Query 013439
Match_columns 443
No_of_seqs 187 out of 1347
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 4E-132 9E-137 949.2 28.8 433 1-433 1-436 (443)
2 PLN00221 tubulin alpha chain; 100.0 2E-111 4E-116 868.3 31.7 431 1-431 1-441 (450)
3 PTZ00010 tubulin beta chain; P 100.0 4E-110 9E-115 859.2 31.4 440 1-440 1-440 (445)
4 PTZ00335 tubulin alpha chain; 100.0 4E-110 1E-114 857.9 31.7 429 1-429 1-439 (448)
5 PLN00220 tubulin beta chain; P 100.0 9E-109 2E-113 851.0 32.1 429 1-429 1-429 (447)
6 PLN00222 tubulin gamma chain; 100.0 1E-106 3E-111 832.5 30.9 429 1-430 2-446 (454)
7 cd02188 gamma_tubulin Gamma-tu 100.0 1E-106 2E-111 829.4 29.1 420 2-422 1-431 (431)
8 cd02187 beta_tubulin The tubul 100.0 4E-106 8E-111 827.0 31.6 424 2-425 1-424 (425)
9 cd02186 alpha_tubulin The tubu 100.0 2E-106 5E-111 829.7 29.5 424 2-425 1-434 (434)
10 PTZ00387 epsilon tubulin; Prov 100.0 2E-105 4E-110 824.5 31.2 417 1-428 1-452 (465)
11 KOG1374 Gamma tubulin [Cytoske 100.0 1E-101 3E-106 740.2 25.2 426 1-427 2-441 (448)
12 cd02190 epsilon_tubulin The tu 100.0 3.2E-98 7E-103 757.0 27.5 379 2-425 1-379 (379)
13 cd02189 delta_tubulin The tubu 100.0 6.7E-98 1E-102 769.4 30.4 410 4-423 2-445 (446)
14 cd06059 Tubulin The tubulin su 100.0 5.6E-90 1.2E-94 701.0 28.5 381 3-424 1-382 (382)
15 KOG1376 Alpha tubulin [Cytoske 100.0 8.3E-88 1.8E-92 643.4 15.9 404 1-419 1-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 5.9E-68 1.3E-72 509.6 15.3 350 42-431 6-356 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 2.7E-64 5.9E-69 503.7 23.1 327 3-371 1-328 (328)
18 cd06060 misato Human Misato sh 100.0 1.8E-52 3.9E-57 431.5 28.9 408 2-424 1-493 (493)
19 PF00091 Tubulin: Tubulin/FtsZ 100.0 9.4E-51 2E-55 382.6 8.0 215 3-223 1-215 (216)
20 smart00864 Tubulin Tubulin/Fts 100.0 1.6E-36 3.4E-41 280.7 7.5 185 49-244 3-192 (192)
21 KOG2530 Members of tubulin/Fts 100.0 6.1E-34 1.3E-38 279.7 11.5 256 1-275 1-341 (483)
22 cd02202 FtsZ_type2 FtsZ is a G 100.0 2.9E-31 6.3E-36 265.9 12.1 214 1-260 1-226 (349)
23 cd02191 FtsZ FtsZ is a GTPase 99.9 2.4E-26 5.1E-31 226.2 12.5 205 4-258 3-207 (303)
24 TIGR00065 ftsZ cell division p 99.9 4.2E-25 9E-30 220.8 11.6 206 4-259 20-225 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 1.7E-24 3.6E-29 214.0 11.5 208 4-260 3-210 (304)
26 PF03953 Tubulin_C: Tubulin C- 99.9 5.4E-24 1.2E-28 183.6 9.9 123 261-383 1-126 (126)
27 PRK13018 cell division protein 99.9 5.5E-23 1.2E-27 206.3 12.1 205 4-258 31-235 (378)
28 PF14881 Tubulin_3: Tubulin do 99.9 5.7E-22 1.2E-26 180.4 11.9 117 114-242 57-180 (180)
29 PRK09330 cell division protein 99.8 4.7E-21 1E-25 192.5 10.6 208 3-259 15-222 (384)
30 PF10644 Misat_Tub_SegII: Misa 99.6 1.1E-15 2.3E-20 129.4 4.1 66 2-73 1-70 (115)
31 COG0206 FtsZ Cell division GTP 99.3 5.9E-12 1.3E-16 124.4 10.0 147 106-261 75-221 (338)
32 smart00865 Tubulin_C Tubulin/F 98.4 1.3E-07 2.9E-12 80.0 3.0 114 246-382 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 97.3 0.0038 8.3E-08 63.1 13.7 102 93-195 101-220 (345)
34 PF12953 DUF3842: Domain of un 67.1 11 0.00025 32.2 4.8 43 141-197 6-49 (131)
35 PF06908 DUF1273: Protein of u 66.4 22 0.00048 32.4 6.9 109 112-239 27-136 (177)
36 PRK14484 phosphotransferase ma 64.6 6.4 0.00014 33.7 2.9 43 113-158 41-83 (124)
37 PLN02847 triacylglycerol lipas 59.4 9.9 0.00021 41.0 3.8 62 103-168 224-287 (633)
38 PF03610 EIIA-man: PTS system 59.3 11 0.00025 31.3 3.5 34 111-144 38-71 (116)
39 TIGR00824 EIIA-man PTS system, 59.1 30 0.00064 29.0 6.0 33 112-144 40-72 (116)
40 cd00006 PTS_IIA_man PTS_IIA, P 50.4 34 0.00074 28.8 5.0 33 112-144 39-71 (122)
41 PRK09461 ansA cytoplasmic aspa 50.4 52 0.0011 33.1 7.1 95 108-209 63-157 (335)
42 PF03283 PAE: Pectinacetyleste 41.9 43 0.00094 34.1 5.1 52 105-161 132-183 (361)
43 PRK13660 hypothetical protein; 41.1 1.6E+02 0.0035 26.9 8.2 111 112-240 27-137 (182)
44 cd00741 Lipase Lipase. Lipase 41.0 45 0.00097 28.9 4.5 52 103-158 1-52 (153)
45 cd00411 Asparaginase Asparagin 40.9 93 0.002 31.1 7.2 94 108-209 60-155 (323)
46 PF00710 Asparaginase: Asparag 39.8 92 0.002 31.0 7.0 94 108-209 54-148 (313)
47 PF01764 Lipase_3: Lipase (cla 36.6 10 0.00023 32.1 -0.3 55 103-161 36-91 (140)
48 cd00519 Lipase_3 Lipase (class 35.0 45 0.00097 31.1 3.7 58 99-160 97-154 (229)
49 TIGR02364 dha_pts dihydroxyace 33.9 40 0.00086 28.8 2.9 41 113-156 41-83 (125)
50 TIGR02153 gatD_arch glutamyl-t 32.3 1.4E+02 0.0031 30.9 7.1 91 108-205 120-211 (404)
51 TIGR00519 asnASE_I L-asparagin 31.8 1.5E+02 0.0032 29.9 7.0 95 108-209 59-158 (336)
52 PF02879 PGM_PMM_II: Phosphogl 31.2 39 0.00085 27.3 2.3 27 131-157 20-46 (104)
53 COG1528 Ftn Ferritin-like prot 30.3 28 0.00061 31.3 1.4 36 372-407 95-132 (167)
54 smart00870 Asparaginase Aspara 29.2 1.7E+02 0.0037 29.2 7.0 96 108-209 57-155 (323)
55 PRK15088 PTS system mannose-sp 27.7 1.3E+02 0.0029 30.0 5.9 34 111-144 40-73 (322)
56 COG1929 Glycerate kinase [Carb 26.0 1.6E+02 0.0034 30.0 5.9 102 89-208 196-301 (378)
57 COG0159 TrpA Tryptophan syntha 25.8 2.2E+02 0.0047 27.8 6.6 74 118-211 161-240 (265)
58 KOG3178 Hydroxyindole-O-methyl 25.2 76 0.0017 32.0 3.5 40 123-167 168-207 (342)
59 PF02353 CMAS: Mycolic acid cy 25.1 98 0.0021 30.2 4.3 64 98-168 28-92 (273)
60 COG0572 Udk Uridine kinase [Nu 24.2 78 0.0017 29.9 3.2 27 135-162 9-35 (218)
61 PRK04183 glutamyl-tRNA(Gln) am 23.6 2.6E+02 0.0056 29.2 7.2 90 108-205 133-223 (419)
62 PF12210 Hrs_helical: Hepatocy 23.2 1.2E+02 0.0027 24.6 3.7 57 367-426 27-90 (96)
63 COG2893 ManX Phosphotransferas 23.1 2.4E+02 0.0053 24.6 5.9 63 99-166 29-91 (143)
64 PF01713 Smr: Smr domain; Int 22.5 2.9E+02 0.0062 21.2 5.8 52 115-169 10-67 (83)
65 COG4474 Uncharacterized protei 22.4 2.5E+02 0.0055 25.4 5.8 92 104-202 15-108 (180)
66 PF13508 Acetyltransf_7: Acety 22.2 1E+02 0.0022 23.1 3.0 23 144-166 40-62 (79)
67 PRK15414 phosphomannomutase Cp 21.9 5.5E+02 0.012 26.9 9.5 94 112-206 151-248 (456)
68 COG1109 {ManB} Phosphomannomut 21.4 3.5E+02 0.0076 28.4 7.9 90 112-206 158-250 (464)
69 cd05801 PGM_like3 This bacteri 21.1 1.4E+02 0.0031 31.9 5.0 46 111-156 188-234 (522)
70 PTZ00489 glutamate 5-kinase; P 20.8 3.9E+02 0.0084 25.9 7.5 49 155-205 87-135 (264)
71 PF08259 Periviscerokin: Periv 20.7 43 0.00092 16.1 0.4 8 255-262 3-10 (11)
72 PLN02371 phosphoglucosamine mu 20.1 2.3E+02 0.0049 30.9 6.3 71 130-206 261-337 (583)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=4e-132 Score=949.23 Aligned_cols=433 Identities=53% Similarity=1.019 Sum_probs=423.0
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccC
Q 013439 1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGP 80 (443)
Q Consensus 1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~ 80 (443)
||||||||+||||||||.+||+++|+||||.++|.+.+..+...++.++||+|+..++|+||||+|||||+||+.+++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 99999999999999999999999999999999999877777677899999999999999999999999999999999999
Q ss_pred CCcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcC
Q 013439 81 YGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYP 160 (443)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp 160 (443)
++.+|+|++++.|++|+|||||+|+|+.|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|||+|+++||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccc
Q 013439 161 DRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 240 (443)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (443)
||.+.+|+|+|.++.++++|||||++|++++|.|+||+++++||++|+++|.+.+++.+|+|.++|++||++++++|.++
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccccC
Q 013439 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGK 320 (443)
Q Consensus 241 r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (443)
||||++|.||++|.++|+||||+||+.++|+|+..+.+..+++.|+.++++++|.|+|+|++|+|+.|+|++++.++||+
T Consensus 241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~ 320 (443)
T COG5023 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD 320 (443)
T ss_pred ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhccCCcceecccCCCcceeeccCCC---CCCCcceeeccCChhhHHHHHHHHHHHHhhccccccccc
Q 013439 321 MSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPP---TGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHW 397 (443)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflh~ 397 (443)
+.++++++++.+++.|+..+|++|+|+++++++|+++| ...+.++|+|+|+|+|.+.|+++.++|++||+|||||||
T Consensus 321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw 400 (443)
