q 013436 263 LRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAI 340 (443)
Q Consensus 263 ~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i 340 (443)
..+. +|...|.+++|+|.++++|++++.|+.|++||++ .++.+..+.+|...|++++|+|++ .+|++++.|+.|
T Consensus 255 ~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 255 QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE----SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS----SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC----CCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence 7777 8999999999985589999999999999999998 788999999999999999999998 899999999999
Q ss_pred EEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCC-e--eEEEEeccceeeeeeEEEecCCccCCccEEEEee
Q 013436 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD-Q--SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (443)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~ 417 (443)
++||+.+........... .........+-+....+.+... . .+.....|. ......+|||||++|++|+
T Consensus 331 ~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~dg~~la~~~ 402 (416)
T 2pm9_A 331 EVQTLQNLTNTLDEQETE--TKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG------EPSPAAHWAFGGKLVQITP 402 (416)
T ss_dssp EEEESCCCCCSSCC------------------------CCSCCCSSCCCCCSTTC------CCSCCCEEETTTEEECBCT
T ss_pred EEEEccCCCCCccccccc--ccccCCcccccccccccccccccccccccCCcccc------CCccceEEeeCCeEEEEeC
Confidence 999999866443321100 0000000000000000000000 0 000001121 1122445778999999999
Q ss_pred CCCeEEEEEccCh
Q 013436 418 HDSCVYVYDLVSI 430 (443)
Q Consensus 418 ~dg~v~iwd~~~g 430 (443)
.||.|+||++.+.
T Consensus 403 ~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 403 DGKGVSITNPKIS 415 (416)
T ss_dssp TSSCBCCBCCCCC
T ss_pred CCCeEEEEEeccC
Confidence 9999999999864
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-34 Score=268.40 Aligned_cols=248 Identities=19% Similarity=0.268 Sum_probs=200.9
Q ss_pred cCCCCceEEEEECCCCC-EEEEEECCCeEEEEEC----CCCe------EEEEeee-cC------CccceEEEEEECCCCC
Q 013436 121 DQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDV----ERGW------KIQKDIL-AK------SLRWTVTDTSLSPDQR 182 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~-~l~~g~~d~~i~iwd~----~~~~------~~~~~~~-~~------~~~~~v~~i~~s~~~~ 182 (443)
..|.+.|++++|+|+++ +||+|+.||.|++|++ .++. ....... .. .|...|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45568999999999999 9999999999999999 8775 2222111 11 2577899999999999
Q ss_pred eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeee
Q 013436 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 262 (443)
+|++++.||.|++||. +++...... +|...|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 122 ~l~~~~~dg~i~i~~~-~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 122 SIVTGVENGELRLWNK-TGALLNVLN----------------FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp EEEEEETTSCEEEEET-TSCEEEEEC----------------CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred EEEEEeCCCeEEEEeC-CCCeeeecc----------------CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 9999999999999994 333322211 35568999999999999999999999999998776544
Q ss_pred E--------------------------------------------------------EeeccCCCeEEEEEeCCCCCEEE
Q 013436 263 L--------------------------------------------------------RILAHTSDVNTVCFGDESGHLIY 286 (443)
Q Consensus 263 ~--------------------------------------------------------~~~~~~~~v~~i~~~~~~~~~l~ 286 (443)
. .+..|...|.+++|+ +++++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~ 263 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLL 263 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-TTTTEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC-CCCCEEE
Confidence 3 333577889999998 7888999
Q ss_pred EeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccc
Q 013436 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366 (443)
Q Consensus 287 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (443)
+++.|+.|++||++ .++.+..+.+|...|.+++|+|++ +|++++.|+.|++||+++
T Consensus 264 ~~~~d~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~------------------- 319 (425)
T 1r5m_A 264 SASDDGTLRIWHGG----NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ------------------- 319 (425)
T ss_dssp EEETTSCEEEECSS----SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-------------------
T ss_pred EEcCCCEEEEEECC----CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-------------------
Confidence 99999999999998 778888888999999999999999 999999999999999988
Q ss_pred cccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
.+.+..+..|..... .+ .|+|++++|++++.||.|++||+.+++
T Consensus 320 ---------------~~~~~~~~~~~~~i~--~~----~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 320 ---------------NTLLALSIVDGVPIF--AG----RISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ---------------TEEEEEEECTTCCEE--EE----EECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred ---------------CcEeEecccCCccEE--EE----EEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 556777777764332 23 456689999999999999999999887
No 58
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-34 Score=268.26 Aligned_cols=266 Identities=17% Similarity=0.177 Sum_probs=211.3
Q ss_pred ccCCCCceEEEEECCC----CCEEEEEECCCeEEEEECCCCeEEEEee--ecCCccceEEEEEECCC----CCeEEEEEC
Q 013436 120 VDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDI--LAKSLRWTVTDTSLSPD----QRHLVYASM 189 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~----~~~l~~g~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~i~~s~~----~~~l~~~~~ 189 (443)
..+|.++|++++|+|+ ...+++++.++.|++||+.++..+.... ....|...|.+++|+|+ +.+|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4589999999999984 4567777777899999999775554333 22336678999999999 669999999
Q ss_pred CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEe---
Q 013436 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI--- 265 (443)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~--- 265 (443)
||.|++||+.+++...... +|...|.+++|+| ++.+|++|+.||.|++||+++++.+..+
T Consensus 94 dg~i~v~d~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYV----------------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCEEEEECTTTCCEEEEEE----------------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCEEEEEEchhceEeeeec----------------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 9999999999887644332 3566899999999 9999999999999999999999988888
Q ss_pred eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeee----------------------------ecCCCC
Q 013436 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----------------------------LMGHLE 317 (443)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------------------------~~~~~~ 317 (443)
..|...|.+++|+ +++++|++++.|+.|++||++ .++.... ..+|..
T Consensus 158 ~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 158 EGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRIN----SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp TSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESC----SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred ccccCceeEEEEC-CCCCEEEEecCCCCEEEEECC----CCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 6899999999998 789999999999999999998 4433332 234999
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeee
Q 013436 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (443)
Q Consensus 318 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (443)
.|.+++|+ +++|++++.|+.|++||+++......... ........+..+.+|....
T Consensus 233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~v-- 288 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIK--------------------PSESNVTILGRFDYSQCDI-- 288 (366)
T ss_dssp CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCC--------------------TTCCCEEEEEEEECSSCCS--
T ss_pred eEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccc--------------------cCCcchheeccccccCCcE--
Confidence 99999998 77999999999999999988543221100 0001124466777776433
Q ss_pred eEEEecCCccCC--ccEEEEeeCCCeEEEEEccChhhhh
Q 013436 398 IRCHFSPVYSTG--QKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 398 ~~~~~~~~~s~d--~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
....|+|+ +++|++|+.||.|++||+.+++.+.
T Consensus 289 ----~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 323 (366)
T 3k26_A 289 ----WYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK 323 (366)
T ss_dssp ----SCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG
T ss_pred ----EEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc
Confidence 34457778 9999999999999999999987554
No 59
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.6e-33 Score=264.81 Aligned_cols=269 Identities=17% Similarity=0.223 Sum_probs=217.5
Q ss_pred ccccceeecccccCCCcc--ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC
Q 013436 102 ADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (443)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~ 179 (443)
.+....+|.....+.... +.+|...|++++|+|+|++||+|+.||.|+|||+.+++.+.. ..+|...+.++++
T Consensus 123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~---~~~h~~~v~~~s~-- 197 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN---MTSHSARVGSLSW-- 197 (420)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEE--
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE---EeCCCCceEEEee--
Confidence 345555676655554443 457888999999999999999999999999999999976654 5678888988877
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 013436 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (443)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 259 (443)
++..|++++.|+.+++||.......... . .+|...+..+.|+|++.++++++.|+.|++||..++
T Consensus 198 ~~~~l~sgs~d~~i~~~d~~~~~~~~~~--~-------------~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 198 NSYILSSGSRSGHIHHHDVRVAEHHVAT--L-------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp ETTEEEEEETTSEEEEEETTSSSCEEEE--E-------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred CCCEEEEEeCCCceeEeeecccceeeEE--e-------------cccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 5679999999999999998765432110 0 146668999999999999999999999999999876
Q ss_pred e----eeEEeeccCCCeEEEEEeCCCCCEEEEe--eCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEE
Q 013436 260 K----LSLRILAHTSDVNTVCFGDESGHLIYSG--SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS 333 (443)
Q Consensus 260 ~----~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 333 (443)
+ .+.....|...|.+++|+|.+..+++++ +.|+.|++||++ ++.+...+..| ..+.++.|+|+++.+++
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~----t~~~~~~~~~~-~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACLSAVDAH-SQVCSILWSPHYKELIS 337 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT----TTEEEEEEECS-SCEEEEEEETTTTEEEE
T ss_pred cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC----ccccceeeccc-cceeeeeecCCCCeEEE
Confidence 4 3456778999999999998788888764 579999999998 78888877755 57899999999999887
Q ss_pred Ee--CCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCcc
Q 013436 334 NG--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (443)
Q Consensus 334 ~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 411 (443)
++ .|+.|+|||+++ .+.+..+.+|...+. .+ +|+|||+
T Consensus 338 ~sg~~d~~I~iwd~~~----------------------------------~~~v~~l~gH~~~V~--~l----~~spdg~ 377 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPT----------------------------------MAKVAELKGHTSRVL--SL----TMSPDGA 377 (420)
T ss_dssp EECTTTCCEEEEETTT----------------------------------CCEEEEECCCSSCEE--EE----EECTTSS
T ss_pred EEecCCCEEEEEECCC----------------------------------CcEEEEEcCCCCCEE--EE----EEcCCCC
Confidence 65 689999999988 567889999985433 33 4667999
Q ss_pred EEEEeeCCCeEEEEEccChhhhhH
Q 013436 412 YIYTGSHDSCVYVYDLVSIQILFC 435 (443)
Q Consensus 412 ~l~tg~~dg~v~iwd~~~g~~~~~ 435 (443)
+|+||+.||+|+|||+.+......
T Consensus 378 ~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 378 TVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp CEEEEETTTEEEEECCSCSSCC--
T ss_pred EEEEEecCCeEEEEECCCCCccch
Confidence 999999999999999987654433
No 60
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-35 Score=295.14 Aligned_cols=264 Identities=17% Similarity=0.143 Sum_probs=208.4
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC--CCeEEEEECCCeEEE
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHI 195 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~~dg~i~i 195 (443)
..+.+|.+.|++++|+|++++|++|+.||.|+|||+.++. ........+|..+|++++|+|+ +++|++++.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 4578999999999999999999999999999999998542 2233356788999999999988 999999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC--CCEEEEEecCCeEEEEECCCC--eeeEEeeccCCC
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN--KLSLRILAHTSD 271 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~ 271 (443)
||+.+++....... .+|...|.+++|+|+ +..+++|+.||.|++||++++ .....+..|...
T Consensus 82 wd~~~~~~~~~~~~--------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 82 WKEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147 (753)
T ss_dssp EEEETTEEEEEEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred EECCCCcccccccc--------------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence 99988753222221 136669999999999 999999999999999999887 344566789999
Q ss_pred eEEEEEeCC------------CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCC---CCEEEEEeC
Q 013436 272 VNTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGK 336 (443)
Q Consensus 272 v~~i~~~~~------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~ 336 (443)
|.+++|+|. ++.++++|+.||.|++||++...........+.+|...|++++|+|+ +.+|++++.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 999999854 58899999999999999998443233667788899999999999999 899999999
Q ss_pred CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEe
Q 013436 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (443)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg 416 (443)
||.|++||+++....... .+.....|.. .+ ++.+|+|+|++|++|
T Consensus 228 Dg~I~iwd~~~~~~~~~~-----------------------------~~~~~~~~~~--~v----~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKK-----------------------------TLLKEEKFPD--VL----WRASWSLSGNVLALS 272 (753)
T ss_dssp SSCEEEEEESSSSSCCBC-----------------------------CBSSSSCCSS--CC----CCEEECTTTCCEEEE
T ss_pred CCEEEEecCCCCCCccee-----------------------------EEeccCCCCC--ce----EEEEEcCCCCEEEEE
Confidence 999999999885321110 0111122332 12 233466799999999
Q ss_pred eCCCeEEEEEccChh
Q 013436 417 SHDSCVYVYDLVSIQ 431 (443)
Q Consensus 417 ~~dg~v~iwd~~~g~ 431 (443)
+.||.|++||+.++.
T Consensus 273 s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 273 GGDNKVTLWKENLEG 287 (753)
T ss_dssp CSSSCEECCBCCSSS
T ss_pred cCCCEEEEEecCCCC
Confidence 999999999998543
No 61
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=254.38 Aligned_cols=274 Identities=15% Similarity=0.211 Sum_probs=207.2
Q ss_pred cccccCCCccccC--CCC--ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE
Q 013436 110 RYLPVNGPWPVDQ--TTS--RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (443)
Q Consensus 110 ~~~~~~~~~~~~~--h~~--~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 185 (443)
+++|..+...|+. +.+ -+.+++||+++ +||+| .|++|+|||+.+++.+.. .....|...|++++|+|++++|+
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCCEEE
Confidence 3445555444432 222 24789999986 77776 589999999999976654 34567888899999999999999
Q ss_pred EEECCCeEEEEECCCCceeccccceecc-------cCc---------e---------eeccCCCCceecEEEEEEeCCCC
Q 013436 186 YASMSPIVHIVDVGSGTMESLANVTEIH-------DGL---------D---------FSAADDGGYSFGIFSLKFSTDGR 240 (443)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~---------~---------~~~~~~~~~~~~i~~l~~~~~~~ 240 (443)
+|+.||.|++||+.+++........... ... . .......+|...+..+.++++++
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 163 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred EEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC
Confidence 9999999999999998765432211000 000 0 00001135777899999999999
Q ss_pred EEEEEecCCeEEEEECCCCee----eEEeeccCCCeEEEEEeCCCCCEE--EEeeCCCeEEEEecccCCCCCceeeeecC
Q 013436 241 ELVAGSSDDCIYVYDLEANKL----SLRILAHTSDVNTVCFGDESGHLI--YSGSDDNLCKVWDRRCLNVKGKPAGVLMG 314 (443)
Q Consensus 241 ~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l--~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 314 (443)
+|++++.||.|++||+++++. ......+...|.++.+++.+...+ ++++.++.|++||.+ ....... ..
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~----~~~~~~~-~~ 238 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACLSA-VD 238 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT----TCCEEEE-EE
T ss_pred EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc----ccccccc-cc
Confidence 999999999999999988653 345557888999999987666665 456788999999997 5554444 44
Q ss_pred CCCCeEEEEECCCCCEEEEEe--CCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccc
Q 013436 315 HLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS 392 (443)
Q Consensus 315 ~~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (443)
+...+..+.|+|++..+++++ .|+.|+|||+++ .+.+..+.+|.
T Consensus 239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~----------------------------------~~~~~~l~gH~ 284 (318)
T 4ggc_A 239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT----------------------------------MAKVAELKGHT 284 (318)
T ss_dssp CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT----------------------------------CCEEEEECCCS
T ss_pred ceeeeeeeeecccccceEEEEEcCCCEEEEEECCC----------------------------------CcEEEEEcCCC
Confidence 677899999999999887655 799999999998 56788999998
Q ss_pred eeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 393 VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 393 ~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
..+.. + +|+|||++|+||+.||+|+|||+.+..
T Consensus 285 ~~V~~--l----~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 285 SRVLS--L----TMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp SCEEE--E----EECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCEEE--E----EEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 54333 2 466799999999999999999997653
No 62
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=265.96 Aligned_cols=287 Identities=13% Similarity=0.134 Sum_probs=211.6
Q ss_pred ccceeecccccCCCc-cccCCCCceEEEEECCC---CCEEEEEECCCeEEEEECCCCe-EEEEeeecCCccceEEEEE--
Q 013436 104 CCHMLSRYLPVNGPW-PVDQTTSRAYVSQFSAD---GSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTS-- 176 (443)
Q Consensus 104 ~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~s~~---~~~l~~g~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~i~-- 176 (443)
....++.....+... ...+|...|.+++|+|+ +++|++|+.||.|++||+.++. .+. ....|...|.+++
T Consensus 44 ~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~ 120 (357)
T 3i2n_A 44 GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGI 120 (357)
T ss_dssp EEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEE
T ss_pred cEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeec
Confidence 344455544333322 23479999999999999 6999999999999999999875 332 3557888999995
Q ss_pred ----ECCCCCeEEEEECCCeEEEEECCCCc-eeccccceecccCceeeccCCCCceecEEEEE----EeCCCCEEEEEec
Q 013436 177 ----LSPDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLK----FSTDGRELVAGSS 247 (443)
Q Consensus 177 ----~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~----~~~~~~~l~~~~~ 247 (443)
|+|++++|++++.|+.|++||+.++. ......... ..+...+.+++ |+|++++|++++.
T Consensus 121 ~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 188 (357)
T 3i2n_A 121 GGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ------------GENKRDCWTVAFGNAYNQEERVVCAGYD 188 (357)
T ss_dssp SGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT------------TSCCCCEEEEEEECCCC-CCCEEEEEET
T ss_pred cccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC------------CCCCCceEEEEEEeccCCCCCEEEEEcc
Confidence 57899999999999999999998875 222221111 11233788888 7889999999999
Q ss_pred CCeEEEEECCCCeeeEEeeccCCCeEEEEEeCC--CCCEEEEeeCCCeEEEEecccCCCCCceeeee-----cCCCCCeE
Q 013436 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-----MGHLEGIT 320 (443)
Q Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~v~ 320 (443)
||.|++||+++++... ...|...|.+++|+|. ++.+|++++.||.|++||++ ....+..+ .+|...|+
T Consensus 189 d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~~~~~v~ 263 (357)
T 3i2n_A 189 NGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR----TQHPTKGFASVSEKAHKSTVW 263 (357)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE----EEETTTEEEEEEEECCSSCEE
T ss_pred CCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc----CCCcccceeeeccCCCcCCEE
Confidence 9999999999998644 4578899999999832 88999999999999999998 44444433 38999999
Q ss_pred EEEECCCCC-EEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCccc-CCCCeeEEEEeccceeeeee
Q 013436 321 FIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK-HPCDQSVATYKGHSVLRTLI 398 (443)
Q Consensus 321 ~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 398 (443)
+++|+|+++ +|++++.||.|++||++.......... ++.... ......+..+.+|...+.
T Consensus 264 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~v~-- 325 (357)
T 3i2n_A 264 QVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS----------------EGIEMGVAGSVSLLQNVTLSTQPIS-- 325 (357)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT----------------TSCCCCCCCEEEEEEEEECCSSCEE--
T ss_pred EEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC----------------CCCccccccccceeeccccCCCCee--
Confidence 999999998 899999999999999987554322111 000000 011245777888874333
Q ss_pred EEEecCCccCCccEEE-EeeCCCeEEEEEccChhh
Q 013436 399 RCHFSPVYSTGQKYIY-TGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 399 ~~~~~~~~s~d~~~l~-tg~~dg~v~iwd~~~g~~ 432 (443)
.+ .|+|++++|+ +|+.||.|++||+.+.++
T Consensus 326 ~~----~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 326 SL----DWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EE----EECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EE----EEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 33 3566899888 899999999999988765
No 63
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-34 Score=266.35 Aligned_cols=264 Identities=13% Similarity=0.102 Sum_probs=207.6
Q ss_pred ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC-eEEEEECCCeEEEEEC
Q 013436 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV 198 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~ 198 (443)
..+|.+.|++++|+|++++|++|+.|+.|+||++.++...........|...|.+++|+|+++ +|++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 457999999999999999999999999999999988751111223347788999999999999 9999999999999999
Q ss_pred -CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCC---------CeeeEEeecc
Q 013436 199 -GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---------NKLSLRILAH 268 (443)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~ 268 (443)
.+++...... ..|...|.+++|+| +..|++++.|+.|++||+++ ++++..+. |
T Consensus 87 ~~~~~~~~~~~---------------~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~ 149 (342)
T 1yfq_A 87 IGSPSFQALTN---------------NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-V 149 (342)
T ss_dssp SSSSSEEECBS---------------CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred ccCCceEeccc---------------cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-e
Confidence 8775422111 01566899999999 99999999999999999987 76666665 8
Q ss_pred CCCeEEEEEeCCCCCEEEEeeCCCeEEEEeccc-CCCCCceeeeecCCCCCeEEEEECC-CCCEEEEEeCCCCEEEEeCC
Q 013436 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC-LNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~ 346 (443)
...|.+++|+ +++ +++++.|+.|++||++. .. .........|...|.+++|+| ++++|++++.||.|++|+++
T Consensus 150 ~~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 150 KNKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLCED--DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp CCCEEEEEEC-SSE--EEEEESTTEEEEEESSCCTT--CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred CCceEEEEec-CCc--EEEEeCCCeEEEEECCcccc--ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 8999999997 444 89999999999999983 21 223344557888999999999 99999999999999999998
Q ss_pred CCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccce-------eeeeeEEEecCCccCCccEEEEeeCC
Q 013436 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-------LRTLIRCHFSPVYSTGQKYIYTGSHD 419 (443)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~d~~~l~tg~~d 419 (443)
....... ......+..|.. ...+..+ .|+|++++|++|+.|
T Consensus 225 ~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~----~~s~~~~~l~~~~~d 272 (342)
T 1yfq_A 225 DQGDDYN----------------------------SSKRFAFRCHRLNLKDTNLAYPVNSI----EFSPRHKFLYTAGSD 272 (342)
T ss_dssp TTCCSTT----------------------------CTTCEEEECCCCCTTCCSSCCCEEEE----EECTTTCCEEEEETT
T ss_pred CCCcccc----------------------------cccceeeecccccccccccceeEEEE----EEcCCCCEEEEecCC
Confidence 7400000 123455666643 1133333 456689999999999
Q ss_pred CeEEEEEccChhhhhHhH
Q 013436 420 SCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 420 g~v~iwd~~~g~~~~~~~ 437 (443)
|.|++||+.+++.+..++
T Consensus 273 g~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 273 GIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp SCEEEEETTTTEEEEECC
T ss_pred ceEEEEcCccHhHhhhhh
Confidence 999999999998776554
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.6e-33 Score=267.45 Aligned_cols=279 Identities=17% Similarity=0.273 Sum_probs=220.6
Q ss_pred ccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEEC--C
Q 013436 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--P 179 (443)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s--~ 179 (443)
.+....++.....+....+.+|.+.|.+++|+|++ +|++|+.||+|++||+.++..+.. ..+|...|.+++|+ +
T Consensus 140 ~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~---~~~h~~~v~~l~~~~~~ 215 (464)
T 3v7d_B 140 DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV---FEGHNSTVRCLDIVEYK 215 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEEESS
T ss_pred CCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE---ECCCCCccEEEEEecCC
Confidence 34455567666667777889999999999999988 999999999999999999866553 55788899999998 5
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccceeccc-------CceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEE
Q 013436 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD-------GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (443)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 252 (443)
++.+|++++.|+.|++||+.++............. ...+......+|...|.++ +++++++++|+.||.|+
T Consensus 216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~ 293 (464)
T 3v7d_B 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLI 293 (464)
T ss_dssp SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEE
T ss_pred CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEE
Confidence 78899999999999999999876433221110000 0000011123566677776 56789999999999999
Q ss_pred EEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEE
Q 013436 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 332 (443)
Q Consensus 253 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 332 (443)
+||+++++++..+.+|...|.+++|+ ++++++++|+.|+.|++||++ +++++..+.+|...|.+++|+ +.+|+
T Consensus 294 vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~~~~~--~~~l~ 366 (464)
T 3v7d_B 294 VWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLE----NGELMYTLQGHTALVGLLRLS--DKFLV 366 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEC--SSEEE
T ss_pred EEECCCCcEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECC----CCcEEEEEeCCCCcEEEEEEc--CCEEE
Confidence 99999999999999999999999998 789999999999999999998 889999999999999999997 57999
Q ss_pred EEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccE
Q 013436 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (443)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 412 (443)
+++.||.|++||+++.. ....+. +...... . .|+|++++
T Consensus 367 s~s~dg~v~vwd~~~~~----------------------------------~~~~~~-~~~~~~~--~----~~~~~~~~ 405 (464)
T 3v7d_B 367 SAAADGSIRGWDANDYS----------------------------------RKFSYH-HTNLSAI--T----TFYVSDNI 405 (464)
T ss_dssp EEETTSEEEEEETTTCC----------------------------------EEEEEE-CTTCCCE--E----EEEECSSE
T ss_pred EEeCCCcEEEEECCCCc----------------------------------eeeeec-CCCCccE--E----EEEeCCCE
Confidence 99999999999998732 222222 2211111 2 24558999
Q ss_pred EEEeeCCCeEEEEEccChhhhhH
Q 013436 413 IYTGSHDSCVYVYDLVSIQILFC 435 (443)
Q Consensus 413 l~tg~~dg~v~iwd~~~g~~~~~ 435 (443)
|++|+ ||.|++||+.+|+++..
T Consensus 406 l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 406 LVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp EEEEE-TTEEEEEETTTCCEEES
T ss_pred EEEec-CCeEEEEECCCCcEEeh
Confidence 99998 99999999999998754
No 65
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.5e-34 Score=264.17 Aligned_cols=257 Identities=16% Similarity=0.142 Sum_probs=202.4
Q ss_pred ccccCCCccccCCCCceEEEEECCC---CCEEEEEECCCeEEEEECCC-CeEEEEeeecCCccceEEEEEECCCCCeEEE
Q 013436 111 YLPVNGPWPVDQTTSRAYVSQFSAD---GSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (443)
Q Consensus 111 ~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~~g~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 186 (443)
..+.+....+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+.. ....|...|.+++|+|++++|++
T Consensus 26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK--AQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE--EEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE--EeccccCCEEEEEECcCCCEEEE
Confidence 3455566678999999999999999 69999999999999999997 544422 34568889999999999999999
Q ss_pred EECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEE--eCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 013436 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGSSDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 264 (443)
++.||.|++||+.+++..... +|...|.+++| +|++.+|++++.||.|++||+++++.+..
T Consensus 104 ~~~dg~v~iwd~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQIA-----------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp EETTSEEEEEETTTTEEEEEE-----------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred EcCCCcEEEEEcCCCCceeec-----------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 999999999999988765422 25558999999 88999999999999999999999887766
Q ss_pred eeccC-----------------------------------------CCeEEEEEeCCCC----CEEEEeeCCCeEEEEec
Q 013436 265 ILAHT-----------------------------------------SDVNTVCFGDESG----HLIYSGSDDNLCKVWDR 299 (443)
Q Consensus 265 ~~~~~-----------------------------------------~~v~~i~~~~~~~----~~l~~~~~d~~i~iwd~ 299 (443)
+..+. ..+.++++. .+. ..+++++.|+.|++||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~ 245 (368)
T 3mmy_A 167 LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF-KDKQNKPTGFALGSIEGRVAIHYI 245 (368)
T ss_dssp EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE-ECTTSCEEEEEEEETTSEEEEEES
T ss_pred EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEc-ccCCCCCCeEEEecCCCcEEEEec
Confidence 65432 223334333 222 23899999999999999
Q ss_pred ccCCCCCceeeeecCCCC------------CeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCccccc
Q 013436 300 RCLNVKGKPAGVLMGHLE------------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 367 (443)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (443)
+... ....+..+.+|.. .|++++|+|++++|++++.||.|++||+++
T Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-------------------- 304 (368)
T 3mmy_A 246 NPPN-PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA-------------------- 304 (368)
T ss_dssp SCSC-HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT--------------------
T ss_pred CCCC-ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC--------------------
Confidence 8321 1155667777766 799999999999999999999999999998
Q ss_pred ccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 368 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
.+.+..+.+|..... .+ +|+|+|++|++|+.|+..+.|++.
T Consensus 305 --------------~~~~~~~~~~~~~v~--~~----~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 305 --------------RTKLKTSEQLDQPIS--AC----CFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp --------------TEEEEECCCCSSCEE--EE----EECTTSSCEEEEECCCSTTCGGGC
T ss_pred --------------CcEEEEecCCCCCce--EE----EECCCCCeEEEEeccccccccccc
Confidence 566777777764333 33 466699999999998865555543
No 66
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-35 Score=280.85 Aligned_cols=257 Identities=11% Similarity=0.037 Sum_probs=191.7
Q ss_pred CCCceEEEEECCCC---------CEEEE-------------------EECCCeEEEEECCCCeEEE-EeeecCCccceEE
Q 013436 123 TTSRAYVSQFSADG---------SLFVA-------------------GFQASQIRIYDVERGWKIQ-KDILAKSLRWTVT 173 (443)
Q Consensus 123 h~~~v~~~~~s~~~---------~~l~~-------------------g~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~ 173 (443)
+.+.|++++|+|++ ++||+ ++.|++|+|||+.++.... .......|...|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 56777888888775 56665 5578899999998764321 1122345667899
Q ss_pred EEEECCC------CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec
Q 013436 174 DTSLSPD------QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (443)
Q Consensus 174 ~i~~s~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 247 (443)
+++|+|+ +.+||+++.||+|++||+.++......... ... ......+|...|.+++|+|++ .|++|+.
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~-~~~----p~~~l~~h~~~v~sv~~s~~~-~lasgs~ 285 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM-CEK----PSLTLSLADSLITTFDFLSPT-TVVCGFK 285 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC-CCS----CSEEECCTTTCEEEEEESSSS-EEEEEET
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee-ecC----ceEEEEcCCCCEEEEEecCCC-eEEEEeC
Confidence 9999997 579999999999999999876432100000 000 000112466799999999864 7999999
Q ss_pred CCeEEEEECCCC-eeeEEeeccCCCeEEE--EEeCCCC-CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCC--CeEE
Q 013436 248 DDCIYVYDLEAN-KLSLRILAHTSDVNTV--CFGDESG-HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITF 321 (443)
Q Consensus 248 dg~i~iwd~~~~-~~~~~~~~~~~~v~~i--~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~ 321 (443)
||+|++||++++ .+...+.+|...|+++ +| ++++ ++|++|+.|++|+|||++ .++++..+.+|.. .|.+
T Consensus 286 DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~-s~~g~~~laS~S~D~tvklWD~~----~~~~~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 286 NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY-SDFEDTVVSTVAVDGYFYIFNPK----DIATTKTTVSRFRGSNLVP 360 (524)
T ss_dssp TSEEEEEETTBCSSCSEEEECSSSCEEEEEEEC-CTTSCCEEEEEETTSEEEEECGG----GHHHHCEEEEECSCCSCCC
T ss_pred CCEEEEEECCCCCCceEEeecccccEEEEEEEc-CCCCCeEEEEeccCCeEEEEECC----CCCcccccccccccCcccc
Confidence 999999999976 4456688999999999 45 4776 899999999999999998 6666666766653 4789
Q ss_pred EEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEE
Q 013436 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (443)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (443)
++|+|+++.|++++.|++|++||+++. ..+..+.+|...+.
T Consensus 361 v~fsp~~~~l~s~~~d~tv~lwd~~~~----------------------------------~~~~~l~gH~~~V~----- 401 (524)
T 2j04_B 361 VVYCPQIYSYIYSDGASSLRAVPSRAA----------------------------------FAVHPLVSRETTIT----- 401 (524)
T ss_dssp EEEETTTTEEEEECSSSEEEEEETTCT----------------------------------TCCEEEEECSSCEE-----
T ss_pred eEeCCCcCeEEEeCCCCcEEEEECccc----------------------------------ccceeeecCCCceE-----
Confidence 999999999999999999999999983 33556778874333
Q ss_pred ecCCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 402 ~~~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
+.+|||+|++|++|+.||+|++||+..+
T Consensus 402 -sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 402 -AIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp -EEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred -EEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 3346779999999999999999998654
No 67
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.4e-34 Score=261.97 Aligned_cols=256 Identities=14% Similarity=0.152 Sum_probs=199.4
Q ss_pred cccCCCCceEEEEECCCCCEEE-EEEC---CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC---CCeEEEEECCC
Q 013436 119 PVDQTTSRAYVSQFSADGSLFV-AGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD---QRHLVYASMSP 191 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~-~g~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~~~~~dg 191 (443)
.+.+|...|++++|+|++..++ +|+. |+.|+|||+.++...... ...|...|.+++|+|+ +++|++++.||
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR--EIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE--EEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee--eecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 4567999999999999996554 5555 899999999988654332 2257778999999998 69999999999
Q ss_pred eEEEEECCCCc-eeccccceecccCceeeccCCCCceecEEEEEE------eCCCCEEEEEecCCeEEEEECCCCe-eeE
Q 013436 192 IVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKF------STDGRELVAGSSDDCIYVYDLEANK-LSL 263 (443)
Q Consensus 192 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~------~~~~~~l~~~~~dg~i~iwd~~~~~-~~~ 263 (443)
.|++||+.+++ ..... .+|...|.++.| +|++++|++++.||.|++||+++++ .+.
T Consensus 91 ~i~iwd~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSV----------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp CEEEECTTSCSSCSEEE----------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred eEEEEeCCCCCccEEEE----------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 99999999876 32211 146668999955 6789999999999999999999886 677
Q ss_pred EeeccCC----CeEEEEEe---CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECC---CCCEEEE
Q 013436 264 RILAHTS----DVNTVCFG---DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG---DGRYLIS 333 (443)
Q Consensus 264 ~~~~~~~----~v~~i~~~---~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s 333 (443)
.+..|.. .+.+++|+ .++++++++++.|+.|++||++ .++.. ....|...|.+++|+| ++.+|++
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR----NMALR-WETNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT----TTEEE-EEEECSSCEEEEEESCSSSSCCEEEE
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc----cCcee-eecCCCCceEEEEcCCCCCCCCEEEE
Confidence 7766554 89999842 2789999999999999999998 55554 4466889999999999 9999999
Q ss_pred EeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCcc-E
Q 013436 334 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-Y 412 (443)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~ 412 (443)
++.||.|++||+++....... ....+.+|..... .+ .|+|+++ +
T Consensus 230 ~~~dg~i~i~d~~~~~~~~~~-----------------------------~~~~~~~~~~~v~--~~----~~~~~~~~~ 274 (357)
T 3i2n_A 230 TSLEGKFHVFDMRTQHPTKGF-----------------------------ASVSEKAHKSTVW--QV----RHLPQNREL 274 (357)
T ss_dssp EESTTEEEEEEEEEEETTTEE-----------------------------EEEEEECCSSCEE--EE----EEETTEEEE
T ss_pred ECCCCeEEEEeCcCCCcccce-----------------------------eeeccCCCcCCEE--EE----EECCCCCcE
Confidence 999999999999874332111 1223446664332 33 3556888 8
Q ss_pred EEEeeCCCeEEEEEccChhh
Q 013436 413 IYTGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 413 l~tg~~dg~v~iwd~~~g~~ 432 (443)
|++|+.||.|++||+.++..
T Consensus 275 l~~~~~dg~i~iwd~~~~~~ 294 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYPIQ 294 (357)
T ss_dssp EEEEETTSEEEEEEEECCSC
T ss_pred EEEEeCCCcEEEeecCCCcc
Confidence 99999999999999987643
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.4e-32 Score=261.79 Aligned_cols=246 Identities=22% Similarity=0.312 Sum_probs=209.0
Q ss_pred ccccCCCCce-EEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 118 WPVDQTTSRA-YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 118 ~~~~~h~~~v-~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
..+.+|...| .++.+ ++++|++|+.||.|++||+.+++.+.. ..+|...|.+++|+|++ .|++++.||.|++|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~---~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEE---EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 4678998885 66666 577999999999999999999866553 55888999999999988 89999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEe--CCCCEEEEEecCCeEEEEECCCCee-------------
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEANKL------------- 261 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~l~~~~~dg~i~iwd~~~~~~------------- 261 (443)
|+.+++...... +|...|.+++|+ +++.++++|+.||.|++||++++..
T Consensus 189 d~~~~~~~~~~~----------------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 189 DIKKGCCTHVFE----------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp ETTTTEEEEEEC----------------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred ECCCCcEEEEEC----------------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 999887544332 466689999999 5778999999999999999987652
Q ss_pred ----------eEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEE
Q 013436 262 ----------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331 (443)
Q Consensus 262 ----------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 331 (443)
+..+.+|...|.++. ++++++++++.|+.|++||++ .++++..+.+|...|.+++|+|++++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred eeccCCCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 445668888888874 457899999999999999998 889999999999999999999999999
Q ss_pred EEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCcc
Q 013436 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (443)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 411 (443)
++++.||.|++||+++ ++.+..+.+|......+ .+ +++
T Consensus 326 ~sg~~dg~i~vwd~~~----------------------------------~~~~~~~~~h~~~v~~~--~~------~~~ 363 (464)
T 3v7d_B 326 ISASMDTTIRIWDLEN----------------------------------GELMYTLQGHTALVGLL--RL------SDK 363 (464)
T ss_dssp EEEETTSCEEEEETTT----------------------------------TEEEEEECCCSSCEEEE--EE------CSS
T ss_pred EEEeCCCcEEEEECCC----------------------------------CcEEEEEeCCCCcEEEE--EE------cCC
Confidence 9999999999999988 56788888888654433 23 357
Q ss_pred EEEEeeCCCeEEEEEccChhhhh
Q 013436 412 YIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 412 ~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
+|++|+.||.|++||+.+++...
T Consensus 364 ~l~s~s~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDANDYSRKF 386 (464)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCcEEEEECCCCceee
Confidence 99999999999999999876543
No 69
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-32 Score=295.00 Aligned_cols=280 Identities=21% Similarity=0.260 Sum_probs=206.3
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
...+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++..+.. ..+|...|.+++|+|++++|++++.|+.|++|
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE---eccCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 345679999999999999999999999999999999999876654 45788899999999999999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC--CCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 274 (443)
|+.+++...... +|...|.+++|+| ++.++++|+.|+.|++||+++++++..+.+|...|++
T Consensus 685 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 685 DSATGKLVHTYD----------------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred ECCCCceEEEEc----------------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence 999887654332 3666899999999 5568999999999999999999999999999999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC-------------CCCCeEEEEECCCCCEEEEEeCCCCEE
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------------HLEGITFIDSRGDGRYLISNGKDQAIK 341 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~s~~~dg~i~ 341 (443)
++|+ ++++++++++.||.|++||++ .+.....+.. +...+.+++|+|+++.+++++ ++.+.
T Consensus 749 ~~~s-p~~~~l~s~s~dg~v~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~ 822 (1249)
T 3sfz_A 749 CRFS-PDDELLASCSADGTLRLWDVR----SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL 822 (1249)
T ss_dssp EEEC-SSTTEEEEEESSSEEEEEEGG----GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred EEEe-cCCCEEEEEECCCeEEEEeCC----CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence 9998 789999999999999999997 3333322211 112344555555555555444 34455
Q ss_pred EEeCCCCCCccccCCcccccCcccccccCCCCCCcccC------------CCCeeEEEEeccceeeeeeEEEecCCccCC
Q 013436 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH------------PCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (443)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 409 (443)
+||+.+.........+ ....+..+.+++++..+.. .....+..+.+|...+. +..|+|+
T Consensus 823 ~~d~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~------~v~~spd 893 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTG---HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH------GVMFSPD 893 (1249)
T ss_dssp EEETTTCCEEEEEECS---SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE------EEEECTT
T ss_pred EEEecCCCceeEEcCC---CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE------EEEECCC
Confidence 5555544433222111 1111222222222222111 11456677777774333 2346669
Q ss_pred ccEEEEeeCCCeEEEEEccCh
Q 013436 410 QKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 410 ~~~l~tg~~dg~v~iwd~~~g 430 (443)
|++|++++.||.|++||+.++
T Consensus 894 g~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 894 GSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp SSEEEEEETTSCEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEEcccc
Confidence 999999999999999998754
No 70
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.6e-33 Score=250.94 Aligned_cols=222 Identities=21% Similarity=0.271 Sum_probs=185.2
Q ss_pred EEEEeeecCCccceEEEEEECCCC-CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEe
Q 013436 158 KIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (443)
Q Consensus 158 ~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 236 (443)
.+.....+.+|...|.+++|+|++ ++|++++.|++|++|++............ ...+|...|.+++|+
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~-----------~~~~h~~~v~~~~~s 74 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-----------SFKGHSHIVQDCTLT 74 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEE-----------EEECCSSCEEEEEEC
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccce-----------EEeCCcccEEEEEEC
Confidence 333444677999999999999965 89999999999999998643221100000 112577799999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC
Q 013436 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (443)
Q Consensus 237 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 316 (443)
|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+ +++.+|++|+.|+.|++||++ +.++..+.+|.
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~-----~~~~~~~~~h~ 148 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK-----GQCLATLLGHN 148 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETT-----SCEEEEECCCS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECC-----CCeEEEEeccC
Confidence 999999999999999999999999999999999999999997 889999999999999999995 56788889999
Q ss_pred CCeEEEEECCC------CCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEec
Q 013436 317 EGITFIDSRGD------GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (443)
Q Consensus 317 ~~v~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (443)
..|.++.|+|. +..|++++.|+.|++||+++ .+....+.+
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~----------------------------------~~~~~~~~~ 194 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ----------------------------------FQIEADFIG 194 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTT----------------------------------TEEEEEECC
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc----------------------------------chhheeecC
Confidence 99999999985 45899999999999999987 455677888
Q ss_pred cceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 391 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 391 ~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
|...+.. + +|+|+|++|++|+.||.|++||+.+++.+..+
T Consensus 195 h~~~v~~--~----~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 195 HNSNINT--L----TASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234 (319)
T ss_dssp CCSCEEE--E----EECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred CCCcEEE--E----EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 8754332 2 46669999999999999999999998876544
No 71
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-32 Score=259.80 Aligned_cols=285 Identities=18% Similarity=0.202 Sum_probs=209.7
Q ss_pred cceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE
Q 013436 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 184 (443)
...++..........+.+|...|++++|+|++++|++|+.|+.|++||+.+++.+.. ..+|...|.+++|+|++++|
T Consensus 120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l 196 (420)
T 3vl1_A 120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT---LIGHRATVTDIAIIDRGRNV 196 (420)
T ss_dssp CEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE---EECCSSCEEEEEEETTTTEE
T ss_pred CEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE---EcCCCCcEEEEEEcCCCCEE
Confidence 344555544555556689999999999999999999999999999999998865543 45788899999999999999
Q ss_pred EEEECCCeEEEEECCCCceeccccceecccC----ceeeccC----CCCceecEEEEEEeCCCCEEEEEecCCeEEEEEC
Q 013436 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDG----LDFSAAD----DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 256 (443)
++++.|+.|++||+.+++..........+.. +.+.... ...+...+.+++|+|++++|++|+.||.|++||+
T Consensus 197 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 276 (420)
T 3vl1_A 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV 276 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEET
T ss_pred EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEEC
Confidence 9999999999999998876554432211111 0000000 0012345666777899999999999999999999
Q ss_pred CCCeeeEEee-ccCCCeEEEEEeCCCCC-EEEEeeCCCeEEEEecccCCCCC-ceeeeecC-CCCCeEEEEECCCCCEEE
Q 013436 257 EANKLSLRIL-AHTSDVNTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMG-HLEGITFIDSRGDGRYLI 332 (443)
Q Consensus 257 ~~~~~~~~~~-~~~~~v~~i~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~ 332 (443)
++++.+..+. .|...|.+++|+ +++. +|++|+.||.|++||++ .+ .++..+.. |...|.++.+. ++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~g~~dg~i~vwd~~----~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 350 (420)
T 3vl1_A 277 FSKEQTIQLPSKFTCSCNSLTVD-GNNANYIYAGYENGMLAQWDLR----SPECPVGEFLINEGTPINNVYFA-AGALFV 350 (420)
T ss_dssp TTCCEEEEECCTTSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETT----CTTSCSEEEEESTTSCEEEEEEE-TTEEEE
T ss_pred CCCceeEEcccccCCCceeEEEe-CCCCCEEEEEeCCCeEEEEEcC----CCcCchhhhhccCCCCceEEEeC-CCCEEE
Confidence 9998777665 578899999998 5555 99999999999999998 44 34666665 67788888554 788999
Q ss_pred EEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCcc-
Q 013436 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK- 411 (443)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~- 411 (443)
+++.|+.|++||+........... ......+.+|.. .+..+.|+ |+++
T Consensus 351 s~~~d~~v~iw~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~--~v~~~~~s----~~~~~ 399 (420)
T 3vl1_A 351 SSGFDTSIKLDIISDPESERPAIE-------------------------FETPTFLVSNDD--AVSQFCYV----SDDES 399 (420)
T ss_dssp EETTTEEEEEEEECCTTCCSCEEC-------------------------TTSCEEECCSSC--CCCEEEEE----CCSSS
T ss_pred EecCCccEEEEeccCCCCCcccee-------------------------ccCccEEccCCc--ceEEEEEc----cCCCC
Confidence 999999999999987432211100 011122344443 23334444 4677
Q ss_pred --EEEEeeCCCeEEEEEccC
Q 013436 412 --YIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 412 --~l~tg~~dg~v~iwd~~~ 429 (443)
.|++++.+|.+.+|++..
T Consensus 400 ~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 400 NGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEEEEEETTTEEEEEESCC
T ss_pred cceEEEEcCCceEEEEeccC
Confidence 677777899999999864
No 72
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.5e-33 Score=264.70 Aligned_cols=275 Identities=17% Similarity=0.219 Sum_probs=210.7
Q ss_pred ccccCCCCceEEEEECCC-CCEEEEEECCCeEEEEECCCC-------eEEEEeeecCCccceEEEEEECCCCC-eEEEEE
Q 013436 118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQR-HLVYAS 188 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~-~~~l~~g~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~ 188 (443)
.....|.+.|++++|+|+ +.+||+++.||.|++|++.+. ...........|...|.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345689999999999997 689999999999999999761 01122234557888999999999988 999999
Q ss_pred CCCeEEEEECCCCceeccc-cceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCC---eeeE
Q 013436 189 MSPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN---KLSL 263 (443)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~ 263 (443)
.||.|++|++.++...... .... ...+|...|.+++|+| ++.+|++++.||.|++||++++ +.+.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~----------~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKN----------IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH 271 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSE----------EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE
T ss_pred CCCeEEEEeCCCCCCCCceeccce----------eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee
Confidence 9999999999875321110 0000 1124667899999999 7789999999999999999987 5777
Q ss_pred EeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCC-EEEEEeCCCCEEE
Q 013436 264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKL 342 (443)
Q Consensus 264 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~i 342 (443)
.+..|...|++++|+|....++++|+.||.|++||++. ...++..+..|...|++++|+|+++ +|++++.|+.|+|
T Consensus 272 ~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~---~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 272 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp EEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC---TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred EeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC---CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 88899999999999955556899999999999999982 2567888889999999999999985 6899999999999
Q ss_pred EeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCcc-EEEEeeCCCe
Q 013436 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSC 421 (443)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~tg~~dg~ 421 (443)
||++.......... ......+.+..+.+|... +..+. |+|++. +|++++.||.
T Consensus 349 wd~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~h~~~--v~~~~----~~p~~~~~l~s~s~dg~ 402 (430)
T 2xyi_A 349 WDLSKIGEEQSTED--------------------AEDGPPELLFIHGGHTAK--ISDFS----WNPNEPWIICSVSEDNI 402 (430)
T ss_dssp EEGGGTTCCCCHHH--------------------HHHCCTTEEEECCCCSSC--EEEEE----ECSSSTTEEEEEETTSE
T ss_pred EeCCCCccccCccc--------------------cccCCcceEEEcCCCCCC--ceEEE----ECCCCCCEEEEEECCCC
Confidence 99987332111000 000002346666677643 33333 555788 9999999999
Q ss_pred EEEEEccChh
Q 013436 422 VYVYDLVSIQ 431 (443)
Q Consensus 422 v~iwd~~~g~ 431 (443)
|+||++..+.
T Consensus 403 i~iw~~~~~~ 412 (430)
T 2xyi_A 403 MQVWQMAENV 412 (430)
T ss_dssp EEEEEECHHH
T ss_pred EEEeEccccc
Confidence 9999997543
No 73
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.3e-33 Score=261.87 Aligned_cols=260 Identities=14% Similarity=0.190 Sum_probs=203.8
Q ss_pred CCccccCCCCceEEEEECC-CCCEEEEEECCCeEEEEECCCCeEE----EEeeecCCccceEEEEEECCCC-CeEEEEEC
Q 013436 116 GPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQ-RHLVYASM 189 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~ 189 (443)
....+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++... .......+|...|.+++|+|++ .+|++++.
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 3446789999999999999 9999999999999999999887321 1122355788899999999998 69999999
Q ss_pred CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEe-ecc
Q 013436 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAH 268 (443)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~ 268 (443)
|+.|++||+.+++...... ..+|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|
T Consensus 153 dg~i~iwd~~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 218 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLG--------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH 218 (402)
T ss_dssp TSCEEEEETTTTEEEEEEC--------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred CCEEEEEECCCCCccEEEe--------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCC
Confidence 9999999999886644331 0136668999999999999999999999999999999998888 678
Q ss_pred CCC-eEEEEEeCCCCCEEEEe---eCCCeEEEEecccCCCCCceeeee-cCCCCCeEEEEECCCCCEEEE-EeCCCCEEE
Q 013436 269 TSD-VNTVCFGDESGHLIYSG---SDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLIS-NGKDQAIKL 342 (443)
Q Consensus 269 ~~~-v~~i~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~i 342 (443)
.+. +.++.|+ +++.+|++| +.|+.|++||++... .++... ..|...+.+++|+|++++|++ ++.|+.|++
T Consensus 219 ~~~~~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 219 EGTRPVHAVFV-SEGKILTTGFSRMSERQVALWDTKHLE---EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp CSSSCCEEEEC-STTEEEEEEECTTCCEEEEEEETTBCS---SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred CCCcceEEEEc-CCCcEEEEeccCCCCceEEEEcCcccc---CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 776 8999998 788999998 799999999998322 222222 357788999999999999975 557999999
Q ss_pred EeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeE
Q 013436 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 422 (443)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v 422 (443)
||+.+.+. .+..+..|.....+..+. |+|++.++++ .|+.+
T Consensus 295 ~d~~~~~~---------------------------------~~~~l~~~~~~~~v~~~~----~sp~~~~~~s--~~~~~ 335 (402)
T 2aq5_A 295 FEITSEAP---------------------------------FLHYLSMFSSKESQRGMG----YMPKRGLEVN--KCEIA 335 (402)
T ss_dssp EEECSSTT---------------------------------CEEEEEEECCSSCCSEEE----ECCGGGSCGG--GTEEE
T ss_pred EEecCCCc---------------------------------ceEeecccccCCcccceE----Eeccccccee--cceeE
Confidence 99987431 133444443223344444 5558888764 56799
Q ss_pred EEEEccChhh
Q 013436 423 YVYDLVSIQI 432 (443)
Q Consensus 423 ~iwd~~~g~~ 432 (443)
++|++.++++
T Consensus 336 ~~~~l~~~~~ 345 (402)
T 2aq5_A 336 RFYKLHERKC 345 (402)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCcE
Confidence 9999987653
No 74
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.4e-32 Score=258.44 Aligned_cols=268 Identities=22% Similarity=0.285 Sum_probs=214.1
Q ss_pred cccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC
Q 013436 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (443)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 182 (443)
+....++.....+....+.+|...|.+++| ++++|++|+.||.|++||+.+++.+.. ...|...|.+++|++ .
T Consensus 152 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~l~~~~--~ 224 (435)
T 1p22_A 152 DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT---LIHHCEAVLHLRFNN--G 224 (435)
T ss_dssp SSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE---ECCCCSCEEEEECCT--T
T ss_pred CCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE---EcCCCCcEEEEEEcC--C
Confidence 344456666666667788999999999999 789999999999999999999876654 457888999999974 5
Q ss_pred eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeee
Q 013436 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 262 (443)
.|++++.||.|++||+.++......... .+|...|.+++| +++++++|+.||.|++||+++++.+
T Consensus 225 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~ 289 (435)
T 1p22_A 225 MMVTCSKDRSIAVWDMASPTDITLRRVL-------------VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFV 289 (435)
T ss_dssp EEEEEETTSCEEEEECSSSSCCEEEEEE-------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEeeCCCcEEEEeCCCCCCceeeeEe-------------cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEE
Confidence 8999999999999999887654222211 146668999999 6889999999999999999999999
Q ss_pred EEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEE
Q 013436 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342 (443)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 342 (443)
..+..|...|.++.+. ++++++|+.||.|++||++ +++++..+.+|...|.+++| ++.+|++++.||.|++
T Consensus 290 ~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~v 360 (435)
T 1p22_A 290 RTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKV 360 (435)
T ss_dssp EEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred EEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECC----CCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEE
Confidence 9999999999999995 5799999999999999998 88999999999999999999 7889999999999999
Q ss_pred EeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeE
Q 013436 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 422 (443)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v 422 (443)
||+++....... .....+..+.+|...+..+ .| ++.+|++|+.||.|
T Consensus 361 wd~~~~~~~~~~-------------------------~~~~~~~~~~~h~~~v~~l--~~------~~~~l~s~s~Dg~i 407 (435)
T 1p22_A 361 WDLVAALDPRAP-------------------------AGTLCLRTLVEHSGRVFRL--QF------DEFQIVSSSHDDTI 407 (435)
T ss_dssp EEHHHHTSTTSC-------------------------TTTTEEEEECCCSSCCCCE--EE------CSSCEEECCSSSEE
T ss_pred EECCCCCCcccc-------------------------ccchheeeccCCCCCeEEE--Ee------CCCEEEEEeCCCEE
Confidence 999763311100 0022577788887544433 23 67889999999999
Q ss_pred EEEEccChhhhh
Q 013436 423 YVYDLVSIQILF 434 (443)
Q Consensus 423 ~iwd~~~g~~~~ 434 (443)
++||+.++....
T Consensus 408 ~iwd~~~~~~~~ 419 (435)
T 1p22_A 408 LIWDFLNDPAAQ 419 (435)
T ss_dssp EEEC--------
T ss_pred EEEECCCCCCcc
Confidence 999998876543
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-32 Score=254.94 Aligned_cols=245 Identities=21% Similarity=0.251 Sum_probs=198.5
Q ss_pred cCCCCceE--EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEEC
Q 013436 121 DQTTSRAY--VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 121 ~~h~~~v~--~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 198 (443)
.+|...++ +++|++ ..+++++.|+.|++||+.++...... ...|...|.+++|+|++++|++++.||.|++||+
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 36666544 455554 56888889999999999998665542 2337778999999999999999999999999999
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC-CCeeeEEeeccCCCeEEEEE
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~ 277 (443)
.+++...... +|...|.+++|+ +..|++|+.||.|++||++ ....+..+..|...|.+++|
T Consensus 164 ~~~~~~~~~~----------------~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 225 (401)
T 4aez_A 164 ESQTKLRTMA----------------GHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 225 (401)
T ss_dssp TTCCEEEEEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred cCCeEEEEec----------------CCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEE
Confidence 9886544332 366689999994 6799999999999999998 46677888899999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCC-EEEEEe--CCCCEEEEeCCCCCCcccc
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNG--KDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~ 354 (443)
+ +++++|++|+.|+.|++||++ .+..+..+..|...|.+++|+|++. ++++++ .|+.|++||+++
T Consensus 226 ~-~~~~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~------- 293 (401)
T 4aez_A 226 R-SDGLQLASGGNDNVVQIWDAR----SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT------- 293 (401)
T ss_dssp C-TTSSEEEEEETTSCEEEEETT----CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-------
T ss_pred c-CCCCEEEEEeCCCeEEEccCC----CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-------
Confidence 8 689999999999999999998 7888888999999999999999764 555654 699999999988
Q ss_pred CCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEE--eeCCCeEEEEEccChhh
Q 013436 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT--GSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~t--g~~dg~v~iwd~~~g~~ 432 (443)
++.+..+..+. .+..+ .|+|++++|++ |+.||.|++||+.+++.
T Consensus 294 ---------------------------~~~~~~~~~~~---~v~~~----~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~ 339 (401)
T 4aez_A 294 ---------------------------GARVNTVDAGS---QVTSL----IWSPHSKEIMSTHGFPDNNLSIWSYSSSGL 339 (401)
T ss_dssp ---------------------------CCEEEEEECSS---CEEEE----EECSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred ---------------------------CCEEEEEeCCC---cEEEE----EECCCCCeEEEEeecCCCcEEEEecCCccc
Confidence 34455554332 22233 46668999999 55899999999988654
Q ss_pred h
Q 013436 433 L 433 (443)
Q Consensus 433 ~ 433 (443)
.
T Consensus 340 ~ 340 (401)
T 4aez_A 340 T 340 (401)
T ss_dssp E
T ss_pred e
Confidence 4
No 76
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=250.57 Aligned_cols=213 Identities=16% Similarity=0.169 Sum_probs=176.3
Q ss_pred ecCCccc-eEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEE
Q 013436 164 LAKSLRW-TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (443)
Q Consensus 164 ~~~~~~~-~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 242 (443)
...+|.. .|.+++|+|++++||+++.|+.|+|||+.++........ ..+|...|.+++|+|++++|
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~-------------~~~h~~~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL-------------SEGHQRTVRKVAWSPCGNYL 76 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE-------------CSSCSSCEEEEEECTTSSEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee-------------ccccCCcEEEEEECCCCCEE
Confidence 4556766 899999999999999999999999999987754322111 12577799999999999999
Q ss_pred EEEecCCeEEEEECCCC--eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeE
Q 013436 243 VAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (443)
Q Consensus 243 ~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 320 (443)
++|+.|+.|++||+..+ +++..+.+|...|.+++|+ +++++|++|+.|+.|++||++... ...++..+.+|...|.
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVK 154 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTS-CEEEEEEECCCCSCEE
T ss_pred EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCC-CeEEEEEecCcCCCeE
Confidence 99999999999998876 4567888999999999998 789999999999999999997321 2245677889999999
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEE
Q 013436 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (443)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (443)
+++|+|++++|++++.|+.|++||++... ......+.+|...+.
T Consensus 155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~--------------------------------~~~~~~~~~h~~~v~---- 198 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDDTVKLYREEEDD--------------------------------WVCCATLEGHESTVW---- 198 (345)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEEEETTE--------------------------------EEEEEEECCCSSCEE----
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEecCCC--------------------------------EEEEEEecCCCCceE----
Confidence 99999999999999999999999987621 123567788874333
Q ss_pred EecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 401 ~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
+.+|+|+|++|++|+.||+|+|||...
T Consensus 199 --~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 199 --SLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp --EEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred --EEEECCCCCEEEEEeCCCeEEEecccc
Confidence 334667999999999999999999743
No 77
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.6e-32 Score=291.99 Aligned_cols=300 Identities=16% Similarity=0.202 Sum_probs=233.9
Q ss_pred ccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC--CC
Q 013436 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQ 181 (443)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~ 181 (443)
....++..........+.+|...|.+++|+|++++|++|+.|+.|+|||+.+++.+.. ...|...|.+++|+| ++
T Consensus 637 ~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ 713 (1249)
T 3sfz_A 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT---YDEHSEQVNCCHFTNKSNH 713 (1249)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---EECCSSCEEEEEECSSSSC
T ss_pred CeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE---EcCCCCcEEEEEEecCCCc
Confidence 4455666666677778899999999999999999999999999999999999976654 456888999999999 55
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 013436 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (443)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 261 (443)
.++++++.|+.|++||+.+++...... +|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 714 ~~l~sg~~d~~v~vwd~~~~~~~~~~~----------------~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 714 LLLATGSNDFFLKLWDLNQKECRNTMF----------------GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp CEEEEEETTSCEEEEETTSSSEEEEEC----------------CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred eEEEEEeCCCeEEEEECCCcchhheec----------------CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 689999999999999999887544322 4666999999999999999999999999999877654
Q ss_pred eEEee-------------------------------------------------------ccCCCeEEEEEeCCCCCEEE
Q 013436 262 SLRIL-------------------------------------------------------AHTSDVNTVCFGDESGHLIY 286 (443)
Q Consensus 262 ~~~~~-------------------------------------------------------~~~~~v~~i~~~~~~~~~l~ 286 (443)
...+. +|...|.+++|+ +++.+++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~ 856 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS-PYDHLAV 856 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC-SSTTEEE
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc-CCCCEEE
Confidence 33321 567889999997 8899999
Q ss_pred EeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCc---------
Q 013436 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG--------- 357 (443)
Q Consensus 287 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------- 357 (443)
+++.|+.|++||+. .+..+..+.+|...|++++|+|++++|++++.|+.|++||+.+..........
T Consensus 857 ~~~~dg~v~vwd~~----~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 932 (1249)
T 3sfz_A 857 IALSQYCVELWNID----SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE 932 (1249)
T ss_dssp EECSSSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEET
T ss_pred EEeCCCeEEEEEcC----CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcC
Confidence 99999999999998 88889999999999999999999999999999999999997653221111000
Q ss_pred ------------------------ccccCcccccccCCCCCCcccC------------CCCeeEEEEeccceeeeeeEEE
Q 013436 358 ------------------------FRSYEWDYRWMDYPPQARDLKH------------PCDQSVATYKGHSVLRTLIRCH 401 (443)
Q Consensus 358 ------------------------~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 401 (443)
.......+..+.+++++..+.. ..+..+..+.+|...+.
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~----- 1007 (1249)
T 3sfz_A 933 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVR----- 1007 (1249)
T ss_dssp TEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCC-----
T ss_pred CCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceE-----
Confidence 0001112233445555443322 22344455556654332
Q ss_pred ecCCccCCccEEEEeeCCCeEEEEEccChhhh
Q 013436 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 402 ~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
+..|+|+|++|++++.||.|++||+.+++.+
T Consensus 1008 -~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 1008 -HIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp -CEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred -EEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 2346779999999999999999999988755
No 78
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-32 Score=259.57 Aligned_cols=271 Identities=15% Similarity=0.118 Sum_probs=196.2
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCe---EEEEeeec-----------------------------------
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW---KIQKDILA----------------------------------- 165 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~---~~~~~~~~----------------------------------- 165 (443)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+......
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999976666 57899999999887 33322110
Q ss_pred ----------------CCccceEEEEEECCCCCeE-EEEECCCeEEEEECC--CCceeccccceecccCceeeccCCCCc
Q 013436 166 ----------------KSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGY 226 (443)
Q Consensus 166 ----------------~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (443)
..|...|.+++|+|++++| ++++.||.|++||+. +++........ .|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~ 148 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------------CF 148 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------------EC
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--------------cC
Confidence 1234469999999999996 888899999999998 66554433211 13
Q ss_pred eecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE----EeeccCCCeEEEEEeCCC---CCEEEEeeCCCeEEEEec
Q 013436 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDR 299 (443)
Q Consensus 227 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~~---~~~l~~~~~d~~i~iwd~ 299 (443)
...|.+++|+|++++|++|+.+|.|++|++.+++... .+.+|...|++++|+ ++ +++|++|+.|+.|++||+
T Consensus 149 ~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 149 SKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI-KDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE-ECTTSCEEEEEEETTSCEEEEEE
T ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc-CCCCCCcEEEEEcCCCcEEEEEC
Confidence 3479999999999999999999999999998876544 677899999999998 66 889999999999999999
Q ss_pred ccCCCCCceeee-ecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCccc
Q 013436 300 RCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (443)
Q Consensus 300 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (443)
+ .+..+.. +.+|...|++++|+ ++++|++++.|+.|++||+++.+.+........... +.+....
T Consensus 228 ~----~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~---- 293 (450)
T 2vdu_B 228 P----QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKP-----YLNDQHL---- 293 (450)
T ss_dssp S----CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGG-----GCCTTSB----
T ss_pred C----CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhh-----hhhhccc----
Confidence 8 6777766 56899999999999 999999999999999999998654333211100000 0000000
Q ss_pred CCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee-CCCeEEEEEc--cCh
Q 013436 379 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDL--VSI 430 (443)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~-~dg~v~iwd~--~~g 430 (443)
+... ...-........+..+ .|+|++++|++++ .|+.|++|++ .++
T Consensus 294 -~~~~-~~~~~~~~~~~~v~~i----~~~~~~~~l~~~~~~d~~i~iw~~~~~~~ 342 (450)
T 2vdu_B 294 -APPR-FQNENNDIIEFAVSKI----IKSKNLPFVAFFVEATKCIIILEMSEKQK 342 (450)
T ss_dssp -C-----------CBCCCEEEE----EECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred -cccc-ccccccccceEEEEEE----EEeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence 0000 0000000011122233 3556899999999 8999999999 555
No 79
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.5e-32 Score=270.82 Aligned_cols=251 Identities=12% Similarity=0.080 Sum_probs=209.4
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCC----eEEEEeeecCCccce-EEEEEECC--CCCeEEEEECCCeEE
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWT-VTDTSLSP--DQRHLVYASMSPIVH 194 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~-v~~i~~s~--~~~~l~~~~~dg~i~ 194 (443)
.|.+.|.+++|+|+|++|++++ ++.|+|||+.++ .... ...+|... |++++|+| ++++|++++.||.|+
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 6789999999999999999998 789999999987 4444 35678889 99999999 999999999999999
Q ss_pred EEECCCC------ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC----CeEEEEECCCCeeeEE
Q 013436 195 IVDVGSG------TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLR 264 (443)
Q Consensus 195 iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~ 264 (443)
+||+.++ ......... +|..+|.+++|+|++++|++++.+ +.|++|| .++.+..
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~ 155 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQ--------------VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGE 155 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEE--------------CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEE
T ss_pred EEeCCCCcccccccccccchhh--------------cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCccee
Confidence 9999755 221111111 355589999999999999999987 6888998 5667888
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCC---CeEEEEECCC-CCEEEEEeCCCCE
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE---GITFIDSRGD-GRYLISNGKDQAI 340 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~s~~~dg~i 340 (443)
+..|...|.+++|+|....++++++.|+.|++||+. ..+.+..+.+|.. .|++++|+|+ +++|++++.|+.|
T Consensus 156 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 231 (615)
T 1pgu_A 156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP----PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 231 (615)
T ss_dssp CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT----TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC----CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeE
Confidence 899999999999984433489999999999999998 8888999999999 9999999999 9999999999999
Q ss_pred EEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEE-e---ccceeeeeeEEEecCCccCCccEEEEe
Q 013436 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-K---GHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (443)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~s~d~~~l~tg 416 (443)
++||+++ ++.+..+ . +|..... . ..|+ ++++|+++
T Consensus 232 ~vwd~~~----------------------------------~~~~~~~~~~~~~~~~~v~--~----~~~~-~~~~l~~~ 270 (615)
T 1pgu_A 232 SCFDGKS----------------------------------GEFLKYIEDDQEPVQGGIF--A----LSWL-DSQKFATV 270 (615)
T ss_dssp EEEETTT----------------------------------CCEEEECCBTTBCCCSCEE--E----EEES-SSSEEEEE
T ss_pred EEEECCC----------------------------------CCEeEEecccccccCCceE--E----EEEc-CCCEEEEE
Confidence 9999988 3445555 4 5553322 2 2355 79999999
Q ss_pred eCCCeEEEEEccChhhhhHhH
Q 013436 417 SHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 417 ~~dg~v~iwd~~~g~~~~~~~ 437 (443)
+.||.|++||+.+++.+..++
T Consensus 271 ~~d~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 271 GADATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp ETTSEEEEEETTTTEEEEEEE
T ss_pred cCCCcEEEEECCCCcEEEEEc
Confidence 999999999999988765543
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.3e-32 Score=243.47 Aligned_cols=228 Identities=15% Similarity=0.181 Sum_probs=179.6
Q ss_pred ccceeecccc--cCCCccccCCCCceEEEEECCC--CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC
Q 013436 104 CCHMLSRYLP--VNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (443)
Q Consensus 104 ~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~~--~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~ 179 (443)
....++.... .+....+.+|.++|++++|+|+ +++|++|+.|++|+|||+.++... .......|...|.+++|+|
T Consensus 31 ~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p 109 (297)
T 2pm7_B 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAP 109 (297)
T ss_dssp SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECC
T ss_pred CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCc
Confidence 3344554432 2445678999999999999874 899999999999999999876311 1223456888999999999
Q ss_pred C--CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC-------------CCEEEE
Q 013436 180 D--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-------------GRELVA 244 (443)
Q Consensus 180 ~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-------------~~~l~~ 244 (443)
+ +.+|++++.|+.|++||+.++....... . .+|...|.+++|+|+ +++|++
T Consensus 110 ~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~-~-------------~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~s 175 (297)
T 2pm7_B 110 HEYGPMLLVASSDGKVSVVEFKENGTTSPII-I-------------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175 (297)
T ss_dssp GGGCSEEEEEETTSEEEEEEBCSSSCBCCEE-E-------------ECCSSCEEEEEECCCC------------CCEEEE
T ss_pred CCCCcEEEEEECCCcEEEEEecCCCceeeee-e-------------ecccCccceEeecCCcccccccCCCCCCcceEEE
Confidence 8 8899999999999999998763221111 1 146668999999997 579999
Q ss_pred EecCCeEEEEECCCCe----eeEEeeccCCCeEEEEEeCCC--CCEEEEeeCCCeEEEEecccCCCCCceeeee--cCCC
Q 013436 245 GSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL--MGHL 316 (443)
Q Consensus 245 ~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~ 316 (443)
|+.|+.|++||+++++ ....+.+|...|.+++|+|.. +.+|++++.|++|++||++..... .....+ ..|.
T Consensus 176 gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~-~~~~~~~~~~~~ 254 (297)
T 2pm7_B 176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP-WKKTLLKEEKFP 254 (297)
T ss_dssp EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC-CEEEESSSSCCS
T ss_pred EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc-cceeeeecccCC
Confidence 9999999999998765 556788999999999998432 589999999999999999732100 111223 4678
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
..|.+++|+|++++|++++.|+.|+||+...
T Consensus 255 ~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 255 DVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 8999999999999999999999999999864
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-32 Score=277.61 Aligned_cols=203 Identities=12% Similarity=0.114 Sum_probs=174.7
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
.+|.+.|++++|+|++++||+|+.||.|+||+..+.+.... ..|..+|.+++|+| +++|++++.|+.|++||+.+
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~----~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK----LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE----CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE----cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence 57899999999999999999999999999999988754332 24677899999999 88999999999999999998
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeee-----------EEeeccC
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-----------LRILAHT 269 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~ 269 (443)
++...... |...|.+++|+|++++|++|+.||.|++||+++++.. ..+.+|.
T Consensus 89 ~~~~~~~~-----------------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 89 QKVLTTVF-----------------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp CSEEEEEE-----------------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred CcEEEEEc-----------------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence 87654332 2237999999999999999999999999999988753 2235688
Q ss_pred CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC------------------CCCeEEEEECCCCCEE
Q 013436 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------------------LEGITFIDSRGDGRYL 331 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l 331 (443)
+.|++++|+|.++..+++|+.|+.| +||++ .++++..+..| ...|++++|+|+|++|
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLV----ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETT----TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECC----CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 9999999996567899999999999 99998 77777777655 5779999999999999
Q ss_pred EEEeCCCCEEEEeCCCCCC
Q 013436 332 ISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~ 350 (443)
++++.||.|++||+++.+.
T Consensus 227 asgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 227 ITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EEEETTCCEEEEETTTCCE
T ss_pred EEEECCCeEEEEECCCCcE
Confidence 9999999999999988543
No 82
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.8e-32 Score=266.56 Aligned_cols=268 Identities=16% Similarity=0.152 Sum_probs=219.3
Q ss_pred cceeeccccc----CCCccccCCCCc-eEEEEECC--CCCEEEEEECCCeEEEEECCCC------eEEEEeeecCCccce
Q 013436 105 CHMLSRYLPV----NGPWPVDQTTSR-AYVSQFSA--DGSLFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWT 171 (443)
Q Consensus 105 ~~~~~~~~~~----~~~~~~~~h~~~-v~~~~~s~--~~~~l~~g~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~ 171 (443)
...++..... +....+.+|... |++++|+| ++++|++|+.||.|+|||+.++ .. ........|...
T Consensus 40 ~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~~~~~~~~~ 118 (615)
T 1pgu_A 40 SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV-NVKSEFQVLAGP 118 (615)
T ss_dssp EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE-EEEEEEECCSSC
T ss_pred eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccc-cccchhhccccc
Confidence 3445555545 567788999999 99999999 9999999999999999999754 11 122234567788
Q ss_pred EEEEEECCCCCeEEEEECC----CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEe
Q 013436 172 VTDTSLSPDQRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGS 246 (443)
Q Consensus 172 v~~i~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~ 246 (443)
|.+++|+|++++|++++.+ +.|++|| .++..... .+|...|.+++|+|+++ .+++++
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~ 180 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEV----------------SGHSQRINACHLKQSRPMRSMTVG 180 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEEC----------------CSCSSCEEEEEECSSSSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceee----------------ecCCccEEEEEECCCCCcEEEEEe
Confidence 9999999999999999988 6888888 33322211 14666899999999998 899999
Q ss_pred cCCeEEEEECCCCeeeEEeeccCC---CeEEEEEeCCC-CCEEEEeeCCCeEEEEecccCCCCCceeeee-c---CCCCC
Q 013436 247 SDDCIYVYDLEANKLSLRILAHTS---DVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-M---GHLEG 318 (443)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~---~v~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~---~~~~~ 318 (443)
.|+.|++||+.+++.+..+..|.. .|.+++|+ ++ +++|++++.|+.|++||++ .++.+..+ . .|...
T Consensus 181 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~ 255 (615)
T 1pgu_A 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGK----SGEFLKYIEDDQEPVQGG 255 (615)
T ss_dssp TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETT----TCCEEEECCBTTBCCCSC
T ss_pred CCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECC----CCCEeEEecccccccCCc
Confidence 999999999999999999999999 99999998 66 9999999999999999998 78888888 6 89999
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccce--eee
Q 013436 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV--LRT 396 (443)
Q Consensus 319 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 396 (443)
|.+++|+ ++++|++++.|+.|++||+++ .+.+..+..+.. ...
T Consensus 256 v~~~~~~-~~~~l~~~~~d~~i~~wd~~~----------------------------------~~~~~~~~~~~~~~~~~ 300 (615)
T 1pgu_A 256 IFALSWL-DSQKFATVGADATIRVWDVTT----------------------------------SKCVQKWTLDKQQLGNQ 300 (615)
T ss_dssp EEEEEES-SSSEEEEEETTSEEEEEETTT----------------------------------TEEEEEEECCTTCGGGC
T ss_pred eEEEEEc-CCCEEEEEcCCCcEEEEECCC----------------------------------CcEEEEEcCCCCcccCc
Confidence 9999999 999999999999999999998 455666666521 122
Q ss_pred eeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 397 ~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
...+.+ + +++++++++.||.|++||+.+++.+..+
T Consensus 301 ~~~~~~----~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~ 335 (615)
T 1pgu_A 301 QVGVVA----T-GNGRIISLSLDGTLNFYELGHDEVLKTI 335 (615)
T ss_dssp EEEEEE----E-ETTEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred eeEEEe----C-CCCeEEEEECCCCEEEEECCCCcEEEEE
Confidence 223333 2 6889999999999999999987766544
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.2e-32 Score=255.89 Aligned_cols=254 Identities=14% Similarity=0.214 Sum_probs=199.5
Q ss_pred ceEEEEECCCCCEEE-EEECCCeEEEEECCCCeEE-EEeeecCCccceEEEEEECC-CCCeEEEEECCCeEEEEECCCCc
Q 013436 126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~-~g~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
....++++|+...++ +++.||.|+||++...... .......+|...|++++|+| ++++|++++.||.|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 445688999875544 5788999999999765333 22334568999999999999 89999999999999999999875
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEe--eccCCCeEEEEEeC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI--LAHTSDVNTVCFGD 279 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~ 279 (443)
........ .....+|...|.+++|+|++ .+|++++.||.|++||+++++.+..+ ..|...|.+++|+
T Consensus 116 ~~~~~~~~---------~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~- 185 (402)
T 2aq5_A 116 LVLPLREP---------VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS- 185 (402)
T ss_dssp CSSCBCSC---------SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC-
T ss_pred CccccCCc---------eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC-
Confidence 32111000 00011466799999999998 69999999999999999999999998 7899999999998
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCCCCceeeee-cCCCCC-eEEEEECCCCCEEEEE---eCCCCEEEEeCCCCCCcccc
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEG-ITFIDSRGDGRYLISN---GKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~ 354 (443)
+++++|++++.|+.|++||++ .++.+..+ .+|... +.++.|+|++++|+++ +.|+.|++||+++....
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~--- 258 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPR----KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP--- 258 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETT----TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC---
T ss_pred CCCCEEEEEecCCcEEEEeCC----CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC---
Confidence 789999999999999999998 78888888 688776 8999999999999999 78999999999874321
Q ss_pred CCcccccCcccccccCCCCCCcccCCCCeeEEEEe-ccceeeeeeEEEecCCccCCccEEE-EeeCCCeEEEEEccChhh
Q 013436 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIY-TGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~d~~~l~-tg~~dg~v~iwd~~~g~~ 432 (443)
+.... .|.. .+..+ .|+|++++|+ +|+.||.|++||+.+++.
T Consensus 259 ------------------------------~~~~~~~~~~--~v~~~----~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 259 ------------------------------LSLQELDTSS--GVLLP----FFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp ------------------------------SEEEECCCCS--SCEEE----EEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred ------------------------------ceEEeccCCC--ceeEE----EEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 11111 1221 22233 4566899886 455799999999998874
No 84
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.2e-31 Score=253.69 Aligned_cols=247 Identities=20% Similarity=0.339 Sum_probs=210.0
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 195 (443)
....+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+.. ..+|...|.+++|+ +++|++++.||.|++
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE---CCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEE---EcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 45678899987643 3555789999999999999999999876653 56788899999997 569999999999999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 275 (443)
||+.+++...... +|...|.++.|+ ++.+++|+.||.|++||+.+++.+..+..|...|.++
T Consensus 184 wd~~~~~~~~~~~----------------~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 184 WNAETGECIHTLY----------------GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EETTTTEEEEEEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred EECCcCcEEEEEC----------------CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence 9999886643322 466689999996 5679999999999999999999999999999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccC
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (443)
++ +++++++|+.|+.|++||++ .++.+..+.+|...|.+++| ++.++++++.|+.|++||+++
T Consensus 246 ~~---~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~-------- 308 (445)
T 2ovr_B 246 QY---DGRRVVSGAYDFMVKVWDPE----TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-------- 308 (445)
T ss_dssp EE---CSSCEEEEETTSCEEEEEGG----GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT--------
T ss_pred EE---CCCEEEEEcCCCEEEEEECC----CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC--------
Confidence 98 46789999999999999998 78899999999999999999 788999999999999999998
Q ss_pred CcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhH
Q 013436 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFC 435 (443)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~ 435 (443)
.+.+..+.+|......+. +++++|++|+.||.|++||+.+++.+..
T Consensus 309 --------------------------~~~~~~~~~~~~~v~~~~--------~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 354 (445)
T 2ovr_B 309 --------------------------GNCIHTLTGHQSLTSGME--------LKDNILVSGNADSTVKIWDIKTGQCLQT 354 (445)
T ss_dssp --------------------------CCEEEEECCCCSCEEEEE--------EETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred --------------------------CCEEEEEcCCcccEEEEE--------EeCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 456777877775433322 2578999999999999999999887765
Q ss_pred hH
Q 013436 436 RQ 437 (443)
Q Consensus 436 ~~ 437 (443)
++
T Consensus 355 ~~ 356 (445)
T 2ovr_B 355 LQ 356 (445)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 85
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.6e-31 Score=251.46 Aligned_cols=258 Identities=23% Similarity=0.362 Sum_probs=217.6
Q ss_pred cccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC
Q 013436 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (443)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 182 (443)
+....++.....+....+.+|...|.+++|+ +++|++|+.||.|++||+.+++.+.. ...|...|.+++|+ ++
T Consensus 138 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~ 210 (445)
T 2ovr_B 138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT---LYGHTSTVRCMHLH--EK 210 (445)
T ss_dssp TSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEE--TT
T ss_pred CCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE---ECCCCCcEEEEEec--CC
Confidence 3445566666667777889999999999998 66999999999999999999866553 45788899999995 57
Q ss_pred eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeee
Q 013436 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 262 (443)
.+++++.||.|++||+.+++...... +|...|.+++| ++.++++|+.||.|++||+++++++
T Consensus 211 ~l~s~s~dg~i~~wd~~~~~~~~~~~----------------~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~ 272 (445)
T 2ovr_B 211 RVVSGSRDATLRVWDIETGQCLHVLM----------------GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL 272 (445)
T ss_dssp EEEEEETTSEEEEEESSSCCEEEEEE----------------CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEc----------------CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe
Confidence 89999999999999999887644322 35568999999 6889999999999999999999999
Q ss_pred EEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEE
Q 013436 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342 (443)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 342 (443)
..+..|...|.+++| ++.++++++.|+.|++||++ +++.+..+.+|...+.++.++ +++|++++.||.|++
T Consensus 273 ~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~v 343 (445)
T 2ovr_B 273 HTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKI 343 (445)
T ss_dssp EEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETT----TCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred EEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECC----CCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEE
Confidence 999999999999999 57899999999999999998 888999999999999998884 669999999999999
Q ss_pred EeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEec---cceeeeeeEEEecCCccCCccEEEEeeCC
Q 013436 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG---HSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (443)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~s~d~~~l~tg~~d 419 (443)
||+++ ++.+..+.+ |.. .+..+.| ++++|++|+.|
T Consensus 344 wd~~~----------------------------------~~~~~~~~~~~~~~~--~v~~~~~------~~~~l~s~~~d 381 (445)
T 2ovr_B 344 WDIKT----------------------------------GQCLQTLQGPNKHQS--AVTCLQF------NKNFVITSSDD 381 (445)
T ss_dssp EETTT----------------------------------CCEEEEECSTTSCSS--CEEEEEE------CSSEEEEEETT
T ss_pred EECCC----------------------------------CcEEEEEccCCCCCC--CEEEEEE------CCCEEEEEeCC
Confidence 99988 455667766 432 2223333 46899999999
Q ss_pred CeEEEEEccChhhhhHh
Q 013436 420 SCVYVYDLVSIQILFCR 436 (443)
Q Consensus 420 g~v~iwd~~~g~~~~~~ 436 (443)
|.|++||+.+++.+..+
T Consensus 382 g~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 382 GTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp SEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCceeeee
Confidence 99999999999887655
No 86
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-31 Score=248.27 Aligned_cols=203 Identities=16% Similarity=0.182 Sum_probs=169.5
Q ss_pred cCCCCceEEEEECCCCCEEEEEE--CCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEEC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 198 (443)
..+...+.+++|||||+++++++ .|++|+|||+.++..+... .|...|.+++|+||+++|++++.+ .+.+|+.
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~----~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~ 204 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI----ETRGEVKDLHFSTDGKVVAYITGS-SLEVIST 204 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE----ECSSCCCEEEECTTSSEEEEECSS-CEEEEET
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe----CCCCceEEEEEccCCceEEeccce-eEEEEEe
Confidence 44566799999999999987655 6899999999998766543 355679999999999999998855 5677777
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC----eEEEEECCCCee----eEEeeccCC
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANKL----SLRILAHTS 270 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg----~i~iwd~~~~~~----~~~~~~~~~ 270 (443)
.++....... ..+|...|.+++|+|+++.+++++.++ .+++||+..... ...+..|..
T Consensus 205 ~~~~~~~~~~--------------~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 270 (365)
T 4h5i_A 205 VTGSCIARKT--------------DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK 270 (365)
T ss_dssp TTCCEEEEEC--------------CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS
T ss_pred ccCcceeeee--------------cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCC
Confidence 7665432211 124666899999999999999999887 688999877643 345668999
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee-cCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.|++++|+ |++++||+|+.|+.|+|||++ +++++..+ .+|...|++++|+|||++||+++.|++|+|||+..
T Consensus 271 ~V~~~~~S-pdg~~lasgs~D~~V~iwd~~----~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 271 GITSMDVD-MKGELAVLASNDNSIALVKLK----DLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp CEEEEEEC-TTSCEEEEEETTSCEEEEETT----TTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CeEeEEEC-CCCCceEEEcCCCEEEEEECC----CCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999998 899999999999999999998 88888874 78999999999999999999999999999999965
No 87
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-32 Score=257.52 Aligned_cols=281 Identities=13% Similarity=0.153 Sum_probs=197.4
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECC---CCeEEEEe-------eecCC--ccceEEEEE--ECCCCCeEEEE
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE---RGWKIQKD-------ILAKS--LRWTVTDTS--LSPDQRHLVYA 187 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~---~~~~~~~~-------~~~~~--~~~~v~~i~--~s~~~~~l~~~ 187 (443)
+|...|.+++|+|++++|++|+.||.|++||+. ++..+... ..... +...+.++. +++++.+|+++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 699999999999999999999999999999995 44222211 11111 445677777 66889999999
Q ss_pred ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee-
Q 013436 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL- 266 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~- 266 (443)
+.|+.|++||+.+++........ .|...|.+++|+|++.+|++|+.||.|++||+++++++..+.
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~--------------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 254 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENS--------------PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF 254 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECC--------------GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC
T ss_pred eCCCeEEEEeCCCCeeeEEEccC--------------CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec
Confidence 99999999999988765443311 145589999999999999999999999999999999988886
Q ss_pred ccCCCeEEEEEeC---CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC--------------------------CCC
Q 013436 267 AHTSDVNTVCFGD---ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--------------------------HLE 317 (443)
Q Consensus 267 ~~~~~v~~i~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------------------------~~~ 317 (443)
.|...|.+++|+| +++.+|++|+.|+.|++||++ .++.+..+.+ |..
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 330 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV----KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLN 330 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT----TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGG
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC----CCcEEEEEEcCCCCCccceecccccccccceecccccCC
Confidence 7888999997774 467799999999999999998 6666655553 555
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCc----ccCCCCeeEEEEeccce
Q 013436 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD----LKHPCDQSVATYKGHSV 393 (443)
Q Consensus 318 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 393 (443)
.|++++|+ ++++|++++.|+.|++||+++.+........ ......+....+.+.... +.............|..
T Consensus 331 ~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (437)
T 3gre_A 331 ALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP-SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHD 408 (437)
T ss_dssp GGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC---CCCEEEEEEEETTEEEEEEECC-------------CC
T ss_pred ceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc-cccCceEEEEEeecceEEEEEecccccccccCccccccc
Confidence 68888998 7789999999999999999987655433211 000111111111111000 00111122233344665
Q ss_pred eeeeeEEEecCCccCCccEEEEeeCCCeEEEEE
Q 013436 394 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (443)
Q Consensus 394 ~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd 426 (443)
.+..+. +.+. +++.+|++|+.||.|+||+
T Consensus 409 ~I~~i~--~~~~--~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 409 IINSIS--TCEV--DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEEE--EEES--SSSEEEEEEETTSCEEEEC
T ss_pred ceeeEe--eecc--CCceEEEEEcCCceEEEeC
Confidence 444433 3331 2378999999999999995
No 88
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-31 Score=242.73 Aligned_cols=213 Identities=17% Similarity=0.147 Sum_probs=166.7
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeE----EEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
+|...|.+++|+|++++|++|+.|++|+|||+..... ........+|...|.+++|+|++++|++++.|+.|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3999999999999999999999999999999864211 112234568899999999999999999999999999999
Q ss_pred CCCC-ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC--eeeEEeeccCCCeEE
Q 013436 198 VGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNT 274 (443)
Q Consensus 198 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~ 274 (443)
+... ........ ..+|...|.+++|+|++.+|++|+.|+.|++||+.++ +++..+.+|...|.+
T Consensus 136 ~~~~~~~~~~~~~-------------~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~ 202 (330)
T 2hes_X 136 TDESGEEYECISV-------------LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS 202 (330)
T ss_dssp CCTTCCCCEEEEE-------------ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred ccCCCCCeEEEEE-------------eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence 9533 21111111 1246678999999999999999999999999998776 677888899999999
Q ss_pred EEEeCCC-CCEEEEeeCCCeEEEEecccCCCCC----ceeeeecC-CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 275 VCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKG----KPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 275 i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
++|+|.. +.+|++|+.|++|++||++...... .+...+.+ |...|.+++|++++ +|++++.||.|+|||..+.
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 9998432 6789999999999999997321111 33444554 89999999999765 7999999999999998754
No 89
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.2e-31 Score=241.19 Aligned_cols=211 Identities=16% Similarity=0.200 Sum_probs=174.7
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
...+.+|...|.+++|+|++.+|++|+.|++|++||+.++..+.. ..+|...|.+++|+|++++|++++.|+.|++|
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~---~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~w 145 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR---FVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEE---EECCCSCEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEE---EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEE
Confidence 346789999999999999999999999999999999999866553 45788899999999999999999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC----------CEEEEEecCCeEEEEECCCCeeeEEee
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG----------RELVAGSSDDCIYVYDLEANKLSLRIL 266 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~ 266 (443)
|+......... ...+|...|.+++|+|++ .+|++++.||.|++||. ..+....+.
T Consensus 146 d~~~~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~ 210 (343)
T 2xzm_R 146 NILGECKFSSA--------------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK 210 (343)
T ss_dssp ESSSCEEEECC--------------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE
T ss_pred eccCCceeeee--------------cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc
Confidence 99743221111 112466689999999987 78999999999999994 566677888
Q ss_pred ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
.|...|.+++|+ +++++|++|+.|+.|++||++. .......+ .+...|.+++|+|++++++++ .|+.|++||+.
T Consensus 211 ~h~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~~---~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~ 284 (343)
T 2xzm_R 211 AHESNVNHLSIS-PNGKYIATGGKDKKLLIWDILN---LTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLM 284 (343)
T ss_dssp CCSSCEEEEEEC-TTSSEEEEEETTCEEEEEESSC---CSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESS
T ss_pred CccccceEEEEC-CCCCEEEEEcCCCeEEEEECCC---Ccccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeC
Confidence 999999999998 8899999999999999999952 22333333 345679999999999887655 57889999998
Q ss_pred CCCCc
Q 013436 347 KMSSN 351 (443)
Q Consensus 347 ~~~~~ 351 (443)
+.+..
