BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013437
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 113/450 (25%), Positives = 196/450 (43%), Gaps = 44/450 (9%)
Query: 1 MEVKIIETKQILPSTPPFKDEGEHELPLSHLDND------PNIRSFTFRYIRVYTASADI 54
M++++ E+ + P+ E P +L N PN + + + R +S
Sbjct: 6 MKIEVKESTMVRPA---------QETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFF 56
Query: 55 DRHPFDVIANSLSLALVHYYPLAGTLRPVGKSSSNQRLSLFCQSGQTFPLVNATADCTXX 114
D V+ ++LS ALV +YP+AG L K + R+ + C +G+ V A +D
Sbjct: 57 DAK---VLKDALSRALVPFYPMAGRL----KRDEDGRIEIEC-NGEGVLFVEAESDGVVD 108
Query: 115 XXXXXXXXXE--QLVPAPTLEEGLANPC--ILQVTVFKCGGYTLGTAVHHSMCDGMGATL 170
E +L+PA +G+++ +LQVT FKCGG +LG + H DG
Sbjct: 109 DFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLH 168
Query: 171 VFGAAGELARGATKISVQPVWDRATLLGPRHPPRAEGPVLEFLGTEK-GFKPY---SHDV 226
+ ++ARG +++ P DR TLL R PP+ + +E+ P S V
Sbjct: 169 FINSWSDMARG-LDVTLPPFIDR-TLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSV 226
Query: 227 GPVVRQCFDVADECLDGLK-DALFDECGMKFTTFEAFGAFVWRAKVRCSGISGDKNVKFA 285
F + E + LK + D + ++++E VWR + G+ D+ K
Sbjct: 227 PETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLY 286
Query: 286 YPSNIRRTVKPPLPLGYWGNGCIPLYAQLSAKELVEQPLWKTAELIKKSKSNANDEYVHS 345
++ R ++P LP GY+GN A +L +P+W A I + + +++Y+ S
Sbjct: 287 IATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRS 346
Query: 346 FIDFQELYYE-DGITAGREV-----SAFTDWRHVGHTSVDFGWGGPVIMFPLSKNLVGSK 399
+D+ EL + + G T W + DFGWG P+ M P + +
Sbjct: 347 ALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGP---GGIAYE 403
Query: 400 EPCYFLPPRKKDG-FTLQVNLRASALPAFR 428
+ LP DG ++ ++L+ + F+
Sbjct: 404 GLSFILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 114/455 (25%), Positives = 197/455 (43%), Gaps = 54/455 (11%)
Query: 1 MEVKIIETKQILPSTPPFKDEGEHELPLSHLDND------PNIRSFTFRYIRVYTASADI 54
M++++ E+ + P+ E P +L N PN + + + R +S
Sbjct: 3 MKIEVKESTMVRPA---------QETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFF 53
Query: 55 DRHPFDVIANSLSLALVHYYPLAGTLRPVGKSSSNQRLSLFCQSGQTFPLVNATADCTXX 114
D V+ ++LS ALV +YP+AG L K + R+ + C +G+ V A +D
Sbjct: 54 DAK---VLKDALSRALVPFYPMAGRL----KRDEDGRIEIEC-NGEGVLFVEAESDGVVD 105
Query: 115 XXXXXXXXXE--QLVPAPTLEEGLANPC--ILQVTVFKCGGYTLGTAVHHSMCDGMGATL 170
E +L+PA +G+++ +LQVT FKCGG +LG + H DG
Sbjct: 106 DFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLH 165
Query: 171 VFGAAGELARGATKISVQPVWDRATLLGPRHPPRAEGPVLEFL---------GTEKGFKP 221
+ ++ARG +++ P DR TLL R PP+ + +E+ T K
Sbjct: 166 FINSWSDMARG-LDVTLPPFIDR-TLLRARDPPQPQFQHIEYQPPPALKVSPQTAK---- 219
Query: 222 YSHDVGPVVRQCFDVADECLDGLK-DALFDECGMKFTTFEAFGAFVWRAKVRCSGISGDK 280