T COG5023 321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW 400 (443)
T ss_pred CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999998 677899999999999999999999999999999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 013439 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQEAAAEEE 433 (443)
Q Consensus 398 Y~~~G~ee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~ 433 (443)
|.++||||+||.||+++|+++.++|++++++.++++
T Consensus 401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~ 436 (443)
T COG5023 401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDD 436 (443)
T ss_pred HhhccCcccchhhHHHHHHHHHHHHHHhccccccch
Confidence 999999999999999999999999999987765533
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=2e-111 Score=868.27 Aligned_cols=431 Identities=42% Similarity=0.842 Sum_probs=407.5
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcc--cccccccccccCCCCCCCCcceeecCCCCCccccccc
Q 013439 1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQ--VQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRT 78 (443)
Q Consensus 1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~ 78 (443)
||||||||+||||||||.+||+++|+||+++++|....+.. ...+..++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999887643322 1345778999999999999999999999999999999
Q ss_pred cCCCcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhh
Q 013439 79 GPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREE 158 (443)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~ 158 (443)
++++++|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||+||||+++||++||||||+|++|+|+|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcc
Q 013439 159 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTC 238 (443)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (443)
||++.+.+++|+|+...+++++++||++|++++|.+++|+++++||++|+++|.+.++++.|+|.++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999998667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccc
Q 013439 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFR 318 (443)
Q Consensus 239 ~~r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (443)
++||||.+|.||++++++|||||++||++++++|+.......+++++|.+|++.+|+++++++.++|..|+||++++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999876666778899999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCC--------CCCcceeeccCChhhHHHHHHHHHHHHhhcc
Q 013439 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPT--------GLSMSSTFMGNSTSIQEMFRRVSEQFTVMFK 390 (443)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 390 (443)
|++.++++.+.+.+++.++.+.|++|+|+++++++|.++|. +.+.++++++|+|+|..+|+++.++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888889999999999999999988764 3457899999999999999999999999999
Q ss_pred cccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 013439 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAAAE 431 (443)
Q Consensus 391 krAflh~Y~~~G~ee~eF~ea~~~l~~l~~~Y~~~~~~~~~ 431 (443)
||||||||+++||||+||.||+++|++|+++|+++.+...+
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~ 441 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAE 441 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999765544
No 3
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=4.1e-110 Score=859.21 Aligned_cols=440 Identities=87% Similarity=1.413 Sum_probs=416.5
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccC
Q 013439 1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGP 80 (443)
Q Consensus 1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~ 80 (443)
|||||+||+||||||||.+||+++++||+++++|.+..+.+...+..++||+|+.+++|+||+|+||+||++|+.++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 99999999999999999999999999999998887655443334577899999999999999999999999999998888
Q ss_pred CCcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcC
Q 013439 81 YGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYP 160 (443)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp 160 (443)
++.+|++++++.+++|+|||||+|||..|++..++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccc
Q 013439 161 DRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 240 (443)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (443)
++.+.+++|+|+...+++++++||++|++++|.+++|++++|||++|+++|.+.++++.|+|.++|++||++|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~ 240 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccce
Confidence 99999999999876789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccccC
Q 013439 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGK 320 (443)
Q Consensus 241 r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (443)
||||..|.|+.+++++|||||++||++++++|+.......+.++++.+|++++|+++++++.++|.+|+|||+++++||+
T Consensus 241 Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~ 320 (445)
T PTZ00010 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGR 320 (445)
T ss_pred ecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCC
Confidence 99999999999999999999999999999999988666678889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCCCCCcceeeccCChhhHHHHHHHHHHHHhhcccccccccccC
Q 013439 321 MSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTG 400 (443)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflh~Y~~ 400 (443)
+.++++.+.+.+++.++.+.|++|+|+++++++|+++|...++++++++|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~ 400 (445)
T PTZ00010 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTG 400 (445)
T ss_pred CCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhc
Confidence 99999999999888888999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhh
Q 013439 401 EGMDEMEFTEAESNMNDLVSEYQQYQEAAAEEEEEYDEEA 440 (443)
Q Consensus 401 ~G~ee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~~ 440 (443)
+||||+||.||+++|++|+++|+++.+...+.+.++||++
T Consensus 401 eGmee~ef~EA~~~l~~li~~Y~~~~~~~~~~~~~~~~~~ 440 (445)
T PTZ00010 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEE 440 (445)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhhccccccccccchh
Confidence 9999999999999999999999999776544444455544
No 4
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=4.5e-110 Score=857.86 Aligned_cols=429 Identities=42% Similarity=0.860 Sum_probs=406.1
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcc--cccccccccccCCCCCCCCcceeecCCCCCccccccc
Q 013439 1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQ--VQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRT 78 (443)
Q Consensus 1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~ 78 (443)
|||||+||+||||||||.+||+++|+||+++++|.+..+.. ...+..++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999887643322 1245778999999999999999999999999999999
Q ss_pred cCCCcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhh
Q 013439 79 GPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREE 158 (443)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~ 158 (443)
++++.+|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcc
Q 013439 159 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTC 238 (443)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (443)
||++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|+++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999998667899999999999999999999999999999999999999998899999999999999999999
Q ss_pred cccCCCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccc
Q 013439 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFR 318 (443)
Q Consensus 239 ~~r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (443)
++||||..+.|+++++++|||||++||++++++|+.+.....+++++|.+|++++|+++++++.++|.+++||++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999886666778899999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCC--------CCCcceeeccCChhhHHHHHHHHHHHHhhcc
Q 013439 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPT--------GLSMSSTFMGNSTSIQEMFRRVSEQFTVMFK 390 (443)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 390 (443)
|++.+.++.+.+.+++.++.+.|++|+|+++++++|+++|. ..++++++++|+|+|..+|+++.++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988889999999999999999988764 2467899999999999999999999999999
Q ss_pred cccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 013439 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAA 429 (443)
Q Consensus 391 krAflh~Y~~~G~ee~eF~ea~~~l~~l~~~Y~~~~~~~ 429 (443)
||||||||+++||||+||.||+++|++|+++|+++.+..