T Consensus 285 ~~~~~ 289 (343)
T 2xzm_R 285 TQSKA 289 (343)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 76543
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.1e-31 Score=250.30 Aligned_cols=235 Identities=27% Similarity=0.402 Sum_probs=201.7
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
.+|...|+|++| ++++|++|+.||.|++||+.+++.+.. ..+|...|.+++| ++++|++|+.||.|++||+.+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI---LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE---ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEE---EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 457778998887 799999999999999999999866553 5578889999999 788999999999999999998
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeee---EEeeccCCCeEEEEE
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCF 277 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~ 277 (443)
++...... +|...|.+++|+ +..+++|+.||.|++||+.+++.. ..+.+|...|.+++|
T Consensus 203 ~~~~~~~~----------------~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 203 GEMLNTLI----------------HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp CCEEEEEC----------------CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred CcEEEEEc----------------CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence 87644332 366689999997 458999999999999999987655 567789999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCc
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (443)
+++++++|+.||.|++||++ +++.+..+.+|...|.++++ ++.+|++++.||.|++||+++
T Consensus 265 ---~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~---------- 325 (435)
T 1p22_A 265 ---DDKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC---------- 325 (435)
T ss_dssp ---ETTEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT----------
T ss_pred ---CCCEEEEEeCCCeEEEEECC----cCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC----------
Confidence 46799999999999999998 88899999999999999999 467999999999999999998
Q ss_pred ccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChh
Q 013436 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQ 431 (443)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~ 431 (443)
+..+..+.+|......+ . | ++.+|++|+.||.|++||+.+++
T Consensus 326 ------------------------~~~~~~~~~h~~~v~~~--~----~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 326 ------------------------GACLRVLEGHEELVRCI--R----F--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp ------------------------CCEEEEECCCSSCEEEE--E----C--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred ------------------------CCEEEEEeCCcCcEEEE--E----e--cCCEEEEEeCCCcEEEEECCCCC
Confidence 56678888887554433 2 2 68899999999999999998766
No 91
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-32 Score=255.15 Aligned_cols=262 Identities=18% Similarity=0.230 Sum_probs=208.6
Q ss_pred ccccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeE----EEEeeecCCccceEEEEEE
Q 013436 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSL 177 (443)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~i~~ 177 (443)
.+....+|.....+....+..|...|.+++|+|+|++|++|+.|+.|++||+.+... ........+|...|.++.|
T Consensus 86 ~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~ 165 (380)
T 3iz6_a 86 QDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY 165 (380)
T ss_dssp TTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBC
T ss_pred CCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEE
Confidence 345566777777777788899999999999999999999999999999999875311 1112245688889999999
Q ss_pred CCC-CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEE
Q 013436 178 SPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYD 255 (443)
Q Consensus 178 s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd 255 (443)
+|+ +..|++++.|++|++||+.+++........ ...+|...|.+++|++ ++.+|++|+.|+.|++||
T Consensus 166 ~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-----------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd 234 (380)
T 3iz6_a 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE-----------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234 (380)
T ss_dssp CSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-----------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEE
T ss_pred ecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-----------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEE
Confidence 997 457999999999999999998765433211 1235777999999987 889999999999999999
Q ss_pred CC-CCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC-------CCeEEEEECCC
Q 013436 256 LE-ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-------EGITFIDSRGD 327 (443)
Q Consensus 256 ~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~ 327 (443)
++ .++.+..+.+|...|++++|+ +++++|++|+.|++|++||++ .+..+..+..+. ..|++++|+|+
T Consensus 235 ~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~i~lwd~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 309 (380)
T 3iz6_a 235 LRITSRAVRTYHGHEGDINSVKFF-PDGQRFGTGSDDGTCRLFDMR----TGHQLQVYNREPDRNDNELPIVTSVAFSIS 309 (380)
T ss_dssp TTTTCCCCEEECCCSSCCCEEEEC-TTSSEEEEECSSSCEEEEETT----TTEEEEEECCCCSSSCCSSCSCSEEEECSS
T ss_pred CCCCCcceEEECCcCCCeEEEEEe-cCCCeEEEEcCCCeEEEEECC----CCcEEEEecccccccccccCceEEEEECCC
Confidence 98 457788889999999999998 889999999999999999998 777777665442 34899999999
Q ss_pred CCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccC
Q 013436 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (443)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (443)
|++|++++.||.|++||+...+...........+...+..+.+++++..+..
T Consensus 310 g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 361 (380)
T 3iz6_a 310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361 (380)
T ss_dssp SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence 9999999999999999998766544332222334444566667776655543
No 92
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=252.22 Aligned_cols=246 Identities=10% Similarity=0.056 Sum_probs=184.4
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccce
Q 013436 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (443)
Q Consensus 131 ~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 210 (443)
.+.+++.+|++|+.||.|++||+.+++.+.... ...|.++.|+|+ +++++.|+.|++|+.............
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 455688999999999999999999987665543 345778889988 999999999999987643211100000
Q ss_pred ecccCceeeccCCCCceecEEEEEEeC--CCCEEEEEecCCeEEEEECCCCeeeEEee-ccCCCeEEEEEeCCCCCEEEE
Q 013436 211 EIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYS 287 (443)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~ 287 (443)
. .... ...+|..+|.+++|+| +++++++++.||.|++||+++++.+.... .+...+++++|+ +++.+|++
T Consensus 115 ~-----~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~-pdg~~las 187 (343)
T 3lrv_A 115 K-----VLRE-IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH-KDSLLLAL 187 (343)
T ss_dssp C-----EEEE-EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC-TTSCEEEE
T ss_pred c-----eeEE-eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC-CCCCEEEE
Confidence 0 0000 0013445899999999 99999999999999999999998866654 455689999998 88999999
Q ss_pred eeCCCeEEEEecccCCCCCcee-eeecC-CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCccc
Q 013436 288 GSDDNLCKVWDRRCLNVKGKPA-GVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (443)
Q Consensus 288 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (443)
|+.||.|++||++ .++.+ ..+.. |...|++++|+|++.+|++++ |+.|++||+++.+......
T Consensus 188 g~~dg~i~iwd~~----~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~---------- 252 (343)
T 3lrv_A 188 YSPDGILDVYNLS----SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP---------- 252 (343)
T ss_dssp ECTTSCEEEEESS----CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC----------
T ss_pred EcCCCEEEEEECC----CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec----------
Confidence 9999999999998 66666 67777 999999999999999999999 5599999999865432221
Q ss_pred ccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC-CCeEEEEEccChh
Q 013436 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSIQ 431 (443)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~-dg~v~iwd~~~g~ 431 (443)
.+..|...... .+.+|+|+|++|++++. |+.|++|++.++.
T Consensus 253 ---------------------~~~~~~~~~~~----~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 253 ---------------------TYTIPEFKTGT----VTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp ---------------------CCBC-----CC----EEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ---------------------ccccccccccc----eEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 11111111111 12346679999999998 9999999997654
No 93
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.5e-31 Score=271.36 Aligned_cols=264 Identities=16% Similarity=0.199 Sum_probs=215.4
Q ss_pred cceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE
Q 013436 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 184 (443)
...++..........+.+|..+|.+++|+|++++|++|+.||.|++||+.++..+.. ...|...|++++|+|++++|
T Consensus 36 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l 112 (814)
T 3mkq_A 36 RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD---FEAHPDYIRSIAVHPTKPYV 112 (814)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE---EECCSSCEEEEEECSSSSEE
T ss_pred EEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE---EecCCCCEEEEEEeCCCCEE
Confidence 344666556666778889999999999999999999999999999999999876654 45688889999999999999
Q ss_pred EEEECCCeEEEEECCCCc-eeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeee
Q 013436 185 VYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLS 262 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 262 (443)
++++.||.|++||+.++. ...... +|...|.+++|+| ++..|++++.||.|++||+.+++..
T Consensus 113 ~~~~~dg~i~vw~~~~~~~~~~~~~----------------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~ 176 (814)
T 3mkq_A 113 LSGSDDLTVKLWNWENNWALEQTFE----------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176 (814)
T ss_dssp EEEETTSEEEEEEGGGTSEEEEEEE----------------CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred EEEcCCCEEEEEECCCCceEEEEEc----------------CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence 999999999999998763 222111 3556899999999 8899999999999999999988877
Q ss_pred EEeeccC-CCeEEEEEeC-CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCE
Q 013436 263 LRILAHT-SDVNTVCFGD-ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340 (443)
Q Consensus 263 ~~~~~~~-~~v~~i~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 340 (443)
..+..+. ..+.+++|+| +++.++++++.||.|++||++ .+..+..+.+|...|.+++|+|++++|++++.||.|
T Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v 252 (814)
T 3mkq_A 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252 (814)
T ss_dssp EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----TTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeE
Confidence 7777555 8999999984 288899999999999999998 788899999999999999999999999999999999
Q ss_pred EEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccE-EEEeeCC
Q 013436 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY-IYTGSHD 419 (443)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~tg~~d 419 (443)
++||+.+ .+.+..+..|... +..+ .|+|++.. +++++.|
T Consensus 253 ~vwd~~~----------------------------------~~~~~~~~~~~~~--v~~~----~~~~~~~~~~~~~~~~ 292 (814)
T 3mkq_A 253 KIWNSST----------------------------------YKVEKTLNVGLER--SWCI----ATHPTGRKNYIASGFD 292 (814)
T ss_dssp EEEETTT----------------------------------CSEEEEECCSSSS--EEEE----EECTTCGGGEEEEEET
T ss_pred EEEECCC----------------------------------CcEEEEeecCCCc--EEEE----EEccCCCceEEEEEeC
Confidence 9999988 3445666666532 2222 34556652 2444456
Q ss_pred CeEEEEEccChh
Q 013436 420 SCVYVYDLVSIQ 431 (443)
Q Consensus 420 g~v~iwd~~~g~ 431 (443)
+.+.+|++..+.
T Consensus 293 ~~~~~~~~~~~~ 304 (814)
T 3mkq_A 293 NGFTVLSLGNDE 304 (814)
T ss_dssp TEEEEEECSCCS
T ss_pred CCEEEEEcCCCC
Confidence 667888876543
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=253.82 Aligned_cols=218 Identities=14% Similarity=0.185 Sum_probs=176.1
Q ss_pred CccccCCC------------CceEEEEECCCC--CEEEEEECCCeEEEEECCCCeEEE----------------------
Q 013436 117 PWPVDQTT------------SRAYVSQFSADG--SLFVAGFQASQIRIYDVERGWKIQ---------------------- 160 (443)
Q Consensus 117 ~~~~~~h~------------~~v~~~~~s~~~--~~l~~g~~d~~i~iwd~~~~~~~~---------------------- 160 (443)
...+.+|. ..|.+++|+|++ .+|++++.|+.|++||+.++....
T Consensus 74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 153 (447)
T 3dw8_B 74 YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR 153 (447)
T ss_dssp EEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred ecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence 45677898 889999999998 899999999999999997643311
Q ss_pred ---------------EeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCC-ceeccccceecccCceeeccCCC
Q 013436 161 ---------------KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDG 224 (443)
Q Consensus 161 ---------------~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 224 (443)
......+|...|.+++|+|++++|+++ .|+.|++||+.+. ......... .....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~ 223 (447)
T 3dw8_B 154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK---------PANME 223 (447)
T ss_dssp CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC---------CSSGG
T ss_pred eccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc---------ccccc
Confidence 112246788999999999999999998 8999999999843 222211110 00122
Q ss_pred CceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCee----eEEeeccCC------------CeEEEEEeCCCCCEEEE
Q 013436 225 GYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL----SLRILAHTS------------DVNTVCFGDESGHLIYS 287 (443)
Q Consensus 225 ~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~------------~v~~i~~~~~~~~~l~~ 287 (443)
+|...|.+++|+|++ .+|++|+.||.|++||+++++. +..+..|.. .|.+++|+ +++++|++
T Consensus 224 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~ 302 (447)
T 3dw8_B 224 ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFS-HSGRYMMT 302 (447)
T ss_dssp GCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEEC-TTSSEEEE
T ss_pred ccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEEC-CCCCEEEE
Confidence 467789999999998 9999999999999999999886 677877776 89999998 78999999
Q ss_pred eeCCCeEEEEecccCCCC-CceeeeecCCCCC---------------eEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 288 GSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEG---------------ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 288 ~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
++. +.|++||++ . ++++..+.+|... +..++|+|++++|++++.||.|++||+.+.+.
T Consensus 303 ~~~-~~v~iwd~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 303 RDY-LSVKVWDLN----MENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp EES-SEEEEEETT----CCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred eeC-CeEEEEeCC----CCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 999 999999998 4 6777788877532 33489999999999999999999999998654
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.3e-30 Score=244.60 Aligned_cols=248 Identities=15% Similarity=0.200 Sum_probs=200.3
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceecc
Q 013436 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 206 (443)
+..++||++ ++||+|. |++|+|||+.+++.... .....|...|++++|+|++++|++|+.||.|++||+.+++....
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 678999976 5788775 89999999999965543 44567888899999999999999999999999999998876543
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEeeccCCCeEEEEEeCCCCCEE
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLI 285 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l 285 (443)
.. +|...+.++.++ +..|++|+.|+.+++||.... ..+..+.+|...+..+.++ +++.++
T Consensus 185 ~~----------------~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~-~~g~~l 245 (420)
T 4gga_A 185 MT----------------SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHL 245 (420)
T ss_dssp EC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEE
T ss_pred Ee----------------CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec-CCCCee
Confidence 32 466688888775 679999999999999998875 4566788999999999997 889999
Q ss_pred EEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCC-EEEE--EeCCCCEEEEeCCCCCCccccCCcccccC
Q 013436 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLIS--NGKDQAIKLWDIRKMSSNASCNLGFRSYE 362 (443)
Q Consensus 286 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (443)
++++.|+.+++||..........+.....|...|.+++|+|++. ++++ |+.|++|++||+++
T Consensus 246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t--------------- 310 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--------------- 310 (420)
T ss_dssp EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---------------
T ss_pred eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---------------
Confidence 99999999999999855444456677888999999999999654 5554 34799999999998
Q ss_pred cccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee--CCCeEEEEEccChhhhhHhH
Q 013436 363 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~--~dg~v~iwd~~~g~~~~~~~ 437 (443)
+..+..+..|.. +..+. |+|+++.+++++ .||.|+|||+.+++++..++
T Consensus 311 -------------------~~~~~~~~~~~~---v~~~~----~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~ 361 (420)
T 4gga_A 311 -------------------GACLSAVDAHSQ---VCSIL----WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK 361 (420)
T ss_dssp -------------------TEEEEEEECSSC---EEEEE----EETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC
T ss_pred -------------------cccceeeccccc---eeeee----ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc
Confidence 555666666653 23334 445788877754 79999999999998876653
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.3e-31 Score=241.33 Aligned_cols=238 Identities=11% Similarity=0.095 Sum_probs=196.0
Q ss_pred CccccCCCCceEEEEECCCCC-EEEEEECCCeEEEEEC-CCCeEEEEeeecCC--ccceEEEEEECCCCCeEEEEECCCe
Q 013436 117 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDV-ERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYASMSPI 192 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~-~l~~g~~d~~i~iwd~-~~~~~~~~~~~~~~--~~~~v~~i~~s~~~~~l~~~~~dg~ 192 (443)
...+.+|...|.+++|+|+++ +|++|+.||.|++||+ .++.. ..... |...|.+++|+| +.+|++++.|+.
T Consensus 49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~ 123 (342)
T 1yfq_A 49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DDKLIAASWDGL 123 (342)
T ss_dssp EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TTEEEEEETTSE
T ss_pred ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CCEEEEEcCCCe
Confidence 445668999999999999999 9999999999999999 87744 23455 888999999999 999999999999
Q ss_pred EEEEECCC---------CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCC-Ce--
Q 013436 193 VHIVDVGS---------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NK-- 260 (443)
Q Consensus 193 i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-~~-- 260 (443)
|++||+.+ ++...... |...|.+++|+|++ +++++.++.|++||+++ +.
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~ 184 (342)
T 1yfq_A 124 IEVIDPRNYGDGVIAVKNLNSNNTK-----------------VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN 184 (342)
T ss_dssp EEEECHHHHTTBCEEEEESCSSSSS-----------------SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC
T ss_pred EEEEcccccccccccccCCeeeEEe-----------------eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc
Confidence 99999876 33322221 44489999999887 99999999999999988 54
Q ss_pred eeEEeeccCCCeEEEEEeCC-CCCEEEEeeCCCeEEEEecccC--CCCCceeeeecCCCC---------CeEEEEECCCC
Q 013436 261 LSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCL--NVKGKPAGVLMGHLE---------GITFIDSRGDG 328 (443)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~-~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~---------~v~~~~~~~~~ 328 (443)
.......|...+.+++|+ + +++++++++.||.|++||++.. .........+..|.. .|++++|+|++
T Consensus 185 ~~~~~~~~~~~i~~i~~~-~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 263 (342)
T 1yfq_A 185 GTIEESGLKYQIRDVALL-PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp CEEEECSCSSCEEEEEEC-SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred ceeeecCCCCceeEEEEC-CCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC
Confidence 333445788899999998 6 8899999999999999999832 111267777777755 99999999999
Q ss_pred CEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEecc-ceeeeeeEEEecCCcc
Q 013436 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYS 407 (443)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s 407 (443)
++|++++.||.|++||+++ .+.+..+.+| ...+..+.
T Consensus 264 ~~l~~~~~dg~i~vwd~~~----------------------------------~~~~~~~~~~h~~~v~~~~-------- 301 (342)
T 1yfq_A 264 KFLYTAGSDGIISCWNLQT----------------------------------RKKIKNFAKFNEDSVVKIA-------- 301 (342)
T ss_dssp CCEEEEETTSCEEEEETTT----------------------------------TEEEEECCCCSSSEEEEEE--------
T ss_pred CEEEEecCCceEEEEcCcc----------------------------------HhHhhhhhcccCCCceEec--------
Confidence 9999999999999999998 5667777777 64433322
Q ss_pred CCccEEEEeeCCCe
Q 013436 408 TGQKYIYTGSHDSC 421 (443)
Q Consensus 408 ~d~~~l~tg~~dg~ 421 (443)
|++++|++|+.||.
T Consensus 302 ~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 302 CSDNILCLATSDDT 315 (342)
T ss_dssp ECSSEEEEEEECTH
T ss_pred CCCCeEEEEecCCc
Confidence 48999999999998
No 97
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.3e-31 Score=243.03 Aligned_cols=281 Identities=16% Similarity=0.143 Sum_probs=188.7
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE-EEECCCeEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHI 195 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-~~~~dg~i~i 195 (443)
......|...|++++|+|||++|++|+.++ ++||++.++....... .. .+..+++.++++.++ +++.|+.|++
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE-MR----HLSKVRMLHRTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE-CS----CCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee-cC----CeEEEEEcCCCCEEEEEECCccEEEE
Confidence 335678999999999999999999998765 8899998875443321 11 377788999888774 5677899999
Q ss_pred EECCCCceeccccceecccCceeec----------------cC----CCCceecEEEEEEeCCCCEEEE--EecCCeEEE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSA----------------AD----DGGYSFGIFSLKFSTDGRELVA--GSSDDCIYV 253 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~----------------~~----~~~~~~~i~~l~~~~~~~~l~~--~~~dg~i~i 253 (443)
||+.+++.............+.+.. .. ......+...+++++ .++++ |+.+|.|++
T Consensus 86 Wd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 86 WDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHI 163 (355)
T ss_dssp EETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEE
T ss_pred EECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEE
Confidence 9999887654332211100000000 00 000011233344555 45555 578999999
Q ss_pred EECCCCe----------------eeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCe-EEEEecccCCCCCceeeeec-C-
Q 013436 254 YDLEANK----------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-CKVWDRRCLNVKGKPAGVLM-G- 314 (443)
Q Consensus 254 wd~~~~~----------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~-~- 314 (443)
||+++++ .+..+.+|...|++++|+ +++++|++|+.|++ |++||++ +++++..+. +
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s-~~g~~l~s~s~d~~~v~iwd~~----~~~~~~~~~~g~ 238 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN-RKSDMVATCSQDGTIIRVFKTE----DGVLVREFRRGL 238 (355)
T ss_dssp EECCC------------------CCEEECCCSSCEEEEEEC-TTSSEEEEEETTCSEEEEEETT----TCCEEEEEECTT
T ss_pred EECCCCCccccccccccccccCcccEEEEccCCceEEEEEC-CCCCEEEEEeCCCCEEEEEECC----CCcEEEEEEcCC
Confidence 9998865 267788999999999998 79999999999998 9999998 888998888 5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCc------ccccCcccccccCCCCCCcccCCCCeeEEEE
Q 013436 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG------FRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (443)
Q Consensus 315 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (443)
|...|++++|+|++++|++++.|++|++||++........... .....|.+....++
T Consensus 239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 301 (355)
T 3vu4_A 239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS----------------- 301 (355)
T ss_dssp CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECC-----------------
T ss_pred CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEec-----------------
Confidence 9999999999999999999999999999999875422211000 00011111000000
Q ss_pred eccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhh
Q 013436 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
..+.. ....+ +|++|+++|++++.||.+++|++..++..
T Consensus 302 ~~~~~--~~~~~----a~~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 302 VDKHV--RGCKI----AWISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp CCTTC--CCCEE----EESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred cCCCC--CceEE----EEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 00100 01122 36669999999999999999999876643
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-31 Score=243.53 Aligned_cols=217 Identities=14% Similarity=0.168 Sum_probs=174.1
Q ss_pred CccccCCCCceEEEEECC--CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC--CCeEEEEECCCe
Q 013436 117 PWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPI 192 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~--~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~~dg~ 192 (443)
...+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++... ......+|...|.+++|+|+ +.+|++++.|+.
T Consensus 50 ~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 456789999999999986 4899999999999999999876311 12235678889999999998 789999999999
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC-----------------CCEEEEEecCCeEEEEE
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----------------GRELVAGSSDDCIYVYD 255 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-----------------~~~l~~~~~dg~i~iwd 255 (443)
|++||+..+........ ..+|...|.+++|+|+ +++|++|+.|+.|++||
T Consensus 129 i~lwd~~~~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd 195 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKI-------------NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK 195 (316)
T ss_dssp EEEEEECSSSCEEECCB-------------TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEE
T ss_pred EEEEecCCCCCcceeee-------------eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEE
Confidence 99999987532111111 1246668899999987 46899999999999999
Q ss_pred CCCC---eeeEEeeccCCCeEEEEEeCCC---CCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCC
Q 013436 256 LEAN---KLSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (443)
Q Consensus 256 ~~~~---~~~~~~~~~~~~v~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 329 (443)
++.. +++..+.+|...|.+++|+|.. +.+|++++.|++|++||++...........+..|...|.+++|+|+++
T Consensus 196 ~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 275 (316)
T 3bg1_A 196 EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN 275 (316)
T ss_dssp ECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC
T ss_pred eCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC
Confidence 9765 4566788999999999998432 379999999999999998732111112334567889999999999999
Q ss_pred EEEEEeCCCCEEEEeCCC
Q 013436 330 YLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~ 347 (443)
+|++++.|+.|+||+...
T Consensus 276 ~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 276 ILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEESSSCEEEEEECT
T ss_pred EEEEEcCCCeEEEEEECC
Confidence 999999999999999864
No 99
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=2.2e-31 Score=249.12 Aligned_cols=248 Identities=10% Similarity=0.050 Sum_probs=168.9
Q ss_pred ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEE--eeecCCccceEEEEEECC--------CCCeEEEEEC
Q 013436 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK--DILAKSLRWTVTDTSLSP--------DQRHLVYASM 189 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~i~~s~--------~~~~l~~~~~ 189 (443)
...|...+....+++++.+|++|+.|++|+|||+.++..... .....+|...|.+++|+| |+++||+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 345566666667777888999999999999999998865432 335678999999999998 7899999999
Q ss_pred CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecCCeEEEEECCCCeeeEEe---
Q 013436 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRI--- 265 (443)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~--- 265 (443)
|++|+|||+.++....... +|..+|.+++|+|++. +|++|+.||.|++||+++++.....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~----------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGY----------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp TSEEEEEEEETTEEEEEEE----------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--------
T ss_pred CCeEEEEECCCCceeeeec----------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccccc
Confidence 9999999998765432211 2445899999999874 7999999999999999887543221
Q ss_pred ----------------------eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEE
Q 013436 266 ----------------------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (443)
Q Consensus 266 ----------------------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 323 (443)
.+|...+.++.|+++++..|++++.|+.+++||+. .+.....+..|...+..+.
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~----~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF----ANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------C
T ss_pred CCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc----cCCCCceEeeecCccccEE
Confidence 35778899999988899999999999999999997 4444444444444433333
Q ss_pred E------------------CC--CCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCe
Q 013436 324 S------------------RG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (443)
Q Consensus 324 ~------------------~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (443)
+ +| ++.++++++.||.|+|||+.+. +
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~----------------------------------~ 350 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK----------------------------------D 350 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT----------------------------------T
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC----------------------------------c
Confidence 2 22 3345677888999999999883 3
Q ss_pred eEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
.+..+.+|.. .+. +.+|||||++||+++.|| +.+|.+.
T Consensus 351 ~~~~~~~~~~--~V~----svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 351 SNSIPIQLGM--PIV----DFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCEEEEECSS--CEE----EEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEecCCCC--cEE----EEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 3445555653 233 334667999999998777 5566553
No 100
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.2e-29 Score=241.87 Aligned_cols=206 Identities=14% Similarity=0.141 Sum_probs=173.5
Q ss_pred ccCCCCceEEEEECCCCCEE-EEEECCCeEEEEECC--CCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 120 VDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l-~~g~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
..+|.+.|++++|+|++++| ++|+.||.|+|||+. ++..+.... ...|...|.+++|+|++++|++++.+|.|++|
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 45788999999999999996 889999999999998 775554432 23556789999999999999999999999999
Q ss_pred ECCCCceec-cccceecccCceeeccCCCCceecEEEEEEeCC---CCEEEEEecCCeEEEEECCCCeeeEE-eeccCCC
Q 013436 197 DVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSD 271 (443)
Q Consensus 197 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~ 271 (443)
++.++.... .... ..+|...|.+++|+|+ +++|++|+.|+.|++||+++++.+.. +.+|...
T Consensus 177 ~~~~~~~~~~~~~~-------------~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 177 DINSIPEEKFTQEP-------------ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp ETTSCCCSSCCCCC-------------SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred ecCCccccccccee-------------eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 998776542 1111 1135668999999999 99999999999999999999988877 5589999
Q ss_pred eEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC-------------------------CCCCeEEEEECC
Q 013436 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------------------------HLEGITFIDSRG 326 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------------------~~~~v~~~~~~~ 326 (443)
|.+++|+ ++++|++++.|+.|++||++ .++.+..+.. ....|..++|+|
T Consensus 244 v~~~~~s--d~~~l~s~~~d~~v~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 244 VSSICCG--KDYLLLSAGGDDKIFAWDWK----TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp EEEEEEC--STTEEEEEESSSEEEEEETT----TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred eEEEEEC--CCCEEEEEeCCCeEEEEECC----CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 9999997 89999999999999999998 6777666652 235799999999
Q ss_pred CCCEEEEEe-CCCCEEEEeC
Q 013436 327 DGRYLISNG-KDQAIKLWDI 345 (443)
Q Consensus 327 ~~~~l~s~~-~dg~i~iwd~ 345 (443)
++++|++++ .|+.|++||+
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEe
Confidence 999999998 8999999999
No 101
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.7e-31 Score=248.01 Aligned_cols=202 Identities=13% Similarity=0.107 Sum_probs=162.2
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccc-----eEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
+|...|.+++|||||++||+++.||.|+|||.++ .+.. .. |.. .|.+++|||||++||+|+.||+|+||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~---l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN---LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE---CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee---cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 5688999999999999999999999999999654 3332 22 333 59999999999999999999999999
Q ss_pred ECCCCceecc--ccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee---eEEee-ccCC
Q 013436 197 DVGSGTMESL--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRIL-AHTS 270 (443)
Q Consensus 197 d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~~~~ 270 (443)
|+.++..... ..+... .....+|...|.+++|+|+| +++++.|+.|++||+..++. ..++. +|..
T Consensus 157 d~~~~~l~~~~~i~l~ti-------~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSI-------RLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp ECCCCTTTCCCCEEEEEE-------ECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred ECCCCccccccceeeeee-------ecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 9998753110 000000 00112577799999999999 88889999999999988773 34563 7889
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEE--CCCCCEEEEEeCCCCEEEEeCCC
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS--RGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.|.+++|+ ++.|++++ ++.|++||+. .+.......+|...|..++| +|++..|++++.||+ ++|....
T Consensus 228 ~V~svaFs---g~~LASa~-~~tIkLWd~~----~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~ 297 (588)
T 2j04_A 228 KITDLKIV---DYKVVLTC-PGYVHKIDLK----NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE 297 (588)
T ss_dssp CCCCEEEE---TTEEEEEC-SSEEEEEETT----TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS
T ss_pred cEEEEEEE---CCEEEEEe-CCeEEEEECC----CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc
Confidence 99999997 57888887 6999999997 55553444489999999999 999999999999999 9999873
No 102
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-31 Score=272.50 Aligned_cols=283 Identities=16% Similarity=0.115 Sum_probs=203.2
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEE-Eee--e-----cCCccceEEEEEECCCCCeEEEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-KDI--L-----AKSLRWTVTDTSLSPDQRHLVYA 187 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~-~~~--~-----~~~~~~~v~~i~~s~~~~~l~~~ 187 (443)
..+.+.+|...+..++|+|++++||+|+.|++|++||+.++.... ... . ..+|...|.+++|+||+++||+|
T Consensus 427 ~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsg 506 (902)
T 2oaj_A 427 KDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVS 506 (902)
T ss_dssp CCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEE
T ss_pred CCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEE
Confidence 445678888889999999999999999999999999998873100 000 0 12688899999999999999999
Q ss_pred ECCCeEEEEECCCCceecc----------c-----cceecccCc-------------ee-eccCCCCceecEEEEEEeCC
Q 013436 188 SMSPIVHIVDVGSGTMESL----------A-----NVTEIHDGL-------------DF-SAADDGGYSFGIFSLKFSTD 238 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~----------~-----~~~~~~~~~-------------~~-~~~~~~~~~~~i~~l~~~~~ 238 (443)
+.||+|+|||+.+++.... . .+....... .+ ......+|...|++++|+||
T Consensus 507 s~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd 586 (902)
T 2oaj_A 507 IETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI 586 (902)
T ss_dssp ETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT
T ss_pred ecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC
Confidence 9999999999987632100 0 000000000 00 01122458889999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCeeeEE-----ee-ccCCCeEEEEEe-----CCC--CCEEEEeeCCCeEEEEecccCCCC
Q 013436 239 GRELVAGSSDDCIYVYDLEANKLSLR-----IL-AHTSDVNTVCFG-----DES--GHLIYSGSDDNLCKVWDRRCLNVK 305 (443)
Q Consensus 239 ~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~-~~~~~v~~i~~~-----~~~--~~~l~~~~~d~~i~iwd~~~~~~~ 305 (443)
| +||+|+.|++|++||++++..+.. +. +|...|++++|+ |.. +.+|++|+.|++|++||+.... +
T Consensus 587 G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~-~ 664 (902)
T 2oaj_A 587 G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPAS-G 664 (902)
T ss_dssp S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECG-G
T ss_pred c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCC-C
Confidence 9 999999999999999988876542 32 788999999998 543 5899999999999999992111 6
Q ss_pred CceeeeecCCC-----CCeEEEE-EC----------------------CCCCEEEEEeCCCCEEEEeCCCCCCccccCCc
Q 013436 306 GKPAGVLMGHL-----EGITFID-SR----------------------GDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (443)
Q Consensus 306 ~~~~~~~~~~~-----~~v~~~~-~~----------------------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (443)
++....+.+|. .+|..++ |+ +++.+|+++ +..|+||++.+
T Consensus 665 g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~---------- 732 (902)
T 2oaj_A 665 GKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGK---------- 732 (902)
T ss_dssp GCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTC----------
T ss_pred CcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCcc----------
Confidence 67777777663 6777776 65 445444444 77899999988
Q ss_pred ccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeee---EEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI---RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
.+......+|......+ ...-...|++++..|++++.||.|++|++.+++++.
T Consensus 733 ------------------------~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~ 788 (902)
T 2oaj_A 733 ------------------------SKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQM 788 (902)
T ss_dssp ------------------------CCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEE
T ss_pred ------------------------ccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHh
Confidence 34454554444211111 100112277789999999999999999999998876
Q ss_pred Hh
Q 013436 435 CR 436 (443)
Q Consensus 435 ~~ 436 (443)
.+
T Consensus 789 ~~ 790 (902)
T 2oaj_A 789 SE 790 (902)
T ss_dssp EE
T ss_pred hc
Confidence 54
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1e-29 Score=233.30 Aligned_cols=241 Identities=12% Similarity=0.100 Sum_probs=191.6
Q ss_pred cceeecccccC----CCccccCCCCceEEEEECC--CCCEEEEEECCCeEEEEECCCCeE------EEEeeecCCccceE
Q 013436 105 CHMLSRYLPVN----GPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWK------IQKDILAKSLRWTV 172 (443)
Q Consensus 105 ~~~~~~~~~~~----~~~~~~~h~~~v~~~~~s~--~~~~l~~g~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~v 172 (443)
...++...... ....+.+|...|.+++|+| ++++|++|+.||.|++||+.++.. .........|...|
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 113 (351)
T 3f3f_A 34 HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSL 113 (351)
T ss_dssp EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCE
T ss_pred eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCce
Confidence 34455544332 3445678999999999999 699999999999999999987621 12223455788899
Q ss_pred EEEEECCC--CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC---CCEEEEEec
Q 013436 173 TDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS 247 (443)
Q Consensus 173 ~~i~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~~~~ 247 (443)
.+++|+|+ +.+|++++.||.|++||+.+++............. ......+|...+.+++|+|+ +..+++++.
T Consensus 114 ~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 190 (351)
T 3f3f_A 114 YSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV---LSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL 190 (351)
T ss_dssp EEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES---CSCCCSSCSCCCEEEEECCCSSSCCEEEEEET
T ss_pred eEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc---cccccCCcccceeEEEeccCCCCCcEEEEecC
Confidence 99999999 99999999999999999998876554443222111 11122356678999999997 899999999
Q ss_pred CCeEEEEECCCCee--eEEeeccCCCeEEEEEeCCCC----CEEEEeeCCCeEEEEecccCCC-----------------
Q 013436 248 DDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWDRRCLNV----------------- 304 (443)
Q Consensus 248 dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~----------------- 304 (443)
++.+.+|+...++. +..+.+|...|++++|+ +++ ++|++|+.||.|++||++....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 269 (351)
T 3f3f_A 191 EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS 269 (351)
T ss_dssp TEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred CCcEEEEccCCCceeeeeecCCCCcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCC
Confidence 99998888877764 66777899999999998 565 7999999999999999983210
Q ss_pred -------------------------CCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 305 -------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 305 -------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
....+..+.+|...|++++|+|++++|++++.||.|++||+.+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ---------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 125677788999999999999999999999999999999999844
No 104
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=8.3e-31 Score=248.77 Aligned_cols=211 Identities=17% Similarity=0.196 Sum_probs=168.7
Q ss_pred CccceEEEEEECC-CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEE
Q 013436 167 SLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVA 244 (443)
Q Consensus 167 ~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~ 244 (443)
.|...|++|+|+| ++++||+|+.||.|+|||+.+++...... ..+|...|.+|+|+| ++.+|++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~--------------~~gH~~~V~~l~f~p~~~~~l~s 182 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK--------------GIGAGGSITGLKFNPLNTNQFYA 182 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC--------------CCSSSCCCCEEEECSSCTTEEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE--------------ccCCCCCEEEEEEeCCCCCEEEE
Confidence 4566799999999 56789999999999999998776433322 225778999999998 7899999
Q ss_pred EecCCeEEEEECCCCeeeEEeec--cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEE
Q 013436 245 GSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (443)
Q Consensus 245 ~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 322 (443)
|+.||+|++||++++........ +...+.+++|+ +++++|++|+.||.|++||++ ++.+..+.+|...|+++
T Consensus 183 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~-----~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMD-----GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp ECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESS-----SCBCCCSBCCSSCEEEE
T ss_pred EeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccC-----cceeEEEecccceEEee
Confidence 99999999999987654333332 34467899998 889999999999999999985 46677888999999999
Q ss_pred EECCCCC-EEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEE
Q 013436 323 DSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (443)
Q Consensus 323 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (443)
+|+|++. +|++++.|+.|+|||+++.+.... +....+|... +
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-------------------------------~~~~~~h~~~------v 299 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKAS-------------------------------FLYSLPHRHP------V 299 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSC-------------------------------CSBCCBCSSC------E
T ss_pred eecCCCceEEEEecCcceeeEEecccccccce-------------------------------EEEeeecccc------c
Confidence 9999876 788999999999999998543222 1122345432 2
Q ss_pred ecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 402 ~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
.+.+|+|+|++|++|+.||.|+|||+.+++...
T Consensus 300 ~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 332 (435)
T 4e54_B 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332 (435)
T ss_dssp EECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred cceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence 345688899999999999999999999877543
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-30 Score=242.52 Aligned_cols=237 Identities=10% Similarity=0.005 Sum_probs=175.3
Q ss_pred CCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
+....+.+|...|++++|+|+| .++.+.+|+.+.. .. ....|...|.+++|||+|+.||+++.||.|+
T Consensus 43 ~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~----~~-~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~ 110 (588)
T 2j04_A 43 KYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN----GL-LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVS 110 (588)
T ss_dssp CCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS----CS-STTSCSCCEEEEEECSSSSCEEEEETTSCEE
T ss_pred cccceecCCCccEEEEEECCCC-------CcceEEEEeCCCc----eE-eecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 3345557888888888888888 4555555554322 11 1224467899999999999999999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee-------eEEe--
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-------SLRI-- 265 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~-- 265 (443)
+||..+ ...... +... -....|.+++|||||++|++|+.||+|++||+.++.. +..+
T Consensus 111 iwd~~~--~l~~l~----~~~~--------~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~ 176 (588)
T 2j04_A 111 VFKDNK--MLTNLD----SKGN--------LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL 176 (588)
T ss_dssp EEETTE--EEEECC----CSSC--------STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC
T ss_pred EEeCCc--eeeecc----CCCc--------cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec
Confidence 999544 111111 1000 0012599999999999999999999999999998753 5665
Q ss_pred --eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCc---eeeee-cCCCCCeEEEEECCCCCEEEEEeCCCC
Q 013436 266 --LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK---PAGVL-MGHLEGITFIDSRGDGRYLISNGKDQA 339 (443)
Q Consensus 266 --~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~ 339 (443)
.+|...|.+++|+ |++ +++++.|+.|++||+. ... ....+ .+|...|.+++|+ ++.||+++ +++
T Consensus 177 ~~~gh~~~V~sVawS-Pdg--Laass~D~tVrlWd~~----~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t 246 (588)
T 2j04_A 177 SDAGSKDWVTHIVWY-EDV--LVAALSNNSVFSMTVS----ASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY 246 (588)
T ss_dssp SCTTCCCCEEEEEEE-TTE--EEEEETTCCEEEECCC----SSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE
T ss_pred ccccccccEEEEEEc-CCc--EEEEeCCCeEEEEECC----CCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe
Confidence 5677899999999 677 7888999999999997 333 23455 4788999999999 68899887 699
Q ss_pred EEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCc--cCCccEEEEee
Q 013436 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY--STGQKYIYTGS 417 (443)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~d~~~l~tg~ 417 (443)
|++||+.+ .+......+|......+ .| +||+..|++++
T Consensus 247 IkLWd~~~----------------------------------~~~~~~~~gh~~~V~~v------a~~~s~d~~~La~a~ 286 (588)
T 2j04_A 247 VHKIDLKN----------------------------------YSISSLKTGSLENFHII------PLNHEKESTILLMSN 286 (588)
T ss_dssp EEEEETTT----------------------------------TEEEEEECSCCSCCCEE------EETTCSSCEEEEECS
T ss_pred EEEEECCC----------------------------------CeEEEEEcCCCceEEEE------EeeeCCCCCEEEEEc
Confidence 99999987 23322232676443332 35 77999999999
Q ss_pred CCCeEEEEEcc
Q 013436 418 HDSCVYVYDLV 428 (443)
Q Consensus 418 ~dg~v~iwd~~ 428 (443)
+||+ ++|...
T Consensus 287 edG~-klw~~d 296 (588)
T 2j04_A 287 KTSY-KVLLED 296 (588)
T ss_dssp SCEE-EEEESS
T ss_pred CCCC-EEEeec
Confidence 9999 999973
No 106
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=3e-29 Score=252.11 Aligned_cols=228 Identities=21% Similarity=0.284 Sum_probs=189.3
Q ss_pred cccceeecccccC-----CCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEE
Q 013436 103 DCCHMLSRYLPVN-----GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (443)
Q Consensus 103 ~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~ 177 (443)
+....+|...... ....+.+|...|.+++|+|++++|++|+.|++|+|||+.++..+.. ..+|...|.+++|
T Consensus 404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~---~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR---FVGHTKDVLSVAF 480 (694)
T ss_dssp TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECCSSCEEEEEE
T ss_pred CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE---EeCCCCCEEEEEE
Confidence 3444455543322 2346789999999999999999999999999999999999866553 4578889999999
Q ss_pred CCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC--CEEEEEecCCeEEEEE
Q 013436 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--RELVAGSSDDCIYVYD 255 (443)
Q Consensus 178 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~~~~~dg~i~iwd 255 (443)
+|++++|++++.|++|++||+.......... ...+|...|.+++|+|++ ..|++|+.|+.|++||
T Consensus 481 s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd 547 (694)
T 3dm0_A 481 SLDNRQIVSASRDRTIKLWNTLGECKYTISE-------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547 (694)
T ss_dssp CTTSSCEEEEETTSCEEEECTTSCEEEEECS-------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred eCCCCEEEEEeCCCEEEEEECCCCcceeecc-------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEE
Confidence 9999999999999999999986543322111 123577789999999987 5899999999999999
Q ss_pred CCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 013436 256 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (443)
Q Consensus 256 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 335 (443)
++++++...+.+|...|++++|+ +++++|++|+.|+.|++||++ .++.+..+.. ...|.+++|+|++.+|++++
T Consensus 548 ~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~sg~~Dg~i~iwd~~----~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~ 621 (694)
T 3dm0_A 548 LSNCKLRSTLAGHTGYVSTVAVS-PDGSLCASGGKDGVVLLWDLA----EGKKLYSLEA-NSVIHALCFSPNRYWLCAAT 621 (694)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSBCEEEETT----TTEEEECCBC-SSCEEEEEECSSSSEEEEEE
T ss_pred CCCCcEEEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECC----CCceEEEecC-CCcEEEEEEcCCCcEEEEEc
Confidence 99999999999999999999998 889999999999999999998 7777777654 46899999999998887776
Q ss_pred CCCCEEEEeCCCCCCccc
Q 013436 336 KDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~ 353 (443)
++.|+|||+++......
T Consensus 622 -~~~i~iwd~~~~~~~~~ 638 (694)
T 3dm0_A 622 -EHGIKIWDLESKSIVED 638 (694)
T ss_dssp -TTEEEEEETTTTEEEEE
T ss_pred -CCCEEEEECCCCCChhh
Confidence 55699999998655433
No 107
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=7.7e-31 Score=244.25 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=174.8
Q ss_pred ccceeeccccc--CCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC
Q 013436 104 CCHMLSRYLPV--NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (443)
Q Consensus 104 ~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~ 181 (443)
....++..... .....+.+|...|.+++|+|++++|++|+.|+.|++||+.++...........|...|.+++|+|++
T Consensus 33 ~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (377)
T 3dwl_C 33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE 112 (377)
T ss_dssp SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS
T ss_pred CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC
Confidence 33445555544 5667788999999999999999999999999999999999875122233456788899999999999
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC----
Q 013436 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---- 257 (443)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~---- 257 (443)
++|++++.|+.|++||+.+++......... ..|...|.+++|+|++++|++++.|+.|++||++
T Consensus 113 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 180 (377)
T 3dwl_C 113 DKFAVGSGARVISVCYFEQENDWWVSKHLK------------RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDV 180 (377)
T ss_dssp SCCEEEESSSCEEECCC-----CCCCEEEC------------SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSC
T ss_pred CEEEEEecCCeEEEEEECCcccceeeeEee------------cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEeccc
Confidence 999999999999999998876321111111 1256689999999999999999999999999985
Q ss_pred --------------CCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCce----eeeecCCCCCe
Q 013436 258 --------------ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP----AGVLMGHLEGI 319 (443)
Q Consensus 258 --------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~v 319 (443)
.++++..+ .|...|.+++|+ +++++|++++.|+.|++||++ .+.. +..+.+|...|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-p~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~v 254 (377)
T 3dwl_C 181 DAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS-PSGNALAYAGHDSSVTIAYPS----APEQPPRALITVKLSQLPL 254 (377)
T ss_dssp C-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC-TTSSCEEEEETTTEEC-CEEC----STTSCEEECCCEECSSSCE
T ss_pred CCCccccccccccchhhhhhcc-cCCceEEEEEEC-CCCCEEEEEeCCCcEEEEECC----CCCCcceeeEeecCCCCce
Confidence 34555666 899999999998 789999999999999999998 5555 77888999999
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 320 TFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.+++|+|++++|++++.++ +.+|+...
T Consensus 255 ~~~~~s~~~~~l~~~~~~~-~~~~~~~~ 281 (377)
T 3dwl_C 255 RSLLWANESAIVAAGYNYS-PILLQGNE 281 (377)
T ss_dssp EEEEEEETTEEEEEESSSS-EEEECCCC
T ss_pred EEEEEcCCCCEEEEEcCCc-EEEEEeCC
Confidence 9999999999998887665 45777653
No 108
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=7e-29 Score=233.18 Aligned_cols=209 Identities=19% Similarity=0.291 Sum_probs=174.3
Q ss_pred cCCCCceEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC---CCeEEEEECCCeEEEE
Q 013436 121 DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD---QRHLVYASMSPIVHIV 196 (443)
Q Consensus 121 ~~h~~~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~~~~~dg~i~iw 196 (443)
.+|...|.+++|+| ++.+|++++.||.|++||+.++....... +...+.++.|+|. +.++++++.++.|++|
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 36999999999999 77899999999999999999986665432 4456999999985 4599999999999999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecCCeEEEEECCCCe-eeEEe---------
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK-LSLRI--------- 265 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~--------- 265 (443)
|+.+++...... +|...|.+++|+|++. .|++|+.||.|++||++++. .+..+
T Consensus 172 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 172 DLKSGSCSHILQ----------------GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp ESSSSCCCEEEC----------------CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred eCCCcceeeeec----------------CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence 998876543322 3566899999999998 58999999999999998775 34444
Q ss_pred ------eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCC------------------------------------
Q 013436 266 ------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN------------------------------------ 303 (443)
Q Consensus 266 ------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------------------------------ 303 (443)
..|...|.+++|+ +++++|++++.|+.|++||++...
T Consensus 236 ~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFT-SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314 (408)
T ss_dssp CTTTSSCSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred eeccccccccCceeEEEEc-CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence 4688999999998 789999999999999999987432
Q ss_pred -------CCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 304 -------VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 304 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
..++.+..+.+|...|++++|+|++++|++++.||.|++||+++.+.
T Consensus 315 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 315 TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 12355667788999999999999999999999999999999998543
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.9e-28 Score=229.20 Aligned_cols=259 Identities=14% Similarity=0.114 Sum_probs=199.0
Q ss_pred eecccccCCCccccCCCCceEEEEECCCCCEE-EEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE
Q 013436 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 186 (443)
++.....+....+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..... +. .+.+++|+|++++|++
T Consensus 16 v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~---~~-~v~~~~~spdg~~l~~ 90 (391)
T 1l0q_A 16 VIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---GS-SPQGVAVSPDGKQVYV 90 (391)
T ss_dssp EEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---SS-SEEEEEECTTSSEEEE
T ss_pred EEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC---CC-CccceEECCCCCEEEE
Confidence 33333333344455554 58999999999977 5666899999999999876654322 22 6999999999998865
Q ss_pred EE-CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEE-EEEecCCeEEEEECCCCeeeEE
Q 013436 187 AS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLR 264 (443)
Q Consensus 187 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~ 264 (443)
++ .++.|++||+.+++....... ...+.+++|+|+++.+ ++++.++.|++||+.+++.+..
T Consensus 91 ~~~~~~~v~v~d~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 91 TNMASSTLSVIDTTSNTVAGTVKT-----------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEEC-----------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EECCCCEEEEEECCCCeEEEEEeC-----------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 55 669999999998876543321 1268899999999977 6788899999999999998888
Q ss_pred eeccCCCeEEEEEeCCCCCEE-EEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe---CCCCE
Q 013436 265 ILAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG---KDQAI 340 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~dg~i 340 (443)
+..+ ..+.+++|+ ++++.+ ++++.++.|++||++ .++.+..+. +...+.+++|+|++++|++++ .++.|
T Consensus 154 ~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~----~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v 226 (391)
T 1l0q_A 154 VSVG-RSPKGIAVT-PDGTKVYVANFDSMSISVIDTV----TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTV 226 (391)
T ss_dssp EECC-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETT----TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred EecC-CCcceEEEC-CCCCEEEEEeCCCCEEEEEECC----CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcE
Confidence 7655 457999998 666665 677889999999998 666666665 456889999999999998887 68999
Q ss_pred EEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEE-EEeeCC
Q 013436 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI-YTGSHD 419 (443)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~tg~~d 419 (443)
++||+++ .+.+..+..|.. .. +..|+|++++| ++++.|
T Consensus 227 ~~~d~~~----------------------------------~~~~~~~~~~~~---~~----~~~~s~dg~~l~~s~~~d 265 (391)
T 1l0q_A 227 SMIDTGT----------------------------------NKITARIPVGPD---PA----GIAVTPDGKKVYVALSFX 265 (391)
T ss_dssp EEEETTT----------------------------------TEEEEEEECCSS---EE----EEEECTTSSEEEEEETTT
T ss_pred EEEECCC----------------------------------CeEEEEEecCCC---cc----EEEEccCCCEEEEEcCCC
Confidence 9999987 455666666542 12 23466689877 677889
Q ss_pred CeEEEEEccChhhhhHh
Q 013436 420 SCVYVYDLVSIQILFCR 436 (443)
Q Consensus 420 g~v~iwd~~~g~~~~~~ 436 (443)
+.|++||+.+++++..+
T Consensus 266 ~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 266 NTVSVIDTATNTITATM 282 (391)
T ss_dssp TEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCcEEEEE
Confidence 99999999998876554
No 110
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=235.77 Aligned_cols=229 Identities=15% Similarity=0.181 Sum_probs=184.4
Q ss_pred ccceeeccc--ccCCCccccCCCCceEEEEECCC--CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC
Q 013436 104 CCHMLSRYL--PVNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (443)
Q Consensus 104 ~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~s~~--~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~ 179 (443)
....++... .......+.+|...|++++|+++ +++|++|+.||.|++||+.++... .......|...|.+++|+|
T Consensus 33 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~ 111 (379)
T 3jrp_A 33 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAP 111 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECC
T ss_pred CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCC
Confidence 334455554 33445677899999999999987 999999999999999999988522 2334566888999999999
Q ss_pred C--CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-------------CCCEEEE
Q 013436 180 D--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-------------DGRELVA 244 (443)
Q Consensus 180 ~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-------------~~~~l~~ 244 (443)
+ +.+|++++.|+.|++||+.++......... +|...|.+++|+| ++.+|++
T Consensus 112 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (379)
T 3jrp_A 112 HEYGPLLLVASSDGKVSVVEFKENGTTSPIIID--------------AHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 177 (379)
T ss_dssp GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE--------------CCTTCEEEEEECCCC----------CTTCEEEE
T ss_pred CCCCCEEEEecCCCcEEEEecCCCCceeeEEec--------------CCCCceEEEEEcCccccccccccCCCCCCEEEE
Confidence 9 999999999999999999887543322211 3555899999999 6999999
Q ss_pred EecCCeEEEEECCCCe----eeEEeeccCCCeEEEEEeCCC---CCEEEEeeCCCeEEEEecccCCCC-CceeeeecCCC
Q 013436 245 GSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHL 316 (443)
Q Consensus 245 ~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~ 316 (443)
++.||.|++||++++. ....+..|...|.+++|+ ++ +++|++++.||.|++||++..... ...+.....|.
T Consensus 178 ~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 256 (379)
T 3jrp_A 178 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 256 (379)
T ss_dssp EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC-CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCS
T ss_pred EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC-CCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCC
Confidence 9999999999998764 445677899999999998 66 899999999999999999832110 11222334488
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
..|++++|+|++++|++++.||.|++||++..
T Consensus 257 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 257 DVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 89999999999999999999999999999853
No 111
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=5.7e-29 Score=219.89 Aligned_cols=253 Identities=14% Similarity=0.131 Sum_probs=166.5
Q ss_pred ceEEEEECCCCC---EEEEEECCCeEEEEECCCC---eEEEEeeecC----------------------CccceEEEEEE
Q 013436 126 RAYVSQFSADGS---LFVAGFQASQIRIYDVERG---WKIQKDILAK----------------------SLRWTVTDTSL 177 (443)
Q Consensus 126 ~v~~~~~s~~~~---~l~~g~~d~~i~iwd~~~~---~~~~~~~~~~----------------------~~~~~v~~i~~ 177 (443)
.+.++.|-.-|- .+++++. ..|++|+..++ ++++...... -+...|..+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 366677766553 6777766 68999999988 3333221111 12236778888
Q ss_pred CCC----CCeEEEEECCCeEEEEECCCCceecccc--ceecccCceeecc-----CCCCceecEEEEEEeC---CCCEEE
Q 013436 178 SPD----QRHLVYASMSPIVHIVDVGSGTMESLAN--VTEIHDGLDFSAA-----DDGGYSFGIFSLKFST---DGRELV 243 (443)
Q Consensus 178 s~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~---~~~~l~ 243 (443)
+|| ++.+++++.+ +.+|++.+++...... ......-..+... ...+|...+..++|+| ++..|+
T Consensus 120 spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~La 197 (356)
T 2w18_A 120 SSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALL 197 (356)
T ss_dssp ------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred CCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEE
Confidence 888 8888887642 5556655444322210 0000000000000 0013555777888888 779999
Q ss_pred EEecCCeEEEEECCCCeeeEEeeccC---CCeEEEEEeCCCCCEE------------EEeeCCCeEEEEecccCCCCCce
Q 013436 244 AGSSDDCIYVYDLEANKLSLRILAHT---SDVNTVCFGDESGHLI------------YSGSDDNLCKVWDRRCLNVKGKP 308 (443)
Q Consensus 244 ~~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l------------~~~~~d~~i~iwd~~~~~~~~~~ 308 (443)
+|+.|++|+|||+++++++.++.+|. ..+.+++|+ +++.++ ++|+.|++|++||.. +++.
T Consensus 198 SgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS-pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~----tgk~ 272 (356)
T 2w18_A 198 GTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS-EMGLLFIVLSHPCAKESESLRSPVFQLIVINPK----TTLS 272 (356)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE-ETTEEEEEEC------------CCEEEEEEETT----TTEE
T ss_pred EecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC-CCCCEEEEeccCCCcceeeccCCCcEEEEEECC----CCEE
Confidence 99999999999999999999998654 367778898 677765 668899999999998 7777
Q ss_pred eeee-----cCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCe
Q 013436 309 AGVL-----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (443)
Q Consensus 309 ~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (443)
+..+ .+|...+.+.+++ +.++++++.|++|+|||+.+ ++
T Consensus 273 l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t----------------------------------Gk 316 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL----------------------------------GQ 316 (356)
T ss_dssp EEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT----------------------------------CS
T ss_pred EEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC----------------------------------Cc
Confidence 6554 4676665555554 78999999999999999998 67
Q ss_pred eEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEc
Q 013436 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (443)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~ 427 (443)
.+.++.+|...... ..+|||||++|++|+.|++|+|||+
T Consensus 317 ~l~tL~gH~~~vvs-----~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQHWS-----FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--CCCC-----EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCeEE-----EEEECCCCCEEEEEECCCcEEEecC
Confidence 78889888743221 1246779999999999999999996
No 112
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.2e-28 Score=223.62 Aligned_cols=228 Identities=15% Similarity=0.200 Sum_probs=181.4
Q ss_pred cccceeecccccCCCcc--ccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEee-----------------
Q 013436 103 DCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI----------------- 163 (443)
Q Consensus 103 ~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~----------------- 163 (443)
+....+|.....+.... +.+|...|++++|+|++++|++|+.||+|++||+.+++.+....
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~ 123 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS 123 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEE
Confidence 44555666655554444 45788899999999999999999999999999999886543321
Q ss_pred ---------------------ecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccC
Q 013436 164 ---------------------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (443)
Q Consensus 164 ---------------------~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (443)
...+|...+..+.+++++++|++++.|+.|++||+.+++.........
T Consensus 124 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------- 192 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF----------- 192 (318)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEE-----------
T ss_pred EEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeee-----------
Confidence 123566678899999999999999999999999998876433222111
Q ss_pred CCCceecEEEEEEeCCCCEE---EEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEe--eCCCeEEEE
Q 013436 223 DGGYSFGIFSLKFSTDGREL---VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG--SDDNLCKVW 297 (443)
Q Consensus 223 ~~~~~~~i~~l~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~~i~iw 297 (443)
..+...|.+++++|++..+ ++++.++.|++||.+........ .+...+..+.|+ +.+..++++ +.|+.|++|
T Consensus 193 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~-~~~~~~~~~sg~~d~~i~iw 269 (318)
T 4ggc_A 193 -TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWS-PHYKELISGHGFAQNQLVIW 269 (318)
T ss_dssp -CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEE-TTTTEEEEEECTTTCCEEEE
T ss_pred -cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeec-ccccceEEEEEcCCCEEEEE
Confidence 1245589999999976533 45677899999999888766554 667789999998 555555544 479999999
Q ss_pred ecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
|++ +++++..+.+|...|++++|+|++++|++++.||+|+|||+...
T Consensus 270 d~~----~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 270 KYP----TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp ETT----TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ECC----CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 998 88999999999999999999999999999999999999999763
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=7.4e-29 Score=234.93 Aligned_cols=221 Identities=13% Similarity=0.193 Sum_probs=183.0
Q ss_pred cCCCccccCCCCceEEEEECCCCC-EEEEEECCCeEEEEECCCC----eEEEEeeecCCccceEEEEEECC-CCCeEEEE
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYA 187 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~-~l~~g~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~~ 187 (443)
......+.+|...|++++|+|++. +|++|+.||.|++|++.++ ..+........|...|.+++|+| ++.+|+++
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 455667789999999999999998 9999999999999999873 22222334557888999999999 67889999
Q ss_pred ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecCCeEEEEECCC-CeeeEEe
Q 013436 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEA-NKLSLRI 265 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~ 265 (443)
+.|+.|++||++++.......... .|...|.+++|+|++. +|++|+.||.|++||+++ ..++..+
T Consensus 251 ~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~ 317 (430)
T 2xyi_A 251 ADDQKLMIWDTRNNNTSKPSHTVD-------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317 (430)
T ss_dssp ETTSEEEEEETTCSCSSSCSEEEE-------------CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred eCCCeEEEEECCCCCCCcceeEee-------------cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe
Confidence 999999999999764211111111 3556899999999887 688999999999999998 5678888
Q ss_pred eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCC----------CceeeeecCCCCCeEEEEECCCCC-EEEEE
Q 013436 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK----------GKPAGVLMGHLEGITFIDSRGDGR-YLISN 334 (443)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~ 334 (443)
..|...|.+++|+|.+..+|++++.|+.|++||++..... ...+..+.+|...|++++|+|+++ +|+++
T Consensus 318 ~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 397 (430)
T 2xyi_A 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 397 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence 8999999999999555578999999999999999842211 366777889999999999999999 89999
Q ss_pred eCCCCEEEEeCCC
Q 013436 335 GKDQAIKLWDIRK 347 (443)
Q Consensus 335 ~~dg~i~iwd~~~ 347 (443)
+.||.|+||++..
T Consensus 398 s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 398 SEDNIMQVWQMAE 410 (430)
T ss_dssp ETTSEEEEEEECH
T ss_pred ECCCCEEEeEccc
Confidence 9999999999976
No 114
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=1.1e-28 Score=226.18 Aligned_cols=240 Identities=20% Similarity=0.237 Sum_probs=183.3
Q ss_pred EEECCCe--EEEEECCCCeEEEEeeecCCccceEEEEEECCC-CCeEEEEECCCeEEEEECCCCceeccccceecccCce
Q 013436 141 AGFQASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD 217 (443)
Q Consensus 141 ~g~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 217 (443)
+|...|+ +.++...+. .+.....+.+|.+.|++|+|+|+ +++|++|+.|++|+|||+.+.+........
T Consensus 9 ~g~d~g~~~~~~~~~~~~-~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~------- 80 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTE-QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR------- 80 (340)
T ss_dssp -----------------C-EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE-------
T ss_pred cccCCCCccEEEEEccCC-ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE-------
Confidence 3434444 334444333 33333457899999999999998 689999999999999999876542211111
Q ss_pred eeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEE
Q 013436 218 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 297 (443)
Q Consensus 218 ~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iw 297 (443)
...+|...|.+++|+|++++|++++.|+.|++|+............+...+..+.++ +.+++|++++.|+.+++|
T Consensus 81 ----~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 81 ----ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp ----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEE
T ss_pred ----EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe-ecCccceeecCCCeEEEE
Confidence 112577799999999999999999999999999999999888888888899999996 888899999999999999
Q ss_pred ecccCCCCCceeeeecCCCCCeEEEEECCCC--CEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCC
Q 013436 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (443)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (443)
|... .........+|...+..++|++++ .++++++.|+.|++||+++
T Consensus 156 d~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---------------------------- 204 (340)
T 4aow_A 156 NTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN---------------------------- 204 (340)
T ss_dssp CTTS---CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT----------------------------
T ss_pred EeCC---CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC----------------------------
Confidence 9872 233445567899999999998764 5788999999999999998
Q ss_pred cccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
.+.+..+.+|...+.. + +|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 205 ------~~~~~~~~~h~~~v~~--~----~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 253 (340)
T 4aow_A 205 ------CKLKTNHIGHTGYLNT--V----TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253 (340)
T ss_dssp ------TEEEEEECCCSSCEEE--E----EECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ------CceeeEecCCCCcEEE--E----EECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence 5667788888754333 2 35669999999999999999999988776544
No 115
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3.4e-29 Score=233.71 Aligned_cols=226 Identities=12% Similarity=0.083 Sum_probs=177.0
Q ss_pred ccceeecccccCCCccc--cCCCCceEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC
Q 013436 104 CCHMLSRYLPVNGPWPV--DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (443)
Q Consensus 104 ~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~ 180 (443)
....++..........+ .+|...|.+++|+| ++++|++++.|+.|++||+.+. .+........+...|.+++|+|+
T Consensus 96 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 174 (383)
T 3ei3_B 96 GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVS 174 (383)
T ss_dssp SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETT
T ss_pred CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCC
Confidence 34445555544444444 47999999999999 7899999999999999999964 55555555566688999999999
Q ss_pred CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecCCeEEEEECCC-
Q 013436 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEA- 258 (443)
Q Consensus 181 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~- 258 (443)
+++|++++.|+.|++||+. ++...... +|...|.+++|+|+++ +|++++.|+.|++||+++
T Consensus 175 ~~~l~~~~~d~~i~i~d~~-~~~~~~~~----------------~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 237 (383)
T 3ei3_B 175 RQMLATGDSTGRLLLLGLD-GHEIFKEK----------------LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 237 (383)
T ss_dssp TTEEEEEETTSEEEEEETT-SCEEEEEE----------------CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGC
T ss_pred CCEEEEECCCCCEEEEECC-CCEEEEec----------------cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCC
Confidence 9999999999999999995 33222111 3566899999999998 999999999999999987
Q ss_pred ---CeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC-----------------CC
Q 013436 259 ---NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-----------------EG 318 (443)
Q Consensus 259 ---~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----------------~~ 318 (443)
+.++..+ .|...|.+++|+|.++++|++++.|+.|++||++ .+..+..+.+|. ..
T Consensus 238 ~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 312 (383)
T 3ei3_B 238 KDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY----DWSKPDQIIIHPHRQFQHLTPIKATWHPMYD 312 (383)
T ss_dssp CSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT----BTTSCSEEEECCBCCCTTSCCCCCEECSSSS
T ss_pred CcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC----CCccccccccccccccccccceEEeccCCCC
Confidence 5556555 7999999999983389999999999999999998 444444444332 34
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 319 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
+..++|+|++++ +++.|+.|++||+++.+.+..+
T Consensus 313 ~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l 346 (383)
T 3ei3_B 313 LIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL 346 (383)
T ss_dssp EEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred ceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence 445667777766 7778999999999987765443
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-29 Score=229.73 Aligned_cols=215 Identities=10% Similarity=0.081 Sum_probs=165.0
Q ss_pred cceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCC---------CeEEEEeeecCCccceEEEE
Q 013436 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER---------GWKIQKDILAKSLRWTVTDT 175 (443)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~v~~i 175 (443)
...++.....+....+. ...|.++.|+|+ +++|+.|++|++|+... +..+.. ....|..+|.++
T Consensus 59 ~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~ 131 (343)
T 3lrv_A 59 ALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYM 131 (343)
T ss_dssp EEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEE
T ss_pred cEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEE--eecCCCCCEEEE
Confidence 33444444444433333 456788889988 99999999999997763 322222 223556789999
Q ss_pred EECC--CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEE
Q 013436 176 SLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (443)
Q Consensus 176 ~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i 253 (443)
+|+| ++++|++++.||.|++||+.+++....... .+...|.+++|+|++.+|++|+.||.|++
T Consensus 132 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---------------~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 132 YGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA---------------KSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp ECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---------------CSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---------------CCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 9999 999999999999999999998876432211 13336999999999999999999999999
Q ss_pred EECCCCeee-EEeec-cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC---CCCCeE--EEEECC
Q 013436 254 YDLEANKLS-LRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---HLEGIT--FIDSRG 326 (443)
Q Consensus 254 wd~~~~~~~-~~~~~-~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~v~--~~~~~~ 326 (443)
||+++++.+ ..+.. |...|++++|+ +++.+|++++. +.|++||++ ..+.+..+.. |...+. +++|+|
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs-~~g~~l~s~~~-~~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFA-DNGYWMVVECD-QTVVCFDLR----KDVGTLAYPTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEEC-TTSSEEEEEES-SBEEEEETT----SSTTCBSSCCCBC-----CCEEEEECT
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEe-CCCCEEEEEeC-CeEEEEEcC----CCCcceeecccccccccccceEEEECC
Confidence 999999877 77887 99999999998 88999999995 499999998 4444433332 434443 699999
Q ss_pred CCCEEEEEeC-CCCEEEEeCCC
Q 013436 327 DGRYLISNGK-DQAIKLWDIRK 347 (443)
Q Consensus 327 ~~~~l~s~~~-dg~i~iwd~~~ 347 (443)
++++|++++. |+.|+||++..
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEecCCCCcEEEEEEcc
Confidence 9999999998 99999999976
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.8e-30 Score=257.61 Aligned_cols=229 Identities=15% Similarity=0.186 Sum_probs=186.9
Q ss_pred cceeeccc--ccCCCccccCCCCceEEEEECCC--CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC
Q 013436 105 CHMLSRYL--PVNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (443)
Q Consensus 105 ~~~~~~~~--~~~~~~~~~~h~~~v~~~~~s~~--~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~ 180 (443)
...++... .......+.+|.++|++++|+|+ +++|++|+.||.|++||+.++.. ........|...|++++|+|+
T Consensus 32 ~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~ 110 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPH 110 (753)
T ss_dssp EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCG
T ss_pred cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCC
Confidence 34455544 33445677899999999999998 99999999999999999998842 233345678889999999999
Q ss_pred --CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-------------CCCEEEEE
Q 013436 181 --QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-------------DGRELVAG 245 (443)
Q Consensus 181 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-------------~~~~l~~~ 245 (443)
++.+++++.||.|++||+.++......... +|...|.+++|+| ++..|++|
T Consensus 111 ~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~--------------~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg 176 (753)
T 3jro_A 111 EYGPLLLVASSDGKVSVVEFKENGTTSPIIID--------------AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176 (753)
T ss_dssp GGCSEEEEEETTSEEEEEECCSSSCCCCEEEE--------------CCSSCEEEEEECCCC---------CGGGCCEEEE
T ss_pred CCCCEEEEEeCCCcEEEEEeecCCCcceeEee--------------cCCCceEEEEecCcccccccccccCCCCCEEEEE
Confidence 999999999999999999887543322211 3556899999999 58999999
Q ss_pred ecCCeEEEEECCCC----eeeEEeeccCCCeEEEEEeCCC---CCEEEEeeCCCeEEEEecccCCCC-CceeeeecCCCC
Q 013436 246 SSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLE 317 (443)
Q Consensus 246 ~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~ 317 (443)
+.||.|++||++++ .....+.+|...|++++|+ ++ +.+|++|+.||.|++||++..... .........|..
T Consensus 177 s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 255 (753)
T 3jro_A 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255 (753)
T ss_dssp ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC-CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSS
T ss_pred ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec-cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCC
Confidence 99999999999877 5566778999999999998 55 899999999999999999843110 113334456889
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 318 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
.|++++|+|++++|++++.||.|++||++...
T Consensus 256 ~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99999999999999999999999999998643
No 118
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.1e-28 Score=224.03 Aligned_cols=256 Identities=13% Similarity=0.053 Sum_probs=203.6
Q ss_pred cccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC
Q 013436 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (443)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 182 (443)
+....++.....+....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+.... +...|.+++|+|+++
T Consensus 53 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~ 128 (369)
T 3zwl_B 53 DSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK----SPVPVKRVEFSPCGN 128 (369)
T ss_dssp SSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSS
T ss_pred CCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee----cCCCeEEEEEccCCC
Confidence 3445566666667777889999999999999999999999999999999999987666533 566799999999999
Q ss_pred eEEEEECC-----CeEEEEECCCCceeccccceecccCceeeccCCCCcee--cEEEEEEeCCCCEEEEEecCCeEEEEE
Q 013436 183 HLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF--GIFSLKFSTDGRELVAGSSDDCIYVYD 255 (443)
Q Consensus 183 ~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~~~~~dg~i~iwd 255 (443)
+|++++.+ +.|++||+...................+ ..|.. .+.+++|+|++++|++++.||.|++||
T Consensus 129 ~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 203 (369)
T 3zwl_B 129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-----ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYD 203 (369)
T ss_dssp EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-----ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-----cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 99999999 9999999987654322221111000000 01222 799999999999999999999999999
Q ss_pred CCC-CeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEE
Q 013436 256 LEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 256 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 334 (443)
+++ .+.+..+..|...|.+++|+ +++++|++++.|+.|++||++ .++.+..+. +...+..++|+|++++++++
T Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 277 (369)
T 3zwl_B 204 VSNNYEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVS----TLQVLKKYE-TDCPLNTAVITPLKEFIILG 277 (369)
T ss_dssp TTTTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT----TCCEEEEEE-CSSCEEEEEECSSSSEEEEE
T ss_pred CCCCcEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECC----CCceeeeec-CCCCceeEEecCCCceEEEe
Confidence 998 78888899999999999998 789999999999999999998 777777776 77899999999999999999
Q ss_pred eCCC--------------CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcc
Q 013436 335 GKDQ--------------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (443)
Q Consensus 335 ~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (443)
+.++ .+++||+.+.+...... .+...+..+.+.+++..+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l 330 (369)
T 3zwl_B 278 GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ----GHFGPLNTVAISPQGTSY 330 (369)
T ss_dssp ECCC-------------CEEEEEETTTCCEEEEEE----CCSSCEEEEEECTTSSEE
T ss_pred ecCCCceEEEEecCCCcceeEEEecCCCcchhhee----cccCcEEEEEECCCCCEE
Confidence 9988 89999998866544321 223334445555554433
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.3e-27 Score=225.03 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=195.0
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CCCeEEEEE
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVD 197 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd 197 (443)
.+.+|...|.+++|+|+++++++++.|+.|++||+.++..+... ..|...+.+++|+|+++.+++++ .++.|++||
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d 240 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV---DLTGKWSKILLYDPIRDLVYCSNWISEDISVID 240 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE---ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE---cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence 45689999999999999999999999999999999988666543 35666799999999999886555 799999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe--------cCCeEEEEECCCCeeeEEeeccC
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--------SDDCIYVYDLEANKLSLRILAHT 269 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~ 269 (443)
+.+++....... ...+.+++|+|+++.+++++ .||.|++||+.+++.+..+ .+.
T Consensus 241 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~ 302 (433)
T 3bws_A 241 RKTKLEIRKTDK-----------------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPP 302 (433)
T ss_dssp TTTTEEEEECCC-----------------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEE
T ss_pred CCCCcEEEEecC-----------------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCC
Confidence 998866443321 12589999999999999988 4889999999999876665 556
Q ss_pred CCeEEEEEeCCCCC-EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC------------
Q 013436 270 SDVNTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK------------ 336 (443)
Q Consensus 270 ~~v~~i~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------------ 336 (443)
..+.+++|+ ++++ ++++++.|+.|++||+. .++.+..+. +...+.+++|+|++++|++++.
T Consensus 303 ~~~~~~~~~-~~g~~l~~~~~~~~~v~v~d~~----~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 376 (433)
T 3bws_A 303 GNKRHIVSG-NTENKIYVSDMCCSKIEVYDLK----EKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK 376 (433)
T ss_dssp ECEEEEEEC-SSTTEEEEEETTTTEEEEEETT----TTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred CCcceEEEC-CCCCEEEEEecCCCEEEEEECC----CCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence 689999998 5564 66777899999999998 677776665 6778999999999999888876
Q ss_pred ---CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEE
Q 013436 337 ---DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 413 (443)
Q Consensus 337 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 413 (443)
||.|++||+.+ .+.+..+..+.. + .++.|+|+|++|
T Consensus 377 g~~dg~v~~~d~~~----------------------------------~~~~~~~~~~~~---~----~~~~~s~dg~~l 415 (433)
T 3bws_A 377 GLVLGKVYVIDTTT----------------------------------DTVKEFWEAGNQ---P----TGLDVSPDNRYL 415 (433)
T ss_dssp CSSCCEEEEEETTT----------------------------------TEEEEEEECSSS---E----EEEEECTTSCEE
T ss_pred cccceEEEEEECCC----------------------------------CcEEEEecCCCC---C----ceEEEcCCCCEE
Confidence 57999999987 455556655432 2 233466799999
Q ss_pred EEeeC-CCeEEEEEcc
Q 013436 414 YTGSH-DSCVYVYDLV 428 (443)
Q Consensus 414 ~tg~~-dg~v~iwd~~ 428 (443)
++++. |+.|++|++.
T Consensus 416 ~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 416 VISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEETTTTEEEEEEET
T ss_pred EEEECCCCeEEEEEec
Confidence 88875 9999999986
No 120
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7e-28 Score=218.00 Aligned_cols=237 Identities=14% Similarity=0.086 Sum_probs=186.9
Q ss_pred cccceeecccccCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC
Q 013436 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (443)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 182 (443)
+....++..........+..|...|.+++|+|++++|++|+.|+.|++|++..............|...|.+++| +++
T Consensus 38 dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~ 115 (313)
T 3odt_A 38 DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG 115 (313)
T ss_dssp TSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT
T ss_pred CCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC
Confidence 344556666555566778899999999999999999999999999999998765322223345678889999999 678
Q ss_pred eEEEEECCCeEEEEECCCCceeccccc-eecccCceeec---------cC----------------CCCceecEEEEEEe
Q 013436 183 HLVYASMSPIVHIVDVGSGTMESLANV-TEIHDGLDFSA---------AD----------------DGGYSFGIFSLKFS 236 (443)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~---------~~----------------~~~~~~~i~~l~~~ 236 (443)
+|++++.|+.|++||. ++....... ......+.+.. .. ...|...|.+++|+
T Consensus 116 ~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~ 193 (313)
T 3odt_A 116 VVISGSWDKTAKVWKE--GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVV 193 (313)
T ss_dssp EEEEEETTSEEEEEET--TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEE
T ss_pred EEEEEeCCCCEEEEcC--CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEc
Confidence 9999999999999992 222111110 00000000000 00 01277789999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC
Q 013436 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (443)
Q Consensus 237 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 316 (443)
|++. +++++.||.|++||+++++.+..+..|...|++++|+ +++ .|++++.||.|++||++ .++.+..+..|.
T Consensus 194 ~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~ 266 (313)
T 3odt_A 194 DDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL-PNG-DIVSCGEDRTVRIWSKE----NGSLKQVITLPA 266 (313)
T ss_dssp ETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-TTS-CEEEEETTSEEEEECTT----TCCEEEEEECSS
T ss_pred CCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe-cCC-CEEEEecCCEEEEEECC----CCceeEEEeccC
Confidence 9998 9999999999999999999999999999999999998 666 58899999999999998 888999999999
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
..|.+++|+|+++ +++++.||.|++||+++.+..
T Consensus 267 ~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 267 ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred ceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 9999999999998 667899999999999985543
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.5e-28 Score=217.12 Aligned_cols=198 Identities=13% Similarity=0.092 Sum_probs=143.6
Q ss_pred CceEEEEECCC----CCEEEEEEC--------------------CCeEEEEECCC-CeEEEEeeecCCccceEEEEEECC
Q 013436 125 SRAYVSQFSAD----GSLFVAGFQ--------------------ASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP 179 (443)
Q Consensus 125 ~~v~~~~~s~~----~~~l~~g~~--------------------d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~ 179 (443)
..|..++|+|| ++++++++. |+.|++|++.. ++.+.. ...|...++.++|+|
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s---~~~~~~~v~~l~fs~ 188 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN---QFLMPPEETILTFAE 188 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEE---EEECCCSSCEEEEEE
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeee---eccCCCceeeEEeec
Confidence 46788888888 888887664 56666666633 433322 224444566666666
Q ss_pred ---CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEE------------EE
Q 013436 180 ---DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL------------VA 244 (443)
Q Consensus 180 ---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l------------~~ 244 (443)
++.+|++++.|++|+|||+.+++....+.... .+...+.+++|+|+|.++ ++
T Consensus 189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~-------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS 255 (356)
T 2w18_A 189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD-------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESL 255 (356)
T ss_dssp EETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----------------CCCEEEEEEETTEEEEEEC----------
T ss_pred cCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC-------------cceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence 56789999999999999999998766543110 122368888999999876 56
Q ss_pred EecCCeEEEEECCCCeeeEEe-----eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCe
Q 013436 245 GSSDDCIYVYDLEANKLSLRI-----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (443)
Q Consensus 245 ~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v 319 (443)
|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++++.|++|+|||+. +++++.++.+|...+
T Consensus 256 Gs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~----tGk~l~tL~gH~~~v 328 (356)
T 2w18_A 256 RSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLL----LGQCTALLPPVSDQH 328 (356)
T ss_dssp --CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETT----TCSEEEEECCC--CC
T ss_pred cCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECC----CCcEEEEecCCCCCe
Confidence 788999999999999887665 2565555444443 7789999999999999998 899999999998765
Q ss_pred E-EEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 320 T-FIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 320 ~-~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
. .++|+|||++|++|+.|++|+|||+
T Consensus 329 vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 5 5899999999999999999999996
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=3.2e-28 Score=227.68 Aligned_cols=222 Identities=12% Similarity=0.075 Sum_probs=155.6
Q ss_pred ccccCCCCceEEEEECC--------CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCC-eEEEEE
Q 013436 118 WPVDQTTSRAYVSQFSA--------DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYAS 188 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~--------~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~ 188 (443)
..+.+|.+.|++++|+| |+++||+|+.|++|+|||+.++..+.. ...|..+|.+++|+|++. +|++++
T Consensus 130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~---~~~~~~~v~~v~~~p~~~~~l~~~~ 206 (393)
T 4gq1_A 130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA---GYPLSSPGISVQFRPSNPNQLIVGE 206 (393)
T ss_dssp CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE---EEECSSCEEEEEEETTEEEEEEEEE
T ss_pred cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee---ecCCCCCcEEEEECCCCCceEEecC
Confidence 45789999999999998 889999999999999999988765543 345667899999999874 799999
Q ss_pred CCCeEEEEECCCCceecccccee-cccCc--------eeeccCCCCceecEEEEEEe-CCCCEEEEEecCCeEEEEECCC
Q 013436 189 MSPIVHIVDVGSGTMESLANVTE-IHDGL--------DFSAADDGGYSFGIFSLKFS-TDGRELVAGSSDDCIYVYDLEA 258 (443)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~i~~l~~~-~~~~~l~~~~~dg~i~iwd~~~ 258 (443)
.|+.|++||+.+++......... ..... ........+|...+.++.|+ |+++.|++++.|+.+++||+..
T Consensus 207 ~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~ 286 (393)
T 4gq1_A 207 RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA 286 (393)
T ss_dssp TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--
T ss_pred CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc
Confidence 99999999999876533221110 00000 00111224677789999997 7999999999999999999988
Q ss_pred CeeeEEeeccCCCeEEE------------------EEeCC-CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCe
Q 013436 259 NKLSLRILAHTSDVNTV------------------CFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (443)
Q Consensus 259 ~~~~~~~~~~~~~v~~i------------------~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v 319 (443)
++....+..|...+..+ .++|+ ++.++++|+.||.|++||+. .+.....+.+|..+|
T Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~----~~~~~~~~~~~~~~V 362 (393)
T 4gq1_A 287 NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY----EKDSNSIPIQLGMPI 362 (393)
T ss_dssp -----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT----CTTCCEEEEECSSCE
T ss_pred CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC----CCcEEEEecCCCCcE
Confidence 77666555444433332 33333 34467778899999999998 777888888899999
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 320 TFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.+++|+|||++||+++.+| +.+|.+..
T Consensus 363 ~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 363 VDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp EEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred EEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 9999999999999998766 77776543
No 123
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=5.7e-27 Score=216.85 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=181.4
Q ss_pred cceeecccc-cCCC-ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEE--CCC
Q 013436 105 CHMLSRYLP-VNGP-WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPD 180 (443)
Q Consensus 105 ~~~~~~~~~-~~~~-~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~--s~~ 180 (443)
...++.... .... ..+.+|...|.+++|+|++++|++|+.||.|++||+.++..+. ...|...|.+++| +|+
T Consensus 65 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~ 140 (368)
T 3mmy_A 65 DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPN 140 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSS
T ss_pred cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCC
Confidence 344555543 2222 5678899999999999999999999999999999999986554 3457788999999 999
Q ss_pred CCeEEEEECCCeEEEEECCCCceeccccceecccC-------------------------ceeeccCCCCceecEEEEEE
Q 013436 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG-------------------------LDFSAADDGGYSFGIFSLKF 235 (443)
Q Consensus 181 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~i~~l~~ 235 (443)
+.+|++++.||.|++||+.+++............. ..........+...+.++.+
T Consensus 141 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (368)
T 3mmy_A 141 YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAI 220 (368)
T ss_dssp CEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEE
T ss_pred CCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEE
Confidence 99999999999999999998865443322110000 00000001112234555666
Q ss_pred eCCCCE----EEEEecCCeEEEEECCCC---eeeEEeeccCC------------CeEEEEEeCCCCCEEEEeeCCCeEEE
Q 013436 236 STDGRE----LVAGSSDDCIYVYDLEAN---KLSLRILAHTS------------DVNTVCFGDESGHLIYSGSDDNLCKV 296 (443)
Q Consensus 236 ~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~------------~v~~i~~~~~~~~~l~~~~~d~~i~i 296 (443)
.++... +++++.||.|++||++.. ..+..+..|.. .|++++|+ +++++|++++.||.|++
T Consensus 221 ~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~s~~~dg~i~i 299 (368)
T 3mmy_A 221 FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH-PVHGTLATVGSDGRFSF 299 (368)
T ss_dssp EECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC-TTTCCEEEEETTSCEEE
T ss_pred cccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe-cCCCEEEEEccCCeEEE
Confidence 555544 999999999999999887 55677777766 79999998 78899999999999999
Q ss_pred EecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
||++ .++.+..+.+|...|++++|+|++++|++++.|+..+.|++..
T Consensus 300 wd~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 300 WDKD----ARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EETT----TTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EECC----CCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 9998 8889999999999999999999999999999998777666554
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.2e-26 Score=220.11 Aligned_cols=249 Identities=13% Similarity=0.095 Sum_probs=193.7
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEee--ecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 201 (443)
...+.+++|+|++.++++++.++.|++||+.+++...... ....|...|.+++|+|++.++++++.|+.|++||+.++
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 3456699999987888888888999999999986664322 23467788999999999999999999999999999887
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEE-ecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCC
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (443)
+...... .|...+.+++|+|+++.++++ +.++.|++||+++++.+..+.. ...+.+++|+ +
T Consensus 202 ~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~-~ 263 (433)
T 3bws_A 202 AYKATVD----------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLS-K 263 (433)
T ss_dssp CEEEEEE----------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEEC-T
T ss_pred eEEEEEc----------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEc-C
Confidence 6654332 133479999999999988554 4799999999999988877755 4558999997 7
Q ss_pred CCCEEEEee--------CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEE-EEEeCCCCEEEEeCCCCCCc
Q 013436 281 SGHLIYSGS--------DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 281 ~~~~l~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~ 351 (443)
+++++++++ .|+.|++||++ .++.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+
T Consensus 264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---- 334 (433)
T 3bws_A 264 DGKELYIAQFSASNQESGGGRLGIYSMD----KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---- 334 (433)
T ss_dssp TSSEEEEEEEESCTTCSCCEEEEEEETT----TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT----
T ss_pred CCCEEEEEECCCCccccCCCeEEEEECC----CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC----
Confidence 888888887 58899999998 66665554 456689999999999755 5668899999999987
Q ss_pred cccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC-------------
Q 013436 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------------- 418 (443)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~------------- 418 (443)
.+.+..+.... ... +.+|+|+|++|++++.
T Consensus 335 ------------------------------~~~~~~~~~~~---~~~----~~~~s~dg~~l~~~~~~~~~~~~~~~~~g 377 (433)
T 3bws_A 335 ------------------------------KKVQKSIPVFD---KPN----TIALSPDGKYLYVSCRGPNHPTEGYLKKG 377 (433)
T ss_dssp ------------------------------TEEEEEEECSS---SEE----EEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred ------------------------------CcEEEEecCCC---CCC----eEEEcCCCCEEEEEecCCCcccccccccc
Confidence 34444443221 122 3346668998888876
Q ss_pred --CCeEEEEEccChhhhhHh
Q 013436 419 --DSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 419 --dg~v~iwd~~~g~~~~~~ 436 (443)
||.|++||+.+++.+..+
T Consensus 378 ~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 378 LVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp SSCCEEEEEETTTTEEEEEE
T ss_pred ccceEEEEEECCCCcEEEEe
Confidence 579999999998876544
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=1.8e-26 Score=212.77 Aligned_cols=203 Identities=12% Similarity=0.158 Sum_probs=154.8
Q ss_pred cCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEE-E
Q 013436 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-V 243 (443)
Q Consensus 165 ~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~ 243 (443)
...|...|.+++|+||+++|++|+.++ +++|++.+++....... ..+..+++.++++.+ +
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 75 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM------------------RHLSKVRMLHRTNYVAF 75 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC------------------SCCCEEEECTTSSEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec------------------CCeEEEEEcCCCCEEEE
Confidence 467888999999999999999988775 78999887654322110 146678888888877 5
Q ss_pred EEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCC----------------CC------------------CEEEE--
Q 013436 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE----------------SG------------------HLIYS-- 287 (443)
Q Consensus 244 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~----------------~~------------------~~l~~-- 287 (443)
+++.|+.|++||+.+++++..+. +...|.++++++. .+ .++++
T Consensus 76 ~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~s 154 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSN 154 (355)
T ss_dssp ECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEE
T ss_pred EECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeC
Confidence 67788999999999999888875 6678888888632 11 23444
Q ss_pred eeCCCeEEEEecccCCCCCc---------------e-eeeecCCCCCeEEEEECCCCCEEEEEeCCCC-EEEEeCCCCCC
Q 013436 288 GSDDNLCKVWDRRCLNVKGK---------------P-AGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSS 350 (443)
Q Consensus 288 ~~~d~~i~iwd~~~~~~~~~---------------~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~ 350 (443)
|+.||.|++||++ .+. + +..+.+|...|++++|+|++++|++++.|++ |++||+++
T Consensus 155 g~~~g~v~iwd~~----~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~--- 227 (355)
T 3vu4_A 155 EFNLGQIHITKLQ----SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED--- 227 (355)
T ss_dssp SSCTTCEEEEECC----C------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT---
T ss_pred CCcCcEEEEEECC----CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC---
Confidence 5788888888887 322 2 6788999999999999999999999999999 99999998
Q ss_pred ccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEe-c-cceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-G-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
++.+..+. + |... +.. .+|+|++++|++|+.||.|++||+.
T Consensus 228 -------------------------------~~~~~~~~~g~h~~~--v~~----~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 228 -------------------------------GVLVREFRRGLDRAD--VVD----MKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp -------------------------------CCEEEEEECTTCCSC--EEE----EEECTTSCEEEEEETTCEEEEEESS
T ss_pred -------------------------------CcEEEEEEcCCCCCc--EEE----EEECCCCCEEEEEECCCEEEEEEcc
Confidence 56677777 5 6633 223 3466699999999999999999997
Q ss_pred Chh
Q 013436 429 SIQ 431 (443)
Q Consensus 429 ~g~ 431 (443)
.+.
T Consensus 271 ~~~ 273 (355)
T 3vu4_A 271 NDQ 273 (355)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.8e-25 Score=208.93 Aligned_cols=231 Identities=14% Similarity=0.115 Sum_probs=179.9
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE-EEEECCCeEEEEECCCCceeccccceecccC
Q 013436 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (443)
Q Consensus 137 ~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (443)
.++++++.|+.|++||+.+++.+... ..|. .+.+++|+|++++| ++++.|+.|++||+.+++.......
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~---~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~------ 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATI---PVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------ 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE---ECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEe---ecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC------
Confidence 46788889999999999998666543 2333 48999999999977 5666899999999998876544321
Q ss_pred ceeeccCCCCceecEEEEEEeCCCCEEEEE-ecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEE-EEeeCCCe
Q 013436 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI-YSGSDDNL 293 (443)
Q Consensus 216 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~~~~~d~~ 293 (443)
...+.+++|+|++++|+++ +.++.|++||+.+++.+..+.. ...+.+++|+ ++++.+ ++++.|+.