S V F + E + LK + D + ++++E VWR + G+ D+
Sbjct: 220 -SDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQ 278
Query: 281 NVKFAYPSNIRRTVKPPLPLGYWGNGCIPLYAQLSAKELVEQPLWKTAELIKKSKSNAND 340
K ++ R ++P LP GY+GN A +L +P+W A I + + ++
Sbjct: 279 GTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDN 338
Query: 341 EYVHSFIDFQELYYE-DGITAGREV-----SAFTDWRHVGHTSVDFGWGGPVIMFPLSKN 394
+Y+ S +D+ EL + + G T W + DFGWG P+ M P
Sbjct: 339 DYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGP---G 395
Query: 395 LVGSKEPCYFLPPRKKDG-FTLQVNLRASALPAFR 428
+ + + LP DG ++ ++L+ + F+
Sbjct: 396 GIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQ 430
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 112/450 (24%), Positives = 195/450 (43%), Gaps = 44/450 (9%)
Query: 1 MEVKIIETKQILPSTPPFKDEGEHELPLSHLDND------PNIRSFTFRYIRVYTASADI 54
M++++ E+ + P+ E P +L N PN + + + R +S
Sbjct: 6 MKIEVKESTMVRPA---------QETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFF 56
Query: 55 DRHPFDVIANSLSLALVHYYPLAGTLRPVGKSSSNQRLSLFCQSGQTFPLVNATADCTXX 114
D V+ ++LS ALV +YP+AG L K + R+ + C +G+ V A +D
Sbjct: 57 DAK---VLKDALSRALVPFYPMAGRL----KRDEDGRIEIEC-NGEGVLFVEAESDGVVD 108
Query: 115 XXXXXXXXXE--QLVPAPTLEEGLANPC--ILQVTVFKCGGYTLGTAVHHSMCDGMGATL 170
E +L+PA +G+++ +LQVT FK GG +LG + H DG
Sbjct: 109 DFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLH 168
Query: 171 VFGAAGELARGATKISVQPVWDRATLLGPRHPPRAEGPVLEFLGTEK-GFKPY---SHDV 226
+ ++ARG +++ P DR TLL R PP+ + +E+ P S V
Sbjct: 169 FINSWSDMARG-LDVTLPPFIDR-TLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSV 226
Query: 227 GPVVRQCFDVADECLDGLK-DALFDECGMKFTTFEAFGAFVWRAKVRCSGISGDKNVKFA 285
F + E + LK + D + ++++E VWR + G+ D+ K
Sbjct: 227 PETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLY 286
Query: 286 YPSNIRRTVKPPLPLGYWGNGCIPLYAQLSAKELVEQPLWKTAELIKKSKSNANDEYVHS 345
++ R ++P LP GY+GN A +L +P+W A I + + +++Y+ S
Sbjct: 287 IATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRS 346
Query: 346 FIDFQELYYE-DGITAGREV-----SAFTDWRHVGHTSVDFGWGGPVIMFPLSKNLVGSK 399
+D+ EL + + G T W + DFGWG P+ M P + +
Sbjct: 347 ALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGP---GGIAYE 403
Query: 400 EPCYFLPPRKKDG-FTLQVNLRASALPAFR 428
+ LP DG ++ ++L+ + F+
Sbjct: 404 GLSFILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/406 (23%), Positives = 157/406 (38%), Gaps = 61/406 (15%)
Query: 2 EVKIIETKQILPSTPPFKDEGEHELPLSHLDNDPNIRSFTFRYIRVYTASADIDRHPFDV 61
+++ + + ILPS+P + +++ SHLD + + +I Y D + P
Sbjct: 4 QMEKVSEELILPSSPTPQSLKCYKI--SHLDQ--LLLTCHIPFILFYPNPLDSNLDPAQT 59
Query: 62 ---IANSLSLALVHYYPLAGTLRPVGKSSSNQRLSLFCQSGQTFPLVNATADCTXXXXXX 118
+ SLS L H+YPLAG + N S+ C P V A