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~ 439 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 439 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999996544
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=9.5e-109 Score=851.05 Aligned_cols=429 Identities=93% Similarity=1.485 Sum_probs=410.0
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccC
Q 013439 1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGP 80 (443)
Q Consensus 1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~ 80 (443)
|||||+||+||||||||.+||+++++||+++++|.+..+.+...+..++||+|+.+++|+||+|+||+||++|++++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 99999999999999999999999999999998887755444334577899999999999999999999999999999988
Q ss_pred CCcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcC
Q 013439 81 YGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYP 160 (443)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp 160 (443)
++.+|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccc
Q 013439 161 DRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 240 (443)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (443)
++.+++++|+|++..+++++++||++|+|++|.+++|+++++||++|+++|.+.+++..++|.++|++||+.++++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~sl 240 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhh
Confidence 99999999999877889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccccC
Q 013439 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGK 320 (443)
Q Consensus 241 r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (443)
||||.++.++.+++++|||||++||+.++++|+.......++++++.+++++++.++++++.+++.+|+||++++++||+
T Consensus 241 RFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~ 320 (447)
T PLN00220 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (447)
T ss_pred ccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCC
Confidence 99999999999999999999999999999999987666678889999999999999999998888899999999999999
Q ss_pred CChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCCCCCcceeeccCChhhHHHHHHHHHHHHhhcccccccccccC
Q 013439 321 MSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTG 400 (443)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflh~Y~~ 400 (443)
+.+.++.+.+.+++.++.+.|++|+|+++++++|+++|.+.++++++|+|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~ 400 (447)
T PLN00220 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (447)
T ss_pred CCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 99999999999888888899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 013439 401 EGMDEMEFTEAESNMNDLVSEYQQYQEAA 429 (443)
Q Consensus 401 ~G~ee~eF~ea~~~l~~l~~~Y~~~~~~~ 429 (443)
+||||+||.||+++|++|+++|+++.+..
T Consensus 401 ~Gmee~ef~ea~~~l~~li~~Y~~~~~~~ 429 (447)
T PLN00220 401 EGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (447)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999997653
No 6
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=1.3e-106 Score=832.54 Aligned_cols=429 Identities=36% Similarity=0.687 Sum_probs=400.3
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccC
Q 013439 1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGP 80 (443)
Q Consensus 1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~ 80 (443)
|||||+||+||||||||.+||+++|+||+++++|.+..+.+...+..++||+|+.+++|+||||+||+||++|++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 69999999999999999999999999999998887654433334677899999999999999999999999999999888
Q ss_pred CCcccCCCccccccC--CCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhh
Q 013439 81 YGQIFRPDNFVFGQN--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREE 158 (443)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~ 158 (443)
++.+|++++++++++ |+||||++||+ .|++..|+++|+||+++|.||++|||+++||++||||||+|++|+|+|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 889999999999986 69999999966 799999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEEecCCC-CCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCc
Q 013439 159 YPDRMMMTFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVT 237 (443)
Q Consensus 159 yp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (443)
||++.+++++|+|+.. .+++++++||++|+|++|.+++|+++++||++|+++|.+.++++.|+|.++|++||++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 9999999999999853 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccHHhhhhcccccCCccccccccccccccc-ccccccCCHHHHHhhcccCCCcccccCCCC-----Ccce
Q 013439 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARG-SQQYRALTIPELTQQMWDSKNMMCAADPRH-----GRYL 311 (443)
Q Consensus 238 ~~~r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~-----~~~l 311 (443)
+++||||..|.|+++++++|||||++||++++++|+.... ...++..++.+++++++++++++..++|.+ |+||
T Consensus 241 ~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~l 320 (454)
T PLN00222 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYI 320 (454)
T ss_pred cccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchH
Confidence 9999999999999999999999999999999999997642 345677899999999999999999888877 9999
Q ss_pred eeecccccCCChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCC---CCCcceeeccCChhhHHHHHHHHHHHHhh
Q 013439 312 TASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPT---GLSMSSTFMGNSTSIQEMFRRVSEQFTVM 388 (443)
Q Consensus 312 s~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~Nst~i~~~l~~l~~~~~~m 388 (443)
|+++++||++.+.++.+.+.+++.++.+.|++|+|+++++++|.++|. +.+.++++|+|+|+|.++|+++.++|++|
T Consensus 321 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~m 400 (454)
T PLN00222 321 SILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKL 400 (454)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888999999999999999998884 46789999999999999999999999999
Q ss_pred cccccccccccCCCCC----hhhHHHHHHHHHHHHHHHHHHHHhhh
Q 013439 389 FKRKAFLHWYTGEGMD----EMEFTEAESNMNDLVSEYQQYQEAAA 430 (443)
Q Consensus 389 ~~krAflh~Y~~~G~e----e~eF~ea~~~l~~l~~~Y~~~~~~~~ 430 (443)
|+||||||||+++||+ ++||.||+++|++|+++|+++....+
T Consensus 401 f~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y 446 (454)
T PLN00222 401 RKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDY 446 (454)
T ss_pred HhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999993 89999999999999999999864443
No 7
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=9.9e-107 Score=829.35 Aligned_cols=420 Identities=38% Similarity=0.755 Sum_probs=397.1
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccCC
Q 013439 2 REILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPY 81 (443)
Q Consensus 2 ~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~ 81 (443)
||||+||+||||||||.+||+++|+||+++++|.+..+.+...+..++||+|+.+++|+||||+||+||++|++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 79999999999999999999999999999988876544333356778999999999999999999999999999999888
Q ss_pred CcccCCCccccccC--CCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhc
Q 013439 82 GQIFRPDNFVFGQN--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEY 159 (443)
Q Consensus 82 ~~~~~~~~~~~~~~--~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~y 159 (443)
+.+|+|++++.+++ |+||||++||+ .|++..|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 88999999999987 99999999976 6999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEEecCCCC-CcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcc
Q 013439 160 PDRMMMTFSVFPSPKV-SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTC 238 (443)
Q Consensus 160 p~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (443)
|++.+++++|+|+... +++++++||++|+|++|.+++|+++++||++|.++|.+.+++..|+|.++|++||++|+++|+
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9999999999998543 588999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccHHhhhhcccccCCccccccccccccccc-ccccccCCHHHHHhhcccCCCcccccCC-CCCcceeeecc