T Consensus 73 -----------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 73 -----------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALS-PDGKKLYVTNNGDKT 139 (391)
T ss_dssp -----------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEEC-TTSSEEEEEETTTTE
T ss_pred -----------CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEEC-CCCCEEEEEeCCCCE
Confidence 1179999999999987654 4679999999999998877754 4578999998 677765 78888999
Q ss_pred EEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEE-EEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCC
Q 013436 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (443)
Q Consensus 294 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (443)
|++||++ .++.+..+..+ ..+..++|+|++++| ++++.++.|++||+++
T Consensus 140 v~~~d~~----~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~------------------------- 189 (391)
T 1l0q_A 140 VSVINTV----TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT------------------------- 189 (391)
T ss_dssp EEEEETT----TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-------------------------
T ss_pred EEEEECC----CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC-------------------------
Confidence 9999998 77777777655 567999999999987 5777889999999988
Q ss_pred CCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee---CCCeEEEEEccChhhhhHh
Q 013436 373 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~---~dg~v~iwd~~~g~~~~~~ 436 (443)
.+.+..+..+. .. ....|+|++++|++++ .++.|++||+.+++.+..+
T Consensus 190 ---------~~~~~~~~~~~---~~----~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 190 ---------NSVIDTVKVEA---AP----SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp ---------TEEEEEEECSS---EE----EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred ---------CeEEEEEecCC---Cc----cceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence 34444444332 12 2234667899999888 6899999999988765543
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.8e-24 Score=209.59 Aligned_cols=284 Identities=14% Similarity=0.164 Sum_probs=198.5
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEEC--CCCeEEEEeeecCCccceEEEEEECC----CCCeEEEE
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSP----DQRHLVYA 187 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~i~~s~----~~~~l~~~ 187 (443)
.+....+..+.. +.+++|+|||++|++++.|+.|.+||+ .+++.+.... +...+..++|+| |+++|+++
T Consensus 169 ~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~----~g~~p~~va~sp~~~~dg~~l~v~ 243 (543)
T 1nir_A 169 KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK----IGIEARSVESSKFKGYEDRYTIAG 243 (543)
T ss_dssp CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----CCSEEEEEEECCSTTCTTTEEEEE
T ss_pred ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----cCCCcceEEeCCCcCCCCCEEEEE
Confidence 333445552222 899999999999999999999999999 7776655432 233589999999 99999998
Q ss_pred EC-CCeEEEEECCCCceeccccceec-------c-----cCceeeccC--------CC-------------------Cce
Q 013436 188 SM-SPIVHIVDVGSGTMESLANVTEI-------H-----DGLDFSAAD--------DG-------------------GYS 227 (443)
Q Consensus 188 ~~-dg~i~iwd~~~~~~~~~~~~~~~-------~-----~~~~~~~~~--------~~-------------------~~~ 227 (443)
+. +++|.+||..+++.......... + ..+.+.... .. .+.
T Consensus 244 ~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~ 323 (543)
T 1nir_A 244 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA 323 (543)
T ss_dssp EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC
T ss_pred EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC
Confidence 84 89999999998876554432110 0 000010000 00 011
Q ss_pred ecEEEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEeec----cCCCeEEEEEeCCCCCEEEEee-CCCeEEEEeccc
Q 013436 228 FGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILA----HTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRC 301 (443)
Q Consensus 228 ~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~ 301 (443)
..+.++.|+|+|++|++++ .++.|.+||+.+++++..+.. |.+....+ ++|..+.+++++. .|++|.+||...
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 2345689999999877655 588999999999998888764 55444443 3445577777775 689999999983
Q ss_pred CC---CCCceeeeecCCCCCeEEEEECCCCCEEEEEe-------CCCCEEEEeCCCCCCccccCCcccccCcccccccCC
Q 013436 302 LN---VKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 371 (443)
Q Consensus 302 ~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (443)
.. ...+++..+.+|...+..++++|++++|++++ .+++|.|||+.+.+......
T Consensus 403 ~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~---------------- 466 (543)
T 1nir_A 403 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL---------------- 466 (543)
T ss_dssp TTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE----------------
T ss_pred CCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEe----------------
Confidence 11 01788999999988999999999999999987 26799999999855321100
Q ss_pred CCCCcccCCCCeeEEE---EeccceeeeeeEEEecCCccCCccEEEEee-----CCCeEEEEEccChhhhhHhH
Q 013436 372 PQARDLKHPCDQSVAT---YKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-----HDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 372 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~-----~dg~v~iwd~~~g~~~~~~~ 437 (443)
.+.. +..+. ...+++.|+|+|+.|+++. .|+.|.|||..+++++.+++
T Consensus 467 ------------~v~~~~~~~~~~------~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 467 ------------PIAEWADLGEGA------KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ------------CHHHHHCCCSSC------CEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ------------echhhcccCCCC------CceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 0000 01111 2235566888999988763 47999999999999887765
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.8e-24 Score=203.46 Aligned_cols=243 Identities=15% Similarity=0.136 Sum_probs=181.5
Q ss_pred cccCCCCceEEEEECC--------------CCCEEEEEECC------CeEEEEECCCCeEEEEeeecCCccceEEEEEEC
Q 013436 119 PVDQTTSRAYVSQFSA--------------DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~--------------~~~~l~~g~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s 178 (443)
.+.+|...+..+++++ .+..++.++.+ +.|++||++.+. .. ....|...|.+++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~S 187 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWS 187 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEEC
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEc
Confidence 4677777777777765 25666666654 799999998642 22 233566789999999
Q ss_pred CCCCeEEEEECCC---eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEE-EEecCC--eEE
Q 013436 179 PDQRHLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDD--CIY 252 (443)
Q Consensus 179 ~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~dg--~i~ 252 (443)
||++.|++++.++ .|++||+.+++...... |...+.+++|+|||+.|+ +++.++ .|+
T Consensus 188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~-----------------~~~~~~~~~~spdg~~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 188 PDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-----------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLY 250 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-----------------CSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCcEEEeec-----------------CCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence 9999999999885 99999999887643221 333789999999999888 565555 499
Q ss_pred EEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeC-CC--eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCC
Q 013436 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (443)
Q Consensus 253 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 329 (443)
+||+.+++. ..+..|...+.+++|+ ++++.|++++. ++ .|.+||+. .++ ...+..+...+.+++|+|+|+
T Consensus 251 ~~d~~~~~~-~~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~spdG~ 323 (415)
T 2hqs_A 251 VMDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNIN----GGA-PQRITWEGSQNQDADVSSDGK 323 (415)
T ss_dssp EEETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----SSC-CEECCCSSSEEEEEEECTTSS
T ss_pred EEECCCCCE-EeCcCCCCcccceEEC-CCCCEEEEEECCCCCcEEEEEECC----CCC-EEEEecCCCcccCeEECCCCC
Confidence 999998875 5677888899999998 78888887775 45 67777886 443 344556777889999999999
Q ss_pred EEEEEeCC---CCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCc
Q 013436 330 YLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (443)
Q Consensus 330 ~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (443)
+|++++.+ ..|++||+.+.+ ...+..+. . ..++.|
T Consensus 324 ~l~~~~~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~---~----~~~~~~ 361 (415)
T 2hqs_A 324 FMVMVSSNGGQQHIAKQDLATGG-----------------------------------VQVLSSTF---L----DETPSL 361 (415)
T ss_dssp EEEEEEECSSCEEEEEEETTTCC-----------------------------------EEECCCSS---S----CEEEEE
T ss_pred EEEEEECcCCceEEEEEECCCCC-----------------------------------EEEecCCC---C----cCCeEE
Confidence 99988764 589999998732 22333332 1 234457
Q ss_pred cCCccEEEEeeCCC---eEEEEEccChh
Q 013436 407 STGQKYIYTGSHDS---CVYVYDLVSIQ 431 (443)
Q Consensus 407 s~d~~~l~tg~~dg---~v~iwd~~~g~ 431 (443)
+|||++|++++.|+ .|++||+..+.
T Consensus 362 spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 362 APNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred cCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 77999999998877 89999987443
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=5.6e-23 Score=193.21 Aligned_cols=205 Identities=17% Similarity=0.144 Sum_probs=163.5
Q ss_pred cCCCccccCCCCceEEEEECCCCCEEEEEECCC---eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE-EEEC
Q 013436 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASM 189 (443)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-~~~~ 189 (443)
......+.+|...|.+++|+|||++|++++.++ .|++||+.+++... ...+...+.+++|+||++.|+ +++.
T Consensus 168 g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~----l~~~~~~~~~~~~spdg~~la~~~~~ 243 (415)
T 2hqs_A 168 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSPDGSKLAFALSK 243 (415)
T ss_dssp SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECTTSSEEEEEECT
T ss_pred CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE----eecCCCcccCEEEcCCCCEEEEEEec
Confidence 455677888999999999999999999999875 99999999886542 234556799999999999888 5555
Q ss_pred CC--eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-C--eEEEEECCCCeeeEE
Q 013436 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLR 264 (443)
Q Consensus 190 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~ 264 (443)
++ .|++||+.+++...... |...+.+++|+|||+.|++++.+ + .|++||+.+++. ..
T Consensus 244 ~g~~~i~~~d~~~~~~~~l~~-----------------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~ 305 (415)
T 2hqs_A 244 TGSLNLYVMDLASGQIRQVTD-----------------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QR 305 (415)
T ss_dssp TSSCEEEEEETTTCCEEECCC-----------------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EE
T ss_pred CCCceEEEEECCCCCEEeCcC-----------------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EE
Confidence 55 59999998876543221 33478999999999999988864 4 788889988764 45
Q ss_pred eeccCCCeEEEEEeCCCCCEEEEeeCC---CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC---
Q 013436 265 ILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--- 338 (443)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--- 338 (443)
+..+...+.+++|+ +++++|++++.+ ..|.+||+. .++. ..+..+. .+.+++|+|+|++|++++.++
T Consensus 306 l~~~~~~~~~~~~s-pdG~~l~~~~~~~g~~~i~~~d~~----~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~ 378 (415)
T 2hqs_A 306 ITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLA----TGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGS 378 (415)
T ss_dssp CCCSSSEEEEEEEC-TTSSEEEEEEECSSCEEEEEEETT----TCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEE
T ss_pred EecCCCcccCeEEC-CCCCEEEEEECcCCceEEEEEECC----CCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCcc
Confidence 55677789999998 888888887764 589999997 5554 3455554 899999999999999888876
Q ss_pred CEEEEeCCC
Q 013436 339 AIKLWDIRK 347 (443)
Q Consensus 339 ~i~iwd~~~ 347 (443)
.|++||+..
T Consensus 379 ~l~~~d~~g 387 (415)
T 2hqs_A 379 VLNLVSTDG 387 (415)
T ss_dssp EEEEEETTS
T ss_pred EEEEEECCC
Confidence 799999875
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=4.1e-23 Score=184.72 Aligned_cols=241 Identities=15% Similarity=0.159 Sum_probs=174.5
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCC-CeEEEEeeecCCccceEEEEEECCCCCeEEEEEC--CC--
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SP-- 191 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~--dg-- 191 (443)
...+..|...|.+++|+|+|++|++++ ++.|++||+.+ +..... ....+...+.+++|+|++++|++++. ++
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV--DTGFATICNNDHGISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC--CCTTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe--ccccccccccceEECCCCCEEEEEEeCCCCcc
Confidence 345567889999999999999999986 78999999998 754332 11222356889999999999999983 34
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEE-EEecCCeEEEEECCC-CeeeEEeeccC
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEA-NKLSLRILAHT 269 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~~~ 269 (443)
.|.++++.++....... ...+..++|+|+++.|+ +++.++.+.+|++.. ......+..+.
T Consensus 111 ~l~~~~~~~~~~~~~~~------------------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 111 AIYLLPSTGGTPRLMTK------------------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp EEEEEETTCCCCEECCS------------------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred eEEEEECCCCceEEeec------------------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 45555555544322111 11478899999999877 777899889988532 23345666788
Q ss_pred CCeEEEEEeCCCCCEEEEee-CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-----------
Q 013436 270 SDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----------- 337 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----------- 337 (443)
..+.+++|+ ++++.|++++ .++.+.+|++.. ....+..+..|...+..++|+|++++|++++.+
T Consensus 173 ~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 173 GRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRV---DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEET---TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred CccccceEC-CCCCEEEEEecCCCCccEEEECC---CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 899999998 7777776655 589999999862 345566777788889999999999999988765
Q ss_pred CCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee
Q 013436 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (443)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~ 417 (443)
+.|++||+.+.+. ..+..+.+|... ...+.|+|++++|++++
T Consensus 249 ~~l~~~d~~~~~~--------------------------------~~~~~~~~~~~~------~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 249 VRVQLMDMDGGNV--------------------------------ETLFDLFGGQGT------MNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp EEEEEEETTSCSC--------------------------------EEEEEEEESTTT------SCSCCBCTTSSEEEEEE
T ss_pred eEEEEEecCCCCc--------------------------------eeeeccCCCCcc------cccceECCCCCEEEEEE
Confidence 5699999987331 223344444421 24567889999999887
Q ss_pred CCC
Q 013436 418 HDS 420 (443)
Q Consensus 418 ~dg 420 (443)
.|.
T Consensus 291 ~~~ 293 (297)
T 2ojh_A 291 YFP 293 (297)
T ss_dssp ECC
T ss_pred ecc
Confidence 764
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2.3e-22 Score=185.00 Aligned_cols=255 Identities=12% Similarity=0.069 Sum_probs=188.7
Q ss_pred CCceEEEEECCCCCEEEEEEC-------CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE-ECCCeEEE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQ-------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHI 195 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~i 195 (443)
...+..++|+|+++++++++. ++.|.+||..+++.+...... ..+..++|+|++++++++ ..++.|.+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND----LKPFGATINNTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES----SCCCSEEEETTTTEEEEEETTTTEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC----CCcceEEECCCCCEEEEEecCCCEEEE
Confidence 456889999999999888874 568999999998766654332 236779999999966655 45789999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe--cCCeEEEEECCCCeeeEEeeccCCCeE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVN 273 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~ 273 (443)
||..+++............ ........+.+++|+|+++.+++++ .++.|.+||+.+++.+..+..+...+.
T Consensus 116 ~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 188 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKR-------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST 188 (353)
T ss_dssp EETTTCCEEEEEESCCCCC-------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC
T ss_pred EeCCCCeeEEEEecCCCcc-------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc
Confidence 9999887654433221100 0000111378899999999887776 478899999999998888875666788
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC----CCCCeEEEEECCCCCEEEEEeC-CCCEEEEeCCCC
Q 013436 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKM 348 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~ 348 (443)
+++|+ ++++.+++++.++.|.+||.. +++.+..+.. +...+..++|+|+++++++++. ++.|.+||+.+.
T Consensus 189 ~~~~s-~dg~~l~~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 189 GLALD-SEGKRLYTTNADGELITIDTA----DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp CCEEE-TTTTEEEEECTTSEEEEEETT----TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred eEEEC-CCCCEEEEEcCCCeEEEEECC----CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 99998 888889999999999999998 6777666553 5557888999999997776665 589999999873
Q ss_pred CCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee-CCCeEEEEEc
Q 013436 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDL 427 (443)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~-~dg~v~iwd~ 427 (443)
+.+..+..... ....|+|+|+++++++ .++.|.+||+
T Consensus 264 ----------------------------------~~~~~~~~~~~--------~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 264 ----------------------------------NILAKVAAPES--------LAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp ----------------------------------CEEEEEECSSC--------CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ----------------------------------cEEEEEEcCCC--------ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 33444443321 1234666898666555 6999999999
Q ss_pred cChhhhhHh
Q 013436 428 VSIQILFCR 436 (443)
Q Consensus 428 ~~g~~~~~~ 436 (443)
.+++.+..+
T Consensus 302 ~~~~~~~~~ 310 (353)
T 3vgz_A 302 KSYKVVKTF 310 (353)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 998876544
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.1e-22 Score=197.04 Aligned_cols=232 Identities=13% Similarity=0.091 Sum_probs=176.8
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEEC--CCCceecccc
Q 013436 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV--GSGTMESLAN 208 (443)
Q Consensus 131 ~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~ 208 (443)
+|+|++.++++++.|++|.+||..+++.+..... ++. +..++|+||+++|++++.|+.|.+||+ .+++......
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~--g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC--STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec--Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 4889999999999999999999999977665332 222 889999999999999999999999999 6665433222
Q ss_pred ceecccCceeeccCCCCceecEEEEEEeC----CCCEEEEEec-CCeEEEEECCCCeeeEEeec----------cC-CCe
Q 013436 209 VTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSS-DDCIYVYDLEANKLSLRILA----------HT-SDV 272 (443)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~----------~~-~~v 272 (443)
. ...+..++|+| +|+++++++. ++.|.+||..+++++..+.. |. ..+
T Consensus 220 ~-----------------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v 282 (543)
T 1nir_A 220 I-----------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 282 (543)
T ss_dssp C-----------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred c-----------------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence 1 11578999999 9999999885 89999999999998888764 22 268
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceee--eecCCCCCeEEEEECCCCCEEEEEe-CCCCEEEEeCCCCC
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG--VLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMS 349 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 349 (443)
.++.+++..+.++++...++.|.+||.. ..+.+. .+ .+...+..++|+|+|++|++++ .+++|.+||+.+
T Consensus 283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~----~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-- 355 (543)
T 1nir_A 283 AAIIASHEHPEFIVNVKETGKVLLVNYK----DIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-- 355 (543)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEECT----TSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT--
T ss_pred EEEEECCCCCEEEEEECCCCeEEEEEec----CCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC--
Confidence 8999986667778888899999999997 333322 33 3556788899999999876554 589999999998
Q ss_pred CccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEec----cceeeeeeEEEecCCccCC-ccEEEEee-CCCeEE
Q 013436 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG----HSVLRTLIRCHFSPVYSTG-QKYIYTGS-HDSCVY 423 (443)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~d-~~~l~tg~-~dg~v~ 423 (443)
++.+..+.. |.... ..| ++|+ +.+++++. .|++|.
T Consensus 356 --------------------------------g~l~~~i~~g~~ph~g~g----~~~---~~p~~g~~~~s~~~~d~~V~ 396 (543)
T 1nir_A 356 --------------------------------RRLSALVDVGKTPHPGRG----ANF---VHPKYGPVWSTSHLGDGSIS 396 (543)
T ss_dssp --------------------------------TEEEEEEECSSSBCCTTC----EEE---EETTTEEEEEEEBSSSSEEE
T ss_pred --------------------------------CeEEEeeccCCCCCCCCC----ccc---CCCCCccEEEeccCCCceEE
Confidence 444555553 32111 111 2345 67777775 689999
Q ss_pred EEEccC
Q 013436 424 VYDLVS 429 (443)
Q Consensus 424 iwd~~~ 429 (443)
+||+.+
T Consensus 397 v~d~~~ 402 (543)
T 1nir_A 397 LIGTDP 402 (543)
T ss_dssp EEECCT
T ss_pred EEEeCC
Confidence 999988
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.9e-23 Score=210.35 Aligned_cols=243 Identities=13% Similarity=0.055 Sum_probs=178.4
Q ss_pred CCceEEEEECCCCCEEEEEEC-CC-----eEEEEECCCCeEEEEeeecCCcc----------------------ceEEEE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQ-AS-----QIRIYDVERGWKIQKDILAKSLR----------------------WTVTDT 175 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~-d~-----~i~iwd~~~~~~~~~~~~~~~~~----------------------~~v~~i 175 (443)
...+.+++|||||++|++++. |+ .|++||+.+++..... ....+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456999999999999999998 88 8999999998654432 222222 347889
Q ss_pred EECCCCCeEEEEECCCeEEEEECCCC---ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEE
Q 013436 176 SLSPDQRHLVYASMSPIVHIVDVGSG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (443)
Q Consensus 176 ~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 252 (443)
+|||||++|++++. +.|++||+.++ ...... .+...+..++|+|||++|++++ ++.|+
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-----------------~~~~~~~~~~~SPDG~~la~~~-~~~i~ 175 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-----------------HGEGFATDAKLSPKGGFVSFIR-GRNLW 175 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-----------------CSSSCEEEEEECTTSSEEEEEE-TTEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-----------------cCCcccccccCCCCCCEEEEEe-CCcEE
Confidence 99999999999887 99999999987 433222 1333789999999999999987 46899
Q ss_pred EEECCCCeeeEEeeccCCC----------------eEEEEEeCCCCCEEEEeeCCC------------------------
Q 013436 253 VYDLEANKLSLRILAHTSD----------------VNTVCFGDESGHLIYSGSDDN------------------------ 292 (443)
Q Consensus 253 iwd~~~~~~~~~~~~~~~~----------------v~~i~~~~~~~~~l~~~~~d~------------------------ 292 (443)
+||+.+++.......+... +.+++|+ +++++|++++.|+
T Consensus 176 ~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 176 VIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred EEecCCCCEEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 9999988765544333332 4789998 8888888887665
Q ss_pred ---------eEEEEecccCCCC-Cceeeeec--CCCCCeEEEEECCCCCEEEEEeC-----CCCEEEEeCCCCCCccccC
Q 013436 293 ---------LCKVWDRRCLNVK-GKPAGVLM--GHLEGITFIDSRGDGRYLISNGK-----DQAIKLWDIRKMSSNASCN 355 (443)
Q Consensus 293 ---------~i~iwd~~~~~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~ 355 (443)
.|.+||+. . ++...... .|...+..++| |||++|++++. +..|++||+.+.
T Consensus 255 ~~g~~~~~~~l~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g------- 322 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPA----EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN------- 322 (741)
T ss_dssp BTTSCCCEEEEEEECSS----TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-------
T ss_pred CCCCCCCeeEEEEEECC----CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-------
Confidence 78889987 4 44433332 47778999999 99999987654 567999999873
Q ss_pred CcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
+....+..+... .+....++.|+|||+++++++.||.++||.+.
T Consensus 323 ---------------------------~~~~~~~~~~~~--~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 323 ---------------------------QQRVLAHETSPT--WVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp ---------------------------CEEEEEEEECSS--CCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred ---------------------------ceEEEEEcCCCC--cCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 333334333210 00011345688899999999999988888765
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=7.2e-22 Score=180.77 Aligned_cols=256 Identities=14% Similarity=0.143 Sum_probs=169.8
Q ss_pred CCCCceEEEEECCCCCEEEEEECC-CeEEEEECC--CCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC-CCeEEEEE
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQA-SQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVD 197 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d-~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg~i~iwd 197 (443)
.|...+.+++|+|+|++|++++.+ +.|.+|++. ++..... .....+. .+..++|+|++++|++++. ++.|.+||
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-AESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-EEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec-cccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 466788999999999999988886 899999997 5532221 1121222 5889999999998877765 88999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe-cCCeEEEEECCC-CeeeE----Eeec-cCC
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA-NKLSL----RILA-HTS 270 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~----~~~~-~~~ 270 (443)
+..+.......... ....+.+++|+|+++++++++ .++.|++||+.+ ++... .+.. ...
T Consensus 113 ~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 113 LEDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp EETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred CCCCcccccccccc--------------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence 95332211111111 111477899999999888887 889999999987 54432 2222 345
Q ss_pred CeEEEEEeCCCCCEEEE-eeCCCeEEEEecccCCCCCceeeeec----CC--CCCeEEEEECCCCCEEEEE-eCCCCEEE
Q 013436 271 DVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLM----GH--LEGITFIDSRGDGRYLISN-GKDQAIKL 342 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~----~~--~~~v~~~~~~~~~~~l~s~-~~dg~i~i 342 (443)
.+..++|+ ++++++++ +..++.|.+||+.............. ++ ...+..++|+|++++|+++ ..++.|.+
T Consensus 179 ~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 179 GPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp CEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 78899998 77776554 45889999999963111111122222 11 2356789999999988744 47899999
Q ss_pred EeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee-CCCe
Q 013436 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSC 421 (443)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~-~dg~ 421 (443)
||+...... ...+..+..+.. .. ..+|+|+|++|++++ .++.
T Consensus 258 ~d~~~~~~~------------------------------~~~~~~~~~~~~---~~----~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 258 FSVSEDGSV------------------------------LSKEGFQPTETQ---PR----GFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp EEECTTSCC------------------------------EEEEEEEECSSS---CC----CEEECTTSSEEEEECTTTCE
T ss_pred EEEcCCCCc------------------------------eEEeeeecCCCc---cc----eEEECCCCCEEEEecCCCCe
Confidence 999731100 122333333321 22 234667899888887 6899
Q ss_pred EEEEEc--cChh
Q 013436 422 VYVYDL--VSIQ 431 (443)
Q Consensus 422 v~iwd~--~~g~ 431 (443)
|.+|++ .+|+
T Consensus 301 v~v~~~d~~~g~ 312 (343)
T 1ri6_A 301 ISVYEIVGEQGL 312 (343)
T ss_dssp EEEEEEETTTTE
T ss_pred EEEEEEcCCCce
Confidence 999955 4554
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=1.1e-21 Score=178.79 Aligned_cols=254 Identities=9% Similarity=0.066 Sum_probs=170.3
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEEC-CCeEEEEECCCCeE-EEEeeecCCccceEEEEEECCCCCeEEEEECCC---e
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---I 192 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~-d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg---~ 192 (443)
..+..+...+ +++|+|+|+++++++. ++.|.+||+.++.. ... ...+..+..+++|+|++++|+++..++ .
T Consensus 34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 109 (331)
T 3u4y_A 34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA---IQEGQSSMADVDITPDDQFAVTVTGLNHPFN 109 (331)
T ss_dssp EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE---EEECSSCCCCEEECTTSSEEEECCCSSSSCE
T ss_pred eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe---cccCCCCccceEECCCCCEEEEecCCCCccc
Confidence 3444455566 9999999997776665 88999999998865 332 222333444499999999999555553 8
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEE-ecCCe-EEEEECCCCeee----EEee
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDC-IYVYDLEANKLS----LRIL 266 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~----~~~~ 266 (443)
|.+||+.+++........ ....+++|+|+|++++++ ..++. |.+|++.....+ ....
T Consensus 110 i~v~d~~~~~~~~~~~~~-----------------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 172 (331)
T 3u4y_A 110 MQSYSFLKNKFISTIPIP-----------------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI 172 (331)
T ss_dssp EEEEETTTTEEEEEEECC-----------------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE
T ss_pred EEEEECCCCCeEEEEECC-----------------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc
Confidence 999999988765432211 146899999999866555 55577 999998764333 1222
Q ss_pred ccCCCeEEEEEeCCCCCEE-EEeeCCCeEEEEecccCCCCCce---eeeecCCCCCeEEEEECCCCCEEEEEe-CCCCEE
Q 013436 267 AHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKP---AGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIK 341 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~ 341 (443)
.....+..++|+ ++++++ +++..++.|.+||+. .++. +..+.. ...+..++|+|+|++|++++ .++.|.
T Consensus 173 ~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~----~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~ 246 (331)
T 3u4y_A 173 SGGTRPFNITFT-PDGNFAFVANLIGNSIGILETQ----NPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVF 246 (331)
T ss_dssp CSSSSEEEEEEC-TTSSEEEEEETTTTEEEEEECS----STTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEE
T ss_pred cCCCCccceEEC-CCCCEEEEEeCCCCeEEEEECC----CCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEE
Confidence 345568999998 777754 555578999999998 5555 666654 36678899999999776554 578899
Q ss_pred EEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccce--eeeeeEEEecCCccCCccEEEEeeC-
Q 013436 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV--LRTLIRCHFSPVYSTGQKYIYTGSH- 418 (443)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~d~~~l~tg~~- 418 (443)
+||+.+.+. ..+..+..+.. .... .......|+|||++|++++.
T Consensus 247 ~~d~~~~~~--------------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~ 293 (331)
T 3u4y_A 247 NFNQLSGTL--------------------------------SFVKSFGHGLLIDPRPL-FGANQMALNKTETKLFISANI 293 (331)
T ss_dssp EEETTTTEE--------------------------------EEEEEEECCCCCCCGGG-TTCCCEEECTTSSEEEEEETT
T ss_pred EEECCCCce--------------------------------eeecccccccccCCCCc-ccccceEECCCCCEEEEecCC
Confidence 999987331 11222222100 0000 00012357779998866554
Q ss_pred CCeEEEEEccChh
Q 013436 419 DSCVYVYDLVSIQ 431 (443)
Q Consensus 419 dg~v~iwd~~~g~ 431 (443)
++.|.+||+.+..
T Consensus 294 ~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 294 SRELKVFTISGKV 306 (331)
T ss_dssp TTEEEEEETTSCE
T ss_pred CCcEEEEEecCCc
Confidence 6799999997654
No 136
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=1.9e-21 Score=178.60 Aligned_cols=267 Identities=13% Similarity=0.132 Sum_probs=170.2
Q ss_pred CCCCceEEEEECCCCCEEEEEEC---CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CCCeEEEEE
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVD 197 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd 197 (443)
.+...+..++|+|||+ |++++. ++.|.+|++.++.. ........+...+..++|+|++++|++++ .++.|.+|+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 3456678899999999 555544 68999999987742 22222233445688899999999998888 678999999
Q ss_pred CCC-CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC-CCeeeE--Eeec-cCCCe
Q 013436 198 VGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSL--RILA-HTSDV 272 (443)
Q Consensus 198 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~--~~~~-~~~~v 272 (443)
+.. +.............+ +. .......+.+++|+|+|+++++...++.|.+||+. +++... .+.. ....+
T Consensus 115 ~~~~g~~~~~~~~~~~~~~----p~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p 189 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHG----PR-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP 189 (347)
T ss_dssp ECTTSCEEEEEEEECCCCC----SS-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred eCCCCCeeecceeecCCCC----CC-ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence 963 333222211110000 00 01122358899999999966666678899999998 454322 2222 23367
Q ss_pred EEEEEeCCCCCEEEE-eeCCCeEEEEecccCCCCCceeeeecCCC------CCeEEEEECCCCCEE-EEEeCCCCEEEEe
Q 013436 273 NTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLMGHL------EGITFIDSRGDGRYL-ISNGKDQAIKLWD 344 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l-~s~~~dg~i~iwd 344 (443)
..++|+ ++++++++ +..++.|.+|++.........+..+.... ..+..++|+|+|++| ++...++.|.+||
T Consensus 190 ~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 190 RHLVFS-PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred ceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 889998 77875555 56788999999873111111222332222 348889999999987 4556689999999
Q ss_pred CCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCC-CeEE
Q 013436 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SCVY 423 (443)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~d-g~v~ 423 (443)
+..... ...+..+..+.. ... ..+|+|||++|++++.+ +.|.
T Consensus 269 ~~~~g~-------------------------------~~~~~~~~~~~~--~~~----~~~~spdg~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 269 VTADGH-------------------------------LTLIQQISTEGD--FPR----DFDLDPTEAFVVVVNQNTDNAT 311 (347)
T ss_dssp ECGGGC-------------------------------EEEEEEEECSSS--CCC----EEEECTTSSEEEEEETTTTEEE
T ss_pred ECCCCc-------------------------------EEEeEEEecCCC--CcC----eEEECCCCCEEEEEEcCCCcEE
Confidence 873100 122334433321 112 23467799998888764 8999
Q ss_pred EE--EccChhhh
Q 013436 424 VY--DLVSIQIL 433 (443)
Q Consensus 424 iw--d~~~g~~~ 433 (443)
+| |..+|++.
T Consensus 312 v~~~d~~tg~l~ 323 (347)
T 3hfq_A 312 LYARDLTSGKLS 323 (347)
T ss_dssp EEEECTTTCCEE
T ss_pred EEEEeCCCCeEE
Confidence 99 55567654
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=5.1e-22 Score=177.56 Aligned_cols=226 Identities=15% Similarity=0.133 Sum_probs=164.4
Q ss_pred EECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC-CceeccccceecccCceeec
Q 013436 142 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSA 220 (443)
Q Consensus 142 g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 220 (443)
++.++.|++||+.+++... ...|...|.+++|+|++++|++++ ++.|++||+.+ ++........
T Consensus 18 ~~~~~~i~~~d~~~~~~~~----~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~---------- 82 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV----VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF---------- 82 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE----EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT----------
T ss_pred CCcceeEEEEeCCCCceee----eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc----------
Confidence 4568899999999885443 223566799999999999999976 78999999998 7654333211
Q ss_pred cCCCCceecEEEEEEeCCCCEEEEEecC----CeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEE-EeeCCCeEE
Q 013436 221 ADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLCK 295 (443)
Q Consensus 221 ~~~~~~~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-~~~~d~~i~ 295 (443)
+...+.+++|+|++++|++++.+ ..|.++++.+++ ...+.. ...+..++|+ ++++.|+ +++.++.+.
T Consensus 83 -----~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~s-pdg~~l~~~~~~~~~~~ 154 (297)
T 2ojh_A 83 -----ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWS-PDGKSFTYCGIRDQVFD 154 (297)
T ss_dssp -----CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEEC-TTSSEEEEEEEETTEEE
T ss_pred -----ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEEC-CCCCEEEEEECCCCceE
Confidence 12367889999999999999832 456666666655 344433 3458999998 6777665 788899999
Q ss_pred EEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe-CCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCC
Q 013436 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (443)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (443)
+|+++. .......+..+...+.+++|+|++++|+.++ .++.++||++...
T Consensus 155 l~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~-------------------------- 205 (297)
T 2ojh_A 155 IYSMDI---DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD-------------------------- 205 (297)
T ss_dssp EEEEET---TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------------------------
T ss_pred EEEEEC---CCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC--------------------------
Confidence 999752 2334456677888999999999999888766 5899999988631
Q ss_pred CcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCC-----------CeEEEEEccChhh
Q 013436 375 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----------SCVYVYDLVSIQI 432 (443)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~d-----------g~v~iwd~~~g~~ 432 (443)
...+..+..|.. ....+.|+|+|++|++++.+ +.|++||+.+++.
T Consensus 206 -------~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 206 -------GSSVERITDSAY------GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp -------SSCEEECCCCSE------EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred -------CCCcEEEecCCc------ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 122344444442 22344577799999988876 5799999998765
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=7.6e-23 Score=206.75 Aligned_cols=198 Identities=12% Similarity=0.078 Sum_probs=150.0
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccc---eEEEEEECCCCCeEEEEECC---------CeE
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMS---------PIV 193 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~i~~s~~~~~l~~~~~d---------g~i 193 (443)
.+.+++|+|||+++++ +.||+|++||+.+++.... ...+.. .|.+++|||||++|++++.+ +.|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~---~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVL---IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEE---ECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEE---eccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 4678899999997776 6899999999998855433 233332 48999999999999999864 788
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCe-
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV- 272 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v- 272 (443)
++||+.+++...+... .+|...+..++|||||+.|++++. +.|++||+.+++.......+...+
T Consensus 94 ~~~d~~~~~~~~l~~~--------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~ 158 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPP--------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI 158 (723)
T ss_dssp EEEESSSCCCEECCCT--------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTE
T ss_pred EEEECCCCceEeccCC--------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCce
Confidence 8999998875322211 123335778999999999999886 789999999987766555444333
Q ss_pred -----------------EEEEEeCCCCCEEEEeeCCC----------------------------------eEEEEeccc
Q 013436 273 -----------------NTVCFGDESGHLIYSGSDDN----------------------------------LCKVWDRRC 301 (443)
Q Consensus 273 -----------------~~i~~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~ 301 (443)
.+++|+ ++++.|++++.|+ .|++||+.
T Consensus 159 ~~g~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~- 236 (723)
T 1xfd_A 159 YNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN- 236 (723)
T ss_dssp EEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS-
T ss_pred ECcccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC-
Confidence 789998 8889888887543 79999997
Q ss_pred CCCCCceeeeecCC------CCCeEEEEECCCCCEEEEEeC----CCCEEEEeCCC
Q 013436 302 LNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK----DQAIKLWDIRK 347 (443)
Q Consensus 302 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~----dg~i~iwd~~~ 347 (443)
.++....+..+ ...+..++|+|||++|++.+. +..|++||+.+
T Consensus 237 ---~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 237 ---GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp ---SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred ---CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence 55544455443 567899999999998876643 35799999987
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=4e-21 Score=175.39 Aligned_cols=267 Identities=13% Similarity=0.074 Sum_probs=161.6
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeeecCCccc-eEEEEEECCCCCeEEE-EECCCeEEEEECCCCceeccccceeccc
Q 013436 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-TVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHD 214 (443)
Q Consensus 137 ~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (443)
++|++++.++.|.+||+.+++.+...... +.. .+..++|+|+++.+++ +..++.|.+||+.+++..........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP-- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc--
Confidence 47899999999999999998666543322 111 3678999999987655 45678999999998876543322110
Q ss_pred CceeeccCCCCceecEEEEEEeCCCCEEEEEe------------cCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCC
Q 013436 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 282 (443)
..+...+..++|+|+|+++++++ .++.|.+||+.+++.+..+.. ...+.+++|+ +++
T Consensus 78 ---------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg 146 (337)
T 1pby_B 78 ---------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDG 146 (337)
T ss_dssp ---------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTS
T ss_pred ---------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC-CCC
Confidence 00222456789999999998886 579999999999887777654 4567889997 778
Q ss_pred CEEEEeeCCCeEEEEecccCCCCCceeeeecCCC--CCeEEEEECCCCCEEEEEeCCC----------------------
Q 013436 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL--EGITFIDSRGDGRYLISNGKDQ---------------------- 338 (443)
Q Consensus 283 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg---------------------- 338 (443)
++|+++ ++.|.+||+. .++.+..+..+. .+ +.|+|++..|+..+.++
T Consensus 147 ~~l~~~--~~~i~~~d~~----~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 147 SKLYGL--GRDLHVMDPE----AGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp SCEEEE--SSSEEEEETT----TTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred CEEEEe--CCeEEEEECC----CCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 777776 6789999987 444444433222 11 13444444332222111
Q ss_pred --CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCC----------CeeEEEEeccceeeeeeEEEecCCc
Q 013436 339 --AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC----------DQSVATYKGHSVLRTLIRCHFSPVY 406 (443)
Q Consensus 339 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (443)
.|.+||+.+.+.. ... ..........+.++++++.+.... .+.+..+..+. .. .++.|
T Consensus 218 ~~~v~~~d~~~~~~~-~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~~---~~----~~~~~ 287 (337)
T 1pby_B 218 RTGLLTMDLETGEMA-MRE--VRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPH---SY----YSVNV 287 (337)
T ss_dssp EEEEEEEETTTCCEE-EEE--EEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECSS---CC----CEEEE
T ss_pred ccceEEEeCCCCCce-Eee--cCCCCCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecCCC---ce----eeEEE
Confidence 1344444433221 000 000001111222333332222110 22333333221 11 23356
Q ss_pred cCCccEEEEeeCCCeEEEEEccChhhhhHhH
Q 013436 407 STGQKYIYTGSHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 407 s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~ 437 (443)
+|||++|++++.++.|++||+.+++.+..++
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 7799999999999999999999998776543
No 140
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=2e-22 Score=190.08 Aligned_cols=214 Identities=16% Similarity=0.123 Sum_probs=155.6
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCC----------eEEEE--eeecCCccceEEEEEECCCCCeEE----EE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----------WKIQK--DILAKSLRWTVTDTSLSPDQRHLV----YA 187 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~----------~~~~~--~~~~~~~~~~v~~i~~s~~~~~l~----~~ 187 (443)
...+..+++++++.++++++.++ ++||+.... ..+.. ......+...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34688999999999999999887 899875321 00110 001123455799999999999999 67
Q ss_pred ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEecCCeEEEEECCCCeeeEEee
Q 013436 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRIL 266 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 266 (443)
+.|+.|++||+.++......... .........+|...|.+++|+|+ +.+|++++.||.|++||++++..+....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~-----~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKR-----PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCC-----CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred CCCceEEEEEccccccCCcCCcc-----eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence 88999999998754100000000 00001122357779999999997 7899999999999999999997777777
Q ss_pred ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC-------CCCCeEEEEECCCCCEEEEEe-CCC
Q 013436 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------HLEGITFIDSRGDGRYLISNG-KDQ 338 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~-~dg 338 (443)
.|...|++++|+ +++++|++|+.||.|++||.+ +.....+.. |...|.+++|++++.++++.+ .||
T Consensus 190 ~~~~~v~~v~ws-pdg~~lasgs~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 190 PSTVAVTSVCWS-PKGKQLAVGKQNGTVVQYLPT-----LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp CGGGCEEEEEEC-TTSSCEEEEETTSCEEEECTT-----CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred CCCCceeEEEEc-CCCCEEEEEcCCCcEEEEccC-----CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 889999999998 779999999999999999986 233333332 233799999999888776433 343
Q ss_pred C------EEEEeCCCCC
Q 013436 339 A------IKLWDIRKMS 349 (443)
Q Consensus 339 ~------i~iwd~~~~~ 349 (443)
. +++|++++..
T Consensus 264 ~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 264 TLETSPDVVMALLPKKE 280 (434)
T ss_dssp CSSSCCEEEEEECCCTT
T ss_pred ccCCCCceEEEEeccCC
Confidence 3 8999998753
No 141
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=1.8e-21 Score=178.58 Aligned_cols=245 Identities=12% Similarity=0.128 Sum_probs=171.5
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE-EECCCeEEEEECCCCceeccc
Q 013436 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLA 207 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~ 207 (443)
.+++++++.++++++.++.|.+||+.+++.+...... ....+..++|+|+++.+++ ...++.|.+||+.+++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS--SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC--CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 3567889999999999999999999998665543322 1113678999999986654 456889999999988765433
Q ss_pred cceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC------------CeEEEEECCCCee---eEEeeccCCCe
Q 013436 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------------DCIYVYDLEANKL---SLRILAHTSDV 272 (443)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~v 272 (443)
...... ......+..++|+|+|+++++++.+ +.|.+||+.+++. +..+ .+...+
T Consensus 82 ~~~~~~----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~ 150 (349)
T 1jmx_B 82 NLSSVP----------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQV 150 (349)
T ss_dssp ESCCST----------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSC
T ss_pred Eccccc----------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcc
Confidence 221100 0002246789999999999998865 8999999988543 3333 334468
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC-------------------------------------
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------------------------------------- 315 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------------------------------- 315 (443)
.+++|+ ++++ +++++. .|.+||+. +++.+..+..+
T Consensus 151 ~~~~~s-~dg~-l~~~~~--~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 151 YLMRAA-DDGS-LYVAGP--DIYKMDVK----TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp CCEEEC-TTSC-EEEESS--SEEEECTT----TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred cceeEC-CCCc-EEEccC--cEEEEeCC----CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 899997 7777 555543 49999987 44444433221
Q ss_pred -------------------------------CCCeEEEEECC-CCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCc
Q 013436 316 -------------------------------LEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (443)
Q Consensus 316 -------------------------------~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (443)
...+..++|+| ++++++++ ++.|.+||+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~---------------- 284 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ---------------- 284 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT----------------
T ss_pred cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc----------------
Confidence 12455677889 99998888 88999999987
Q ss_pred ccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHhH
Q 013436 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~~ 437 (443)
.+.+..+..... . .+..|+|||++|++++.++.|++||+.+++.+..++
T Consensus 285 ------------------~~~~~~~~~~~~---~----~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 285 ------------------RKLIKAANLDHT---Y----YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp ------------------TEEEEEEECSSC---C----CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred ------------------CeEEEEEcCCCC---c----cceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 344444433221 1 223466789989888899999999999998776543
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=1e-21 Score=193.35 Aligned_cols=241 Identities=13% Similarity=0.025 Sum_probs=166.3
Q ss_pred CCceEEEEECCCCCEEEEEEC-CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC---CCeEEEEECC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVG 199 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~---dg~i~iwd~~ 199 (443)
..+|++++|+|||++||+++. ||++.||++.++.... ....+...+..++|+|| +.+++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE---CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe---eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 457999999999999999887 9999999997764332 22233357999999999 77777765 4455665543
Q ss_pred C---CceeccccceecccCceeeccCCCCceecEEEEEEeCCCC--EEEEEecCCeEEEEECCCCeeeEEeeccCCCeEE
Q 013436 200 S---GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (443)
Q Consensus 200 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 274 (443)
. +........ . .+...+|+|+++ .+++++ ++.+.+||+.+++...... +.. .+
T Consensus 97 ~~~~g~~~~l~~~--------------~----~~~~~~~s~dg~~~~~~s~~-~~~~~l~d~~~g~~~~l~~-~~~--~~ 154 (582)
T 3o4h_A 97 TSRPGEEQRLEAV--------------K----PMRILSGVDTGEAVVFTGAT-EDRVALYALDGGGLRELAR-LPG--FG 154 (582)
T ss_dssp TTSTTCCEECTTS--------------C----SBEEEEEEECSSCEEEEEEC-SSCEEEEEEETTEEEEEEE-ESS--CE
T ss_pred ccCCCccccccCC--------------C----CceeeeeCCCCCeEEEEecC-CCCceEEEccCCcEEEeec-CCC--ce
Confidence 3 221111110 0 233567888775 344444 4445699999887654443 333 88
Q ss_pred EEEeCCCCCEEEEeeCC----CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC--CEEEEeCCCC
Q 013436 275 VCFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRKM 348 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~ 348 (443)
++|+ ++|++|++++.+ +.|++||+. .++. ..+..|...+..++|+|||+.|+++..++ .|++||+.+.
T Consensus 155 ~~~s-pDG~~la~~~~~~~~~~~i~~~d~~----~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 155 FVSD-IRGDLIAGLGFFGGGRVSLFTSNLS----SGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp EEEE-EETTEEEEEEEEETTEEEEEEEETT----TCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred EEEC-CCCCEEEEEEEcCCCCeEEEEEcCC----CCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 9998 889999988777 789999986 4443 46778888899999999999999888888 8999999873
Q ss_pred CCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeE--EEecCCccCCccEEEEeeCCCeEEEEE
Q 013436 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR--CHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (443)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~d~~~l~tg~~dg~v~iwd 426 (443)
+ .. .+.+|........ ....+.|||||.++++++.||.+++|+
T Consensus 229 ~----------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 229 S----------------------------------VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp C----------------------------------EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred c----------------------------------EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 3 22 3333321111000 001122788999999999999999999
Q ss_pred ccChhhh
Q 013436 427 LVSIQIL 433 (443)
Q Consensus 427 ~~~g~~~ 433 (443)
+ |+.+
T Consensus 274 ~--g~~~ 278 (582)
T 3o4h_A 274 D--GERV 278 (582)
T ss_dssp T--TEEE
T ss_pred E--CCee
Confidence 8 6644
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.2e-21 Score=195.47 Aligned_cols=251 Identities=14% Similarity=0.070 Sum_probs=178.0
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCC-----CeEEEEeeecCCccce--------------EEEEEE
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQKDILAKSLRWT--------------VTDTSL 177 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~--------------v~~i~~ 177 (443)
...+..+...+.+++|||||++|+++ .++.|++||+.+ +..... ...+... +.+++|
T Consensus 113 ~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~---~~~~~~~~~~g~~~~~ee~~~~~~~~~ 188 (706)
T 2z3z_A 113 VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV---TIDGTETLVYGQAVHQREFGIEKGTFW 188 (706)
T ss_dssp EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEES---CSCCBTTEEESSCCGGGCTTCCCSEEE
T ss_pred eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEe---ccCCCCCeEcccchhhhhcCCCceEEE
Confidence 34455667789999999999999995 679999999988 744331 1112111 478999
Q ss_pred CCCCCeEEEEE---------------------------------CCCeEEEEECCCCceeccccceecccCceeeccCCC
Q 013436 178 SPDQRHLVYAS---------------------------------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (443)
Q Consensus 178 s~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (443)
||||++|++++ .+..|++||+.+++....... .
T Consensus 189 SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~--------------~ 254 (706)
T 2z3z_A 189 SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG--------------E 254 (706)
T ss_dssp CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC--------------S
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC--------------C
Confidence 99999999987 446899999988875433211 1
Q ss_pred CceecEEEEEEeCCCCEEEEEecCC-----eEEEEECCCCeeeEEee-c-cCC---CeEEEEEeCC--CCCEEEEeeCCC
Q 013436 225 GYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRIL-A-HTS---DVNTVCFGDE--SGHLIYSGSDDN 292 (443)
Q Consensus 225 ~~~~~i~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~-~~~---~v~~i~~~~~--~~~~l~~~~~d~ 292 (443)
.|...+.+++|+|||+.|++++.++ .|++||+.+++....+. . +.. .+.+++|+ + +++++++++.|+
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s-p~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL-PGSNNQFIWQSRRDG 333 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC-TTCSSEEEEEECTTS
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee-cCCCCEEEEEEccCC
Confidence 2344799999999999999987775 89999999983333332 2 222 24678998 6 888999999999
Q ss_pred eEEEEecccCCCCCceeeeecCCCCCeEE-EEECCCCCEEEEEeCC-C----CEEEEeCCCCCCccccCCcccccCcccc
Q 013436 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITF-IDSRGDGRYLISNGKD-Q----AIKLWDIRKMSSNASCNLGFRSYEWDYR 366 (443)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (443)
.++||++. ..+..+..+..+...+.. ++|+|+++.|+.++.+ + .|..||+.+..
T Consensus 334 ~~~l~~~~---~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----------------- 393 (706)
T 2z3z_A 334 WNHLYLYD---TTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----------------- 393 (706)
T ss_dssp SCEEEEEE---TTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-----------------
T ss_pred ccEEEEEE---CCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-----------------
Confidence 99999876 245667777778888877 7999999988765554 3 45666665522
Q ss_pred cccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCC----CeEEEEEccChh
Q 013436 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD----SCVYVYDLVSIQ 431 (443)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~d----g~v~iwd~~~g~ 431 (443)
...+. +.. . ..++.|||||++|+..+.+ +.|++||+.+++
T Consensus 394 ------------------~~~l~-~~~--~----~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 394 ------------------TKDLT-PES--G----MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ------------------CEESC-CSS--S----EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ------------------ceecc-CCC--c----eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 11111 111 1 1234577799988876544 569999998876
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=1.4e-21 Score=197.47 Aligned_cols=230 Identities=12% Similarity=0.061 Sum_probs=156.5
Q ss_pred ceeecccccCCCccccCCCC---ceEEEEECCCCCEEEEEECC---------CeEEEEECCCCeEEEEeeecCCccceEE
Q 013436 106 HMLSRYLPVNGPWPVDQTTS---RAYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVT 173 (443)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~~g~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 173 (443)
..++.....+....+.+|.. .|.+++|||||++|++++.+ +.|.+||+.++.. ........+...+.
T Consensus 39 i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 117 (723)
T 1xfd_A 39 VRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQ 117 (723)
T ss_dssp EEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCS
T ss_pred EEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCcccccccc
Confidence 33444444444555566654 49999999999999999874 7788999998854 33333344555588
Q ss_pred EEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCC----CCceecEEEEEEeCCCCEEEEEecCC
Q 013436 174 DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD----GGYSFGIFSLKFSTDGRELVAGSSDD 249 (443)
Q Consensus 174 ~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~~~~~~~l~~~~~dg 249 (443)
.++|||||+.|++++. +.|++||+.+++...+..... ....+..... +.....+.+++|+|||+.|++++.++
T Consensus 118 ~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~--~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~ 194 (723)
T 1xfd_A 118 YAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGK--EGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND 194 (723)
T ss_dssp BCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCB--TTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred ccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCC--CCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC
Confidence 8999999999999886 789999999876654332110 0000000000 00001247899999999999987553
Q ss_pred ----------------------------------eEEEEECCCCeeeEEeecc------CCCeEEEEEeCCCCCEEEEee
Q 013436 250 ----------------------------------CIYVYDLEANKLSLRILAH------TSDVNTVCFGDESGHLIYSGS 289 (443)
Q Consensus 250 ----------------------------------~i~iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~ 289 (443)
.|++||+.+++....+..+ ...+..++|+ ++++++++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~S-pDg~~l~~~~ 273 (723)
T 1xfd_A 195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA-TSTKVAVTWL 273 (723)
T ss_dssp TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-SSSEEEEEEE
T ss_pred CccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEe-CCCeEEEEEE
Confidence 7999999988865666544 5678999998 7888887664
Q ss_pred C----CCeEEEEecccCCCCCceeeeecC-CCCCe----EEEEECCCCCEEEE--EeCCC------CEEEEe
Q 013436 290 D----DNLCKVWDRRCLNVKGKPAGVLMG-HLEGI----TFIDSRGDGRYLIS--NGKDQ------AIKLWD 344 (443)
Q Consensus 290 ~----d~~i~iwd~~~~~~~~~~~~~~~~-~~~~v----~~~~~~~~~~~l~s--~~~dg------~i~iwd 344 (443)
. +..|.+||+. +++....+.. +...+ ..++|+|||+.|+. +..++ .|.+||
T Consensus 274 ~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 274 NRAQNVSILTLCDAT----TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp ETTSCEEEEEEEETT----TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred cCCCCeEEEEEEeCC----CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 3 3579999997 6665555433 33333 37899999997764 45566 466677
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=5.7e-21 Score=200.26 Aligned_cols=196 Identities=15% Similarity=0.077 Sum_probs=163.8
Q ss_pred CCCceEEEEEC-CCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccc-eEEEEEECCCCCeEEEEECCCeEE-EEECC
Q 013436 123 TTSRAYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-TVTDTSLSPDQRHLVYASMSPIVH-IVDVG 199 (443)
Q Consensus 123 h~~~v~~~~~s-~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~i~~s~~~~~l~~~~~dg~i~-iwd~~ 199 (443)
|...+.+++|| |||++|++++ ++.|.+|++.++.... ...+.. .+..++|+ |++.|++++.++.+. +|++.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~ 367 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR 367 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE----ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC
Confidence 44579999999 9999999887 7899999998875332 344555 79999999 999999999888888 99998
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeC
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (443)
+++...+. +|...+..++|+|||++|++++.++.|++||+.+++....+..|...+.+++|+
T Consensus 368 ~~~~~~l~-----------------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S- 429 (1045)
T 1k32_A 368 TGKAEKFE-----------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS- 429 (1045)
T ss_dssp TCCEEECC-----------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC-
T ss_pred CCCceEec-----------------CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC-
Confidence 77543322 133478999999999999999999999999999998877777899999999998
Q ss_pred CCCCEEEEeeCCC----------eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 280 ESGHLIYSGSDDN----------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 280 ~~~~~l~~~~~d~----------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+++++|++++.++ .|++||+. .++ +..+..|...+..++|+|+|++|++++.++...+|+...
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~----~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDME----GRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETT----TTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECC----CCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 8899888877654 89999997 555 667778888899999999999999999988888888654
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=3.7e-20 Score=168.74 Aligned_cols=239 Identities=12% Similarity=0.076 Sum_probs=163.8
Q ss_pred EECCCCCE-EEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC-CCeEEEEECCCCce-eccc
Q 013436 131 QFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTM-ESLA 207 (443)
Q Consensus 131 ~~s~~~~~-l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~~ 207 (443)
.|.+++++ +++++.++.|.+||+.+++.+.... .+...+ .++|+|+++++++++. ++.|.+||+.+++. ....
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT---LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE---CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE---ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 45666555 6677788999999999987655433 223345 9999999997777665 88999999998875 2221
Q ss_pred cceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC---eEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCC-
Q 013436 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH- 283 (443)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~- 283 (443)
.. +..+..+++|+|++++++++..++ .|.+||+.+++.+..+.. .....+++|+ ++++
T Consensus 80 ~~----------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-pdg~~ 141 (331)
T 3u4y_A 80 QE----------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAIS-PNGNG 141 (331)
T ss_dssp EE----------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEEC-TTSSC
T ss_pred cc----------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEEC-CCCCE
Confidence 11 111344489999999999665553 899999999988877754 4456899998 6665
Q ss_pred EEEEeeCCCe-EEEEecccCCCCCcee---eeecCCCCCeEEEEECCCCCEEEEE-eCCCCEEEEeCCCCCCccccCCcc
Q 013436 284 LIYSGSDDNL-CKVWDRRCLNVKGKPA---GVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGF 358 (443)
Q Consensus 284 ~l~~~~~d~~-i~iwd~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~ 358 (443)
+++++..++. |.+|++... +... ............++|+|+|++|+++ ..++.|.+||+.+.+..
T Consensus 142 l~~~~~~~~~~i~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~------- 211 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDAD---GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI------- 211 (331)
T ss_dssp EEEEEETTTTEEEEEEECTT---CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-------
T ss_pred EEEEecCCCceEEEEEECCC---CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-------
Confidence 5555566678 999998721 1111 1222344568999999999966554 46889999999874320
Q ss_pred cccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEee-CCCeEEEEEccChhh
Q 013436 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSIQI 432 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~-~dg~v~iwd~~~g~~ 432 (443)
+.+..+..+. .. ..+.|+|||++|++++ .++.|.+||+.++++
T Consensus 212 ------------------------~~~~~~~~~~---~~----~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 212 ------------------------TLLNAVGTNN---LP----GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ------------------------EEEEEEECSS---CC----CCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred ------------------------ceeeeccCCC---CC----ceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 1133443332 11 2334677999776554 588999999998876
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=3.6e-19 Score=164.30 Aligned_cols=265 Identities=12% Similarity=0.147 Sum_probs=169.0
Q ss_pred CCCceEEEEECCCCCEEEEEECC----CeEEEEECCCC-eEEEEeeecCCccceEEEEEECCCCCeEEEEE-CCCeEEEE
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQA----SQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIV 196 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d----~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iw 196 (443)
+...+..++|+|||++|++++.+ +.|.+|++... ..+........+...+..+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56778889999999999999886 79999988652 133322222333345677787 888887776 57899999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe-cCCeEEEEECCCCee------e-------
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKL------S------- 262 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------~------- 262 (443)
++................+. .......+...+.+++|+|+|+++++++ .++.|.+|++..... +
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGS--GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCC--CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCC--CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 99754432221111001100 0000111233578899999999776655 478999998875431 1
Q ss_pred EEeeccCCCeEEEEEeCCCCCEEEEee-CCCeEEEEecccCCCCCce--eeee---cCCCCCeEEEEECCCCCEEEEEeC
Q 013436 263 LRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKP--AGVL---MGHLEGITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l~s~~~ 336 (443)
.....+...+..++|+ ++++++++++ .++.|.+||+. .+.. +..+ ..+......++|+|+|++|+++..
T Consensus 204 ~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~----~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYA----DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp EEECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEE----TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred ceecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEec----CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence 1122345567899998 7888777766 68999999997 4432 2222 233456789999999999876665
Q ss_pred C--CCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEE
Q 013436 337 D--QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (443)
Q Consensus 337 d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 414 (443)
+ +.|.+|++...... ...+..+.. . .... +.+|+|||++|+
T Consensus 279 ~~~~~i~v~~~~~~~g~------------------------------~~~~~~~~~-g--~~~~----~~~~spdg~~l~ 321 (361)
T 3scy_A 279 LKADGVAIFKVDETNGT------------------------------LTKVGYQLT-G--IHPR----NFIITPNGKYLL 321 (361)
T ss_dssp SSSCEEEEEEECTTTCC------------------------------EEEEEEEEC-S--SCCC----EEEECTTSCEEE
T ss_pred CCCCEEEEEEEcCCCCc------------------------------EEEeeEecC-C--CCCc----eEEECCCCCEEE
Confidence 4 88999999631100 012222222 1 1111 234677999988
Q ss_pred Eee-CCCeEEEE--EccChhhh
Q 013436 415 TGS-HDSCVYVY--DLVSIQIL 433 (443)
Q Consensus 415 tg~-~dg~v~iw--d~~~g~~~ 433 (443)
+++ .++.|.+| |..+|++.
T Consensus 322 ~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 322 VACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp EEETTTTEEEEEEECTTTCCEE
T ss_pred EEECCCCCEEEEEEECCCCcEe
Confidence 887 67999996 44567654
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=1.8e-21 Score=183.62 Aligned_cols=169 Identities=11% Similarity=0.029 Sum_probs=127.8
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCc-eeeccCCCCceecEEEEEEeCCCCEEE----EE
Q 013436 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL-DFSAADDGGYSFGIFSLKFSTDGRELV----AG 245 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~----~~ 245 (443)
.+..+++++++.++++++.++ +++|+....... .......... .+.......+...|.+++|+|++++|+ +|
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ--NKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC--CCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhh--cccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 478899999999999999888 889876421110 0000000000 000000012344799999999999999 78
Q ss_pred ecCCeEEEEECCCC--------ee---eEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC
Q 013436 246 SSDDCIYVYDLEAN--------KL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 314 (443)
Q Consensus 246 ~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 314 (443)
+.|+.|++||++++ +. ...+.+|...|.+++|+|..+++|++++.||+|++||++ .+..+....+
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~----~~~~~~~~~~ 190 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT----ETVKVCATLP 190 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES----SSEEEEEEEC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC----CCcceeeccC
Confidence 88999999998664 22 344557999999999996568999999999999999998 6666666677
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 315 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
|...|++++|+|+|++|++++.||.|++||++
T Consensus 191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp GGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 88999999999999999999999999999998
No 149
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=1.8e-20 Score=171.51 Aligned_cols=189 Identities=12% Similarity=0.162 Sum_probs=131.6
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC-CeEEEEECC--CCceeccccceeccc
Q 013436 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHIVDVG--SGTMESLANVTEIHD 214 (443)
Q Consensus 138 ~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~ 214 (443)
++++++.++.|++|++.......... ...+...+.+++|+|++++|++++.+ +.|.+|++. +++.........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--- 82 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--- 82 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEee-eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc---
Confidence 34444779999999996321111111 12344568889999999999998887 899999997 554432222111
Q ss_pred CceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECC---CCeeeEEeeccCCCeEEEEEeCCCCCEEEEee-
Q 013436 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE---ANKLSLRILAHTSDVNTVCFGDESGHLIYSGS- 289 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~- 289 (443)
+ ..+..++|+|++++|++++. ++.|.+||+. ..+.+..+. ....+.+++|+ ++++++++++
T Consensus 83 -----------~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s-~dg~~l~~~~~ 148 (343)
T 1ri6_A 83 -----------P-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANIS-PDNRTLWVPAL 148 (343)
T ss_dssp -----------S-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEEC-TTSSEEEEEEG
T ss_pred -----------C-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEEC-CCCCEEEEecC
Confidence 1 15678999999998877665 8899999994 334444443 34468899998 7787777776
Q ss_pred CCCeEEEEecccCCCCCceee----eec-CCCCCeEEEEECCCCCEEEEEe-CCCCEEEEeCCC
Q 013436 290 DDNLCKVWDRRCLNVKGKPAG----VLM-GHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 347 (443)
Q Consensus 290 ~d~~i~iwd~~~~~~~~~~~~----~~~-~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 347 (443)
.++.|.+||+.. .++... .+. .....+..++|+|++++|++++ .++.|.+||+..
T Consensus 149 ~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 149 KQDRICLFTVSD---DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp GGTEEEEEEECT---TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred CCCEEEEEEecC---CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 899999999972 133321 222 2345788999999999776554 789999999964
No 150
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=3.3e-21 Score=195.27 Aligned_cols=207 Identities=12% Similarity=0.043 Sum_probs=149.8
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCC---eEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERG---WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
.|.+++|||||++|++++. +.|.+||+.++ ... ....+...+..++|||||++|++++. +.|++||+.+++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~----~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~ 183 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR----QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGR 183 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC----BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE----EcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCC
Confidence 4889999999999999987 89999999886 322 23455667999999999999999874 689999999877
Q ss_pred eeccccceecccCceeeccCC---CCceecEEEEEEeCCCCEEEEEecCC------------------------------
Q 013436 203 MESLANVTEIHDGLDFSAADD---GGYSFGIFSLKFSTDGRELVAGSSDD------------------------------ 249 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~~~~dg------------------------------ 249 (443)
...+...... .. ...... ......+..++|+|||++|++++.|+
T Consensus 184 ~~~~~~~~~~--~~-~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 184 QMQLTADGST--TI-GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp EEECCCCCCS--SE-EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred EEEeccCCcc--ce-eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 6543321110 00 000000 00001246799999999999988765
Q ss_pred ---eEEEEECCC-CeeeEEee--ccCCCeEEEEEeCCCCCEEEEeeC-----CCeEEEEecccCCCCCceeeeecCCCC-
Q 013436 250 ---CIYVYDLEA-NKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLNVKGKPAGVLMGHLE- 317 (443)
Q Consensus 250 ---~i~iwd~~~-~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~- 317 (443)
.|++||+.+ ++...... .|...+..++| ++++.|++++. +..|.+||+. +++....+..+..
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~ 334 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLA----SNQQRVLAHETSPT 334 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETT----TCCEEEEEEEECSS
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECC----CCceEEEEEcCCCC
Confidence 899999988 77544332 36778999999 56677766543 5689999998 6666655554443
Q ss_pred ---CeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 318 ---GITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 318 ---~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.+..++|+|||+++++++.||.++||.+..
T Consensus 335 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 335 WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp CCCCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred cCCcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence 456889999999889999999888887763
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=3.6e-19 Score=163.58 Aligned_cols=201 Identities=11% Similarity=0.090 Sum_probs=151.8
Q ss_pred CCceEEEEECCCCCEEEEE-ECCCeEEEEECCCCeEEEEeeecCCc------cceEEEEEECCCCCeEEEEE--CCCeEE
Q 013436 124 TSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSL------RWTVTDTSLSPDQRHLVYAS--MSPIVH 194 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g-~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~v~~i~~s~~~~~l~~~~--~dg~i~ 194 (443)
...+..++|+|+|++++++ ..++.|.+||..+++.+......... ...+.+++|+|+++.+++++ .++.|.
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW 167 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence 3457889999999966554 45789999999998766544332111 11378899999999888776 478999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec----cCC
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----HTS 270 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~ 270 (443)
+||+.+++........ ...+..++|+|+++.+++++.++.|.+||+.+++.+..+.. +..
T Consensus 168 ~~d~~~~~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 231 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQNT----------------GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEH 231 (353)
T ss_dssp EEETTTTEEEEEECCC----------------CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCC
T ss_pred EEcCCCCceEEEecCC----------------CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc
Confidence 9999988765433211 11366789999999999999999999999999988877764 455
Q ss_pred CeEEEEEeCCCCCEEEEee-CCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe-CCCCEEEEeCCC
Q 013436 271 DVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 347 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 347 (443)
.+..++|+ ++++.+++++ .++.|.+||.. +++.+..+.... ...++|+|+++++++++ .++.|.+||+.+
T Consensus 232 ~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~----~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 232 FFINISLD-TARQRAFITDSKAAEVLVVDTR----NGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp CEEEEEEE-TTTTEEEEEESSSSEEEEEETT----TCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred ccceEEEC-CCCCEEEEEeCCCCEEEEEECC----CCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 67889998 6677655555 55999999998 677776665433 25689999999666555 689999999987
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=1.9e-20 Score=188.56 Aligned_cols=253 Identities=11% Similarity=0.042 Sum_probs=171.7
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC----
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS---- 200 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~---- 200 (443)
..|.+++|||| +.++.+. ++.|++||+.+++.... ..+...+.+++|||||+.|+++ .++.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l----~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL----FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE----ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc----cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 57999999999 6666664 59999999998854332 2234457889999999999985 679999999988
Q ss_pred -Cceeccccceecc--cCceeeccCCCCceecEEEEEEeCCCCEEEEEe-------------------------------
Q 013436 201 -GTMESLANVTEIH--DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------------------------- 246 (443)
Q Consensus 201 -~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~------------------------------- 246 (443)
++........... .+.. ....+...+.++.|+|||++|++++
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~----~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQA----VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp CCCCEESCSCCBTTEEESSC----CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred CCCcEEeccCCCCCeEcccc----hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence 6654432211100 0000 0000011257899999999999987
Q ss_pred --cCCeEEEEECCCCeeeEEee--ccCCCeEEEEEeCCCCCEEEEeeCCC-----eEEEEecccCCCCCceeeeec--CC
Q 013436 247 --SDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKGKPAGVLM--GH 315 (443)
Q Consensus 247 --~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~--~~ 315 (443)
.+..|++||+.+++...... .|...+.+++|+ ++++.|++++.++ .|.+||+. +++....+. .+
T Consensus 231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~----~g~~~~~~~~~~~ 305 (706)
T 2z3z_A 231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAE----TGRFVRTLFVETD 305 (706)
T ss_dssp CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETT----TCCEEEEEEEEEC
T ss_pred CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECC----CCceeeEEEEccC
Confidence 34679999999887544332 456779999998 8899888887775 89999997 552333222 12
Q ss_pred CC---CeEEEEECC--CCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEec
Q 013436 316 LE---GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (443)
Q Consensus 316 ~~---~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (443)
.. .+..++|+| +|++|++++.|+.++||++... +..+..+..
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~---------------------------------~~~~~~l~~ 352 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT---------------------------------GRLIRQVTK 352 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT---------------------------------SCEEEECCC
T ss_pred CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC---------------------------------CCEEEecCC
Confidence 22 246789999 9999999999999999987621 233444444
Q ss_pred cceeeeeeEEEecCCccCCccEEEEeeC-CC----eEEEEEccChh
Q 013436 391 HSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS----CVYVYDLVSIQ 431 (443)
Q Consensus 391 ~~~~~~~~~~~~~~~~s~d~~~l~tg~~-dg----~v~iwd~~~g~ 431 (443)
+..... . .+.|+|||+.|+.++. ++ .|+.||+.+++
T Consensus 353 ~~~~v~--~---~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 353 GEWEVT--N---FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp SSSCEE--E---EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred CCeEEE--e---eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 432111 1 1246678987765554 44 77888887765
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=1.5e-20 Score=197.02 Aligned_cols=247 Identities=16% Similarity=0.161 Sum_probs=189.0
Q ss_pred CCCccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecC--------CccceEEEEEEC-CCCCeEE
Q 013436 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK--------SLRWTVTDTSLS-PDQRHLV 185 (443)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~v~~i~~s-~~~~~l~ 185 (443)
.....+..|. .+.+.+|+|||++|+.+ .++.|.+|++... .+....... .|...+.+++|+ |||+.|+
T Consensus 236 ~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la 312 (1045)
T 1k32_A 236 KDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA 312 (1045)
T ss_dssp CSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE
T ss_pred CcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEE
Confidence 3444555555 46778999999999988 5899999999554 333211100 133458899999 9999999
Q ss_pred EEECCCeEEEEECCCCceeccccceecccCceeeccCCCCcee-cEEEEEEeCCCCEEEEEecCCeEE-EEECCCCeeeE
Q 013436 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF-GIFSLKFSTDGRELVAGSSDDCIY-VYDLEANKLSL 263 (443)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~ 263 (443)
+++ ++.|.+|++.++...... .|.. .+..++|+ ||+.|++++.++.|. +||+.+++..
T Consensus 313 ~~~-~~~i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~- 372 (1045)
T 1k32_A 313 FVS-RGQAFIQDVSGTYVLKVP-----------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE- 372 (1045)
T ss_dssp EEE-TTEEEEECTTSSBEEECS-----------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-
T ss_pred EEE-cCEEEEEcCCCCceEEcc-----------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-
Confidence 988 789999999877643321 1333 68899999 999999999888899 9999887644
Q ss_pred EeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC-----
Q 013436 264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ----- 338 (443)
Q Consensus 264 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----- 338 (443)
.+..|...+..++|+ +++++|++++.++.|++||+. +++......+|...+..++|+|||++|++++.++
T Consensus 373 ~l~~~~~~~~~~~~S-pDG~~la~~~~~~~v~~~d~~----tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 373 KFEENLGNVFAMGVD-RNGKFAVVANDRFEIMTVDLE----TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp ECCCCCCSEEEEEEC-TTSSEEEEEETTSEEEEEETT----TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred EecCCccceeeeEEC-CCCCEEEEECCCCeEEEEECC----CCceEEeccCCCCCccceEECCCCCeEEEEecCcccccc
Confidence 444778899999998 889999999999999999998 7777777768989999999999999999887654
Q ss_pred -----CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEE
Q 013436 339 -----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 413 (443)
Q Consensus 339 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 413 (443)
.|++||+.+. + +..+..|... ..++.|+|||++|
T Consensus 448 ~~~~~~i~l~d~~~g----------------------------------~-~~~l~~~~~~------~~~~~~spdG~~l 486 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGR----------------------------------K-IFAATTENSH------DYAPAFDADSKNL 486 (1045)
T ss_dssp SCCEEEEEEEETTTT----------------------------------E-EEECSCSSSB------EEEEEECTTSCEE
T ss_pred CCCCCeEEEEECCCC----------------------------------c-EEEeeCCCcc------cCCceEcCCCCEE
Confidence 8999999872 2 3444444321 1234577899999
Q ss_pred EEeeCCCeEEEEEccCh
Q 013436 414 YTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 414 ~tg~~dg~v~iwd~~~g 430 (443)
++++.++...+|+....
T Consensus 487 ~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 487 YYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp EEEESCCCCCEECSSSS
T ss_pred EEEecccCCcCcchhcc
Confidence 99999988888886543
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=192.57 Aligned_cols=193 Identities=13% Similarity=0.140 Sum_probs=140.1
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccc---eEEEEEECCCCCeEEEEEC---------CCeEEEE
Q 013436 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASM---------SPIVHIV 196 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~i~~s~~~~~l~~~~~---------dg~i~iw 196 (443)
.++|+|||+++++ +.|+.|++||+.++..... ...+.. .+.+++|||||++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTI---LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEE---ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEE---EccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 6799999965555 4699999999999865432 222222 3889999999999998876 7899999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEe-eccCCCe---
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDV--- 272 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v--- 272 (443)
|+.+++......+. ..+..++|||||+.|+++. ++.|++||+.+++..... .++...|
T Consensus 96 d~~~g~~~~~~~l~-----------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g 157 (719)
T 1z68_A 96 DLSNGEFVRGNELP-----------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG 157 (719)
T ss_dssp ETTTTEECCSSCCC-----------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred ECCCCccccceecC-----------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence 99988762111111 1577899999999999986 789999999888764432 1222222
Q ss_pred --------------EEEEEeCCCCCEEEEeeCCC----------------------------------eEEEEecccCCC
Q 013436 273 --------------NTVCFGDESGHLIYSGSDDN----------------------------------LCKVWDRRCLNV 304 (443)
Q Consensus 273 --------------~~i~~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~ 304 (443)
.+++|+ |+|+.|++++.|. .|++||+.
T Consensus 158 ~~~~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~---- 232 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT---- 232 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS----
T ss_pred cccceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC----
Confidence 489998 8899999887652 78899987
Q ss_pred CCcee--------eeecCCCCCeEEEEECCCCCEEEEEeCC----CCEEEEe----CCCC
Q 013436 305 KGKPA--------GVLMGHLEGITFIDSRGDGRYLISNGKD----QAIKLWD----IRKM 348 (443)
Q Consensus 305 ~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd----~~~~ 348 (443)
.++.. ..+.+|...+..++|+||++++++.... ..|.+|| +.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence 44432 2234677889999999998877764432 2488889 6553
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=1.5e-18 Score=160.34 Aligned_cols=249 Identities=10% Similarity=0.065 Sum_probs=163.7
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECC-CCeEEEEeeecCCccceEEEEEECCCCCe--EEEEE-------------
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYAS------------- 188 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~i~~s~~~~~--l~~~~------------- 188 (443)
..+..++|+|||++|++++.+ .|.+|++. +++...... ...+ +.+..++|+|++++ ++++.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE-EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE-eecC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 467889999999999999887 99999997 775433211 1111 12445899999995 44442
Q ss_pred CCCeEEEEECCC-CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECC-CCeee--E
Q 013436 189 MSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE-ANKLS--L 263 (443)
Q Consensus 189 ~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~--~ 263 (443)
.++.+.+|++.. ++.......... .+...+.+++|+|||++++++.. ++.|++||+. +++.. .
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~------------~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~ 184 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEY------------QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG 184 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEEC------------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEe------------CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee
Confidence 689999999974 543322111100 01226889999999998887764 6799999998 67543 2
Q ss_pred Eee--ccCCCeEEEEEeCCCCCEEEEeeC-CCeEEEEecccCCCCCcee------eeec----CCCC------CeEEEE-
Q 013436 264 RIL--AHTSDVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPA------GVLM----GHLE------GITFID- 323 (443)
Q Consensus 264 ~~~--~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~------~~~~----~~~~------~v~~~~- 323 (443)
.+. .+...+..++|+ ++++++++++. ++.|.+|++... +++.. ..+. +|.. .+..++
T Consensus 185 ~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~--~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 185 SVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPA--THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp EEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred eEecCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeCC--CCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 333 235678999998 88888877764 789999987521 23321 1221 1222 488999
Q ss_pred ECCCCCEEEEEeCC-C-----CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEE---EEecccee
Q 013436 324 SRGDGRYLISNGKD-Q-----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA---TYKGHSVL 394 (443)
Q Consensus 324 ~~~~~~~l~s~~~d-g-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 394 (443)
|+|||++|+++..+ + .|.+|++... ++... ....+...
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~---------------------------------g~~~~~~~~~~~~~~~ 308 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDC---------------------------------GSIEKQLFLSPTPTSG 308 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTT---------------------------------SCEEEEEEEEECSSCC
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCC---------------------------------CCEEEeeeeeecCCCC
Confidence 99999988876543 2 7999998631 11111 12111110
Q ss_pred eeeeEEEecCCccC---CccEEEEeeCC-CeEEEEEccCh
Q 013436 395 RTLIRCHFSPVYST---GQKYIYTGSHD-SCVYVYDLVSI 430 (443)
Q Consensus 395 ~~~~~~~~~~~~s~---d~~~l~tg~~d-g~v~iwd~~~g 430 (443)
....+|+| ||++|++++.+ +.|.+|++...
T Consensus 309 ------~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 309 ------GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ------TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ------cccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 12345778 79999998864 99999998765
No 156
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=2.6e-17 Score=146.60 Aligned_cols=248 Identities=13% Similarity=0.149 Sum_probs=174.0
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeec---CCccceEEEEEE-CCCCCeEEEEEC-CCeEEE
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA---KSLRWTVTDTSL-SPDQRHLVYASM-SPIVHI 195 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~i~~-s~~~~~l~~~~~-dg~i~i 195 (443)
.++-..+.+++++++|+++++...++.|.+||.. +..+...... ..+...+..+++ .+++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3455678999999999988888889999999987 4344332211 123346889999 567766655533 789999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee--ccCCCeE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVN 273 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~ 273 (443)
||. +++....... .+...+..++++|+|+++++...++.|++||.. ++.+..+. .+...+.
T Consensus 105 ~d~-~g~~~~~~~~---------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 105 YNQ-YGQFVRKFGA---------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp ECT-TSCEEEEECT---------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred ECC-CCcEEEEecC---------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence 994 4443322111 111257889999999988877778999999964 55555553 3445689
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC--CCCeEEEEECCCCCEEEEEeCCC-CEEEEeCCCCCC
Q 013436 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSS 350 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~ 350 (443)
.++++ ++++++++...++.|.+||.. +..+..+..+ ...+..++++++|+++++...++ .|.+||...
T Consensus 168 ~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g--- 238 (286)
T 1q7f_A 168 GVVVN-DKQEIFISDNRAHCVKVFNYE-----GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--- 238 (286)
T ss_dssp EEEEC-SSSEEEEEEGGGTEEEEEETT-----CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---
T ss_pred EEEEC-CCCCEEEEECCCCEEEEEcCC-----CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC---
Confidence 99997 778888887889999999974 4555555433 36789999999999888888776 999999543
Q ss_pred ccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
+.+..+..+........+ +++|+|+++++ +.|+.|++|++...
T Consensus 239 --------------------------------~~~~~~~~~~~~~~~~~i----~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 --------------------------------QLISALESKVKHAQCFDV----ALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp --------------------------------CEEEEEEESSCCSCEEEE----EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred --------------------------------CEEEEEcccCCCCcceeE----EECCCCcEEEE-CCCCeEEEEEcccc
Confidence 345555544322222233 35568987777 67999999998765
Q ss_pred hh
Q 013436 431 QI 432 (443)
Q Consensus 431 ~~ 432 (443)
..
T Consensus 282 ~p 283 (286)
T 1q7f_A 282 AP 283 (286)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=1.3e-18 Score=162.10 Aligned_cols=253 Identities=15% Similarity=0.078 Sum_probs=168.2
Q ss_pred CCccccCCCCceEE-----EEECCCCCEEEEEEC-CC--eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE
Q 013436 116 GPWPVDQTTSRAYV-----SQFSADGSLFVAGFQ-AS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (443)
Q Consensus 116 ~~~~~~~h~~~v~~-----~~~s~~~~~l~~g~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 187 (443)
....+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ....+...+..+.|+||++.|+++
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSSEEEEE
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCCEEEEE
Confidence 34445555555555 789999999999887 66 48889999885443 233444444467899999999999
Q ss_pred ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEE--EEEEeCCCCEEEEE--------------------
Q 013436 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF--SLKFSTDGRELVAG-------------------- 245 (443)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~l~~~~~~~~l~~~-------------------- 245 (443)
+.++.|++||+.+++...+..... ..+. ...++|+++.++..
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~----------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPA----------------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFY 162 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCT----------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHG
T ss_pred eCCCeEEEEECCCCcceeeeechh----------------hcccccceeECCCCCeeccccccCcccccccccchhhhhh
Confidence 999999999999987654433211 0222 23458999987743
Q ss_pred --ecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCC-CCCEEEEeeCC------CeEEEEecccCCCCCceeeeecCCC
Q 013436 246 --SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGHL 316 (443)
Q Consensus 246 --~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~ 316 (443)
..+..|++||+.+++. ..+..+...+..+.|+ + +++.|+....+ ..|.++|.. +.....+..+.
T Consensus 163 ~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~-----~~~~~~l~~~~ 235 (388)
T 3pe7_A 163 FTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINED-----GTNMRKVKTHA 235 (388)
T ss_dssp GGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETT-----SCCCEESCCCC
T ss_pred ccCCcceEEEEECCCCce-EEeecCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCC-----CCceEEeeeCC
Confidence 2346799999998864 4455667789999998 6 88888776653 367777764 33334444444
Q ss_pred --CCeEEEEECCCCCEEEEEeC-CC----CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEe
Q 013436 317 --EGITFIDSRGDGRYLISNGK-DQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (443)
Q Consensus 317 --~~v~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (443)
..+..++|+|||+.|+..+. ++ .|++||+.+.+. ..+..+.
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--------------------------------~~l~~~~ 283 (388)
T 3pe7_A 236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--------------------------------RQLTSMP 283 (388)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--------------------------------EEEEEEC
T ss_pred CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--------------------------------EEEEcCC
Confidence 35778899999997765443 22 399999987431 1222333
Q ss_pred ccceeeeeeEEEec---CCccCCccEEEEe---------eCCCeEEEEEccChhh
Q 013436 390 GHSVLRTLIRCHFS---PVYSTGQKYIYTG---------SHDSCVYVYDLVSIQI 432 (443)
Q Consensus 390 ~~~~~~~~~~~~~~---~~~s~d~~~l~tg---------~~dg~v~iwd~~~g~~ 432 (443)
++. ..... ..|||||+.|+.. ..+..|++||+.+++.
T Consensus 284 ~~~------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 284 ACS------HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp CEE------EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred Cce------eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 211 11111 2478899988854 4567899999988764
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=3.2e-19 Score=180.25 Aligned_cols=196 Identities=12% Similarity=0.084 Sum_probs=140.1
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccc-----eEEEEEECCCCCeEEEEECC---------C
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLSPDQRHLVYASMS---------P 191 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~i~~s~~~~~l~~~~~d---------g 191 (443)
....++|+|||++++++ |+.|++||+.++..... ...|.. ....++|||||++|++++.+ +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF---LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE---ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEE---EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 46688999999999886 89999999999865432 222221 23458899999999998876 5
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEe-eccCC
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTS 270 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~ 270 (443)
.+.+||+.+++...+.. +...+...+|||||+.|+.+. ++.|++||+.+++..+.. .++..
T Consensus 93 ~~~~~d~~~~~~~~l~~-----------------~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~ 154 (740)
T 4a5s_A 93 SYDIYDLNKRQLITEER-----------------IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKED 154 (740)
T ss_dssp EEEEEETTTTEECCSSC-----------------CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTT
T ss_pred EEEEEECCCCcEEEccc-----------------CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcc
Confidence 67799999987654322 223688999999999999885 688999999888754321 12222
Q ss_pred Ce-----------------EEEEEeCCCCCEEEEeeCCC------------------------------------eEEEE
Q 013436 271 DV-----------------NTVCFGDESGHLIYSGSDDN------------------------------------LCKVW 297 (443)
Q Consensus 271 ~v-----------------~~i~~~~~~~~~l~~~~~d~------------------------------------~i~iw 297 (443)
.+ ..+.|+ |+|+.|+.++.|. .|++|
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~wS-pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred ceecCcccccccchhcCCCcceEEC-CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 22 358998 8899888875322 47778
Q ss_pred ecccCCCC---Cc--eeeeec------CCCCCeEEEEECCCCCEEEEEeC----CCCEEEEeCCCCC
Q 013436 298 DRRCLNVK---GK--PAGVLM------GHLEGITFIDSRGDGRYLISNGK----DQAIKLWDIRKMS 349 (443)
Q Consensus 298 d~~~~~~~---~~--~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~ 349 (443)
|+. . +. ....+. +|...+..++|+|||+.++.... +..|++||+.+.+
T Consensus 234 d~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 234 NTD----SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp ETT----SCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred ECC----CCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 876 3 31 222332 37777999999999997665432 3469999998754
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=3.9e-18 Score=155.43 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=147.3
Q ss_pred ceEEEEECCCCCEEE-EEECCCeEEEEECCCCeEEEEeeecCC--ccceEEEEEECCCCCeEEEEE------------CC
Q 013436 126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYAS------------MS 190 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~-~g~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~i~~s~~~~~l~~~~------------~d 190 (443)
.+..++|+|+|++++ ++..++.|.+||+.+++.+........ +...+..++|+|++++|+++. .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 478899999998765 455578999999999876654332210 122467899999999998886 57
Q ss_pred CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccC-
Q 013436 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT- 269 (443)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 269 (443)
+.|.+||+.+++........ ..+.+++|+|++++|+++ ++.|++||+.+++.+..+..+.
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~ 175 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAP-----------------RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW 175 (337)
T ss_dssp CEEEEEETTTTEEEEEEECC-----------------SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT
T ss_pred ceEEEEECCCCcEEEEEeCC-----------------CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc
Confidence 99999999887654332211 145678899999988887 5789999998877654443211
Q ss_pred -----------------------------------------------------------------CCeEEEEEeCCCCCE
Q 013436 270 -----------------------------------------------------------------SDVNTVCFGDESGHL 284 (443)
Q Consensus 270 -----------------------------------------------------------------~~v~~i~~~~~~~~~ 284 (443)
..+.+++|+ +++++
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~ 254 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN-PAKTR 254 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC-TTSSE
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEEC-CCCCE
Confidence 234468897 78888
Q ss_pred EEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 285 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
++++ ++.|.+||+. .++.+..+..+ ..+.+++|+|++++|++++.++.|++||+.+.
T Consensus 255 l~~~--~~~v~~~d~~----~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 255 AFGA--YNVLESFDLE----KNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEEE--ESEEEEEETT----TTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred EEEe--CCeEEEEECC----CCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 8887 7899999997 66776666533 46789999999999998888999999999884
No 160
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=1.3e-17 Score=152.85 Aligned_cols=211 Identities=13% Similarity=0.101 Sum_probs=144.9
Q ss_pred cCCCCceEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEeee--cCC-------ccceEEEEEECCCCCeEEEEECC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDIL--AKS-------LRWTVTDTSLSPDQRHLVYASMS 190 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~-~d~~i~iwd~~~~~~~~~~~~--~~~-------~~~~v~~i~~s~~~~~l~~~~~d 190 (443)
..+...+..++|+|||++|++++ .++.|.+|++........... ..+ ....+.+++|+|+++++++...+
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~ 161 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS 161 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence 44677889999999999988888 678999999963212211111 111 12348899999999955566668
Q ss_pred CeEEEEECC-CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEE-EecCCeEEEEECCC--Cee--eEE
Q 013436 191 PIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEA--NKL--SLR 264 (443)
Q Consensus 191 g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~--~~~--~~~ 264 (443)
+.|.+|++. +++......... . .......++|+|||+++++ +..++.|.+|++.. ++. +..
T Consensus 162 ~~v~~~~~~~~g~~~~~~~~~~-~------------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 228 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQSVLTM-E------------AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI 228 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEEC-C------------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEECCCCcEEEeeeEEc-C------------CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee
Confidence 899999998 444332211111 0 0114677999999996665 45678999999874 443 223
Q ss_pred eeccC------CCeEEEEEeCCCCCEE-EEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC-
Q 013436 265 ILAHT------SDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK- 336 (443)
Q Consensus 265 ~~~~~------~~v~~i~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~- 336 (443)
+.... ..+..++|+ +++++| ++...++.|.+||+.... ....+..+..+...+..++|+|+|++|++++.
T Consensus 229 ~~~~~~~~~~~~~~~~i~~s-pdG~~l~v~~~~~~~v~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 306 (347)
T 3hfq_A 229 VKTIPADYTAHNGAAAIRLS-HDGHFLYVSNRGYNTLAVFAVTADG-HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN 306 (347)
T ss_dssp EESSCTTCCSCCEEEEEEEC-TTSCEEEEEEETTTEEEEEEECGGG-CEEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred eeecCCCCCCCCcceeEEEC-CCCCEEEEEeCCCCEEEEEEECCCC-cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence 32222 348889998 778766 556678999999986221 22455556666667899999999998888776
Q ss_pred CCCEEEEeCC
Q 013436 337 DQAIKLWDIR 346 (443)
Q Consensus 337 dg~i~iwd~~ 346 (443)
++.|.+|++.