Sbjct: 60 SQHLKQSLSKVLTHFYPLAGRI--------NVNSSVDCNDSGV-PFVEARVQAQLSQAIQ 110
Query: 119 XXXXXEQL--------VPAPTLEEGLANPCILQVTVFKCGGYTLGTAVHHSMCDGMGATL 170
E+L P +E P ++++ F+CGG +G + H + D +
Sbjct: 111 NVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLAT 170
Query: 171 VFGAAGELARGATKISVQPVWDRATLLGPRH-PPRAEGPVLEFLGTE----KGFKPYSHD 225
A RG T+I V P +D L RH PP P E + E K F
Sbjct: 171 FLNAWTATCRGETEI-VLPNFD----LAARHFPPVDNTPSPELVPDENVVMKRFVFDKEK 225
Query: 226 VGPVVRQCFDVADECLDGLKDALFDECGMKFTTFEAFGAFVWRAKVRCSGISGDKNVKFA 285
+G + Q ++E F+ + A++W+ + + KF
Sbjct: 226 IGALRAQASSASEE--------------KNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFV 271
Query: 286 YPS--NIRRTVKPPLPLGYWGNGCIPLYAQLSAKELVEQPLWKTAELI---KKSKSNAND 340
N+R + PPLP GN L+A + A+ + P +LI + S D
Sbjct: 272 VVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFP-----DLIGPLRTSLEKTED 326
Query: 341 EYVHSFIDFQELYYEDGITAGREVSAFTDWRHVGHTSVDFGWGGPV 386
++ H + YE +E+ +FT W +G +DFGWG P+
Sbjct: 327 DHNHELLKGMTCLYE---LEPQELLSFTSWCRLGFYDLDFGWGKPL 369
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 98/418 (23%), Positives = 159/418 (38%), Gaps = 57/418 (13%)
Query: 3 VKIIETKQILPSTPPFKDEGEHELPLSHLD----NDPNIRSFTFRYIRVYTASADIDRHP 58
+ ++E Q+ +PP G+ L L+ D P I + F + + + P
Sbjct: 7 LTVLEQSQV---SPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELPITRSQFTETVVP 63
Query: 59 FDVIANSLSLALVHYYPLAGTLRPVGKSSSNQRLSLFCQSGQ----TFPLVNATADCTXX 114
I +SLS+ L H+YP G L V + ++ + G TF N +
Sbjct: 64 --NIKHSLSITLKHFYPFVGKL--VVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTG 119
Query: 115 XXXXXXXXXEQLVPAPTLEEGLANPCI------LQVTVFKCGGYTLGTAVHHSMCDGMGA 168
LVP L++ CI +QVT+F G +G HH + D
Sbjct: 120 NHPRNCDKFYDLVPILGESTRLSD-CIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTR 178
Query: 169 TLVFGAAGELARGATKIS------VQPVWDRATLLGPRHPPRAEGPVLEFLGTEKGFKPY 222
A +AR +P++DR ++P E L+ E + Y
Sbjct: 179 FCFLKAWTSIARSGNNDESFLANGTRPLYDRII----KYPMLDEA-YLKRAKVESFNEDY 233
Query: 223 SHD--VGPV--VRQCFDVADECLDGLKDALFDECGM--KFTTFEAFGAFVWR--AKVRCS 274
GP +R F + ++ LKD + + ++F A++W AK R
Sbjct: 234 VTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSR-- 291
Query: 275 GISGDKNVKFAYPSNIRRTVKPPLPLGYWGNGCIPLYAQLSAKELV--EQPLWKTAELIK 332
DK F +P + R +KPP+P Y+GN C+ A ++ L+ ++ A+LI
Sbjct: 292 ---NDKLQLFGFPIDRRARMKPPIPTAYFGN-CVGGCAAIAKTNLLIGKEGFITAAKLIG 347
Query: 333 KSKSNANDEYVHSFI-----DFQELYYEDGITAGREVSAFTDWRHVGHTSVDFGWGGP 385
++ +Y + F +L E T VS R +DFGWG P
Sbjct: 348 ENLHKTLTDYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFY---DMDFGWGKP 402
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 98/418 (23%), Positives = 157/418 (37%), Gaps = 57/418 (13%)