Q 013439 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARG-SQQYRALTIPELTQQMWDSKNMMCAADP-RHGRYLTASAM 316 (443)
Q Consensus 239 ~~r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~~~ 316 (443)
++||||..|.|+.+++++|||||++||++++++|+.... ...++..+|.+|++.++++.++|+.+++ .+++|||++++
T Consensus 240 ~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~ 319 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNI 319 (431)
T ss_pred ceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHH
Confidence 999999999999999999999999999999999998866 4667889999999999999999999998 88999999999
Q ss_pred cccCCChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCC---CCCcceeeccCChhhHHHHHHHHHHHHhhccccc
Q 013439 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPT---GLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKA 393 (443)
Q Consensus 317 ~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krA 393 (443)
+||++.+.++.+.+.+++.+..+.|++|+|+++++++|+++|. +.+.++++++|+|+|.++|+++.+||++||+|||
T Consensus 320 ~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krA 399 (431)
T cd02188 320 IQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRA 399 (431)
T ss_pred HcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999988888889999999999999988874 4578999999999999999999999999999999
Q ss_pred ccccccCCCCC---hhhHHHHHHHHHHHHHHH
Q 013439 394 FLHWYTGEGMD---EMEFTEAESNMNDLVSEY 422 (443)
Q Consensus 394 flh~Y~~~G~e---e~eF~ea~~~l~~l~~~Y 422 (443)
|||||+++||| |+||.||+++|++|+++|
T Consensus 400 flH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 400 FLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred hhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999998
No 8
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=3.5e-106 Score=827.02 Aligned_cols=424 Identities=85% Similarity=1.396 Sum_probs=404.6
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccCC
Q 013439 2 REILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPY 81 (443)
Q Consensus 2 ~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~ 81 (443)
||||+||+||||||||.+||+++|+||+++++|.+....+...+..++||+|+.+++|+||+|+||+||++|++++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 79999999999999999999999999999988876444333335678999999999999999999999999999988888
Q ss_pred CcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCC
Q 013439 82 GQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPD 161 (443)
Q Consensus 82 ~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~ 161 (443)
+.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++++|+|+|+||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCccccc
Q 013439 162 RMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLR 241 (443)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (443)
+.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 99999999998666799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccccCC
Q 013439 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKM 321 (443)
Q Consensus 242 ~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (443)
|||..|.|+.+++++|||||++||++++++|+.......+.++++.+|++++|++++++..++|.+++|||+++++||++
T Consensus 241 fpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~ 320 (425)
T cd02187 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRV 320 (425)
T ss_pred cCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999876666778899999999999999999888899999999999999999
Q ss_pred ChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCCCCCcceeeccCChhhHHHHHHHHHHHHhhcccccccccccCC
Q 013439 322 STKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGE 401 (443)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflh~Y~~~ 401 (443)
.+.++.+.+.+++.+..+.|++|+|+++++++|+++|.+.++++++++|+|+|.++|+++.++|++||+||||||||+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~ 400 (425)
T cd02187 321 SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGE 400 (425)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhcc
Confidence 99999999999988889999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q 013439 402 GMDEMEFTEAESNMNDLVSEYQQY 425 (443)
Q Consensus 402 G~ee~eF~ea~~~l~~l~~~Y~~~ 425 (443)
||||+||.||+++|++++++|+++
T Consensus 401 G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 401 GMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999986
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=2.3e-106 Score=829.74 Aligned_cols=424 Identities=42% Similarity=0.848 Sum_probs=401.7
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcc--cccccccccccCCCCCCCCcceeecCCCCCcccccccc
Q 013439 2 REILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQ--VQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTG 79 (443)
Q Consensus 2 ~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~ 79 (443)
||||+||+||||||||.+||+++|+||+++++|.+..+.. ...+..++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999999887644322 23457889999999999999999999999999999988
Q ss_pred CCCcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhc
Q 013439 80 PYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEY 159 (443)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~y 159 (443)
+++.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCccc
Q 013439 160 PDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCC 239 (443)
Q Consensus 160 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 239 (443)
|++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|+++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999986667899999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeeccccc
Q 013439 240 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRG 319 (443)
Q Consensus 240 ~r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 319 (443)
+||||..+.|+++++++|||||++||++++++|+.+.....+++++|.+|++++|+++++|+.+++..++||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999998766667788999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCC--------CCCcceeeccCChhhHHHHHHHHHHHHhhccc
Q 013439 320 KMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPT--------GLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKR 391 (443)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~k 391 (443)
++.++++.+.+.+++.++.+.|++|+|+++++++|+++|. ..++++++++|+|+|.++|+++.++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988888888999999999999999998774 24578999999999999999999999999999
Q ss_pred ccccccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 013439 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425 (443)
Q Consensus 392 rAflh~Y~~~G~ee~eF~ea~~~l~~l~~~Y~~~ 425 (443)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999873
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.8e-105 Score=824.46 Aligned_cols=417 Identities=34% Similarity=0.680 Sum_probs=392.4
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcC-CCCCCCCCCCcccccccccccccCCC-----CC--CCCcceeecCCCCCc
Q 013439 1 MREILHIQAGQCGNQIGGKFWEVVCDEHG-IDPTGNYVGNSQVQLERVNVYFNEAS-----GG--RHVPRAVLMDLEPGT 72 (443)
Q Consensus 1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~F~e~~-----~~--~~~pR~l~vD~e~~~ 72 (443)
|||||+||+||||||||.+||+++|+||+ ++++|.+ ++..++||++.. .+ +|+||||+||+||++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 6776654 356789998532 23 499999999999999
Q ss_pred cccccccCCCcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHH
Q 013439 73 MDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLI 152 (443)
Q Consensus 73 i~~~~~~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~ll 152 (443)
|++++.++++.+|++++++++++|+||||++|||..|+++.|+++|+||+++|+||+||||+++||++||||||+|+.|+
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCC-------------
Q 013439 153 SKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTN------------- 219 (443)
Q Consensus 153 e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~------------- 219 (443)
|.|+|+||++.+++++|||+ ..++++++|||++|+|++|.+++|+++++||++|+++|.+.+++..