T Consensus 307 ~~~v~v~~~d 316 (347)
T 3hfq_A 307 TDNATLYARD 316 (347)
T ss_dssp TTEEEEEEEC
T ss_pred CCcEEEEEEe
Confidence 4899999554
No 161
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=6.9e-17 Score=146.89 Aligned_cols=253 Identities=11% Similarity=0.075 Sum_probs=175.5
Q ss_pred CCceEEEEECCCCCEEEEEECC------------------------CeEEEEECCCCeEEEEeeecCCccceEEEEEECC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQA------------------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~ 179 (443)
-+.+.+++++|+|+++++...+ +.|.+||..+++.+... ...+-..+..++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS--GKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE--CTTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc--CCCccCCceEEEECC
Confidence 4679999999999999888777 47999999888655432 223334588999999
Q ss_pred CCCeEEEEECCCeEEEEECCCCc-eeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEe-cCCeEEEEEC
Q 013436 180 DQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGS-SDDCIYVYDL 256 (443)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~-~dg~i~iwd~ 256 (443)
+++++++...++.|++|+..... ......... ..+ ...++-.....++++| ++.++++.+ .++.|++||
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~-~~g------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~- 172 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM-QPG------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS- 172 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTT-BCC------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccC-CCC------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence 99988888888999999986542 111110000 000 0012333688999999 788777776 689999999
Q ss_pred CCCeeeEEeecc----------CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec--CCCCCeEEEEE
Q 013436 257 EANKLSLRILAH----------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDS 324 (443)
Q Consensus 257 ~~~~~~~~~~~~----------~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~ 324 (443)
.+++.+..+... ......|++.|..++++++...++.|++||.. +++.+..+. .+...+..+++
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~----~G~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD----TKEFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT----TCCEEEEECCTTTTTCEEEEEE
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC----CCcEEEEEeccccCCCcceeee
Confidence 566666666422 23488999984448888888889999999996 577777763 45667889999
Q ss_pred CCCCCEEEEE-------eCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccc-eeee
Q 013436 325 RGDGRYLISN-------GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRT 396 (443)
Q Consensus 325 ~~~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 396 (443)
+| +..+++. ..+..|++||+.+ ++.+..+.... ....
T Consensus 249 ~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~----------------------------------g~~~~~~~~~~~~~~~ 293 (329)
T 3fvz_A 249 IP-GFLFAVNGKPYFGDQEPVQGFVMNFSS----------------------------------GEIIDVFKPVRKHFDM 293 (329)
T ss_dssp ET-TEEEEEECCCCTTCSCCCCEEEEETTT----------------------------------CCEEEEECCSSSCCSS
T ss_pred cC-CEEEEeCCCEEeccCCCcEEEEEEcCC----------------------------------CeEEEEEcCCCCccCC
Confidence 99 4333333 3355899999887 34444442111 1111
Q ss_pred eeEEEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 397 ~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
. ...+++|+|.++++...++.|++|++..
T Consensus 294 p----~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 294 P----HDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp E----EEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred e----eEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2 2334666898888889999999999864
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=180.94 Aligned_cols=205 Identities=13% Similarity=0.050 Sum_probs=141.0
Q ss_pred ceEEEEECCCCCEEEEEEC---------CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEE
Q 013436 126 RAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 196 (443)
.+.+++|||||++|++++. ++.|++||+.+++.+... .. ...+..++|||||+.|+++. ++.|++|
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~ 135 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGSKLAYVY-QNNIYLK 135 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTTCEEEEE-TTEEEEE
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCCEEEEEE-CCeEEEE
Confidence 3899999999999998876 689999999998542101 11 23488899999999999986 7899999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCcee---------cEEEEEEeCCCCEEEEEecCC------------------
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSF---------GIFSLKFSTDGRELVAGSSDD------------------ 249 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~l~~~~~~~~l~~~~~dg------------------ 249 (443)
++.+++...+.... .....+ .|+.. ...+++|+|||+.|++++.|.
T Consensus 136 ~~~~g~~~~l~~~~--~~~~v~-----~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~ 208 (719)
T 1z68_A 136 QRPGDPPFQITFNG--RENKIF-----NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPR 208 (719)
T ss_dssp SSTTSCCEECCCCC--BTTTEE-----ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCE
T ss_pred eCCCCCcEEEecCC--CcCCeE-----cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcc
Confidence 99888764432111 000000 01111 124799999999999987652
Q ss_pred ----------------eEEEEECCCCeee--EE------eeccCCCeEEEEEeCCCCCEEEEeeCC----CeEEEEe---
Q 013436 250 ----------------CIYVYDLEANKLS--LR------ILAHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWD--- 298 (443)
Q Consensus 250 ----------------~i~iwd~~~~~~~--~~------~~~~~~~v~~i~~~~~~~~~l~~~~~d----~~i~iwd--- 298 (443)
.|++||+.+++.. .. +..|...+..++|+ ++++++++.... ..|.+||
T Consensus 209 ~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-pD~~~~~~~~~~~~~~~~l~~~d~~~ 287 (719)
T 1z68_A 209 TINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV-TDERVCLQWLKRVQNVSVLSICDFRE 287 (719)
T ss_dssp EEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES-SSSEEEEEEEESSTTEEEEEEEEECS
T ss_pred ceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe-CCCeEEEEEeccccCeEEEEEEcccC
Confidence 7899999988753 12 23577789999998 567777764432 2488889
Q ss_pred -cccCCCCCceeeee----cCCCCCeE-----EEEECCCCCEEEE--EeCCCC--EEEEeCCC
Q 013436 299 -RRCLNVKGKPAGVL----MGHLEGIT-----FIDSRGDGRYLIS--NGKDQA--IKLWDIRK 347 (443)
Q Consensus 299 -~~~~~~~~~~~~~~----~~~~~~v~-----~~~~~~~~~~l~s--~~~dg~--i~iwd~~~ 347 (443)
.. .++....+ .+|...+. .+.|+|||+.|+. +..+|. |.+||+..
T Consensus 288 ~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~ 346 (719)
T 1z68_A 288 DWQ----TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV 346 (719)
T ss_dssp SSS----SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred CCC----CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence 65 44444444 36666666 7899999996543 445554 66666655
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=1.6e-17 Score=152.21 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=145.0
Q ss_pred ceEEEEECCCCCEEE-EEECCCeEEEEECCCCeEEEEeeecCCc---cceEEEEEECCCCCeEEEEECC-----------
Q 013436 126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLSPDQRHLVYASMS----------- 190 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~-~g~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~v~~i~~s~~~~~l~~~~~d----------- 190 (443)
.+..++|+|+|++++ ++..++.|.+||+.+++.+......... ...+..++|+|++++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 578899999998665 4456889999999998665543321110 2336789999999999998865
Q ss_pred -CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccC
Q 013436 191 -PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (443)
Q Consensus 191 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 269 (443)
+.|.+||+.+++......... +...+.+++|+|+|+ +++++. .|++||+.+++.+..+..+.
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~ 186 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP--------------MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRN 186 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE--------------CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTT
T ss_pred CCeEEEEECCCccccceeeecc--------------CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccc
Confidence 899999998765433222111 111577899999999 666543 49999999888766654321
Q ss_pred --------------------------------------------------------------------CCeEEEEEeCC-
Q 013436 270 --------------------------------------------------------------------SDVNTVCFGDE- 280 (443)
Q Consensus 270 --------------------------------------------------------------------~~v~~i~~~~~- 280 (443)
..+..++++ +
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~ 265 (349)
T 1jmx_B 187 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS-PK 265 (349)
T ss_dssp CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC-SS
T ss_pred cCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEec-CC
Confidence 134456676 5
Q ss_pred CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 281 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
++++++++ ++.|.+||+. +++.+..+.. ...+.+++|+|++++|++++.++.|++||+.+.
T Consensus 266 dg~~l~~~--~~~v~~~d~~----~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 266 DPNQIYGV--LNRLAKYDLK----QRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp CTTEEEEE--ESEEEEEETT----TTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred CCCEEEEE--cCeEEEEECc----cCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 88888887 8899999998 6777666653 345778999999998888888999999999883
No 164
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=3e-18 Score=168.59 Aligned_cols=201 Identities=10% Similarity=0.060 Sum_probs=146.2
Q ss_pred ccCCCccccCCC-CceEEEEECCCCCEEEEEEC---CCeEEEEECCC---CeEEEEeeecCCccceEEEEEECCCCCeE-
Q 013436 113 PVNGPWPVDQTT-SRAYVSQFSADGSLFVAGFQ---ASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQRHL- 184 (443)
Q Consensus 113 ~~~~~~~~~~h~-~~v~~~~~s~~~~~l~~g~~---d~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~i~~s~~~~~l- 184 (443)
.......+..|. ..+..++|||| ++++++.. +....||.+.. +... ....... +...+|+|+++.+
T Consensus 52 ~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~----~~~~~~s~dg~~~~ 125 (582)
T 3o4h_A 52 DGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKP----MRILSGVDTGEAVV 125 (582)
T ss_dssp ETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCS----BEEEEEEECSSCEE
T ss_pred cCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCC----ceeeeeCCCCCeEE
Confidence 334445555665 68999999999 77777765 44456654432 2222 2211222 3356888887643
Q ss_pred EEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC----CeEEEEECCCCe
Q 013436 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANK 260 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~ 260 (443)
++.+.++.+.+||+.+++...+... +..+++|+|||++|++++.+ +.|++||+.+++
T Consensus 126 ~~s~~~~~~~l~d~~~g~~~~l~~~-------------------~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~ 186 (582)
T 3o4h_A 126 FTGATEDRVALYALDGGGLRELARL-------------------PGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG 186 (582)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEE-------------------SSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC
T ss_pred EEecCCCCceEEEccCCcEEEeecC-------------------CCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC
Confidence 3344445566999988865443321 11678999999999988877 789999999887
Q ss_pred eeEEeeccCCCeEEEEEeCCCCCEEEEeeCCC--eEEEEecccCCCCCceeeeecCCCCCeEEEE--------ECCCCCE
Q 013436 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFID--------SRGDGRY 330 (443)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~ 330 (443)
.. .+..|...+..++|+ |+|+.|+++..++ .|++||+. .++.. .+.+|...+..++ |+|||.+
T Consensus 187 ~~-~l~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~i~~~d~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~ 259 (582)
T 3o4h_A 187 LR-VFDSGEGSFSSASIS-PGMKVTAGLETAREARLVTVDPR----DGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRL 259 (582)
T ss_dssp CE-EECCSSCEEEEEEEC-TTSCEEEEEECSSCEEEEEECTT----TCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCE
T ss_pred ce-EeecCCCccccceEC-CCCCEEEEccCCCeeEEEEEcCC----CCcEE-EccCCCcChhhhhhccccceeEcCCCcE
Confidence 54 677888889999998 8999999888888 89999997 66666 6777777777677 9999988
Q ss_pred EEEEeCCCCEEEEeC
Q 013436 331 LISNGKDQAIKLWDI 345 (443)
Q Consensus 331 l~s~~~dg~i~iwd~ 345 (443)
+++++.|+.+++|++
T Consensus 260 ~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 260 AVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEETTEEEEEET
T ss_pred EEEEEcCCcEEEEEE
Confidence 899999999999998
No 165
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=4.4e-16 Score=156.68 Aligned_cols=248 Identities=13% Similarity=0.146 Sum_probs=165.4
Q ss_pred CCCCceEEEEECCCCCEEEEEECCC-----eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCe----
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---- 192 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~---- 192 (443)
+|...+..++|||||++||.+..++ .|++||+.+++.+..... . ..+..++|+||++.|++++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--~--~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--R--VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--E--ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--C--cccceEEEEeCCCEEEEEEECCccccc
Confidence 3555789999999999999876543 899999999966543221 1 12567999999999999988765
Q ss_pred ------------EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-----CCeEEEEE
Q 013436 193 ------------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYD 255 (443)
Q Consensus 193 ------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-----dg~i~iwd 255 (443)
|++|++.++.......... ..+...+..+.|+|||++|+.++. +..|++||
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEF------------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECC------------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred cccccccCCCCEEEEEECCCCcccceEEecc------------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence 9999998775321111010 012224778999999999988765 56899999
Q ss_pred CCC------Ce-eeEEeeccCCCeEEEEEeCCCCCEEEEeeC----CCeEEEEecccCCCCCc--eeeeecCCCC--CeE
Q 013436 256 LEA------NK-LSLRILAHTSDVNTVCFGDESGHLIYSGSD----DNLCKVWDRRCLNVKGK--PAGVLMGHLE--GIT 320 (443)
Q Consensus 256 ~~~------~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~--~~~~~~~~~~--~v~ 320 (443)
+.+ +. ....+..+...+.. .|+ +++..|+..+. ++.|.+||+. .+. ....+..|.. .+.
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFT----DPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETT----SCCGGGCEEEECCCSSCEEE
T ss_pred CcccccccCCccceEEeeCCCCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCC----CCCcccceeccCCCCCCeEE
Confidence 986 43 35666666666655 466 55665555544 2369999987 332 2344444544 678
Q ss_pred EEEECCCCCEEEEEeCCCC--EEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeee
Q 013436 321 FIDSRGDGRYLISNGKDQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (443)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (443)
.++|++++.++++...|+. |.+||+.+ ++.+..+..+. ..+.
T Consensus 340 ~~~~~~~~~lv~~~~~~g~~~l~~~~~~~----------------------------------g~~~~~l~~~~--~~v~ 383 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLHDVKNTLQLHDLAT----------------------------------GALLKIFPLEV--GSVV 383 (710)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTT----------------------------------CCEEEEECCCS--SEEE
T ss_pred EEEEEcCCEEEEEEEECCEEEEEEEECCC----------------------------------CCEEEecCCCC--ceEE
Confidence 8999977778888888875 55667644 23344555442 2222
Q ss_pred EEEecCCccCCccEEEEe-e---CCCeEEEEEccChh
Q 013436 399 RCHFSPVYSTGQKYIYTG-S---HDSCVYVYDLVSIQ 431 (443)
Q Consensus 399 ~~~~~~~~s~d~~~l~tg-~---~dg~v~iwd~~~g~ 431 (443)
. ..++|+++.++.. + ..+.|+.||+.+++
T Consensus 384 ~----~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 384 G----YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp E----EECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred E----EecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2 2355677655533 2 35899999999887
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=2.8e-16 Score=156.97 Aligned_cols=211 Identities=11% Similarity=0.054 Sum_probs=143.1
Q ss_pred cccCCCccccCCCCceE---------EEEEC--CCCCE-EEEEEC-CCeEEEEECC--C-CeEEEEeeecC--CccceEE
Q 013436 112 LPVNGPWPVDQTTSRAY---------VSQFS--ADGSL-FVAGFQ-ASQIRIYDVE--R-GWKIQKDILAK--SLRWTVT 173 (443)
Q Consensus 112 ~~~~~~~~~~~h~~~v~---------~~~~s--~~~~~-l~~g~~-d~~i~iwd~~--~-~~~~~~~~~~~--~~~~~v~ 173 (443)
........+..|...+. ...|+ |||++ |+.+.. +..|.++++. + +. ........ .+...+.
T Consensus 55 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~ 133 (662)
T 3azo_A 55 RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWA 133 (662)
T ss_dssp CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEE
T ss_pred CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCcccc
Confidence 33444555666665555 55565 99998 776654 5567777776 3 42 22211110 1566789
Q ss_pred EEEECCCCCeEEEEECC----------CeEEEEECCC------CceeccccceecccCceeeccCCCCceecEEEEEEeC
Q 013436 174 DTSLSPDQRHLVYASMS----------PIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST 237 (443)
Q Consensus 174 ~i~~s~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 237 (443)
.++|+|||+.|++++.+ ..|++||+.+ ++...+.. . +...+..++|+|
T Consensus 134 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--~--------------~~~~~~~~~~Sp 197 (662)
T 3azo_A 134 DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD--D--------------AHRFVTGPRLSP 197 (662)
T ss_dssp EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC--S--------------CSSEECCCEECT
T ss_pred CcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe--c--------------CCCcccCceECC
Confidence 99999999999998876 5899999987 44432220 0 112567789999
Q ss_pred CCCEEEEEecC--------CeEEEEECC-CC---eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCC--eEEEEecccCC
Q 013436 238 DGRELVAGSSD--------DCIYVYDLE-AN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRRCLN 303 (443)
Q Consensus 238 ~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~--~i~iwd~~~~~ 303 (443)
||++|+.++.+ ..|++||+. ++ +.......+...+..+.|+ +++++++++..++ .|.+||+.
T Consensus 198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s-pdg~l~~~~~~~~~~~l~~~~~~--- 273 (662)
T 3azo_A 198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA-PDGSLIVATDRTGWWNLHRVDPA--- 273 (662)
T ss_dssp TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC-TTSCEEEEECTTSSCEEEEECTT---
T ss_pred CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC-CCCeEEEEECCCCCeEEEEEECC---
Confidence 99999988755 379999998 56 4433444557889999998 7777888888888 56666654
Q ss_pred CCCceeeeecCCCCC--------eEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 304 VKGKPAGVLMGHLEG--------ITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 304 ~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
.++.......+... +..++|+|+++++++++. +.++||.+
T Consensus 274 -~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 274 -TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp -TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred -CCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 34433333322221 567889999999999998 99999944
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=1.7e-17 Score=154.90 Aligned_cols=211 Identities=13% Similarity=0.018 Sum_probs=134.2
Q ss_pred eEEEEECCCCCEEEEEECC---CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 127 AYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
+..++|||||++|+..... ..|.+||+.+++... . ...+......+.|+||++.|++++.++.|++||+.+++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l--~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-L--TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-C--CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-e--ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 6778999999998877553 368899999885432 1 222222223378999999999999999999999998875
Q ss_pred eccccceec--ccCceeeccCCCCcee--cEEEEEEeCCCCEEEEE-----ecCCeEEEEECCCCeeeEEeeccCCCeEE
Q 013436 204 ESLANVTEI--HDGLDFSAADDGGYSF--GIFSLKFSTDGRELVAG-----SSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (443)
Q Consensus 204 ~~~~~~~~~--~~~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 274 (443)
..+...... ..+..+.... ..... ....+.|+|+++.++.+ ..+..|++||+.+++..... .+...+..
T Consensus 115 ~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~ 192 (396)
T 3c5m_A 115 QVIYTVDEEWKGYGTWVANSD-CTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGH 192 (396)
T ss_dssp EEEEECCTTEEEEEEEEECTT-SSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEE
T ss_pred EEEEecccccCCCCCEEEecc-CCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccccc
Confidence 443321110 0000000000 00000 00013568888877654 35678999999988754443 56778999
Q ss_pred EEEeCCCCCEEEEeeCC------CeEEEEecccCCCCCceeeeecCC--CCCeEEEEECCCCCEEEEEeCC-----CCEE
Q 013436 275 VCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKD-----QAIK 341 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d-----g~i~ 341 (443)
+.|+|.++..|+..+.+ ..|.+||+. .+. ...+..+ ...+..++|+|+|++|+..+.+ +.|+
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~----~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNED----GSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEETTEEEEEEEEECSCSSSCSCCCEEEETT----SCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred ceECCCCCCEEEEEecCCCCCCCceEEEEECC----CCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 99984367766665543 368888875 332 2333333 2357889999999988776543 3499
Q ss_pred EEeCCC
Q 013436 342 LWDIRK 347 (443)
Q Consensus 342 iwd~~~ 347 (443)
+||+.+
T Consensus 268 ~~d~~~ 273 (396)
T 3c5m_A 268 KANPET 273 (396)
T ss_dssp EECTTT
T ss_pred EEECCC
Confidence 999977
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=9.4e-17 Score=162.27 Aligned_cols=304 Identities=13% Similarity=0.081 Sum_probs=179.4
Q ss_pred eecccccCCCccccCCCCc-----eEEEEECCCCCEEEEEECC---------CeEEEEECCCCeEEEEeeecCCccceEE
Q 013436 108 LSRYLPVNGPWPVDQTTSR-----AYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVT 173 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~-----v~~~~~s~~~~~l~~g~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 173 (443)
++.....+....+.+|... ...++|||||++|+.++.+ +.+.+||+.+++.. ....+...+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~ 115 (740)
T 4a5s_A 40 VFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQ 115 (740)
T ss_dssp EEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEE
T ss_pred EEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcce
Confidence 4443333433444555432 3447899999999998876 56779999998533 2445556799
Q ss_pred EEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCce---------ecEEEEEEeCCCCEEEE
Q 013436 174 DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS---------FGIFSLKFSTDGRELVA 244 (443)
Q Consensus 174 ~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~l~~~~~~~~l~~ 244 (443)
..+|||||+.||.+. ++.|++|++.++....+..... ....+. ++. .....+.|||||+.|+.
T Consensus 116 ~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~--~~~~~~-----g~~~~v~~ee~~~~~~~~~wSpDg~~la~ 187 (740)
T 4a5s_A 116 WVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGK--EDIIYN-----GITDWVYEEEVFSAYSALWWSPNGTFLAY 187 (740)
T ss_dssp EEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCB--TTTEEE-----SBCCHHHHHHTSSSSBCEEECTTSSEEEE
T ss_pred eeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCC--ccceec-----CcccccccchhcCCCcceEECCCCCEEEE
Confidence 999999999999884 6899999998887554322111 000000 010 12235899999999998
Q ss_pred EecCC------------------------------------eEEEEECCC---Ce--eeEEee------ccCCCeEEEEE
Q 013436 245 GSSDD------------------------------------CIYVYDLEA---NK--LSLRIL------AHTSDVNTVCF 277 (443)
Q Consensus 245 ~~~dg------------------------------------~i~iwd~~~---~~--~~~~~~------~~~~~v~~i~~ 277 (443)
++.|. .|++||+.+ ++ ....+. +|...+..++|
T Consensus 188 ~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w 267 (740)
T 4a5s_A 188 AQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTW 267 (740)
T ss_dssp EEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEE
T ss_pred EEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEE
Confidence 75321 588999988 73 233343 26777999999
Q ss_pred eCCCCCEEEEeeC----CCeEEEEecccCCCCCc----e--eeee--cCCCCCeE-----EEEECCCCCEEE-EEeC-CC
Q 013436 278 GDESGHLIYSGSD----DNLCKVWDRRCLNVKGK----P--AGVL--MGHLEGIT-----FIDSRGDGRYLI-SNGK-DQ 338 (443)
Q Consensus 278 ~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~----~--~~~~--~~~~~~v~-----~~~~~~~~~~l~-s~~~-dg 338 (443)
+ +++++++.... +..|.+||+. +++ + +..+ .+|...|. .++|+|||+.|+ ..+. +|
T Consensus 268 s-pdg~~~~~~~~r~~~~~~i~~~d~~----tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G 342 (740)
T 4a5s_A 268 A-TQERISLQWLRRIQNYSVMDICDYD----ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG 342 (740)
T ss_dssp E-ETTEEEEEEEESSTTEEEEEEEEEE----TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred e-CCCeEEEEEeCCCCCEEEEEEEECC----CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC
Confidence 8 67776665432 3479999998 444 1 1222 34555444 688999999877 5553 44
Q ss_pred --CEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccC-------CCCeeEEEEeccceeee-ee--------EE
Q 013436 339 --AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-------PCDQSVATYKGHSVLRT-LI--------RC 400 (443)
Q Consensus 339 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~--------~~ 400 (443)
.|++||+.......... ..|++..+........+.. +....+........... .+ ..
T Consensus 343 ~~~l~~~~~~~~~~~~lT~-----g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~ 417 (740)
T 4a5s_A 343 YRHICYFQIDKKDCTFITK-----GTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQ 417 (740)
T ss_dssp CEEEEEEETTCSSCEESCC-----SSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBC
T ss_pred ceEEEEEECCCCceEeccc-----CCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCc
Confidence 58888887654332211 1232222111111111111 12233333322111110 11 12
Q ss_pred EecCCccCCccEEEEeeCC---CeEEEEEccChhhh
Q 013436 401 HFSPVYSTGQKYIYTGSHD---SCVYVYDLVSIQIL 433 (443)
Q Consensus 401 ~~~~~~s~d~~~l~tg~~d---g~v~iwd~~~g~~~ 433 (443)
.+.+.|||++++++..... ..+.+++..+++.+
T Consensus 418 ~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~ 453 (740)
T 4a5s_A 418 YYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGL 453 (740)
T ss_dssp BEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred eEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 3456788899987655433 46888888877643
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=1.6e-16 Score=147.94 Aligned_cols=204 Identities=9% Similarity=-0.007 Sum_probs=133.8
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEE--EECCCCCeEEEEE-------
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT--SLSPDQRHLVYAS------- 188 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i--~~s~~~~~l~~~~------- 188 (443)
....++...+..++|+|||+.|+.+..++.|++||+.+++..... . .+...+... .++|++++++...
T Consensus 74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-~--~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 150 (388)
T 3pe7_A 74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-Q--VPAEWVGYGTWVANSDCTKLVGIEIRREDWV 150 (388)
T ss_dssp ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-E--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-e--chhhcccccceeECCCCCeeccccccCcccc
Confidence 344555556667889999999999999999999999998654322 1 222234333 4589999887432
Q ss_pred ---------------CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecC----
Q 013436 189 ---------------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSD---- 248 (443)
Q Consensus 189 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d---- 248 (443)
.+..|.+||+.+++...+.. +...+..++|+| ||+.|+....+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-----------------~~~~~~~~~~sp~dg~~l~~~~~~~~~~ 213 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-----------------ENQWLGHPIYRPYDDSTVAFCHEGPHDL 213 (388)
T ss_dssp CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-----------------ESSCEEEEEEETTEEEEEEEEECSCTTT
T ss_pred cccccchhhhhhccCCcceEEEEECCCCceEEeec-----------------CCccccccEECCCCCCEEEEEEecCCCC
Confidence 34689999999887544332 112578899999 99988887753
Q ss_pred --CeEEEEECCCCeeeEEeeccC--CCeEEEEEeCCCCCEEEEee-CCC----eEEEEecccCCCCCce--eeeecCCCC
Q 013436 249 --DCIYVYDLEANKLSLRILAHT--SDVNTVCFGDESGHLIYSGS-DDN----LCKVWDRRCLNVKGKP--AGVLMGHLE 317 (443)
Q Consensus 249 --g~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~~~-~d~----~i~iwd~~~~~~~~~~--~~~~~~~~~ 317 (443)
..|+++|+..++. ..+..+. ..+..+.|+ ++++.|+..+ .++ .|.+||+. .++. +..+.++..
T Consensus 214 ~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~~d~~----~g~~~~l~~~~~~~~ 287 (388)
T 3pe7_A 214 VDARMWLINEDGTNM-RKVKTHAEGESCTHEFWV-PDGSALVYVSYLKGSPDRFIYSADPE----TLENRQLTSMPACSH 287 (388)
T ss_dssp SSCSEEEEETTSCCC-EESCCCCTTEEEEEEEEC-TTSSCEEEEEEETTCCCEEEEEECTT----TCCEEEEEEECCEEE
T ss_pred CcceEEEEeCCCCce-EEeeeCCCCcccccceEC-CCCCEEEEEecCCCCCcceEEEEecC----CCceEEEEcCCCcee
Confidence 3788889876553 4444444 357788998 7777664433 222 39999997 4442 333332110
Q ss_pred C---eEEEEECCCCCEEEEE---------eCCCCEEEEeCCC
Q 013436 318 G---ITFIDSRGDGRYLISN---------GKDQAIKLWDIRK 347 (443)
Q Consensus 318 ~---v~~~~~~~~~~~l~s~---------~~dg~i~iwd~~~ 347 (443)
. ...+.|+|||+.|+.. ..+..|++||+.+
T Consensus 288 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 288 LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp EEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 0 1123689999988754 4466899999987
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=4.7e-16 Score=143.57 Aligned_cols=190 Identities=14% Similarity=0.107 Sum_probs=125.2
Q ss_pred EEEEEECC--CeEEEEEC--CCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECC-CCceeccccceec
Q 013436 138 LFVAGFQA--SQIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG-SGTMESLANVTEI 212 (443)
Q Consensus 138 ~l~~g~~d--~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~ 212 (443)
++++|+.. +.|.+|++ .++...............+..++|+|++++|++++.+ .|.+|++. +++.........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~- 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI- 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-
Confidence 35556543 46887765 4553322111111222347789999999999998888 99999997 665432211110
Q ss_pred ccCceeeccCCCCceecEEEEEEeCCCCE--EEEEe-------------cCCeEEEEECC-CCeeeEEee----ccCCCe
Q 013436 213 HDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGS-------------SDDCIYVYDLE-ANKLSLRIL----AHTSDV 272 (443)
Q Consensus 213 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~--l~~~~-------------~dg~i~iwd~~-~~~~~~~~~----~~~~~v 272 (443)
. + ....++|+|+|++ +++++ .+|.+.+|++. .++....+. .+...+
T Consensus 82 -~----------g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~ 147 (365)
T 1jof_A 82 -G----------G---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI 147 (365)
T ss_dssp -C----------S---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE
T ss_pred -C----------C---CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcc
Confidence 0 0 1234789999994 44553 68999999997 455444433 245678
Q ss_pred EEEEEeCCCCCEEEEee-CCCeEEEEecccCCCCCc--eeeeec--CCCCCeEEEEECCCCCEEEEEeC-CCCEEEEeCC
Q 013436 273 NTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGK--PAGVLM--GHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIR 346 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~--~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~ 346 (443)
.+++|+ +++++++++. .++.|.+||+.. .++ .+..+. .|...+..++|+|+|++|++++. ++.|.+|++.
T Consensus 148 ~~~~~s-pdG~~l~~~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 148 HGMVFD-PTETYLYSADLTANKLWTHRKLA---SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EEEEEC-TTSSEEEEEETTTTEEEEEEECT---TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEC-CCCCEEEEEcCCCCEEEEEEECC---CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 999998 7888777765 467999999962 122 223333 24567899999999999887775 7899999875
Q ss_pred C
Q 013436 347 K 347 (443)
Q Consensus 347 ~ 347 (443)
.
T Consensus 224 ~ 224 (365)
T 1jof_A 224 P 224 (365)
T ss_dssp T
T ss_pred C
Confidence 3
No 171
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.74 E-value=1.3e-15 Score=140.31 Aligned_cols=209 Identities=10% Similarity=0.126 Sum_probs=139.8
Q ss_pred CCCCceEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEeee---c--------CCccceEEEEEECCCCCeEEEEE-
Q 013436 122 QTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDIL---A--------KSLRWTVTDTSLSPDQRHLVYAS- 188 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~-~d~~i~iwd~~~~~~~~~~~~---~--------~~~~~~v~~i~~s~~~~~l~~~~- 188 (443)
.+......+++ ++++|+++. .++.|.+|++.....+..... . ..+...+.+++|+|++++|++++
T Consensus 97 ~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 174 (361)
T 3scy_A 97 TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL 174 (361)
T ss_dssp CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET
T ss_pred cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC
Confidence 34556777888 888777776 578999999975432221110 0 11123368899999999777665
Q ss_pred CCCeEEEEECCCCce------eccc---cceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe-cCCeEEEEECCC
Q 013436 189 MSPIVHIVDVGSGTM------ESLA---NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA 258 (443)
Q Consensus 189 ~dg~i~iwd~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~ 258 (443)
.++.|.+|++..... .... ..... .+......++|+|+|+++++++ .++.|.+||+.+
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKV------------APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC------------CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceec------------CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence 478999999876542 1000 00000 0112567899999999887777 589999999987
Q ss_pred Cee--eEEee---ccCCCeEEEEEeCCCCCEEEEeeC--CCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEE
Q 013436 259 NKL--SLRIL---AHTSDVNTVCFGDESGHLIYSGSD--DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331 (443)
Q Consensus 259 ~~~--~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 331 (443)
++. +..+. .+...+..++|+ +++++|+++.. ++.|.+|++.........+..+.. ...+..++|+|+|++|
T Consensus 243 g~~~~~~~~~~~~~~~~~~~~i~~s-pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l 320 (361)
T 3scy_A 243 GMLDEIQTVAADTVNAQGSGDIHLS-PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYL 320 (361)
T ss_dssp TEEEEEEEEESCSSCCCCEEEEEEC-TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred CceEEeEEEecCCCCCCCcccEEEC-CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEE
Confidence 754 22232 233456799998 88888866665 489999998522112224444444 4577899999999988
Q ss_pred EEEe-CCCCEEEEeCC
Q 013436 332 ISNG-KDQAIKLWDIR 346 (443)
Q Consensus 332 ~s~~-~dg~i~iwd~~ 346 (443)
++++ .++.|.+|++.
T Consensus 321 ~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 321 LVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEECCCCCEEEEEEE
Confidence 8887 57899997654
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=2.6e-16 Score=157.25 Aligned_cols=210 Identities=14% Similarity=0.081 Sum_probs=144.3
Q ss_pred ccccCCCCceEEEEECCCCCEEEEE--ECCCeEEEEECCCCeEEEEeeecCCccceEE---------EEEEC--CCCCe-
Q 013436 118 WPVDQTTSRAYVSQFSADGSLFVAG--FQASQIRIYDVERGWKIQKDILAKSLRWTVT---------DTSLS--PDQRH- 183 (443)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~g--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~---------~i~~s--~~~~~- 183 (443)
..+.+|...+..++|++++-+++.. ..++...||....+..... ...+...+. ...|+ ||++.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES---ALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE---SSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce---eCCCCccccccccccCCccceeeeecCCCeE
Confidence 3466788999999999887667766 4578899998544433332 223333344 45555 99998
Q ss_pred EEEEEC-CCeEEEEECC--C-CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC----------C
Q 013436 184 LVYASM-SPIVHIVDVG--S-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----------D 249 (443)
Q Consensus 184 l~~~~~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----------g 249 (443)
|+.++. +..|.++++. + +....+.... ...|...+..++|+|||+.|++++.+ .
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCC------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCc------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 777654 5567777765 3 4332222110 00134478899999999999998876 5
Q ss_pred eEEEEECCC------CeeeEEee-ccCCCeEEEEEeCCCCCEEEEeeCC--------CeEEEEecccCCCCC---ceeee
Q 013436 250 CIYVYDLEA------NKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKG---KPAGV 311 (443)
Q Consensus 250 ~i~iwd~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~---~~~~~ 311 (443)
.|++||+.+ ++ ...+. .+...+..++|+ ++|++|+.++.+ ..|.+||+.. .+ +....
T Consensus 162 ~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~~---~g~~~~~~~l 236 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVTE---DGRFADTRTL 236 (662)
T ss_dssp EEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEECT---TSCEEEEEEE
T ss_pred EEEEEECCCCccccCCc-eeEEEecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEECC---CCcccccEEe
Confidence 899999988 54 45555 566778889998 889988877754 3799999861 13 33334
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCC--EEEEeCCC
Q 013436 312 LMGHLEGITFIDSRGDGRYLISNGKDQA--IKLWDIRK 347 (443)
Q Consensus 312 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~--i~iwd~~~ 347 (443)
..+|...+..++|+|||++++++..++. |.+||+.+
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence 4456788999999999998888888884 55555544
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=6.8e-16 Score=141.98 Aligned_cols=243 Identities=15% Similarity=0.079 Sum_probs=161.6
Q ss_pred EEEECCCCCEEEEEEC----------CCeEEEEECCCCeEEEEeeecCC---ccceEEEEEECCCCCeEEEEEC--CCeE
Q 013436 129 VSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKS---LRWTVTDTSLSPDQRHLVYASM--SPIV 193 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~~----------d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~~~~~--dg~i 193 (443)
.++|+|||++++++.. ++.|.+||..+++.+........ +......++++|||++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 8999999999998863 56799999998877665543321 1223567899999999998874 5799
Q ss_pred EEEECCCCceecc-ccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCC-CeeeEEe-----
Q 013436 194 HIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEA-NKLSLRI----- 265 (443)
Q Consensus 194 ~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~----- 265 (443)
.+||+.+++.... .... ....+.+.|++ ..+++.+.||.+.+|++.. ++.....
T Consensus 134 ~v~d~~~~~~~~~~i~~~------------------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~ 195 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAA------------------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM 195 (361)
T ss_dssp EEEETTTTEEEEEEGGGT------------------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred EEEECCCCcEEEEEecCC------------------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence 9999998876443 2211 22235567765 6778888899999998865 4443221
Q ss_pred -eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC------C----CCCeEEEEECCCCCEEEEE
Q 013436 266 -LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG------H----LEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 266 -~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~----~~~v~~~~~~~~~~~l~s~ 334 (443)
.....++ .+.++ +++..++..+.++.|.++|+.... ......+.- + ......++++|+++.++++
T Consensus 196 ~~~~~~~~-~~~~~-~~g~~~~~~~~~~~v~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~ 271 (361)
T 2oiz_A 196 FSVKDDPI-FIAPA-LDKDKAHFVSYYGNVYSADFSGDE--VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVF 271 (361)
T ss_dssp SCTTTSCB-CSCCE-ECSSEEEEEBTTSEEEEEECSSSS--CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEE
T ss_pred EcCCCCce-EEEec-ccCCEEEEEeCCCeEEEEEecCCC--ceecccccccCccccccccccCCeeEEEEecCCCeEEEE
Confidence 1112222 22233 445566667788999999986211 111111110 0 0111236899998877765
Q ss_pred eC-----------CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEec
Q 013436 335 GK-----------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (443)
Q Consensus 335 ~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (443)
.. .+.|.+||+.+ .+.+..+..+. . ++
T Consensus 272 ~~~~~~~~~~~~~~~~v~viD~~t----------------------------------~~~v~~i~~~~----p----~~ 309 (361)
T 2oiz_A 272 MHPDGKEGTHKFPAAEIWVMDTKT----------------------------------KQRVARIPGRD----A----LS 309 (361)
T ss_dssp EESSCCTTCTTCCCSEEEEEETTT----------------------------------TEEEEEEECTT----C----CE
T ss_pred EccCCCcccccCCCceEEEEECCC----------------------------------CcEEEEEecCC----e----eE
Confidence 42 34799999988 56677777665 2 23
Q ss_pred CCccCCccEEEEeeCCCeEEEEEccCh--hhhhHh
Q 013436 404 PVYSTGQKYIYTGSHDSCVYVYDLVSI--QILFCR 436 (443)
Q Consensus 404 ~~~s~d~~~l~tg~~dg~v~iwd~~~g--~~~~~~ 436 (443)
..|+|||++|++++. +.|.+||..++ +++..+
T Consensus 310 ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 310 MTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred EEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 346679999999887 99999999999 877654
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=6.3e-15 Score=131.81 Aligned_cols=250 Identities=9% Similarity=0.070 Sum_probs=172.7
Q ss_pred CCccccCCCCceEEEEECCCCC-EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~-~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
....+..+.....+++|+|+|+ +++++..++.|..|+..++ .... ..+...+.+++++|+++++++...++.|.
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~---~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE---MHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE---ESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE---ECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 3445555666788999999998 7888888999999999987 3222 12345689999999999877776778999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEE----Ee-------------cCCeEEEEECC
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GS-------------SDDCIYVYDLE 257 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~----~~-------------~dg~i~iwd~~ 257 (443)
+||..+++.......... .....+..++++|+|+++++ |+ ..+.|+.++..
T Consensus 94 ~~d~~~g~~~~~~~~~~~------------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEG------------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EECSTTCCEEEEECEETT------------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEcCCCCcEEEEeeccCC------------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 999988775433221100 01114667999999998887 33 13567777765
Q ss_pred CCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCce---eeeecCCCCCeEEEEECCCCCEEEEE
Q 013436 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP---AGVLMGHLEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 258 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~ 334 (443)
++ +..+..+......++|+ ++++.+++.+.++.|.+||+.. .+.. ...+..+...+..++++++|+++++.
T Consensus 162 -g~-~~~~~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 162 -GT-LSAPIRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNA---RGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp -SC-EEEEECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECS---SSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred -CC-EEEeecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECC---CCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence 44 34445666778999997 7888777778889999999861 2222 22333345567789999999977766
Q ss_pred eCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEE
Q 013436 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (443)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 414 (443)
++.|.+||... +.+..+..+.. ...+.|. +|+++.|+
T Consensus 236 --~~~v~~~~~~g-----------------------------------~~~~~~~~~~~---~~~~~f~---~~d~~~L~ 272 (296)
T 3e5z_A 236 --GDGVHVLTPDG-----------------------------------DELGRVLTPQT---TSNLCFG---GPEGRTLY 272 (296)
T ss_dssp --TTEEEEECTTS-----------------------------------CEEEEEECSSC---CCEEEEE---STTSCEEE
T ss_pred --CCeEEEECCCC-----------------------------------CEEEEEECCCC---ceeEEEE---CCCCCEEE
Confidence 78899999753 34555655543 3334443 45889899
Q ss_pred EeeCCCeEEEEEccChhh
Q 013436 415 TGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 415 tg~~dg~v~iwd~~~g~~ 432 (443)
+++.++ +.-++..+.++
T Consensus 273 v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 273 MTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEETTE-EEEEECSCCBC
T ss_pred EEcCCe-EEEEEcccccc
Confidence 888764 66667766654
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=2.1e-14 Score=130.74 Aligned_cols=207 Identities=12% Similarity=0.094 Sum_probs=145.3
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC----Ce
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PI 192 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d----g~ 192 (443)
...+..+...+.+++|+|+|++++++..++.|.+||..++...... ..+...+.+++++|+++++++...+ +.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---VSHKANPAAIKIHKDGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE---ECSSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe---eCCCCCcceEEECCCCcEEEEeCCCCCCCce
Confidence 3345566677899999999998888888899999999887543321 1234569999999999877776666 68
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec------CCeEEEEECCCCeeeEEee
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRIL 266 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~ 266 (443)
|.+||..++......... .+...+.+++++|+|+++++... .+.|+.+|..+++.. .+.
T Consensus 114 i~~~d~~~~~~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 178 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDL--------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PII 178 (333)
T ss_dssp EEEECTTSCSCEEEECSS--------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEE
T ss_pred EEEEeCCCCEEEEEEccC--------------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-Eee
Confidence 999998877654221100 01226889999999987776653 356788887665543 333
Q ss_pred ccCCCeEEEEEeCCCCCEE-EEeeCCCeEEEEecccCCCCCceee--------eecCCCCCeEEEEECCCCCEEEEEeCC
Q 013436 267 AHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAG--------VLMGHLEGITFIDSRGDGRYLISNGKD 337 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~s~~~d 337 (443)
.....+..++|+ ++++.+ ++.+.++.|.+||+... +..+. .+.++ ..+..++++++|+++++...+
T Consensus 179 ~~~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~~---g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~ 253 (333)
T 2dg1_A 179 QNISVANGIALS-TDEKVLWVTETTANRLHRIALEDD---GVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQ 253 (333)
T ss_dssp EEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTT---SSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETT
T ss_pred cCCCcccceEEC-CCCCEEEEEeCCCCeEEEEEecCC---CcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCC
Confidence 344567899997 777755 45556789999998621 12111 12222 467889999999988888888
Q ss_pred CCEEEEeCC
Q 013436 338 QAIKLWDIR 346 (443)
Q Consensus 338 g~i~iwd~~ 346 (443)
+.|.+||..
T Consensus 254 ~~v~~~d~~ 262 (333)
T 2dg1_A 254 GRVLVFNKR 262 (333)
T ss_dssp TEEEEECTT
T ss_pred CEEEEECCC
Confidence 899999974
No 176
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.71 E-value=5.6e-16 Score=155.44 Aligned_cols=250 Identities=11% Similarity=0.025 Sum_probs=163.0
Q ss_pred CCCCceEEEEECCCCCEEEEE-----ECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCe----
Q 013436 122 QTTSRAYVSQFSADGSLFVAG-----FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---- 192 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~---- 192 (443)
+|...+..++|||||++||.+ +.+..|++||+.+++.+.. ...... ....++|+|||+.|++++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence 566679999999999999943 3346899999999854311 011111 1257899999999999998776
Q ss_pred ---------EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC----eEEEEECCCC
Q 013436 193 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEAN 259 (443)
Q Consensus 193 ---------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg----~i~iwd~~~~ 259 (443)
|++|++.++......... ..++...+..+.|+|||++|+.++.++ .|++||..++
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~------------~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~ 262 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHE------------RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK 262 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEEC------------CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEe------------cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC
Confidence 999999887632111100 011223678899999999998887766 7888877665
Q ss_pred eeeEEeeccCCCeEEEEEeCCCCCEEEEee---CCCeEEEEecccCCCCCce--eeeecCC--CCCeEEEEECCCCCEEE
Q 013436 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKP--AGVLMGH--LEGITFIDSRGDGRYLI 332 (443)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~ 332 (443)
+ ...+..+...+....+. .++ +++.+. .++.|.+||+. .+.. ...+..+ ...+..++|+ ++.+++
T Consensus 263 ~-~~~l~~~~~~~~~~~~~-~g~-l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~ 334 (695)
T 2bkl_A 263 D-FRLLVKGVGAKYEVHAW-KDR-FYVLTDEGAPRQRVFEVDPA----KPARASWKEIVPEDSSASLLSVSIV-GGHLSL 334 (695)
T ss_dssp S-CEEEEECSSCCEEEEEE-TTE-EEEEECTTCTTCEEEEEBTT----BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEE
T ss_pred c-eEEeecCCCceEEEEec-CCc-EEEEECCCCCCCEEEEEeCC----CCCccCCeEEecCCCCCeEEEEEEE-CCEEEE
Confidence 4 44555666666777673 444 555544 35789999986 3332 2333333 4457888888 677888
Q ss_pred EEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccE
Q 013436 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (443)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 412 (443)
+...|+..+||.+... +..+..+..+.. ..+....++|+++.
T Consensus 335 ~~~~dg~~~l~~~~~~---------------------------------g~~~~~l~~~~~-----~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 335 EYLKDATSEVRVATLK---------------------------------GKPVRTVQLPGV-----GAASNLMGLEDLDD 376 (695)
T ss_dssp EEEETTEEEEEEEETT---------------------------------CCEEEECCCSSS-----SEECCCBSCTTCSE
T ss_pred EEEECCEEEEEEEeCC---------------------------------CCeeEEecCCCC-----eEEEEeecCCCCCE
Confidence 8888998888865420 122223322210 12234457778877
Q ss_pred EE----EeeCCCeEEEEEccChhh
Q 013436 413 IY----TGSHDSCVYVYDLVSIQI 432 (443)
Q Consensus 413 l~----tg~~dg~v~iwd~~~g~~ 432 (443)
++ +....+.|++||+.+++.
T Consensus 377 l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 377 AYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEcCCCCCCEEEEEECCCCcE
Confidence 66 333468899999988763
No 177
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.70 E-value=1.1e-14 Score=128.34 Aligned_cols=243 Identities=10% Similarity=0.021 Sum_probs=163.0
Q ss_pred ceEEEEECCCCCEEE-EEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee
Q 013436 126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~-~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
...+++++++|++++ +...++.|.+|+..+..... . .......+.+++++++++++++.. ++.|.+||..+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~--~-~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV--L-PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE--C-CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce--E-eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 678999999999777 44678899999976653221 1 122223578899999998555544 889999998765432
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCE
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 284 (443)
.... . ....+..++++++|+.+++...++.|.+|+..+.............+..+++. +++++
T Consensus 101 ~~~~-~---------------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~l 163 (270)
T 1rwi_B 101 VLPF-D---------------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNV 163 (270)
T ss_dssp ECCC-C---------------SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC-TTCCE
T ss_pred eeec-C---------------CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe-CCCCE
Confidence 2110 0 11257889999999977777778899999876554332222333467889996 67887
Q ss_pred EEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcc
Q 013436 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 364 (443)
Q Consensus 285 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (443)
+++...++.|.+||.. ..........+...+..++++++|.++++...++.|.+||......
T Consensus 164 ~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~-------------- 225 (270)
T 1rwi_B 164 YVTDTDNNRVVKLEAE----SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-------------- 225 (270)
T ss_dssp EEEEGGGTEEEEECTT----TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC--------------
T ss_pred EEEECCCCEEEEEecC----CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc--------------
Confidence 7777778899999986 3333332233346789999999998888877788999999865221
Q ss_pred cccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhh
Q 013436 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
......+ ...... .+++++|+++++...++.|+++++...+..
T Consensus 226 --------------------~~~~~~~--~~~p~~----i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 226 --------------------TVLPFTG--LNTPLA----VAVDSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp --------------------EECCCCS--CSCEEE----EEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred --------------------eeeccCC--CCCcee----EEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 0000001 011222 235568998888899999999999876654
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.69 E-value=5.2e-15 Score=135.47 Aligned_cols=179 Identities=13% Similarity=0.221 Sum_probs=123.9
Q ss_pred ceEEEEECCCCCEEEEEE---------CCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC---C--
Q 013436 126 RAYVSQFSADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---P-- 191 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---g-- 191 (443)
.+...++ ||++++... .++.|.+||+.++.... . ..+..++|||||+.|++++.+ +
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-------~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I-------ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E-------ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c-------ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 4667778 898887643 25679999999875332 1 347889999999999987754 3
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-----------------------
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----------------------- 248 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----------------------- 248 (443)
.|.+|++.+++...+.. +.. +..++|+|||+.|+.++.+
T Consensus 86 ~l~~~~~~~g~~~~l~~-----------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 147 (347)
T 2gop_A 86 EIWVADLETLSSKKILE-----------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFF 147 (347)
T ss_dssp EEEEEETTTTEEEEEEE-----------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC-------
T ss_pred eEEEEECCCCceEEEEc-----------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccc
Confidence 48888888776543322 112 7889999999998888642
Q ss_pred ----CeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCC-------eEEEEecccCCCCCceeeeecCCCC
Q 013436 249 ----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN-------LCKVWDRRCLNVKGKPAGVLMGHLE 317 (443)
Q Consensus 249 ----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (443)
..|++||+.+++.+..+.. . .+..+.|+ +++ +++++..+. ...||.+. .++. ..+..+ .
T Consensus 148 ~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d----~~~~-~~l~~~-~ 217 (347)
T 2gop_A 148 DGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWE----DGKE-EKMFEK-V 217 (347)
T ss_dssp --CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEE----TTEE-EEEEEE-E
T ss_pred cCccceEEEEECCCCeEEeeecC-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeC----CCce-EEeccC-c
Confidence 5699999998886455554 4 78999998 677 777776542 44566554 2332 233333 4
Q ss_pred CeEEEEECCCCCEEEEEeCC--------CCEEEEe
Q 013436 318 GITFIDSRGDGRYLISNGKD--------QAIKLWD 344 (443)
Q Consensus 318 ~v~~~~~~~~~~~l~s~~~d--------g~i~iwd 344 (443)
.+..+ +|+|++|+.++.+ ..|.+||
T Consensus 218 ~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 218 SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred ceeeE--CCCCCEEEEEEccccCCccccceEEEEC
Confidence 55544 9999988877754 3577777
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=6.7e-16 Score=144.01 Aligned_cols=192 Identities=11% Similarity=0.046 Sum_probs=128.8
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEE-------------------EEECCCCCeEEEE-
Q 013436 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-------------------TSLSPDQRHLVYA- 187 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-------------------i~~s~~~~~l~~~- 187 (443)
..+.|+|||++|+.++.++.|++||+.++...... ... ...... +.|+|+++.++.+
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~--~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 160 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY-TVD--EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE 160 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE-ecc--cccCCCCCEEEeccCCccccccccccccCCCCcceeeee
Confidence 34789999999999999999999999987543321 111 111112 3568888877654
Q ss_pred ----ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecC------CeEEEEEC
Q 013436 188 ----SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSD------DCIYVYDL 256 (443)
Q Consensus 188 ----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d------g~i~iwd~ 256 (443)
..+..|.+||+.+++...+.. +...+..+.|+| +++.|+..+.+ ..|++||+
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~~~~-----------------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELEVIHQ-----------------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNE 223 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEEEEEE-----------------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEET
T ss_pred eccCCCcceEEEEECCCCcEEeecc-----------------CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEEC
Confidence 356689999998877544331 112688899999 78877776543 36899998
Q ss_pred CCCeeeEEeecc--CCCeEEEEEeCCCCCEEEEeeCC-----CeEEEEecccCCCCCceeeeecCCCCCeEEEEECC-CC
Q 013436 257 EANKLSLRILAH--TSDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DG 328 (443)
Q Consensus 257 ~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 328 (443)
..++. ..+..+ ...+..++|+ ++++.|+.++.+ +.|.+||+. .++...... .. ... +.|+| +|
T Consensus 224 ~~~~~-~~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~~d~~----~g~~~~l~~-~~-~~~-~~~s~~dg 294 (396)
T 3c5m_A 224 DGSNV-RKIKEHAEGESCTHEFWI-PDGSAMAYVSYFKGQTDRVIYKANPE----TLENEEVMV-MP-PCS-HLMSNFDG 294 (396)
T ss_dssp TSCCC-EESSCCCTTEEEEEEEEC-TTSSCEEEEEEETTTCCEEEEEECTT----TCCEEEEEE-CC-SEE-EEEECSSS
T ss_pred CCCce-eEeeccCCCccccceEEC-CCCCEEEEEecCCCCccceEEEEECC----CCCeEEeee-CC-CCC-CCccCCCC
Confidence 76653 333333 2357889998 777766665543 459999997 444332221 11 233 88999 99
Q ss_pred CEEEEEe----------------CCCCEEEEeCCCC
Q 013436 329 RYLISNG----------------KDQAIKLWDIRKM 348 (443)
Q Consensus 329 ~~l~s~~----------------~dg~i~iwd~~~~ 348 (443)
+++++++ .+..|++||+.+.
T Consensus 295 ~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 295 SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp SEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred ceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 9888754 2467999998763
No 180
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.68 E-value=3.5e-14 Score=125.10 Aligned_cols=188 Identities=12% Similarity=0.093 Sum_probs=142.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceeccc
Q 013436 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (443)
.+++|++++.++.|.+||.++|+.+.+..... ...+.++.++|+|++|+ +.++.|..||. +++........
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~--~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~---- 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK--GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP---- 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT--TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC----
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc--cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC----
Confidence 46789999999999999999997776543321 13478899999999888 45788999998 67654433321
Q ss_pred CceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECCCCeeeEEeec------cCCCeEEEEEeCCCCCEEEE
Q 013436 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILA------HTSDVNTVCFGDESGHLIYS 287 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~l~~ 287 (443)
....+.++.+.++|+.+++.+. ++.|..+|. +++.+..+.. +......+++. ++++++++
T Consensus 75 -----------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv~ 141 (276)
T 3no2_A 75 -----------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN-KKGNYLVP 141 (276)
T ss_dssp -----------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC-TTSCEEEE
T ss_pred -----------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC-CCCCEEEE
Confidence 1125788999999999999887 788888886 6776666542 22234556675 78999999
Q ss_pred eeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 288 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
...++.|..||. .++.+..+... ....++...++++++++++.++.|..+|..+++.
T Consensus 142 ~~~~~~v~~~d~-----~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 142 LFATSEVREIAP-----NGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp ETTTTEEEEECT-----TSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred ecCCCEEEEECC-----CCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 999999999997 47777777654 3456677889999999998888999999988443
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=7.8e-14 Score=134.86 Aligned_cols=277 Identities=13% Similarity=0.137 Sum_probs=177.2
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECC--CCeEEEEeeecCCccceEEEEEEC----CCCCeEEEEEC-CCeEEEE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLS----PDQRHLVYASM-SPIVHIV 196 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~i~~s----~~~~~l~~~~~-dg~i~iw 196 (443)
...+..+.|+|||+++++++.|+.|.+||+. +++.+...... .....++|+ |||+++++++. ++.|.++
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G----~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG----SEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC----SEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC----CCCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence 3457799999999999999999999999995 66555543322 136789999 69998887765 5899999
Q ss_pred ECCCCceeccccceecc-c------------------Cceeecc-CCCCc-------------------eecEEEEEEeC
Q 013436 197 DVGSGTMESLANVTEIH-D------------------GLDFSAA-DDGGY-------------------SFGIFSLKFST 237 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~-~------------------~~~~~~~-~~~~~-------------------~~~i~~l~~~~ 237 (443)
|..+.+........... . +..+... ...+. .....++.|+|
T Consensus 272 D~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p 351 (567)
T 1qks_A 272 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 351 (567)
T ss_dssp ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred ECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC
Confidence 99888766544332110 0 0000000 00000 11234678999
Q ss_pred CCCEEEEEe-cCCeEEEEECCCCeeeEEeec-----cCCCeEEEEEeCCCCCEEEEee-CCCeEEEEecccCCC---CCc
Q 013436 238 DGRELVAGS-SDDCIYVYDLEANKLSLRILA-----HTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNV---KGK 307 (443)
Q Consensus 238 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~---~~~ 307 (443)
++++++++. .++.|.++|+.+++.+..+.. |.+.-..+ ++|..+.+++++. .++.|.++|...... ..+
T Consensus 352 dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~k 430 (567)
T 1qks_A 352 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK 430 (567)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCE
Confidence 999887765 578899999999987776654 32212122 4433355555554 468999999873110 156
Q ss_pred eeeeecCCCCCeEEEEECCCCCEEEEEeC-------CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCC
Q 013436 308 PAGVLMGHLEGITFIDSRGDGRYLISNGK-------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (443)
Q Consensus 308 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (443)
.+..+......-..+..+|++++|.+... .+.|.++|+.+.+.--.
T Consensus 431 vv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~--------------------------- 483 (567)
T 1qks_A 431 ILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS--------------------------- 483 (567)
T ss_dssp EEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS---------------------------
T ss_pred EEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccccc---------------------------
Confidence 67777655444456789999999988663 35999999987411000
Q ss_pred CCeeEEEEe-----cc-ceeeeeeEEEecCCccCCccEEEEee-----CCCeEEEEEccChhhhhHhH
Q 013436 381 CDQSVATYK-----GH-SVLRTLIRCHFSPVYSTGQKYIYTGS-----HDSCVYVYDLVSIQILFCRQ 437 (443)
Q Consensus 381 ~~~~~~~~~-----~~-~~~~~~~~~~~~~~~s~d~~~l~tg~-----~dg~v~iwd~~~g~~~~~~~ 437 (443)
...+..+. +- ... .-.+++.|+|+|+++..+. .++.|.|+|..+++++..++
T Consensus 484 -~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 484 -DPEFKTLPIAEWAGITEGQ----PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp -CCCEEEECHHHHHTCCSSC----CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred -CCCcEEeccccccccCCCC----cceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 00011111 00 001 1234556777999887763 37999999999999887765
No 182
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.66 E-value=6.3e-14 Score=124.58 Aligned_cols=201 Identities=13% Similarity=0.164 Sum_probs=144.6
Q ss_pred CCCCceEEEEE-CCCCCEEEEEEC-CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECC
Q 013436 122 QTTSRAYVSQF-SADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (443)
Q Consensus 122 ~h~~~v~~~~~-s~~~~~l~~g~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 199 (443)
++...+..+++ .++++++++... ++.|.+||. ++..+... ...+...+.+++++|+++++++...++.|.+||..
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~--~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 150 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKF--GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN 150 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEE--CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEe--cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC
Confidence 34567899999 577777776643 789999994 45444432 12233458999999999977777778999999965
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeecc--CCCeEEEEE
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--TSDVNTVCF 277 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~ 277 (443)
.. ........ ++...+..++++|+|+++++...++.|++||.. ++.+..+..+ ...+..+++
T Consensus 151 g~-~~~~~~~~--------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~ 214 (286)
T 1q7f_A 151 GN-VLHKFGCS--------------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGI 214 (286)
T ss_dssp SC-EEEEEECT--------------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEE
T ss_pred CC-EEEEeCCC--------------CccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEE
Confidence 33 22211100 122257899999999988777788999999974 4555555433 357899999
Q ss_pred eCCCCCEEEEeeCCC-eEEEEecccCCCCCceeeeecCCC--CCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 278 GDESGHLIYSGSDDN-LCKVWDRRCLNVKGKPAGVLMGHL--EGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
. ++++++++...++ .|.+||. .++.+..+..+. ..+..++++|+|+++++ +.|+.|++|++...
T Consensus 215 d-~~G~l~v~~~~~~~~i~~~~~-----~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 215 N-SNGEILIADNHNNFNLTIFTQ-----DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp C-TTCCEEEEECSSSCEEEEECT-----TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred C-CCCCEEEEeCCCCEEEEEECC-----CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 7 7888888887776 9999996 456666665443 34789999999987777 57999999998663
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=3.3e-14 Score=130.10 Aligned_cols=183 Identities=16% Similarity=0.157 Sum_probs=125.5
Q ss_pred CceEEEEECCCCCEEEEEECC---C--eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC---------
Q 013436 125 SRAYVSQFSADGSLFVAGFQA---S--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------- 190 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d---~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d--------- 190 (443)
..+..++|||||++|+..+.+ + .|.+|++.+++.... .. +.. +..++|+||++.|++++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l-~~---~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI-LE---AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE-EE---ESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE-Ec---CCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 568899999999999987654 3 388889988754332 11 123 8899999999999987642
Q ss_pred ------------------CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC---
Q 013436 191 ------------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--- 249 (443)
Q Consensus 191 ------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg--- 249 (443)
..|++||+.+++....... . .+..+.|+|+| +++++..++
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-----------------~~~~~~~spdg-~~~~~~~~~~~~ 194 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-----------------RFSSGIWHRDK-IVVNVPHREIIP 194 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEEE-E-----------------TTCEEEEETTE-EEEEEECCCSSC
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-----------------CcccccCCCCe-EEEEEecccccc
Confidence 5789999988765221111 0 35678999999 777775542
Q ss_pred ------eEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCC--------CeEEEEecccCCCCCceeeeecCC
Q 013436 250 ------CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKGKPAGVLMGH 315 (443)
Q Consensus 250 ------~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~ 315 (443)
.|+++| +++. ..+..+ ..+..+ + ++++.|+.++.+ ..|.+|| . ++.......+
T Consensus 195 ~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--s-pdg~~l~~~~~~~~~~~~~~~~l~~~d-~-----~~~~~l~~~~ 261 (347)
T 2gop_A 195 QYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--D-SDGERILLYGKPEKKYMSEHNKLYIYD-G-----KEVMGILDEV 261 (347)
T ss_dssp CSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--E-ECSSCEEEEECCSSSCCCSSCEEEEEC-S-----SCEEESSTTC
T ss_pred cccccccEEEeC--CCce-EEeccC-cceeeE--C-CCCCEEEEEEccccCCccccceEEEEC-C-----CceEeccccC
Confidence 455666 5543 444444 455544 6 677777766643 3677777 2 2334444456
Q ss_pred CCCeEE-EEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 316 LEGITF-IDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 316 ~~~v~~-~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
...+.. +.|+ ++ ++++++.++.++|| +.+
T Consensus 262 ~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 262 DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp CSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 677886 8999 88 88899999999999 864
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=7.4e-14 Score=126.66 Aligned_cols=248 Identities=8% Similarity=-0.038 Sum_probs=162.8
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
.....+++. +++++++...++.|.+||..+++.+..... ...+..++++++++.+++...++.|.+||..+++..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~----~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG----FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC----CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC----CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 345677774 455556666679999999999977665421 234888999999854444448899999999988765
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe--cCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCC
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 282 (443)
........ .+.......+++ ++..++++. .++.|.++|+.+++.+..+.. ......+++. +++
T Consensus 119 ~~i~~g~~-----------~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~-~dG 183 (328)
T 3dsm_A 119 GYIECPDM-----------DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMD-KYN 183 (328)
T ss_dssp EEEECTTC-----------CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEEC-TTS
T ss_pred EEEEcCCc-----------cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEc-CCC
Confidence 43322110 000012334556 344455554 488999999999988877764 3345788886 778
Q ss_pred CEEEEeeCC----------CeEEEEecccCCCCCceeeeecCC-CCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 283 HLIYSGSDD----------NLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 283 ~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
++++++..+ +.|.++|.. +++....+... ......++++|+++.|.++.. .|.+||..+.+..
T Consensus 184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~----t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 184 KMWTITDGGYEGSPYGYEAPSLYRIDAE----TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp EEEEEBCCBCTTCSSCBCCCEEEEEETT----TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred CEEEEECCCccCCccccCCceEEEEECC----CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 877776654 789999997 66666555422 236899999999998887754 8999999875431
Q ss_pred cccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccC-CccEEEEe----eCCCeEEEEE
Q 013436 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTG----SHDSCVYVYD 426 (443)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~tg----~~dg~v~iwd 426 (443)
... + +... .... +..+++| ++.++++. ..++.|.+||
T Consensus 258 ~~~------------------------------~--~~~~--~~~p----~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 258 VRP------------------------------F--LEFR--DTKY----YGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp SSC------------------------------S--BCCC--SSCE----EEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred eee------------------------------e--ecCC--CCce----EEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 100 0 0000 0111 2223555 56666666 6789999999
Q ss_pred ccChhhhhHhH
Q 013436 427 LVSIQILFCRQ 437 (443)
Q Consensus 427 ~~~g~~~~~~~ 437 (443)
.. |+++..++
T Consensus 300 ~~-g~~~~~i~ 309 (328)
T 3dsm_A 300 PQ-GKLIDEFY 309 (328)
T ss_dssp TT-CCEEEEEE
T ss_pred CC-CCEEEEEE
Confidence 98 88776553
No 185
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.65 E-value=1.8e-14 Score=145.47 Aligned_cols=202 Identities=13% Similarity=0.087 Sum_probs=133.6
Q ss_pred CCCceEEEEECCCCCEEEEEECC-----CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCe-----
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI----- 192 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~----- 192 (443)
|...+..++|||||++||.+..+ ..|++||+.+++.+.... +...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 44478899999999999987654 369999999986654311 1112357899999 99998887654
Q ss_pred ---------EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC-----eEEEEECCC
Q 013436 193 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEA 258 (443)
Q Consensus 193 ---------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~ 258 (443)
|++|++.++.......... ..+...+..+.|+|||++|+..+.++ .|++||+.+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFAT------------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECC------------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred cccCCCCCEEEEEECCCCchhCEEEecc------------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence 8899987765321111000 01222477899999999988877554 899999987
Q ss_pred C--eeeEEeeccCCCeEEEEEeCCCCCEEEEeeC----CCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEE
Q 013436 259 N--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD----DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 332 (443)
Q Consensus 259 ~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 332 (443)
+ ++...+..+...+....+ ++++.|+..+. ++.|.+||+.... ......+..+...+..++++ ++.+++
T Consensus 304 ~~~~~~~~l~~~~~~~~~~~~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~~~lv~ 378 (741)
T 1yr2_A 304 GKIGPVTALIPDLKAQWDFVD--GVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-GNRLFA 378 (741)
T ss_dssp TEECCCEEEECSSSSCEEEEE--EETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-BTEEEE
T ss_pred CCCcccEEecCCCCceEEEEe--ccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-CCEEEE
Confidence 7 314556555555555543 56666666654 3469999986211 23333344455556678887 566777
Q ss_pred EEeCCCCEEEEeCC
Q 013436 333 SNGKDQAIKLWDIR 346 (443)
Q Consensus 333 s~~~dg~i~iwd~~ 346 (443)
+...|+..+||.+.
T Consensus 379 ~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 379 SYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 88889888877654
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=1.4e-14 Score=131.86 Aligned_cols=248 Identities=9% Similarity=0.027 Sum_probs=160.7
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
..|.+++|++++..++..+.++.++.|. +..... ...+...+.+++|+|++++++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLE---ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEE---EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEE---EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 3467788899887777777788899992 323332 2233345789999999997778888999999999887654
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC----CeEEEEECCCCeeeEEee--ccCCCeEEEEEe
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRIL--AHTSDVNTVCFG 278 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~ 278 (443)
..... +...+.+++++|+|+++++...+ +.|.+||..++.....+. .+...+..+++.
T Consensus 80 ~~~~~----------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d 143 (333)
T 2dg1_A 80 RPFVS----------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD 143 (333)
T ss_dssp EEEEC----------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred EEeeC----------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC
Confidence 33210 11268999999999977777666 689999998876543332 234578999997
Q ss_pred CCCCCEEEEeeC------CCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEE-EEeCCCCEEEEeCCCC-CC
Q 013436 279 DESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKM-SS 350 (443)
Q Consensus 279 ~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~-~~ 350 (443)
++++++++... .+.|..+|.. .++.. .+......+..++|+|+++.|+ +.+.++.|.+||+... ..
T Consensus 144 -~~g~l~v~~~~~~~~~~~~~l~~~~~~----~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~ 217 (333)
T 2dg1_A 144 -SKGGFYFTDFRGYSTNPLGGVYYVSPD----FRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT 217 (333)
T ss_dssp -TTSCEEEEECCCBTTBCCEEEEEECTT----SCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred -CCCCEEEEeccccccCCCceEEEEeCC----CCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC
Confidence 77887776553 3456666654 22322 2323344678999999998664 4456789999998641 11
Q ss_pred ccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccCh
Q 013436 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSI 430 (443)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g 430 (443)
..... ......+.++. .. ....++++|+++++...++.|.+||. ++
T Consensus 218 ~~~~~--------------------------~~~~~~~~~~~---~~----~~i~~d~~G~l~v~~~~~~~v~~~d~-~g 263 (333)
T 2dg1_A 218 IQPFG--------------------------ATIPYYFTGHE---GP----DSCCIDSDDNLYVAMYGQGRVLVFNK-RG 263 (333)
T ss_dssp EEEEE--------------------------EEEEEECCSSS---EE----EEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred ccccc--------------------------ceEEEecCCCC---CC----CceEECCCCCEEEEEcCCCEEEEECC-CC
Confidence 00000 00000111111 11 12345668998888888899999998 45
Q ss_pred hhhh
Q 013436 431 QILF 434 (443)
Q Consensus 431 ~~~~ 434 (443)
+.+.
T Consensus 264 ~~~~ 267 (333)
T 2dg1_A 264 YPIG 267 (333)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 5443
No 187
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.62 E-value=8.4e-14 Score=126.46 Aligned_cols=213 Identities=14% Similarity=0.095 Sum_probs=151.4
Q ss_pred CCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCe-EEEEeeec------CCccceEEEEEECC-CCCeEEEEE-CCCe
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILA------KSLRWTVTDTSLSP-DQRHLVYAS-MSPI 192 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~-~~~~~~~~------~~~~~~v~~i~~s~-~~~~l~~~~-~dg~ 192 (443)
++-.....++++|+|+++++...++.|++||..... .+...... ..+-..+..++++| ++.++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 344578999999999988888889999999986542 22221100 22333588999999 777777776 6899
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEecCCeEEEEECCCCeeeEEee--ccC
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRIL--AHT 269 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~ 269 (443)
|++|+. ++............. ....++-.....++++|+ +.++++...++.|++||..+++.+..+. .+.
T Consensus 168 I~~~~~-~g~~~~~~~~~g~~~------~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~ 240 (329)
T 3fvz_A 168 IVQFSP-SGKFVTQWGEESSGS------SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG 240 (329)
T ss_dssp EEEECT-TSCEEEEECEECCSS------SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT
T ss_pred EEEEcC-CCCEEEEeccCCCCC------CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC
Confidence 999994 444433222111000 000122335789999998 7777777788999999999888887774 456
Q ss_pred CCeEEEEEeCCCCCEEEEe-------eCCCeEEEEecccCCCCCceeeee---cCCCCCeEEEEECCCCCEEEEEeCCCC
Q 013436 270 SDVNTVCFGDESGHLIYSG-------SDDNLCKVWDRRCLNVKGKPAGVL---MGHLEGITFIDSRGDGRYLISNGKDQA 339 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~-------~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~ 339 (443)
..+..++++ + +..+++. ..+..|++||.. .++.+..+ .++...+..|+++|+|.++++...++.
T Consensus 241 ~~~~~~~~~-p-g~~~~~~g~~~v~~~~~~~v~~~~~~----~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~ 314 (329)
T 3fvz_A 241 RNVFAISYI-P-GFLFAVNGKPYFGDQEPVQGFVMNFS----SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNT 314 (329)
T ss_dssp TCEEEEEEE-T-TEEEEEECCCCTTCSCCCCEEEEETT----TCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCC
T ss_pred CCcceeeec-C-CEEEEeCCCEEeccCCCcEEEEEEcC----CCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCE
Confidence 678899998 4 4333333 334589999987 77777776 356778999999999988888888999
Q ss_pred EEEEeCCC
Q 013436 340 IKLWDIRK 347 (443)
Q Consensus 340 i~iwd~~~ 347 (443)
|++|++..
T Consensus 315 I~~~~~~~ 322 (329)
T 3fvz_A 315 VWKFTLTE 322 (329)
T ss_dssp EEEEEEEE
T ss_pred EEEEeCCc
Confidence 99999865
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.62 E-value=7.6e-13 Score=127.94 Aligned_cols=191 Identities=15% Similarity=0.038 Sum_probs=138.5
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECC--CCceecccccee
Q 013436 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG--SGTMESLANVTE 211 (443)
Q Consensus 134 ~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~ 211 (443)
|.+.++++...++.|.++|..+++.+..+.... .+..+.|+||++++++++.++.|.+||+. +.+........
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~----~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G- 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG- 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC----CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-
Confidence 445667777788999999999987766543222 36789999999999999999999999995 55443222110
Q ss_pred cccCceeeccCCCCceecEEEEEEe----CCCCEEEEEec-CCeEEEEECCCCeeeEEeecc-----------CCCeEEE
Q 013436 212 IHDGLDFSAADDGGYSFGIFSLKFS----TDGRELVAGSS-DDCIYVYDLEANKLSLRILAH-----------TSDVNTV 275 (443)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i 275 (443)
.....++|+ |||+++++++. ++.|.++|..+.+.+..+... ...+..+
T Consensus 240 ----------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 240 ----------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp ----------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred ----------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence 035689999 69998887765 589999999999888776521 1257788
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe-CCCCEEEEeCCCC
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKM 348 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~ 348 (443)
..++....+++....+|.|.++|..... ...+..+ ........+.|+|++++|+++. .++.|.++|+.+.
T Consensus 304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~--~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 304 LASHYRPEFIVNVKETGKILLVDYTDLN--NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSS--EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEcCCCCEEEEEecCCCeEEEEecCCCc--cceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 8875556666667778999999987221 1112222 2334567889999999887665 5789999999983
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1.3e-13 Score=138.68 Aligned_cols=246 Identities=12% Similarity=0.067 Sum_probs=154.3
Q ss_pred CCCCEEEEEECCC-----eEEEEECCCCeEEEEe---eecCCccceEEEEEECCCCCeEEEEECCC-----eEEEEECCC
Q 013436 134 ADGSLFVAGFQAS-----QIRIYDVERGWKIQKD---ILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGS 200 (443)
Q Consensus 134 ~~~~~l~~g~~d~-----~i~iwd~~~~~~~~~~---~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-----~i~iwd~~~ 200 (443)
|+|++++....++ .+.+.+..++...... ....++...+..++|||||++||.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 7888877654332 3444454444221110 11234555789999999999999876543 899999999
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCe----------------EEEEECCCCeee--
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC----------------IYVYDLEANKLS-- 262 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~-- 262 (443)
++...... . ...+..++|+|||+.|+.++.++. |++|++.+++..
T Consensus 161 g~~~~~~~-~----------------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~ 223 (710)
T 2xdw_A 161 AKELPDVL-E----------------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI 223 (710)
T ss_dssp TEEEEEEE-E----------------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE
T ss_pred CCCCcccc-c----------------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce
Confidence 87654211 1 013557899999999999887765 999999887632
Q ss_pred EEee--ccCCCeEEEEEeCCCCCEEEEeeC-----CCeEEEEecccCC--CCCc-eeeeecCCCCCeEEEEECCCCCEEE
Q 013436 263 LRIL--AHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLN--VKGK-PAGVLMGHLEGITFIDSRGDGRYLI 332 (443)
Q Consensus 263 ~~~~--~~~~~v~~i~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~ 332 (443)
..+. .+...+..+.|+ +++++|+.++. +..|.+||+.... ..+. ....+..+...+.. .|+|+|..|+
T Consensus 224 ~v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~ 301 (710)
T 2xdw_A 224 LCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFT 301 (710)
T ss_dssp EEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEE
T ss_pred EEeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEE
Confidence 2222 245567899998 78888877664 5689999987200 0022 34555666666655 4888998887
Q ss_pred EEeCC----CCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccC
Q 013436 333 SNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (443)
Q Consensus 333 s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (443)
..+.+ +.|.+||+.+... .....+..|.....+..+. |++
T Consensus 302 ~~s~~~~~~~~l~~~d~~~~~~--------------------------------~~~~~l~~~~~~~~~~~~~----~~~ 345 (710)
T 2xdw_A 302 FKTNRHSPNYRLINIDFTDPEE--------------------------------SKWKVLVPEHEKDVLEWVA----CVR 345 (710)
T ss_dssp EEECTTCTTCEEEEEETTSCCG--------------------------------GGCEEEECCCSSCEEEEEE----EET
T ss_pred EEECCCCCCCEEEEEeCCCCCc--------------------------------ccceeccCCCCCCeEEEEE----EEc
Confidence 66653 3599999876321 0122333333211222223 344
Q ss_pred CccEEEEeeCCCe--EEEEEccChhhhh
Q 013436 409 GQKYIYTGSHDSC--VYVYDLVSIQILF 434 (443)
Q Consensus 409 d~~~l~tg~~dg~--v~iwd~~~g~~~~ 434 (443)
++.++++...|+. |++||+.+|+.+.
T Consensus 346 ~~~lv~~~~~~g~~~l~~~~~~~g~~~~ 373 (710)
T 2xdw_A 346 SNFLVLCYLHDVKNTLQLHDLATGALLK 373 (710)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred CCEEEEEEEECCEEEEEEEECCCCCEEE
Confidence 7788888888884 5667776676443
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=5.2e-12 Score=112.64 Aligned_cols=199 Identities=11% Similarity=0.087 Sum_probs=141.4
Q ss_pred cCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
..+...+.+++++++|+++++...++.|.+||.. +... ... .......+.++++.+++.++++...++.|..|+..
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYP-LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-Eec-CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 3445689999999999988877667899999988 5332 221 22233568999999999877776668889999876
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE-eeccCCCeEEEEEeC
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGD 279 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~ 279 (443)
++.... ... .....+..+++.+++.++++...++.|.+||. +++.... .......+..+++.
T Consensus 87 g~~~~~-~~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~- 149 (299)
T 2z2n_A 87 GIIKEY-TLP--------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG- 149 (299)
T ss_dssp SCEEEE-ECS--------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-
T ss_pred CcEEEE-eCC--------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc-
Confidence 332111 110 01125788999999988777777889999998 5543322 22345678999996
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCCCCceee-eecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
++++++++...++.|..||.. ++... ........+..++++++++++++...++.|.+||.
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITES-----GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp TTSCEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CCCCEEEEeCCCCEEEEEcCC-----CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 778887777777899999972 22222 23334557889999999998777767888999998
No 191
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.60 E-value=2.7e-12 Score=115.53 Aligned_cols=246 Identities=17% Similarity=0.191 Sum_probs=158.2
Q ss_pred CceEEEEECCCCCEEEE-------EECCCeEEEEECCCCeEEEEee-ecCCccceEEEEEECCC-CCeEEEEECCCeEEE
Q 013436 125 SRAYVSQFSADGSLFVA-------GFQASQIRIYDVERGWKIQKDI-LAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHI 195 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~-------g~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~i 195 (443)
....+++|+++|.++++ +..++.|.+||..+++...... ...++...+.+++++++ +++ .+++..+.|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l-~v~~~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQL-FVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEE-EEEETTTEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcE-EEEECCCCEEE
Confidence 45689999999998888 5678899999988775432111 00123346889999999 654 44454557999
Q ss_pred EECCCCceecc-ccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC---------------CeEEEEECCCC
Q 013436 196 VDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------------DCIYVYDLEAN 259 (443)
Q Consensus 196 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d---------------g~i~iwd~~~~ 259 (443)
||.. ++.... ..... ......+.+++++++|+++++...+ +.|..||.. +
T Consensus 97 ~d~~-g~~~~~~~~~~~------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSE------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp EETT-SCEEECCSBCTT------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred EeCC-CCEEEEEeccCC------------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 9988 655433 21100 0112257889999999877776554 578888876 5
Q ss_pred eeeEEeeccCCCeEEEEEe---CCCCC-EEEEeeCCCeEEEEecccCCCCCc-----eeeeecCCC-CCeEEEEECCCCC
Q 013436 260 KLSLRILAHTSDVNTVCFG---DESGH-LIYSGSDDNLCKVWDRRCLNVKGK-----PAGVLMGHL-EGITFIDSRGDGR 329 (443)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~---~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~-~~v~~~~~~~~~~ 329 (443)
+... +..+......++++ +++++ ++++...++.|.+||... .+. ....+..+. ..+..++++++|+
T Consensus 163 ~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 163 QMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG---PAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp CEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE---TTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred CEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC---CCccccceEEEECCCCCCCCCCceEECCCCC
Confidence 4333 33344556888886 14454 445556788999999751 122 223333343 5678899999999
Q ss_pred EEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCC
Q 013436 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (443)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 409 (443)
++++...++.|.+||..+.+ .+..+..+. .....+ .|+|+
T Consensus 239 l~v~~~~~~~i~~~d~~~g~----------------------------------~~~~~~~~~--~~~~~i----~~~~d 278 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGGQ----------------------------------PKMRIRCPF--EKPSNL----HFKPQ 278 (314)
T ss_dssp EEEEEETTTEEEEECTTCBS----------------------------------CSEEEECSS--SCEEEE----EECTT
T ss_pred EEEEEcCCCEEEEEcCCCCc----------------------------------EeEEEeCCC--CCceeE----EECCC
Confidence 88888888899999987522 222333332 122223 34568
Q ss_pred ccEEE-EeeCCCeEEEEEccC
Q 013436 410 QKYIY-TGSHDSCVYVYDLVS 429 (443)
Q Consensus 410 ~~~l~-tg~~dg~v~iwd~~~ 429 (443)
|+.|+ +...++.|..|++..
T Consensus 279 g~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 279 TKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEeCCCCeEEEEeCCC
Confidence 98554 555678999999875
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=2.6e-13 Score=121.26 Aligned_cols=203 Identities=13% Similarity=0.094 Sum_probs=139.8
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCC-ccceEEEEEECCCCCeEEEEEC------
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVYASM------ 189 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~~~~------ 189 (443)
...+..+...+.+++++|+|+++++...++.|.+||..++........... ....+.+++++|+|+++++.+.
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence 445566778899999999999888777778999999977754322111111 1124677999999998887321
Q ss_pred -----------CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC-
Q 013436 190 -----------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE- 257 (443)
Q Consensus 190 -----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~- 257 (443)
.+.|..++.. ++...... +......++|+|+++.+++.+.++.|++||+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-----------------~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~ 202 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPD-GTLSAPIR-----------------DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA 202 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTT-SCEEEEEC-----------------CCSSEEEEEECTTSCEEEEETTTTEEEEEEECS
T ss_pred cccccccccCCCcEEEEECCC-CCEEEeec-----------------CCCCCccEEECCCCCEEEEeCCCCeEEEEEECC
Confidence 2355555544 33222111 11246789999999988777778999999987
Q ss_pred CCee---eEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEE-CCCCCEEEE
Q 013436 258 ANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS-RGDGRYLIS 333 (443)
Q Consensus 258 ~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s 333 (443)
+++. ...+..+...+..+++. ++++++++. ++.|.+||. .++.+..+..+.. +++++| .|+++.|++
T Consensus 203 ~g~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~--~~~v~~~~~-----~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v 273 (296)
T 3e5z_A 203 RGETEYQGVHFTVEPGKTDGLRVD-AGGLIWASA--GDGVHVLTP-----DGDELGRVLTPQT-TSNLCFGGPEGRTLYM 273 (296)
T ss_dssp SSCEEEEEEEECCSSSCCCSEEEB-TTSCEEEEE--TTEEEEECT-----TSCEEEEEECSSC-CCEEEEESTTSCEEEE
T ss_pred CCcCcCCCeEeeCCCCCCCeEEEC-CCCCEEEEc--CCeEEEECC-----CCCEEEEEECCCC-ceeEEEECCCCCEEEE
Confidence 4543 22333345567789996 788876665 789999997 4667777776766 899999 689998888
Q ss_pred EeCCCCEEEEeCCC
Q 013436 334 NGKDQAIKLWDIRK 347 (443)
Q Consensus 334 ~~~dg~i~iwd~~~ 347 (443)
++.++ +.-++..+
T Consensus 274 ~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 274 TVSTE-FWSIETNV 286 (296)
T ss_dssp EETTE-EEEEECSC
T ss_pred EcCCe-EEEEEccc
Confidence 88763 55555555
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=2.8e-11 Score=107.86 Aligned_cols=198 Identities=9% Similarity=-0.006 Sum_probs=141.1
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
+...+.+++++++|.++++...++.|..||.. +.. ... ........+..+++.+++.++++...++.|.+||. +++
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEY-TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEE-eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence 45679999999999988887768899999987 322 222 12223346899999999987777777889999998 554
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE-eeccCCCeEEEEEeCCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDES 281 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~ 281 (443)
...... . .....+..+++.++++.+++...++.|..||. +++.... +......+..+++. ++
T Consensus 131 ~~~~~~-~--------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~-~~ 193 (299)
T 2z2n_A 131 IREYEL-P--------------NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG-ND 193 (299)
T ss_dssp EEEEEC-S--------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TT
T ss_pred EEEecC-C--------------CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC-CC
Confidence 332111 0 01125788999999987777767789999998 6654432 23345568899996 77
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCcee-eeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
++++++...++.|.+||.. +... .....+...+.+++++++|+++++...++.|..||..
T Consensus 194 g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 194 DALWFVEIIGNKIGRITTS-----GEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp SSEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CCEEEEccCCceEEEECCC-----CcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 8877776678899999983 2222 1233355678999999999977776678889999973
No 194
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.55 E-value=6.3e-12 Score=117.25 Aligned_cols=200 Identities=11% Similarity=0.089 Sum_probs=136.8
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC--eEEEEECCCCc
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGT 202 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg--~i~iwd~~~~~ 202 (443)
.....++|+++++++++...++.|++||..++.... .... .. ... ++|+|+++.|+++..++ .|.+++...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-~~~~--~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-VHPG--FK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-EEET--CC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-eecc--CC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 467899999999988887778999999999874433 2222 12 233 89999999999888766 78888876554
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE----eeccCCCe--EEEE
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR----ILAHTSDV--NTVC 276 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v--~~i~ 276 (443)
.......... .....+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++
T Consensus 206 ~~~~~g~~~~------------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia 273 (409)
T 3hrp_A 206 APTRIGQLGS------------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLI 273 (409)
T ss_dssp CEEEEEECCT------------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEE
T ss_pred eeEEeeeccc------------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEE
Confidence 3211100000 0112467789999555566677789999999987753322 11222222 3999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC---------------CCCeEEEEECCCCCEEEEEe-CCCCE
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---------------LEGITFIDSRGDGRYLISNG-KDQAI 340 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~s~~-~dg~i 340 (443)
|+|.++.++++...++.|+.|+.. +. +..+.++ -.....++++|+|+++++-. .++.|
T Consensus 274 ~~p~~g~lyv~d~~~~~I~~~~~~-----g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I 347 (409)
T 3hrp_A 274 YYFVDSNFYMSDQNLSSVYKITPD-----GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCL 347 (409)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-----CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEE
T ss_pred EeCCCCEEEEEeCCCCEEEEEecC-----CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEE
Confidence 985467777777788899999975 22 2233222 23478999999999888887 88999
Q ss_pred EEEeCCC
Q 013436 341 KLWDIRK 347 (443)
Q Consensus 341 ~iwd~~~ 347 (443)
+.||+.+
T Consensus 348 ~~~~~~~ 354 (409)
T 3hrp_A 348 RKLDILD 354 (409)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9999765
No 195
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.55 E-value=8.6e-13 Score=132.06 Aligned_cols=202 Identities=15% Similarity=0.179 Sum_probs=133.8
Q ss_pred CCCCceEEEEECCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC-----
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----- 191 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg----- 191 (443)
+|...+..++|||||++||.+.. ...|++||+.+++.+.... .. .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KD--VKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EE--EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CC--ceeccEEEe-CCCEEEEEEecCccccc
Confidence 45668999999999999985432 2479999999997554311 11 112467899 999999988774
Q ss_pred --------eEEEEECCCCceeccccceecccCceeeccCCCC-ceecEEEEEEeCCCCEEEEEec----CCeEEEEECCC
Q 013436 192 --------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG-YSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEA 258 (443)
Q Consensus 192 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----dg~i~iwd~~~ 258 (443)
.|++|++.++.......... .. +...+..+.|+|||++|+.... ...|+++|+.+
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~------------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGA------------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESC------------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEec------------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence 49999998765321111100 01 1224678899999998866543 25899999987
Q ss_pred Ce-eeEEeeccCCCeEEEEEeCCCCCEEEEeeCC---CeEEEEecccCCCCCce--eeeecCCCCCeEEEEECCCCCEEE
Q 013436 259 NK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKP--AGVLMGHLEGITFIDSRGDGRYLI 332 (443)
Q Consensus 259 ~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~ 332 (443)
+. ....+..+....... +++.++.+++....+ +.|..+|+. .+.. ...+..|...+. .|+++++.|+
T Consensus 269 ~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~--~~s~~g~~lv 341 (693)
T 3iuj_A 269 ENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA----NPGPAHWRDLIPERQQVL--TVHSGSGYLF 341 (693)
T ss_dssp TTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT----SCCGGGCEEEECCCSSCE--EEEEETTEEE
T ss_pred CCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC----CCCccccEEEecCCCCEE--EEEEECCEEE
Confidence 63 355666666666555 443555555555443 678999987 3322 345556666655 8889998888
Q ss_pred EEeCCC---CEEEEeCCC
Q 013436 333 SNGKDQ---AIKLWDIRK 347 (443)
Q Consensus 333 s~~~dg---~i~iwd~~~ 347 (443)
....++ .|++||+..
T Consensus 342 ~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 342 AEYMVDATARVEQFDYEG 359 (693)
T ss_dssp EEEEETTEEEEEEECTTS
T ss_pred EEEEECCeeEEEEEECCC
Confidence 766544 688888764
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=5.8e-13 Score=133.58 Aligned_cols=192 Identities=11% Similarity=0.024 Sum_probs=123.7
Q ss_pred CCCCEEEEEECCC-----eEEEEECCCCeEEEEee---ecCCccceEEEEEECCCCCeEEEEE-----CCCeEEEEECCC
Q 013436 134 ADGSLFVAGFQAS-----QIRIYDVERGWKIQKDI---LAKSLRWTVTDTSLSPDQRHLVYAS-----MSPIVHIVDVGS 200 (443)
Q Consensus 134 ~~~~~l~~g~~d~-----~i~iwd~~~~~~~~~~~---~~~~~~~~v~~i~~s~~~~~l~~~~-----~dg~i~iwd~~~ 200 (443)
|+|++++....++ .|.+.+...+....... ...+|...+..++|||||++||.+. .+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 7888887766543 24444554442211111 1234566799999999999998543 346899999999
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCe-------------EEEEECCCCee----eE
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-------------IYVYDLEANKL----SL 263 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~~----~~ 263 (443)
++.......... ....++|+|||+.|+.++.+.. |++|++.++.. +.