Query: 3 VKIIETKQILPSTPPFKDEGEHELPLSHLD----NDPNIRSFTFRYIRVYTASADIDRHP 58
+ ++E Q+ +PP G+ L L+ D P I + F + + + P
Sbjct: 7 LTVLEQSQV---SPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELPITRSQFTETVVP 63
Query: 59 FDVIANSLSLALVHYYPLAGTLRPVGKSSSNQRLSLFCQSGQ----TFPLVNATADCTXX 114
I +SLS+ L H+YP G L V + ++ + G TF N +
Sbjct: 64 --NIKHSLSITLKHFYPFVGKL--VVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTG 119
Query: 115 XXXXXXXXXEQLVPAPTLEEGLANPCI------LQVTVFKCGGYTLGTAVHHSMCDGMGA 168
LVP L++ CI +QVT+F G +G HH + D
Sbjct: 120 NHPRNCDKFYDLVPILGESTRLSD-CIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTR 178
Query: 169 TLVFGAAGELARGATKIS------VQPVWDRATLLGPRHPPRAEGPVLEFLGTEKGFKPY 222
A +AR +P++DR ++P E L+ E + Y
Sbjct: 179 FCFLKAWTSIARSGNNDESFLANGTRPLYDRII----KYPXLDEA-YLKRAKVESFNEDY 233
Query: 223 SHD--VGPV--VRQCFDVADECLDGLKDALFDECGM--KFTTFEAFGAFVWR--AKVRCS 274
GP +R F + ++ LKD + + ++F A++W AK R
Sbjct: 234 VTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSR-- 291
Query: 275 GISGDKNVKFAYPSNIRRTVKPPLPLGYWGNGCIPLYAQLSAKELV--EQPLWKTAELIK 332
DK F +P + R KPP+P Y+GN C+ A ++ L+ ++ A+LI
Sbjct: 292 ---NDKLQLFGFPIDRRARXKPPIPTAYFGN-CVGGCAAIAKTNLLIGKEGFITAAKLIG 347
Query: 333 KSKSNANDEYVHSFI-----DFQELYYEDGITAGREVSAFTDWRHVGHTSVDFGWGGP 385
++ +Y + F +L E T VS R DFGWG P
Sbjct: 348 ENLHKTLTDYKDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFY---DXDFGWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 97/410 (23%), Positives = 154/410 (37%), Gaps = 42/410 (10%)
Query: 5 IIETKQILPSTPPFKDEGEHELPLSHLDNDPNIRSFTFRYIRVYTASADIDRHPF----- 59
+IE Q++PS E LPL++ D+ + R R+ I R F
Sbjct: 4 VIEQCQVVPSP---GSATELTLPLTYFDH---VWLAFHRXRRILFYKLPISRPDFVQTII 57
Query: 60 DVIANSLSLALVHYYPLAGTLRPVGKSSSNQRLSLFCQSGQTFPLVNATADCTXXXXXXX 119
+ +SLSL L +Y PLAG + S L + + + D
Sbjct: 58 PTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYHP 117
Query: 120 XXXXEQLVPAPTLEE-------GLANPCILQVTVFKCGGYTLGTAVHHSMCDGMGATLVF 172
+ P L E LA +QVT+F G ++G HH DG
Sbjct: 118 RNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFV 177
Query: 173 GAAGELAR--GATKISVQ---PVWDRATLLGPRHPPRAEGPVLEFLGTEKGFKPYSHDVG 227
A L + G + P +DR+ + + P + K S V
Sbjct: 178 RAWALLNKFGGDEQFLANEFIPFYDRSVI---KDPNGVGXSIWNEXKKYKHXXKXSDVVT 234
Query: 228 P--VVRQCFDVADECLDGLKDALFDECG--MKFTTFEAFGAFVWRAKVRCSGISG---DK 280
P VR F + + LK+ + T+F A+VW ++ +G D+
Sbjct: 235 PPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDE 294
Query: 281 NVK--FAYPSNIRRTVKPPLPLGYWGNGCIPLYAQLSAKELVEQPLWKTA-ELIKKS--K 335
N F ++ R PPLP Y+GN + A+ +L + + A ELI ++ K
Sbjct: 295 NGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRK 354