T Consensus 154 e~l~d~y~~~~~~~~~V~P~-~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQ 232 (465)
T ss_pred HHHHHhcccCceeeeEecCC-CCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccc
Confidence 99999999999999999998 5688999999999999999999999999999999999988777653
Q ss_pred --------------CCcccccHHHHHhhccCcccccCCCCCcccHHhhhhcccccCCcccccccccccccccccccccCC
Q 013439 220 --------------PSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALT 285 (443)
Q Consensus 220 --------------~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t 285 (443)
+.|+++|++||++|+++|+++||||.+|.|+++++++|||||++||++++++|+.......+...+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s 312 (465)
T PTZ00387 233 PHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRR 312 (465)
T ss_pred ccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCC
Confidence 789999999999999999999999999999999999999999999999999999876666678899
Q ss_pred HHHHHhhcccCCCcccccCCCCCcceeeecccccCCChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCCCCCcce
Q 013439 286 IPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSS 365 (443)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~ 365 (443)
|.+|++.+|+++++|+.+++.+++|||+++++||++.+.++.+.+.+++. .+.|++|+|+++++++|+++|.+.+.++
T Consensus 313 ~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~~~s~ 390 (465)
T PTZ00387 313 LDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQPYSL 390 (465)
T ss_pred HHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCCceeE
Confidence 99999999999999999999999999999999999889999988888763 4899999999999999999999899999
Q ss_pred eeccCChhhHHHHHHHHHHHHhhcccccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 013439 366 TFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEA 428 (443)
Q Consensus 366 ~~l~Nst~i~~~l~~l~~~~~~m~~krAflh~Y~~~G~ee~eF~ea~~~l~~l~~~Y~~~~~~ 428 (443)
++++|+|+|.++|++++++|++||+||||||||+ +|||++||.||+++|++++++|+++...
T Consensus 391 ~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~ 452 (465)
T PTZ00387 391 LCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452 (465)
T ss_pred EEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999 7999999999999999999999999744
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=1.3e-101 Score=740.18 Aligned_cols=426 Identities=37% Similarity=0.728 Sum_probs=399.7
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccC
Q 013439 1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGP 80 (443)
Q Consensus 1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~ 80 (443)
||||||||+||||||||.+||+++|.||||+++|......++..++.++||++..++.|+||||+||+||+||+.+..++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 68999999999999999999999999999999999766666667889999999999999999999999999999999999
Q ss_pred CCcccCCCccccc--cCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhh
Q 013439 81 YGQIFRPDNFVFG--QNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREE 158 (443)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~ 158 (443)
++++|+++|++.. ..|+|||||.||. .|++..|+++|.|+|++|.||+|.||+++||++||||||+||.|+|+|+|.
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCcccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 9999999998774 4689999999986 599999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEEecCC-CCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCc
Q 013439 159 YPDRMMMTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVT 237 (443)
Q Consensus 159 yp~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (443)
||||.+.+++|||.. ..+|++|||||++|+|.+|.+.+|+++++||.+|.++|.+.+.+++|+|.++|++||.++++.|
T Consensus 161 ypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st 240 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAST 240 (448)
T ss_pred chhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999984 3789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccHHhhhhcccccCCccccccccccccccccc--ccccCCHHHHHhhcccCCCcccccCC---CCCccee
Q 013439 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQ--QYRALTIPELTQQMWDSKNMMCAADP---RHGRYLT 312 (443)
Q Consensus 238 ~~~r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~--~~~~~t~~~l~~~~~~~~~~~~~~~~---~~~~~ls 312 (443)
.++|+||+.+.+|..+...|+|+|++||+.+++.|++.+... .+++.++.+.+++++.|+++|++..+ ....|++
T Consensus 241 ~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~s 320 (448)
T KOG1374|consen 241 TTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYIS 320 (448)
T ss_pred ccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHh
Confidence 999999999999999999999999999999999999987644 35888999999999999999988765 3347889
Q ss_pred eecccccCCChHHHHHHHHHhhccCCcceecccCCCcceeeccCCC---CCCCcceeeccCChhhHHHHHHHHHHHHhhc
Q 013439 313 ASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPP---TGLSMSSTFMGNSTSIQEMFRRVSEQFTVMF 389 (443)
Q Consensus 313 ~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~ 389 (443)
...++.|.+.+..+...+.+++.++...|+.|.|.++.++..+..| ..++.|+.+|+|+|+|...|++++.+||||+
T Consensus 321 i~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N~t~i~~lfe~~~~qydklr 400 (448)
T KOG1374|consen 321 ILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLANSTSIVSLFERILGQYDKLR 400 (448)
T ss_pred HHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeeccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888899999999999998876554 3568899999999999999999999999999
Q ss_pred ccccccccccCCCCChh---hHHHHHHHHHHHHHHHHHHHH
Q 013439 390 KRKAFLHWYTGEGMDEM---EFTEAESNMNDLVSEYQQYQE 427 (443)
Q Consensus 390 ~krAflh~Y~~~G~ee~---eF~ea~~~l~~l~~~Y~~~~~ 427 (443)
+||||||+|.++||+++ ||.|+++.+++++++|....+
T Consensus 401 k~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~ 441 (448)
T KOG1374|consen 401 KKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQ 441 (448)
T ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999 999999999999999998854
No 12
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=3.2e-98 Score=757.04 Aligned_cols=379 Identities=38% Similarity=0.737 Sum_probs=363.8
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccCC
Q 013439 2 REILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPY 81 (443)
Q Consensus 2 ~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~ 81 (443)
||||+||+||||||||.+||+++|+|| |+||+|+||+||++|++++.+++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh------------------------------~~pR~v~iD~e~~~i~~i~~~~~ 50 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH------------------------------LKARAVLIDMEEGVVNEILKGPL 50 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh------------------------------cCCcceeccCChhHHHHHhcCcc
Confidence 799999999999999999999999997 68999999999999999998888
Q ss_pred CcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCC
Q 013439 82 GQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPD 161 (443)
Q Consensus 82 ~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~ 161 (443)
+++|++++++.+++|+||||++||+..|+++.|+++|+||+++|+||.+|||+++||++||||||+|+.|+|.|+|+||+
T Consensus 51 ~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~ 130 (379)
T cd02190 51 RDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPE 130 (379)
T ss_pred ccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCccccc
Q 013439 162 RMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLR 241 (443)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (443)
+.+++++|+|+. .++++++|||++|+|++|.+++|+++++||++|. +|.++|++||++|+++|++.|
T Consensus 131 ~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~r 197 (379)
T cd02190 131 VYRFVTSVYPSA-DDDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMR 197 (379)
T ss_pred cceEEEeecCCC-CCCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceee
Confidence 999999999995 5888999999999999999999999999999996 599999999999999999999
Q ss_pred CCCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccccCC
Q 013439 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKM 321 (443)
Q Consensus 242 ~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (443)
|||..|.|++++.++|||||++||++++++|+.......+++.++.+|++.+++++++|+.+++.+++||++++++||++
T Consensus 198 f~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~ 277 (379)
T cd02190 198 FEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNV 277 (379)
T ss_pred cccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999876666678899999999999999999988889999999999999999
Q ss_pred ChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCCCCCcceeeccCChhhHHHHHHHHHHHHhhcccccccccccCC
Q 013439 322 STKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGE 401 (443)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflh~Y~~~ 401 (443)
.+.++.+.+.+++.+ ..|++|+|+++++++|+++|.+.++++++++|+|+|..+|+++.++|++||+||||||||+++
T Consensus 278 ~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~e 355 (379)
T cd02190 278 SVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQV 355 (379)
T ss_pred CHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCC
Confidence 999999888877655 779999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q 013439 402 GMDEMEFTEAESNMNDLVSEYQQY 425 (443)
Q Consensus 402 G~ee~eF~ea~~~l~~l~~~Y~~~ 425 (443)
||||+||.||+++|++++++|+++
T Consensus 356 G~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 356 GMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999863
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=6.7e-98 Score=769.45 Aligned_cols=410 Identities=27% Similarity=0.548 Sum_probs=377.4
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccCC--
Q 013439 4 ILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPY-- 81 (443)
Q Consensus 4 IItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~-- 81 (443)
||+||+||||||||.+||+++++||+++++|.+. ...+..++||.|..+++|+||+|+||+||++|++++.+..