T Consensus 157 g~~~~~~~~~~~----------------~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~ 220 (695)
T 2bkl_A 157 GEWSKVDVIEGG----------------KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH 220 (695)
T ss_dssp CCBCSSCCBSCC----------------TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred CCCcCCcccCcc----------------cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence 876411111100 1156899999999999988765 99999988762 22
Q ss_pred EeeccCCCeEEEEEeCCCCCEEEEeeCCC----eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEe---C
Q 013436 264 RILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG---K 336 (443)
Q Consensus 264 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~ 336 (443)
....+...+..+.|+ +++++|+.++.++ .|.+||.. .+. ...+..+...+....+ ++|.+++.+. .
T Consensus 221 ~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~----~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~ 293 (695)
T 2bkl_A 221 ERTGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPG----EKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAP 293 (695)
T ss_dssp CCCCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTT----CSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCT
T ss_pred ecCCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCC----CCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCC
Confidence 223455678899998 7788777776555 66666553 333 4445555566666667 5566444443 2
Q ss_pred CCCEEEEeCCCC
Q 013436 337 DQAIKLWDIRKM 348 (443)
Q Consensus 337 dg~i~iwd~~~~ 348 (443)
++.|.+||+.+.
T Consensus 294 ~~~l~~~d~~~~ 305 (695)
T 2bkl_A 294 RQRVFEVDPAKP 305 (695)
T ss_dssp TCEEEEEBTTBC
T ss_pred CCEEEEEeCCCC
Confidence 578999998763
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=1.5e-12 Score=114.42 Aligned_cols=200 Identities=9% Similarity=0.020 Sum_probs=142.5
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
...+.+++++++|+++++.. ++.|.+||..+..... . .......+..+++.++++++++...++.|.+|+..+...
T Consensus 66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~--~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-L--PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-C--CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC
T ss_pred cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-e--ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee
Confidence 35688999999999666665 8899999987653221 1 112223588999999998777767788999997654432
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (443)
..... .....+..++++++|+++++...++.|.+||............+...+..+++. +++.
T Consensus 142 ~~~~~----------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d-~~g~ 204 (270)
T 1rwi_B 142 TVLPF----------------TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVD-EAGT 204 (270)
T ss_dssp EECCC----------------CSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEEC-TTCC
T ss_pred Eeecc----------------ccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEEC-CCCC
Confidence 21100 011146679999999977777678899999988766443333334678899996 7778
Q ss_pred EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
++++...++.|.+||.. ..........+...+.+++++++|+++++...++.|+++++...
T Consensus 205 l~v~~~~~~~v~~~~~~----~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 205 VYVTEHNTNQVVKLLAG----STTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEETTTSCEEEECTT----CSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEEECCCCcEEEEcCC----CCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 87777778899999986 32222222233467899999999998888888999999998764
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=5.4e-11 Score=106.05 Aligned_cols=197 Identities=14% Similarity=0.079 Sum_probs=140.5
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
....+.+++++++|+++++...++.|.+||.. +.... . ........+..+++.+++.++++...++.|..||.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-F-EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-E-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-E-ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 35678999999999988877778999999988 53332 2 222333468999999999877776667889999987 54
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE-EeeccCCCeEEEEEeCCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDES 281 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~ 281 (443)
.... .... ....+..+++.++++++++...++.|..+|.. ++... .+......+..+++. ++
T Consensus 94 ~~~~-~~~~--------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-~~ 156 (300)
T 2qc5_A 94 FTEY-PLPQ--------------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-SD 156 (300)
T ss_dssp EEEE-ECSS--------------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TT
T ss_pred eEEe-cCCC--------------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-CC
Confidence 4211 1100 11258899999999977777668899999987 55432 223345678899996 77
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCceee-eecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
++++++...++.|..+|.. ++... ....+...+..++++++++++++....+.|.+||.
T Consensus 157 g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNT-----GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp SSEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CCEEEEecCCCeEEEECCC-----CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 8877666667899999873 22222 22234457899999999988777767778999987
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=2.9e-11 Score=111.18 Aligned_cols=241 Identities=10% Similarity=0.012 Sum_probs=154.7
Q ss_pred EEEECCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeeec-CCc---cceEEEEEECCCCCeEEEEEC--CCe
Q 013436 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KSL---RWTVTDTSLSPDQRHLVYASM--SPI 192 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~----------~d~~i~iwd~~~~~~~~~~~~~-~~~---~~~v~~i~~s~~~~~l~~~~~--dg~ 192 (443)
.+++||||++++++. .++.|.+||..+.+.+...... ... ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999886 3678999999987666544322 110 122457999999999998874 478
Q ss_pred EEEEECCCCceecc-ccceecccCceeeccCCCCceecEEEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEee----
Q 013436 193 VHIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL---- 266 (443)
Q Consensus 193 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 266 (443)
|.++| .+++.... .... .++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus 150 v~viD-~t~~~~~~~i~~~--------------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~ 207 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP--------------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM 207 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC--------------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc
Confidence 99999 98876543 2211 124455554 45666778999999999 776653322
Q ss_pred -ccCCCe-EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC----------CCCCeEEEEECCCCCEEEEE
Q 013436 267 -AHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 267 -~~~~~v-~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~s~ 334 (443)
....++ ....+.+.++.++++ +..+.+.+.|+... ....+..+.- .......+.++|+++.|.+.
T Consensus 208 ~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~--~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~ 284 (373)
T 2mad_H 208 LTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAA--GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL 284 (373)
T ss_pred ccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCC--cceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEE
Confidence 111221 233455333444444 46789999998621 1112222211 11234447889998877765
Q ss_pred eC----------CCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecC
Q 013436 335 GK----------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 404 (443)
Q Consensus 335 ~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (443)
.. .+.|.++|+.+ .+.+..+.... ..+++
T Consensus 285 ~~~~~~~~~~~~~~~V~VID~~t----------------------------------~~vv~~i~~g~-------~p~~i 323 (373)
T 2mad_H 285 TSEQSAWKLHAAAKEVTSVTGLV----------------------------------GQTSSQISLGH-------DVDAI 323 (373)
T ss_pred eccCCcccccCCCCeEEEEECCC----------------------------------CEEEEEEECCC-------CcCeE
Confidence 43 35799999988 34445553222 12444
Q ss_pred CccCCcc-EEEEee-CCCeEEEEEccChhhhhH
Q 013436 405 VYSTGQK-YIYTGS-HDSCVYVYDLVSIQILFC 435 (443)
Q Consensus 405 ~~s~d~~-~l~tg~-~dg~v~iwd~~~g~~~~~ 435 (443)
.|+|||+ .++++. .++.|.+||+.+++.+..
T Consensus 324 ~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 5777999 788877 589999999999998766
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=6.6e-12 Score=114.07 Aligned_cols=286 Identities=14% Similarity=0.042 Sum_probs=172.1
Q ss_pred EECCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE----------CCCeEEE
Q 013436 131 QFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHI 195 (443)
Q Consensus 131 ~~s~~~~~l~~g~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----------~dg~i~i 195 (443)
...|+++.+++... ++.|.++|..+++.+..+..... + . ++++||+++++++. .++.|.+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~---P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL---P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS---C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC---C-c-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 45689988888765 57999999999977766543332 3 3 99999999888775 3678999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEEeeccCCCeE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVN 273 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~ 273 (443)
||..+.+......+...... .....-..++|+|||++++++.. ++.|.++|+.+++.+.++.... +
T Consensus 114 iD~~t~~v~~~I~v~~g~r~---------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~- 181 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRF---------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C- 181 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCC---------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-
T ss_pred EECCCCeEEEEEECCCcccc---------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-
Confidence 99999887654433210000 00002335899999999998864 6899999999999988885322 1
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC----CCCeE-EEEE-CCCCCEEEEEeCCCCEEEEeCCC
Q 013436 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----LEGIT-FIDS-RGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~v~-~~~~-~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
...+ |...+.+++.+.||.+.+.++... ++.......+ ...+. ...| .++|++++ .+.+|.|.+.|+..
T Consensus 182 ~~~~-P~g~~~~~~~~~DG~~~~v~~~~~---g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~ 256 (386)
T 3sjl_D 182 YHIF-PTAPDTFFMHCRDGSLAKVAFGTE---GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSS 256 (386)
T ss_dssp EEEE-EEETTEEEEEETTSCEEEEECCSS---SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTT
T ss_pred ceee-cCCCceeEEECCCCCEEEEECCCC---CeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCC
Confidence 2233 566777888889999999998731 2222111111 11221 2355 36776555 45589999999976
Q ss_pred CCCc--cccCC-c--ccccCcc---cccccCCCCCCcccCCC-----------CeeEEEEecccee--e--eeeEEEecC
Q 013436 348 MSSN--ASCNL-G--FRSYEWD---YRWMDYPPQARDLKHPC-----------DQSVATYKGHSVL--R--TLIRCHFSP 404 (443)
Q Consensus 348 ~~~~--~~~~~-~--~~~~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~--~~~~~~~~~ 404 (443)
.... ..... . .....|. ...+.++++...+.... ...+..+...... . .+-.-.++.
T Consensus 257 ~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~l 336 (386)
T 3sjl_D 257 GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSI 336 (386)
T ss_dssp SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEE
T ss_pred CcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceE
Confidence 5421 11110 0 0001111 11122333333222211 1233344332211 1 111224566
Q ss_pred CccCCcc-EEEEe-eCCCeEEEEEccChhhhhHhHH
Q 013436 405 VYSTGQK-YIYTG-SHDSCVYVYDLVSIQILFCRQS 438 (443)
Q Consensus 405 ~~s~d~~-~l~tg-~~dg~v~iwd~~~g~~~~~~~~ 438 (443)
.+++|++ +|++. ..++.|.++|..+++.+.+++.
T Consensus 337 avs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 337 NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 7888997 66665 5599999999999998877653
No 201
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.51 E-value=7.1e-12 Score=115.08 Aligned_cols=202 Identities=15% Similarity=0.127 Sum_probs=134.9
Q ss_pred CCceEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCC-CeEEEEECCCeEEEEECCC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~ 200 (443)
......++|+|||++|+++.. ++.|.+||+.+++.+.......+ ...+.+.|++ ..+++.+.||.+.+|++..
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 345678999999999998864 57899999999865543122222 2335677775 6778889999999999865
Q ss_pred -CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeee--EEeec------c---
Q 013436 201 -GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--LRILA------H--- 268 (443)
Q Consensus 201 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~------~--- 268 (443)
++......... .+.. ...++ .+.+++++..++..+.++.|+++|+...... ..+.. +
T Consensus 183 ~g~~~~~~~~~~-----~~~~-----~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 251 (361)
T 2oiz_A 183 DGKVASQSRSKQ-----MFSV-----KDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW 251 (361)
T ss_dssp TSSEEEEEECCC-----CSCT-----TTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC
T ss_pred CCcEeeeccccc-----eEcC-----CCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc
Confidence 44321110000 0000 00011 2334677777777888999999998765422 22211 0
Q ss_pred -CCCeEEEEEeCCCCCEEEEeeC-----------CCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 013436 269 -TSDVNTVCFGDESGHLIYSGSD-----------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 269 -~~~v~~i~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 336 (443)
......++++ ++++.++++.. .+.|.+||+. +.+.+..+..+. +..++|+|+|++|++++.
T Consensus 252 ~p~g~~~~a~~-~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~----t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 252 VPGGYNLVGLH-RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK----TKQRVARIPGRD--ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp EECCSSCEEEE-TTTTEEEEEEESSCCTTCTTCCCSEEEEEETT----TTEEEEEEECTT--CCEEEEETTTTEEEEECS
T ss_pred ccCCeeEEEEe-cCCCeEEEEEccCCCcccccCCCceEEEEECC----CCcEEEEEecCC--eeEEEECCCCCEEEEeCC
Confidence 1112236887 66566655432 3489999998 888888888776 899999999999998886
Q ss_pred CCCEEEEeCCCC
Q 013436 337 DQAIKLWDIRKM 348 (443)
Q Consensus 337 dg~i~iwd~~~~ 348 (443)
+.|.+||..+.
T Consensus 325 -~~v~v~D~~t~ 335 (361)
T 2oiz_A 325 -GNVNVYDISQP 335 (361)
T ss_dssp -SCEEEEECSSS
T ss_pred -CeEEEEECCCC
Confidence 99999999983
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=2.5e-11 Score=106.87 Aligned_cols=199 Identities=10% Similarity=0.029 Sum_probs=144.6
Q ss_pred cCCCccccCCC-CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC-CC
Q 013436 114 VNGPWPVDQTT-SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SP 191 (443)
Q Consensus 114 ~~~~~~~~~h~-~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg 191 (443)
.+..|.+..+. ..+.+++++|+|++|+ +.++.|..||. +++.+.+... .....+.++.+.++|+.+++.+. ++
T Consensus 25 G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~--~~~~~~~~~~~~~dG~~lv~~~~~~~ 99 (276)
T 3no2_A 25 KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA--PAGCEMQTARILPDGNALVAWCGHPS 99 (276)
T ss_dssp TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC--CTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC--CCCccccccEECCCCCEEEEecCCCC
Confidence 33445555444 4688999999999888 35778999999 6766665443 22235888999999999999887 77
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCC
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (443)
.|..+|. +++........... .++......+++.++|+++++...++.|..||.+ ++.+.++... ..
T Consensus 100 ~v~~vd~-~Gk~l~~~~~~~~~----------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~ 166 (276)
T 3no2_A 100 TILEVNM-KGEVLSKTEFETGI----------ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GT 166 (276)
T ss_dssp EEEEECT-TSCEEEEEEECCSC----------SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SC
T ss_pred EEEEEeC-CCCEEEEEeccCCC----------CcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CC
Confidence 8888876 45543333221100 0111133456788999999999999999999998 9888888654 34
Q ss_pred eEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC------CCeEEEEECCCCCEEEEEe
Q 013436 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL------EGITFIDSRGDGRYLISNG 335 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~ 335 (443)
+.++... ++++++++++.++.|..+|.. +++.+..+..+. ..+..+...++|.++++..
T Consensus 167 ~~~~~~~-~~g~~~v~~~~~~~v~~~d~~----tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 167 PFSSAFL-DNGDCLVACGDAHCFVQLNLE----SNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCEEEEC-TTSCEEEECBTTSEEEEECTT----TCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred ccceeEc-CCCCEEEEeCCCCeEEEEeCc----CCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 5667775 788999999888899999987 788888875432 2378888999999888874
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=7.5e-13 Score=120.76 Aligned_cols=175 Identities=14% Similarity=0.051 Sum_probs=129.1
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeE--------EEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
+++.+++++...++++|+.++ +++|+++.... ... .....+.. |+.++| |++.|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999875 66798654320 111 01123455 999999 99999998 889999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
+.+........ . |..++.++.+.+.. +++++.||.|.+||+.++.... +...|++++|
T Consensus 113 v~sl~~~~~~~---~-------------~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W 170 (388)
T 1xip_A 113 LEELSEFRTVT---S-------------FEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV 170 (388)
T ss_dssp SSSTTCEEEEE---E-------------CSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEE
T ss_pred chhhhccCccc---e-------------eecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEE
Confidence 98765322111 1 22257777776543 8889999999999999877543 4568999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCce--eeee------c---CCCCCeEEEEECCCCCEEEEEe
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKP--AGVL------M---GHLEGITFIDSRGDGRYLISNG 335 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~s~~ 335 (443)
+ ++| ++.|..||.+++|+.. .... ...+ . +|...|.+|.|.+++.+|++-.
T Consensus 171 S-pkG--~~vg~~dg~i~~~~~~----~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 171 T-NSQ--LAVLLKDRSFQSFAWR----NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp C-SSE--EEEEETTSCEEEEEEE----TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred c-CCc--eEEEEcCCcEEEEcCC----CccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 8 666 6789999999999886 4443 4444 2 4778899999999999888644
No 204
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.47 E-value=2.3e-11 Score=110.16 Aligned_cols=223 Identities=9% Similarity=-0.024 Sum_probs=148.2
Q ss_pred CCeEEEEECCCCeEEEEeee---cCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeecc
Q 013436 145 ASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (443)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (443)
++.|.+||..+++....... ..........+.+. +++.+++...++.|.+||..+++........
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~----------- 83 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF----------- 83 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-----------
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-----------
Confidence 78999999999865433211 11122346777774 3455555666789999999998875443211
Q ss_pred CCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccC-----CCeEEEEEeCCCCCEEEEee-CCCeEE
Q 013436 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGDESGHLIYSGS-DDNLCK 295 (443)
Q Consensus 222 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~l~~~~-~d~~i~ 295 (443)
.....++++++++.+++...++.|.+||+.+++....+.... .....+++ .++.++++.. .++.|.
T Consensus 84 ------~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~ 155 (328)
T 3dsm_A 84 ------TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRIL 155 (328)
T ss_dssp ------SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEE
T ss_pred ------CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEE
Confidence 157789999888544444378999999999998877765433 14566777 3444444443 488999
Q ss_pred EEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC----------CCEEEEeCCCCCCccccCCcccccCccc
Q 013436 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----------QAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (443)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (443)
++|.. +++.+..+... .....++++|+|++++++..+ +.|.++|..+.
T Consensus 156 viD~~----t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~----------------- 213 (328)
T 3dsm_A 156 KIDTE----TDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF----------------- 213 (328)
T ss_dssp EEETT----TTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-----------------
T ss_pred EEECC----CCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-----------------
Confidence 99998 66766666532 345678999999987777655 78999999873
Q ss_pred ccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhh
Q 013436 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQIL 433 (443)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~ 433 (443)
+....+..... ... ..++++||+++|+++.. .|++||..++++.
T Consensus 214 -----------------~v~~~~~~~~g-~~p----~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 214 -----------------TVEKQFKFKLG-DWP----SEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp -----------------EEEEEEECCTT-CCC----EEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred -----------------eEEEEEecCCC-CCc----eeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 33333332110 011 22346668888888765 8999999888753
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.47 E-value=7.7e-11 Score=105.15 Aligned_cols=198 Identities=11% Similarity=0.037 Sum_probs=131.1
Q ss_pred ceEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee
Q 013436 126 RAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 126 ~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
-.-+..|+|++ .++++...++.|..||..++... .. . ....+.+++++++++++++ . +..|.+||..+++..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~---~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-T---MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-E---CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-e---CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 45578899965 56666667889999999887442 11 1 2246899999999995444 4 567999999887654
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-----------CCeEEEEECCCCeeeEEeeccCCCeE
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVN 273 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~ 273 (443)
........ .....+.+++++|+|+++++... .+.|+.+|.. ++ +..+..+....+
T Consensus 87 ~~~~~~~~------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~~~~~~~~~pn 152 (297)
T 3g4e_A 87 VLATVDND------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HH-VKKYFDQVDISN 152 (297)
T ss_dssp EEEECCTT------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SC-EEEEEEEESBEE
T ss_pred EEEecCCC------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CC-EEEEeecccccc
Confidence 33221100 11235889999999996665432 2345555543 33 233334445678
Q ss_pred EEEEeCCCCCEE-EEeeCCCeEEEEecccCCCCCc-----eeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 274 TVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGK-----PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 274 ~i~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.++|+ ++++.| ++.+.++.|.+||+... .+. ....+..+......++++++|++.++...++.|.+||..+
T Consensus 153 gi~~s-pdg~~lyv~~~~~~~i~~~~~d~~--~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 153 GLDWS-LDHKIFYYIDSLSYSVDAFDYDLQ--TGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEEEC-TTSCEEEEEEGGGTEEEEEEECTT--TCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred ceEEc-CCCCEEEEecCCCCcEEEEeccCC--CCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 99998 677655 55566789999987311 222 2223333445678899999999888888888899999886
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=4.3e-10 Score=100.12 Aligned_cols=198 Identities=9% Similarity=-0.016 Sum_probs=139.4
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 202 (443)
....+..++++++|+++++...++.|..||.. +... .. ........+.++++.++++++++...++.|..+|.. ++
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY-PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee-cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence 34678999999999988877667889999988 5432 22 222223468999999999877776668899999987 54
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE-eeccCCCeEEEEEeCCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDES 281 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~ 281 (443)
..... ... ....+..+++.++++.+++...++.|..+|. +++.... ...+...+..+++. ++
T Consensus 136 ~~~~~-~~~--------------~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d-~~ 198 (300)
T 2qc5_A 136 IYEYD-LPN--------------KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSG-ND 198 (300)
T ss_dssp EEEEE-CSS--------------TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TT
T ss_pred EEEcc-CCC--------------CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEEC-CC
Confidence 43211 100 1125788999999996666666788999998 5544332 22344568899996 67
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCceee-eecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
+++.++....+.|.+||.. +.... .+..+...+.+++++++|+++++...++.|..||..
T Consensus 199 g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 199 GALWFVEIMGNKIGRITTT-----GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp SSEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCEEEEccCCCEEEEEcCC-----CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 8877776677789999973 22222 233345678999999999977777667889999873
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=3.5e-11 Score=111.36 Aligned_cols=281 Identities=14% Similarity=0.033 Sum_probs=168.9
Q ss_pred CCCCEEEEEECC-----CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE----------CCCeEEEEEC
Q 013436 134 ADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDV 198 (443)
Q Consensus 134 ~~~~~l~~g~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----------~dg~i~iwd~ 198 (443)
++++.+++.... +.|.++|..+++.+..+..... + .++++||+++|+++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~---P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL---P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS---C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC---C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 466666665543 6899999999977766554432 3 799999999888876 3678999999
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEEeeccCCCeEEEE
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 276 (443)
.+.+......+..... + ........+.|+|||++++++.. ++.|.+.|+.+++.+.++.... . ..
T Consensus 157 ~t~~vv~~I~v~g~~r---~------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~ 223 (426)
T 3c75_H 157 VTFLPIADIELPDAPR---F------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YH 223 (426)
T ss_dssp TTCCEEEEEEETTCCC---C------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EE
T ss_pred CCCcEEEEEECCCccc---c------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--ee
Confidence 9988765443320000 0 00001235799999999999874 5789999999999888876422 1 22
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCCceeee----ecCCCCCe-EEEEECCCCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----LMGHLEGI-TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
..|.....+++.+.||.+.+.+.. .++.... +.....++ ..+.+.+++..++..+..+.|.+.|+......
T Consensus 224 ~~p~g~~~~v~~~~dG~~~~V~~~----~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~ 299 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSLARVDFA----DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT 299 (426)
T ss_dssp EEEEETTEEEEEETTSSEEEEECC----TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred eccCCCcEEEEEcCCCCEEEEECC----CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE
Confidence 223444667777788888888874 3333211 11111121 23567888888777778889999998653311
Q ss_pred c--ccCC---cccccCcc---cccccCCCCCCcccCCC-----------CeeEEEEeccce--e--eeeeEEEecCCccC
Q 013436 352 A--SCNL---GFRSYEWD---YRWMDYPPQARDLKHPC-----------DQSVATYKGHSV--L--RTLIRCHFSPVYST 408 (443)
Q Consensus 352 ~--~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~--~--~~~~~~~~~~~~s~ 408 (443)
. .... ......+. ...+.+++++..+.... ...+..+..... . ..+-...++..|+|
T Consensus 300 v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~sp 379 (426)
T 3c75_H 300 FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQ 379 (426)
T ss_dssp ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECC
T ss_pred EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEcc
Confidence 0 0000 00000000 01123333333222211 123333332211 1 11112245566888
Q ss_pred Ccc-EEEEee-CCCeEEEEEccChhhhhHh
Q 013436 409 GQK-YIYTGS-HDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 409 d~~-~l~tg~-~dg~v~iwd~~~g~~~~~~ 436 (443)
||+ ++++.. .++.|.++|+.+++.+.++
T Consensus 380 Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 380 DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999 888888 5999999999999988765
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.42 E-value=1.2e-10 Score=104.31 Aligned_cols=204 Identities=11% Similarity=0.050 Sum_probs=131.8
Q ss_pred CCccccCCCCceEEEEECCCCC-EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 116 GPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~-~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
....+...........|+|+|+ +++++..++.|..|+.. +.. .... .....+..++++++|+++++...++.|.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~---~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLL---DATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEE---ESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEe---CCCCccceeeECCCCCEEEEECCCCEEE
Confidence 3444555556678899999998 56677778899999984 432 2211 2334588999999999666655667899
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEE----Eec-------------CCeEEEEECC
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GSS-------------DDCIYVYDLE 257 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~----~~~-------------dg~i~iwd~~ 257 (443)
+|+.. ++......... + .....+.++++.|+|+++++ |.. .+.|+.||..
T Consensus 111 ~~~~~-g~~~~~~~~~~---~---------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYA---G---------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EECTT-SCEEEEECEET---T---------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EECCC-CCEEEEEeccC---C---------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 99976 54332211110 0 00114667999999997776 332 3568888887
Q ss_pred CCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCC------CeEEEEecccCCCCCce--eeee-cCCCCCeEEEEECCCC
Q 013436 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKP--AGVL-MGHLEGITFIDSRGDG 328 (443)
Q Consensus 258 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~ 328 (443)
+++..... .....+.++|+ ++++.|+.+... +.|.+||+. .... ...+ .........++++++|
T Consensus 178 ~g~~~~~~--~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~----~~~l~~~~~~~~~~~~~pdgi~~d~~G 250 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWR----DGALHDRRHFASVPDGLPDGFCVDRGG 250 (305)
T ss_dssp SCCCEEEE--EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEE----TTEEEEEEEEECCSSSCCCSEEECTTS
T ss_pred CCcEEEEe--cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEec----CCCccCCeEEEECCCCCCCeEEECCCC
Confidence 77644333 44567889997 788877776654 789999986 2221 1111 1123345678899999
Q ss_pred CEEEEEeCCCCEEEEeCC
Q 013436 329 RYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~ 346 (443)
++.++. .++ |.+|+..
T Consensus 251 ~lwv~~-~~g-v~~~~~~ 266 (305)
T 3dr2_A 251 WLWSSS-GTG-VCVFDSD 266 (305)
T ss_dssp CEEECC-SSE-EEEECTT
T ss_pred CEEEec-CCc-EEEECCC
Confidence 955544 444 9999874
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.41 E-value=7.7e-12 Score=114.11 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=112.8
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCe
Q 013436 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~ 250 (443)
++..+++++...++++|+.++ +.+|++.................... .+.. |..++| |+.+|+++ .++.
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~------~lp~-V~~l~f--d~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK------EIPD-VIFVCF--HGDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE------ECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe------eCCC-eeEEEE--CCCEEEEE-cCCc
Confidence 488899999999999999985 66698764431000000000000000 1223 999999 89999999 8899
Q ss_pred EEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCE
Q 013436 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (443)
Q Consensus 251 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 330 (443)
|++||+++.........|...+.++.+.+++ +++++.||.|.+||+. .+.... +...|++++|+|+|
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~----~~~~~~----~~~~Vs~v~WSpkG-- 174 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLR----TKSTKQ----LAQNVTSFDVTNSQ-- 174 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETT----TCCEEE----EEESEEEEEECSSE--
T ss_pred EEEEEchhhhccCccceeecceeeEEecCCC---EEEEECCCCEEEEEcc----CCcccc----ccCCceEEEEcCCc--
Confidence 9999998877666677788889988886443 8888999999999997 444432 45689999999999
Q ss_pred EEEEeCCCCEEEEeCCC
Q 013436 331 LISNGKDQAIKLWDIRK 347 (443)
Q Consensus 331 l~s~~~dg~i~iwd~~~ 347 (443)
++.+..||.+++|+...
T Consensus 175 ~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 175 LAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp EEEEETTSCEEEEEEET
T ss_pred eEEEEcCCcEEEEcCCC
Confidence 78899999999998876
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.41 E-value=1.1e-10 Score=104.97 Aligned_cols=200 Identities=12% Similarity=0.133 Sum_probs=135.9
Q ss_pred CCCceEEEEECCC-CCEEEEEECCCeEEEEECCCCeEEEE-eeecC-CccceEEEEEECCCCCeEEEEECC---------
Q 013436 123 TTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQK-DILAK-SLRWTVTDTSLSPDQRHLVYASMS--------- 190 (443)
Q Consensus 123 h~~~v~~~~~s~~-~~~l~~g~~d~~i~iwd~~~~~~~~~-~~~~~-~~~~~v~~i~~s~~~~~l~~~~~d--------- 190 (443)
+...+.+++++++ |+++++. ..+.|.+||.. ++.... ..... .....+.++++.++++++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4567999999999 7655554 44579999998 643321 11111 112348899999999877766554
Q ss_pred ------CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEe----CCCCEEEEE-ecCCeEEEEECC-C
Q 013436 191 ------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS----TDGRELVAG-SSDDCIYVYDLE-A 258 (443)
Q Consensus 191 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~l~~~-~~dg~i~iwd~~-~ 258 (443)
+.|..|+.. ++...... +......++|+ |+++.++++ ..++.|.+||+. +
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~-----------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~ 208 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDT-----------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP 208 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEE-----------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET
T ss_pred cccCCCCeEEEECCC-CCEEEecc-----------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC
Confidence 466666654 43322111 11145778999 999766555 567899999986 4
Q ss_pred Cee-----eEEeeccC-CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEE-
Q 013436 259 NKL-----SLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL- 331 (443)
Q Consensus 259 ~~~-----~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l- 331 (443)
++. ...+..+. ..+..+++. ++++++++...++.|.+||.. +++.+..+..+...+.+++++|+++.|
T Consensus 209 g~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 209 AKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPD----GGQPKMRIRCPFEKPSNLHFKPQTKTIF 283 (314)
T ss_dssp TEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTT----CBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred CccccceEEEECCCCCCCCCCceEEC-CCCCEEEEEcCCCEEEEEcCC----CCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence 432 22233333 567889996 788888888788999999986 466666666666789999999999955
Q ss_pred EEEeCCCCEEEEeCCC
Q 013436 332 ISNGKDQAIKLWDIRK 347 (443)
Q Consensus 332 ~s~~~dg~i~iwd~~~ 347 (443)
++...++.|..|++..
T Consensus 284 v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 284 VTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEETTTTEEEEEECSS
T ss_pred EEeCCCCeEEEEeCCC
Confidence 4555568899999875
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.41 E-value=2.8e-11 Score=122.17 Aligned_cols=190 Identities=15% Similarity=0.112 Sum_probs=122.6
Q ss_pred CCCCCEEEEEECCCe---EEEE--ECC---CCeEEEEee----ecCCccceEEEEEECCCCCeEEEEECC-----CeEEE
Q 013436 133 SADGSLFVAGFQASQ---IRIY--DVE---RGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHI 195 (443)
Q Consensus 133 s~~~~~l~~g~~d~~---i~iw--d~~---~~~~~~~~~----~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~i 195 (443)
+|+|++++....++. -.|| +.. .+. ..... ...++...+..++|||||++|+.++.+ ..|++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTK-GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCC-CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCC-CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 389998887665432 4445 443 332 11111 122344568899999999999987654 36999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCe--------------EEEEECCCCee
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC--------------IYVYDLEANKL 261 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~--------------i~iwd~~~~~~ 261 (443)
||+.+++..... .. ...+..++|+|| +.|+.++.++. |++|++.++..
T Consensus 194 ~dl~tg~~~~~~-~~----------------~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~ 255 (741)
T 1yr2_A 194 VGVADGKPLADE-LK----------------WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS 255 (741)
T ss_dssp EETTTCCEEEEE-EE----------------EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG
T ss_pred EECCCCCCCCcc-CC----------------CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch
Confidence 999998764321 00 012346899999 98888876553 99999987652
Q ss_pred --eEEee--ccCCCeEEEEEeCCCCCEEEEeeCCC-----eEEEEecccCCCCC--ceeeeecCCCCCeEEEEECCCCCE
Q 013436 262 --SLRIL--AHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKG--KPAGVLMGHLEGITFIDSRGDGRY 330 (443)
Q Consensus 262 --~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~ 330 (443)
...+. .+...+..+.|+ ++|++|+..+.++ .|.+||+. .+ .+...+..+...+.... +|+|+.
T Consensus 256 ~~~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~~-~~dg~~ 329 (741)
T 1yr2_A 256 ADQPVFATPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVT----NGKIGPVTALIPDLKAQWDFV-DGVGDQ 329 (741)
T ss_dssp GCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEE----TTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred hCEEEeccCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECC----CCCCcccEEecCCCCceEEEE-eccCCE
Confidence 22222 233358899997 8888887776543 89999987 44 21445555555555553 488988
Q ss_pred EEEEeCC----CCEEEEeCCC
Q 013436 331 LISNGKD----QAIKLWDIRK 347 (443)
Q Consensus 331 l~s~~~d----g~i~iwd~~~ 347 (443)
|+..+.+ +.|.+||+.+
T Consensus 330 l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 330 LWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEEECTTCTTCEEEEEECSS
T ss_pred EEEEECCCCCCCEEEEEeCCC
Confidence 8877753 4499999876
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.40 E-value=6.7e-10 Score=100.42 Aligned_cols=197 Identities=13% Similarity=0.109 Sum_probs=129.4
Q ss_pred eEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceec
Q 013436 127 AYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (443)
Q Consensus 127 v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (443)
.....|+|++ .++++...++.|..||..++... .. .. ...+.+++|+|+++++++. .+ .|.+||..+++...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~---~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-AL---PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-EC---SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE-EC---CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence 4677899975 55666667889999999887432 21 11 2368999999999876654 44 49999998877543
Q ss_pred cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec------CCeEEEEECCCCeeeEEeeccCCCeEEEEEeC
Q 013436 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (443)
...... ......+.+++++|+|+++++... .+.|+.+| +++.. .+..+....+.++|+
T Consensus 124 ~~~~~~------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s- 187 (326)
T 2ghs_A 124 HAELES------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFS- 187 (326)
T ss_dssp EECSST------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEEC-
T ss_pred EeeCCC------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEc-
Confidence 321110 011236889999999996665432 25677777 45433 333344567899997
Q ss_pred CCCCEEEE-eeCCCeEEEEecc--cC-CCC-CceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 280 ESGHLIYS-GSDDNLCKVWDRR--CL-NVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 280 ~~~~~l~~-~~~d~~i~iwd~~--~~-~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
++++.++. .+.++.|.+||+. .. ... ......+.........++++++|.++++...++.|.+||..
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 77775544 4567899999975 21 111 11222333344567889999999988877777889999873
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.35 E-value=1.1e-09 Score=97.65 Aligned_cols=189 Identities=9% Similarity=0.036 Sum_probs=127.5
Q ss_pred CCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecC-CccceEEEEEECCCCCeEEEEECC---------Ce
Q 013436 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMS---------PI 192 (443)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~~~~~d---------g~ 192 (443)
+...+.+++++++|+++++. ++.|.+||..++.......... .....+.+++++|+|+++++.... ..
T Consensus 52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 45679999999999955543 5689999998874332211111 123458999999999966654321 23
Q ss_pred EEEEECCCC-ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEE-EecCCeEEEEEC--CCCeee-----E
Q 013436 193 VHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDL--EANKLS-----L 263 (443)
Q Consensus 193 i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~--~~~~~~-----~ 263 (443)
-.+|.+... +...... .......++|+|+++.|+. .+.++.|.+||+ .++... .
T Consensus 130 ~~l~~~d~~g~~~~~~~-----------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~ 192 (297)
T 3g4e_A 130 GALYSLFPDHHVKKYFD-----------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVY 192 (297)
T ss_dssp EEEEEECTTSCEEEEEE-----------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEE
T ss_pred cEEEEEECCCCEEEEee-----------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEE
Confidence 455555432 2211111 1114578999999987654 455789999987 455421 2
Q ss_pred EeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEEC-CCCCEEEEEe
Q 013436 264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNG 335 (443)
Q Consensus 264 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~ 335 (443)
.+..+...+..+++. +++++.++...++.|.+||.. +++.+..+..+...+++++|. |+++.|..++
T Consensus 193 ~~~~~~~~p~g~~~d-~~G~lwva~~~~~~v~~~d~~----tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 193 KLEKEEQIPDGMCID-AEGKLWVACYNGGRVIRLDPV----TGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp ECCGGGCEEEEEEEB-TTSCEEEEEETTTEEEEECTT----TCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred ECCCCCCCCCeeEEC-CCCCEEEEEcCCCEEEEEcCC----CceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 222344567889996 788888888788899999987 688888887777789999998 7877665444
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.33 E-value=8.1e-10 Score=101.52 Aligned_cols=192 Identities=11% Similarity=-0.014 Sum_probs=122.0
Q ss_pred ECCCCCEEEEEEC--CC---eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE----------CCCeEEEE
Q 013436 132 FSADGSLFVAGFQ--AS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIV 196 (443)
Q Consensus 132 ~s~~~~~l~~g~~--d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----------~dg~i~iw 196 (443)
..|+++++++... .. .|.+||..+++.+..... + .. . .++++||+++++++. .++.|.+|
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~--g-~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--G-FL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC--C-CC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 3467777666643 22 889999999876544322 1 22 2 899999999999886 36789999
Q ss_pred ECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEE-eeccCCCeE
Q 013436 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLR-ILAHTSDVN 273 (443)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~ 273 (443)
|..+.+............ + . +...-..++|+|||++|++++. ++.|.++| .+++.+.. +... .
T Consensus 103 D~~t~~~~~~i~~~~~~~---~----~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~--- 168 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPR---F----D--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T--- 168 (373)
T ss_pred ECCCCcEEEEEECCCccc---c----c--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---
Confidence 998876654333220000 0 0 0012347899999999999874 47899999 99988777 5422 1
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec-----CCCCC-eEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-----GHLEG-ITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
++.+.|.....+++.+.||.+.++|. ... ...... ....+ .....+.+++..++..+..+.+.+.|+..
T Consensus 169 ~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~ 243 (373)
T 2mad_H 169 CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG----AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred eEEEEeCCCceEEEEcCCCCEEEEEC-CCc----EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccC
Confidence 23444455667778888999999998 332 221110 11112 22345666655554444778999999875
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=3.3e-09 Score=95.84 Aligned_cols=185 Identities=12% Similarity=0.025 Sum_probs=122.7
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecC--CccceEEEEEECCCCCeEEEEEC------CCeEEE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK--SLRWTVTDTSLSPDQRHLVYASM------SPIVHI 195 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~~~~~------dg~i~i 195 (443)
...+.+++|+++|+++++. . ..|.+||..++.... ..... .....+.+++++|+|+++++... .+.|..
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence 4679999999999877765 4 459999998875432 21111 11246899999999987665432 245555
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEE-ecCCeEEEEECC--CC-ee-----eEEee
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLE--AN-KL-----SLRIL 266 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~--~~-~~-----~~~~~ 266 (443)
++ +++...... .......++|+|+++.++.+ +.++.|.+||+. ++ +. ...+.
T Consensus 166 ~~--~g~~~~~~~-----------------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~ 226 (326)
T 2ghs_A 166 VA--KGKVTKLFA-----------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST 226 (326)
T ss_dssp EE--TTEEEEEEE-----------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred Ee--CCcEEEeeC-----------------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC
Confidence 55 443322111 01145689999999876555 456899999986 55 32 22222
Q ss_pred ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEEC-CCCCEEEEEeC
Q 013436 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGK 336 (443)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~ 336 (443)
.....+..+++. +++++.++...++.|.+||. .++.+..+..+...+++++|+ ++++.|+.++.
T Consensus 227 ~~~~~p~gi~~d-~~G~lwva~~~~~~v~~~d~-----~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 227 GIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDT-----DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp TSSSEEEEEEEC-TTSCEEEEEETTTEEEEECT-----TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCCCCCeeEEC-CCCCEEEEEeCCCEEEEECC-----CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 234556788885 78887777767789999997 345566666666679999998 88877654443
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.30 E-value=5e-10 Score=102.08 Aligned_cols=211 Identities=10% Similarity=-0.008 Sum_probs=133.0
Q ss_pred CceEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEEEEee----ecCCccceEEEEEECCCCCeEEEEEC-----CCeE
Q 013436 125 SRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASM-----SPIV 193 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~--d~~i~iwd~~~~~~~~~~~----~~~~~~~~v~~i~~s~~~~~l~~~~~-----dg~i 193 (443)
..+..++++|+|+++++... ++.++||.+.++. +.... ....+-..+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 57899999999999888642 3435566554553 22111 11223456999999999876665433 5789
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEE-EEEe---cCCeEEEEECCCCeeeEEeeccC
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGS---SDDCIYVYDLEANKLSLRILAHT 269 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~---~dg~i~iwd~~~~~~~~~~~~~~ 269 (443)
.+||+.+++........... ..+...+..+++++++..+ ++.. .++.|.+||+.+++....+..|.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~----------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPI----------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp EEEETTTTEEEEEEECCTTT----------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred EEEECCCCeEEEEEECChhh----------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence 99999988754433321100 0112246789999865554 4444 57889999998887655443321
Q ss_pred -----------------------------CCeEEEEEeCCCCCEEEEeeCCC-eEEEEecccCCC---C-Cceee--eec
Q 013436 270 -----------------------------SDVNTVCFGDESGHLIYSGSDDN-LCKVWDRRCLNV---K-GKPAG--VLM 313 (443)
Q Consensus 270 -----------------------------~~v~~i~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~---~-~~~~~--~~~ 313 (443)
..++.|+++ ++++.|+.+..++ .+..++...... . .+... ...
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s-~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLD-AENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY 244 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEEC-TTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE
T ss_pred cccccccceeECCEEEEeccCCCceeceecccceeEec-cCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec
Confidence 235889997 7888888777665 555554321100 0 00000 111
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 314 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
++......++++++|.++++...++.|.+||..+
T Consensus 245 g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 245 SEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT
T ss_pred ccCCCCceEEECCCCCEEEEccCCCeEEEEECCC
Confidence 3334556789999999999998899999999843
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.28 E-value=5.6e-10 Score=99.95 Aligned_cols=194 Identities=14% Similarity=0.041 Sum_probs=127.5
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCC-ccceEEEEEECCCCCeEEE----EEC--
Q 013436 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVY----ASM-- 189 (443)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~----~~~-- 189 (443)
...+..+...+..++++++|+++++...++.|.+|+.+ +........... ....+.++++.|+|+++++ |..
T Consensus 78 ~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~ 156 (305)
T 3dr2_A 78 VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKP 156 (305)
T ss_dssp EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCG
T ss_pred EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccc
Confidence 34455566779999999999977766566889999986 432221111111 1124678999999997776 332
Q ss_pred -----------CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC------CeEE
Q 013436 190 -----------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIY 252 (443)
Q Consensus 190 -----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d------g~i~ 252 (443)
.+.|..+|..+++..... ... ....++|+||++.|+++... +.|+
T Consensus 157 ~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~---------------~p~gl~~spdg~~lyv~~~~~~~~~~~~i~ 218 (305)
T 3dr2_A 157 SQGCPADPELAHHSVYRLPPDGSPLQRMA---DLD---------------HPNGLAFSPDEQTLYVSQTPEQGHGSVEIT 218 (305)
T ss_dssp GGSCCCCCSSSCEEEEEECSSSCCCEEEE---EES---------------SEEEEEECTTSSEEEEEECCC---CCCEEE
T ss_pred ccccccccccCCCeEEEEcCCCCcEEEEe---cCC---------------CCcceEEcCCCCEEEEEecCCcCCCCCEEE
Confidence 245777777666554332 110 45679999999988877665 6899
Q ss_pred EEECCCCeee--EEe-eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCC
Q 013436 253 VYDLEANKLS--LRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (443)
Q Consensus 253 iwd~~~~~~~--~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 329 (443)
+||+..+... ..+ .........+++. +++++.+ +..+ .|.+||. .++.+..+..+. .+..++|.++++
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~~pdgi~~d-~~G~lwv-~~~~-gv~~~~~-----~g~~~~~~~~~~-~~~~~~f~~d~~ 289 (305)
T 3dr2_A 219 AFAWRDGALHDRRHFASVPDGLPDGFCVD-RGGWLWS-SSGT-GVCVFDS-----DGQLLGHIPTPG-TASNCTFDQAQQ 289 (305)
T ss_dssp EEEEETTEEEEEEEEECCSSSCCCSEEEC-TTSCEEE-CCSS-EEEEECT-----TSCEEEEEECSS-CCCEEEECTTSC
T ss_pred EEEecCCCccCCeEEEECCCCCCCeEEEC-CCCCEEE-ecCC-cEEEECC-----CCCEEEEEECCC-ceeEEEEeCCCC
Confidence 9998765411 111 1123445678885 7888544 4444 5999997 456666665544 588999999998
Q ss_pred EEEEEeCCC
Q 013436 330 YLISNGKDQ 338 (443)
Q Consensus 330 ~l~s~~~dg 338 (443)
.|..++.++
T Consensus 290 ~L~it~~~~ 298 (305)
T 3dr2_A 290 RLFITGGPC 298 (305)
T ss_dssp EEEEEETTE
T ss_pred EEEEEcCCe
Confidence 888877764
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=6.3e-10 Score=101.24 Aligned_cols=98 Identities=9% Similarity=-0.064 Sum_probs=69.8
Q ss_pred eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE----------CCCeEEEEECCCCceeccccceecccCc
Q 013436 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDVGSGTMESLANVTEIHDGL 216 (443)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 216 (443)
+|.++|..+++.+..+..... + .+.++||+++++++. .++.|.+||+.+++............
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~---P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-- 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL---S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-- 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT---C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--
T ss_pred eEEEEECCCCeEEEEEeCCCC---C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--
Confidence 888999999987776544433 3 699999999999886 36789999999998765544320000
Q ss_pred eeeccCCCCceecEEEEEEeCCCCEEEEEec--CCeEEE--EECCC
Q 013436 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYV--YDLEA 258 (443)
Q Consensus 217 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i--wd~~~ 258 (443)
+.. ......++++|||++++++.. +..|.+ +|+.+
T Consensus 120 -~~~------g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 120 -FSV------GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp -CCB------SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred -ccc------CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 000 002335899999999999875 467888 99876
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.23 E-value=3.7e-09 Score=96.76 Aligned_cols=200 Identities=14% Similarity=0.013 Sum_probs=129.7
Q ss_pred EEC--CCCCEEEEEE-CCCeEEEEECCCC----eEEEEee---ec-CCccceEEEEEECCCCCeEEEEECC------CeE
Q 013436 131 QFS--ADGSLFVAGF-QASQIRIYDVERG----WKIQKDI---LA-KSLRWTVTDTSLSPDQRHLVYASMS------PIV 193 (443)
Q Consensus 131 ~~s--~~~~~l~~g~-~d~~i~iwd~~~~----~~~~~~~---~~-~~~~~~v~~i~~s~~~~~l~~~~~d------g~i 193 (443)
.++ +++++|++.+ .+++|.|+|+.+. +...... .. .........+..+|++ .++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 447 8888877654 5778999999754 2222221 00 0011235667889999 66665544 689
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe-------------------cCCeEEEE
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------------------SDDCIYVY 254 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-------------------~dg~i~iw 254 (443)
.++|..+.+............. --..+-|+|+++.+++.. ....|.+|
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~-------------~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQY-------------LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCC-------------CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred EEEECCCCeEEEEEccCCCCcc-------------ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 9999999987766553322111 233578899999888874 36889999
Q ss_pred ECCCCeeeEEeecc--CCCeEEEEE--eCCCCCEEEEee------CCCeEEEEecccCCCCCceeeee--cC--------
Q 013436 255 DLEANKLSLRILAH--TSDVNTVCF--GDESGHLIYSGS------DDNLCKVWDRRCLNVKGKPAGVL--MG-------- 314 (443)
Q Consensus 255 d~~~~~~~~~~~~~--~~~v~~i~~--~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~--~~-------- 314 (443)
|+.+++.+.++... ......+.| + ++++++++++ .+++|.+|..... ..+....+ ..
T Consensus 234 D~~~~k~~~tI~vg~~g~~P~~i~f~~~-Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g--~~~~~~vIdi~~~~v~~~lp 310 (462)
T 2ece_A 234 DLRKRKRIHSLTLGEENRMALELRPLHD-PTKLMGFINMVVSLKDLSSSIWLWFYEDG--KWNAEKVIEIPAEPLEGNLP 310 (462)
T ss_dssp ETTTTEEEEEEESCTTEEEEEEEEECSS-TTCCEEEEEEEEETTTCCEEEEEEEEETT--EEEEEEEEEECCEECCSSCC
T ss_pred ECCCCcEeeEEecCCCCCccceeEeeEC-CCCCEEEEEEeeeccCCCceEEEEEecCC--ceeEEEEEeCCCcccccccc
Confidence 99999888877642 123445555 6 7777777666 5668877665421 11111111 00
Q ss_pred --------CCCCeEEEEECCCCCEEEEEeC-CCCEEEEeCCC
Q 013436 315 --------HLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRK 347 (443)
Q Consensus 315 --------~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 347 (443)
-......|.+++||++|.++.. .+.|.+||+..
T Consensus 311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 311 EILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp GGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred ccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 0245678999999999887765 78999999964
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.22 E-value=2.3e-12 Score=118.64 Aligned_cols=185 Identities=13% Similarity=0.187 Sum_probs=102.8
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 013436 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (443)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 259 (443)
++..+++++.|+.|+.||..+++..-.... . ++.+..+..++..+++++.||.|+.||..++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-----------------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG 69 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-----------------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN 69 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-----------------CSCCCC-----CCEEECTTTCCEEEC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-----------------CceecceEcCCCEEEEeCCCCEEEEEECCCC
Confidence 577899999999999999999987654432 1 2223334456777888889999999999999
Q ss_pred eeeEEeeccCCC-eE-EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q 013436 260 KLSLRILAHTSD-VN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (443)
Q Consensus 260 ~~~~~~~~~~~~-v~-~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 337 (443)
+.+..+..+... +. +..+ ..+..+++++.|+.|+.||.. +++.+..+..+. ...++|++..+++++.|
T Consensus 70 ~~~w~~~~~~~~~~~~sp~~--~~~~~v~~g~~dg~v~a~D~~----tG~~~w~~~~~~----~~~~~p~~~~v~~~~~d 139 (369)
T 2hz6_A 70 EGLTKLPFTIPELVQASPCR--SSDGILYMGKKQDIWYVIDLL----TGEKQQTLSSAF----ADSLSPSTSLLYLGRTE 139 (369)
T ss_dssp CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEE
T ss_pred ceeeeeeccCccccccCceE--ecCCEEEEEeCCCEEEEEECC----CCcEEEEecCCC----cccccccCCEEEEEecC
Confidence 877666433211 10 1111 134567888899999999998 777777665543 23456788889999999
Q ss_pred CCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCc---cEEE
Q 013436 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ---KYIY 414 (443)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~ 414 (443)
+.|+.||.++++..... ..+. ...+.++++. ..++
T Consensus 140 g~v~a~d~~tG~~~W~~----------------------------------~~~~--------~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 140 YTITMYDTKTRELRWNA----------------------------------TYFD--------YAASLPEDDVDYKMSHF 177 (369)
T ss_dssp EEEECCCSSSSSCCCEE----------------------------------EEEE--------ECCBCCCCCTTCCCCEE
T ss_pred CEEEEEECCCCCEEEeE----------------------------------eccc--------ccCccccCCccccceEE
Confidence 99999999986543321 1110 1223333332 4577
Q ss_pred EeeCCCeEEEEEccChhhhh
Q 013436 415 TGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 415 tg~~dg~v~iwd~~~g~~~~ 434 (443)
+++.||.|+.||..+|+++-
T Consensus 178 ~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 178 VSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp EEETSCEEEEECTTTCCEEE
T ss_pred EECCCCEEEEEECCCCcEEE
Confidence 78889999999999888654
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.21 E-value=2.6e-09 Score=99.50 Aligned_cols=198 Identities=12% Similarity=0.134 Sum_probs=132.3
Q ss_pred EEECCCCCEEEEEECCC--eEEEEECCCCeEEEEeeec-CCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceecc
Q 013436 130 SQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (443)
Q Consensus 130 ~~~s~~~~~l~~g~~d~--~i~iwd~~~~~~~~~~~~~-~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 206 (443)
++|+|+++.|+++..++ .|.+|+...+......... ......+.+++++|++..|+++..++.|+.||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 99999999999888765 7999998766443222111 11334577899999655566677788999999987754322
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEecCCeEEEEECCCCeeeEEeeccC---------------C
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHT---------------S 270 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~ 270 (443)
..... . + ..+ ..+...++|+|+ +.++++-..++.|+.|+.... +..+.++. .
T Consensus 256 ~~~~~-~-g-------~~~-~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~ 323 (409)
T 3hrp_A 256 KQLEL-S-G-------SLG-TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFA 323 (409)
T ss_dssp EECCC-C-S-------CCC-CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCS
T ss_pred ecccc-c-C-------CCC-CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeC
Confidence 11000 0 0 000 001128999995 555556566789999997654 33333322 3
Q ss_pred CeEEEEEeCCCCCEEEEee-CCCeEEEEecccCCCCCceeeeecCC---------------CCCeEEEEECCCCCEEEEE
Q 013436 271 DVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGH---------------LEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~s~ 334 (443)
....+++. ++++++++-. .++.|+.||+. .+. +..+.++ -.....+++++++.++++-
T Consensus 324 ~P~gia~d-~dG~lyvad~~~~~~I~~~~~~----~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad 397 (409)
T 3hrp_A 324 QPNGMTVD-EDGNFYIVDGFKGYCLRKLDIL----DGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE 397 (409)
T ss_dssp SEEEEEEC-TTCCEEEEETTTTCEEEEEETT----TTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred CCeEEEEe-CCCCEEEEeCCCCCEEEEEECC----CCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence 47899996 7788777777 88999999975 443 3333333 2457899999999888888
Q ss_pred eCCCCEEEEeC
Q 013436 335 GKDQAIKLWDI 345 (443)
Q Consensus 335 ~~dg~i~iwd~ 345 (443)
..++.|+.+++
T Consensus 398 ~~n~~Ir~i~~ 408 (409)
T 3hrp_A 398 AWGKAIRKYAV 408 (409)
T ss_dssp STTCEEEEEEE
T ss_pred CCCCeEEEEEe
Confidence 88888988765
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.13 E-value=4.7e-09 Score=104.41 Aligned_cols=288 Identities=11% Similarity=0.022 Sum_probs=153.7
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECC---CCCeEEEEE------CCCeEEEEECCCCceec
Q 013436 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYAS------MSPIVHIVDVGSGTMES 205 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~---~~~~l~~~~------~dg~i~iwd~~~~~~~~ 205 (443)
++..|++++.|+.|..+|..+|+.+-......... ....+..+| ++ .+++++ .++.|..||..+++..-
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~-~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHK-RSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTT-SCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCC-CCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 35678888899999999999997776544320100 001111122 44 444443 36899999999998754
Q ss_pred cccceecccCcee-------eccCCC--------CceecEEEEEEeCCCCEEEEEecCCe-------------------E
Q 013436 206 LANVTEIHDGLDF-------SAADDG--------GYSFGIFSLKFSTDGRELVAGSSDDC-------------------I 251 (443)
Q Consensus 206 ~~~~~~~~~~~~~-------~~~~~~--------~~~~~i~~l~~~~~~~~l~~~~~dg~-------------------i 251 (443)
............+ ....-. +.......++++|+...+++++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 3321110000000 000000 00011125788998889999887764 9
Q ss_pred EEEECCCCeeeEEeec--cC-------CCeEEEEEeCCCCC---EEEEeeCCCeEEEEecccCCCCCceeeeecCCC---
Q 013436 252 YVYDLEANKLSLRILA--HT-------SDVNTVCFGDESGH---LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL--- 316 (443)
Q Consensus 252 ~iwd~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--- 316 (443)
..+|..+++.+..+.. |. .++...... .+++ .++.++.+|.++++|.+ +++.+....-..
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRA----TGELLSAKGIVPQSW 352 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCSS
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECC----CCCEecccccccccc
Confidence 9999999998877764 21 112222221 2444 78899999999999998 666653221000
Q ss_pred -------------------------C-----------CeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccc
Q 013436 317 -------------------------E-----------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (443)
Q Consensus 317 -------------------------~-----------~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (443)
. .-..++++|+..++++...+....++....... .........
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPK-RNPFKSMYQ 431 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCC-CCSCTTSCC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccc-ccccccccc
Confidence 0 011268889888888877766666654433100 000000000
Q ss_pred cCcccccccC---------CCC-C--CcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEcc
Q 013436 361 YEWDYRWMDY---------PPQ-A--RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (443)
Q Consensus 361 ~~~~~~~~~~---------~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~ 428 (443)
.......+.. ++. + .-+....++.+-.+..+... +...++..+.++++|+.||.|+.||..
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-------~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-------NGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-------CCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-------cCccceECCCEEEEECCCCcEEEEECC
Confidence 0000000000 000 0 00111123333333333211 111233467889999999999999999
Q ss_pred ChhhhhHhH
Q 013436 429 SIQILFCRQ 437 (443)
Q Consensus 429 ~g~~~~~~~ 437 (443)
+|+++..++
T Consensus 505 tG~~lw~~~ 513 (689)
T 1yiq_A 505 TGEKLWEQP 513 (689)
T ss_dssp TCCEEEEEE
T ss_pred CCccceeee
Confidence 999886553
No 223
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.13 E-value=5e-09 Score=95.20 Aligned_cols=214 Identities=18% Similarity=0.202 Sum_probs=136.5
Q ss_pred EEECCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeeecCCc----cceEEEEEECCCCCeEEEEEC--CCeE
Q 013436 130 SQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYASM--SPIV 193 (443)
Q Consensus 130 ~~~s~~~~~l~~g~----------~d~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~i~~s~~~~~l~~~~~--dg~i 193 (443)
++++|||++++++. .++.|.+||..+++.+..+....+. ......++|+|||++++++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 99999999888775 3578999999999777665433210 112456899999999998874 6899
Q ss_pred EEEECCCCceeccccceec---------------ccCc-eeeccCCCCce------------ecEE-EEEEe-CCCCEEE
Q 013436 194 HIVDVGSGTMESLANVTEI---------------HDGL-DFSAADDGGYS------------FGIF-SLKFS-TDGRELV 243 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~------------~~i~-~l~~~-~~~~~l~ 243 (443)
.++|+.+++.......... .++. .+......+.. .++. ...|. ++|+++
T Consensus 163 sVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~- 241 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV- 241 (386)
T ss_dssp EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE-
T ss_pred EEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE-
Confidence 9999999987655433210 0000 00000000110 0111 12443 466544
Q ss_pred EEecCCeEEEEECCCCe--eeEEee----------ccCCCeEEEEEeCCCCCEEEEeeC----------CCeEEEEeccc
Q 013436 244 AGSSDDCIYVYDLEANK--LSLRIL----------AHTSDVNTVCFGDESGHLIYSGSD----------DNLCKVWDRRC 301 (443)
Q Consensus 244 ~~~~dg~i~iwd~~~~~--~~~~~~----------~~~~~v~~i~~~~~~~~~l~~~~~----------d~~i~iwd~~~ 301 (443)
..+.+|.|++.|+.+.. ....+. ........++++ ++++.++.... .+.|.++|+.
T Consensus 242 ~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~-~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~- 319 (386)
T 3sjl_D 242 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH-RALDRIYLLVDQRDEWRHKTASRFVVVLDAK- 319 (386)
T ss_dssp EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE-TTTTEEEEEEEECCTTCTTSCEEEEEEEETT-
T ss_pred EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC-CCCCeEEEEeccccccccCCCCCEEEEEECC-
Confidence 45668999999997664 222222 012334457777 56666666532 2579999998
Q ss_pred CCCCCceeeeecCCCCCeEEEEECCCCC-EEEEE-eCCCCEEEEeCCCCCC
Q 013436 302 LNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISN-GKDQAIKLWDIRKMSS 350 (443)
Q Consensus 302 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~ 350 (443)
+.+.+..+..- ..+..|++++|++ +|+++ ..++.|.++|..+.+.
T Consensus 320 ---t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 320 ---TGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp ---TCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred ---CCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 78888777532 3678999999996 66654 4589999999998543
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.12 E-value=1.1e-11 Score=114.18 Aligned_cols=189 Identities=11% Similarity=-0.033 Sum_probs=104.2
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceeccc
Q 013436 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (443)
++..+++++.|+.|+.||..+|+.+.+... ..+.+..+..++..+++++.|+.|+.||..+++...........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~- 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE- 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-
Confidence 578899999999999999999977765433 23444445567778888889999999999888764332211100
Q ss_pred CceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeE
Q 013436 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 294 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i 294 (443)
.. ...++ +. ++..+++++.++.|+.||.++++.+..+..+. ...++ +.+..+++++.|+.|
T Consensus 82 -~~--------~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~-p~~~~v~~~~~dg~v 142 (369)
T 2hz6_A 82 -LV--------QASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLS-PSTSLLYLGRTEYTI 142 (369)
T ss_dssp -HH--------TTCSC----C------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEE
T ss_pred -cc--------ccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----ccccc-ccCCEEEEEecCCEE
Confidence 00 00011 11 34467788889999999999999887775543 23444 367788899999999
Q ss_pred EEEecccCCCCCceeeeecCCCCCeEEEEECCCC---CEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---RYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
+.||.+ +++.+..+..+. .....+.++. ..+++++.||.|+.||.++++.+...
T Consensus 143 ~a~d~~----tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 143 TMYDTK----TRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp ECCCSS----SSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred EEEECC----CCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 999998 666555443211 1223334332 45677888999999999987765544
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.11 E-value=1e-08 Score=101.89 Aligned_cols=289 Identities=13% Similarity=0.095 Sum_probs=153.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeeec-CCc-cceEEE-EEECCCCCeEEEEEC------CCeEEEEECCCCceec
Q 013436 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSL-RWTVTD-TSLSPDQRHLVYASM------SPIVHIVDVGSGTMES 205 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~-~~~-~~~v~~-i~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~ 205 (443)
++..|++++.|+.|..+|..+|+.+-..... ... ...+.. ... .+..+++++. ++.|+.+|..+++..-
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 4667888889999999999999777654432 100 011111 001 2344555443 6899999999998764
Q ss_pred cccceecccCcee----------ecc--CC----CCceecEEEEEEeCCCCEEEEEecCC-------------------e
Q 013436 206 LANVTEIHDGLDF----------SAA--DD----GGYSFGIFSLKFSTDGRELVAGSSDD-------------------C 250 (443)
Q Consensus 206 ~~~~~~~~~~~~~----------~~~--~~----~~~~~~i~~l~~~~~~~~l~~~~~dg-------------------~ 250 (443)
............+ ... .. .+.......++++|++..+++++.++ .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 4332211100000 000 00 00111123578899888888887664 5
Q ss_pred EEEEECCCCeeeEEeec--cC-------CCeEEEEEeCCCC---CEEEEeeCCCeEEEEecccCCCCCceeeeecCCC--
Q 013436 251 IYVYDLEANKLSLRILA--HT-------SDVNTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-- 316 (443)
Q Consensus 251 i~iwd~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-- 316 (443)
|..+|..+++.+..+.. |. ....-+... .++ ..++.++.+|.++++|.+ +++.+..+.-..
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~-~dG~~~~~l~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~ 359 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK-IAGKPRKVILHAPKNGFFFVLDRT----NGKFISAKNFVPVN 359 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCS
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecc-cCCcEeeEEEEECCCCEEEEEECC----CCCEeccccccccC
Confidence 99999999998877653 21 112222222 355 688999999999999998 677665443110
Q ss_pred ---------CCe------------------------EEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcccc-CCcccccC
Q 013436 317 ---------EGI------------------------TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC-NLGFRSYE 362 (443)
Q Consensus 317 ---------~~v------------------------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~ 362 (443)
..+ ..++++|++.++++...+-...++.......-... ........
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence 000 14678888888887766555555544310000000 00000000
Q ss_pred cccc--cccCC-C---CCCc--ccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 363 WDYR--WMDYP-P---QARD--LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 363 ~~~~--~~~~~-~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
+... ...+. + .+.. +....++.+-.+..... .++..+++++..++.++.||.|++||..+|+.+.
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-------~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP-------WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS-------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCC-------CcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 0000 00000 0 0000 00011222222221110 1222244467889999999999999999999887
Q ss_pred HhH
Q 013436 435 CRQ 437 (443)
Q Consensus 435 ~~~ 437 (443)
.++
T Consensus 513 ~~~ 515 (677)
T 1kb0_A 513 EAP 515 (677)
T ss_dssp EEE
T ss_pred eee
Confidence 654
No 226
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.10 E-value=5.5e-09 Score=96.65 Aligned_cols=215 Identities=19% Similarity=0.219 Sum_probs=137.9
Q ss_pred EEEECCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeeec-CC---ccceEEEEEECCCCCeEEEEEC--CCe
Q 013436 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KS---LRWTVTDTSLSPDQRHLVYASM--SPI 192 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~----------~d~~i~iwd~~~~~~~~~~~~~-~~---~~~~v~~i~~s~~~~~l~~~~~--dg~ 192 (443)
.++++|||++|+++. .++.|.++|..+++.+..+... .. .......++|+||+++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888875 3678999999998776655432 10 0112446899999999999875 578
Q ss_pred EEEEECCCCceeccccceec----ccC-ceeec----------cCCCCcee------------c-EEEEEEeCCCCEEEE
Q 013436 193 VHIVDVGSGTMESLANVTEI----HDG-LDFSA----------ADDGGYSF------------G-IFSLKFSTDGRELVA 244 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~----~~~-~~~~~----------~~~~~~~~------------~-i~~l~~~~~~~~l~~ 244 (443)
|.+.|+.+++.......... ..+ ..+.. ....++.. + ...+.+.+++..++.
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 99999999887654443211 000 00000 00000000 0 012356777777777
Q ss_pred EecCCeEEEEECCCCeee--EEeec----------cCCCeEEEEEeCCCCCEEEEeeC----------CCeEEEEecccC
Q 013436 245 GSSDDCIYVYDLEANKLS--LRILA----------HTSDVNTVCFGDESGHLIYSGSD----------DNLCKVWDRRCL 302 (443)
Q Consensus 245 ~~~dg~i~iwd~~~~~~~--~~~~~----------~~~~v~~i~~~~~~~~~l~~~~~----------d~~i~iwd~~~~ 302 (443)
.+..+.|.+.|+...... ..+.. .......++++ ++++.+++... ++.|.++|..
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s-~dg~rlyVa~~~~~~gthk~~s~~VsVID~~-- 358 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH-RQSDRIYLLVDQRDEWKHKAASRFVVVLNAE-- 358 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE-GGGTEEEEEEEECCTTCTTSCEEEEEEEETT--
T ss_pred EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc-CCCCEEEEEecccccccccCCCCEEEEEECC--
Confidence 777888899988655421 11110 01122236787 55555555432 3579999998
Q ss_pred CCCCceeeeecCCCCCeEEEEECCCCC-EEEEEe-CCCCEEEEeCCCCC
Q 013436 303 NVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNG-KDQAIKLWDIRKMS 349 (443)
Q Consensus 303 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~ 349 (443)
+.+.+..+... .....++|+||++ ++++.. .++.|.++|+.+.+
T Consensus 359 --T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 359 --TGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp --TCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred --CCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 77888777532 2478899999999 888777 58999999999954
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.10 E-value=1.8e-08 Score=91.71 Aligned_cols=218 Identities=9% Similarity=0.061 Sum_probs=136.5
Q ss_pred CCCCceEEEEECCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeeecC---CccceEEEEEECCCCCeEE-EEE---C
Q 013436 122 QTTSRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAK---SLRWTVTDTSLSPDQRHLV-YAS---M 189 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~g~~-----d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~i~~s~~~~~l~-~~~---~ 189 (443)
+|-..+..++++++|+++++-.. ++.|.+||+.+++.+....... .+...+..+++++++..+. +-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 46678999999999987776544 5789999999886554433211 1223468899998755554 444 5
Q ss_pred CCeEEEEECCCCceeccccce-e-c-------ccCceeeccCCCC----ceecEEEEEEeCCCCEEEEEecCC-eEEEEE
Q 013436 190 SPIVHIVDVGSGTMESLANVT-E-I-------HDGLDFSAADDGG----YSFGIFSLKFSTDGRELVAGSSDD-CIYVYD 255 (443)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~-~-~-------~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~dg-~i~iwd 255 (443)
++.|.+||+.+++........ . . ..+..+......+ ....+..++|+|+++.|+++...+ .|+.++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 789999999887754433210 0 0 0011110000000 012468899999999888887665 566665
Q ss_pred CC---CCe-----ee--EEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC-CCCCeEEEEE
Q 013436 256 LE---ANK-----LS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDS 324 (443)
Q Consensus 256 ~~---~~~-----~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~ 324 (443)
.. .+. .. ....++......+++. ++++++++...++.|.+||.. .++....... +....+.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d-~~G~l~va~~~~~~V~~~d~~----~G~~~~~~~~~~~~~p~~va~ 298 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKPICDGISID-KDHNIYVGDLAHSAIGVITSA----DRAYKLLVTDEKLSWTDSFNF 298 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEEC-TTCCEEEEEGGGTEEEEEETT----TTEEEEEEECGGGSCEEEEEE
T ss_pred HHHhcCCCCChhhhhcceEecccCCCCceEEEC-CCCCEEEEccCCCeEEEEECC----CCCEEEEEECCceecCCeeEE
Confidence 32 110 00 0112344456788996 789999998889999999984 3333222221 2456899999
Q ss_pred CCCCCEEEEEeCCCCEEEEe
Q 013436 325 RGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 325 ~~~~~~l~s~~~dg~i~iwd 344 (443)
.+++.++++.+..+.+.+|.
T Consensus 299 ~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 299 GSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CTTSCEEEEECCGGGSGGGB
T ss_pred CCCCcEEEEeCccccccccc
Confidence 99998888877655554443
No 228
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=8.9e-08 Score=82.36 Aligned_cols=194 Identities=13% Similarity=0.087 Sum_probs=133.8
Q ss_pred eEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEE-EECCCeEEEEECCCCce
Q 013436 127 AYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~ 203 (443)
...++|++|+.++++.+. ++.|.++|+.+++.+...... .+. ....+++. ++.|.. .-.++.+.++|..+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-DSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-TTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-CCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 578999998755555543 579999999999777654332 221 12345554 445554 44678999999998877
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccC-----CCeEEEEEe
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFG 278 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~i~~~ 278 (443)
...+... ... + ..+++||+.++++..++.|.++|..+.+.+..+.... ..++.+.|.
T Consensus 99 ~~~i~~g-~~~--------------g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 99 IKNFTHQ-MKD--------------G---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp EEEEECC-SSS--------------C---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEEECC-CCC--------------e---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 6544322 011 1 2355678878877778999999999998887776322 246788886
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC-------------CCCeEEEEECCCCCEE-EEEeCCCCEEEEe
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------------LEGITFIDSRGDGRYL-ISNGKDQAIKLWD 344 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd 344 (443)
++.+.+....++.|.+.|.. +++.+..+.-. ....+.|+|+|+++.| +++...+.|.+.+
T Consensus 161 --dg~lyvn~~~~~~V~vID~~----tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 161 --NGEVWANIWQTDCIARISAK----DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp --TTEEEEEETTSSEEEEEETT----TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred --CCEEEEecCCCCeEEEEECC----CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 46555555567899999998 77777766421 1356899999998655 5565688899888
Q ss_pred CCCC
Q 013436 345 IRKM 348 (443)
Q Consensus 345 ~~~~ 348 (443)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 8764
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.07 E-value=3.2e-08 Score=93.84 Aligned_cols=251 Identities=10% Similarity=0.029 Sum_probs=155.3
Q ss_pred CCCCEEEEEEC-CCeEEEEECCCCeEEEEeeecCCccceEEEEEE-C-CCCCeEEEEEC------------------CCe
Q 013436 134 ADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-S-PDQRHLVYASM------------------SPI 192 (443)
Q Consensus 134 ~~~~~l~~g~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~-s-~~~~~l~~~~~------------------dg~ 192 (443)
+||+++++... ++.|.+.|+.+.+...... ..... .+..+++ + |+++++++++. ++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~-ip~g~-~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILE-IPNAK-GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEE-CSSCC-SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEe-CCCCC-CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 38888887765 4579999999987665332 22212 3778887 5 99999988852 357
Q ss_pred EEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC-----------------------
Q 013436 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----------------------- 249 (443)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg----------------------- 249 (443)
+.+.|..+.+......+.... ..++++|+|+++++.+.+.
T Consensus 177 vtvID~~t~~v~~qI~Vgg~p-----------------d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~ 239 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNL-----------------DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA 239 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCC-----------------CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred EEEEECCCCeEEEEEEeCCCc-----------------cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc
Confidence 899999887665544432211 2366778888777776442
Q ss_pred ---------------eEEEEECCC--Cee-eEEeeccCCCeEEEEEeCCCCCEEEEe-eCCCeEEEEecccCC-------
Q 013436 250 ---------------CIYVYDLEA--NKL-SLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLN------- 303 (443)
Q Consensus 250 ---------------~i~iwd~~~--~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~-~~d~~i~iwd~~~~~------- 303 (443)
.|.+.|.++ ++. +..+.. .....++.++ ++|++++++ ..+.+|.++|+....
T Consensus 240 ~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~s-PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 240 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred ceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEc-CCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 377888877 444 444433 3356788997 777765554 467899999998321
Q ss_pred -CCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCC
Q 013436 304 -VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 382 (443)
Q Consensus 304 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (443)
.....+.... -......++|+|+|...++.-.|++|.+||+..... .+.. ....
T Consensus 318 ~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~--~~~g----------------------~~~~ 372 (595)
T 1fwx_A 318 DPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIR--AYAG----------------------EKVD 372 (595)
T ss_dssp CGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHH--HHHT----------------------CSCC
T ss_pred CcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhh--hhcc----------------------cccc
Confidence 0011223332 335678899999995455666799999999876110 0000 0002
Q ss_pred eeEEEEeccceeeeeeEEEecCCccCCccEEEEeeC---CCeE----------EEEEccChh
Q 013436 383 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCV----------YVYDLVSIQ 431 (443)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~---dg~v----------~iwd~~~g~ 431 (443)
+.+..+.-|..... .........+|||++|++... |+.+ .++|+..++
T Consensus 373 ~vi~kidV~yqpGh-~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 373 PIKDKLDVHYQPGH-LKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CEEEEEECSSCEEE-EEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eeEEEeeccccccc-ceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 33555554432111 122234468899999998753 4432 889996544
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.04 E-value=7.2e-08 Score=88.91 Aligned_cols=231 Identities=12% Similarity=0.045 Sum_probs=141.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCc------cceEEEEEECCCCCeEEEEECCCeEEEEECCCCceecccc
Q 013436 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL------RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 208 (443)
++..+++++.++.|..+|..+|+.+-........ ...+... ...++..+++++.++.|..+|..+++..-...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 3667888888899999999999766543332110 1122211 11245678888999999999999988654332
Q ss_pred ceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCe-----EEEEEeCCCCC
Q 013436 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGH 283 (443)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~ 283 (443)
..... ...+ ... +..+++++.++.|+.+|..+++.+.......... ...... +.
T Consensus 131 ~~~~~------------~~~p----~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~ 189 (376)
T 3q7m_A 131 VAGEA------------LSRP----VVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FG 189 (376)
T ss_dssp CSSCC------------CSCC----EEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TT
T ss_pred CCCce------------EcCC----EEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CC
Confidence 21100 0001 122 4568888899999999999998877765432211 222232 34
Q ss_pred EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCC-------eEEEEECC--CCCEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-------ITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
.++.++.++.+..+|.. +++.+......... +..+...| .+..++.++.++.+..+|.++++.
T Consensus 190 ~v~~g~~~g~l~~~d~~----tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~---- 261 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLME----QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI---- 261 (376)
T ss_dssp EEEECCTTTEEEEEETT----TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE----
T ss_pred EEEEEcCCCEEEEEECC----CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE----
Confidence 67788889999999998 67766555422110 00011111 245677778899999999988432
Q ss_pred CCcccccCcccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
+-....... .. +.. ++..|+.++.+|.|+.+|..+|+.+-
T Consensus 262 ------------------------------~w~~~~~~~----~~----~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 262 ------------------------------MWKRELGSV----ND----FIV--DGNRIYLVDQNDRVMALTIDGGVTLW 301 (376)
T ss_dssp ------------------------------EEEECCCCE----EE----EEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred ------------------------------EeeccCCCC----CC----ceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 222211110 01 111 35678888889999999999998764
Q ss_pred H
Q 013436 435 C 435 (443)
Q Consensus 435 ~ 435 (443)
.
T Consensus 302 ~ 302 (376)
T 3q7m_A 302 T 302 (376)
T ss_dssp E
T ss_pred e
Confidence 3
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.03 E-value=1e-08 Score=102.53 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=104.2
Q ss_pred CccceEEEEEECCCCCeEEEEEC-----CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCE
Q 013436 167 SLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (443)
Q Consensus 167 ~~~~~v~~i~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 241 (443)
++...+..++|||||++||.+.. ...|++||+.+++..... ... .....++|+ |++.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~----------------~k~~~~~Ws-Dg~~ 187 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD----------------VKFSGISWL-GNEG 187 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE----------------EESCCCEEE-TTTE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC----------------ceeccEEEe-CCCE
Confidence 35557889999999999986432 247999999998754321 110 012467999 9999
Q ss_pred EEEEecCC-------------eEEEEECCCCee--eEEe--ec-cCCCeEEEEEeCCCCCEEEEee----CCCeEEEEec
Q 013436 242 LVAGSSDD-------------CIYVYDLEANKL--SLRI--LA-HTSDVNTVCFGDESGHLIYSGS----DDNLCKVWDR 299 (443)
Q Consensus 242 l~~~~~dg-------------~i~iwd~~~~~~--~~~~--~~-~~~~v~~i~~~~~~~~~l~~~~----~d~~i~iwd~ 299 (443)
|+.++.+. .|++|++.++.. ...+ .. |...+..+.|+ +++++|+... .+..|.++|+
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDL 266 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEET
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEEC
Confidence 99888774 399999987643 2222 23 44557889998 7787765443 2358999998
Q ss_pred ccCCCCCc-eeeeecCCCCCeEEEEECCCCCEEEEEe-CC---CCEEEEeCCCC
Q 013436 300 RCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNG-KD---QAIKLWDIRKM 348 (443)
Q Consensus 300 ~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d---g~i~iwd~~~~ 348 (443)
. .+. ....+..+....... |++++..|+..+ .+ +.|..+|+.+.
T Consensus 267 ~----~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 267 S----QENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp T----STTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred C----CCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 7 332 344555566655555 566666555443 33 57888898763
No 232
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.98 E-value=1e-07 Score=81.02 Aligned_cols=180 Identities=15% Similarity=0.114 Sum_probs=123.5
Q ss_pred eEEEEECCCCCEEEEEECCC--eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE-ECCCeEEEEECCCCce
Q 013436 127 AYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTM 203 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~~~ 203 (443)
...+.|+ ++.++.+.+.+| .|+++|+.+++.+........ . --..+++ +++.|... -.++.+.+||..+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~-FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-Y-FGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-C-CEEEEEE--ETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-c-ceeEEEE--eCCEEEEEEeeCCEEEEEECccCcE
Confidence 4778888 677777777766 899999999987766543221 1 1122333 44555544 4688999999999887
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccC-----CCeEEEEEe
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFG 278 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~i~~~ 278 (443)
...+.... . ...++++++.|+.+..++.|.++|..+.+.+.++.... ..++.+.|.
T Consensus 120 ~~ti~~~~--e-----------------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 120 VRSFNYDG--E-----------------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp EEEEECSS--C-----------------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEEECCC--C-----------------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 65544321 1 12333577777777778889999999998888776421 345678885
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC------------CCCeEEEEECCCCCEEEEEeC
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------------LEGITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~s~~~ 336 (443)
++.+.+..-.+..|.+.|.+ +++.+..+.-. ....+.|+|+|+++.|.+.++
T Consensus 181 --~G~lyan~w~~~~I~vIDp~----tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 181 --DGEIFANVWQTNKIVRIDPE----TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp --TTEEEEEETTSSEEEEECTT----TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred --CCEEEEEEccCCeEEEEECC----CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 56666666578899999998 77777665431 235689999998887776665
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.97 E-value=8.1e-07 Score=81.79 Aligned_cols=232 Identities=11% Similarity=0.043 Sum_probs=142.5
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceeccc
Q 013436 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (443)
++..+++++.++.|..+|..+|+.+............. .. .+..+++++.++.|..+|..+++..-.........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p---~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRP---VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCC---EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCC---EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 45678888899999999999997665433222111111 11 24578888899999999999987654433211100
Q ss_pred CceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCC----------e-EEEEEeCCCCC
Q 013436 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD----------V-NTVCFGDESGH 283 (443)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~ 283 (443)
. .... ...... +..+++++.++.|..+|..+++.+......... + ..... .+.
T Consensus 177 ~-------~~~~----~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~ 240 (376)
T 3q7m_A 177 S-------LRGE----SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNG 240 (376)
T ss_dssp ---------CCC----CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETT
T ss_pred e-------ecCC----CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECC
Confidence 0 0000 111122 456888888999999999999887666432110 1 11111 245
Q ss_pred EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCc
Q 013436 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (443)
.++.++.++.+..+|.+ +++.+..... .....+.. ++..+..++.++.|..+|..+.+.
T Consensus 241 ~v~~~~~~g~l~~~d~~----tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~------------- 299 (376)
T 3q7m_A 241 VVFALAYNGNLTALDLR----SGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT------------- 299 (376)
T ss_dssp EEEEECTTSCEEEEETT----TCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE-------------
T ss_pred EEEEEecCcEEEEEECC----CCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE-------------
Confidence 67788889999999998 7777655542 33444544 356777888899999999988442
Q ss_pred ccccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhHh
Q 013436 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFCR 436 (443)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~~ 436 (443)
+-........ .. .+|.. .+..|+.++.+|.|+++|..+|+.+...
T Consensus 300 ---------------------~w~~~~~~~~-~~----~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 300 ---------------------LWTQSDLLHR-LL----TSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp ---------------------EEEECTTTTS-CC----CCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ---------------------EEeecccCCC-cc----cCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 2222210000 00 01111 2467888889999999999999876543
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.93 E-value=1.6e-06 Score=78.00 Aligned_cols=202 Identities=15% Similarity=0.120 Sum_probs=123.0
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecC-----------------CccceEEEEEECCCCCeEEEEE
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----------------SLRWTVTDTSLSPDQRHLVYAS 188 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~~~v~~i~~s~~~~~l~~~~ 188 (443)
...+++|+++|++++++..++.|..|+..++... ...... .....+..+++.+++..|+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 3567889999997888888999999998875332 111100 0112478899998334466665
Q ss_pred CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEec-----------------CCe
Q 013436 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS-----------------DDC 250 (443)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~-----------------dg~ 250 (443)
..+.|..+|..++......... .+ ........+++.+ +|+..++-.. ++.
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~---~~---------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSV---DG---------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEE---TT---------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred CCCCEEEEeCCCCEEEEecccC---CC---------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 5566888887655432221110 00 0011467899999 8986665432 367
Q ss_pred EEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEe-eCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCC
Q 013436 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (443)
Q Consensus 251 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 329 (443)
|..||..+++..... ......+.|+++ ++++.|+.+ ..++.|.+|++.... .+. ...+....+ ...+++.++|+
T Consensus 167 v~~~d~~~~~~~~~~-~~~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~-~~~-~~~~~~~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 167 LIKYDPSTKETTLLL-KELHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPK-KGT-AEVLVKIPN-PGNIKRNADGH 241 (322)
T ss_dssp EEEEETTTTEEEEEE-EEESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTT-TTC-EEEEEECSS-EEEEEECTTSC
T ss_pred EEEEeCCCCEEEEec-cCCccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCc-CCc-cceEEeCCC-CCCeEECCCCC
Confidence 999998777643322 223445789997 777755544 566899999986321 111 111111223 77899999998
Q ss_pred EEEEEeC----------CCCEEEEeC
Q 013436 330 YLISNGK----------DQAIKLWDI 345 (443)
Q Consensus 330 ~l~s~~~----------dg~i~iwd~ 345 (443)
++++... .+.|..+|.
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred EEEEecCcccccccCCCccEEEEECC
Confidence 7776644 355666664
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.93 E-value=2.8e-06 Score=74.06 Aligned_cols=189 Identities=9% Similarity=0.043 Sum_probs=112.6
Q ss_pred CEEEEEECCCeEEEEECCCCeEEE--EeeecCCccceEEEEEECCCCCeEEEEE-CCCeEEEEECCCCceeccccceecc
Q 013436 137 SLFVAGFQASQIRIYDVERGWKIQ--KDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIH 213 (443)
Q Consensus 137 ~~l~~g~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 213 (443)
.+|+.+.. +.|+.+++....... ...........+..++|++++..|..+. ..+.|..+++.+.........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~---- 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ---- 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT----
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC----
Confidence 45555544 478889887652110 0000111123478899999776666554 567999999876543221110
Q ss_pred cCceeeccCCCCceecEEEEEEeCCCCEEEEE-ecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeC--
Q 013436 214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-- 290 (443)
Q Consensus 214 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-- 290 (443)
.......++++|++..|+.+ ...+.|.++++..................+++.|..+.++++...
T Consensus 77 ------------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 77 ------------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp ------------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred ------------CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCC
Confidence 00156789999976655555 456789999987543222222222567899997434554444433
Q ss_pred CCeEEEEecccCCCCCceeeeec-CCCCCeEEEEECCCCCEEE-EEeCCCCEEEEeCCC
Q 013436 291 DNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRK 347 (443)
Q Consensus 291 d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~ 347 (443)
.+.|..+++. +.....+. ........+++++++..|. +....+.|.++|+..
T Consensus 145 ~~~I~~~~~d-----g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 145 NPKIETSHMD-----GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp SCEEEEEETT-----SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred CcEEEEEecC-----CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence 4688888875 22222221 2234678999999876654 555568899999865
No 236
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.92 E-value=3e-06 Score=72.42 Aligned_cols=210 Identities=11% Similarity=0.094 Sum_probs=135.9
Q ss_pred cccCCCCceEEEEECCCCCE-EEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 119 PVDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~-l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
.+.+....+..++|+|++.. +++...++.|...|.. ++.+.... ..+. .....|++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-LDFV-KDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-CSSC-SSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-cCCC-CChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 45666778999999998664 5557778889999998 65555432 2222 3478889999887666655778899999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC---CCeeeEEee-------c
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---ANKLSLRIL-------A 267 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~-------~ 267 (443)
+............... + ...........++|+|+++.|+++.+.....+|.+. ....+..+. .
T Consensus 98 v~~~~~i~~~~~~~~~----~---~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIP----L---QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF 170 (255)
T ss_dssp ECTTCCEEEEEEEECC----C---SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred cCCCCeeeeeeeeccc----c---ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence 8765431111111100 0 001123367899999999877777766544444443 111122221 1
Q ss_pred cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC---------CCCeEEEEECCCCCEEEEEeCCC
Q 013436 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---------LEGITFIDSRGDGRYLISNGKDQ 338 (443)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~s~~~dg 338 (443)
+...+.++++.|..+++++....+..+.++|.. ++.+..+.-. -..-..|+|.++|+++++ +..+
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-----g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n 244 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-----GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN 244 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-----CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-----CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc
Confidence 234678999998888899888899999999974 5555444322 136688999999986666 5656
Q ss_pred CEEEEe
Q 013436 339 AIKLWD 344 (443)
Q Consensus 339 ~i~iwd 344 (443)
.++.+.
T Consensus 245 ~~y~f~ 250 (255)
T 3qqz_A 245 RFYRFT 250 (255)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 555553
No 237
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.92 E-value=3.9e-08 Score=89.48 Aligned_cols=211 Identities=13% Similarity=0.056 Sum_probs=128.6
Q ss_pred EEEECCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeeecCCc----cceEEEEEECCCCCeEEEEEC--CCe
Q 013436 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYASM--SPI 192 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~----------~d~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~i~~s~~~~~l~~~~~--dg~ 192 (443)
.++++||+++++++. .++.|.+||+.+++.+..+...... ......++++|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999988886 3688999999999877765432110 012456899999999999875 357
Q ss_pred EEE--EECCCCceeccccceec----ccC-ceeeccCCC---------------C------------ceecEEEEEEeCC
Q 013436 193 VHI--VDVGSGTMESLANVTEI----HDG-LDFSAADDG---------------G------------YSFGIFSLKFSTD 238 (443)
Q Consensus 193 i~i--wd~~~~~~~~~~~~~~~----~~~-~~~~~~~~~---------------~------------~~~~i~~l~~~~~ 238 (443)
|.+ +|..+ ... ...... ..+ ..+...... + ...+. . .++
T Consensus 149 v~V~~iD~~t--v~~-i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~ 221 (368)
T 1mda_H 149 AGLSVPGASD--DQL-TKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANY 221 (368)
T ss_dssp EEEEETTTEE--EEE-EECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETT
T ss_pred EEEEEEchhh--ceE-EECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-ccc
Confidence 888 88865 111 110000 000 000000000 0 00111 2 555
Q ss_pred CCEEEEEecCCeEEEEECCCCe--eeEEeec----------cCCCeEEEEEeCCCCCEEEEeeC---------CCeEEEE
Q 013436 239 GRELVAGSSDDCIYVYDLEANK--LSLRILA----------HTSDVNTVCFGDESGHLIYSGSD---------DNLCKVW 297 (443)
Q Consensus 239 ~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~----------~~~~v~~i~~~~~~~~~l~~~~~---------d~~i~iw 297 (443)
+..++..+. +.|.+.|+.+.. .+..+.. .......++++ ++++.++++.. ++.+.++
T Consensus 222 ~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s-~dg~~lyV~~~~~~~~~~~~~~~~~Vi 299 (368)
T 1mda_H 222 PGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL-KNTDGIMILTVEHSRSCLAAAENTSSV 299 (368)
T ss_dssp TTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE-TTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred CCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc-CCCCEEEEEeccccCcccccCCCEEEE
Confidence 666666666 889999986542 2222211 01112226787 66666665432 2356699
Q ss_pred ecccCCCCCceeeeecCCCCCeEEEEECCCCC-EEEEEe-CCCCEEEEeCCCCCCccc
Q 013436 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNG-KDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~ 353 (443)
|+. +.+.+..+.... ....++|+|||+ .+++.. .++.|.++|+.+.+.+..