Query: 336 SNANDEYVHSFIDFQELYYEDGITAGREVSAFTDWRHVGHTSVDFGWGGP 385
++E++ S F+E D + A R +S + + + DFGWG P
Sbjct: 355 RXKDEEWILSGSWFKEY---DKVDAKRSLSVAGSPK-LDLYAADFGWGRP 400
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 57 HPFDVIANSLSLALVHYYPLAGTLRPVGKSSSNQRLS--LFCQSGQT 101
H +AN LSL +H+ L R VGK+S + L+ L C++G T
Sbjct: 30 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 76
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 57 HPFDVIANSLSLALVHYYPLAGTLRPVGKSSSNQRLS--LFCQSGQT 101
H +AN LSL +H+ L R VGK+S + L+ L C++G T
Sbjct: 45 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 91
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 57 HPFDVIANSLSLALVHYYPLAGTLRPVGKSSSNQRLS--LFCQSGQT 101
H +AN LSL +H+ L R VGK+S + L+ L C++G T
Sbjct: 45 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 91
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 57 HPFDVIANSLSLALVHYYPLAGTLRPVGKSSSNQRLS--LFCQSGQT 101
H +AN LSL +H+ L R VGK+S + L+ L C++G T
Sbjct: 23 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 57 HPFDVIANSLSLALVHYYPLAGTLRPVGKSSSNQRLS--LFCQSGQT 101
H +AN LSL +H+ L R VGK+S + L+ L C++G T
Sbjct: 23 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 57 HPFDVIANSLSLALVHYYPLAGTLRPVGKSSSNQRLS--LFCQSGQT 101
H +AN LSL +H+ L R VGK+S + L+ L C++G T
Sbjct: 26 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 72
>pdb|2Y35|A Chain A, Crystal Structure Of Xrn1-Substrate Complex
Length = 1140
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 147 FKCGGYTLGTAVHHSMCDGMGATLVFGAAGELARGATKISVQPVWDRATLL--GPRHPPR 204
F T GT + +G+ A L TKIS P+W R T++ G P
Sbjct: 127 FDSNCITPGTEFMVRLQEGLRAFL-----------KTKISTDPLWQRCTVILSGQEAPGE 175
Query: 205 AEGPVLEFLGTEKGFKPYSHDVGPVVRQCFDVADECL 241
E +++++ K +P D P R C D L
Sbjct: 176 GEHKIMDYIRYMKT-QP---DYDPNTRHCLYGLDAAL 208
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 26/129 (20%)
Query: 295 KPPLPLGYWGNGCIPLYAQLSAKELVEQPLWKTAELIKKSKSNANDEYVHSFIDFQELYY 354
+ P PL +G G + ELV L + EL S +++ EYV
Sbjct: 36 RSPQPLSGFGTGIV------VQPELVHYLLEQGVELDSISVPSSSMEYV----------- 78
Query: 355 EDGITAGREVSAFTDWRHVGHTSVDFGWGGPVIMFP-----LSKNLVGSKEPCYFLPPRK 409
D +T R S DWR + S+ +GG +F SK LVG + + R
Sbjct: 79 -DALTGERVGSVPADWRFTSYDSI---YGGLYELFGPERYHTSKCLVGLSQDSETVQMRF 134
Query: 410 KDGFTLQVN 418
DG + N
Sbjct: 135 SDGTKAEAN 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,485,993
Number of Sequences: 62578
Number of extensions: 557042
Number of successful extensions: 1021
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 995
Number of HSP's gapped (non-prelim): 26
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)