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~ 77 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGG 77 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCc
Confidence 8999999999999999999999999998877653 1245678999999999999999999999999999988653
Q ss_pred CcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCC
Q 013439 82 GQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPD 161 (443)
Q Consensus 82 ~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~ 161 (443)
+++|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+||+
T Consensus 78 ~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~ 157 (446)
T cd02189 78 TWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPE 157 (446)
T ss_pred ccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCccccc
Q 013439 162 RMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLR 241 (443)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (443)
+.+++++|+|+ ..+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|.++|++||++|+++|+|.|
T Consensus 158 ~~~~~~~v~P~-~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r 236 (446)
T cd02189 158 SLLLNIVVWPY-TTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSL 236 (446)
T ss_pred cceeeeeccCC-CCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 99999999997 47899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-C-------CCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcc---cCCCcccc--------
Q 013439 242 F-P-------GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMW---DSKNMMCA-------- 302 (443)
Q Consensus 242 ~-~-------~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~---~~~~~~~~-------- 302 (443)
+ + |..+.++.+++++|||||++||++++++|+.+.....++..+|.+|+++++ .+.+++..
T Consensus 237 ~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~ 316 (446)
T cd02189 237 DSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRP 316 (446)
T ss_pred ccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccccc
Confidence 7 5 335899999999999999999999999999887666788899999999966 56666654
Q ss_pred -----------cCCCCCcceeeecccccCCChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCC--CCCcceeecc
Q 013439 303 -----------ADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPT--GLSMSSTFMG 369 (443)
Q Consensus 303 -----------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--~~~~s~~~l~ 369 (443)
+++..++||++++++||+....++...+ ++.+.|++|+|+++++++|..++. ..++++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~ 391 (446)
T cd02189 317 EGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVS 391 (446)
T ss_pred ccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEe
Confidence 3456789999999999998777766432 466889999999999999988774 4689999999
Q ss_pred CChhhHHHHHHHHHHHHhhcccccccccccCCCCChhhHHHHHHHHHHHHHHHH
Q 013439 370 NSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423 (443)
Q Consensus 370 Nst~i~~~l~~l~~~~~~m~~krAflh~Y~~~G~ee~eF~ea~~~l~~l~~~Y~ 423 (443)
|+|+|..+|+++++||++||+||||||||+++||||+||.||+++|++++++|+
T Consensus 392 Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 392 NSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999996
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=5.6e-90 Score=701.01 Aligned_cols=381 Identities=52% Similarity=0.950 Sum_probs=362.8
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccCCC
Q 013439 3 EILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYG 82 (443)
Q Consensus 3 EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~~ 82 (443)
|||+||+||||||||.+||+++ |+||+||++|+.++.++.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~---------------------------------------i~iD~e~~~i~~i~~~~~~ 41 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL---------------------------------------ILVDLDPRVINEILQGQLS 41 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH---------------------------------------HcccCCcchhhhhhccccc
Confidence 8999999999999999999966 9999999999999988878
Q ss_pred cccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCc
Q 013439 83 QIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDR 162 (443)
Q Consensus 83 ~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~ 162 (443)
.+|++++++.+++|+||||++||+..|+++.|+++|+||+++|+||.+|||+++||++||||||+|+.++|.|+|+||++
T Consensus 42 ~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~ 121 (382)
T cd06059 42 KLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKI 121 (382)
T ss_pred ccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccccC
Q 013439 163 MMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRF 242 (443)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (443)
.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+.+..++|.++|++||++|+++|.++|+
T Consensus 122 ~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~ 201 (382)
T cd06059 122 LINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRF 201 (382)
T ss_pred ceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccccc
Confidence 99999999986555589999999999999999999999999999999999888888999999999999999999999999
Q ss_pred CCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccccCCC
Q 013439 243 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMS 322 (443)
Q Consensus 243 ~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (443)
||..|.|+++++++|+|||++||++++++|+.......+...++.+++++++++++++..+++..++||++++++||+..
T Consensus 202 ~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~ 281 (382)
T cd06059 202 PGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVF 281 (382)
T ss_pred CCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCC
Confidence 99999999999999999999999999999998766556778899999999999999999899999999999999999999
Q ss_pred hHHHHHHHHHhhccCCcceecccCCCcceeeccCCCC-CCCcceeeccCChhhHHHHHHHHHHHHhhcccccccccccCC
Q 013439 323 TKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPT-GLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGE 401 (443)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflh~Y~~~ 401 (443)
+.++.+.+.+++.+.... +|+|+++++++|+++|. ..++++++++|+|+|.++|+++.++|++||+||||||||+++
T Consensus 282 ~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~ 359 (382)
T cd06059 282 QSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGE 359 (382)
T ss_pred HHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCc
Confidence 999998888877665443 89999999999999997 888999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH
Q 013439 402 GMDEMEFTEAESNMNDLVSEYQQ 424 (443)
Q Consensus 402 G~ee~eF~ea~~~l~~l~~~Y~~ 424 (443)
||||+||.||+++|++++++|++
T Consensus 360 G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 360 GMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred CCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999974
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=8.3e-88 Score=643.41 Aligned_cols=404 Identities=41% Similarity=0.822 Sum_probs=380.5
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCccc--ccccccccccCCCCCCCCcceeecCCCCCccccccc
Q 013439 1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQV--QLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRT 78 (443)
Q Consensus 1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~ 78 (443)
|||||+|++||.|.|||+..|+++|.||++.++|....+.+. ..+.+++||.++..++++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 999999999999999999999999999999999987765442 34577899999999999999999999999 999999
Q ss_pred cCCCcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhh
Q 013439 79 GPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREE 158 (443)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~ 158 (443)
++|+.+|+|++++.|+++++||+|+|+|+.|+|+.|..+++||+.++.|..||||.++|++|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcc
Q 013439 159 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTC 238 (443)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (443)
|+||..+.+++||.+..+..+++|||++|+.+...+++|+.+++||++++.+|++.+.+.+|+|.++|++|+++++++|.
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccc
Q 013439 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFR 318 (443)
Q Consensus 239 ~~r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (443)
++||.|.+|.||.+|.+||+||| + ++|+.+.......+.++.+++...|.+.++|++|+|.+|+|+++|+++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8888877777778899999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCCCCCcceeeccCChhhHHHHHHHHHHHHhhcccccccccc
Q 013439 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWY 398 (443)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflh~Y 398 (443)
|++.|+++..++..+|.+++++|++-.-.+ -......+++|+|+|+|+|++.+.++..+|+.||.||||||||
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd~~v~g-------g~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhwy 385 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVDTVVPG-------GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 385 (407)
T ss_pred CCcCcccchHHHHhhhhccccccceeeccC-------cchhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeeec
Confidence 999999999999999999999998722111 0112356889999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHH
Q 013439 399 TGEGMDEMEFTEAESNMNDLV 419 (443)
Q Consensus 399 ~~~G~ee~eF~ea~~~l~~l~ 419 (443)
+++||||+||.||+|+|..+.
T Consensus 386 vgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 386 VGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred cCCCccccchhhhhhhHHhhc
Confidence 999999999999999998874
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=5.9e-68 Score=509.56 Aligned_cols=350 Identities=84% Similarity=1.347 Sum_probs=331.2
Q ss_pred cccccccccccCCCCCCCCcceeecCCCCCccccccccCCCcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHH
Q 013439 42 VQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVR 121 (443)
Q Consensus 42 ~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir 121 (443)
.+..+++++|.+...++|+||+|+|||+|++++.++.++++.+|+|++ +++| .|+|..|.++.|.