T Consensus 300 D~~----t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 300 TAS----VGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp ESS----SCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred ECC----CCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEE
Confidence 998 777777765433 578899999997 566776 599999999999554433
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=5.8e-07 Score=77.27 Aligned_cols=154 Identities=10% Similarity=0.052 Sum_probs=101.1
Q ss_pred eEEEEEECCCCCeEEEEEC--CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEE-ec
Q 013436 171 TVTDTSLSPDQRHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SS 247 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~ 247 (443)
....++|++++.++++.+. ++.|+++|+.+++......+.... ....+++. +..|+.+ -.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~---------------fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY---------------FGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC---------------CEEEEEEE--TTEEEEEETT
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc---------------ceEEEEEe--CCEEEEEEec
Confidence 3678999998754444443 579999999999876654332110 12235554 4445444 45
Q ss_pred CCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC-----CCCeEEE
Q 013436 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-----LEGITFI 322 (443)
Q Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~ 322 (443)
++.+.++|..+.+.+.++......-..++. +++.++++..++.|.++|.. +.+.+..+.-. ...++.+
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~g~glt~---Dg~~l~vs~gs~~l~viD~~----t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKDGWGLAT---DGKILYGSDGTSILYEIDPH----TFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSSCCEEEE---CSSSEEEECSSSEEEEECTT----TCCEEEEEECEETTEECCCEEEE
T ss_pred CCEEEEEECCCCcEEEEEECCCCCeEEEEE---CCCEEEEECCCCeEEEEECC----CCcEEEEEEECCCCcccccceeE
Confidence 789999999999988888643122233433 44445555578899999998 66666555421 1246778
Q ss_pred EECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 323 DSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 323 ~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
.|. +++.++....++.|.+.|..+++
T Consensus 158 e~~-dg~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 158 EYI-NGEVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTTCC
T ss_pred EEE-CCEEEEecCCCCeEEEEECCCCc
Confidence 888 77666666568899999999844
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.85 E-value=7.8e-07 Score=81.53 Aligned_cols=193 Identities=13% Similarity=0.057 Sum_probs=125.6
Q ss_pred ceEEEEECCCCCEEEEEECC------CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-----------
Q 013436 126 RAYVSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------- 188 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----------- 188 (443)
.-..+..+|+| +++++..+ +.|.++|..+.+.+.+.........--..+.|+|+++.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 34567888999 77766555 7899999999877766543323222344688999999888874
Q ss_pred --------CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEE--eCCCCEEEEEec------CCeEE
Q 013436 189 --------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGSS------DDCIY 252 (443)
Q Consensus 189 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~l~~~~~------dg~i~ 252 (443)
...+|.+||+.+++......... .......+.| +|+++++++++. ++.|.
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~--------------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~ 283 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE--------------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIW 283 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTEEEEEEESCT--------------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEE
T ss_pred chhhhhhccCCEEEEEECCCCcEeeEEecCC--------------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEE
Confidence 36799999999876554433211 0113345555 999998888774 56787
Q ss_pred EEECCCCee--eEEe--ecc----------------CCCeEEEEEeCCCCCEEEEeeC-CCeEEEEecccCCCCCceeee
Q 013436 253 VYDLEANKL--SLRI--LAH----------------TSDVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGV 311 (443)
Q Consensus 253 iwd~~~~~~--~~~~--~~~----------------~~~v~~i~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~ 311 (443)
+|....++. .+.+ ... ......|.++ +++++|+++.. .+.|.+||+.... ..+.+..
T Consensus 284 v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS-~DGrfLYVSnrg~d~VavfdV~d~~-~~~lv~~ 361 (462)
T 2ece_A 284 LWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS-LDDKFLYLSLWGIGEVRQYDISNPF-KPVLTGK 361 (462)
T ss_dssp EEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC-TTSCEEEEEETTTTEEEEEECSSTT-SCEEEEE
T ss_pred EEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC-CCCCEEEEEeCCCCEEEEEEecCCC-CcEEEEE
Confidence 766544421 1111 110 2456789998 77887777654 6799999986321 2344444
Q ss_pred ecCCC--------------CCeEEEEECCCCCEEEEEe
Q 013436 312 LMGHL--------------EGITFIDSRGDGRYLISNG 335 (443)
Q Consensus 312 ~~~~~--------------~~v~~~~~~~~~~~l~s~~ 335 (443)
+.... +.-..++++|||++|+++.
T Consensus 362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 32210 1347789999999998887
No 240
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.83 E-value=2.3e-06 Score=71.99 Aligned_cols=181 Identities=15% Similarity=0.094 Sum_probs=121.0
Q ss_pred eEEEEECCCCCEEEEEECC--CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCcee
Q 013436 127 AYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (443)
...+.|++ +.++.+.+.+ +.|+.+|+.+++.+........ .. -..+++. .++..+..-.++.+.+||..+.+..
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~f-geGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YF-GAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CC-EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cc-eeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEE
Confidence 55888886 5666666664 4899999999977765533322 11 1223332 2334444557889999999998876
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccC-----CCeEEEEEeC
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGD 279 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~i~~~~ 279 (443)
..+.... .-..+ .+++..|+.+..++.|.++|..+.+.+.++.... ..++.+.+.
T Consensus 99 ~ti~~~~-----------------~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 99 ARFRYPG-----------------EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV- 158 (243)
T ss_dssp EEEECSS-----------------CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEeCCC-----------------CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence 5544321 11233 3467777777778999999999998888776422 356777874
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC-------------CCCCeEEEEECCCCCEEEEEeC
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------------HLEGITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~s~~~ 336 (443)
++.+++..-.+..|.+.|.+ +++.+..+.- .....+.|+++|+++.|...++
T Consensus 159 -~G~lyanvw~s~~I~vIDp~----tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 -NGELLANVWLTSRIARIDPA----SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -TTEEEEEETTTTEEEEECTT----TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEECCCCeEEEEECC----CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 56666666567899999998 7777666541 1235689999998777666654
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.82 E-value=5.7e-07 Score=81.01 Aligned_cols=176 Identities=13% Similarity=0.045 Sum_probs=114.1
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccC
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (443)
+..|.+++.++.|..+|.. +........ ....+.++...+++. +++++.++.|..+|.. ++........
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~---~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~----- 175 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKT---KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN----- 175 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEEC---SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS-----
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcC---CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC-----
Confidence 5567778888999999988 655443322 222345566666666 6667888999999988 6543322211
Q ss_pred ceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEE
Q 013436 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (443)
Q Consensus 216 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~ 295 (443)
...+.++...+++. +.+++ +.|..+| .+++...........+.++... .++. +..++.++.|.
T Consensus 176 -----------~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~-~~g~-l~v~t~~~gl~ 238 (330)
T 3hxj_A 176 -----------DAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS-EDGT-IYVTSLDGHLY 238 (330)
T ss_dssp -----------SCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEEC-TTSC-EEEEETTTEEE
T ss_pred -----------CCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEEC-CCCe-EEEEcCCCeEE
Confidence 01345566667777 44454 7799999 7777666666555667888885 5554 55667778888
Q ss_pred EEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
.+|. .+..+..+......+..+.+.+++. |..++.+|.|..+|.
T Consensus 239 ~~~~-----~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 239 AINP-----DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp EECT-----TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred EECC-----CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 8874 4555555554444444566666665 566777888999985
No 242
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=6.6e-07 Score=88.82 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=129.3
Q ss_pred CCEEEEEEC------CCeEEEEECCCCeEEEEeeecCCc-----------------------------cceEEEEEECCC
Q 013436 136 GSLFVAGFQ------ASQIRIYDVERGWKIQKDILAKSL-----------------------------RWTVTDTSLSPD 180 (443)
Q Consensus 136 ~~~l~~g~~------d~~i~iwd~~~~~~~~~~~~~~~~-----------------------------~~~v~~i~~s~~ 180 (443)
+..+++++. ++.|+.||..+|+.+-........ ......+++.|+
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~ 253 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE 253 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence 345555543 689999999999777654432211 001135778888
Q ss_pred CCeEEEEECCC-------------------eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC--
Q 013436 181 QRHLVYASMSP-------------------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-- 239 (443)
Q Consensus 181 ~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-- 239 (443)
+..++++..++ .|..+|..+++..-..+... ++...+. ... ....+....+|
T Consensus 254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~-~d~wd~~-----~~~-~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP-GDNWDYT-----STQ-PMILADIKIAGKP 326 (677)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCC-----CCS-CCEEEEEEETTEE
T ss_pred CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC-Ccccccc-----cCC-CcEEEecccCCcE
Confidence 88888877664 59999999998765443221 0000000 001 12223333477
Q ss_pred -CEEEEEecCCeEEEEECCCCeeeEEeeccCC-----------Ce------------------------EEEEEeCCCCC
Q 013436 240 -RELVAGSSDDCIYVYDLEANKLSLRILAHTS-----------DV------------------------NTVCFGDESGH 283 (443)
Q Consensus 240 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v------------------------~~i~~~~~~~~ 283 (443)
..++.++.+|.|+++|..+++.+..+..... ++ ..++++ ++..
T Consensus 327 ~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d-p~~~ 405 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN-PQTG 405 (677)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE-TTTT
T ss_pred eeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEc-CCCC
Confidence 6899999999999999999998776542110 01 145776 5556
Q ss_pred EEEEeeC-------------------------------------------CCeEEEEecccCCCCCceeeeecCCCCCeE
Q 013436 284 LIYSGSD-------------------------------------------DNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (443)
Q Consensus 284 ~l~~~~~-------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 320 (443)
++++... .+.|..||+. +++.+..+.. ..++.
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~----tG~~~W~~~~-~~~~~ 480 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV----AQKAAWSVEH-VSPWN 480 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT----TTEEEEEEEE-SSSCC
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC----CCcEEeecCC-CCCCc
Confidence 6666432 2789999998 7787776653 23344
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
...+...+..++.++.||.+++||.++++.
T Consensus 481 ~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 481 GGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 444556777888899999999999999443
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.79 E-value=6.1e-07 Score=76.19 Aligned_cols=180 Identities=11% Similarity=0.025 Sum_probs=122.0
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceecc
Q 013436 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 206 (443)
...+.|+ ++.++++.+.+|.|+++|+.+++.+... .. .. .--..+++.. ++..+..-.++.+.+||..+.+....
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TT-CCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CC-cceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence 3677887 4667777778889999999999777665 22 21 1123355532 23444455788999999999887665
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccC-----CCeEEEEEeCCC
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGDES 281 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~ 281 (443)
+.... .-..++ ++++.|+.+..++.|.++|..+.+.+.++.... ..++.+.|. +
T Consensus 132 i~~~~-----------------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--d 190 (268)
T 3nok_A 132 TRYSG-----------------EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--N 190 (268)
T ss_dssp EECSS-----------------CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--T
T ss_pred EeCCC-----------------ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--C
Confidence 44321 112233 467888888778999999999998888776322 245778885 5
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCceeeeecCC-------------CCCeEEEEECCCCCEEEEEeC
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------------LEGITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~s~~~ 336 (443)
+.+.+..-.+..|.+.|.+ +++.+..+.-. ....+.|+++|+++.|+..++
T Consensus 191 G~lyanvw~s~~I~vIDp~----TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPA----TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TEEEEEETTCSEEEEECTT----TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CEEEEEECCCCeEEEEeCC----CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6666655568899999998 77776665421 235789999997665555443
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.78 E-value=1e-06 Score=83.74 Aligned_cols=190 Identities=14% Similarity=0.138 Sum_probs=124.5
Q ss_pred EEEEECCCeEEEEECCCCeEEEEeeecC--------------------------------C----ccceEEEEEECC---
Q 013436 139 FVAGFQASQIRIYDVERGWKIQKDILAK--------------------------------S----LRWTVTDTSLSP--- 179 (443)
Q Consensus 139 l~~g~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------~----~~~~v~~i~~s~--- 179 (443)
|.+|+..|.++|+-+-+++.+..+-... + ..+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 6678889999999888876554332211 0 001112244444
Q ss_pred --CCCeEEEEEC-CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEE-e-CCCCEEEEEe--------
Q 013436 180 --DQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-S-TDGRELVAGS-------- 246 (443)
Q Consensus 180 --~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~-~~~~~l~~~~-------- 246 (443)
||+++.+... ++.|.+.|+.+.++..+..+.... ....+++ + |+++++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~---------------~phg~~~~~~p~~~~v~~~~~~~~p~~~ 162 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK---------------GIHGLRPQKWPRSNYVFCNGEDETPLVN 162 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC---------------SEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC---------------CCcceeeeecCCCcEEEEecccccccCC
Confidence 7888877665 457999999999876655433211 4667887 4 8999998885
Q ss_pred ----------cCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCC------------------------
Q 013436 247 ----------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN------------------------ 292 (443)
Q Consensus 247 ----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~------------------------ 292 (443)
.++.+.++|..+.+...++.-.. ....++++ ++++++++.+.+.
T Consensus 163 dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~ 240 (595)
T 1fwx_A 163 DGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE 240 (595)
T ss_dssp SSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred CCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence 24579999999999888876433 45667786 6788888877553
Q ss_pred --------------eEEEEecccCCCCCce-eeeecCCCCCeEEEEECCCCCEEEEEe-CCCCEEEEeCCCC
Q 013436 293 --------------LCKVWDRRCLNVKGKP-AGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKM 348 (443)
Q Consensus 293 --------------~i~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~ 348 (443)
.|.+.|.+... +.. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.
T Consensus 241 ~~~~v~~Gk~~~i~~V~VID~~~~~--~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 241 IEKAIAAGDYQELNGVKVVDGRKEA--SSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp HHHHHHHTCSEEETTEEEEECSGGG--CCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred eeEeccCCCeeEECcEEEEeCcccC--CceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 25555554110 222 222221 12445789999999887666 4789999999863
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.76 E-value=7.8e-07 Score=88.22 Aligned_cols=167 Identities=15% Similarity=0.171 Sum_probs=99.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCCc-cceEEEEEECC--CCCeEEEEEC------CCeEEEEECCCCceecc
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESL 206 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~i~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~ 206 (443)
+..+++++.|+.|..+|..+|+.+-........ ...+. -+| .+..++++.. +|.|..+|..+++..-.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~---~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSIT---GAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCC---SCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceec---CCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 567888889999999999999777654432110 01111 111 1334555432 58999999999987654
Q ss_pred ccceecccCce-------eeccCCC--------CceecEEEEEEeCCCCEEEEEecCC-------------------eEE
Q 013436 207 ANVTEIHDGLD-------FSAADDG--------GYSFGIFSLKFSTDGRELVAGSSDD-------------------CIY 252 (443)
Q Consensus 207 ~~~~~~~~~~~-------~~~~~~~--------~~~~~i~~l~~~~~~~~l~~~~~dg-------------------~i~ 252 (443)
........... .....-. +.......+++.|+...++.++.++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 43211000000 0000000 0111123468888888888887766 499
Q ss_pred EEECCCCeeeEEeec--cC-------CCeEEEEEeCCCCC---EEEEeeCCCeEEEEecccCCCCCceee
Q 013436 253 VYDLEANKLSLRILA--HT-------SDVNTVCFGDESGH---LIYSGSDDNLCKVWDRRCLNVKGKPAG 310 (443)
Q Consensus 253 iwd~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~ 310 (443)
.+|..+++.+..+.. |. .+.....+. .+++ .++.++.+|.++++|.. +++.+.
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l~ 338 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-IDGKPRKVLMQAPKNGFFYVLDRT----NGKLIS 338 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEE
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEec-cCCcEEEEEEEECCCCEEEEEECC----CCCEec
Confidence 999999998877763 22 222222222 2444 68899999999999998 666653
No 246
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.76 E-value=1.8e-05 Score=70.45 Aligned_cols=197 Identities=13% Similarity=0.059 Sum_probs=117.6
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC-C-eEEEEECCCCc
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-IVHIVDVGSGT 202 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-g-~i~iwd~~~~~ 202 (443)
.....++|+++|+++++-..++.|..||.... ... .... ...+..+++.++++++++.... + .|..++..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~-~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI-HATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE-EEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE-EEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 45678999999997777767899999998764 222 1222 2358899999999966654433 2 47777777776
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCee-eEEee---------ccCCCe
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRIL---------AHTSDV 272 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~---------~~~~~v 272 (443)
.......... . ....++..+++..+++-..++.|+++|..+++. +.... ..-...
T Consensus 107 ~~~~~~~~~~------------~---~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 107 VETLLTLPDA------------I---FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp EEEEEECTTC------------S---CEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred EEEEEeCCCc------------c---ccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 5432221100 0 122334445554444444588999999876531 11111 111234
Q ss_pred EEEEEeCCCCC-EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 273 NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 273 ~~i~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
+.| + +++. ++++-...+.|..+|+.... .......+.. ......++++++|+++++....+.|.++|..
T Consensus 172 ngi--s-~dg~~lyv~d~~~~~I~~~~~~~~g-~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 172 NGL--K-RFGNFLYVSNTEKMLLLRIPVDSTD-KPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEE--E-EETTEEEEEETTTTEEEEEEBCTTS-CBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCc--C-cCCCEEEEEeCCCCEEEEEEeCCCC-CCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 555 4 4454 45555667899999986310 0011111111 1245668899999988887778899999864
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.74 E-value=1.6e-05 Score=69.28 Aligned_cols=197 Identities=11% Similarity=0.032 Sum_probs=120.7
Q ss_pred ceEEEEECCCCCEEEEE-ECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CCCeEEEEECCCCce
Q 013436 126 RAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTM 203 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~ 203 (443)
.+..++|++++..|+.+ ..++.|..++..++... ... . ..-.....++++|++..|..+. ..+.|.++++.....
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~-~-~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~ 113 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TII-R-QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEE-C-TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EEE-E-CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence 46799999976655554 45678999999865322 211 1 1113478899999766665554 567899999875432
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec---CCeEEEEECCCCeeeEEee-ccCCCeEEEEEeC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGD 279 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~ 279 (443)
...... + ......++++|++..|+.+.. .+.|..+++.... ...+. ........+++++
T Consensus 114 ~~~~~~-----~-----------~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~ 176 (267)
T 1npe_A 114 RVLFDT-----G-----------LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDA 176 (267)
T ss_dssp EEEECS-----S-----------CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEET
T ss_pred EEEEEC-----C-----------CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcC
Confidence 211100 0 014578999997666666554 3689999886433 22222 3334678999974
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
..+.++++-...+.|.++|.. .......+.+ ......++.. ++.++++....+.|.++|..+.
T Consensus 177 ~~~~lyv~d~~~~~I~~~~~~----g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 177 FSSQLCWVDAGTHRAECLNPA----QPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp TTTEEEEEETTTTEEEEEETT----EEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred CCCEEEEEECCCCEEEEEecC----CCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence 344555556667899999986 2222222222 2334566664 3444455555688999998873
No 248
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.73 E-value=2.4e-07 Score=91.94 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=77.4
Q ss_pred EEEECC-CCCEEEEEECCC-----------eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC-CCeEEE
Q 013436 129 VSQFSA-DGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHI 195 (443)
Q Consensus 129 ~~~~s~-~~~~l~~g~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg~i~i 195 (443)
.+++.+ ++++++.|+.+. .+.+||..++...........+.....++++.++++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 889899887643 5889999887422211111122222445677889999999884 458999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe-cC-----CeEEEEECCCCeee
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD-----DCIYVYDLEANKLS 262 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~ 262 (443)
||..+++........... .-.+++..++++.++.|+ .+ ..+.+||..+++..
T Consensus 270 yd~~t~~W~~~~~~~~~R---------------~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVAR---------------GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEGGGTEEEECCCCSSCC---------------SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ecCcCCceeECCCCCccc---------------cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 999887665443221110 122455667899999988 34 46999999887643
No 249
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.71 E-value=1.7e-06 Score=87.10 Aligned_cols=200 Identities=14% Similarity=0.087 Sum_probs=115.4
Q ss_pred CCCC-ceEEEEEC-CCCCEEEEEEC-CC----eEEEEECCCC-eEEEEeeecCCccceEEEEEECCCCCeEEEEECC---
Q 013436 122 QTTS-RAYVSQFS-ADGSLFVAGFQ-AS----QIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--- 190 (443)
Q Consensus 122 ~h~~-~v~~~~~s-~~~~~l~~g~~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d--- 190 (443)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+.. ........++|+||++.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----~~~~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----KVSGTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----CEEEECSCCEECSSTTEEEEEEECTTC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----cccCceeeEEEecCCCEEEEEEECCCC
Confidence 3443 68889999 99999886544 22 4999999988 52211 111123468899999988887765
Q ss_pred --CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec---CCeEEEEECCCCe-ee--
Q 013436 191 --PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANK-LS-- 262 (443)
Q Consensus 191 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~-- 262 (443)
..|+++++.++........... .......+.|+|||++|+..+. ...|+++|+.++. ..
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~-------------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~ 311 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEH-------------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTL 311 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECC-------------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCE
T ss_pred CCCEEEEEECCCCchhcEEEEecC-------------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCcee
Confidence 2688888876642211110000 0013457899999998887663 3468999998752 12
Q ss_pred EEee-ccCCCeEEEEEeCCCCCEEEEeeCC----CeEEEEecccCCCCCceeee-ecCCCC--CeEEEEECCCCCEEEEE
Q 013436 263 LRIL-AHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGKPAGV-LMGHLE--GITFIDSRGDGRYLISN 334 (443)
Q Consensus 263 ~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~s~ 334 (443)
..+. .......++.|+ .++.+++....+ ..|..+|+. ....... +..+.. .+..+.+. .+.++++.
T Consensus 312 ~~l~~~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~----~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~ 385 (751)
T 2xe4_A 312 EIVRPREKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRG----QPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAG 385 (751)
T ss_dssp EESSCCCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETT----STTCCCCEEECCCSSEEEEEEEEC-SSEEEEEE
T ss_pred EEeecCCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCC----CcccceeeEECCCCCcEEEEEEEE-CCEEEEEE
Confidence 3332 334555666664 444455554443 256666654 2112122 223333 34555554 23344566
Q ss_pred eCCCC--EEEEeC
Q 013436 335 GKDQA--IKLWDI 345 (443)
Q Consensus 335 ~~dg~--i~iwd~ 345 (443)
..++. |.++|+
T Consensus 386 ~~~g~~~l~~~dl 398 (751)
T 2xe4_A 386 RRAGLTRIWTMMA 398 (751)
T ss_dssp EETTEEEEEEEEC
T ss_pred EeCCEEEEEEEec
Confidence 66775 455564
No 250
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.70 E-value=6.8e-06 Score=79.78 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=95.1
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCCc-cceEEEEEECC--CCCeEEEEEC------CCeEEEEECCCCceecc
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESL 206 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~i~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~ 206 (443)
+..+++++.|+.|..+|..+|+.+-+....... ...+. -+| .+..+++++. ++.|..+|..+++..-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~---~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLT---QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCC---SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceec---cCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 567888888999999999999776554322100 00111 111 1335555554 78999999999987543
Q ss_pred ccceecccCc----------ee---------ecc----CCCCceecEEEEEEeCCCCEEEEEecC---------------
Q 013436 207 ANVTEIHDGL----------DF---------SAA----DDGGYSFGIFSLKFSTDGRELVAGSSD--------------- 248 (443)
Q Consensus 207 ~~~~~~~~~~----------~~---------~~~----~~~~~~~~i~~l~~~~~~~~l~~~~~d--------------- 248 (443)
.......... .+ ... ...+ ...-..+++.++...++.++.+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg-~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGG-GTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCC-CCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCC-CCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 3322110000 00 000 0000 0001235667766667666532
Q ss_pred -CeEEEEECCCCeeeEEeecc--CC----CeEEEEEeC--CCC---CEEEEeeCCCeEEEEecccCCCCCceeeee
Q 013436 249 -DCIYVYDLEANKLSLRILAH--TS----DVNTVCFGD--ESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (443)
Q Consensus 249 -g~i~iwd~~~~~~~~~~~~~--~~----~v~~i~~~~--~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 312 (443)
+.|..+|..+++.+..+... .. .+....+.. .++ +.++.++.+|.+.++|.. +++.+...
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~----tG~~~w~~ 342 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE----NGNLIVAE 342 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT----TCCEEEEE
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC----CCCEEeee
Confidence 36999999999988776532 11 111222211 245 367788899999999988 66665543
No 251
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.69 E-value=1.1e-06 Score=87.41 Aligned_cols=197 Identities=13% Similarity=0.115 Sum_probs=126.2
Q ss_pred EEEEECCCCCEEEEEECCCe-------------------EEEEECCCCeEEEEeeecCC------ccceEEEEEECCCCC
Q 013436 128 YVSQFSADGSLFVAGFQASQ-------------------IRIYDVERGWKIQKDILAKS------LRWTVTDTSLSPDQR 182 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~~d~~-------------------i~iwd~~~~~~~~~~~~~~~------~~~~v~~i~~s~~~~ 182 (443)
..++++|++.+++.+..++. |..+|..+|+.+-....... ...++.......+|+
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 36789999999999887764 99999999977765443211 111222222223554
Q ss_pred ---eEEEEECCCeEEEEECCCCceeccccceecc--------cC-----------------ceeeccCCCCceecEEEEE
Q 013436 183 ---HLVYASMSPIVHIVDVGSGTMESLANVTEIH--------DG-----------------LDFSAADDGGYSFGIFSLK 234 (443)
Q Consensus 183 ---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~-----------------~~~~~~~~~~~~~~i~~l~ 234 (443)
.++.++.+|.++++|..+++.+......... .+ ....+...+++ .-..++
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~--~w~~~a 395 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAH--DWQPMS 395 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSS--CSSCCE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccccc--CCCcce
Confidence 7888999999999999999876322211100 00 00000001111 112378
Q ss_pred EeCCCCEEEEEec---------------------------------------------CCeEEEEECCCCeeeEEeeccC
Q 013436 235 FSTDGRELVAGSS---------------------------------------------DDCIYVYDLEANKLSLRILAHT 269 (443)
Q Consensus 235 ~~~~~~~l~~~~~---------------------------------------------dg~i~iwd~~~~~~~~~~~~~~ 269 (443)
++|+..++++... +|.|+.||+.+++.+.++..+.
T Consensus 396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~ 475 (689)
T 1yiq_A 396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT 475 (689)
T ss_dssp EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS
T ss_pred ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC
Confidence 8888877776532 3789999999999888876543
Q ss_pred CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCC-CeEEEEECCCCCEEE
Q 013436 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLI 332 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~ 332 (443)
++....+. ..+.+++.++.|+.++.||.+ +++.+..+..... ...-+.|..+|+.++
T Consensus 476 -~~~~g~~~-tagglvf~gt~dg~l~a~D~~----tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 476 -IFNGGTLS-TAGNLVFEGSADGRVIAYAAD----TGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp -SCCCCEEE-ETTTEEEEECTTSEEEEEETT----TCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred -CccCccce-ECCCEEEEECCCCcEEEEECC----CCccceeeeCCCCcccCceEEEECCEEEE
Confidence 33333444 456788899999999999998 8999888764432 224466677887544
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.69 E-value=3.2e-06 Score=71.79 Aligned_cols=156 Identities=8% Similarity=-0.005 Sum_probs=102.8
Q ss_pred cceEEEEEECCCCCeEEEEECCC--eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe
Q 013436 169 RWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (443)
Q Consensus 169 ~~~v~~i~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 246 (443)
..-...+.|+ ++.++.+.+.+| .|+.+|+.+++......+.... --..+++. +..|....
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~---------------FgeGit~~--g~~ly~lt 103 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY---------------FGEGISDW--KDKIVGLT 103 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC---------------CEEEEEEE--TTEEEEEE
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc---------------ceeEEEEe--CCEEEEEE
Confidence 3346788898 677777777766 8999999999876655432210 11223333 44455544
Q ss_pred -cCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC----C-CCeE
Q 013436 247 -SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----L-EGIT 320 (443)
Q Consensus 247 -~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~-~~v~ 320 (443)
.++.+.+||..+.+.+.++..... -..+++ . ++.|+.+..++.|.++|.. +.+.+..+.-. . ..++
T Consensus 104 w~~~~v~v~D~~t~~~~~ti~~~~e-G~glt~--d-g~~L~~SdGs~~i~~iDp~----T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 104 WKNGLGFVWNIRNLRQVRSFNYDGE-GWGLTH--N-DQYLIMSDGTPVLRFLDPE----SLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp SSSSEEEEEETTTCCEEEEEECSSC-CCCEEE--C-SSCEEECCSSSEEEEECTT----TCSEEEEEECEETTEECCCEE
T ss_pred eeCCEEEEEECccCcEEEEEECCCC-ceEEec--C-CCEEEEECCCCeEEEEcCC----CCeEEEEEEeccCCccccccc
Confidence 578999999999999988875332 234443 3 4455555557889999998 66666655431 1 3456
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
.+.|. +|+.++..-.++.|.+.|..+++..
T Consensus 176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVT 205 (262)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEECTTTCBEE
T ss_pred eeEEE-CCEEEEEEccCCeEEEEECCCCcEE
Confidence 67776 6766666656889999999985543
No 253
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.62 E-value=0.00014 Score=64.97 Aligned_cols=184 Identities=10% Similarity=0.007 Sum_probs=109.8
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CCCeEEEEECCCC----ceeccccceec
Q 013436 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEI 212 (443)
Q Consensus 138 ~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~~~~ 212 (443)
+|+.+.. ..|+..|+.+....... .. -..+..++|++++..|..+. ..+.|..+++.+. ....... .
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~---~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--~- 74 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLI---PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R- 74 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEE---CS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--S-
T ss_pred EEEEECC-CeEEEEECCCcceEehh---cC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe--C-
Confidence 3444433 56899999876433221 11 22478899998766555554 5679999998762 1111110 0
Q ss_pred ccCceeeccCCCCceecEEEEEEeCCCCEEE-EEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCC
Q 013436 213 HDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291 (443)
Q Consensus 213 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 291 (443)
+ -.....+++.+.+..|+ +-...+.|.++|+........+.........+++.|..+.++++....
T Consensus 75 --~-----------~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~ 141 (316)
T 1ijq_A 75 --D-----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 141 (316)
T ss_dssp --S-----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred --C-----------CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence 0 01345788887555454 445678999999876543333333445678999974455555554333
Q ss_pred -CeEEEEecccCCCCCceeeee-cCCCCCeEEEEECCCCCEEEEE-eCCCCEEEEeCCC
Q 013436 292 -NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (443)
Q Consensus 292 -~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 347 (443)
+.|...++. +.....+ ...-...+.+++++++..|..+ ...+.|..+|+..
T Consensus 142 ~~~I~~~~~d-----G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 142 PAKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp SCEEEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCeEEEEcCC-----CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 688888874 3333333 2234567899999876666544 4567899999864
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.62 E-value=1.7e-05 Score=76.99 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=98.5
Q ss_pred EEECCCCCE----EEEEECCCeEEEEECCCCeEEEEeeecCC-ccceEEE-EEECCCCCeEEEEE------CCCeEEEEE
Q 013436 130 SQFSADGSL----FVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTD-TSLSPDQRHLVYAS------MSPIVHIVD 197 (443)
Q Consensus 130 ~~~s~~~~~----l~~g~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~-i~~s~~~~~l~~~~------~dg~i~iwd 197 (443)
++++|.+.. |++++.|+.|..+|..+|+.+-+...... ....+.+ ... .++ .+++++ .++.|+.+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEE
Confidence 345444434 88888899999999999977655432210 0001110 001 134 455544 378999999
Q ss_pred CCCCceeccccceecccCc------eee-------------ccCCC-Cc-eecE-EEEEEeCCCCEEEEEecC-------
Q 013436 198 VGSGTMESLANVTEIHDGL------DFS-------------AADDG-GY-SFGI-FSLKFSTDGRELVAGSSD------- 248 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~------~~~-------------~~~~~-~~-~~~i-~~l~~~~~~~~l~~~~~d------- 248 (443)
..+++..-........... .+. ..... .+ ...+ ..+++.++...++.++.+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 9999875433322110000 000 00000 00 0001 134566777777777655
Q ss_pred ---------CeEEEEECCCCeeeEEeeccCCC------e---EEEEEeCCCC---CEEEEeeCCCeEEEEecccCCCCCc
Q 013436 249 ---------DCIYVYDLEANKLSLRILAHTSD------V---NTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVKGK 307 (443)
Q Consensus 249 ---------g~i~iwd~~~~~~~~~~~~~~~~------v---~~i~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~ 307 (443)
+.|.-+|..+++.+..+...... . .-+.....++ ..++.++.+|.+.++|.+ +++
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~----tG~ 344 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRT----DGA 344 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETT----TCC
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECC----CCC
Confidence 38999999999988776632211 1 1122211356 567788999999999998 666
Q ss_pred eeeee
Q 013436 308 PAGVL 312 (443)
Q Consensus 308 ~~~~~ 312 (443)
.+...
T Consensus 345 ~lw~~ 349 (599)
T 1w6s_A 345 LVSAN 349 (599)
T ss_dssp EEEEE
T ss_pred Eeecc
Confidence 65543
No 255
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.62 E-value=0.0001 Score=66.79 Aligned_cols=197 Identities=10% Similarity=0.071 Sum_probs=120.5
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CCCeEEEEECCCCc
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT 202 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 202 (443)
.+...|.+..++. +|+.+. ...|+..++....... . ..... .+..++|++.+..|..+. ..+.|+.+++....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~-~--~~~~~-~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTL-L--LNNLE-NAIALDFHHRRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEE-E--ECSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEE-e--ecCCC-ceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence 3445676666644 444443 3568888887653322 1 12222 378999998766665554 56789999988765
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEE-EEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 281 (443)
...+.... ......+++.+.+..| ++-...+.|.+.++........+.........+++.|..
T Consensus 107 ~~~~~~~~----------------~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~ 170 (349)
T 3v64_C 107 VEEVVSTG----------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME 170 (349)
T ss_dssp CEEEECSS----------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTT
T ss_pred ceEEEeCC----------------CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCc
Confidence 33221110 0034568888755545 444556789999987654333333444567899998556
Q ss_pred CCEEEEeeCC-CeEEEEecccCCCCCceeeeec-CCCCCeEEEEECCCCCEEE-EEeCCCCEEEEeCCC
Q 013436 282 GHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRK 347 (443)
Q Consensus 282 ~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~ 347 (443)
+.++++-..+ +.|..+++. +.....+. ......+.|+++|++..|. +-...+.|..+|+..
T Consensus 171 g~ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 171 GTIYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp TEEEEEECSSSCEEEEEETT-----SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CeEEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 6666665555 788888875 33333332 2334578999998666555 444567899998764
No 256
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.61 E-value=6.8e-07 Score=80.53 Aligned_cols=184 Identities=15% Similarity=0.176 Sum_probs=113.4
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
...+.++...++|.++ .++.+ |..+|. ++..+... ...........+. +..+.+++.++.|..+|.. ++.
T Consensus 59 ~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~---~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~ 128 (330)
T 3hxj_A 59 EIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRF---DTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE 128 (330)
T ss_dssp GEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGS---CC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE
T ss_pred CCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEE---ECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE
Confidence 3445777777777644 44444 888886 44222111 1111111122222 5567788889999999987 554
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (443)
........ ..+.++...+++. +.+++.++.|..+|.. ++....+......+.++... .++.
T Consensus 129 ~~~~~~~~----------------~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d-~~g~ 189 (330)
T 3hxj_A 129 KWRFKTKK----------------AIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG-KDGT 189 (330)
T ss_dssp EEEEECSS----------------CCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTCC
T ss_pred EEEEcCCC----------------ceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc-CCCE
Confidence 32221110 1234455666676 6667788999999998 77766666555667777774 5666
Q ss_pred EEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 284 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
+++ ++ +.|..+| . .++.+.........+.++...+++.+ ..++.++.|..+|.
T Consensus 190 l~v-~t--~~l~~~d-~----~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 190 IYF-GS--DKVYAIN-P----DGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP 242 (330)
T ss_dssp EEE-ES--SSEEEEC-T----TSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECT
T ss_pred EEE-Ee--CEEEEEC-C----CCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECC
Confidence 554 44 7889999 5 66666666655567888888888764 44556777888874
No 257
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=2.7e-05 Score=72.74 Aligned_cols=154 Identities=10% Similarity=0.053 Sum_probs=95.6
Q ss_pred ceEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC-C----eEEEEECC
Q 013436 126 RAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P----IVHIVDVG 199 (443)
Q Consensus 126 ~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-g----~i~iwd~~ 199 (443)
....++++| ++..|+++...+.|+.+|+.++. +..... .......++|+++++.|+++... + .+.+++..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 457889998 45556666555889999998764 332222 22348899999999966666542 1 23334432
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEee-ccCCCeEEEEE
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCF 277 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~ 277 (443)
+.......+... .....++++| ++.++++-..++.|+.++...+....... ........++|
T Consensus 214 -g~~~~~~~l~~~---------------~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~ 277 (430)
T 3tc9_A 214 -SGFKVITELTKG---------------QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF 277 (430)
T ss_dssp -GTSCSEEEEEEC---------------SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred -CceeeeeeeccC---------------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence 222111011000 0345688999 67766666677899999998776422222 22245688999
Q ss_pred eCCCCC-EEEEeeCCCeEEEEecc
Q 013436 278 GDESGH-LIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 278 ~~~~~~-~l~~~~~d~~i~iwd~~ 300 (443)
+ ++++ ++++-...+.|..++..
T Consensus 278 ~-pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 278 H-PSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp C-TTSSEEEEEETTTTEEEEEEEE
T ss_pred c-CCCCEEEEEECCCCEEEEEeCC
Confidence 7 7787 45555567889998875
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.54 E-value=3.9e-05 Score=74.57 Aligned_cols=170 Identities=16% Similarity=0.181 Sum_probs=96.6
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCC------ccceEEEEEEC-CCCC-eEEEEE------CCCeEEEEECCCC
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKS------LRWTVTDTSLS-PDQR-HLVYAS------MSPIVHIVDVGSG 201 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~v~~i~~s-~~~~-~l~~~~------~dg~i~iwd~~~~ 201 (443)
+..+++++.|+.|.-+|..+|+.+-+...... ...++ +.=. .+++ .+++++ .++.|..+|..++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG 194 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG 194 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence 56788888999999999999977655433221 01111 1111 1233 455544 3789999999999
Q ss_pred ceeccccceecc----cCceeecc----------------------CCCCceecEEEEEEeCCCCEEEEEec--------
Q 013436 202 TMESLANVTEIH----DGLDFSAA----------------------DDGGYSFGIFSLKFSTDGRELVAGSS-------- 247 (443)
Q Consensus 202 ~~~~~~~~~~~~----~~~~~~~~----------------------~~~~~~~~i~~l~~~~~~~~l~~~~~-------- 247 (443)
+..-........ .+...... ...+.. .-..+++.|+...++++..
T Consensus 195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~-~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGA-PWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCC-CCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCcc-ccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 875432211000 00000000 000000 0124567777777777663
Q ss_pred ------------C----CeEEEEECCCCeeeEEeec--cCC----CeEEEEEeC---CCC---CEEEEeeCCCeEEEEec
Q 013436 248 ------------D----DCIYVYDLEANKLSLRILA--HTS----DVNTVCFGD---ESG---HLIYSGSDDNLCKVWDR 299 (443)
Q Consensus 248 ------------d----g~i~iwd~~~~~~~~~~~~--~~~----~v~~i~~~~---~~~---~~l~~~~~d~~i~iwd~ 299 (443)
| +.|.-+|..+++.+..+.. |.. .+....+.. .++ ..++.++.+|.++++|.
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~ 353 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDR 353 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEET
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEEC
Confidence 2 5899999999998877653 211 111111111 345 37888999999999999
Q ss_pred ccCCCCCceeeee
Q 013436 300 RCLNVKGKPAGVL 312 (443)
Q Consensus 300 ~~~~~~~~~~~~~ 312 (443)
+ +++.+..+
T Consensus 354 ~----tG~~lw~~ 362 (582)
T 1flg_A 354 S----NGKLQNAF 362 (582)
T ss_dssp T----TCCEEEEE
T ss_pred C----CCCEeccc
Confidence 8 66665443
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.54 E-value=2.5e-05 Score=70.04 Aligned_cols=196 Identities=14% Similarity=0.035 Sum_probs=118.9
Q ss_pred CceEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEeee-cCC-ccceEEEEEECC-CCCeEEEEEC-----------
Q 013436 125 SRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDIL-AKS-LRWTVTDTSLSP-DQRHLVYASM----------- 189 (443)
Q Consensus 125 ~~v~~~~~s~-~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~-~~~-~~~~v~~i~~s~-~~~~l~~~~~----------- 189 (443)
..+..+++.+ +++ |+++...+.|..+|..++. +..... ..+ .-.....+++.+ +|++.++-..
T Consensus 80 ~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 80 GRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CCEEEEEEETTTTE-EEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 3578999998 565 5555455668888877652 211111 111 112378899999 8876665432
Q ss_pred ------CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEE-ecCCeEEEEECCCCe--
Q 013436 190 ------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANK-- 260 (443)
Q Consensus 190 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~-- 260 (443)
++.|..+|..+++........ .....++++|+++.|+++ +..+.|.+|++....
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~~~-----------------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~ 220 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLKEL-----------------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG 220 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEEEE-----------------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT
T ss_pred hcccCCCceEEEEeCCCCEEEEeccCC-----------------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC
Confidence 367888888766543221100 024468999999866665 556899999987521
Q ss_pred eeEEeeccCCCeEEEEEeCCCCCEEEEeeC----------CCeEEEEecccCCCCCceeeeecCC----CCCeEEEEECC
Q 013436 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSD----------DNLCKVWDRRCLNVKGKPAGVLMGH----LEGITFIDSRG 326 (443)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~----~~~v~~~~~~~ 326 (443)
....+....+ ...+++. +++++.++... .+.|..+|. .++.+..+... ...++.+++ .
T Consensus 221 ~~~~~~~~~g-P~gi~~d-~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-----~G~~~~~~~~~~g~~~~~~~~~~~-~ 292 (322)
T 2fp8_A 221 TAEVLVKIPN-PGNIKRN-ADGHFWVSSSEELDGNMHGRVDPKGIKFDE-----FGNILEVIPLPPPFAGEHFEQIQE-H 292 (322)
T ss_dssp CEEEEEECSS-EEEEEEC-TTSCEEEEEEEETTSSTTSCEEEEEEEECT-----TSCEEEEEECCTTTTTSCCCEEEE-E
T ss_pred ccceEEeCCC-CCCeEEC-CCCCEEEEecCcccccccCCCccEEEEECC-----CCCEEEEEECCCCCccccceEEEE-e
Confidence 1112211223 7788885 77887666544 456788876 45555555433 234666666 3
Q ss_pred CCCEEEEEeCCCCEEEEeCCC
Q 013436 327 DGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+++++++...++.|..+++..
T Consensus 293 ~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 293 DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTEEEEECSSCSEEEEEEC--
T ss_pred CCEEEEeecCCCceEEEeccc
Confidence 666666666788899999865
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.53 E-value=3.8e-05 Score=64.64 Aligned_cols=161 Identities=12% Similarity=-0.001 Sum_probs=104.0
Q ss_pred CccceEEEEEECCCCCeEEEEECCC--eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEE
Q 013436 167 SLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (443)
Q Consensus 167 ~~~~~v~~i~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 244 (443)
....-...+.|++ +.++.+.+.+| .|+.+|+.+++......+.... --..+++. .++..+.
T Consensus 18 d~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~---------------fgeGi~~~-~~~ly~l 80 (243)
T 3mbr_X 18 DTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY---------------FGAGIVAW-RDRLIQL 80 (243)
T ss_dssp CTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC---------------CEEEEEEE-TTEEEEE
T ss_pred CCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc---------------ceeEEEEe-CCEEEEE
Confidence 3344577899986 55666666654 8999999999887655433211 01223443 2344444
Q ss_pred EecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC-----CCe
Q 013436 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-----EGI 319 (443)
Q Consensus 245 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~~v 319 (443)
.-.++.+.+||..+.+.+.++..... -..++. ..+ .|+.+..++.|.++|.. +.+.+..+.-.. ..+
T Consensus 81 tw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt~--dg~-~L~vSdgs~~l~~iDp~----t~~~~~~I~V~~~g~~~~~l 152 (243)
T 3mbr_X 81 TWRNHEGFVYDLATLTPRARFRYPGE-GWALTS--DDS-HLYMSDGTAVIRKLDPD----TLQQVGSIKVTAGGRPLDNL 152 (243)
T ss_dssp ESSSSEEEEEETTTTEEEEEEECSSC-CCEEEE--CSS-CEEEECSSSEEEEECTT----TCCEEEEEECEETTEECCCE
T ss_pred EeeCCEEEEEECCcCcEEEEEeCCCC-ceEEee--CCC-EEEEECCCCeEEEEeCC----CCeEEEEEEEccCCcccccc
Confidence 45688999999999999998875332 245554 344 44444568899999998 666665554321 345
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccc
Q 013436 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (443)
+.+.|. +|+.++..-.+..|.+.|.++++....
T Consensus 153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 153 NELEWV-NGELLANVWLTSRIARIDPASGKVVAW 185 (243)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEE
Confidence 667776 676665555678999999999654433
No 261
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.53 E-value=0.00027 Score=71.77 Aligned_cols=198 Identities=8% Similarity=0.054 Sum_probs=128.3
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeec-----CCccceEEEEEECCCCCeEEEEECCCeEEEEEC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 198 (443)
...|.++...++|.+ ..|+.++-|..|+..++....-.... .-....|.++...+++..|.+|+.++-|.+||.
T Consensus 356 ~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence 456999999998884 45667777999998876433221111 012346999998888875777888777999999
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec------cCCCe
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA------HTSDV 272 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v 272 (443)
.+++......... ......|.++...++|.+.+ |+.+| |.+||..+++....... ....|
T Consensus 435 ~~~~~~~~~~~~~------------~l~~~~v~~i~~d~~g~lwi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i 500 (795)
T 4a2l_A 435 NSGQVENFNQRNS------------QLVNENVYAILPDGEGNLWL-GTLSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQI 500 (795)
T ss_dssp TTCCEEEECTTTS------------CCSCSCEEEEEECSSSCEEE-EESSC-EEEEETTTTEEEECCBCTTCCBCCCCCE
T ss_pred CCCcEEEeecCCC------------CcCCCeeEEEEECCCCCEEE-EecCc-eeEEeCCCCeEEEccccccccccCCceE
Confidence 8876543321100 01223689999888887544 44555 89999887764322111 23568
Q ss_pred EEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec-------CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
.++... .++.+.+. +. +-|..||.. .... .+. .....|.++...++|.+.++.. . -|..||.
T Consensus 501 ~~i~~d-~~g~lWig-t~-~Gl~~~~~~----~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~ 569 (795)
T 4a2l_A 501 TTLFRD-SHKRLWIG-GE-EGLSVFKQE----GLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNE 569 (795)
T ss_dssp EEEEEC-TTCCEEEE-ES-SCEEEEEEE----TTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEET
T ss_pred EEEEEC-CCCCEEEE-eC-CceEEEeCC----CCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECC
Confidence 888885 66765554 44 458888876 3333 221 2345789999999998665543 3 5888987
Q ss_pred CC
Q 013436 346 RK 347 (443)
Q Consensus 346 ~~ 347 (443)
.+
T Consensus 570 ~~ 571 (795)
T 4a2l_A 570 KD 571 (795)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.51 E-value=3.6e-05 Score=65.41 Aligned_cols=154 Identities=6% Similarity=-0.044 Sum_probs=103.2
Q ss_pred ceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC
Q 013436 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (443)
Q Consensus 170 ~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg 249 (443)
.-...+.|+ ++.++++.+.+|.|+++|+.+++..... +.... --..+++.. ++..+..-.++
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~---------------FgeGit~~g-~~Ly~ltw~~~ 116 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI---------------FAEGLASDG-ERLYQLTWTEG 116 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC---------------CEEEEEECS-SCEEEEESSSC
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc---------------ceeEEEEeC-CEEEEEEccCC
Confidence 345678887 4566777888899999999999876654 32210 112244432 34444445688
Q ss_pred eEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCC-----CCeEEEEE
Q 013436 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-----EGITFIDS 324 (443)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~~v~~~~~ 324 (443)
.+.+||..+.+.+.++.... .-..+++ +++.|+.+..++.|.++|.. +.+.+..+.-.. ..++.+.|
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~-eGwGLt~---Dg~~L~vSdGs~~l~~iDp~----T~~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSG-EGWGLCY---WNGKLVRSDGGTMLTFHEPD----GFALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCCEEE---ETTEEEEECSSSEEEEECTT----TCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEEECCcCcEEEEEeCCC-ceeEEec---CCCEEEEECCCCEEEEEcCC----CCeEEEEEEeCCCCcccccccccEE
Confidence 99999999999999887532 2245554 35566666668899999998 666666554311 24567777
Q ss_pred CCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 325 RGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 325 ~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
. +|+.++..-.++.|.+.|..+++.
T Consensus 189 ~-dG~lyanvw~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 189 A-NGVIYANIWHSSDVLEIDPATGTV 213 (268)
T ss_dssp E-TTEEEEEETTCSEEEEECTTTCBE
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCcE
Confidence 7 776665555678999999998544
No 263
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.51 E-value=0.00026 Score=65.48 Aligned_cols=185 Identities=10% Similarity=-0.009 Sum_probs=112.0
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CCCeEEEEECCCCc----eecccccee
Q 013436 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT----MESLANVTE 211 (443)
Q Consensus 137 ~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~ 211 (443)
.+|+.+. ...|+..++........ .. .-..+..++|++.+..|..+. ..+.|+.+++.... ...... .
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~---~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~ 156 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSL---IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R 156 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEE---EC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--S
T ss_pred ceeEEec-cceeEEEccCCcceeEe---cc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--C
Confidence 3454443 46899999887533222 11 223488999998766665554 56788888886532 111110 0
Q ss_pred cccCceeeccCCCCceecEEEEEEeCCCCEE-EEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeC
Q 013436 212 IHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD 290 (443)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 290 (443)
.......+++.+.+..| ++-...+.|.+.++........+.........|++.|..+.++.+-..
T Consensus 157 --------------~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~ 222 (400)
T 3p5b_L 157 --------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 222 (400)
T ss_dssp --------------SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS
T ss_pred --------------CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC
Confidence 01146778998844444 444567889999987665444444445567899997545555554423
Q ss_pred -CCeEEEEecccCCCCCceeeee-cCCCCCeEEEEECCCCCEEEEE-eCCCCEEEEeCCC
Q 013436 291 -DNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (443)
Q Consensus 291 -d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 347 (443)
.+.|...++. +.....+ ...-...+.|++++++..|..+ ...+.|..+|+..
T Consensus 223 ~~~~I~~~~~d-----G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 223 TPAKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp SSCCEEEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCEEEEEeCC-----CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 4688888875 3333333 2333567899999877666555 4467899998865
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.50 E-value=0.00014 Score=67.03 Aligned_cols=195 Identities=10% Similarity=0.064 Sum_probs=117.3
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE-ECCCeEEEEECCCCcee
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTME 204 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~ 204 (443)
.-.|.+..+. .+|+.+. ...|+.+++........ .... ..+..++|.+.+..|..+ ...+.|+.+++......
T Consensus 78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~---~~~~-~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLL---LNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SSCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEE---ECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred CCeECCcccc-ceeEeec-CccceeeccCCCcEEEE---ecCC-CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence 3446565553 3444443 35688888876532221 1222 237889999866655554 45678999998876533
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEE-EEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCC
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (443)
.+..... .....+++.+.+..|+ +-...+.|.+.++........+.........+++.|..+.
T Consensus 152 ~~~~~~~----------------~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ 215 (386)
T 3v65_B 152 EVVSTGL----------------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 215 (386)
T ss_dssp EEECSSC----------------SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred EEEeCCC----------------CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence 2211100 0234578887555454 4455678999998755433333334456789999755565
Q ss_pred EEEEeeCC-CeEEEEecccCCCCCceeeee-cCCCCCeEEEEECCCCCEEE-EEeCCCCEEEEeCCC
Q 013436 284 LIYSGSDD-NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRK 347 (443)
Q Consensus 284 ~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~ 347 (443)
++++-... +.|..+++. +.....+ .......+.|+++|++..|. +-...+.|..+|+..
T Consensus 216 ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 216 IYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEEEECSSSCEEEEEETT-----SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred EEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 55555455 788888875 3333232 22334578999998665555 444567788888764
No 265
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.48 E-value=0.00028 Score=71.67 Aligned_cols=203 Identities=12% Similarity=0.143 Sum_probs=130.4
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeee----cCCccceEEEEEECCCCCeEEEEECCCeEEEEECC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL----AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 199 (443)
...|.++...++|.+.+ |+.+ -|.+||..++........ ..-....|.++...++|. |.+|+.++-|..|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 45799999999988555 4454 589999887743321111 011234699999988886 6667777778888876
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec--------cCCC
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--------HTSD 271 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~ 271 (443)
++.......... .. .-....|.++...++|. |-+|+.++-|..||..+++....... ....
T Consensus 339 ~~~~~~~~~~~~-~~---------~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (795)
T 4a2l_A 339 RNRFKNIRNIPY-KN---------SLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNN 407 (795)
T ss_dssp GGSSEEECCCTT-SS---------SCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSC
T ss_pred cccceEEcCCCC-CC---------CCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCcc
Confidence 554322111000 00 01123699999988887 55677776699999887754332211 2356
Q ss_pred eEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec----CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM----GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
|.+++.. .++++|..|+.++-|.+||.. .++...... .....|.++...++|++.+... + -+.+||..+
T Consensus 408 v~~i~~d-~~g~~lWigt~~~Gl~~~d~~----~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~ 480 (795)
T 4a2l_A 408 IKAVYVD-EKKSLVYIGTHAGGLSILHRN----SGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQ 480 (795)
T ss_dssp EEEEEEE-TTTTEEEEEETTTEEEEEETT----TCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTT
T ss_pred EEEEEEc-CCCCEEEEEeCcCceeEEeCC----CCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCC
Confidence 8888885 677746677877789999986 433322211 2345799999998888666554 4 588999776
No 266
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.45 E-value=1.7e-05 Score=78.58 Aligned_cols=198 Identities=14% Similarity=0.140 Sum_probs=122.9
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccc-------eE-EEEEECCCCCeEEEEECCCeEEEEECCCCceeccc
Q 013436 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-------TV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (443)
Q Consensus 136 ~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~v-~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 207 (443)
+..+++++.++.|.-+|..+|+.+-+......... .+ ..+++ .+..+++++.|+.|..+|..+++..-..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 55677777889999999999977765432211100 00 11122 3567888889999999999999876444
Q ss_pred cceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec------CCeEEEEECCCCeeeEEeeccC---C--------
Q 013436 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHT---S-------- 270 (443)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~---~-------- 270 (443)
........... ...++ .. ++ .++++.. +|.|+.+|.++++.+.++.... .
T Consensus 144 ~~~~~~~~~~~-------~~~P~----v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 210 (668)
T 1kv9_A 144 QTTDPAKPYSI-------TGAPR----VV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL 210 (668)
T ss_dssp ECSCTTSSCBC-------CSCCE----EE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred ccCCCCCccee-------cCCCE----EE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence 32211000000 00111 11 34 4555543 5899999999999887765211 0
Q ss_pred --------------------CeEEEEEeCCCCCEEEEeeCCC-------------------eEEEEecccCCCCCceeee
Q 013436 271 --------------------DVNTVCFGDESGHLIYSGSDDN-------------------LCKVWDRRCLNVKGKPAGV 311 (443)
Q Consensus 271 --------------------~v~~i~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~ 311 (443)
....+++. +...+++.++.++ .|..+|.+ +++.+..
T Consensus 211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~----tG~~~W~ 285 (668)
T 1kv9_A 211 REAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD----TGKLAWH 285 (668)
T ss_dssp HHHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEEEE
T ss_pred ccccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC----CCceeeE
Confidence 11235675 5667788887765 38999998 7887776
Q ss_pred ecC--CC-------CCeEEEEECCCCC---EEEEEeCCCCEEEEeCCCCCCccc
Q 013436 312 LMG--HL-------EGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNAS 353 (443)
Q Consensus 312 ~~~--~~-------~~v~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~ 353 (443)
+.. |. .+.....+..+|+ .++.++.+|.++++|..+++.+..
T Consensus 286 ~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 286 YQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA 339 (668)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred eecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence 653 22 2233233333564 688899999999999999887643
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.42 E-value=4.1e-05 Score=77.08 Aligned_cols=156 Identities=9% Similarity=0.019 Sum_probs=94.5
Q ss_pred eEEEEEEC-CCCCeEEEEEC-CC----eEEEEECCCC-ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEE
Q 013436 171 TVTDTSLS-PDQRHLVYASM-SP----IVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (443)
Q Consensus 171 ~v~~i~~s-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 243 (443)
.+...+|| |||++||.+.. +| .|+++|+.++ +... ..+.. ....++|+|||+.|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~~-----------------~~~~~~WspDg~~l~ 236 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVSG-----------------TNGEIVWGPDHTSLF 236 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEEE-----------------ECSCCEECSSTTEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccccC-----------------ceeeEEEecCCCEEE
Confidence 68889999 99999886543 33 5999999988 5311 01110 233588999998888
Q ss_pred EEecC-----CeEEEEECCCCee--eEEee-ccCCCeEEEEEeCCCCCEEEEeeC---CCeEEEEecccCCCCCce--ee
Q 013436 244 AGSSD-----DCIYVYDLEANKL--SLRIL-AHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKP--AG 310 (443)
Q Consensus 244 ~~~~d-----g~i~iwd~~~~~~--~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~--~~ 310 (443)
....+ ..|+++++.++.. ...+. ........+.|+ +++++|+..+. ...|.++|+... .... ..
T Consensus 237 y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~l~~~d~~~~--~~~~~~~~ 313 (751)
T 2xe4_A 237 YVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA-ADTNTLCIGSQSPETAEVHLLDLRKG--NAHNTLEI 313 (751)
T ss_dssp EEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC-TTSSEEEEEEECSSCEEEEEEESSSC--TTCCCEEE
T ss_pred EEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC-CCCCEEEEEecCCCCceEEEEECCCC--CCCceeEE
Confidence 77665 3688999987642 22222 223446678898 78887776552 346888888622 1122 22
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEeCC--C--CEEEEeCCC
Q 013436 311 VLMGHLEGITFIDSRGDGRYLISNGKD--Q--AIKLWDIRK 347 (443)
Q Consensus 311 ~~~~~~~~v~~~~~~~~~~~l~s~~~d--g--~i~iwd~~~ 347 (443)
..........++.|+..+.+++....+ + .|..+|+.+
T Consensus 314 l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 314 VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 223344556666665444444454443 3 455556543
No 268
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.41 E-value=0.00036 Score=65.16 Aligned_cols=198 Identities=10% Similarity=0.040 Sum_probs=112.8
Q ss_pred ceEEEEECCC--CCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC----e-EEEEEC
Q 013436 126 RAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----I-VHIVDV 198 (443)
Q Consensus 126 ~v~~~~~s~~--~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg----~-i~iwd~ 198 (443)
....++|+|+ +..|+.+...+.|+.+|..++.... ... .......++++++++ |+++...+ . +...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~---~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTT---NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECC---CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eec---CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 4578999995 4445555444889999998774332 221 223488999999999 55544322 1 222222
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEee--ccCCCeEEE
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTV 275 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i 275 (443)
..+ ......... -.....++++| ++.++++-..++.|+.+|..++.....+. ........+
T Consensus 215 ~~~-~~~~~~~~~---------------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~i 278 (433)
T 4hw6_A 215 ASG-FTERLSLCN---------------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHI 278 (433)
T ss_dssp GGT-TCCEEEEEE---------------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEE
T ss_pred CCC-eeccccccc---------------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccE
Confidence 111 100000000 01344588899 66655555567889999998776523322 112233569
Q ss_pred EEeCCCCC-EEEEeeCCCeEEEEecccCCCCCceeeeecC---------------CCCCeEEEEE---------CCCCCE
Q 013436 276 CFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---------------HLEGITFIDS---------RGDGRY 330 (443)
Q Consensus 276 ~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------~~~~v~~~~~---------~~~~~~ 330 (443)
+++ ++++ ++++-...+.|..++.............+.+ .-.....+++ .+++.+
T Consensus 279 a~d-pdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l 357 (433)
T 4hw6_A 279 VWH-PTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF 357 (433)
T ss_dssp EEC-TTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred EEe-CCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence 997 7777 4455556788999886421000000111111 1123567888 777777
Q ss_pred EEEEeCCCCEEEEeC
Q 013436 331 LISNGKDQAIKLWDI 345 (443)
Q Consensus 331 l~s~~~dg~i~iwd~ 345 (443)
+++-...+.|+.++.
T Consensus 358 yvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 358 YFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEETTTTEEEEECT
T ss_pred EEEECCCCEEEEECC
Confidence 777777788888874
No 269
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.41 E-value=0.00042 Score=59.14 Aligned_cols=166 Identities=11% Similarity=0.153 Sum_probs=101.6
Q ss_pred ecCCccceEEEEEECCCCCeE-EEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEE
Q 013436 164 LAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (443)
Q Consensus 164 ~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 242 (443)
...+....+..++|+|++..| ++...++.|...|.. ++......+... .....+++.+++.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~---------------~D~EGIa~~~~g~~~ 84 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV---------------KDLETIEYIGDNQFV 84 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC---------------SSEEEEEECSTTEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC---------------CChHHeEEeCCCEEE
Confidence 344555579999999986655 457788899999987 655444332211 146678888888766
Q ss_pred EEEecCCeEEEEECCCCee---eEEee------ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec
Q 013436 243 VAGSSDDCIYVYDLEANKL---SLRIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 313 (443)
Q Consensus 243 ~~~~~dg~i~iwd~~~~~~---~~~~~------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 313 (443)
++.-.++.+.++++..... +.... ........++|. +.++.|+++.......+|.+... .....+..+.
T Consensus 85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d-~~~~~L~va~E~~p~~i~~~~g~-~~~~~l~i~~ 162 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYS-RQDHTFWFFKEKNPIEVYKVNGL-LSSNELHISK 162 (255)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEE-TTTTEEEEEEESSSEEEEEEEST-TCSSCCEEEE
T ss_pred EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEe-CCCCEEEEEECcCCceEEEEccc-ccCCceeeec
Confidence 6655678899998765542 22221 123456899998 55555555554444455554311 0111222221
Q ss_pred -------CCCCCeEEEEECCCC-CEEEEEeCCCCEEEEeCCC
Q 013436 314 -------GHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 314 -------~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~ 347 (443)
.+...+..++++|.. ++++.+.....+.++|...
T Consensus 163 ~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 163 DKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp CHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred chhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence 133467889999954 5556666677888888765
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.39 E-value=9.6e-06 Score=80.46 Aligned_cols=205 Identities=13% Similarity=0.068 Sum_probs=115.3
Q ss_pred CceEEEEECCCCCEEEEEEC-CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CC-----CeEEEEE
Q 013436 125 SRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MS-----PIVHIVD 197 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~d-----g~i~iwd 197 (443)
....++++.+++++++.|+. +..+.+||..++.... .......+. -.+++..++++.++.|+ .+ ..+.+||
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeE-CCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 33445788899999999984 4579999998874332 222222222 23455667999999988 34 4799999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec---------CCeEEEEECCCCeeeEEeecc
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRILAH 268 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~ 268 (443)
..+++........... . ....+. ..+..++..++.|+. ...+..||..+.........+
T Consensus 321 ~~t~~W~~~~~~~~~p------~-~~~~~~-----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~ 388 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNP------M-LTADKQ-----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388 (656)
T ss_dssp TTTTEEEEETTSCSGG------G-CCCCTT-----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEEC
T ss_pred CCCCcceeCCCccccc------c-cccccc-----ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcc
Confidence 9887754432110000 0 000000 011223444444433 346788998877644333222
Q ss_pred C---------CCeEEEEEeCCCCCEEEEeeCCC-----------eEEEEecccCCCCCceeeee--cCCCCC-eEEEEEC
Q 013436 269 T---------SDVNTVCFGDESGHLIYSGSDDN-----------LCKVWDRRCLNVKGKPAGVL--MGHLEG-ITFIDSR 325 (443)
Q Consensus 269 ~---------~~v~~i~~~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~--~~~~~~-v~~~~~~ 325 (443)
. ..-.++.+...+++++++|+.++ .|.+||.. ...-.... ..+... -.+....
T Consensus 389 ~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~----~~~W~~~~~~~mp~~R~~~~~~~l 464 (656)
T 1k3i_A 389 QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTFHTSVVL 464 (656)
T ss_dssp EETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT----SCCEEEECTTCCSSCCBSCEEEEC
T ss_pred ccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCC----CCCeeEEccCCCCCCcccCCeEEC
Confidence 1 12345555335778888888543 57778875 33222211 111222 2344567
Q ss_pred CCCCEEEEEeCC-----------CCEEEEeCCC
Q 013436 326 GDGRYLISNGKD-----------QAIKLWDIRK 347 (443)
Q Consensus 326 ~~~~~l~s~~~d-----------g~i~iwd~~~ 347 (443)
|++++++.|+.+ ..+.+||..+
T Consensus 465 ~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 465 PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 899999998854 4578888765
No 271
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.39 E-value=5.7e-05 Score=73.36 Aligned_cols=200 Identities=12% Similarity=0.107 Sum_probs=121.4
Q ss_pred CCEEEEEEC-CCeEEEEEC-CCCeEEEEeeecCCcc--------ceEEEEEECCCCCe----EEEEECCCeEEEEECCCC
Q 013436 136 GSLFVAGFQ-ASQIRIYDV-ERGWKIQKDILAKSLR--------WTVTDTSLSPDQRH----LVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 136 ~~~l~~g~~-d~~i~iwd~-~~~~~~~~~~~~~~~~--------~~v~~i~~s~~~~~----l~~~~~dg~i~iwd~~~~ 201 (443)
+..+++++. ++.|.-+|. .+|+.+-+........ .....++++|.+.. +++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456666766 789999999 8997775543322110 00122455444444 888889999999999999
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe------cCCeEEEEECCCCeeeEEeeccCCCe---
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRILAHTSDV--- 272 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~v--- 272 (443)
+..-.........+.. -...++ .. ++ .+++++ .+|.|+-+|.++++.+.++.......
T Consensus 142 ~~~W~~~~~~~~~~~~-------~~ssP~----v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~ 208 (599)
T 1w6s_A 142 ETVWKVENSDIKVGST-------LTIAPY----VV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL 208 (599)
T ss_dssp CEEEEEECCCGGGTCB-------CCSCCE----EE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred CEEEeecCCCCCccce-------eecCCE----EE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 8764433221100000 000011 11 34 455554 37999999999999887765322110
Q ss_pred -----------------------------------EEEEEeCCCCCEEEEeeCC----------------CeEEEEeccc
Q 013436 273 -----------------------------------NTVCFGDESGHLIYSGSDD----------------NLCKVWDRRC 301 (443)
Q Consensus 273 -----------------------------------~~i~~~~~~~~~l~~~~~d----------------~~i~iwd~~~ 301 (443)
..+++. +...+++.+..+ +.|..+|.+
T Consensus 209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~- 286 (599)
T 1w6s_A 209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD- 286 (599)
T ss_dssp BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT-
T ss_pred cccccccccccccccccccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC-
Confidence 123453 455667766654 378899998
Q ss_pred CCCCCceeeeecCCC----------CCeEEEEEC-CCC---CEEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 302 LNVKGKPAGVLMGHL----------EGITFIDSR-GDG---RYLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 302 ~~~~~~~~~~~~~~~----------~~v~~~~~~-~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
+++.+..++... .++. +... .+| ..++.++.+|.+.++|.++++.+...
T Consensus 287 ---TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 287 ---TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp ---TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ---CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 777776665321 1222 2222 467 46777889999999999998876554
No 272
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.34 E-value=0.00059 Score=60.79 Aligned_cols=181 Identities=9% Similarity=0.042 Sum_probs=106.4
Q ss_pred CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE-EEECCCeEEEEECCCCceeccccceecccCceeeccCC
Q 013436 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (443)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (443)
...|+.++++........ ...+ -..+.+++|.+.+..|. +-...+.|+.+++.+............
T Consensus 12 ~~~I~~i~l~~~~~~~~~-~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l----------- 78 (318)
T 3sov_A 12 RRDLRLVDATNGKENATI-VVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL----------- 78 (318)
T ss_dssp EEEEEEEETTCTTSCCEE-EEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC-----------
T ss_pred cCeEEEEECCCCceEEEE-EecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC-----------
Confidence 467999999875211111 1111 12467899998655555 444567899999876532111000000
Q ss_pred CCceecEEEEEEeCCCCEE-EEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee-CCCeEEEEeccc
Q 013436 224 GGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRC 301 (443)
Q Consensus 224 ~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~ 301 (443)
.....+++.+.+..| ++-...+.|.++++........+.........+++.|..+.++.+-. ..+.|...++.
T Consensus 79 ----~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d- 153 (318)
T 3sov_A 79 ----LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD- 153 (318)
T ss_dssp ----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-
T ss_pred ----CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-
Confidence 034568888755444 44455688999998765433333344456789999744555444432 35788888874
Q ss_pred CCCCCceeeee-cCCCCCeEEEEECCCCCEEE-EEeCCCCEEEEeCCC
Q 013436 302 LNVKGKPAGVL-MGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRK 347 (443)
Q Consensus 302 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~ 347 (443)
+.....+ ...-...+.|+++|++..|. +-+..+.|..+|+..
T Consensus 154 ----G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 154 ----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp ----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ----CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 3332222 22234568999999666555 444567899998864
No 273
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.33 E-value=0.00069 Score=68.65 Aligned_cols=199 Identities=12% Similarity=0.021 Sum_probs=123.6
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEee------ecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
...|.++...++|. |-.|+.++-|..++..++....-.. ...-....|.++...+++. |.+|+.++-|..|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence 45799999999887 5556666778999887653221110 0111234699999888776 55667666688899
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee---ccCCCeEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNT 274 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~ 274 (443)
..++......... ......|.++...+++. |.+|+.++-|..+|..+++.. .+. .....|.+
T Consensus 390 ~~~~~~~~~~~~~-------------~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~ 454 (781)
T 3v9f_A 390 NGKRVAIYNKENR-------------ELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRV 454 (781)
T ss_dssp TTEEEEECC------------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEE
T ss_pred CCCCeEEEccCCC-------------CCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEE
Confidence 8765433221000 01223689998888777 555676667999998877643 332 13457888
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC-----CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+... .++.+ ..|+. +-|..+|.. .++....... ....|.++...++|.+.+.. .++-+..||..+
T Consensus 455 i~~d-~~g~l-wigt~-~Gl~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 455 FYED-KNKKI-WIGTH-AGVFVIDLA----SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDM 524 (781)
T ss_dssp EEEC-TTSEE-EEEET-TEEEEEESS----SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTC
T ss_pred EEEC-CCCCE-EEEEC-CceEEEeCC----CCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCC
Confidence 8874 55654 44555 568888876 3332222111 13678999999988865544 433477888765
No 274
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=0.00034 Score=65.69 Aligned_cols=158 Identities=10% Similarity=0.051 Sum_probs=94.5
Q ss_pred ceEEEEECCC-C-CEEEEEECCCeEEEEECCCCeEEEEeeec-CCccceEEEEEE-------CCCCCeEEEEECCC----
Q 013436 126 RAYVSQFSAD-G-SLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSL-------SPDQRHLVYASMSP---- 191 (443)
Q Consensus 126 ~v~~~~~s~~-~-~~l~~g~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~i~~-------s~~~~~l~~~~~dg---- 191 (443)
....|+|+|. + +++++-...+.|++.|+.++... ..... ...-.....++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 4678999993 4 44444444467999999887433 32222 112235889999 99999777766554
Q ss_pred ---eEEEEECCC-Cceec-c--ccceecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEecCCeEEEEECC------
Q 013436 192 ---IVHIVDVGS-GTMES-L--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE------ 257 (443)
Q Consensus 192 ---~i~iwd~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~------ 257 (443)
.|.+++... +.... . ..+... .....++++|+ +.++++-..++.|+.+|+.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~---------------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~ 283 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY---------------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTI 283 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE---------------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cCceEEEEecCCCCceeecccceeeccC---------------CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccc
Confidence 266665433 22210 0 001000 02346788994 5555566677889999987
Q ss_pred -CCee-----------eEEe-e-ccCCCeEEEEEeCCCCCE-EEEeeCCCeEEEEecc
Q 013436 258 -ANKL-----------SLRI-L-AHTSDVNTVCFGDESGHL-IYSGSDDNLCKVWDRR 300 (443)
Q Consensus 258 -~~~~-----------~~~~-~-~~~~~v~~i~~~~~~~~~-l~~~~~d~~i~iwd~~ 300 (443)
++.. ...+ . ......+.|+|+ ++++. .++-+..+.|+.++..
T Consensus 284 ~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 284 KNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cCceeecccccccccccceeEecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEecC
Confidence 5543 1122 1 223456899997 77875 4444567788887654
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.30 E-value=0.00044 Score=63.60 Aligned_cols=203 Identities=7% Similarity=-0.026 Sum_probs=122.9
Q ss_pred CCceEEEEECCCCCEEE-EEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE-EEECCCeEEEEECCCC
Q 013436 124 TSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSG 201 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~-~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-~~~~dg~i~iwd~~~~ 201 (443)
...+..++|++.+..|+ +-...+.|..+++..+.... .. ..+. .....+++.+.+..|. +-...+.|.+.++...
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~-~~~~-~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VV-STGL-ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-EE-CSSC-SCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-EE-eCCC-CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence 34578999998665555 44457889999988763222 11 1111 2356688887655554 4445678888887654
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-C-CeEEEEECCCCeeeEEeeccCCCeEEEEEeC
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D-DCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (443)
........ .-.....+++.|.+..|+.... . +.|..+++............-...+.|++++
T Consensus 192 ~~~~l~~~----------------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~ 255 (386)
T 3v65_B 192 HRKVLLWQ----------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDY 255 (386)
T ss_dssp SCEEEECS----------------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEG
T ss_pred ceEEeecC----------------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeC
Confidence 32221110 0114678999997766665543 3 6899999865543333333344578999985
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 280 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
..+.+.++-+..+.|..+|+. .......+.........+++. .+.++++....+.|..+|..+++.
T Consensus 256 ~~~~lY~aD~~~~~I~~~d~d----G~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 256 AGRRMYWVDAKHHVIERANLD----GSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp GGTEEEEEETTTTEEEEECTT----SCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCEEEEEECCCCEEEEEeCC----CCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcc
Confidence 566666666677889999985 222222222233456778873 455666666678888888655443
No 276
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.30 E-value=0.00062 Score=60.39 Aligned_cols=198 Identities=12% Similarity=0.067 Sum_probs=111.9
Q ss_pred CCceEEEEECCCCCEEEEEECCC--eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 201 (443)
...+..++++++|+++++..... .|..++..++... ....... ......++..+++..+++-..++.|+.+|..++
T Consensus 71 ~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 71 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 45688999999999766654432 4777787777433 2222211 122345555555554444446889999998764
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEE-ecCCeEEEEECCC-Cee--eEEeeccCCCeEEEEE
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEA-NKL--SLRILAHTSDVNTVCF 277 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~i~~ 277 (443)
.............. ... +.-.....+ +|+++.|+++ ...+.|..+|+.. ++. ...+. .......+++
T Consensus 149 ~~~v~~~~~~~~~~---~~~---~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~v 219 (306)
T 2p4o_A 149 SGSIWLEHPMLARS---NSE---SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAF 219 (306)
T ss_dssp EEEEEEECGGGSCS---STT---CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEE
T ss_pred cEeEEEECCccccc---ccc---CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEE
Confidence 21110000000000 000 000123344 7788766555 4568899999875 321 11221 1234567888
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCce--eeeecCCCCCeEEEEEC---CCCCEEEEEeCCC
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKP--AGVLMGHLEGITFIDSR---GDGRYLISNGKDQ 338 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~~~~~---~~~~~l~s~~~dg 338 (443)
. ++++++++....+.|.++|.. ++. +..+.......++++|. |+++.|+.++..+
T Consensus 220 d-~dG~l~va~~~~~~V~~~~~~-----G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 220 D-VEGNLYGATHIYNSVVRIAPD-----RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp B-TTCCEEEECBTTCCEEEECTT-----CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred C-CCCCEEEEeCCCCeEEEECCC-----CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 6 788887777778899999863 333 22233333568999998 7877776665543
No 277
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.28 E-value=0.00012 Score=71.01 Aligned_cols=198 Identities=13% Similarity=0.119 Sum_probs=117.1
Q ss_pred CCEEEEEEC-CCeEEEEEC-CCCeEEEEeeecCCcc-c------e-EEEEEECCCCCeEEEEECCCeEEEEECCCCceec
Q 013436 136 GSLFVAGFQ-ASQIRIYDV-ERGWKIQKDILAKSLR-W------T-VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (443)
Q Consensus 136 ~~~l~~g~~-d~~i~iwd~-~~~~~~~~~~~~~~~~-~------~-v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (443)
+..+++++. ++.|.-+|. .+|+.+-+........ . . ...++. ++..+++++.|+.|..+|..+++..-
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 455666666 889999999 8997765543222110 0 0 011122 35678888899999999999998764
Q ss_pred cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec------CCeEEEEECCCCeeeEEeeccCCC--------
Q 013436 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSD-------- 271 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-------- 271 (443)
.........+.. -...++ .. ++ .+++++. ++.|+.+|.++++.+.++......
T Consensus 140 ~~~~~~~~~~~~-------~~~~P~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~ 206 (571)
T 2ad6_A 140 EVEVCDPKVGST-------LTQAPF----VA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKD 206 (571)
T ss_dssp EEECCCGGGTCB-------CCSCCE----EE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred EecCCCCCccce-------eccCCE----EE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcc
Confidence 433221100000 000111 11 34 4556554 789999999999988776532110
Q ss_pred ------------------------------eEEEEEeCCCCCEEEEeeCC----------------CeEEEEecccCCCC
Q 013436 272 ------------------------------VNTVCFGDESGHLIYSGSDD----------------NLCKVWDRRCLNVK 305 (443)
Q Consensus 272 ------------------------------v~~i~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~ 305 (443)
-..+++. +....++.+..+ +.|..+|.+ +
T Consensus 207 ~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d-~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~----t 281 (571)
T 2ad6_A 207 FNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD-PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD----T 281 (571)
T ss_dssp TTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT----T
T ss_pred cccccccccccccccccCcccceecCCCCeeeeEEEc-CCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC----C
Confidence 0124554 444456555432 358899988 7
Q ss_pred CceeeeecC--CC--------CCeEEEEECCCCC---EEEEEeCCCCEEEEeCCCCCCcccc
Q 013436 306 GKPAGVLMG--HL--------EGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASC 354 (443)
Q Consensus 306 ~~~~~~~~~--~~--------~~v~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (443)
++.+..+.. |. .++. +....+|+ .++.++.+|.+.++|..+++.+...
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 777766542 21 2221 22234674 5778888999999999998766554
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.27 E-value=0.00081 Score=60.87 Aligned_cols=202 Identities=7% Similarity=-0.027 Sum_probs=121.7
Q ss_pred CceEEEEECCCCCEEEEE-ECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEE-EEECCCeEEEEECCCCc
Q 013436 125 SRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGT 202 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-~~~~dg~i~iwd~~~~~ 202 (443)
..+..++|++.+..|+.. ...+.|..+++..+.... . ...+. .....+++.+.+..|. +-...+.|.+.++....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~-~~~~~-~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-V-VSTGL-ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-E-ECSSC-SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-E-EeCCC-CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc
Confidence 457899999866555544 457889999988753221 1 11111 2356788887655554 44556789999987553
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe-cC-CeEEEEECCCCeeeEEeeccCCCeEEEEEeCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (443)
....... .-.....+++.|.+..|+... .. +.|..+++............-...+.|++.+.
T Consensus 150 ~~~l~~~----------------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~ 213 (349)
T 3v64_C 150 RKVLLWQ----------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA 213 (349)
T ss_dssp CEEEECT----------------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETT
T ss_pred eEEEEeC----------------CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCC
Confidence 2221110 011457899999666555554 34 78999998654322222223445789999855
Q ss_pred CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 281 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
++.+.++-...+.|..+|+. .......+.........+++. ++.++++-...+.|..++..+++.
T Consensus 214 ~~~lY~aD~~~~~I~~~~~d----G~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 214 GRRMYWVDAKHHVIERANLD----GSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp TTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCEEEEEECCCCEEEEEeCC----CCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence 66666665667889999985 222122222233456777773 455566666678888888555443
No 279
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.00068 Score=68.71 Aligned_cols=199 Identities=11% Similarity=0.106 Sum_probs=123.4
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
...|.++...++|.+ ..|+.++-|..|+..++...............|.++...+++. |.+|+.++-|..++..+++.
T Consensus 362 ~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE
Confidence 356999999988874 4556556689999876422111000112335689998887776 55577767788898877755
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeecc-----CCCeEEEEEe
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-----TSDVNTVCFG 278 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~i~~~ 278 (443)
...... . -....|.++...+++. |..|+. +-|..||..+++........ ...|.++...
T Consensus 440 ~~~~~~-~-------------~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 440 QIIELE-K-------------NELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp EECCST-T-------------TCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred EEeccC-C-------------CCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEc
Confidence 433211 0 0122688898888776 555555 45999998877644332222 3578888884
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecC----CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
.++.+.+ |+.++-+..||.. ..+ ...+.. ....|.++...++|.+.++.. +|.|..||..+.
T Consensus 504 -~~g~lWi-gt~~~Gl~~~~~~----~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 504 -SEGRFWI-GTFGGGVGIYTPD----MQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF 569 (781)
T ss_dssp -TTCCEEE-EESSSCEEEECTT----CCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred -CCCCEEE-EEcCCCEEEEeCC----CCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence 6676554 5553447778875 333 222221 235789999998888666544 665488887653
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.22 E-value=0.0028 Score=58.48 Aligned_cols=207 Identities=9% Similarity=-0.061 Sum_probs=123.8
Q ss_pred cCCCCceEEEEECCCCCEEEEE-ECCCeEEEEECCCCe---EEEEeeecCCccceEEEEEECCCCCeEE-EEECCCeEEE
Q 013436 121 DQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGW---KIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHI 195 (443)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~g-~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~i~~s~~~~~l~-~~~~dg~i~i 195 (443)
......+..++|++.+..|+.. ...+.|+.+++.... ..... ....-.....+++.+.+..|. +-...+.|.+
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~--~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~ 185 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 185 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEE--EeCCCCCcccEEEEecCCceEEEECCCCeEEE
Confidence 3345678899999866655554 456789999887521 11111 111223477889987544444 4456778999
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEEeeccCCCeE
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVN 273 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~ 273 (443)
.++........... . -.....|++.|.+..|+.... .+.|...++............-...+
T Consensus 186 ~~~~g~~~~~l~~~-~---------------~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~ 249 (400)
T 3p5b_L 186 ADTKGVKRKTLFRE-N---------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 249 (400)
T ss_dssp ECTTTCSEEEEEEC-S---------------SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred EeCCCCceEEEEeC-C---------------CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceE
Confidence 98876543322210 0 014678999997766666553 36799999875543333333345678
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee-c--CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-M--GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
.|++.+..+.+.++-...+.|..+|+. +.....+ . ........+++. .+.++++-...+.|..+|..+++.
T Consensus 250 glavd~~~~~lY~aD~~~~~I~~~d~d-----G~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 250 GITLDLLSGRLYWVDSKLHSISSIDVN-----GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT-----SCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred EEEEEeCCCEEEEEECCCCEEEEEeCC-----CCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence 999974555555555567789999985 2222222 1 223345577773 345566666678899998766554
Q ss_pred c
Q 013436 351 N 351 (443)
Q Consensus 351 ~ 351 (443)
.
T Consensus 324 ~ 324 (400)
T 3p5b_L 324 V 324 (400)
T ss_dssp C
T ss_pred e
Confidence 3
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.20 E-value=0.0029 Score=56.29 Aligned_cols=207 Identities=10% Similarity=-0.061 Sum_probs=121.4
Q ss_pred CCceEEEEECCCCCEEE-EEECCCeEEEEECCCC---eEEEEeeecCCccceEEEEEECCCCCeEE-EEECCCeEEEEEC
Q 013436 124 TSRAYVSQFSADGSLFV-AGFQASQIRIYDVERG---WKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDV 198 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~-~g~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-~~~~dg~i~iwd~ 198 (443)
...+..++|++++..|+ +-..++.|..+++.+. ....... ... -..+..+++.+.+..|. +-...+.|.++++
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~~~-~~~p~glavd~~~~~ly~~d~~~~~I~~~~~ 106 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-eCC-CCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence 34578999998765555 4445688999998761 1111111 111 12357788887555554 4456789999998
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC--CeEEEEECCCCeeeEEe-eccCCCeEEE
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--DCIYVYDLEANKLSLRI-LAHTSDVNTV 275 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~-~~~~~~v~~i 275 (443)
........... . -.....+++.|.+..|+.+... +.|...++.... ...+ ...-...+.|
T Consensus 107 ~g~~~~~~~~~-~---------------~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gl 169 (316)
T 1ijq_A 107 KGVKRKTLFRE-N---------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGI 169 (316)
T ss_dssp TSSSEEEEEEC-T---------------TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEE
T ss_pred CCCceEEEEEC-C---------------CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEE
Confidence 75433222110 0 0146789999976666665543 689999886443 2333 2334567899
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcc
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (443)
++.+..+.+.++-...+.|..+|+... ..+.+............+++. .+.++++-...+.|..+|..+++...
T Consensus 170 a~d~~~~~lY~~D~~~~~I~~~d~dg~--~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 170 TLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 243 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEeccCCEEEEEECCCCeEEEEecCCC--ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceE
Confidence 997445555555556779999998521 111221111122345677775 45566666667889999876655433
No 282
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.19 E-value=0.00066 Score=59.68 Aligned_cols=213 Identities=14% Similarity=0.132 Sum_probs=125.0
Q ss_pred EEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEeeec----CCccceEEEEEE---CCCCCeEEEEE-----------
Q 013436 128 YVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILA----KSLRWTVTDTSL---SPDQRHLVYAS----------- 188 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~-~d~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~i~~---s~~~~~l~~~~----------- 188 (443)
-+++|++....|..++ ..++|..|+...+......... ......+..|.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4678988666666665 6899999999866333221111 111224689999 68877777544
Q ss_pred --CCCeEEEEECC---CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-CeEEEEECCCCeee
Q 013436 189 --MSPIVHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-DCIYVYDLEANKLS 262 (443)
Q Consensus 189 --~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~ 262 (443)
.+..|..||+. +++......+.....+..... ..-.....+++..++|+..++++.. +.|..++..... +
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~---g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~ 171 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKA---GKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-V 171 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHH---SSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-E
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccc---cccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-E
Confidence 25779999999 676554433321110000000 0011258899999999999999988 988888876543 2
Q ss_pred EEee-c-----cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee-cC---CCCCeEEE-EECCCCCE-
Q 013436 263 LRIL-A-----HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MG---HLEGITFI-DSRGDGRY- 330 (443)
Q Consensus 263 ~~~~-~-----~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~---~~~~v~~~-~~~~~~~~- 330 (443)
..+. . .....+.|+++ ++++.|++...+|.+..+|++.. ....+..- .+ .......| ....+|+.
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~-pdg~~Liv~~~~g~L~~fD~~~p--v~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFD-PHSNKLIAFGGPRALTAFDVSKP--YAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEE-TTTTEEEEESSSSSEEEEECSSS--SCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred eeeeecCCCcccccCcceEEEe-CCCCEEEEEcCCCeEEEEcCCCC--cceeecccccCCcccccCcccccccccCCEEE
Confidence 2221 1 12236799998 77777777666999999998721 11012111 02 11233443 33347777
Q ss_pred EEEEeCCCCEEEEeCCC
Q 013436 331 LISNGKDQAIKLWDIRK 347 (443)
Q Consensus 331 l~s~~~dg~i~iwd~~~ 347 (443)
|++....+.+.+.+-..
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 45555566555555444
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.19 E-value=0.0013 Score=65.98 Aligned_cols=187 Identities=11% Similarity=-0.026 Sum_probs=108.2
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE-ECCCeEEEEECCCCceeccc-cceecccC
Q 013436 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLA-NVTEIHDG 215 (443)
Q Consensus 138 ~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~-~~~~~~~~ 215 (443)
+|+.+ ....|+..++........ ... ...+..|+|.+....|+.+ ...+.|+.+++......... .+.. .
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l---~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--~- 468 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSL---IPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R- 468 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEE---ECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--S-
T ss_pred ccccc-cccceeEeeccCCcceee---ecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--c-
Confidence 44444 335688888876532221 112 2247889999865555544 45678888888753210000 0000 0
Q ss_pred ceeeccCCCCceecEEEEEEeCCCCEEEEE-ecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCC-Ce
Q 013436 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-NL 293 (443)
Q Consensus 216 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~ 293 (443)
.......|++.+.+..|+.+ ...+.|.+.++........+.........|++.|..+.++++-..+ +.
T Consensus 469 ----------~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~ 538 (791)
T 3m0c_C 469 ----------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 538 (791)
T ss_dssp ----------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE
T ss_pred ----------CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCe
Confidence 00135568888877555554 4568899999976554333434455688999975555555554333 67
Q ss_pred EEEEecccCCCCCceeeee-cCCCCCeEEEEECCCCCEEEEE-eCCCCEEEEeCCC
Q 013436 294 CKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (443)
Q Consensus 294 i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 347 (443)
|...++. +.....+ .......+.|++++.+..|..+ ...+.|...++..
T Consensus 539 I~~~~~d-----G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 539 IKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEecC-----CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 8888874 3333333 3334578899999766655544 4456788888865
No 284
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.11 E-value=0.00019 Score=69.76 Aligned_cols=195 Identities=16% Similarity=0.141 Sum_probs=115.4
Q ss_pred EEEECCCCCEEEEEEC--------------------C----CeEEEEECCCCeEEEEeeecCC-------ccceEEEEEE
Q 013436 129 VSQFSADGSLFVAGFQ--------------------A----SQIRIYDVERGWKIQKDILAKS-------LRWTVTDTSL 177 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~~--------------------d----~~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~i~~ 177 (443)
.++++|+..+++.+.. | +.|..+|..+|+.+-....... ...++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4677788888887763 2 5899999999977765433211 112222 222
Q ss_pred C-CCCC---eEEEEECCCeEEEEECCCCceeccccceec---------ccCcee-----e-----------------ccC
Q 013436 178 S-PDQR---HLVYASMSPIVHIVDVGSGTMESLANVTEI---------HDGLDF-----S-----------------AAD 222 (443)
Q Consensus 178 s-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~~-----~-----------------~~~ 222 (443)
. .+|+ .++.++.+|.++++|..+++.+........ ..+..+ . +..