T Consensus 6 ~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds------ 70 (369)
T KOG1375|consen 6 LQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS------ 70 (369)
T ss_pred ceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc------
Confidence 456788999999999999999999999999999999999999999998 4444 8999999888877
Q ss_pred HHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEE
Q 013439 122 KEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV 201 (443)
Q Consensus 122 ~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~ 201 (443)
.||.||||+++||++||||||.|++++..++++||.+.+.+++|+|++. ++++++|||+.|++..|.+++|.+++
T Consensus 71 ----~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~c 145 (369)
T KOG1375|consen 71 ----SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFC 145 (369)
T ss_pred ----ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccc
Confidence 8999999999999999999999999999999999999999999999955 99999999999999999999999999
Q ss_pred ecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccccCCCCCcccHHhhhhcccccCCccccccccccccccccccc
Q 013439 202 LDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQY 281 (443)
Q Consensus 202 ~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~ 281 (443)
+||++|+++|.+.+++..++ ++|..+||||..|.|+.++..|++|+|++||+.+.++|+......++
T Consensus 146 idNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~ 212 (369)
T KOG1375|consen 146 IDNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQY 212 (369)
T ss_pred cccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhcccccccccccccccc
Confidence 99999999999999988886 88999999999999999999999999999999999999999988899
Q ss_pred ccCCHHHHHhhcccCCCcccccCCCCCcceeeecccccCCChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCCCC
Q 013439 282 RALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGL 361 (443)
Q Consensus 282 ~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~ 361 (443)
+.++++++++++|+.+|++..++ ||+++.++|| ..+++.+....++.|.+..|++|+|+++|+.+|..||...
T Consensus 213 ~a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~gl 285 (369)
T KOG1375|consen 213 RALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGL 285 (369)
T ss_pred ccccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCccc
Confidence 99999999999999999998887 9999999999 6788888888899999999999999999999999999999
Q ss_pred CcceeeccCChhhHHHHHHHHHHHHhhcccccccccccCCCCChhhHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 013439 362 SMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ-EAAAE 431 (443)
Q Consensus 362 ~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflh~Y~~~G~ee~eF~ea~~~l~~l~~~Y~~~~-~~~~~ 431 (443)
+.+.+.++|+|+|.+.|+++.++|..||+||||||||.++||+|+||+||..++++++.+|++|. +...+
T Consensus 286 kms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~~~~~ 356 (369)
T KOG1375|consen 286 KMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQDATAE 356 (369)
T ss_pred cccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999994 44433
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=2.7e-64 Score=503.69 Aligned_cols=327 Identities=48% Similarity=0.875 Sum_probs=303.1
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccCCC
Q 013439 3 EILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYG 82 (443)
Q Consensus 3 EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~~ 82 (443)
|||+||+||||||||++||++. |+||+|+++++.++..+..
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~---------------------------------------v~idtd~~~l~~~~~~~~~ 41 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL---------------------------------------VLVDTEPGVIDETLSGPYR 41 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh---------------------------------------heecCCHHHHHHHhCcccc
Confidence 8999999999999999999853 9999999999999887777
Q ss_pred cccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCc
Q 013439 83 QIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDR 162 (443)
Q Consensus 83 ~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~ 162 (443)
.+|++.+.+.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||++||||||+|+.++|.|+|+||++
T Consensus 42 ~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 42 LLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred cccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccccC
Q 013439 163 MMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRF 242 (443)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (443)
++++++|+|+... ++++++||++|++++|.+++|+++++||++|.++|.+.+.+..+.|.++|++||++|+++|.++|+
T Consensus 122 ~~~~~~v~P~~~~-~~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 200 (328)
T cd00286 122 LKITFSILPGPDE-GVIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRF 200 (328)
T ss_pred ceeEEEecCCCCC-cchhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccccc
Confidence 9999999998433 369999999999999999999999999999999998888888899999999999999999999999
Q ss_pred CCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccccCCC
Q 013439 243 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMS 322 (443)
Q Consensus 243 ~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (443)
||..|.|++++.++|+|+|++||++++++|+.......+...++.+++++++++.++++.+++..++++++.+++||+..
T Consensus 201 ~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~ 280 (328)
T cd00286 201 DGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVS 280 (328)
T ss_pred CccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCC
Confidence 99999999999999999999999999999998755555667889999999999999998888888999999999999998
Q ss_pred hHHHHHHHHHhhccCCcceecccCCCcceeeccCCCC-CCCcceeeccCC
Q 013439 323 TKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPT-GLSMSSTFMGNS 371 (443)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~Ns 371 (443)
..++.+.+..++.+..+. +|+|++++++.|..++. ..+.++++++|+
T Consensus 281 ~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~l~Ns 328 (328)
T cd00286 281 PSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPASEHKVSALLLSNS 328 (328)
T ss_pred hHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCCCcCeEEEEeccC
Confidence 889988888877665544 89999999999998886 678889999986
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=1.8e-52 Score=431.46 Aligned_cols=408 Identities=20% Similarity=0.233 Sum_probs=294.6
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCC----CCCCCcceeecCCCCCcccccc
Q 013439 2 REILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEAS----GGRHVPRAVLMDLEPGTMDSLR 77 (443)
Q Consensus 2 ~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~l~vD~e~~~i~~~~ 77 (443)
|||||||+||++|+||+||||.|...+... ++.+....+++++||++. ..+|+||+|++|+++++..--+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~------~~~~~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYD------PDSPASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCC------CCCccccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 799999999999999999999995544333 233334568899999975 5699999999999997643221
Q ss_pred ccC----------------CCcccCCCccccc-----cCCCCCCCcccccc---cchhhHHHHHHHHHHHHhhcCCCCCc
Q 013439 78 TGP----------------YGQIFRPDNFVFG-----QNGAGNNWAKGHYT---EGAELIDSVLDVVRKEAENCDCLQGF 133 (443)
Q Consensus 78 ~~~----------------~~~~~~~~~~~~~-----~~~~gnnwa~G~~~---~g~~~~~~~~d~ir~~~E~cd~lqgf 133 (443)
.+. .+-.|||+++..- ..+.+++|+.|+-. .+.+..|+++|+||+++|+||.||||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 111 1235899887553 34566777766532 34567799999999999999999999
Q ss_pred eeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCC----CcccchhhHHHHHHHHHhhcCCeeEEecCc-chh
Q 013439 134 QICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV----SDTVVEPYNATLSVHQLVENADECMVLDNE-ALY 208 (443)
Q Consensus 134 ~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~-~l~ 208 (443)
++++|++||| ||+|+.++|.|+|||||+.+++++++|.... .+.++++||++|++.+|.+++|+++|+.-. .++
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w 233 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLW 233 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Confidence 9999999999 8999999999999999999999999996422 257899999999999999999999999743 322
Q ss_pred hhh-----hcccCCCCCCcccccHHHHHhhccCcccccCCCCCcccHHhhhhcccccCCccccccccccccccccccccc
Q 013439 209 DIC-----FRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRA 283 (443)
Q Consensus 209 ~~~-----~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~ 283 (443)
... ...+.++..+..+..+++|.+|+++|.|+|+.+.. .+|.+|+..|.+..|.........|++.. ..
T Consensus 234 ~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gRki~~~~~a~P~p~~-----~~ 307 (493)
T cd06060 234 RKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGRKVVAAGLALPFPMV-----GG 307 (493)
T ss_pred cCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccchhhhhccCCCCCCC-----CC
Confidence 211 11223334456677899999999999999998766 57999999999877755555556788752 23
Q ss_pred CCHHHHHhhcc--cCCCcccccCCCCCcceeeecccccCCCh----------------------HHHHHHHHHhhccCCc
Q 013439 284 LTIPELTQQMW--DSKNMMCAADPRHGRYLTASAMFRGKMST----------------------KEVDEQMINVQNKNSS 339 (443)
Q Consensus 284 ~t~~~l~~~~~--~~~~~~~~~~~~~~~~ls~~~~~RG~~~~----------------------~~~~~~~~~~~~~~~~ 339 (443)
.++.+++..+- .+..++.+..+...++++++++.||.... .++.+.+.+...+.+.