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 2 4664 677889999999999999987644332210 000000 0 000
Q ss_pred CCCceecEEEEEEeCCCCEEEEEe---------------------------------cCCeEEEEECCCCeeeEEeeccC
Q 013436 223 DGGYSFGIFSLKFSTDGRELVAGS---------------------------------SDDCIYVYDLEANKLSLRILAHT 269 (443)
Q Consensus 223 ~~~~~~~i~~l~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~ 269 (443)
.+++. -..++++|+...+++.. .+|.|.-||+.+++.+.+.....
T Consensus 409 ~Gg~~--w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~ 486 (582)
T 1flg_A 409 LGGKN--WNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL 486 (582)
T ss_dssp TCSSC--SSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS
T ss_pred ccccC--CCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC
Confidence 01110 01346666555444432 25789999999999877765332
Q ss_pred CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCe-EEEEECCCCCEEE
Q 013436 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI-TFIDSRGDGRYLI 332 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~ 332 (443)
++..-... ..+.+++.++.|+.++.||.+ +++.+..+......+ .-+.+..+|+.++
T Consensus 487 -~~~~g~~~-tagglvf~g~~dg~l~A~D~~----tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 487 -PLWAGVLA-TAGNLVFTGTGDGYFKAFDAK----SGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp -CCCSCCEE-ETTTEEEEECTTSEEEEEETT----TCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred -CCcccceE-eCCCEEEEECCCCcEEEEECC----CCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 22221111 235678889999999999998 889888876543221 2255556776444
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.06 E-value=0.0019 Score=57.44 Aligned_cols=202 Identities=9% Similarity=-0.017 Sum_probs=121.8
Q ss_pred ceEEEEECCCCCE-EEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeE-EEEECCCeEEEEECCCCce
Q 013436 126 RAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 126 ~v~~~~~s~~~~~-l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~~~~~ 203 (443)
.+..++|++.+.. +.+-...+.|..+++..+....... ..+ -.....+++.+.+..| ++-...+.|.++++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~-~~~-l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-VSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE-EEC-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE-cCC-CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE
Confidence 4678999986544 4455557789999987652111111 111 1135678888755544 4445667899999876433
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 281 (443)
..... . .......+++.|.+..|+.+.. .+.|...++............-...+.|++++.+
T Consensus 114 ~~l~~-~---------------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~ 177 (318)
T 3sov_A 114 KVLFW-Q---------------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEE 177 (318)
T ss_dssp EEEEC-S---------------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTT
T ss_pred EEEEe-C---------------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccC
Confidence 22211 0 0114578999997666666653 5789999986543222222333456899998545
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCceeeee-cCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
+.+.++-+..+.|..+|+. +.....+ .+.......+++. .+.++++-...+.|..++..+++..
T Consensus 178 ~~lY~aD~~~~~I~~~d~d-----G~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 178 QKLYWADAKLNFIHKSNLD-----GTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp TEEEEEETTTTEEEEEETT-----SCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CEEEEEECCCCEEEEEcCC-----CCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCce
Confidence 6555565667899999985 2222222 2234456677775 3445556656788999998766543
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.03 E-value=0.00083 Score=62.67 Aligned_cols=204 Identities=14% Similarity=0.205 Sum_probs=116.0
Q ss_pred cccCCCCceEEEEECCCCCEEEEEECC---C-eEEEEECCCCeEEEEeeecCCccceEEEEEECC-CCCeEEEEECCCeE
Q 013436 119 PVDQTTSRAYVSQFSADGSLFVAGFQA---S-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIV 193 (443)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~g~~d---~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i 193 (443)
.+.........++|+++|+++++-... . .+...+...+........ .-.....++++| ++.++++-..++.|
T Consensus 176 ~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~---~~~~P~giavd~~~G~lyv~d~~~~~V 252 (433)
T 4hw6_A 176 IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC---NARGAKTCAVHPQNGKIYYTRYHHAMI 252 (433)
T ss_dssp EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE---ECSSBCCCEECTTTCCEEECBTTCSEE
T ss_pred EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc---ccCCCCEEEEeCCCCeEEEEECCCCEE
Confidence 333445568999999999954444321 1 233333332211000000 111255688999 56655555567789
Q ss_pred EEEECCCCce-eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEE-ecCCeEEEEECC--CCee--eEEeec
Q 013436 194 HIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLE--ANKL--SLRILA 267 (443)
Q Consensus 194 ~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~--~~~~--~~~~~~ 267 (443)
+.++..++.. ........ ...-..++|+|+++.|+.+ ...+.|+.++.. ++.. ...+.+
T Consensus 253 ~~~d~~~g~~~~~~~~~~~---------------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag 317 (433)
T 4hw6_A 253 SSYDPATGTLTEEEVMMDT---------------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCG 317 (433)
T ss_dssp EEECTTTCCEEEEEEECSC---------------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred EEEECCCCeEEEEEeccCC---------------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEe
Confidence 9999886655 22111100 0012369999999955555 456889998865 2321 112211
Q ss_pred c---------------CCCeEEEEEe--------CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCC---------
Q 013436 268 H---------------TSDVNTVCFG--------DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--------- 315 (443)
Q Consensus 268 ~---------------~~~v~~i~~~--------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------- 315 (443)
. -.....+++. +.+++++++-...+.|+.++. .+... .+.+.
T Consensus 318 ~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-----~G~v~-t~~G~g~~~~~G~~ 391 (433)
T 4hw6_A 318 QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-----EGRVT-TYAGRGNSREWGYV 391 (433)
T ss_dssp CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-----TSEEE-EEECCCTTCSSCCB
T ss_pred cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-----CCCEE-EEEeCCCCCccccC
Confidence 1 1235678882 366777777777788998885 33222 22111
Q ss_pred ---------CCCeEEEEEC-CCCCEEEEEeCCCCEEEEeCC
Q 013436 316 ---------LEGITFIDSR-GDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 316 ---------~~~v~~~~~~-~~~~~l~s~~~dg~i~iwd~~ 346 (443)
-.....|+++ +++.++++-..++.|+.++++
T Consensus 392 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 392 DGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 1236789999 677777776677888888764
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.01 E-value=0.0035 Score=55.60 Aligned_cols=193 Identities=13% Similarity=0.221 Sum_probs=114.5
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCC----CC---eEEEEEC---CCeEEEEECC--CCc
Q 013436 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD----QR---HLVYASM---SPIVHIVDVG--SGT 202 (443)
Q Consensus 135 ~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~----~~---~l~~~~~---dg~i~iwd~~--~~~ 202 (443)
...+++.....+.+.+||+ +|+.++.... +.+..+..-|+ ++ ++++... +++|.+|++. ++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 4466666677788999999 6766665321 23555555442 22 2333344 4799999774 443
Q ss_pred eeccccce-ecccCceeeccCCCCceecEEEEEE--eCC-CC-EEEEEecCCeEEEEECC-------CCeeeEEeeccCC
Q 013436 203 MESLANVT-EIHDGLDFSAADDGGYSFGIFSLKF--STD-GR-ELVAGSSDDCIYVYDLE-------ANKLSLRILAHTS 270 (443)
Q Consensus 203 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~--~~~-~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~ 270 (443)
........ ..... ...+..+++ +|. +. ++++...+|.+..|++. +.+.++++.. .+
T Consensus 113 l~~i~~~~~pv~t~-----------~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gs 180 (355)
T 3amr_A 113 LQSMTDPDHPIATA-----------INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NS 180 (355)
T ss_dssp EEECSCTTSCEECC-----------CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SS
T ss_pred eeeccccccCcCCC-----------CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CC
Confidence 32221110 00000 014555666 674 44 67788888999999882 3355666643 45
Q ss_pred CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCC-CCCceeeeec-CC-CCCeEEEEE--CCCCC-EEEEEe-CCCCEEEE
Q 013436 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-VKGKPAGVLM-GH-LEGITFIDS--RGDGR-YLISNG-KDQAIKLW 343 (443)
Q Consensus 271 ~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~s~~-~dg~i~iw 343 (443)
.+-.+... +....|+.+-.+.-|..++.+... ...+.+..+. ++ ...+..|++ .++++ +|++++ .++++.+|
T Consensus 181 q~EgcvvD-d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy 259 (355)
T 3amr_A 181 QTEGMAAD-DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY 259 (355)
T ss_dssp CEEEEEEE-TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred CcceEEEc-CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence 67777775 667788888888666666644211 1233444432 22 347888887 45555 666666 57799999
Q ss_pred eCC
Q 013436 344 DIR 346 (443)
Q Consensus 344 d~~ 346 (443)
|..
T Consensus 260 dr~ 262 (355)
T 3amr_A 260 DRQ 262 (355)
T ss_dssp ESS
T ss_pred ECC
Confidence 996
No 288
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.00 E-value=0.0029 Score=55.81 Aligned_cols=188 Identities=18% Similarity=0.132 Sum_probs=96.7
Q ss_pred CCCEEEEEE-CC-----CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC-----CeEEEEECCCCc-
Q 013436 135 DGSLFVAGF-QA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT- 202 (443)
Q Consensus 135 ~~~~l~~g~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~~- 202 (443)
++.+++.|+ .+ ..+.+||..++.... .............+. .++..++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 456666666 32 368999998874332 111221111122222 256777777754 368999998877
Q ss_pred --eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEeeccCCC-eEE
Q 013436 203 --MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHTSD-VNT 274 (443)
Q Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-v~~ 274 (443)
.......... ...| ..+.+ ++..++.|+.+ ..+.+||+.+.+-...-...... -.+
T Consensus 91 ~~W~~~~~~p~~----------r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 154 (301)
T 2vpj_A 91 GVWYSVAPMNVR----------RGLA----GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAG 154 (301)
T ss_dssp CCCEEECCCSSC----------CBSC----EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCE
T ss_pred CeeEECCCCCCC----------ccce----eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccce
Confidence 4433221111 0111 11222 67777777654 36899999887543321111111 122
Q ss_pred EEEeCCCCCEEEEeeCC-----CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CCEEEEe
Q 013436 275 VCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWD 344 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd 344 (443)
++. .++++++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+||
T Consensus 155 ~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd 228 (301)
T 2vpj_A 155 LVV--ASGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYN 228 (301)
T ss_dssp EEE--ETTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEE
T ss_pred EEE--ECCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEe
Confidence 223 256677777754 35888888622 11111111111112222333 56677777654 4588888
Q ss_pred CCC
Q 013436 345 IRK 347 (443)
Q Consensus 345 ~~~ 347 (443)
+.+
T Consensus 229 ~~~ 231 (301)
T 2vpj_A 229 IRT 231 (301)
T ss_dssp TTT
T ss_pred CCC
Confidence 876
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.00 E-value=4e-05 Score=76.25 Aligned_cols=178 Identities=10% Similarity=0.032 Sum_probs=100.9
Q ss_pred CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CCCeEEEEECCCC----ceeccccceecccCceee
Q 013436 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEIHDGLDFS 219 (443)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~ 219 (443)
.+.|+..++.+...... .... ..+..++|.+.+..|+.+. ..+.|+.+++.+. ........ .
T Consensus 385 ~~~I~~id~~~~~~~~~---~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~-------- 451 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL---IPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D-------- 451 (699)
T ss_dssp TTC-CEECTTSCCEECC---SCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-C--------
T ss_pred ccceEEEeCCCCcceee---eccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-C--------
Confidence 35788888877543321 1111 2366789998776666554 4578999998751 11111100 0
Q ss_pred ccCCCCceecEEEEEEeCCCCEE-EEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCC-CeEEEE
Q 013436 220 AADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-NLCKVW 297 (443)
Q Consensus 220 ~~~~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~i~iw 297 (443)
......|++.+.+..| ++-...+.|.++++........+.........|++.|..+.++++-... +.|..+
T Consensus 452 -------~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~ 524 (699)
T 1n7d_A 452 -------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 524 (699)
T ss_dssp -------C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred -------CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence 0023457777544444 4444567899999876543333333334567888874455555444333 678777
Q ss_pred ecccCCCCCceeeee-cCCCCCeEEEEECCCCC-EEEEEeCCCCEEEEeCCC
Q 013436 298 DRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 298 d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 347 (443)
++. +.....+ .......+.|+|+|++. ++++-...+.|..+|+..
T Consensus 525 ~~d-----G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 525 GLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CSS-----SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred eCC-----CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 764 2222222 12233457899998754 455555677899998864
No 290
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=0.00036 Score=65.17 Aligned_cols=154 Identities=11% Similarity=0.116 Sum_probs=97.6
Q ss_pred eEEEEEECC-CCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-
Q 013436 171 TVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD- 248 (443)
Q Consensus 171 ~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d- 248 (443)
....++++| ++..|.++...+.|+.+|+.++........ ......++|+++++.|+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-----------------~~~P~~ia~d~~G~~lyvad~~~ 200 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-----------------LSKVRTICWTHEADSMIITNDQN 200 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-----------------CSCEEEEEECTTSSEEEEEECCS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-----------------CCCcceEEEeCCCCEEEEEeCCC
Confidence 356789998 455666666558899999987765433220 0157789999999966666542
Q ss_pred C----eEEEEECCCCeee--EEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec-CCCCCeEE
Q 013436 249 D----CIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITF 321 (443)
Q Consensus 249 g----~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~ 321 (443)
+ .+.+++.. +... ..+. .......+++.|.++.++++-..++.|..++.. ......... +.......
T Consensus 201 ~~~~~~v~~~~~~-g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~----~~~~~~~~~~~~~~~P~g 274 (430)
T 3tc9_A 201 NNDRPNNYILTRE-SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT----TQETTPLFTIQDSGWEFH 274 (430)
T ss_dssp CTTSEEEEEEEGG-GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT----TTEEEEEEECSSSSCCEE
T ss_pred CcccceEEEEeCC-Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC----CCcEEEEEEcCCCCccee
Confidence 1 34445533 2221 2222 234467788874478877777778899999986 333211111 12245678
Q ss_pred EEECCCCCEE-EEEeCCCCEEEEeCCC
Q 013436 322 IDSRGDGRYL-ISNGKDQAIKLWDIRK 347 (443)
Q Consensus 322 ~~~~~~~~~l-~s~~~dg~i~iwd~~~ 347 (443)
++|+|++++| ++-...+.|..++...
T Consensus 275 ia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 275 IQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 9999999954 4555678899987653
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.96 E-value=0.00061 Score=59.91 Aligned_cols=161 Identities=12% Similarity=0.107 Sum_probs=108.0
Q ss_pred EEEEEECCCCCeEEEEE-CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEE---eCCCCEEEEEec
Q 013436 172 VTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF---STDGRELVAGSS 247 (443)
Q Consensus 172 v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~---~~~~~~l~~~~~ 247 (443)
..+++|.+....|..++ ..+.|..|+...+....+ .+.... . .......+..|.| .|+++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s----~----~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS----S----NGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC----C----SSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc----c----cCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 45688988666666666 789999999976654333 221100 0 0011124578999 688777775442
Q ss_pred -------------CCeEEEEECC---CCeeeEEee--cc-----------CCCeEEEEEeCCCCCEEEEeeCC-CeEEEE
Q 013436 248 -------------DDCIYVYDLE---ANKLSLRIL--AH-----------TSDVNTVCFGDESGHLIYSGSDD-NLCKVW 297 (443)
Q Consensus 248 -------------dg~i~iwd~~---~~~~~~~~~--~~-----------~~~v~~i~~~~~~~~~l~~~~~d-~~i~iw 297 (443)
+..|..||+. +++.+.... .. ....+.++.. ++|+..++++.. +.|...
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD-~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD-RDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC-TTSCEEEEEEESSCEEEEE
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC-CCCCEEEeCCCCCCeEEEE
Confidence 5779999999 777665543 11 1247899995 889988888888 887777
Q ss_pred ecccCCCCCceeeeec------CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 298 DRRCLNVKGKPAGVLM------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 298 d~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+.. ++.+..+. ......+.|+++|+|..|++....|.|..+|++.
T Consensus 165 ~pd-----G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 165 SAD-----GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CTT-----SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eCC-----CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 764 33222221 1123467999999999988887799999999884
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.95 E-value=0.0051 Score=61.73 Aligned_cols=207 Identities=9% Similarity=-0.035 Sum_probs=121.3
Q ss_pred CCCCceEEEEECCCCCEEE-EEECCCeEEEEECCCCeE--EEEeeecCCccceEEEEEECCCCCeEEEE-ECCCeEEEEE
Q 013436 122 QTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWK--IQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVD 197 (443)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~-~g~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd 197 (443)
.....+..++|++.+..|+ +-...+.|+.+++..... ..... ....-.....|++.+.+..|+.+ ...+.|.+.+
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v-i~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE-EecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence 3345678999998655444 444567888888875311 01111 11122246678888877555544 4667999999
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEEeeccCCCeEEE
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTV 275 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i 275 (443)
+.......+.. .. -.....|++.|.+..|+.... .+.|.+.++........+...-...+.|
T Consensus 500 ldG~~~~~l~~-~~---------------l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GL 563 (791)
T 3m0c_C 500 TKGVKRKTLFR-EN---------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 563 (791)
T ss_dssp TTSSSEEEEEE-CT---------------TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred CCCCeEEEEEe-CC---------------CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEE
Confidence 87654322211 00 014678999997666666653 2689999987655433333344578899
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeee-cC--CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCc
Q 013436 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MG--HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (443)
++.+..+.+.++-...+.|...++. +.....+ .. .......|++.. +.++++-...+.|...|..+++..
T Consensus 564 avD~~~~~LYwaD~~~~~I~~~d~d-----G~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 564 TLDLLSGRLYWVDSKLHSISSIDVN-----GGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEecCCCeEEEEeCCCCcEEEEecC-----CCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce
Confidence 9975555555555566789999885 2222222 21 223445666643 344555556677888886665443
No 293
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.95 E-value=0.0034 Score=56.80 Aligned_cols=208 Identities=14% Similarity=0.047 Sum_probs=105.2
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeee---cCCccceEEEEEECCC---CCeEEEEEC-C-----CeE
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPD---QRHLVYASM-S-----PIV 193 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~i~~s~~---~~~l~~~~~-d-----g~i 193 (443)
....++|.|+|+++++ ..+|.|.+++ ++.. ..... ..........|+|+|+ +..|.++.. . +.|
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4679999999995555 5679999998 4432 11111 1112335889999998 555554433 2 578
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-------------CCeEEEEECCCC-
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLEAN- 259 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-------------dg~i~iwd~~~~- 259 (443)
..++...+.......+.. . +.......|. ...++|.|||.++++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~---~--~p~~~~~~h~--~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLD---G--IPARPHGLHS--GGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp EEEEECSSCEEEEEEEEE---E--ECCCTTCCCC--CCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred EEEEeCCCCcCceEEEEE---e--CCCCCCCCcC--CceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 888876542211111000 0 0000011232 357999999976665432 256777776531
Q ss_pred -----------eeeEEee-ccCCCeEEEEEeCCCCCEEEEeeCCCe--------EEEEecccC-C---------C--CCc
Q 013436 260 -----------KLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNL--------CKVWDRRCL-N---------V--KGK 307 (443)
Q Consensus 260 -----------~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~--------i~iwd~~~~-~---------~--~~~ 307 (443)
.....+. ++ .....++|.|.++.++++-..... |.+...-.. . . ...
T Consensus 181 p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp CTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred CCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence 0111111 22 235678897546776665433332 333321100 0 0 012
Q ss_pred eeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 308 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
++..+. +......++| .+|.++++.-..+.|...++..
T Consensus 260 p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~ 297 (352)
T 2ism_A 260 PLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEG 297 (352)
T ss_dssp CSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEE
T ss_pred CeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECC
Confidence 233332 2334566777 3566666555566666666543
No 294
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.92 E-value=0.0021 Score=56.70 Aligned_cols=187 Identities=16% Similarity=0.128 Sum_probs=95.5
Q ss_pred CCCEEEEEECC----CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC-----CeEEEEECCCCceec
Q 013436 135 DGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMES 205 (443)
Q Consensus 135 ~~~~l~~g~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 205 (443)
++.+++.|+.+ ..+.+||+.+..... ..........-..+.+ ++..++.|+.+ ..+.+||..+.+...
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 34556666643 358899998874322 2112211111222222 66677777754 368899998877654
Q ss_pred cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC-----eEEEEECCCCeeeEE--eeccCCCeEEEEEe
Q 013436 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLR--ILAHTSDVNTVCFG 278 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~ 278 (443)
........ .+| ..+.+ ++..++.|+.++ .+.+||+.+.+-... +...... .+++.
T Consensus 92 ~~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~- 153 (302)
T 2xn4_A 92 VANMRDRR----------STL----GAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGV- 153 (302)
T ss_dssp ECCCSSCC----------BSC----EEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEE-
T ss_pred CCCCCccc----------cce----EEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEE-
Confidence 43322111 111 11222 577777777553 588999988764332 1111111 22233
Q ss_pred CCCCCEEEEeeCC-------CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CCEEEEeCC
Q 013436 279 DESGHLIYSGSDD-------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIR 346 (443)
Q Consensus 279 ~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~ 346 (443)
.++++++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+||+.
T Consensus 154 -~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 228 (302)
T 2xn4_A 154 -VGGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPT 228 (302)
T ss_dssp -ETTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETT
T ss_pred -ECCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCC
Confidence 245677776643 35788888622 11112112111112222333 56777777654 357888877
Q ss_pred C
Q 013436 347 K 347 (443)
Q Consensus 347 ~ 347 (443)
+
T Consensus 229 ~ 229 (302)
T 2xn4_A 229 T 229 (302)
T ss_dssp T
T ss_pred C
Confidence 6
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.82 E-value=0.03 Score=54.84 Aligned_cols=186 Identities=9% Similarity=0.053 Sum_probs=114.2
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE-ECCCeEEEEECCCCceeccccceecccCc
Q 013436 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (443)
Q Consensus 138 ~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 216 (443)
+|+.+ ..+.|+..++++..... .....+. ..+..++|++.+..|..+ ..++.|+.+++.......+....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~~~-~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g------ 78 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLTGV-KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG------ 78 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCCSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcCCC-CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC------
Confidence 44444 45789999998653221 1222222 347899999976666554 45688999998765433222110
Q ss_pred eeeccCCCCceecEEEEEEeCCCCEEEEE-ecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEe-eCCCeE
Q 013436 217 DFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLC 294 (443)
Q Consensus 217 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~-~~d~~i 294 (443)
......+++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|..+.++.+- +..+.|
T Consensus 79 ----------~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I 148 (628)
T 4a0p_A 79 ----------LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKI 148 (628)
T ss_dssp ----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred ----------CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEE
Confidence 0134568888766555554 4568899999876543222324445678999975566555543 235677
Q ss_pred EEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEE-eCCCCEEEEeCCC
Q 013436 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (443)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 347 (443)
...++. +.....+.......+.|++++++..|..+ ...+.|...|+..
T Consensus 149 ~r~~~d-----G~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 149 DRAAMD-----GSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EEEETT-----SCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeCC-----CCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 777774 33333333345577899999976665544 4567889988865
No 296
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.80 E-value=0.0048 Score=54.49 Aligned_cols=187 Identities=11% Similarity=0.062 Sum_probs=96.1
Q ss_pred CCEEEEEEC--CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC----CeEEEEECCCCceeccccc
Q 013436 136 GSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGSGTMESLANV 209 (443)
Q Consensus 136 ~~~l~~g~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~ 209 (443)
+.+++.|+. ...+.+||..++.-.. .............+.+ ++..++.|+.+ ..+.+||+.+++.......
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 345556654 3568999998874332 2122222222222332 56677777754 5788999988876544322
Q ss_pred eecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC------CeEEEEECCCCeeeEEeeccCC-CeEEEEEeCCCC
Q 013436 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESG 282 (443)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~ 282 (443)
.... .+| ..+.+ +++.++.|+.+ ..+.+||+.+.+-...-..... .-.+++. .++
T Consensus 89 p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~ 150 (306)
T 3ii7_A 89 PTPR----------DSL----AACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANG 150 (306)
T ss_dssp SSCC----------BSC----EEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETT
T ss_pred Cccc----------cce----eEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECC
Confidence 1110 111 11222 67777777755 4599999988764332111111 1112222 245
Q ss_pred CEEEEeeC---------CCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CCEEEEeCCC
Q 013436 283 HLIYSGSD---------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRK 347 (443)
Q Consensus 283 ~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 347 (443)
++++.|+. -..+.+||+... ....+..+......-..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred EEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 66667663 345888888622 11122111111111222223 56677777653 3578888876
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.75 E-value=0.0074 Score=53.55 Aligned_cols=145 Identities=12% Similarity=0.183 Sum_probs=90.0
Q ss_pred CCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC----CCCE--EEEEe-c---CCe
Q 013436 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRE--LVAGS-S---DDC 250 (443)
Q Consensus 181 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~----~~~~--l~~~~-~---dg~ 250 (443)
..+++.....+-+.+||+ +++........ .+..+..-| .|+. ++.++ . +++
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g------------------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~ 100 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNTG------------------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNT 100 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECCS------------------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccCC------------------CcccEEEecccccCCceEeEEEEeCCCCCCCe
Confidence 456666677789999999 55554433211 334444433 2322 33333 3 478
Q ss_pred EEEEECC--CCeeeEEeec------cC-CCeEEEEE--eCCCCC-EEEEeeCCCeEEEEecccC---CCCCceeeeecCC
Q 013436 251 IYVYDLE--ANKLSLRILA------HT-SDVNTVCF--GDESGH-LIYSGSDDNLCKVWDRRCL---NVKGKPAGVLMGH 315 (443)
Q Consensus 251 i~iwd~~--~~~~~~~~~~------~~-~~v~~i~~--~~~~~~-~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~ 315 (443)
|.+|++. +++ +..+.. .. ..+..+|+ ++..+. ++++...+|.+..|++... ....+.++.+..
T Consensus 101 l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l- 178 (355)
T 3amr_A 101 IEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM- 178 (355)
T ss_dssp EEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-
T ss_pred EEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-
Confidence 9999763 333 444411 11 55677777 544554 6778888999999998531 124466667664
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEeCC
Q 013436 316 LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 316 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (443)
.+.+-.+...+....|..+-.+.-|..++.+
T Consensus 179 gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 179 NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 3578889999988899999888655555544
No 298
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.75 E-value=0.022 Score=51.38 Aligned_cols=211 Identities=11% Similarity=0.027 Sum_probs=108.2
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCe-EEEEeeecCCccceEEEEEECCC---CCeEEEEEC----C----Ce
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPD---QRHLVYASM----S----PI 192 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~i~~s~~---~~~l~~~~~----d----g~ 192 (443)
.....++|.|+|+++++ ..+|.|++++ .++. .+...............|+++|+ +..|.++.. + ..
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 34688999999985555 5669999997 3453 11111011112235889999998 445544432 3 56
Q ss_pred EEEEECCCCc--eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-------------CCeEEEEECC
Q 013436 193 VHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLE 257 (443)
Q Consensus 193 i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-------------dg~i~iwd~~ 257 (443)
|..|+..... ......+.. . +. ....| ....|+|.|||.++++.+. .|.|.-++..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~---~--~~--~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d 177 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLID---G--IP--GAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE 177 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEE---E--EE--CCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred EEEEEECCCCcCcCccEEEEE---c--CC--CCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence 7777776541 110000000 0 00 11122 2356899999986666432 2567777654
Q ss_pred CCe-------eeEEe-eccCCCeEEEEEeCCCCCEEEEeeCCC---eEEEEecccC--------C--C--CCceeeeecC
Q 013436 258 ANK-------LSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCL--------N--V--KGKPAGVLMG 314 (443)
Q Consensus 258 ~~~-------~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~iwd~~~~--------~--~--~~~~~~~~~~ 314 (443)
..- ....+ .++ .....++|.|.++.++++-.... .|.+...-.. . . ...++..+..
T Consensus 178 G~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 178 GRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp SCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 320 01111 133 23568999744677665543222 2333321100 0 0 0122333312
Q ss_pred CCCCeEEEEEC-------CCCCEEEEEeCCCCEEEEeCCC
Q 013436 315 HLEGITFIDSR-------GDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 315 ~~~~v~~~~~~-------~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.......++|. .+|.++++.-..+.|...++..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 23467778883 4566666665667777777654
No 299
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.74 E-value=0.0086 Score=52.96 Aligned_cols=188 Identities=13% Similarity=0.089 Sum_probs=96.9
Q ss_pred CCCCEEEEEECC----CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC----C-----CeEEEEECCC
Q 013436 134 ADGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----S-----PIVHIVDVGS 200 (443)
Q Consensus 134 ~~~~~l~~g~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~----d-----g~i~iwd~~~ 200 (443)
-++.+++.|+.+ ..+.+||..++.-... ............+.+ ++.+++.|+. + ..+.+||+.+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 356677777642 3589999988743322 111111111222222 5667777765 2 3688999988
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEE--eeccCCCeE
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLR--ILAHTSDVN 273 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~ 273 (443)
.+........... ..| ..+.+ +++.++.|+.+ ..+.+||+.+.+-... +...... .
T Consensus 100 ~~W~~~~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~ 162 (308)
T 1zgk_A 100 NQWSPCAPMSVPR----------NRI----GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-V 162 (308)
T ss_dssp TEEEECCCCSSCC----------BTC----EEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-C
T ss_pred CeEeECCCCCcCc----------ccc----EEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-e
Confidence 8765443222111 111 12222 67777777643 3588999988753322 1111111 1
Q ss_pred EEEEeCCCCCEEEEeeCC-----CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CCEEEE
Q 013436 274 TVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLW 343 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iw 343 (443)
+++. .++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+|
T Consensus 163 ~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 163 GVAV--LNRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp EEEE--ETTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred EEEE--ECCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence 2223 256677777754 45888888622 11111111111112223333 56677777654 458888
Q ss_pred eCCC
Q 013436 344 DIRK 347 (443)
Q Consensus 344 d~~~ 347 (443)
|+.+
T Consensus 237 d~~~ 240 (308)
T 1zgk_A 237 DVET 240 (308)
T ss_dssp ETTT
T ss_pred eCCC
Confidence 8876
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.72 E-value=0.023 Score=50.66 Aligned_cols=188 Identities=12% Similarity=0.027 Sum_probs=99.5
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
...+..+.|++ +..+++ +..+.|.. ..+.|+..........+...+..+.+.+++..++++ .++.|.. ....++.
T Consensus 79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 44689999986 444444 45564443 344443333322221223346778777766655544 4554422 2222322
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEEC--CCCeeeEEeeccCCCeEEEEEeCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL--EANKLSLRILAHTSDVNTVCFGDES 281 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~i~~~~~~ 281 (443)
-.... . +....+..+.+.|++.+++++...+..+-.|- .+-+.+. ......+..+.+. ++
T Consensus 154 W~~~~--~-------------~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~-~~ 215 (327)
T 2xbg_A 154 WQALV--Q-------------EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFT-PD 215 (327)
T ss_dssp EEEEE--C-------------SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEEC-TT
T ss_pred CEEee--c-------------CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEEC-CC
Confidence 11111 0 11226788999999887776654443333442 2223221 2345678888886 56
Q ss_pred CCEEEEeeCCCeEEEEecccCCCCCceeeeec----CCCCCeEEEEECCCCCEEEEEeCCCCE
Q 013436 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM----GHLEGITFIDSRGDGRYLISNGKDQAI 340 (443)
Q Consensus 282 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~dg~i 340 (443)
+.++ .++.+|.+.+.+.. .++.-..+. .....+..+++.+++..++++. ++.|
T Consensus 216 g~~~-~~~~~G~~~~s~~D----~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 216 GRLW-MIVNGGKIAFSDPD----NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp SCEE-EEETTTEEEEEETT----EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred CCEE-EEeCCceEEEecCC----CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence 6655 45567887776421 122111111 1224588999998887766654 6666
No 301
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.71 E-value=0.0082 Score=53.26 Aligned_cols=183 Identities=13% Similarity=0.068 Sum_probs=93.5
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC----C-------CeEEEEECCCCceecc
Q 013436 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----S-------PIVHIVDVGSGTMESL 206 (443)
Q Consensus 138 ~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~ 206 (443)
+++.|+ ..+.+||..++.-... ................++..++.|+. + ..+.+||..+++....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCA--SLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEE--ECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEecC--CCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344554 5799999998754321 12111111122223357788888874 1 1378899988876544
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC--------CeEEEEECCCCeeeEE--eeccCCCeEEEE
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLR--ILAHTSDVNTVC 276 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~--~~~~~~~v~~i~ 276 (443)
....... .+| ..+.+ ++..++.|+.+ ..+.+||+.+.+-... +...... .+++
T Consensus 83 ~~~p~~r----------~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~ 145 (315)
T 4asc_A 83 PPLPSPR----------CLF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL 145 (315)
T ss_dssp CCBSSCE----------ESC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE
T ss_pred CCCCcch----------hce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE
Confidence 3322111 011 11222 56777777632 4589999988753221 1111111 1222
Q ss_pred EeCCCCCEEEEeeC-C-----CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC-----CEEEEeC
Q 013436 277 FGDESGHLIYSGSD-D-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDI 345 (443)
Q Consensus 277 ~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~iwd~ 345 (443)
. .++++++.|+. + ..+.+||.... ....+..+.........+.+ ++++++.|+.++ .+.+||+
T Consensus 146 ~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 146 S--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp E--ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEET
T ss_pred E--ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEEC
Confidence 2 34567777776 2 36888888622 11112112111111222333 567777777654 4778887
Q ss_pred CC
Q 013436 346 RK 347 (443)
Q Consensus 346 ~~ 347 (443)
.+
T Consensus 220 ~~ 221 (315)
T 4asc_A 220 TD 221 (315)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.64 E-value=0.012 Score=52.79 Aligned_cols=200 Identities=11% Similarity=0.083 Sum_probs=112.0
Q ss_pred ceEEEEECCCCCEEEEEE------------CCCeEEEEECCCC-eEEEEeeecC----CccceEEEEEECC--CCC-eEE
Q 013436 126 RAYVSQFSADGSLFVAGF------------QASQIRIYDVERG-WKIQKDILAK----SLRWTVTDTSLSP--DQR-HLV 185 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~------------~d~~i~iwd~~~~-~~~~~~~~~~----~~~~~v~~i~~s~--~~~-~l~ 185 (443)
..-.++..|+|..+++++ .+|.|.++|..+. .......... ........+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 344556788876555541 6899999998732 1122222111 1233566777755 343 344
Q ss_pred EE-EC--CCeEEEEECCCCc--eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe--------------
Q 013436 186 YA-SM--SPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------------- 246 (443)
Q Consensus 186 ~~-~~--dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-------------- 246 (443)
++ .. +..|.+|++.... ......... ..-...+++.+.++|.+.++..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-------------~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~ 197 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-------------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH 197 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECC-------------TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHH
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEecccc-------------CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhh
Confidence 43 23 4577887776532 211111111 0112578899999998766653
Q ss_pred ---cCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEe-eCCCeEEEEecccCCCCCceeeeecCCCCCeEEE
Q 013436 247 ---SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (443)
Q Consensus 247 ---~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 322 (443)
..|.|+.+|.. + +..+...-...+.++|+ ++++.++.+ +..+.|..|++.... .......+ ........+
T Consensus 198 ~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia~s-pDg~~lYvadt~~~~I~~~~~~~~g-~l~~~~~~-~~~g~PDGi 271 (355)
T 3sre_A 198 LGLAWSFVTYYSPN--D-VRVVAEGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHANW-TLTPLRVL-SFDTLVDNI 271 (355)
T ss_dssp TTCCCEEEEEECTT--C-CEEEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTS-CEEEEEEE-ECSSEEEEE
T ss_pred ccCCccEEEEEECC--e-EEEeecCCcccCcceEC-CCCCEEEEEeCCCCeEEEEEECCCC-cEecCEEE-eCCCCCceE
Confidence 13567777653 3 23333334567999998 777666555 467899999986211 11122233 224556788
Q ss_pred EECC-CCCEEEEEeCC-CCEEEEe
Q 013436 323 DSRG-DGRYLISNGKD-QAIKLWD 344 (443)
Q Consensus 323 ~~~~-~~~~l~s~~~d-g~i~iwd 344 (443)
++.+ +|++.+++..+ +.|..|+
T Consensus 272 ~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 272 SVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EECTTTCCEEEEEESCHHHHHSCC
T ss_pred EEeCCCCcEEEEecCCceEEEEEC
Confidence 9998 59887766544 3444443
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.59 E-value=0.022 Score=55.66 Aligned_cols=181 Identities=10% Similarity=0.084 Sum_probs=103.2
Q ss_pred CCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE-CCCeEEEEECCCCce-eccccceecccCceeecc
Q 013436 144 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAA 221 (443)
Q Consensus 144 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 221 (443)
....|+..++........ ...... ..+..++|++.+..|..+. ..+.|..+++..... ..+... .
T Consensus 16 ~~~~I~~i~~~~~~~~~~-~~~~~~-~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-~---------- 82 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT-IVVGGL-EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-G---------- 82 (619)
T ss_dssp CSSBEEEECCC----------CBCC-SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-S----------
T ss_pred ccccEEEEeCCCCcceEE-EEEcCC-CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-C----------
Confidence 346788888876421111 112222 2378899999777666555 457888888875421 111100 0
Q ss_pred CCCCceecEEEEEEeCCCCEEEEE-ecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEEEEee-CCCeEEEEec
Q 013436 222 DDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDR 299 (443)
Q Consensus 222 ~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~ 299 (443)
-.....+++.+.+..|+.+ ...+.|.+.++........+.........|++.|..+.++++-- ..+.|...++
T Consensus 83 -----~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~ 157 (619)
T 3s94_A 83 -----LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM 157 (619)
T ss_dssp -----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred -----CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEEC
Confidence 0146789999866555554 45789999998765433333244456788999755565555532 2456766666
Q ss_pred ccCCCCCceeeeec-CCCCCeEEEEECCCCCEEE-EEeCCCCEEEEeCCC
Q 013436 300 RCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRK 347 (443)
Q Consensus 300 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~ 347 (443)
. +.....+. ......+.|++++++..|. +-...+.|...|+..
T Consensus 158 d-----G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 158 D-----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp T-----SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred C-----CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 4 33332222 2345678999998765555 444567788888765
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.52 E-value=0.00058 Score=67.91 Aligned_cols=204 Identities=10% Similarity=-0.064 Sum_probs=115.9
Q ss_pred CceEEEEECCCCCEEEEEE-CCCeEEEEECCCC---eEEEEeeecCCccceEEEEEECCCCCeE-EEEECCCeEEEEECC
Q 013436 125 SRAYVSQFSADGSLFVAGF-QASQIRIYDVERG---WKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVG 199 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~ 199 (443)
..+..++|++.+..|+.+. ..+.|+.+++.+. ..... .....-.....|++.+.+..| ++-...+.|.++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence 4567889998776666553 4578999998751 11111 111111224568888654444 444456789999987
Q ss_pred CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEEeeccCCCeEEEEE
Q 013436 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (443)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 277 (443)
......+.... . .....+++.|.+..|+.+.. .+.|.++++........+...-...+.|++
T Consensus 484 g~~~~~l~~~~-~---------------~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlav 547 (699)
T 1n7d_A 484 GVKRKTLFREQ-G---------------SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL 547 (699)
T ss_dssp SCCEEEECCCS-S---------------CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEE
T ss_pred CCceEEEEeCC-C---------------CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEE
Confidence 65433222110 0 02346788886665555443 267888887544322222222345678999
Q ss_pred eCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec---CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCcc
Q 013436 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (443)
Q Consensus 278 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (443)
.+..+.++++-+..+.|..+|+. +.....+. ........|++..+ .++++....+.|..+|..+++...
T Consensus 548 d~~~~~LY~aD~~~~~I~~~d~d-----G~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 548 DLLSGRLYWVDSKLHSISSIDVN-----GGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CTTTCCEEEEETTTTEEEEECSS-----SSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred eccCCEEEEEecCCCeEEEEccC-----CCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 75566666666677899999985 22222221 11122344555443 455566667889999976654433
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.50 E-value=0.054 Score=49.28 Aligned_cols=230 Identities=11% Similarity=0.178 Sum_probs=133.8
Q ss_pred CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCC
Q 013436 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (443)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (443)
+..|.|.|+.++..+.+. ... -.+.-.+|..+.+|.-. ...++|+|+++..........+
T Consensus 47 ~~~vvIiDl~~~~~~~rr--pi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e------------- 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRR--PIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (494)
T ss_dssp CCEEEEEETTSTTSCEEE--ECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCeEEEEECCCCCcceec--ccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-------------
Confidence 347899999886433221 111 12245788888887765 6799999999987766555433
Q ss_pred CceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEeeccC----CCeEEEEEeCCCCCEEEEee-------CCC
Q 013436 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHT----SDVNTVCFGDESGHLIYSGS-------DDN 292 (443)
Q Consensus 225 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~----~~v~~i~~~~~~~~~l~~~~-------~d~ 292 (443)
+|.-=.|-. .+.|+..+ +..|+-|++... .+++.+..|. ..|..-..+ ++.++++..+ -.|
T Consensus 107 ----~VvfWkWis-~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G 179 (494)
T 1bpo_A 107 ----DVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVG 179 (494)
T ss_dssp ----CCCEEEEEE-TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEEC-TTSSEEEEEEEEEETTEEEE
T ss_pred ----CceEEEecC-CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEEC-CCCCeEEEEeecccCCcccc
Confidence 344445553 34455554 557999999753 4555555443 345555554 7777776544 246
Q ss_pred eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCC---CEEEEEeCC---CCEEEEeCCCCCCccccCCcccccCcccc
Q 013436 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---RYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYR 366 (443)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (443)
.+.+|... .+.-+.+.||......+.+..+. ..++.+... +.++|-++...... .........
T Consensus 180 ~mQLYS~e-----r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~------~~~f~kk~v 248 (494)
T 1bpo_A 180 AMQLYSVD-----RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG------NQPFPKKAV 248 (494)
T ss_dssp EEEEEEST-----TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTT------CCCCCCEEE
T ss_pred eEEEeecc-----ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccC------CCCccceee
Confidence 88999984 56667788887666555554321 244444432 68888888653100 011111111
Q ss_pred cccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
.+.++|+.. .+-++ .+. .|+.-..++.-+.-|.|++||+.||.+++
T Consensus 249 dv~fppe~~-----~DFPv-------------amq----vs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 249 DVFFPPEAQ-----NDFPV-------------AMQ----ISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp ECCCCTTST-----TCCEE-------------EEE----EETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred eeeCCcccc-----cCcee-------------EEE----ecccCCEEEEEecCceEEEEecccceeee
Confidence 222222210 11111 111 23345678888888999999999988775
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.49 E-value=0.022 Score=55.67 Aligned_cols=202 Identities=10% Similarity=-0.007 Sum_probs=117.2
Q ss_pred CceEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE-ECCCeEEEEECCCCc
Q 013436 125 SRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGT 202 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~~ 202 (443)
..+..++|++.+..|+.+. ..+.|..++++........ ...+ -.....+++.+.+..|+.+ ...+.|.+.++....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v-~~~~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-VVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE-ECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE-EeCC-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence 4578999999776666554 4678888988764211111 1222 1348889999866655554 456899999987654
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEEeeccCCCeEEEEEeCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (443)
...+.. .. -.....|++.|.+..|+.... .+.|...++............-...+.|++.+.
T Consensus 118 ~~~l~~-~~---------------l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~ 181 (619)
T 3s94_A 118 RKVLFW-QE---------------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE 181 (619)
T ss_dssp CEEEEC-SS---------------CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETT
T ss_pred EEEEEe-CC---------------CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEcc
Confidence 322211 00 013457899997666666553 467888887654333333334456789999755
Q ss_pred CCCEEEEeeCCCeEEEEecccCCCCCceeeee-cCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCC
Q 013436 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (443)
Q Consensus 281 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (443)
.+++.++-...+.|...|+. +.....+ .+.......|++..+ ..+++-...+.|...|..+++.
T Consensus 182 ~~~LY~aD~~~~~I~~~~~d-----G~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 182 EQKLYWADAKLNFIHKSNLD-----GTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp TTEEEEEETTTCCEEEESSS-----CCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCEEEEEeCCCCeEEEecCC-----CCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 56555555667789988885 2222222 111222345666655 4445555677888888876543
No 307
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.47 E-value=0.043 Score=48.62 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=91.1
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEEC----CC-------eEEEEECCCCceecc
Q 013436 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----SP-------IVHIVDVGSGTMESL 206 (443)
Q Consensus 138 ~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~ 206 (443)
+++.|+. .+.+||..+++............. -.+ ....++..++.|+. ++ .+.+||..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~-~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRN-HSS-IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSS-EEE-EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCcc-ceE-EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 4444443 488999988754332111111111 122 23457778888873 12 277889888776544
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-------CeEEEEECCCCeeeEEeeccCCCe--EEEEE
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------DCIYVYDLEANKLSLRILAHTSDV--NTVCF 277 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~v--~~i~~ 277 (443)
....... .+| ..+.+ ++..++.|+.+ ..+.+||+.+.+-...- ....+. .+++.
T Consensus 94 ~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~ 156 (318)
T 2woz_A 94 PPLPSAR----------CLF----GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYGHNVIS 156 (318)
T ss_dssp SCBSSCB----------CSC----EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEESCEEEE
T ss_pred CCCCccc----------ccc----ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccccEEEE
Confidence 3222111 112 11222 57777777754 35889999887543221 111111 12222
Q ss_pred eCCCCCEEEEeeC------CCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CCEEEEeCC
Q 013436 278 GDESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIR 346 (443)
Q Consensus 278 ~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~ 346 (443)
.++.+++.|+. -..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+||+.
T Consensus 157 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 157 --HNGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp --ETTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETT
T ss_pred --ECCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECC
Confidence 35667777764 235888998622 11122111111111222333 56777777654 246678876
Q ss_pred C
Q 013436 347 K 347 (443)
Q Consensus 347 ~ 347 (443)
+
T Consensus 231 ~ 231 (318)
T 2woz_A 231 T 231 (318)
T ss_dssp T
T ss_pred C
Confidence 6
No 308
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.46 E-value=0.054 Score=48.24 Aligned_cols=194 Identities=12% Similarity=0.104 Sum_probs=102.9
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeee-cCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL-AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
..+.++.|.+++..+++| ..|.| +...+.|+.-..... .......+.+|.|.+ +. +++++..+.|.. ....++.
T Consensus 36 ~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTSS
T ss_pred CcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCCC
Confidence 468999999888888755 56755 334444432222211 112244688999976 44 444455664433 3333332
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE-eeccCCCeEEEEEeCCCC
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDESG 282 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~ 282 (443)
-....... .+...+..+.+.+++..++++ .+|.|+.- ...++.-.. .......+..+.+. +++
T Consensus 111 W~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~-~~~ 174 (327)
T 2xbg_A 111 WSQIPLDP-------------KLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRS-PSG 174 (327)
T ss_dssp CEECCCCT-------------TCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEEC-TTS
T ss_pred ceECcccc-------------CCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEc-CCC
Confidence 11111100 011145677777777666555 45644332 222322222 22445678899997 567
Q ss_pred CEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEe
Q 013436 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 283 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 344 (443)
.+++++...+..+-.|-. ....+.+. ......+..+.+.++++.+++ +.+|.+++.+
T Consensus 175 ~~~~~g~~G~~~~S~d~g--G~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~ 231 (327)
T 2xbg_A 175 EYVAVSSRGSFYSTWEPG--QTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSD 231 (327)
T ss_dssp CEEEEETTSSEEEEECTT--CSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred cEEEEECCCcEEEEeCCC--CCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEec
Confidence 777666444434444421 01223332 234567889999999876654 4577777764
No 309
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.42 E-value=0.012 Score=53.31 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=39.5
Q ss_pred CCCEEEEEECC-CeEEEEECCC--CeEEEEeeecC-CccceEEEEEECCCCCeEEEEEC-C---------CeEEEEECCC
Q 013436 135 DGSLFVAGFQA-SQIRIYDVER--GWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASM-S---------PIVHIVDVGS 200 (443)
Q Consensus 135 ~~~~l~~g~~d-~~i~iwd~~~--~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~~~~~-d---------g~i~iwd~~~ 200 (443)
++++++.|+.+ ..+.+||..+ .. ........ ..+.....+.+ ++++++.|+. + ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~-W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKK-WTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCC-EEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCC-eeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 66777777643 4688999863 21 22221122 11112222333 5667777765 2 4688999988
Q ss_pred Cceecccc
Q 013436 201 GTMESLAN 208 (443)
Q Consensus 201 ~~~~~~~~ 208 (443)
.+......
T Consensus 96 ~~W~~~~~ 103 (357)
T 2uvk_A 96 NSWVKLMS 103 (357)
T ss_dssp TEEEECSC
T ss_pred CcEEECCC
Confidence 87655443
No 310
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=0.014 Score=54.88 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=98.8
Q ss_pred EEEEEECCC-CCeEEEE-ECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEE-------eCCCCEE
Q 013436 172 VTDTSLSPD-QRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-------STDGREL 242 (443)
Q Consensus 172 v~~i~~s~~-~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-------~~~~~~l 242 (443)
...|+|.|. ...|.++ ...+.|++.|+.++....+..... ........++| ++++..|
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-------------~~~~~p~~ia~~~~~~~~d~~G~~l 207 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT-------------IPTNRIRSIAFNKKIEGYADEAEYM 207 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT-------------SSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc-------------cccCCCcEEEEeecccccCCCCCEE
Confidence 668999983 4444444 444679999998877655433211 01125788999 9999977
Q ss_pred EEEecCC-------eEEEEECCC-Ceee-----EEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecc-------cC
Q 013436 243 VAGSSDD-------CIYVYDLEA-NKLS-----LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR-------CL 302 (443)
Q Consensus 243 ~~~~~dg-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~-------~~ 302 (443)
+++...+ .|.+++... +... ..+.. ......++++|.++.++++-..++.|..+|+. ..
T Consensus 208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 208 IVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp EEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred EEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence 7766554 377776444 2221 22322 23456778875577777777788899999986 22
Q ss_pred CCC----------CceeeeecCCCCCeEEEEECCCCCEE-EEEeCCCCEEEEeCC
Q 013436 303 NVK----------GKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIR 346 (443)
Q Consensus 303 ~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~ 346 (443)
... .+.+... +.......|+|+|+|++| ++-...+.|+.++..
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred eeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 110 0011112 223456799999999954 454567788886654
No 311
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.31 E-value=0.15 Score=49.95 Aligned_cols=199 Identities=9% Similarity=-0.011 Sum_probs=121.4
Q ss_pred CceEEEEECCCCCEEEE-EECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE-ECCCeEEEEECCCCc
Q 013436 125 SRAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGT 202 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~-g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~~ 202 (443)
..+..++|++.+..|+. -..++.|..++++.... .... ..+ -..+..+++.+.+..|..+ ...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~-~~g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVV-EFG-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-CSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEE-eCC-CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence 45789999997666554 44578899999876422 2211 111 1236678888765555444 456789999987653
Q ss_pred eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEEeeccCCCeEEEEEeCC
Q 013436 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (443)
...+.. .. -.....|++.|....|+.... .+.|...++...... .+.......+.|++.+.
T Consensus 114 ~~~l~~-~~---------------l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~P~GlalD~~ 176 (628)
T 4a0p_A 114 RQVLVW-KD---------------LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYA 176 (628)
T ss_dssp CEEEEC-SS---------------CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSCSSEEEEEEETT
T ss_pred EEEEEe-CC---------------CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECCCCCcceEEEccc
Confidence 322211 00 014678999996666666553 568888888655433 33334556789999744
Q ss_pred CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 281 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
.+.+.++-...+.|..+|+... ....+.........+++.. +.++++-...+.|...|..+++
T Consensus 177 ~~~LY~aD~~~~~I~~~d~dG~-----~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 177 KRRLYWTDLDTNLIESSNMLGL-----NREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSC-----SCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred cCEEEEEECCCCEEEEEcCCCC-----ceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 5555555566788999998621 1123333334456777764 4455555557788888865544
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.31 E-value=0.012 Score=51.94 Aligned_cols=188 Identities=11% Similarity=0.091 Sum_probs=100.6
Q ss_pred CCCEEEEEECC----CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC------CeEEEEECCCCcee
Q 013436 135 DGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDVGSGTME 204 (443)
Q Consensus 135 ~~~~l~~g~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~ 204 (443)
++.+++.|+.+ ..+.+||..++.-... ............+.+ ++++++.|+.+ ..+.+||..+.+..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSK-LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEE-ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEEC-CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 66777888755 5789999988743322 122222222222333 66777777765 46899999888765
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec---------CCeEEEEECCCCeeeEEeeccCC-CeEE
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRILAHTS-DVNT 274 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~-~v~~ 274 (443)
......... .+| ..+.+ +++.++.|+. -..+.+||+.+.+-...-..... .-.+
T Consensus 132 ~~~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 195 (306)
T 3ii7_A 132 TKPSMLTQR----------CSH----GMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHG 195 (306)
T ss_dssp EECCCSSCC----------BSC----EEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred eCCCCcCCc----------cee----EEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcce
Confidence 443222111 112 11222 6677777653 34588999988754322111111 1122
Q ss_pred EEEeCCCCCEEEEeeCC-----CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CCEEEEe
Q 013436 275 VCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWD 344 (443)
Q Consensus 275 i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd 344 (443)
++. .++++++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+||
T Consensus 196 ~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd 269 (306)
T 3ii7_A 196 LVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYN 269 (306)
T ss_dssp EEE--ETTEEEEECCEETTEEBCCEEEEETTTT--EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEE
T ss_pred EEE--ECCEEEEEeCCCCCCCCceEEEeeCCCC--cEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEc
Confidence 333 256677777654 35788888622 11222222222222333334 66777788754 4578888
Q ss_pred CCC
Q 013436 345 IRK 347 (443)
Q Consensus 345 ~~~ 347 (443)
+.+
T Consensus 270 ~~~ 272 (306)
T 3ii7_A 270 TET 272 (306)
T ss_dssp TTT
T ss_pred CCC
Confidence 876
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.26 E-value=0.024 Score=51.45 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=95.9
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCC--ccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccc-c
Q 013436 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA-N 208 (443)
Q Consensus 132 ~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~ 208 (443)
.+.+|..++.+ .++.||.-++..+. -.+...... .-..|..+..||+|++||..+. ..|.|..+..+...... .
T Consensus 28 ~~~n~t~i~~a-~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFI-QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEE-ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 33466666666 34788888877442 122222221 1114777999999999998755 57999988843221110 0
Q ss_pred ceecccCceeeccCC-CCceecEEEEEEeC---CCCEEEEEecCCeEEEEECCCC--eeeEEee---------ccCCCeE
Q 013436 209 VTEIHDGLDFSAADD-GGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEAN--KLSLRIL---------AHTSDVN 273 (443)
Q Consensus 209 ~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v~ 273 (443)
.........+..... .....+|..+.|+| .+..|++-..|+.|++||+... ++. .+. .....|.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 000000001111111 11345899999999 4568999999999999999752 222 222 2225788
Q ss_pred EEEEeCCCCCEEEEee--CCCeEEEE
Q 013436 274 TVCFGDESGHLIYSGS--DDNLCKVW 297 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~--~d~~i~iw 297 (443)
+++|. .++-.|+..+ ..|.|+-.
T Consensus 184 S~~Fg-~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 184 DLEFS-KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEC-TTSSCEEEEECTTSCEEEEE
T ss_pred EEEEc-CCCcEEEEEecCCCCCEEEE
Confidence 99997 6777677755 77877654
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.26 E-value=0.026 Score=49.54 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=99.0
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC-----eEEEEECCCCcee
Q 013436 135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTME 204 (443)
Q Consensus 135 ~~~~l~~g~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 204 (443)
++.+++.|+.+ ..+.+||..+..-... ............+.+ ++..++.|+.++ .+.+||+.+.+..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV-ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeC-CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 67777777754 3588999988743322 222222222222333 567777887653 5888998887765
Q ss_pred ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-------CeEEEEECCCCeeeEE--eeccCCCeEEE
Q 013436 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------DCIYVYDLEANKLSLR--ILAHTSDVNTV 275 (443)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~--~~~~~~~v~~i 275 (443)
......... .+| ..+.+ +++.++.|+.+ ..+.+||+.+.+-... +...... .++
T Consensus 138 ~~~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~ 200 (302)
T 2xn4_A 138 HVAPMNTRR----------SSV----GVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG-AGV 200 (302)
T ss_dssp EECCCSSCC----------BSC----EEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS-CEE
T ss_pred ecCCCCCcc----------cCc----eEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc-ccE
Confidence 443222110 111 11222 56777776542 4589999988754332 1111111 223
Q ss_pred EEeCCCCCEEEEeeCC-----CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC-----CEEEEeC
Q 013436 276 CFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDI 345 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~iwd~ 345 (443)
+. .++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.++ .+.+||+
T Consensus 201 ~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 201 GV--LNNLLYAVGGHDGPLVRKSVEVYDPTTN--AWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp EE--ETTEEEEECCBSSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred EE--ECCEEEEECCCCCCcccceEEEEeCCCC--CEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcC
Confidence 33 256777777764 36888998622 11112111111111122223 567777777553 4888888
Q ss_pred CC
Q 013436 346 RK 347 (443)
Q Consensus 346 ~~ 347 (443)
.+
T Consensus 275 ~~ 276 (302)
T 2xn4_A 275 TT 276 (302)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 315
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.24 E-value=0.099 Score=54.91 Aligned_cols=145 Identities=12% Similarity=0.147 Sum_probs=81.9
Q ss_pred CCEEEEEe----------cCCeEEEEECCCCeeeEEe-eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCc
Q 013436 239 GRELVAGS----------SDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (443)
Q Consensus 239 ~~~l~~~~----------~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 307 (443)
..+|++|+ ..|.|++|++..++..... ....++|++++-. +|+++++. ..+|++|++. ..+
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~----~~~ 915 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTVRLYEWT----TEK 915 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEEEEEEEC----TTS
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEEEEEECC----CCc
Confidence 46888886 3588999998755432222 1446789998864 45444433 4689999997 333
Q ss_pred eeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCCCccccCCcccccCcccccccCCCCCCcccCCCCeeEEE
Q 013436 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 387 (443)
Q Consensus 308 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (443)
.+..-..+-..|..+.....+++++.|..-..|.+...+.. ...+..
T Consensus 916 ~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~---------------------------------~~~L~~ 962 (1158)
T 3ei3_A 916 ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM---------------------------------EGNFEE 962 (1158)
T ss_dssp CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT---------------------------------TTEEEE
T ss_pred eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC---------------------------------CCeEEE
Confidence 23211111112322222224678888887777777654431 122334
Q ss_pred EeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccC
Q 013436 388 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (443)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~ 429 (443)
+..+.....+..+.+- +...++.+..+|.|.+.....
T Consensus 963 ~a~D~~~~~vta~~~l-----d~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEIL-----DDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEECCSCBCEEEEEEE-----ETTEEEEEETTSEEEEEEECT
T ss_pred EEeecccccEEEEEEE-----ccCcEEEEcCCCcEEEEecCC
Confidence 4333333333333321 234677888899999887654
No 316
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.21 E-value=0.096 Score=45.77 Aligned_cols=228 Identities=11% Similarity=0.184 Sum_probs=131.5
Q ss_pred CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCC
Q 013436 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 225 (443)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (443)
..|.|.|+..+..+.+. .-.. .+.-.+|..+.+|.-. ...++|+|+++.+........+
T Consensus 49 ~~VvIiDl~n~~~~~Rr--pi~A----dsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e-------------- 107 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRR--PISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-------------- 107 (365)
T ss_dssp EEEEEEETTSTTSCEEE--ECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS--------------
T ss_pred CEEEEEECCCCCCcccc--cccc----ceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC--------------
Confidence 47889999876433221 1111 1234689888877765 6789999999987766555433
Q ss_pred ceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEeeccC----CCeEEEEEeCCCCCEEEEeeC-------CCe
Q 013436 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHT----SDVNTVCFGDESGHLIYSGSD-------DNL 293 (443)
Q Consensus 226 ~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~----~~v~~i~~~~~~~~~l~~~~~-------d~~ 293 (443)
+|.-=.|-.+ +.|+..+ +..|+-|++... .+.+.+..|. ..|..-..+ ++.++++..+- .|.
T Consensus 108 ---~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~ 181 (365)
T 2xzh_A 108 ---DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVGA 181 (365)
T ss_dssp ---CEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEEC-TTSCEEEEEEEEEETTEEEEE
T ss_pred ---ccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEEC-CCCCEEEEEeEeccCCcccee
Confidence 4655666643 4455554 457999999754 4555555443 345555554 67777665542 368
Q ss_pred EEEEecccCCCCCceeeeecCCCCCeEEEEECCC---CCEEEEEeC---CCCEEEEeCCCC-CCccccCCcccccCcccc
Q 013436 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGK---DQAIKLWDIRKM-SSNASCNLGFRSYEWDYR 366 (443)
Q Consensus 294 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 366 (443)
+.+|..+ .+.-+.+.+|......+.+..+ ..+|+.+.. .+.++|-++... ... ........
T Consensus 182 mQLYS~e-----r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~-------~~f~kk~v 249 (365)
T 2xzh_A 182 MQLYSVD-----RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN-------QPFPKKAV 249 (365)
T ss_dssp EEEEETT-----TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC-------CCCCCEEE
T ss_pred EEEEeec-----ccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC-------CCcccccc
Confidence 8899984 5666778888665544443322 123333332 257888888552 111 11111111
Q ss_pred cccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhh
Q 013436 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILF 434 (443)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~ 434 (443)
.+.++|+. ..+-+ +.+. .|+.-..++.-+.-|.|++||+.||.+++
T Consensus 250 di~fppea-----~~DFP-------------Vamq----vs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 250 DVFFPPEA-----QNDFP-------------VAMQ----ISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EECCCTTC-----TTCCE-------------EEEE----EETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred eeeCCccc-----cCCce-------------EEEE----ecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 12222211 01111 1112 23345678888888999999999998775
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.18 E-value=0.022 Score=49.95 Aligned_cols=188 Identities=15% Similarity=0.082 Sum_probs=98.7
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCe---EEEEeeecCCccceEEEEEECCCCCeEEEEECC-----CeEEEEECCCC
Q 013436 135 DGSLFVAGFQA-----SQIRIYDVERGW---KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSG 201 (443)
Q Consensus 135 ~~~~l~~g~~d-----~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 201 (443)
++.+++.|+.+ ..+.+||..++. -... ............+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~-~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSV-APMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEE-CCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEEC-CCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 57777777754 458999988764 2221 111111222222333 56777777654 36889999887
Q ss_pred ceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEeeccCCC-eEEE
Q 013436 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHTSD-VNTV 275 (443)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-v~~i 275 (443)
+.......... ..+| ..+.+ +++.++.|+.+ ..+.+||+.+.+-...-...... -.++
T Consensus 139 ~W~~~~~~p~~----------r~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 202 (301)
T 2vpj_A 139 QWSMLGDMQTA----------REGA----GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGV 202 (301)
T ss_dssp EEEEEEECSSC----------CBSC----EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred eEEECCCCCCC----------cccc----eEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceE
Confidence 76543322111 0111 11222 67777777654 45899999887643321111111 1122
Q ss_pred EEeCCCCCEEEEeeCC-----CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CCEEEEeC
Q 013436 276 CFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDI 345 (443)
Q Consensus 276 ~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~ 345 (443)
+. .++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+||+
T Consensus 203 ~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 203 AL--LNDHIYVVGGFDGTAHLSSVEAYNIRTD--SWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp EE--ETTEEEEECCBCSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred EE--ECCEEEEEeCCCCCcccceEEEEeCCCC--cEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence 22 246777777764 46889998722 11122112111112223333 56777777755 35778888
Q ss_pred CC
Q 013436 346 RK 347 (443)
Q Consensus 346 ~~ 347 (443)
.+
T Consensus 277 ~~ 278 (301)
T 2vpj_A 277 II 278 (301)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.01 E-value=0.045 Score=48.40 Aligned_cols=193 Identities=15% Similarity=0.044 Sum_probs=99.2
Q ss_pred EEEECCCCCEEEEEEC-----C------CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC-------
Q 013436 129 VSQFSADGSLFVAGFQ-----A------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------- 190 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~~-----d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d------- 190 (443)
......++++++.|+. . ..+.+||..++.-. ..............+.+ ++..++.|+.+
T Consensus 39 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 115 (315)
T 4asc_A 39 VSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERC 115 (315)
T ss_dssp EEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCB
T ss_pred eEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcc
Confidence 3344467888888873 1 12778898887432 22112211111222222 56677777632
Q ss_pred -CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-C-----CeEEEEECCCCeeeE
Q 013436 191 -PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D-----DCIYVYDLEANKLSL 263 (443)
Q Consensus 191 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~ 263 (443)
..+.+||..+++........... .+| ..+. -+++.++.|+. + ..+.+||+.+.+-..
T Consensus 116 ~~~~~~~d~~~~~W~~~~~~p~~r----------~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~ 179 (315)
T 4asc_A 116 LDSVMCYDRLSFKWGESDPLPYVV----------YGH----TVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE 179 (315)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCC----------BSC----EEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE
T ss_pred cceEEEECCCCCcEeECCCCCCcc----------cce----eEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE
Confidence 36899999888765443222111 111 1122 25677777776 2 469999998875332
Q ss_pred E--eeccCCCeEEEEEeCCCCCEEEEeeCCC-----eEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC
Q 013436 264 R--ILAHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 336 (443)
Q Consensus 264 ~--~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 336 (443)
. +...... .+++. .++++++.|+.++ .+.+||+... ....+..+.........+.+ ++++++.|+.
T Consensus 180 ~~~~p~~r~~-~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~ 252 (315)
T 4asc_A 180 LAPMQTARSL-FGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQERSSLSLVSL--VGTLYAIGGF 252 (315)
T ss_dssp CCCCSSCCBS-CEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEEEE
T ss_pred CCCCCCchhc-eEEEE--ECCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCcccceeEEEE--CCEEEEECCc
Confidence 1 1111111 12222 2567777777654 5788888622 11122212111112223333 5677777775
Q ss_pred CC--------------CEEEEeCCC
Q 013436 337 DQ--------------AIKLWDIRK 347 (443)
Q Consensus 337 dg--------------~i~iwd~~~ 347 (443)
++ .+.+||+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~v~~yd~~~ 277 (315)
T 4asc_A 253 ATLETESGELVPTELNDIWRYNEEE 277 (315)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTT
T ss_pred cccCcCCccccccccCcEEEecCCC
Confidence 32 367788776
No 319
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.041 Score=48.92 Aligned_cols=195 Identities=9% Similarity=0.028 Sum_probs=102.7
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEE--CCCCCeEEEE--ECCCeEEEEECCCCceeccccceec
Q 013436 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPDQRHLVYA--SMSPIVHIVDVGSGTMESLANVTEI 212 (443)
Q Consensus 137 ~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~--s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~ 212 (443)
.++++++.||.|.-+|..+|+.+-+.... ...++....- .+.+..++.+ +.||.|..++..++...........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 47889999999999999999776654332 1112221110 0112234443 5899999999888754322222111
Q ss_pred ccCceeeccCCCCceecEEE---EEE-----eCCCCEEEEEecCCeEEEEECCCCeeeEEeeccC--CC-----eEEEEE
Q 013436 213 HDGLDFSAADDGGYSFGIFS---LKF-----STDGRELVAGSSDDCIYVYDLEANKLSLRILAHT--SD-----VNTVCF 277 (443)
Q Consensus 213 ~~~~~~~~~~~~~~~~~i~~---l~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~-----v~~i~~ 277 (443)
.. ..++.. ... ...+..+++|+.+|.++-.|+++|+.+..+.... .. ..|...
T Consensus 89 v~------------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~ 156 (339)
T 2be1_A 89 VS------------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPE 156 (339)
T ss_dssp HT------------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------
T ss_pred ee------------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccc
Confidence 10 001111 000 0135578999999999999999999988876321 10 111111
Q ss_pred e----CCCCCEEEEeeCCCeEEEEecccCCCCCceeeee-----cCCCCC--e-EEEEECCCCCEEEEEeCCCCEEEEeC
Q 013436 278 G----DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-----MGHLEG--I-TFIDSRGDGRYLISNGKDQAIKLWDI 345 (443)
Q Consensus 278 ~----~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~--v-~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (443)
. +..+..++.+..+..+.+.+ + +++ +..+ ...... + ..-..+.++.+ +.++.||.|.-+|.
T Consensus 157 ~d~~~d~~~~~v~ig~~~y~v~~~~-~----sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~ 229 (339)
T 2be1_A 157 EKIKLQECENMIVIGKTIFELGIHS-Y----DGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDL 229 (339)
T ss_dssp --------CCEEEEEEEEEECEECC-T----TSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECS
T ss_pred cccccccCCCeEEEecceEEEEEEC-C----CCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEEC
Confidence 0 01245677777777777666 3 222 1111 111000 0 00001224555 44677888888888
Q ss_pred CCCCCcc
Q 013436 346 RKMSSNA 352 (443)
Q Consensus 346 ~~~~~~~ 352 (443)
.++...+
T Consensus 230 ~~G~~~W 236 (339)
T 2be1_A 230 DFRIARW 236 (339)
T ss_dssp TTCCEEE
T ss_pred CCCcEEE
Confidence 8766554
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.88 E-value=0.041 Score=48.53 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=98.0
Q ss_pred CCCEEEEEEC----C-----CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC-----CeEEEEECCC
Q 013436 135 DGSLFVAGFQ----A-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGS 200 (443)
Q Consensus 135 ~~~~l~~g~~----d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~ 200 (443)
++.+++.|+. + ..+.+||..+..-.. .............+.+ +++.++.|+.+ ..+.+||+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP-CAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE-CCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE-CCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence 6677777765 2 458899998874322 2122222222222333 66777776643 3688999988
Q ss_pred CceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEE--eeccCCCeE
Q 013436 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLR--ILAHTSDVN 273 (443)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~ 273 (443)
.+........... .+| ..+.+ ++..++.|+.+ ..+.+||+.+.+-... +...... .
T Consensus 147 ~~W~~~~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~ 209 (308)
T 1zgk_A 147 DEWHLVAPMLTRR----------IGV----GVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG-A 209 (308)
T ss_dssp TEEEECCCCSSCC----------BSC----EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS-C
T ss_pred CeEeECCCCCccc----------cce----EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc-c
Confidence 7765443322111 111 12222 67777777654 4589999987753321 1111111 2
Q ss_pred EEEEeCCCCCEEEEeeCC-----CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CCEEEE
Q 013436 274 TVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLW 343 (443)
Q Consensus 274 ~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iw 343 (443)
+++. -++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+|
T Consensus 210 ~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~y 283 (308)
T 1zgk_A 210 GVCV--LHNCIYAAGGYDGQDQLNSVERYDVETE--TWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECY 283 (308)
T ss_dssp EEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEE
T ss_pred eEEE--ECCEEEEEeCCCCCCccceEEEEeCCCC--cEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEE
Confidence 2333 256677777764 46889998622 11111112111112222223 56777777654 347788
Q ss_pred eCCC
Q 013436 344 DIRK 347 (443)
Q Consensus 344 d~~~ 347 (443)
|+.+
T Consensus 284 d~~~ 287 (308)
T 1zgk_A 284 DPDT 287 (308)
T ss_dssp ETTT
T ss_pred cCCC
Confidence 8776
No 321
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.87 E-value=0.088 Score=46.56 Aligned_cols=193 Identities=14% Similarity=0.108 Sum_probs=97.7
Q ss_pred EEECCCCCEEEEEEC----CC-------eEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC-------C
Q 013436 130 SQFSADGSLFVAGFQ----AS-------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-------P 191 (443)
Q Consensus 130 ~~~s~~~~~l~~g~~----d~-------~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-------g 191 (443)
.....++.+++.|+. ++ .+.+||..++.-.. .............+.+ +++.++.|+.+ .
T Consensus 51 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 127 (318)
T 2woz_A 51 SIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLD 127 (318)
T ss_dssp EEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEE
T ss_pred EEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CCCCCccccccceEEE--CCEEEEEcCccCCCCcccc
Confidence 344567888888873 11 27788988764332 2112211111222223 56777777754 2
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec------CCeEEEEECCCCeeeEEe
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRI 265 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~ 265 (443)
.+.+||+.+.+........... .+| ..+. .+++.++.|+. -..+.+||+.+.+-...-
T Consensus 128 ~~~~yd~~~~~W~~~~~~p~~r----------~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~ 191 (318)
T 2woz_A 128 SVLCYDPVAAKWSEVKNLPIKV----------YGH----NVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA 191 (318)
T ss_dssp EEEEEETTTTEEEEECCCSSCE----------ESC----EEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC
T ss_pred eEEEEeCCCCCEeECCCCCCcc----------ccc----EEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC
Confidence 5888999887765443222110 012 1122 36777777764 245999999887643221
Q ss_pred eccCC-CeEEEEEeCCCCCEEEEeeCC-----CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC--
Q 013436 266 LAHTS-DVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-- 337 (443)
Q Consensus 266 ~~~~~-~v~~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-- 337 (443)
..... .-.+++. .++++++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+
T Consensus 192 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~ 265 (318)
T 2woz_A 192 PMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTN--KWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMI 265 (318)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTC--CEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCB
T ss_pred CCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCC--eEEECCCCCCcccceEEEEE--CCEEEEECCeecc
Confidence 11111 1122333 246677777643 35678887632 11222222211112222333 56677776643
Q ss_pred ------------CCEEEEeCCC
Q 013436 338 ------------QAIKLWDIRK 347 (443)
Q Consensus 338 ------------g~i~iwd~~~ 347 (443)
..+.+||+.+
T Consensus 266 ~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 266 QLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp C----CCBCCBCCCEEEEETTT
T ss_pred CCCCceeccceeeeEEEEeCCC
Confidence 3477777766
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.85 E-value=0.15 Score=46.44 Aligned_cols=110 Identities=18% Similarity=0.093 Sum_probs=75.0
Q ss_pred EeCCCCEEEEEecCCeEEEEECCCCeeeEEeecc----CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCC-CCC---
Q 013436 235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-VKG--- 306 (443)
Q Consensus 235 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~--- 306 (443)
.+.+|..++++- ++.||.-++......+.+... -..|..+..+ ++|++||..+. ..|.|..+.... ...
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlS-psG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISS-TSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEEC-TTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEEC-CCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 344677676664 578988888755445555432 2368889998 88999988764 478888876211 011
Q ss_pred --c--eeeeecC------CCCCeEEEEECCC---CCEEEEEeCCCCEEEEeCCC
Q 013436 307 --K--PAGVLMG------HLEGITFIDSRGD---GRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 307 --~--~~~~~~~------~~~~v~~~~~~~~---~~~l~s~~~dg~i~iwd~~~ 347 (443)
. ....+.- ...+|..+.|+|- +..|++-..|+.|++||+..
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 0 1112221 2567999999994 56899999999999999987
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.71 E-value=0.32 Score=43.72 Aligned_cols=153 Identities=11% Similarity=0.051 Sum_probs=78.4
Q ss_pred ceEEEEECCCCC-EEEEEECCCeEEEEECCCCeEEEEeee----cCCccceEEEEEECCC---CCeEEEEE-C-------
Q 013436 126 RAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDIL----AKSLRWTVTDTSLSPD---QRHLVYAS-M------- 189 (443)
Q Consensus 126 ~v~~~~~s~~~~-~l~~g~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~v~~i~~s~~---~~~l~~~~-~------- 189 (443)
....++|.|+|+ +++ +...|.|++++.. +........ ..........|+++|+ +..|.++. .
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 468999999999 555 4567999999854 322111110 1112234789999996 44444432 2
Q ss_pred CCeEEEEECCCCc--eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-------------CCeEEEE
Q 013436 190 SPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVY 254 (443)
Q Consensus 190 dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-------------dg~i~iw 254 (443)
...|..|++.... ......+.. .+ .......| ....|+|.|||.++++.+. .|.|.-+
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~---~~--p~~~~~~h--~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri 169 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFR---QM--PKLSTGNH--FGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRL 169 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEE---CS--SCCBSSSC--CCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEE
T ss_pred eeEEEEEEECCCCCCCCceEEEEE---EC--CCCCCCcc--cCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEE
Confidence 2356666665431 111000000 00 00001123 2346999999965555433 2567777
Q ss_pred ECCCCe------------eeEEeeccCCCeEEEEEeCCCCCEEEE
Q 013436 255 DLEANK------------LSLRILAHTSDVNTVCFGDESGHLIYS 287 (443)
Q Consensus 255 d~~~~~------------~~~~~~~~~~~v~~i~~~~~~~~~l~~ 287 (443)
|....- ....+.........++|.+..+.++++
T Consensus 170 ~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 170 TDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp ETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence 765320 111221112346789997446665554
No 324
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.61 E-value=0.92 Score=47.73 Aligned_cols=193 Identities=12% Similarity=0.081 Sum_probs=101.2
Q ss_pred CCCceEEEEECCC------CCEEEEEEC-CCeEEEEECCCCeEEEEeeecC-CccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 123 TTSRAYVSQFSAD------GSLFVAGFQ-ASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 123 h~~~v~~~~~s~~------~~~l~~g~~-d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
....|.|+++.|. ++++|+|.. |++|+|+++.+.+.+....... .....|.-+.+ ....+|.+|-.||.+.
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALF 630 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEE
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEE
Confidence 3568999999864 379999996 9999999998765554332211 12222333334 2345788899999876
Q ss_pred EEECC--CCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEecCCeEEEEECCCCeeeEEeeccCCC
Q 013436 195 IVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (443)
Q Consensus 195 iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (443)
-+.+. ++.........- | ..++.-..+...+. .+++.+ +....+|--+ ++.... .-.-..
T Consensus 631 ~~~~d~~tg~l~d~r~~~L-------------G-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s-~l~~~~ 693 (1158)
T 3ei3_A 631 YFGLNIETGLLSDRKKVTL-------------G-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFS-NVNLKE 693 (1158)
T ss_dssp EEEECTTTCCEEEEEEEEC-------------C-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEE-EBSSSC
T ss_pred EEEEcCCCCccccceeEEc-------------C-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEe-ccChHH
Confidence 66554 343322111100 0 01333333433333 233333 3333344433 332211 111223
Q ss_pred eEEE-EEeCC-CCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q 013436 272 VNTV-CFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (443)
Q Consensus 272 v~~i-~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 337 (443)
+..+ .|+.. ..+-++..+ ++.++|..+... ..-.+..+. -...+..++++|+.+.++.+..+
T Consensus 694 v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~--~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 694 VNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEI--QKLHIRTVP-LYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp CCEEEEECCSSSTTEEEEEC-SSCEEEEEECCS--SSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEE
T ss_pred hceEeccCcccCCCcEEEEc-CCceEEEEeccc--CCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEe
Confidence 3333 34322 234455444 456888887532 222333332 34578899999988877765543
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.59 E-value=0.095 Score=55.09 Aligned_cols=230 Identities=11% Similarity=0.173 Sum_probs=128.8
Q ss_pred CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCC
Q 013436 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (443)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (443)
...|.|.|+..+..+.+. ... --+.-.+|..+.+|.-. ..+++|+|+++..........+
T Consensus 47 ~~~vvIidl~~~~~~~rr--pi~----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e------------- 106 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR--PIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (1630)
T ss_pred CceEEEEECCCCCCcccc--ccc----chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-------------
Confidence 347999999886433211 111 12244688887776654 6789999999887665555433
Q ss_pred CceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEeecc----CCCeEEEEEeCCCCCEEEEee-------CCC
Q 013436 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAH----TSDVNTVCFGDESGHLIYSGS-------DDN 292 (443)
Q Consensus 225 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~----~~~v~~i~~~~~~~~~l~~~~-------~d~ 292 (443)
+|.-=.|-.+ +.|+..+ +..|+-|++... .+++.+..| ...|..-..+ ++.++++..| -.|
T Consensus 107 ----~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d-~~~kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 107 ----DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVG 179 (1630)
T ss_pred ----CceEEEecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeC-CCCCeEEEEeeccCCCcccc
Confidence 4554566543 3455544 456999999743 343344333 3455555664 6677766544 347
Q ss_pred eEEEEecccCCCCCceeeeecCCCCCeEEEEECC--C-CCEEEEEeC---CCCEEEEeCCCC-CCccccCCcccccCccc
Q 013436 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG--D-GRYLISNGK---DQAIKLWDIRKM-SSNASCNLGFRSYEWDY 365 (443)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~ 365 (443)
.+.+|... ...-+.+.||......+.... . ...++.+.. .+.++|-++... .... ......
T Consensus 180 ~mQLyS~e-----r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~-------~f~kk~ 247 (1630)
T 1xi4_A 180 AMQLYSVD-----RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ-------PFPKKA 247 (1630)
T ss_pred eeeeeecc-----cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC-------CCcccc
Confidence 88999885 455556777766555444432 1 223332222 267888888653 1110 010111
Q ss_pred ccccCCCCCCcccCCCCeeEEEEeccceeeeeeEEEecCCccCCccEEEEeeCCCeEEEEEccChhhhhH
Q 013436 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSIQILFC 435 (443)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~tg~~dg~v~iwd~~~g~~~~~ 435 (443)
..+.++|+.. .+- .+.+ ..|+....++.-+.-|.|++||+.||.+++.
T Consensus 248 ~~~~~~~~~~-----~Df-------------pv~~----~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 248 VDVFFPPEAQ-----NDF-------------PVAM----QISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred ccccCCcccc-----cCc-------------ceEE----EeccccCEEEEEecCceEEEEecccchhhhh
Confidence 1112222100 000 1111 1334556788888899999999999998764
No 326
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.54 E-value=0.36 Score=42.25 Aligned_cols=202 Identities=11% Similarity=0.095 Sum_probs=123.0
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc-eeccc
Q 013436 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT-MESLA 207 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 207 (443)
+.-.+|..+.||.-. ..++.|+|+++..++....... .|.-=.|-.+. .|+..+. ..|+-|++.... ....
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e----~VvfWkWis~~-~L~lVT~-taVyHWs~~~~s~P~kv- 142 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD----DVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKM- 142 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS----CEEEEEECSSS-EEEEEES-SEEEEEESSTTCCCEEE-
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC----ccEEEEecCCC-eEEEEcC-CcEEEEcccCCCCCcee-
Confidence 445688888888775 6889999999987776544433 47777776544 4554443 469999997532 1111
Q ss_pred cceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-------CCeEEEEECCCCeeeEEeeccCCCeEEEEEe--
Q 013436 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------DDCIYVYDLEANKLSLRILAHTSDVNTVCFG-- 278 (443)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-- 278 (443)
.+.+..+ ....|..-..+++.++++..+- .|.+.+|..+.+. .+.+.+|...-..+...
T Consensus 143 --FdR~~~L---------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~ 210 (365)
T 2xzh_A 143 --FDRHSSL---------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGN 210 (365)
T ss_dssp --EECCGGG---------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTC
T ss_pred --eecchhc---------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCC
Confidence 1111111 0136778888888887766542 3778999987664 56677775544433331
Q ss_pred CCCCCEEEEeeC---CCeEEEEecccCC-----CCCceeeeecC---CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 279 DESGHLIYSGSD---DNLCKVWDRRCLN-----VKGKPAGVLMG---HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 279 ~~~~~~l~~~~~---d~~i~iwd~~~~~-----~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+...++++.+.. .+.++|.++.... ...+.+..+.. -..--.++..++.-..+..-+.-|.|++||+.+
T Consensus 211 ~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleT 290 (365)
T 2xzh_A 211 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 290 (365)
T ss_dssp SSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEccc
Confidence 111223443333 2589999885321 01112222221 133445677787777888888999999999999
Q ss_pred CCC
Q 013436 348 MSS 350 (443)
Q Consensus 348 ~~~ 350 (443)
+.+
T Consensus 291 gt~ 293 (365)
T 2xzh_A 291 GTC 293 (365)
T ss_dssp CCE
T ss_pred CcE
Confidence 543
No 327
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.52 E-value=0.37 Score=43.28 Aligned_cols=202 Identities=10% Similarity=-0.034 Sum_probs=96.7
Q ss_pred CCceEEEEECCC---CCEEEEEEC-C-----CeEEEEECCCCeE-----EEEeeec-CCccceEEEEEECCCCCeEEEEE
Q 013436 124 TSRAYVSQFSAD---GSLFVAGFQ-A-----SQIRIYDVERGWK-----IQKDILA-KSLRWTVTDTSLSPDQRHLVYAS 188 (443)
Q Consensus 124 ~~~v~~~~~s~~---~~~l~~g~~-d-----~~i~iwd~~~~~~-----~~~~~~~-~~~~~~v~~i~~s~~~~~l~~~~ 188 (443)
......++|+|+ +..|+++.. . +.|..|+...+.. +...... .........++|.|||.+.++.+
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 456889999998 555554433 2 5788888775411 1111110 11111235799999997666543
Q ss_pred CC-------------CeEEEEECCCCceeccccce-ec--ccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCCe-
Q 013436 189 MS-------------PIVHIVDVGSGTMESLANVT-EI--HDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDC- 250 (443)
Q Consensus 189 ~d-------------g~i~iwd~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~- 250 (443)
.. |.|.-++... ... .-+.. .. .....+. .++. ....++|+| ++.++++-.....
T Consensus 154 ~~~~~~~~~d~~~~~g~I~ri~~dG-~~p-~~npf~~~~~~~~~i~a----~G~r-np~g~a~d~~~g~l~v~d~g~~~~ 226 (352)
T 2ism_A 154 EVYERELAQDLASLGGKILRLTPEG-EPA-PGNPFLGRRGARPEVYS----LGHR-NPQGLAWHPKTGELFSSEHGPSGE 226 (352)
T ss_dssp CTTCGGGGGCTTCSSSEEEEECTTS-SBC-TTCTTTTCTTSCTTEEE----ECCS-EECCCEECTTTCCEEEEEECC---
T ss_pred CCCCCccccCCCCCceEEEEEcCCC-CCC-CCCcccCCCCCCccEEE----EcCC-CcccEEEECCCCCEEEEEcCCCCC
Confidence 21 3444444432 100 00000 00 0000000 0111 245688999 5664444332222
Q ss_pred -------EEEEECCC----------------CeeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCC--
Q 013436 251 -------IYVYDLEA----------------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-- 305 (443)
Q Consensus 251 -------i~iwd~~~----------------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-- 305 (443)
|.+..... ..++..+ .+......++|. ++.++++....+.|...++......
T Consensus 227 ~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~ 303 (352)
T 2ism_A 227 QGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWR 303 (352)
T ss_dssp ---CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEE
T ss_pred CCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCccee
Confidence 33332111 0122222 222345677773 5666666666677887777522100
Q ss_pred CceeeeecCCCCCeEEEEECCCCCEEEEEe
Q 013436 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (443)
Q Consensus 306 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 335 (443)
......+......+..+++.|||.++++..
T Consensus 304 ~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 304 VLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 000122222335788999999998777654
No 328
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.49 E-value=0.45 Score=42.77 Aligned_cols=198 Identities=10% Similarity=-0.006 Sum_probs=98.2
Q ss_pred CCceEEEEECCC---CCEEEEEEC----C----CeEEEEECCCC--e-----EEEEeee-cCCccceEEEEEECCCCCeE
Q 013436 124 TSRAYVSQFSAD---GSLFVAGFQ----A----SQIRIYDVERG--W-----KIQKDIL-AKSLRWTVTDTSLSPDQRHL 184 (443)
Q Consensus 124 ~~~v~~~~~s~~---~~~l~~g~~----d----~~i~iwd~~~~--~-----~~~~~~~-~~~~~~~v~~i~~s~~~~~l 184 (443)
......++|+|+ +..|+++.. + +.|..|+...+ . .+..... ...| ....|+|.|||.++
T Consensus 72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Ly 149 (354)
T 3a9g_A 72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLY 149 (354)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEE
T ss_pred CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEE
Confidence 356889999998 555554433 3 56778887654 1 1111111 1122 24679999999866
Q ss_pred EEEECC-------------CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeC-CCCEEEEEecCC-
Q 013436 185 VYASMS-------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDD- 249 (443)
Q Consensus 185 ~~~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg- 249 (443)
++.+.. |.|.-++.... . ..-+.. .....+. .++. ....++|+| ++.++++-....
T Consensus 150 vt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~-p~~npf--~~~~i~a----~G~r-np~Gla~d~~~g~l~v~d~g~~~ 220 (354)
T 3a9g_A 150 ITTGDAADPRLAQDLSSLAGKILRVDEEGR-P-PADNPF--PNSPIWS----YGHR-NPQGIDWHRASGVMVATEHGPVG 220 (354)
T ss_dssp EECCCTTCGGGGTCTTCCSSEEEEECTTSC-C-CTTSSS--TTCCEEE----ECCS-CCCEEEECTTTCCEEEEECCSSS
T ss_pred EEECCCCCCccccCCCCCCeEEEEEcCCCC-C-CCCCCC--CCCcEEE----EccC-CcceEEEeCCCCCEEEEecCCCC
Confidence 664322 34444443321 0 000000 0000000 0111 245689999 566444432211
Q ss_pred --eEEEEECCC--------C--------eeeEEeeccCCCeEEEEEeC------CCCCEEEEeeCCCeEEEEecccCCCC
Q 013436 250 --CIYVYDLEA--------N--------KLSLRILAHTSDVNTVCFGD------ESGHLIYSGSDDNLCKVWDRRCLNVK 305 (443)
Q Consensus 250 --~i~iwd~~~--------~--------~~~~~~~~~~~~v~~i~~~~------~~~~~l~~~~~d~~i~iwd~~~~~~~ 305 (443)
.|.+...-. + .++..+.........++|.. .++.++++.-..+.|...++...
T Consensus 221 ~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~--- 297 (354)
T 3a9g_A 221 HDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN--- 297 (354)
T ss_dssp CCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG---
T ss_pred CcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC---
Confidence 244332111 0 12222211223567777731 35667766666778888887621
Q ss_pred Ccee--eee-cCCCCCeEEEEECCCCCEEEEEe
Q 013436 306 GKPA--GVL-MGHLEGITFIDSRGDGRYLISNG 335 (443)
Q Consensus 306 ~~~~--~~~-~~~~~~v~~~~~~~~~~~l~s~~ 335 (443)
+... ..+ .+....+..+++.|||.++++..
T Consensus 298 g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 298 MEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp GCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 1221 222 23345789999999998777664
No 329
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.47 E-value=0.22 Score=49.37 Aligned_cols=198 Identities=16% Similarity=0.099 Sum_probs=105.6
Q ss_pred CCCCEEEEEECC----CeEEEEECCCCeEEEEeee-----cCCccceEEEEEECCCCCeEEEEECC------CeEEEEEC
Q 013436 134 ADGSLFVAGFQA----SQIRIYDVERGWKIQKDIL-----AKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDV 198 (443)
Q Consensus 134 ~~~~~l~~g~~d----~~i~iwd~~~~~~~~~~~~-----~~~~~~~v~~i~~s~~~~~l~~~~~d------g~i~iwd~ 198 (443)
.++.+++.|+.+ ..+.+||..++........ .......-..+.+..+++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 567788888753 4588999887743322201 11112222333343367777887754 35889999
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCC--eEEEEECCCCeeeEEe-----eccCCC
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRI-----LAHTSD 271 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~-----~~~~~~ 271 (443)
.+.+........... .+| +++...++..++.|+.++ .+.+||..+.+-...- ......
T Consensus 476 ~t~~W~~~~~~p~~R----------~~h-----~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 540 (695)
T 2zwa_A 476 KTREWSMIKSLSHTR----------FRH-----SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLV 540 (695)
T ss_dssp TTTEEEECCCCSBCC----------BSC-----EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCB
T ss_pred CCCcEEECCCCCCCc----------ccc-----eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccc
Confidence 887665543322111 111 222223788888887654 6999999887633221 111122
Q ss_pred eEEEEEeCCCCCEEEEeeC--C-----CeEEEEecccCCC----CCceeeeec-CCCCCeEEEEECCCCCEEEEEeC---
Q 013436 272 VNTVCFGDESGHLIYSGSD--D-----NLCKVWDRRCLNV----KGKPAGVLM-GHLEGITFIDSRGDGRYLISNGK--- 336 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~~--d-----~~i~iwd~~~~~~----~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~--- 336 (443)
..++.+....+.+++.|+. + ..+.+||+..... ....+.... ........+.+ .++++++.|+.
T Consensus 541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPS 619 (695)
T ss_dssp SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSS
T ss_pred eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCC
Confidence 2335555333677777775 2 4688899873320 011111110 11111222323 23677777774
Q ss_pred -----CCCEEEEeCCC
Q 013436 337 -----DQAIKLWDIRK 347 (443)
Q Consensus 337 -----dg~i~iwd~~~ 347 (443)
...|.+||+.+
T Consensus 620 ~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLS 635 (695)
T ss_dssp CCCCTTTSEEEEETTT
T ss_pred CCCCCCCeEEEEECCC
Confidence 24588888876
No 330
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.09 Score=46.72 Aligned_cols=144 Identities=13% Similarity=0.154 Sum_probs=80.8
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEE---EeCCCCEEEEE-ecCCeEEEEECC
Q 013436 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK---FSTDGRELVAG-SSDDCIYVYDLE 257 (443)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~---~~~~~~~l~~~-~~dg~i~iwd~~ 257 (443)
..+++++.||.|+-+|..+|+..-........ ++.... ...++..++.. +.||.|+.+|..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~---------------p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~ 75 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQ---------------PLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH 75 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSC---------------CSEECCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccC---------------CcEEecCCccccCCcEEEEEECCCCEEEEEECC
Confidence 36888999999999999998876554432000 010000 00123333333 589999999998
Q ss_pred CCeeeEEeec----cCCCeEE---EEEeC----CCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCC-C------e
Q 013436 258 ANKLSLRILA----HTSDVNT---VCFGD----ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-G------I 319 (443)
Q Consensus 258 ~~~~~~~~~~----~~~~v~~---i~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~------v 319 (443)
+|.....+.. ...++.. ..+.+ ..+..+++|+.+|.+...|++ +++.+..+..... . .
T Consensus 76 ~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~----tG~~~W~~~~~~~~~~~~~~~e 151 (339)
T 2be1_A 76 QGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML----NGEIISAFGPGSKNGYFGSQSV 151 (339)
T ss_dssp TEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT----TCCEEEEESTTCBCC-------
T ss_pred CCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC----CCcEEEEEecCCCccccccccc
Confidence 8865444431 1222221 00000 145688999999999999998 8888887763211 0 0
Q ss_pred EEEEEC-----CCCCEEEEEeCCCCEEEEe
Q 013436 320 TFIDSR-----GDGRYLISNGKDQAIKLWD 344 (443)
Q Consensus 320 ~~~~~~-----~~~~~l~s~~~dg~i~iwd 344 (443)
.|.... -.+..++.+..+..+.+.+
T Consensus 152 ~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 152 DCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp -------------CCEEEEEEEEEECEECC
T ss_pred ccccccccccccCCCeEEEecceEEEEEEC
Confidence 111110 1234566666666666666
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.43 E-value=0.17 Score=41.55 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=84.0
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCe
Q 013436 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~ 250 (443)
.+..++|+|++.+.++ .+|.++-.+..+.....-....... ...+.. ....+.|.|+|.+.++ .||.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I--------G~~Gw~-~F~a~~fD~~G~LYav--~dG~ 108 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI--------GNGGWN-QFQFLFFDPNGYLYAV--SKDK 108 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE--------ECSCGG-GCSEEEECTTSCEEEE--ETTE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe--------cccccc-cceEEEECCCCCEEEe--CCCE
Confidence 4779999999986666 6777666555443222111110000 000111 1367899999987766 5699
Q ss_pred EEEEECCCCeee------EEe-eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCC--ceeeeec-CCCCCeE
Q 013436 251 IYVYDLEANKLS------LRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG--KPAGVLM-GHLEGIT 320 (443)
Q Consensus 251 i~iwd~~~~~~~------~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~-~~~~~v~ 320 (443)
|+-++-.+...- ..+ ...=..+..|.+. +++.+.++. |+.++-.......... .....+- ..-....
T Consensus 109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred EEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence 988875332111 111 1111456888886 888877666 7774332211000000 0011111 2223445
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 321 FIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
.+.|.+++.++++. ++ ++|....+
T Consensus 186 ~l~f~~~G~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp EEEECTTSCEEEEE--TT--EEEEESCC
T ss_pred EEEECCCCcEEEEe--CC--eEEecCCc
Confidence 57799999877776 66 66665553
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.20 E-value=0.18 Score=41.44 Aligned_cols=149 Identities=13% Similarity=0.007 Sum_probs=78.8
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeE-----EEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK-----IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 200 (443)
.+..++|+|+|.+.++ .+|.+.-.+..++.. ..+.+-..+-.. ..++.|.|+|.+.++ .||.|.-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5669999999997777 667666555533100 001111111111 467899999987777 569887776533
Q ss_pred Cceeccccc-eecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCe------eeEEee-ccCCCe
Q 013436 201 GTMESLANV-TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK------LSLRIL-AHTSDV 272 (443)
Q Consensus 201 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~-~~~~~v 272 (443)
......... ..... +--..+..|.|.|+|.+.++. ++.++-....++. ....+- ..-..-
T Consensus 117 ~~~~~Wl~~a~~vg~----------~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~y 184 (236)
T 1tl2_A 117 SDTDNWIARATEVGS----------GGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTF 184 (236)
T ss_dssp STTCCHHHHSEEEEC----------SSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGE
T ss_pred CCCCceeccccEecc----------CCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceE
Confidence 222111100 00000 000257899999999866665 8876544332211 111111 112233
Q ss_pred EEEEEeCCCCCEEEEeeCCCeE
Q 013436 273 NTVCFGDESGHLIYSGSDDNLC 294 (443)
Q Consensus 273 ~~i~~~~~~~~~l~~~~~d~~i 294 (443)
+.+.|. +++.+.++. ++.+
T Consensus 185 r~l~f~-~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 185 KFLFFS-SVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEEEC-TTSCEEEEE--TTEE
T ss_pred EEEEEC-CCCcEEEEe--CCeE
Confidence 445564 777776665 6643
No 333
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.10 E-value=0.4 Score=44.79 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=61.2
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecC------CccceEEEEEECCC---CCeEEEEEC-------
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK------SLRWTVTDTSLSPD---QRHLVYASM------- 189 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~v~~i~~s~~---~~~l~~~~~------- 189 (443)
..+.++|.|+|+++++-...+.|++++..++... ...... ........|+|+|+ +..|.++..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 4679999999997777644457888886655332 111111 12345789999995 444544332
Q ss_pred ------CCeEEEEECCCCc--eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe
Q 013436 190 ------SPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (443)
Q Consensus 190 ------dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 246 (443)
...|.-++...+. ......+.. . ......| ....|+|.|||.++++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~---~----~p~~~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLA---G----LPSSKDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEE---E----ECCCSSC--CEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEE---c----CCCCCCC--CCCeEeECCCCeEEEEEC
Confidence 1345555554321 111000000 0 0011123 468899999998777654
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.09 E-value=0.42 Score=44.57 Aligned_cols=109 Identities=16% Similarity=0.235 Sum_probs=59.7
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC---CCEEEEEec-
Q 013436 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS- 247 (443)
Q Consensus 172 v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~~~~- 247 (443)
...|+|.|+|+++++-...+.|++++..++....+..+..... ..........|+|+|+ +..|+++..
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~--------~~~g~~Gllgia~~Pdf~~~g~lYv~~s~ 100 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN--------DADGQNGLLGFAFHPDFKNNPYIYISGTF 100 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC--------CTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccc--------ccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence 6789999999866654333478888765554332221111000 0001236889999995 555555442
Q ss_pred ------------CCeEEEEECCCC-------eeeE-Eeec-cCCCeEEEEEeCCCCCEEEEee
Q 013436 248 ------------DDCIYVYDLEAN-------KLSL-RILA-HTSDVNTVCFGDESGHLIYSGS 289 (443)
Q Consensus 248 ------------dg~i~iwd~~~~-------~~~~-~~~~-~~~~v~~i~~~~~~~~~l~~~~ 289 (443)
...|.-+++... +.+. .+.. .......|+|. +++.+.++.+
T Consensus 101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~-pDG~Lyv~~G 162 (454)
T 1cru_A 101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG-PDQKIYYTIG 162 (454)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC-TTSCEEEEEC
T ss_pred cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC-CCCeEEEEEC
Confidence 235666665332 1111 1221 12346889997 7787766644
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.99 E-value=0.5 Score=41.32 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=94.5
Q ss_pred ECCCCCEEEEEEC--CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECC--------------CeEEE
Q 013436 132 FSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------------PIVHI 195 (443)
Q Consensus 132 ~s~~~~~l~~g~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d--------------g~i~i 195 (443)
|+++|.+|+.... ++.|...+.+... ..++.. -.+--+++++.+|+.+... ..|+.
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~-------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN-------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE-------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC-------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 3456777776642 5667777765542 222111 1123457889988877643 36777
Q ss_pred EECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe----cCCeEEEEECCCCeeeEEeeccCCC
Q 013436 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----SDDCIYVYDLEANKLSLRILAHTSD 271 (443)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (443)
.++...+...+.. -....|+++++.|+-.. ....|+..++.... ...+..+..
T Consensus 93 i~~dg~~~~~l~~---------------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~- 149 (302)
T 3s25_A 93 IKRNGHGSTVLDP---------------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL- 149 (302)
T ss_dssp EETTSCCCEEEEC---------------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC-
T ss_pred EeCCCCcceEeec---------------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc-
Confidence 7777665433221 11236777888888776 34567777776444 444444432
Q ss_pred eEEEEEeCCCCCEEEEeeC-CCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC--CEEEEeCCC
Q 013436 272 VNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRK 347 (443)
Q Consensus 272 v~~i~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~ 347 (443)
..++ +.++.|+-.+. ...|.+.++. .......+. +... ..+.|++.+|+-...++ .|..-++..
T Consensus 150 ---~~~~-~~g~~iy~t~~g~~~Iy~~~l~----g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 ---FTCN-TSDRYFYYNNPKNGQLYRYDTA----SQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp ---CCSE-EETTEEEEECTTTCCEEEEETT----TTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred ---eEee-EECCEEEEEeCCCceEEEEECC----CCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 3444 44555554443 5678877775 333222222 2222 33568888887665433 344445544
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.80 E-value=0.9 Score=40.50 Aligned_cols=151 Identities=16% Similarity=0.133 Sum_probs=79.8
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC---CCEEEEE---
Q 013436 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAG--- 245 (443)
Q Consensus 172 v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~~--- 245 (443)
...|+|.||+.++++--..|.|++++..+++...+..+... ..........|+++|+ +..|++.
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v----------~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV----------SPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC----------CCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce----------eecCCCCceeeEeccccccCCEEEEEEec
Confidence 77899999998666654489999998665544222111100 0011226889999995 3445443
Q ss_pred ecCCeEEEEECCCC----------eeeE-Eee-ccCCCeEEEEEeCCCCCEEEEeeC-------------CCeEEEEecc
Q 013436 246 SSDDCIYVYDLEAN----------KLSL-RIL-AHTSDVNTVCFGDESGHLIYSGSD-------------DNLCKVWDRR 300 (443)
Q Consensus 246 ~~dg~i~iwd~~~~----------~~~~-~~~-~~~~~v~~i~~~~~~~~~l~~~~~-------------d~~i~iwd~~ 300 (443)
..++.|.-|.+..+ +.+. .+. .....-..|.|. +++.+.++.+. .|.|.-.+..
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 23456777766541 1111 122 111234678997 77877766542 2444444443
Q ss_pred cCCCCC----ceeeeecCCCCCeEEEEECCCCCEEEEE
Q 013436 301 CLNVKG----KPAGVLMGHLEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 301 ~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 334 (443)
...... .....-.+|. ....++|+|+|.++++-
T Consensus 183 G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 183 GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred CCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEe
Confidence 110000 0001112443 34578999988766543
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.77 E-value=1.1 Score=40.84 Aligned_cols=202 Identities=10% Similarity=0.096 Sum_probs=123.7
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceecccc
Q 013436 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 208 (443)
+.-.+|..+.||.-. ..++.|+|+++..++....... .|.-=.|-.+. .|+..+ +..|+-|++..... ...
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e----~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~--P~k 140 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD----DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ--PVK 140 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS----CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCC--CEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC----CceEEEecCCC-eEEEEc-CCeeEEecccCCCC--chh
Confidence 456778888777765 6889999999987776544433 35555664433 455444 35699999975321 111
Q ss_pred ceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-------CCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCC
Q 013436 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (443)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 281 (443)
..+.+..+ ....|..-..+++.++++..+- .|.+.+|..+.+. .+.+.+|......+... .+
T Consensus 141 vFdR~~~L---------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~-g~ 209 (494)
T 1bpo_A 141 MFDRHSSL---------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKME-GN 209 (494)
T ss_dssp EEECCGGG---------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECT-TC
T ss_pred heecchhc---------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecC-CC
Confidence 11111111 0136878888889998775432 4778999987654 56677776655544442 11
Q ss_pred ---CCEEEEeeCC---CeEEEEecccCC-----CCCceeeeecC---CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 282 ---GHLIYSGSDD---NLCKVWDRRCLN-----VKGKPAGVLMG---HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 282 ---~~~l~~~~~d---~~i~iwd~~~~~-----~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
..+++.+... +.++|.++.... ...+.+..+.. -..--.++..++....+..-+.-|.|.+||+.+
T Consensus 210 ~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleT 289 (494)
T 1bpo_A 210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (494)
T ss_dssp SSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccc
Confidence 1244444433 789999985321 11112221211 133456777888778888888999999999999
Q ss_pred CCC
Q 013436 348 MSS 350 (443)
Q Consensus 348 ~~~ 350 (443)
+.+
T Consensus 290 gt~ 292 (494)
T 1bpo_A 290 GTC 292 (494)
T ss_dssp CCE
T ss_pred cee
Confidence 543
No 338
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.77 E-value=0.36 Score=43.38 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=57.3
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCceec-cccceecccCceeeccCCCCceecEEEEEEeCC---CCEEEEEe-
Q 013436 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGS- 246 (443)
Q Consensus 172 v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~~~- 246 (443)
...|+|.|+++.|+++...|.|++++.. +.... +...... ..........++++|+ +..|+++.
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v----------~~~g~~g~~gia~~pdf~~~g~lYv~~~ 88 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDV----------WAHGQGGLLDVVLAPDFAQSRRIWLSYS 88 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCC----------CCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCccc----------ccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence 6789999999845566778999999853 32211 1111000 0001125688999996 45555443
Q ss_pred c-------CCeEEEEECCCC--e--eeEE-eec------cCCCeEEEEEeCCCCCEEEEee
Q 013436 247 S-------DDCIYVYDLEAN--K--LSLR-ILA------HTSDVNTVCFGDESGHLIYSGS 289 (443)
Q Consensus 247 ~-------dg~i~iwd~~~~--~--~~~~-~~~------~~~~v~~i~~~~~~~~~l~~~~ 289 (443)
. ...|..|++... + .... +.. .......|.|. +++.+.++.+
T Consensus 89 ~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G 148 (353)
T 2g8s_A 89 EVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD-GKGYLFIALG 148 (353)
T ss_dssp EECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC-SSSEEEEEEC
T ss_pred CCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC-CCCcEEEEEC
Confidence 2 235777776533 1 1111 111 11124579997 6776555543
No 339
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.75 E-value=1 Score=40.24 Aligned_cols=141 Identities=12% Similarity=0.134 Sum_probs=75.9
Q ss_pred CCCeEEEEECCCC--ceeccccceecccCceeeccCCCCceecEEEEEEeC--CCC-EEEEE-ec--CCeEEEEECCCC-
Q 013436 189 MSPIVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGR-ELVAG-SS--DDCIYVYDLEAN- 259 (443)
Q Consensus 189 ~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~-~l~~~-~~--dg~i~iwd~~~~- 259 (443)
.+|.|.++|..+. +... ...... . ..........+.+.+ ++. +|+++ .. +..|.+|++...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~-l~~~g~----~-----~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~ 150 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSE-LEIIGN----T-----LDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEE 150 (355)
T ss_dssp -CCEEEEEETTSSSCCEEE-CEEECS----S-----CCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTT
T ss_pred CCCeEEEEecCCCCCceEE-EEccCC----C-----CCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCC
Confidence 6889999998743 2221 111110 0 001122445566554 454 34444 33 456777776543
Q ss_pred -e--eeEEeec-cCCCeEEEEEeCCCCCEEEEee-----------------CCCeEEEEecccCCCCCceeeeecCCCCC
Q 013436 260 -K--LSLRILA-HTSDVNTVCFGDESGHLIYSGS-----------------DDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (443)
Q Consensus 260 -~--~~~~~~~-~~~~v~~i~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (443)
. .+..+.+ .-...+.+.+. +++.+.++.. ..|.|..+|. ++ +..+...-..
T Consensus 151 ~~~~~~~~~~g~~~~~pND~~v~-~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~------~~-~~~~~~~l~~ 222 (355)
T 3sre_A 151 KSLLHLKTIRHKLLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP------ND-VRVVAEGFDF 222 (355)
T ss_dssp TEEEEEEEECCTTCSSEEEEEEE-ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT------TC-CEEEEEEESS
T ss_pred CEEEEEeccccCCCCCCceEEEe-CCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC------Ce-EEEeecCCcc
Confidence 2 1222322 12457889886 6777666543 1234444443 22 2222223346
Q ss_pred eEEEEECCCCCEEEEEe-CCCCEEEEeCCC
Q 013436 319 ITFIDSRGDGRYLISNG-KDQAIKLWDIRK 347 (443)
Q Consensus 319 v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 347 (443)
-+.++|+||++.|..+. ..+.|..|++..
T Consensus 223 pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 223 ANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 78999999998776554 578899999864
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.63 E-value=0.27 Score=44.17 Aligned_cols=191 Identities=11% Similarity=0.067 Sum_probs=95.1
Q ss_pred CCCEEEEEEC-C---------CeEEEEECCCCeEEEEeeecC-CccceEEEEEECCCCCeEEEEECC-------------
Q 013436 135 DGSLFVAGFQ-A---------SQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMS------------- 190 (443)
Q Consensus 135 ~~~~l~~g~~-d---------~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~~~~~d------------- 190 (443)
++++++.|+. + ..+.+||..+..-... .... .......++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~ 141 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL-MSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNE 141 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEEC-SCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEEC-CCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhh
Confidence 5677777765 2 4589999988743322 1111 1122222233 467788888764
Q ss_pred --------------------------CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEE
Q 013436 191 --------------------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (443)
Q Consensus 191 --------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 244 (443)
..+.+||+.+.+........... . .-.+++.. ++++++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~------------~--~~~~~~~~-~~~iyv~ 206 (357)
T 2uvk_A 142 AGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYG------------T--AGAAVVNK-GDKTWLI 206 (357)
T ss_dssp HTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCC------------C--BSCEEEEE-TTEEEEE
T ss_pred cCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCC------------c--ccccEEEE-CCEEEEE
Confidence 57899999888765442211100 0 00122222 5666777
Q ss_pred Eec------CCeEEEEEC--CCCeeeE--EeeccCCCeE-EEEEeCCCCCEEEEeeCC----------------------
Q 013436 245 GSS------DDCIYVYDL--EANKLSL--RILAHTSDVN-TVCFGDESGHLIYSGSDD---------------------- 291 (443)
Q Consensus 245 ~~~------dg~i~iwd~--~~~~~~~--~~~~~~~~v~-~i~~~~~~~~~l~~~~~d---------------------- 291 (443)
|+. ...+.+||+ .+.+-.. .+........ +++. .++.+++.|+.+
T Consensus 207 GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~ 284 (357)
T 2uvk_A 207 NGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI--SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKS 284 (357)
T ss_dssp CCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE--ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCE
T ss_pred eeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE--ECCEEEEEcCccccCCcccccccceeccccccce
Confidence 653 345788887 4443221 1111111111 2333 346677777632
Q ss_pred CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCC------CEEEEeCCCCC
Q 013436 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ------AIKLWDIRKMS 349 (443)
Q Consensus 292 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg------~i~iwd~~~~~ 349 (443)
..+.+||+... ....+..+......-.++.+ ++++++.|+.++ .|.++++++.+
T Consensus 285 ~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 285 YSTDIHLWHNG--KWDKSGELSQGRAYGVSLPW--NNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp ECCEEEECC-----CEEEEECSSCCBSSEEEEE--TTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred eeEEEEecCCC--ceeeCCCCCCCcccceeEEe--CCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 24778888732 22333333322222223333 677888888642 35566877744
No 341
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.57 E-value=2.2 Score=42.72 Aligned_cols=195 Identities=14% Similarity=0.160 Sum_probs=111.1
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCce
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 203 (443)
...|.++.-..+|. |..|+.+| +..||..+..... ........|.++.. .++ .|..++.+ -|..+|..+++.
T Consensus 62 ~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~ 133 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL 133 (758)
T ss_dssp SSCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE
T ss_pred CceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE
Confidence 45688888877764 55566554 8899988763221 11112234776654 344 56667766 578889877654
Q ss_pred eccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEe-ec----cCCCeEEEEEe
Q 013436 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LA----HTSDVNTVCFG 278 (443)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~----~~~~v~~i~~~ 278 (443)
........ + -....|.++....++.+.+ |+..| |..+|..+++..... .. ....|.++...
T Consensus 134 ~~~~~~~~---~---------l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 199 (758)
T 3ott_A 134 TSFDTRRN---G---------LPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLED 199 (758)
T ss_dssp EEECHHHH---C---------CSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEE
T ss_pred EEeccCCC---C---------cCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEE
Confidence 33211100 0 0112588888877777544 55554 888998776533211 11 12247888774
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
.++..|..|+. +-+..+|.. ..+...........|.++...++|.+.+.. .+ -+.+++..+.
T Consensus 200 -~~~~~lWigt~-~Gl~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 200 -TTRQCVWIGTE-GYLFQYFPS----TGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTT 261 (758)
T ss_dssp -TTTTEEEEEEE-EEEEEEETT----TTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTS
T ss_pred -CCCCEEEEEEC-CCCeEEcCC----CCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCC
Confidence 55554445554 457788875 332221111123458888888888765544 44 4777876553
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.09 E-value=0.84 Score=45.24 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=83.3
Q ss_pred CCCEEEEEECC------CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCC--eEEEEECCCCceecc
Q 013436 135 DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGTMESL 206 (443)
Q Consensus 135 ~~~~l~~g~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~ 206 (443)
++++++.|+.+ +.+.+||..+..... ..........-. ++.-.+++.++.|+.++ .+.+||..+......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~-~~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSM-IKSLSHTRFRHS-ACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEE-CCCCSBCCBSCE-EEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEE-CCCCCCCcccce-EEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 77888888754 358899998863322 111221111122 22324788888887655 699999998876544
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEeCC-CCEEEEEec--C-----CeEEEEECCCCee-----eEEeec--cCCC
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS--D-----DCIYVYDLEANKL-----SLRILA--HTSD 271 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~--~~~~ 271 (443)
........ ... ....+.+..+ ++.++.|+. + ..+.+||+.+.+. -..+.. ....
T Consensus 529 ~~~g~~p~-------~r~----~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R 597 (695)
T 2zwa_A 529 TPKDEFFQ-------NSL----VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR 597 (695)
T ss_dssp CCSSGGGG-------SCC----BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC
T ss_pred cCCCCCCC-------ccc----ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc
Confidence 32111100 011 1223445554 667777765 2 4699999988761 112211 1111
Q ss_pred -eEEEEEeCCCCCEEEEeeCC--------CeEEEEecc
Q 013436 272 -VNTVCFGDESGHLIYSGSDD--------NLCKVWDRR 300 (443)
Q Consensus 272 -v~~i~~~~~~~~~l~~~~~d--------~~i~iwd~~ 300 (443)
-.+++.. .++.+++.|+.+ ..+.+||+.
T Consensus 598 ~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 598 YGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp BSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 1122332 336777777743 468899987
No 343
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.97 E-value=2.7 Score=44.60 Aligned_cols=204 Identities=11% Similarity=0.075 Sum_probs=116.8
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCc-eeccc
Q 013436 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT-MESLA 207 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 207 (443)
+.-.+|..+.+|.-. ..++.|+|+++..++..... ..+|.-=.|-.+. .|+..+. ..|..|++.... ....+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~----~e~VvfWkWis~~-~l~lVT~-~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhccccc----CCCceEEEecCCC-eeEEEcC-CeEEEeccCCCCccHHHH
Confidence 445678788777664 67899999998765554332 2246666665443 3444433 469999996522 11111
Q ss_pred cceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEe-------cCCeEEEEECCCCeeeEEeeccCCCeEEEEEe--
Q 013436 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFG-- 278 (443)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-- 278 (443)
..+..+ ....|..-..+++.++++..+ -.|.+.+|.++.+. .+.+.+|......+...
T Consensus 143 ---dR~~~L---------~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~ 209 (1630)
T 1xi4_A 143 ---DRHSSL---------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGN 209 (1630)
T ss_pred ---hcchhc---------ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCC
Confidence 111111 023677778888888877543 34889999987653 44555665544433331
Q ss_pred CCCCCEEEEeeC---CCeEEEEecccC-C----CCCceeeeecCC---CCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 279 DESGHLIYSGSD---DNLCKVWDRRCL-N----VKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 279 ~~~~~~l~~~~~---d~~i~iwd~~~~-~----~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+....+++.+.. .+.++|.++... . ...+.+..+... ..-..++..++....+...+.-|.|.++|+.+
T Consensus 210 ~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t 289 (1630)
T 1xi4_A 210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (1630)
T ss_pred CCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc
Confidence 111223333322 268999888532 0 011111111111 22234566777767777888899999999999
Q ss_pred CCCcc
Q 013436 348 MSSNA 352 (443)
Q Consensus 348 ~~~~~ 352 (443)
+.++.
T Consensus 290 ~~~i~ 294 (1630)
T 1xi4_A 290 GTCIY 294 (1630)
T ss_pred chhhh
Confidence 76543
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.58 E-value=2.1 Score=37.28 Aligned_cols=176 Identities=11% Similarity=0.012 Sum_probs=97.9
Q ss_pred EEEECCCCCEEEEEECC--------------CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE--CCC-
Q 013436 129 VSQFSADGSLFVAGFQA--------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--MSP- 191 (443)
Q Consensus 129 ~~~~s~~~~~l~~g~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~--~dg- 191 (443)
+--++++|.+|+-.... ..|+..+++.+.... .... .+..|+++++.|+... .++
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~---l~~~-----~~~~~s~~g~~Iy~~~~~~~~~ 128 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV---LDPD-----PCIYASLIGNYIYYLHYDTQTA 128 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE---EECS-----CEEEEEEETTEEEEEEESSSSC
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE---eecC-----CccEEEEeCCEEEEEeecCCCC
Confidence 44578899988877543 357777887763221 1111 1236778999888776 333
Q ss_pred -eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-CCeEEEEECCCCeeeEEeeccC
Q 013436 192 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHT 269 (443)
Q Consensus 192 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~ 269 (443)
.|...++.......+... .+ ..++|+++.|+..+. ...|++.++..+.....+.
T Consensus 129 ~~Iy~~~~dGs~~~~lt~~-------------------~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--- 184 (302)
T 3s25_A 129 TSLYRIRIDGEEKKKIKNH-------------------YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--- 184 (302)
T ss_dssp EEEEEEETTSCCCEEEESS-------------------CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---
T ss_pred ceEEEEECCCCCeEEEeCC-------------------Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---
Confidence 566666654433222210 11 345677888886665 5779999987766443332
Q ss_pred CCeEEEEEeCCCCCEEEEeeCC--CeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeC--CCCEEEEeC
Q 013436 270 SDVNTVCFGDESGHLIYSGSDD--NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK--DQAIKLWDI 345 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~ 345 (443)
+... ..+. |.+.+|+-...+ ..|..-++. +.....+.. ..+. .|+|++.+|.-+.. .+.|..-++
T Consensus 185 ~~~~-~~~~-P~g~~iy~t~~~~~~~I~~~~ld-----G~~~~~Lt~--~~~~--~~~~~g~~Iy~~~~~~~~~i~~~~~ 253 (302)
T 3s25_A 185 CNCY-KPVV-LDDTNVYYMDVNRDNAIVHVNIN-----NPNPVVLTE--ANIE--HYNVYGSLIFYQRGGDNPALCVVKN 253 (302)
T ss_dssp SCEE-EEEE-EETTEEEEEEGGGTTEEEEECSS-----SCCCEECSC--SCEE--EEEEETTEEEEEECSSSCEEEEEET
T ss_pred CCcc-ceee-ecCCEEEEEEcCCCcEEEEEECC-----CCCeEEEeC--CCcc--eEEECCCEEEEEECCCCcEEEEEEC
Confidence 2232 3355 555566555433 355555553 333344432 2333 37778888875533 344555555
Q ss_pred CC
Q 013436 346 RK 347 (443)
Q Consensus 346 ~~ 347 (443)
..
T Consensus 254 DG 255 (302)
T 3s25_A 254 DG 255 (302)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.49 E-value=2.5 Score=37.64 Aligned_cols=215 Identities=12% Similarity=0.056 Sum_probs=108.3
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEee---ecCCccceEEEEEECCC---CCeEEEE-E--CCCeEE
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI---LAKSLRWTVTDTSLSPD---QRHLVYA-S--MSPIVH 194 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~v~~i~~s~~---~~~l~~~-~--~dg~i~ 194 (443)
-...+.++|.|||+++++--..|.|++++..++....... ...........|+++|+ +..|.+. + .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 3457899999999977776548999999876654321110 11122345889999996 3444332 2 345566
Q ss_pred EEECCCCcee--ccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec-------------CCeEEEEECCCC
Q 013436 195 IVDVGSGTME--SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLEAN 259 (443)
Q Consensus 195 iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-------------dg~i~iwd~~~~ 259 (443)
-|.+..+... ........... ......| ....|.|.|||.++++.+. .|.|.-.+....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~----~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRG----IPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEE----ECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred EEEeCCCCcccccCCCcEEEEEc----CCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 6666542210 00000000000 0011223 3457999999987776542 355666665432
Q ss_pred e-------eeEEee-ccCCCeEEEEEeCCCCCEEEEe-eCCCeEEEEecccCCC--------------CCceeeeecCCC
Q 013436 260 K-------LSLRIL-AHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNV--------------KGKPAGVLMGHL 316 (443)
Q Consensus 260 ~-------~~~~~~-~~~~~v~~i~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~ 316 (443)
- ....+. +|. ....++|. +++.++++- +.|+.-.|--+..... ...++..+..+.
T Consensus 185 ip~~nPf~~~~i~a~G~R-Np~Gla~d-p~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHR-NVQGLAWD-DKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp BCTTCSSTTCCEEEBCCS-BCCEEEEC-TTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred ccCCCCCCCCeEEeeCCC-CcceEEEC-CCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence 0 011121 343 45688997 467766543 2333222222221100 011233333232
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 317 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.....++|. ++..++..-..+.|....+..
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~ 292 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKG 292 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEET
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecC
Confidence 355677776 455555555556665555543
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.90 E-value=6.5 Score=37.26 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=57.8
Q ss_pred EEEEECCCeEEEEECCCCeEEEEeeecCCcc----------------------ceE--EEEEEC---CCCCeEEEEE-CC
Q 013436 139 FVAGFQASQIRIYDVERGWKIQKDILAKSLR----------------------WTV--TDTSLS---PDQRHLVYAS-MS 190 (443)
Q Consensus 139 l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~----------------------~~v--~~i~~s---~~~~~l~~~~-~d 190 (443)
|.+|+..|.|+|+-+.+++.+..+-...... +.. ..+++. .||++|..-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 7788899999999999887765543221100 000 112222 2567777766 45
Q ss_pred CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEe--CCCCEEEEEec
Q 013436 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSS 247 (443)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~l~~~~~ 247 (443)
..|-..++...++..+..+.... .+..+.|- |+..+++.+++
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~---------------~~Hg~~~~~~p~T~yv~~~~e 196 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQ---------------AIHGLRLQKVPHTKYVFANAE 196 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCS---------------CEEEEEECCSSBCCEEEEEEC
T ss_pred cceEEEECCcEeeceeEeCCCCc---------------CcccccccccCCccEEEecce
Confidence 57777888877776665544332 56667775 56677777654
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.56 E-value=6.1 Score=33.94 Aligned_cols=183 Identities=13% Similarity=0.024 Sum_probs=96.6
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceec
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (443)
.|..++...+...++ . ||.|..|-......+.. .......|..++...+. .+.-. +|.|+.|-........
T Consensus 64 ~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~---P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg 134 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTV---PAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTT 134 (282)
T ss_dssp CCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCC---CGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTS
T ss_pred CEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCC---CcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCC
Confidence 566666654433333 4 89999997654211111 11112357777765443 33344 9999999865432221
Q ss_pred cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEE
Q 013436 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 285 (443)
.... ....|..++...+.. +.-. +|.|+.|-......+..-......|..++.. ....+
T Consensus 135 ~~~~----------------~~~~i~~i~~G~~~~--~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G--~~hs~ 193 (282)
T 3qhy_B 135 VPAE----------------AQSGVTALDGGVYTA--LAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGG--IFHSL 193 (282)
T ss_dssp CCGG----------------GGSSEEEEEECSSEE--EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE
T ss_pred CCcc----------------CCCCeEEEEcccCEE--EEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEec--CCEEE
Confidence 1100 011566666543332 2233 7999999765432221111123567777663 33344
Q ss_pred EEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 286 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+. .||.|..|-.......+.+.. ....|..++..... .++.. ||.|..|-...
T Consensus 194 al--~~G~v~~wG~n~~gqlg~p~~----~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 194 AL--KDGKVIAWGDNRYKQTTVPTE----ALSGVSAIASGEWY-SLALK--NGKVIAWGSSR 246 (282)
T ss_dssp EE--ETTEEEEEECCTTSTTCCCGG----GGSSCCEEEECSSC-EEEEE--TTEEEEESTTC
T ss_pred EE--ECCeEEEEECCCCCCCCCCcc----cCCCceEEEcCCCE-EEEEE--CCEEEEecCCC
Confidence 44 599999998763322222221 22457777765433 33333 99999997665
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=86.66 E-value=14 Score=31.56 Aligned_cols=184 Identities=9% Similarity=-0.006 Sum_probs=96.6
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceec
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (443)
.|..++....-. ++. . ||.|..|-......+.. .......|..++...+.. ++. . ||.|..|-........
T Consensus 25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~---p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTM---PAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSC---CGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCC---CccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCC
Confidence 455666554322 333 4 88899987554211111 111122476777654433 333 4 8999999866432221
Q ss_pred cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeeccCCCeEEEEEeCCCCCEE
Q 013436 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 285 (443)
.... -...|..++...+. .+.-. +|.|+.|-......+-.-......|..++.. ....+
T Consensus 96 ~P~~----------------~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G--~~~~~ 154 (282)
T 3qhy_B 96 VPAE----------------ARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL 154 (282)
T ss_dssp CCGG----------------GSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE
T ss_pred CCcc----------------cCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc--cCEEE
Confidence 1100 01157777766443 33344 8999999765432221111234567777663 22333
Q ss_pred EEeeCCCeEEEEecccCCCCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 286 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
+ -. ||.|..|-.......+.+. .....|..++...+. .++. .||.|..|-....
T Consensus 155 ~-l~-~G~v~~wG~n~~gqlg~p~----~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 155 A-VK-NGGVIAWGDNYFGQTTVPA----EAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRY 208 (282)
T ss_dssp E-EE-TTEEEEEECCTTSTTSCCG----GGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTT
T ss_pred E-EE-CCEEEEecCCCCCCCCCce----ecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCC
Confidence 3 33 7999999876322222111 123567888765432 3333 5999999976653
No 349
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=84.63 E-value=22 Score=31.92 Aligned_cols=206 Identities=13% Similarity=0.204 Sum_probs=112.7
Q ss_pred CceEEEEECCCCCEEEE--EE-------------CCCeEEEEECCCC--eEEEEeeecCC---ccceEEEEEEC---CC-
Q 013436 125 SRAYVSQFSADGSLFVA--GF-------------QASQIRIYDVERG--WKIQKDILAKS---LRWTVTDTSLS---PD- 180 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~--g~-------------~d~~i~iwd~~~~--~~~~~~~~~~~---~~~~v~~i~~s---~~- 180 (443)
-.|..+...+.+++-+. |- ..-.|.+||+.++ +.++....... ....+..+++. |+
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 35778888877765443 21 1125889999998 77766554321 23457778776 22
Q ss_pred ---CCeEEEEE-CCCeEEEEECCCCceeccccceeccc-CceeeccCCCCc----eecEEEEEEeCC----CCEEEEEec
Q 013436 181 ---QRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHD-GLDFSAADDGGY----SFGIFSLKFSTD----GRELVAGSS 247 (443)
Q Consensus 181 ---~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~i~~l~~~~~----~~~l~~~~~ 247 (443)
+.+...+. ..+-|.++|+.+++..++....-..+ ...+.. .|. ...|..|+++|+ ++.|+...-
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i---~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl 243 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDY---GGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG 243 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEE---TTEEEEECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEE---CCEEeEeccCceEEEecCCcCCCCeEEEEEEC
Confidence 23333333 45689999999988765542111111 001111 122 237999999998 777777665
Q ss_pred CC-eEEEEE---CCCC---eeeEEeeccC---CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec--CC
Q 013436 248 DD-CIYVYD---LEAN---KLSLRILAHT---SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GH 315 (443)
Q Consensus 248 dg-~i~iwd---~~~~---~~~~~~~~~~---~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~ 315 (443)
.+ .++-.. ++.. ..++.+ +.. ..-..+++.+.+|.++++--....|..|+.............+. ..
T Consensus 244 ss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~ 322 (381)
T 3q6k_A 244 SAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSR 322 (381)
T ss_dssp SCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTT
T ss_pred CCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCC
Confidence 54 333332 2221 112222 222 23344566336787777777888999999862000111122221 12
Q ss_pred CCCeEEEEECCCCCEEEEE
Q 013436 316 LEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 316 ~~~v~~~~~~~~~~~l~s~ 334 (443)
-.....+.+.++|.+.+.+
T Consensus 323 l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 323 FVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CCSEEEEEECTTSCEEEEE
T ss_pred ccccCeEEECCCCeEEEEE
Confidence 2346777777666655544
No 350
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=83.71 E-value=37 Score=33.76 Aligned_cols=196 Identities=9% Similarity=0.007 Sum_probs=107.7
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceec
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (443)
.|.++...+++..|..|.. +-+..+|..++.... .... ....|.++...+++.+ ..|+.+ -+.+++..++....
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l--~~~~i~~i~~d~~g~l-WigT~~-Gl~~~~~~~~~~~~ 265 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAF--HNNSIKSLALDGNGDL-LAGTDN-GLYVYHNDTTPLQH 265 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEE--EEEEEEEEEECTTCCE-EEEETT-EEEEECCTTSCCEE
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCC--CCCeEEEEEEcCCCCE-EEEeCC-ceeEEecCCCcEEE
Confidence 4888888887775555654 458889988764322 1111 1235888888777764 445554 47788877654432
Q ss_pred cccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee-------ccCCCeEEEEEe
Q 013436 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFG 278 (443)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~i~~~ 278 (443)
......... .-....|.++....+|. |-.|+..| +.++... .. ...+. .....|.++.-.
T Consensus 266 ~~~~~~~~~---------~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D 332 (758)
T 3ott_A 266 IIHDSRNIQ---------SLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRD 332 (758)
T ss_dssp ECCCTTCTT---------SCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEEC
T ss_pred EEcCCCCcC---------cCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEc
Confidence 211100000 00122688888887776 55555667 5554432 21 11111 112457888773
Q ss_pred CCCCCEEEEeeCCCeEEEEecccCCCCCceeeeec-------CCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 279 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.++.+.+ |+.+| +..++..... ......+. .....|.++.-..+|++.+ |+ ++-+..||..+
T Consensus 333 -~~g~lWi-Gt~~G-l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~ 401 (758)
T 3ott_A 333 -SKGFYWF-GGANG-LIRFTDPAGE--RHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYAT 401 (758)
T ss_dssp -TTCCEEE-EETTE-EEEESCTTSS--CCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTT
T ss_pred -CCCCEEE-eeCCc-ceeecccccc--cceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCC
Confidence 6666554 45554 5566654110 01111111 1124688888888887555 44 34688999876
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.27 E-value=31 Score=35.48 Aligned_cols=39 Identities=8% Similarity=0.030 Sum_probs=33.7
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEee
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 163 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~ 163 (443)
..+.+++..++..++++-+.|+++|+|++.++.++....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 457888888899999999999999999999998776543
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.87 E-value=30 Score=32.10 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=60.1
Q ss_pred EEEEEECCCCC-eEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC----CCEEEEEe
Q 013436 172 VTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGS 246 (443)
Q Consensus 172 v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~----~~~l~~~~ 246 (443)
...|+|.||+. .|+++...|.|++++........ .+...... +......+.......|+|+|+ +.+.++-+
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~--~~~~~~~~--~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKE--PYLDIHKL--VQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSS--CSEECTTT--BCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeee--eecCCcce--eccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 67899999996 56667889999999754321110 01111000 000000012346889999996 44333322
Q ss_pred cC------------CeEEEEECCC----------CeeeEEee--ccCCCeEEEEEeCCCCCEEEEeeCC
Q 013436 247 SD------------DCIYVYDLEA----------NKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDD 291 (443)
Q Consensus 247 ~d------------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d 291 (443)
.+ ..|.-|.+.. .+.+..+. ........|.|. +++.+.++.+..
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg-pDG~LYv~~Gd~ 159 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG-PDGFLYIILGDG 159 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC-TTSCEEEEECCT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC-CCCcEEEEeCCC
Confidence 21 1455565542 12333332 112346789997 778776665543
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.18 E-value=29 Score=35.75 Aligned_cols=38 Identities=32% Similarity=0.210 Sum_probs=33.5
Q ss_pred cEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEee
Q 013436 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (443)
Q Consensus 229 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 266 (443)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56778888888999999999999999999999887754
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=82.15 E-value=35 Score=32.43 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=50.5
Q ss_pred CCeEEEEEeCCCCCEEEEee-CCCeEEEEecccCC---------CCCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCC
Q 013436 270 SDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLN---------VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 339 (443)
.....+.++ |+|+++++++ .+.++.++|++... .......... -.-.....+|.++|....+.--|..
T Consensus 323 ksPHGv~vs-PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTS-SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEEC-TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCcceeeC-CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecce
Confidence 344567776 7777766654 67899999987321 0111122222 3346678899999966666668999
Q ss_pred EEEEeCCC
Q 013436 340 IKLWDIRK 347 (443)
Q Consensus 340 i~iwd~~~ 347 (443)
|.-|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999875
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=78.97 E-value=36 Score=30.53 Aligned_cols=190 Identities=10% Similarity=0.024 Sum_probs=85.7
Q ss_pred CEEEEEECCCeEEEEECCC-CeEEEEeeecCCccceEEEEEECC-CCCeEEEEECCC----eEEEEECCCCceeccccce
Q 013436 137 SLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSP----IVHIVDVGSGTMESLANVT 210 (443)
Q Consensus 137 ~~l~~g~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~ 210 (443)
..|.+|...| +.+++... +......... .....|.+|++.| +...|.+++..| .|... ...++.-......
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCcc
Confidence 4577777766 55555432 2112111111 1234699999998 333454554444 33332 2223221111110
Q ss_pred ecccCceeeccCCCC----ceecEEEEEEeC-C-CCEEEEEecCCeEEEEECCCCeeeEEeec-----------------
Q 013436 211 EIHDGLDFSAADDGG----YSFGIFSLKFST-D-GRELVAGSSDDCIYVYDLEANKLSLRILA----------------- 267 (443)
Q Consensus 211 ~~~~~~~~~~~~~~~----~~~~i~~l~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------- 267 (443)
. .+.. .... ....|.++++.| + ...+.++...+.|+..+- .++.-..+..
T Consensus 100 ~-----~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g 172 (394)
T 3b7f_A 100 P-----AFNK-APEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDG 172 (394)
T ss_dssp C-----CCCC-CC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC---
T ss_pred c-----cCCC-cccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccC
Confidence 0 0000 0000 112588899987 2 455666666666665542 2222122211
Q ss_pred --cCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCceeee-ecC-C--------CCCeEEEEECCC-CCEEEEE
Q 013436 268 --HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMG-H--------LEGITFIDSRGD-GRYLISN 334 (443)
Q Consensus 268 --~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~-~--------~~~v~~~~~~~~-~~~l~s~ 334 (443)
....+.+|.+.|.+...++.+..++.|...+- ...+.+.+.. ... + ...+.++.++|. ...|..+
T Consensus 173 ~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D--gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg 250 (394)
T 3b7f_A 173 TPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD--AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQ 250 (394)
T ss_dssp -CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS--TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEE
T ss_pred CCCCCceeEEEECCCCCCEEEEEECCCCEEEECC--CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEE
Confidence 12357788887545555555554444443321 1111111110 000 0 134889999985 3556666
Q ss_pred eCCC
Q 013436 335 GKDQ 338 (443)
Q Consensus 335 ~~dg 338 (443)
...+
T Consensus 251 ~~~g 254 (394)
T 3b7f_A 251 NHCG 254 (394)
T ss_dssp ETTE
T ss_pred cCCe
Confidence 5544
No 356
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=78.53 E-value=34 Score=29.99 Aligned_cols=209 Identities=10% Similarity=0.013 Sum_probs=110.7
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEE---CCC------CeEEEEeeecCCccceEEEE-EECC--CCCeEEEEECCCeE
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYD---VER------GWKIQKDILAKSLRWTVTDT-SLSP--DQRHLVYASMSPIV 193 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd---~~~------~~~~~~~~~~~~~~~~v~~i-~~s~--~~~~l~~~~~dg~i 193 (443)
.+..+........|+.-+..|.++-.. +.. |..+.....+... ..|.++ .... +..++++++.+|.|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~-e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPE-ERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTT-CCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCC-CEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 344444444455566555667655444 322 2222222222222 234444 4442 57799999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC--CC---------eee
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--AN---------KLS 262 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~--~~---------~~~ 262 (443)
+-..+..-...... ....+.+. . ...+..+........|+..+..|.+..+.+. .- ...
T Consensus 122 Kr~~l~~~~~~~r~----G~~~i~lk-----e-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~ 191 (327)
T 3uc1_A 122 KKSKLTDFDSNRSG----GIVAVNLR-----D-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQG 191 (327)
T ss_dssp EEEEGGGGCCCCSS----CEESCBCC-----T-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEES
T ss_pred EEeEHHHhhccccC----ceEEEEEC-----C-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeee
Confidence 98886543211100 00000000 0 1145555555556678888899999888776 21 111
Q ss_pred EEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCC---Cceee--eecCCCCCeEEEEECCCCCEEEEEeCC
Q 013436 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK---GKPAG--VLMGHLEGITFIDSRGDGRYLISNGKD 337 (443)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d 337 (443)
..+ .....|.++... ..+..++..+..|.++.-.+...... +.-+. .+......+..+....+...++..+.+
T Consensus 192 i~L-~~~d~Vv~~~~~-~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~ 269 (327)
T 3uc1_A 192 MRF-NIDDRLLSLNVV-REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSG 269 (327)
T ss_dssp SCC-CTTCCEEEEEEC-CTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGG
T ss_pred ecC-CCCCEEEEEEEE-CCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCC
Confidence 122 234557777665 44567888999999998887643211 11122 222212345444443344566666778
Q ss_pred CCEEEEeCCC
Q 013436 338 QAIKLWDIRK 347 (443)
Q Consensus 338 g~i~iwd~~~ 347 (443)
|.+.-++...
T Consensus 270 G~~ir~~~~~ 279 (327)
T 3uc1_A 270 GGVIRTAARQ 279 (327)
T ss_dssp GCEEEEEGGG
T ss_pred CeEEEEehhh
Confidence 8887777655
No 357
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=77.81 E-value=39 Score=30.30 Aligned_cols=166 Identities=8% Similarity=-0.018 Sum_probs=75.9
Q ss_pred CCceEEEEECC--CCCEEEEEECCC----eEEEEECCCCeEEEEeeec---CC--------ccceEEEEEECCC--CCeE
Q 013436 124 TSRAYVSQFSA--DGSLFVAGFQAS----QIRIYDVERGWKIQKDILA---KS--------LRWTVTDTSLSPD--QRHL 184 (443)
Q Consensus 124 ~~~v~~~~~s~--~~~~l~~g~~d~----~i~iwd~~~~~~~~~~~~~---~~--------~~~~v~~i~~s~~--~~~l 184 (443)
...|.++++.| ++.+++.+ ..| .|... .+.+......... .. ....|.++++.|. ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 45699999999 55555544 444 34332 2333222221111 00 1125888999872 4556
Q ss_pred EEEECCCeEEEEECCCCceeccccceecccCceeecc--CCCCceecEEEEEEeCC-CCEEEEEecCCeEEEEECCCCee
Q 013436 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKL 261 (443)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 261 (443)
.++...+.|...+-...................+... ........+.+|.+.|. ...++++..++.|+..+- .++.
T Consensus 132 ~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t 210 (394)
T 3b7f_A 132 YAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD 210 (394)
T ss_dssp EEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred EEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence 6666556554432222222221110000000000000 00011236888999883 445566655555554432 2222
Q ss_pred eEEeec-----c--------CCCeEEEEEeCCCCCEEEEeeCCC
Q 013436 262 SLRILA-----H--------TSDVNTVCFGDESGHLIYSGSDDN 292 (443)
Q Consensus 262 ~~~~~~-----~--------~~~v~~i~~~~~~~~~l~~~~~d~ 292 (443)
-..+.. + ...+.+|.+.|.++..|+.+...+
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 222211 0 124788999765567777776654
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.58 E-value=62 Score=31.97 Aligned_cols=204 Identities=9% Similarity=0.005 Sum_probs=99.5
Q ss_pred ceEEEE-ECCCCCEEEEEECC-----CeEEEEECCCCeEEEEeeecCCcc-----ceEEEEEECCCCCeEEEEE------
Q 013436 126 RAYVSQ-FSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLR-----WTVTDTSLSPDQRHLVYAS------ 188 (443)
Q Consensus 126 ~v~~~~-~s~~~~~l~~g~~d-----~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~i~~s~~~~~l~~~~------ 188 (443)
....+. ++|++++++.+-+. ..|+++|+.+++.+...+...... .....++|..++ -+..+.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~ 208 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTC
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCC
Confidence 344555 89999988765432 359999999986553222200000 011335776333 344332
Q ss_pred -----CCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCE-----EEEEe---cCCeEEEEE
Q 013436 189 -----MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-----LVAGS---SDDCIYVYD 255 (443)
Q Consensus 189 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-----l~~~~---~dg~i~iwd 255 (443)
....|+.|.+.+.......-...... . --.....++++++ +++.+ ....+++.|
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~------------~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 275 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKE------------Y-IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILD 275 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTT------------S-CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEE
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCC------------c-eEEEEEEecCCCceEEEEEEEEecccCceeEEEEc
Confidence 12368888877653322111111111 0 1123445556652 33333 124577777
Q ss_pred CCC--CeeeEEeeccCCCeEEEEEeCCCCCEEEEe----------eCCCeEEEEecccCCCC---Cceeee-ec-CCCCC
Q 013436 256 LEA--NKLSLRILAHTSDVNTVCFGDESGHLIYSG----------SDDNLCKVWDRRCLNVK---GKPAGV-LM-GHLEG 318 (443)
Q Consensus 256 ~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~----------~~d~~i~iwd~~~~~~~---~~~~~~-~~-~~~~~ 318 (443)
+.. ++ ...+..... ..+..+ .++.+++.. ...+.|...|+...... ...... +. .....
T Consensus 276 ~~~~~~~-~~~l~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (711)
T 4hvt_A 276 TKYKNLK-LQKINMPSD--ATLQGS-FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEV 351 (711)
T ss_dssp CSSSSCE-EEECCSCTT--CEEEEE-ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEE
T ss_pred CCCCCCc-ceEeecCCc--ceEeee-ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCe
Confidence 653 33 233322221 122222 344444432 14667888888742110 111222 22 23346
Q ss_pred eEEEEECCCCCEEEEEeCCCC--EEEEeCCCC
Q 013436 319 ITFIDSRGDGRYLISNGKDQA--IKLWDIRKM 348 (443)
Q Consensus 319 v~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~ 348 (443)
+..+.|..+ .++++...++. |.++|+.+.
T Consensus 352 l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 352 FNFISTTKD-RVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp EEEEEECSS-CEEEEEEETTEEEEEEECEETT
T ss_pred EEEEEEECC-EEEEEEEECCEEEEEEEECCCC
Confidence 778888865 56666666664 667776543
No 359
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=70.55 E-value=49 Score=32.49 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=29.4
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccc
Q 013436 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 209 (443)
.|.++.+ +..++++-+.|.++|+|++.++++......
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665554 477999999999999999999987665554
No 360
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=68.90 E-value=47 Score=32.60 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=30.1
Q ss_pred cEEEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEeec
Q 013436 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (443)
Q Consensus 229 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 267 (443)
.|.++.+ +..++++-+.|..+++||+.+++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 477999999999999999999998877653
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=68.86 E-value=65 Score=28.88 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=53.6
Q ss_pred eEEEEECCCC--eeeEEeec------cCCCeEEEEEe-C-CC----CCEEEEe-eCCCeEEEEecccCCCCCceeeeec-
Q 013436 250 CIYVYDLEAN--KLSLRILA------HTSDVNTVCFG-D-ES----GHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLM- 313 (443)
Q Consensus 250 ~i~iwd~~~~--~~~~~~~~------~~~~v~~i~~~-~-~~----~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~- 313 (443)
.|.+||+.++ +.++++.- ..+.+..+.+. - +. +.+++.. +....|.|+|+. +++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~----~~~swRv~~~ 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK----KQDSWNVTHP 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT----TTEEEEEECG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC----CCcEEEEccC
Confidence 5778888888 77776642 23457778774 1 11 2343433 346789999998 433333221
Q ss_pred -------------CC----CCCeEEEEECCC----CCEEEEEeCCCCEEEEeCC
Q 013436 314 -------------GH----LEGITFIDSRGD----GRYLISNGKDQAIKLWDIR 346 (443)
Q Consensus 314 -------------~~----~~~v~~~~~~~~----~~~l~s~~~dg~i~iwd~~ 346 (443)
+. ...|..|+++|+ ++.|.-....+ -++|.+.
T Consensus 200 ~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~ 252 (381)
T 3q6k_A 200 TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVN 252 (381)
T ss_dssp GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEE
T ss_pred CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEE
Confidence 11 246788888887 66666554433 3455443
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.77 E-value=63 Score=28.27 Aligned_cols=168 Identities=12% Similarity=0.061 Sum_probs=92.4
Q ss_pred CceEEE-EECC--CCCEEEEEECCCeEEEEECCCCeEE----EEeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEE
Q 013436 125 SRAYVS-QFSA--DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (443)
Q Consensus 125 ~~v~~~-~~s~--~~~~l~~g~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd 197 (443)
..|..+ .... +..++++.+.+|.|+--.+..-... .....+... ..+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 344444 4442 5789999999999999886542110 111122222 3355554445566788889999988888
Q ss_pred CCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-------eeeE--Eeecc
Q 013436 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-------KLSL--RILAH 268 (443)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~--~~~~~ 268 (443)
....+....-........+.+. ....|.++...+++..++..+..|.++.-.+..- +-+. .+...
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~------~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFN------IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCC------TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred CcccccCcCCcCCCCeeeecCC------CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 7621111111100111111111 1125666666666778999999999988875422 1122 22222
Q ss_pred CCCeEEEEEeCCCCCEEEEeeCCCeEEEEecc
Q 013436 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (443)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~ 300 (443)
.+.+..+... .+...++..+.+|.+.-++..
T Consensus 248 ~d~lv~~~~~-~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 248 RGRLVGALIV-DDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TCSEEEEEEE-CTTCEEEEEEGGGCEEEEEGG
T ss_pred CCeEEEEEEe-CCCccEEEEcCCCeEEEEehh
Confidence 3445555544 344456667777877777665
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=66.79 E-value=59 Score=27.59 Aligned_cols=205 Identities=7% Similarity=-0.017 Sum_probs=113.1
Q ss_pred CCceEEEEECCCCCEEEEEECCCeEEE---EECCCCeEEEEeeecCCccceEEEEEECC--CCCeEEEEECCCeEEEEEC
Q 013436 124 TSRAYVSQFSADGSLFVAGFQASQIRI---YDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDV 198 (443)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~g~~d~~i~i---wd~~~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~iwd~ 198 (443)
.+.+..+.-......|+.-+..|.++- |++..+.... . +. ....|..+.. + +...++..+.+|.++-..+
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--l-l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--L-KS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPL 97 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC--C-SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEG
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc--c-CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEH
Confidence 445555554444555666667776654 3333331111 2 22 2344666544 4 4678999999999999887
Q ss_pred CCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCC---------CeeeEEeeccC
Q 013436 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---------NKLSLRILAHT 269 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~ 269 (443)
..-. .... ....+.+. ....+..+........++..+..|.++.++... |.....+. ..
T Consensus 98 ~~~~-~~~~----G~~~i~lk------egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~ 165 (276)
T 3no0_A 98 AEFE-YKAQ----GMPIIKLT------EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KN 165 (276)
T ss_dssp GGTT-TCST----TEECSCCC------TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TT
T ss_pred HHhh-hhcC----CeEEEecC------CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CC
Confidence 5432 1100 00000000 011455555555566788889999988887532 11222232 23
Q ss_pred CCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCC---CceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEE--Ee
Q 013436 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK---GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL--WD 344 (443)
Q Consensus 270 ~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i--wd 344 (443)
..|..+... .++..++..+..|.++...+...... ++-+..+ ...+.+..+....+...++..+.+|.+.. ++
T Consensus 166 d~vv~~~~~-~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~ 243 (276)
T 3no0_A 166 DETSGLRIW-NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKIN 243 (276)
T ss_dssp CCEEEEEEE-SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEE
T ss_pred CEEEEEEEe-CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeC
Confidence 556666554 44567888899999999887643221 2222233 23344555443333445666777888877 87
Q ss_pred CCC
Q 013436 345 IRK 347 (443)
Q Consensus 345 ~~~ 347 (443)
...
T Consensus 244 ~~~ 246 (276)
T 3no0_A 244 QKD 246 (276)
T ss_dssp GGG
T ss_pred HHH
Confidence 665
No 364
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=65.51 E-value=69 Score=27.93 Aligned_cols=204 Identities=8% Similarity=-0.030 Sum_probs=106.4
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEE-EeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceecc-cccee
Q 013436 134 ADGSLFVAGFQASQIRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL-ANVTE 211 (443)
Q Consensus 134 ~~~~~l~~g~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~ 211 (443)
|+...+++.+.+|.|+--.+..-.... ........ ..+..+........|+..+..|.+.-+....-..... ..-..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566778888999999876543110000 00112222 2344444444556677778888766655432100000 00000
Q ss_pred cccCceeeccCCCCceecEEEEEEeC---CCCEEEEEecCCeEEEEECCC--------CeeeEEeeccCCCeEEEEEeCC
Q 013436 212 IHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEA--------NKLSLRILAHTSDVNTVCFGDE 280 (443)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~i~~l~~~~---~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~i~~~~~ 280 (443)
....+.+. ....|..+..-+ ++.+++.++.+|.++...+.. +.....+.. .+.+..+... .
T Consensus 82 i~~~i~L~------~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~-~ 153 (323)
T 1wp5_A 82 IANIIPID------RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLT-D 153 (323)
T ss_dssp GGGTSCCC------TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEE-C
T ss_pred hhhccCCC------CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEe-C
Confidence 00011110 111354443333 256799999999999987742 222222332 2555555554 4
Q ss_pred CCCEEEEeeCCCeEEEEecccCCCC-----CceeeeecCCCCCeEEEEECCCCC-EEEEEeCCCCEEEEeCCC
Q 013436 281 SGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 281 ~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 347 (443)
....++..+.+|.+..+........ +.....+. ....|.++..-+++. .|++.+..|..+..++..
T Consensus 154 ~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 154 GMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp SCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 4556778888999888877532211 11222222 234566665434444 788888888888877765
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.83 E-value=32 Score=36.22 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=30.6
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCceeccccc
Q 013436 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (443)
Q Consensus 172 v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 209 (443)
+.+++..++..++++-+.|++++||++.++++.....+
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 44556667888999999999999999999987665443
No 366
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=60.15 E-value=85 Score=27.16 Aligned_cols=159 Identities=8% Similarity=0.026 Sum_probs=87.1
Q ss_pred CCCCeEEEEECCCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECC-
Q 013436 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE- 257 (443)
Q Consensus 179 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~- 257 (443)
++...+++.+.+|.|+-..+..-...... ......+. .... ..+..+........++..+..|.++-+...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~--~~g~~~~~-----lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ 77 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTG--GKGLSSFD-----LNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYE 77 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSS--CCCEECCC-----CCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccC--CCCceecc-----cCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHH
Confidence 45667889999999998766433211100 00000000 0011 134444444456678888889987776643
Q ss_pred --CC------ee---eEEeeccCCCeEEEEEeCC--CCCEEEEeeCCCeEEEEecccCCC---CCceeeeecCCCCCeEE
Q 013436 258 --AN------KL---SLRILAHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMGHLEGITF 321 (443)
Q Consensus 258 --~~------~~---~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~v~~ 321 (443)
.. .. ...+. ....|.++...+. ....++..+.+|.++...+..... .+.....+.. ...+..
T Consensus 78 ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~ 155 (312)
T 1suu_A 78 IKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTS 155 (312)
T ss_dssp SCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEE
T ss_pred CCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEE
Confidence 11 11 11122 2334555543321 456788889999999988864421 2223333333 445555
Q ss_pred EEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 322 IDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
+....+...++..+.+|.+..+....
T Consensus 156 ~~~~~~~~~i~l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 156 AEIVFKDEKVICLSKKGSAFIFNSRD 181 (312)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 55544556788888899998888765
No 367
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=58.22 E-value=1.2e+02 Score=28.12 Aligned_cols=116 Identities=14% Similarity=0.025 Sum_probs=59.5
Q ss_pred ceEEEEECCCCC-EEEEEECCCeEEEEECCCCe---EEEEee--ecC----CccceEEEEEECCC----CCeEEEEEC--
Q 013436 126 RAYVSQFSADGS-LFVAGFQASQIRIYDVERGW---KIQKDI--LAK----SLRWTVTDTSLSPD----QRHLVYASM-- 189 (443)
Q Consensus 126 ~v~~~~~s~~~~-~l~~g~~d~~i~iwd~~~~~---~~~~~~--~~~----~~~~~v~~i~~s~~----~~~l~~~~~-- 189 (443)
..+.|+|.|||+ .|+++...|.|++++..... .+.... ... ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 45555688999999754321 111110 111 11345789999996 433333222
Q ss_pred C----------CeEEEEECCCCc--eeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEec
Q 013436 190 S----------PIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (443)
Q Consensus 190 d----------g~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 247 (443)
+ ..|.-|.+..+. .......... +... .....| ....|+|.|||.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i---~~~~-~~~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVF---LEVA-ELHRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEE---EEEE-ESSSSS--CEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEE---EEcC-CCCCcc--cCCcEeECCCCcEEEEeCC
Confidence 1 134446654321 1000000000 0011 112234 3578999999987776554
No 368
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=56.38 E-value=29 Score=33.34 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=38.7
Q ss_pred EEEEEECCCCCeEEEEECC------------CeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCC
Q 013436 172 VTDTSLSPDQRHLVYASMS------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (443)
Q Consensus 172 v~~i~~s~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 239 (443)
.-.|+|+|.|.+++.-..+ ..+.+.+..+++...+.... ...+++.++|+||+
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P---------------~gaE~TG~~fspDg 542 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP---------------IGCEVTGISFSPDQ 542 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC---------------TTCEEEEEEECTTS
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC---------------CCccCcCeeECCCC
Confidence 5679999999866654322 23555566666655444322 12379999999999
Q ss_pred CEEEEE
Q 013436 240 RELVAG 245 (443)
Q Consensus 240 ~~l~~~ 245 (443)
+.|++.
T Consensus 543 ~tlfvn 548 (592)
T 3zwu_A 543 KTLFVG 548 (592)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 887765
No 369
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=55.90 E-value=94 Score=26.32 Aligned_cols=118 Identities=10% Similarity=0.052 Sum_probs=73.3
Q ss_pred cEEEEEEeC-CCCEEEEEecCCeEEEEECCCC------eeeEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEeccc
Q 013436 229 GIFSLKFST-DGRELVAGSSDDCIYVYDLEAN------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301 (443)
Q Consensus 229 ~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~ 301 (443)
.|..+.... +..+++..+.+|.|+...+..- .....+.. .+.+..+... .....++..+..|.+..+....
T Consensus 69 ~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~-~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 69 KIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASS-VDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp CEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEEC-CSSCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEe-CCCCEEEEEECCCEEEEEEhhh
Confidence 455554321 4678999999999999886442 21222322 3455555554 4555788888999988887653
Q ss_pred CCC-----CCceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCCC
Q 013436 302 LNV-----KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (443)
Q Consensus 302 ~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (443)
... .+.....+.. ...|..+...+++..++..+..|.++...+....
T Consensus 147 ip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~ 198 (276)
T 3no0_A 147 VPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIP 198 (276)
T ss_dssp SCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSC
T ss_pred CCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcc
Confidence 221 1222222332 3556666555566788888999999999877643
No 370
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.49 E-value=48 Score=31.83 Aligned_cols=60 Identities=23% Similarity=0.271 Sum_probs=39.4
Q ss_pred ceEEEEECCCCCEEEEEECC------------CeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEE
Q 013436 126 RAYVSQFSADGSLFVAGFQA------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 187 (443)
..--|+|+|.|++++.-..+ ..+.+.+..+++. ..+... ....+++.++|+||++.|.+.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~-~rf~~~-P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVG-PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE-EEEEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE-EEEEeC-CCCccCcCeeECCCCCEEEEE
Confidence 34568999999966654322 2355666666643 333332 345689999999999887764
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=53.28 E-value=48 Score=31.62 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=39.5
Q ss_pred eEEEEEECCCCCeEEEEEC------------CCeEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCC
Q 013436 171 TVTDTSLSPDQRHLVYASM------------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238 (443)
Q Consensus 171 ~v~~i~~s~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 238 (443)
....|.|.++|.+.+.... ...|..++..+++...+..... ...++.++|+||
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~---------------~aEpnGiafSPD 541 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---------------GCEVTGISFSPD 541 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT---------------TCEEEEEEECTT
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC---------------CccccCCEECCC
Confidence 4678999999987663321 1256666666666554432111 126899999999
Q ss_pred CCEEEEEe
Q 013436 239 GRELVAGS 246 (443)
Q Consensus 239 ~~~l~~~~ 246 (443)
++.|+++-
T Consensus 542 ~ktLfV~v 549 (592)
T 4a9v_A 542 QKTLFVGI 549 (592)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 99887763
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.82 E-value=15 Score=38.78 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=32.7
Q ss_pred CceEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEeee
Q 013436 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL 164 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~d~~i~iwd~~~~~~~~~~~~ 164 (443)
..+.+++..++..++++-+.|+++|||++.++.++.....
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 3456667778889999999999999999999988776443
No 373
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=52.27 E-value=1e+02 Score=25.72 Aligned_cols=106 Identities=10% Similarity=-0.001 Sum_probs=57.9
Q ss_pred EEEEEecCCeEEEEECCCCee-eEEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccC---CCCCceeeeec--C
Q 013436 241 ELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL---NVKGKPAGVLM--G 314 (443)
Q Consensus 241 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~--~ 314 (443)
.+++.+.+|.|+--....... ...+.. .+.+..+... .....|+..+..|.++-+..... ...+.++..+. .
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~-~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKG-KSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEE-ETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEe-CCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 455667778777655433110 112222 2344444443 33445566678888766655432 12233221111 1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 315 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
....|.++....++.+|+..+..|.++...+...
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 2356777644345677888899999999988663
No 374
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=46.63 E-value=1.4e+02 Score=25.66 Aligned_cols=204 Identities=9% Similarity=0.010 Sum_probs=105.6
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEE------eeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceecc-
Q 013436 134 ADGSLFVAGFQASQIRIYDVERGWKIQK------DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL- 206 (443)
Q Consensus 134 ~~~~~l~~g~~d~~i~iwd~~~~~~~~~------~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~- 206 (443)
|+...+++.+.+|.|+--.+..-..... ....... ..+..+........|+..+..|.++-+....-.....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 4566788889999998777654211110 0011122 2243444444555677777888766555421100000
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEe---CCCCEEEEEecCCeEEEEECCC-------CeeeEEeeccCCCeEEEE
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFS---TDGRELVAGSSDDCIYVYDLEA-------NKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~---~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~ 276 (443)
..-......+.+. ....|..+..- .++.+++..+..|.++...+.. +.....+..+ +.+..+.
T Consensus 80 a~G~~i~~~l~l~------~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~ 152 (307)
T 1zi0_A 80 ARGRPIVNLLPLE------QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVD 152 (307)
T ss_dssp SCCEEGGGTSCCC------TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEE
T ss_pred CCCeEhhhccCCC------CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEE
Confidence 0000000000110 11135544332 3456789999999999887642 2222223333 5565555
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCCC-----ceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKG-----KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
.. .....++..+.+|.+..+........+ .....+. ....|.++...+++..+++.+..|.++-.++..
T Consensus 153 ~~-~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 153 LT-SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EE-CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred Ee-CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 54 344567778888988888765332121 1111222 335666766555566788888999998887755
No 375
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=42.55 E-value=1.7e+02 Score=25.29 Aligned_cols=205 Identities=10% Similarity=0.016 Sum_probs=111.7
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEE------EeeecCCccceEEEEEECCCCCeEEEEECCCeEEEEECCCCceec-c
Q 013436 134 ADGSLFVAGFQASQIRIYDVERGWKIQ------KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-L 206 (443)
Q Consensus 134 ~~~~~l~~g~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~ 206 (443)
++..++++.+.+|.|+--.+..-.... ........ ..+..+........++..+..|.++-+....-.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 466788889999999988664321110 01111222 234444444455677778888887766653210000 0
Q ss_pred ccceecccCceeeccCCCCceecEEEEEEeC---CCCEEEEEecCCeEEEEECCC-------CeeeEEeeccCCCeEEEE
Q 013436 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEA-------NKLSLRILAHTSDVNTVC 276 (443)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~---~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~ 276 (443)
..-......+.+. ....|..+...+ +..+++..+..|.++...+.. +.....+.. .+.+..+.
T Consensus 85 ~~G~~i~~~l~l~------~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~ 157 (312)
T 1suu_A 85 SKGQNISELINLG------DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAE 157 (312)
T ss_dssp ---CBGGGTSCCC------TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEE
T ss_pred CCCcChhhccCCC------CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEE
Confidence 0000000011111 011344443333 466788899999999887743 222223333 45666666
Q ss_pred EeCCCCCEEEEeeCCCeEEEEecccCCCC-----CceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCEEEEeCCCC
Q 013436 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (443)
Q Consensus 277 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (443)
.. .....++..+.+|.+..+........ +.....+.. ...|..+..-.++..+++.+..|..+..++...
T Consensus 158 ~~-~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 158 IV-FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EE-CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred Ee-CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 65 44557778899999988887642111 222222332 345666655555667888889999999888663
No 376
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=41.37 E-value=2.1e+02 Score=27.95 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=44.6
Q ss_pred ceEEEEEC----CCCC---EEEEEECCCeEE-EEECCCCeEEEEeeecCCccceEEEEEECCCC--CeEEEEECCCeEEE
Q 013436 126 RAYVSQFS----ADGS---LFVAGFQASQIR-IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVYASMSPIVHI 195 (443)
Q Consensus 126 ~v~~~~~s----~~~~---~l~~g~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~~~~~dg~i~i 195 (443)
..+.++.. .+++ .++.|..+|.|. +.....+..+...........+|..|.++++. .+|.+++..+.++|
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 45666653 4443 677899999864 33444433333333233345678899999987 88888888775554
No 377
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=41.31 E-value=2.7e+02 Score=27.41 Aligned_cols=35 Identities=6% Similarity=-0.003 Sum_probs=25.5
Q ss_pred ceEEEEE-ECCCCCeEEEEE-CCC----eEEEEECCCCcee
Q 013436 170 WTVTDTS-LSPDQRHLVYAS-MSP----IVHIVDVGSGTME 204 (443)
Q Consensus 170 ~~v~~i~-~s~~~~~l~~~~-~dg----~i~iwd~~~~~~~ 204 (443)
.....+. ++|++++++.+- ..| .++++|+.+++..
T Consensus 129 ~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~ 169 (711)
T 4hvt_A 129 VAYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFV 169 (711)
T ss_dssp EEEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEEC
T ss_pred EEEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcC
Confidence 4455666 899998877643 333 7999999998765
No 378
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=40.96 E-value=1.7e+02 Score=27.88 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=41.0
Q ss_pred CceEEEEECCCCCEEEEEEC------------CCeEEEEECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEE
Q 013436 125 SRAYVSQFSADGSLFVAGFQ------------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (443)
Q Consensus 125 ~~v~~~~~s~~~~~l~~g~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~ 188 (443)
.....|.|+++|.+.++... ...|..++..+++. ..+.. ......++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel-~~fl~-~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMV-GPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE-EEEEE-CCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeE-EEEEe-CCCCccccCCEECCCCCEEEEEE
Confidence 45678999999997774321 12566777767743 33222 12234689999999999887753
No 379
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=35.16 E-value=3.4e+02 Score=26.76 Aligned_cols=63 Identities=10% Similarity=-0.053 Sum_probs=35.9
Q ss_pred CceEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEEeeecCC----ccceEEEEEECCC-CCeEEEEE
Q 013436 125 SRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKS----LRWTVTDTSLSPD-QRHLVYAS 188 (443)
Q Consensus 125 ~~v~~~~~s~~~-~~l~~g~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~i~~s~~-~~~l~~~~ 188 (443)
+.|..++++|.. ..++++...+.|...+ +.+..-..+..... ....|.+|++.|. ...++++.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 379999999974 4566666556655554 23333333221111 1235999999984 34444443
No 380
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=34.63 E-value=3.6e+02 Score=26.88 Aligned_cols=157 Identities=10% Similarity=0.040 Sum_probs=0.0
Q ss_pred cceEEEEEECCC-CCeEEEEECCCeEEEEECCCCceeccccce-----ecccCceeeccCCCCceecEEEEEEeC-CCCE
Q 013436 169 RWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVT-----EIHDGLDFSAADDGGYSFGIFSLKFST-DGRE 241 (443)
Q Consensus 169 ~~~v~~i~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~ 241 (443)
...|.+|+++|. ...+++++..+.|...+=.......+.... ... .|.+|++.| +...
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~---------------~i~~ia~dp~~~~~ 78 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIM---------------GTESIALDPNNPDR 78 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGC---------------SEEEEEEETTEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCC---------------ceeEEEECCCCCCE
Q ss_pred EEEEecCC-----eEEEEECCCCeeeEEeeccCC---------CeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCc
Q 013436 242 LVAGSSDD-----CIYVYDLEANKLSLRILAHTS---------DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (443)
Q Consensus 242 l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~---------~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 307 (443)
++++.... ...+.....++--..+..... .+..+++.|.+.+.++.+...+. ||--.+...+.+
T Consensus 79 i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~ 156 (789)
T 1sqj_A 79 LYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWT 156 (789)
T ss_dssp EEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCE
T ss_pred EEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccC
Q ss_pred eeeeec---CCCCCeEEEEECC-CCCEEEEEeCC-CCEEE
Q 013436 308 PAGVLM---GHLEGITFIDSRG-DGRYLISNGKD-QAIKL 342 (443)
Q Consensus 308 ~~~~~~---~~~~~v~~~~~~~-~~~~l~s~~~d-g~i~i 342 (443)
.+..+. .....+..+.++| ++..+.++..+ +.|..
T Consensus 157 ~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~ 196 (789)
T 1sqj_A 157 NVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV 196 (789)
T ss_dssp EETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred CCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEE
No 381
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=31.38 E-value=94 Score=29.44 Aligned_cols=71 Identities=11% Similarity=0.017 Sum_probs=43.8
Q ss_pred CceEEEEECCCC--CEEEEEECCCeEEEEECCCCe---EEEEeeecCCccceEE-EEEECCCCCeEEEEECCCeEEE
Q 013436 125 SRAYVSQFSADG--SLFVAGFQASQIRIYDVERGW---KIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHI 195 (443)
Q Consensus 125 ~~v~~~~~s~~~--~~l~~g~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~v~-~i~~s~~~~~l~~~~~dg~i~i 195 (443)
...+.++....+ ..+..|..+|.|.-..+..+. .+...........+|. .|.+++++.+|.+++.++.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 346666665544 457788999987655443221 2222222323345675 8999999999999887765554
No 382
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=30.69 E-value=2.6e+02 Score=23.99 Aligned_cols=208 Identities=8% Similarity=-0.046 Sum_probs=107.6
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECC---C------CeEEEEeeecCCccceEEEEEE-C--CCCCeEEEEECCCeEE
Q 013436 127 AYVSQFSADGSLFVAGFQASQIRIYDVE---R------GWKIQKDILAKSLRWTVTDTSL-S--PDQRHLVYASMSPIVH 194 (443)
Q Consensus 127 v~~~~~s~~~~~l~~g~~d~~i~iwd~~---~------~~~~~~~~~~~~~~~~v~~i~~-s--~~~~~l~~~~~dg~i~ 194 (443)
+..+........|+..+..|.++-+... . |..+.....+. ....|.++.. . .++.+++.++.+|.++
T Consensus 44 l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~K 122 (307)
T 1zi0_A 44 IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVK 122 (307)
T ss_dssp EEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEE
Confidence 3333333345556666677876555432 2 21111111122 2223555433 2 3456789999999999
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC---------eeeEEe
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---------KLSLRI 265 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~ 265 (443)
-..+..-..... .+.... ..... ..+..+....+...++..+.+|.+..++...- .....+
T Consensus 123 rt~l~e~~~~~r-------~G~~~i--~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L 192 (307)
T 1zi0_A 123 KTVLTEFNRLRT-------AGKVAI--KLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 192 (307)
T ss_dssp EEEGGGGTTCCT-------TCEESS--CCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC
T ss_pred EEEHHHhhcccc-------CCeEEE--EECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe
Confidence 887643211110 000000 00011 24555555555567888889999888876321 111122
Q ss_pred eccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCC-----CceeeeecCCCCCeEEEEECCCCCEEEEEeCCCCE
Q 013436 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340 (443)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 340 (443)
.....|.++... .++..+++.+..|.++-.++...... +.....+....+.+..+....+...++..+.+|.+
T Consensus 193 -~~~d~Vv~~~~~-~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 193 -GEGDKVVSLIVP-RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp -CTTCCEEEEECC-CSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred -CCCCEEEEEEEe-cCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 234566666654 44557888899999999887543211 11122232223445444433334556666677877
Q ss_pred EEEeCCC
Q 013436 341 KLWDIRK 347 (443)
Q Consensus 341 ~iwd~~~ 347 (443)
.-+++..
T Consensus 271 ir~~~~~ 277 (307)
T 1zi0_A 271 VRTRVSE 277 (307)
T ss_dssp EEEEGGG
T ss_pred EEEeccc
Confidence 7777665
No 383
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=23.99 E-value=3.8e+02 Score=23.71 Aligned_cols=205 Identities=8% Similarity=0.021 Sum_probs=0.0
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEE-----------ECCCCeEEEEeeecCCccceEEEEEECCCCCeEEEEECCCeEE
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIY-----------DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iw-----------d~~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~ 194 (443)
.+..++.+.-....++-..||.|..| +............... +.-+..+.-....+....+|.|+
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~----~~i~~va~G~~hs~alt~~G~v~ 181 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRG----IEVVDVAAGGAHSACVTAAGDLY 181 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT----SCEEEEEECSSEEEEEETTSCEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCC----CeEEEEEeCcCeEEEEeCCCeEE
Q ss_pred EEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCC------------Ceee
Q 013436 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA------------NKLS 262 (443)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~------------~~~~ 262 (443)
.|-........................... .|..++........++-..+|.|+.|-... ..+.
T Consensus 182 ~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~----~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~ 257 (389)
T 3kci_A 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGH----RVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPM 257 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTS----CEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEE
T ss_pred EeCCCCCCCcCCCCCcccccceEecccCCC----eEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccE
Q ss_pred EEeeccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCCCc--------eeeeecCCCCCeEEEEECCCCCEEEEE
Q 013436 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK--------PAGVLMGHLEGITFIDSRGDGRYLISN 334 (443)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~s~ 334 (443)
..-......|..++.. ....+.-..||.|..|-.......+. +..........|..|+. .....++.
T Consensus 258 ~v~~~~~~~v~~v~~G---~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al 332 (389)
T 3kci_A 258 KIDSLTGLGVVKVECG---SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCC 332 (389)
T ss_dssp ECGGGTTSCEEEEEEE---TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEE
T ss_pred EecccCCCcEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEE
Q ss_pred eCCCCEEEE
Q 013436 335 GKDQAIKLW 343 (443)
Q Consensus 335 ~~dg~i~iw 343 (443)
..||.|+.|
T Consensus 333 ~~~G~v~~w 341 (389)
T 3kci_A 333 TEDGEVYTW 341 (389)
T ss_dssp ETTCCEEEE
T ss_pred CCCCCEEEe
No 384
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.77 E-value=1.9e+02 Score=20.25 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=15.3
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEeCCC
Q 013436 320 TFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (443)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (443)
..+.+..+|.+++... ++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 3466777787666533 3443 776554
No 385
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=22.26 E-value=3.8e+02 Score=23.14 Aligned_cols=211 Identities=7% Similarity=-0.004 Sum_probs=106.4
Q ss_pred ceEEEEECCCCCEEEEEECCCeEEEEECC---------CCeEEEEeeecCCccceEEEE-EECC--CCCeEEEEECCCeE
Q 013436 126 RAYVSQFSADGSLFVAGFQASQIRIYDVE---------RGWKIQKDILAKSLRWTVTDT-SLSP--DQRHLVYASMSPIV 193 (443)
Q Consensus 126 ~v~~~~~s~~~~~l~~g~~d~~i~iwd~~---------~~~~~~~~~~~~~~~~~v~~i-~~s~--~~~~l~~~~~dg~i 193 (443)
.+..+........|+..+..|.+.-+... .|..+.....+.. ...|.++ .... ++.+++.++.+|.+
T Consensus 40 ~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~i 118 (323)
T 1wp5_A 40 RLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDR-DEEIIKAIPINDFELNGYFLFVTRNGMV 118 (323)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCT-TCCEEEEEEESCTTSSCEEEEEETTSEE
T ss_pred EEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCC-CCEEEEEEEecccCCCceEEEEeCCCeE
Confidence 34344444445566666677876655542 1222112111222 2235543 4432 25679999999999
Q ss_pred EEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCCEEEEEecCCeEEEEECCCC-------eeeEEee
Q 013436 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-------KLSLRIL 266 (443)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~ 266 (443)
+-..+..-..... ..+....... .+ ..+..+........++..+.+|.+..++...- +-+..+.
T Consensus 119 Krt~l~e~~~~~r------~~G~~ai~l~-e~--d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~ 189 (323)
T 1wp5_A 119 KKTELKHYKAQRY------SKPLTGINLK-ND--DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMN 189 (323)
T ss_dssp EEEEGGGGCCSCC------SSCEECSCCC-TT--CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCC
T ss_pred EEeEHHHhhhccc------cCceEEEEeC-CC--CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEE
Confidence 9888753221110 0000000000 01 24545555555667888889999888876421 1111111
Q ss_pred -ccCCCeEEEEEeCCCCCEEEEeeCCCeEEEEecccCCCC---Cceeee---ecCCCCCeEE-EEECCCCCEEEEEeCCC
Q 013436 267 -AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK---GKPAGV---LMGHLEGITF-IDSRGDGRYLISNGKDQ 338 (443)
Q Consensus 267 -~~~~~v~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~---~~~~~~~v~~-~~~~~~~~~l~s~~~dg 338 (443)
.....|.++...+++...+++.+..|..+..++...... ++-+.. +......+.. +.+.+ +..++..+.+|
T Consensus 190 L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~-~~~i~~it~~g 268 (323)
T 1wp5_A 190 LKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQD-SDTIYLQTEKS 268 (323)
T ss_dssp CCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECT-TCEEEEEETTS
T ss_pred eCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCC-CCeEEEEeCCC
Confidence 223456666554343326788888998888887642211 111112 2222224543 33443 44566666777
Q ss_pred CEEEEeCCC
Q 013436 339 AIKLWDIRK 347 (443)
Q Consensus 339 ~i~iwd~~~ 347 (443)
.+....+..
T Consensus 269 ~~ir~~~~~ 277 (323)
T 1wp5_A 269 FIETIKVGD 277 (323)
T ss_dssp CEEEEEGGG
T ss_pred eEEEEEhhh
Confidence 777666655
No 386
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=21.38 E-value=5.4e+02 Score=24.60 Aligned_cols=119 Identities=15% Similarity=0.238 Sum_probs=62.2
Q ss_pred EEEEECCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeeec------CCccceEEEEEECCCCC-eEEEEE----CCC
Q 013436 128 YVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILA------KSLRWTVTDTSLSPDQR-HLVYAS----MSP 191 (443)
Q Consensus 128 ~~~~~s~~~~~l~~g~~-----d~~i~iwd~~~~~~~~~~~~~------~~~~~~v~~i~~s~~~~-~l~~~~----~dg 191 (443)
.++++++| .++.|.- .|.+.+|+...+......... ......|....|+.|+. -+++|. ..|
T Consensus 169 ~Sa~~~~d--~~v~GApG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~DlvvGAP~~~~~G 246 (597)
T 3v4v_A 169 ISSFYTKD--LIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQHEQIG 246 (597)
T ss_dssp SSEEECSS--EEEEEETTHHHHTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSCEEEEEETTGGGTC
T ss_pred eeeEecCC--ceEEccccccccccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCeEEEEecccccCCc
Confidence 44677766 5666654 478999998765321110000 11223566666777765 455553 357
Q ss_pred eEEEEECCCCceeccccceecccCceeeccCCCCceecEEEEEEeCCCC-EEEEEe-------cCCeEEEEEC
Q 013436 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGS-------SDDCIYVYDL 256 (443)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~-------~dg~i~iwd~ 256 (443)
.|.++....+.......+.....+ ......+....++.||. -|++|. ..|.|+||--
T Consensus 247 ~V~v~~~~~~~~~~~~~l~G~~~g--------~~fG~sva~~D~ngDG~~DlvVGap~~~~~~~~G~v~vy~~ 311 (597)
T 3v4v_A 247 KAYIFSIDEKELNILHEMKGKKLG--------SYFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRVFVYIN 311 (597)
T ss_dssp EEEEEEECSSSEEEEEEEECSSTT--------CCTTSEEEEECTTCSSSCEEEEEETTCCSSSCCCEEEEEEE
T ss_pred eEEEEecCCCceeEEEEecccccC--------CCCcceEEEEeeCCCCCceEEEEcccccCCCcCCeEEEEEE
Confidence 899998765543322221111000 00112344445666663 466654 4588998853
No 387
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.69 E-value=2.1e+02 Score=26.62 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=42.1
Q ss_pred ceEEEEECC----CC--CEEEEEECCCeEEEEECCCCe-------EEEEeeecCCccceEEEEEECCCCCeEEEEECCCe
Q 013436 126 RAYVSQFSA----DG--SLFVAGFQASQIRIYDVERGW-------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (443)
Q Consensus 126 ~v~~~~~s~----~~--~~l~~g~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~ 192 (443)
..+.++... ++ ..+..|..+|.|.=.-+.... .+...........+|..|.++++..+|.+++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456665553 24 347788899976544332211 11111122223467999999999999999998886
Q ss_pred EEE
Q 013436 193 VHI 195 (443)
Q Consensus 193 i~i 195 (443)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
Done!