T Consensus 308 ~~l~d~L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s~ 387 (493)
T cd06060 308 QDLIDFLDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGSM 387 (493)
T ss_pred CcHHHHHHhcCCCCCccccCCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCcc
Confidence 45666666542 12233422223456899999999996411 1232222222222111
Q ss_pred ceecccCCCccee----------eccCC------C---C--CCC--cceeeccCChhhHHHHHHHHHHHHhhcccccccc
Q 013439 340 YFVEWIPHNVKSS----------VCDIP------P---T--GLS--MSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLH 396 (443)
Q Consensus 340 ~f~~w~p~~~~~~----------~~~~~------~---~--~~~--~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflh 396 (443)
....-.|.|+++. +.... . . .++ ..++.|+|++++.+.|+.++.++.|+--+| +|
T Consensus 388 ~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~~ 465 (493)
T cd06060 388 SALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--KA 465 (493)
T ss_pred hhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--hh
Confidence 1111111111111 11000 0 0 011 345779999999999999999999999999 99
Q ss_pred cccCCCCChhhHHHHHHHHHHHHHHHHH
Q 013439 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 (443)
Q Consensus 397 ~Y~~~G~ee~eF~ea~~~l~~l~~~Y~~ 424 (443)
.|...|+|+|||+|+++.|.+++++|++
T Consensus 466 ~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 466 SFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred cccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999973
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=9.4e-51 Score=382.63 Aligned_cols=215 Identities=50% Similarity=0.967 Sum_probs=200.5
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccCCC
Q 013439 3 EILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYG 82 (443)
Q Consensus 3 EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~~ 82 (443)
|||+||+||||||||.+||+++++||+++++ ........+.++||++...++|+||+|+||+|++++++++.++.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~----~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPD----SKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTT----SSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccc----cccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999876 222234567789999999999999999999999999999888777
Q ss_pred cccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCc
Q 013439 83 QIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDR 162 (443)
Q Consensus 83 ~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~ 162 (443)
.+|++++++.+++|+|+||++||+..|+++.++++|+||+.+|+||.+|+|+++||+|||||||+++.|++.|+++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcc
Q 013439 163 MMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFG 223 (443)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~ 223 (443)
++++++|+|+ .. +.++++||++++|++|.+++|+++++||++|.++|.+.+++..|+|+
T Consensus 157 ~~~~~~ilP~-~~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 157 PIISFSILPF-SS-EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEEEEEE-C-GG-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ceeecccccc-cc-ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 9999999998 44 89999999999999999999999999999999999999998878765
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=1.6e-36 Score=280.70 Aligned_cols=185 Identities=39% Similarity=0.680 Sum_probs=171.1
Q ss_pred ccccCCCCCCCCcceeecCCCCCccccccccCCCcccCCCccccccCCCCCCCcccccc-----cchhhHHHHHHHHHHH
Q 013439 49 VYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYT-----EGAELIDSVLDVVRKE 123 (443)
Q Consensus 49 ~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~gnnwa~G~~~-----~g~~~~~~~~d~ir~~ 123 (443)
.+|.++ ++.||+|++|+++++++.+..++.+..|++.+.+.++.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 355543 78999999999999999888777778899988889999999999999998 8999999999999999
Q ss_pred HhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEec
Q 013439 124 AENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203 (443)
Q Consensus 124 ~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~d 203 (443)
+|.| ++|+++||++||||||+++.+++.++ +||+.. ++++++|. ..|.++++||++++|++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999994 57889999999999999999999999999
Q ss_pred CcchhhhhhcccCCCCCCcccccHHHHHhhccCcccccCCC
Q 013439 204 NEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPG 244 (443)
Q Consensus 204 N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 244 (443)
|++|.+.+.+.+.+ .+.|.++|++||++|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999877765 77999999999999999999999986
No 21
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=100.00 E-value=6.1e-34 Score=279.70 Aligned_cols=256 Identities=21% Similarity=0.325 Sum_probs=175.4
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccc-cccccCCCC----CCCCcceeecCCCCCcccc
Q 013439 1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERV-NVYFNEASG----GRHVPRAVLMDLEPGTMDS 75 (443)
Q Consensus 1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~F~e~~~----~~~~pR~l~vD~e~~~i~~ 75 (443)
||||+|||+|+.+|++|+||||+|..-.++.++.... + ....+ +|+++.+++ -+|+||+|++|+++.+...
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~---~-~~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~ 76 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEP---P-GELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTL 76 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCC---h-hhcCcchhhhhccccccCceeeccceeEEecCcccccc
Confidence 9999999999999999999999995555555433211 1 11222 899998754 4899999999999865321
Q ss_pred ccccC-C-----------------------------CcccCCCccc-------------cccCCCCCCCc----------
Q 013439 76 LRTGP-Y-----------------------------GQIFRPDNFV-------------FGQNGAGNNWA---------- 102 (443)
Q Consensus 76 ~~~~~-~-----------------------------~~~~~~~~~~-------------~~~~~~gnnwa---------- 102 (443)
...+. + ..++..+..+ +...-+++.|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~ 156 (483)
T KOG2530|consen 77 KYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPR 156 (483)
T ss_pred ccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCcc
Confidence 10000 0 0000000000 00012222232
Q ss_pred --------------ccccccchhh------HHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCc
Q 013439 103 --------------KGHYTEGAEL------IDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDR 162 (443)
Q Consensus 103 --------------~G~~~~g~~~------~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~ 162 (443)
.+.|..|.+. .+++.|+||.++|+||.||||+++.++.+||| |+++.++|.|+|||+++
T Consensus 157 tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~ 235 (483)
T KOG2530|consen 157 TLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKK 235 (483)
T ss_pred ccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCC
Confidence 2334555544 47889999999999999999999999999996 99999999999999999
Q ss_pred eeeEEEEecCCC-CCcc---cch---hhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhcc
Q 013439 163 MMMTFSVFPSPK-VSDT---VVE---PYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSG 235 (443)
Q Consensus 163 ~i~~~~v~P~~~-~~~~---~~~---~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 235 (443)
.+++++..|.+. .++. +-. ..|.++++.+|.+.|++++|+.--.. ++ ...+..+++|.+|++
T Consensus 236 ~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~-------~~----~~~~tsA~~a~~~ds 304 (483)
T KOG2530|consen 236 AVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASG-------LG----DLWETSAKLARAFDS 304 (483)
T ss_pred ceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccc-------cc----cHHHHHHHHHhhccc
Confidence 999999998532 2222 222 56899999999999999999942111 11 235678999999999
Q ss_pred CcccccCCCCCcccHHhhhhcccccCCccccccccccccc
Q 013439 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTA 275 (443)
Q Consensus 236 ~t~~~r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~ 275 (443)
+|.|+|.-++.|.-+ +..+++..+.........|+..
T Consensus 305 ~tlptr~~ssS~~~~---~d~ls~l~~~~~~~g~alpf~~ 341 (483)
T KOG2530|consen 305 ITLPTRLISSSNLRQ---RDTLSYLGSKVITLGYALPFPL 341 (483)
T ss_pred ccccceecchhHHHH---HHHHHHHHHHHHHhhhccCCCc
Confidence 999999988755444 4444454444444444555543
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.97 E-value=2.9e-31 Score=265.88 Aligned_cols=214 Identities=24% Similarity=0.320 Sum_probs=185.0
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccC
Q 013439 1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGP 80 (443)
Q Consensus 1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~ 80 (443)
|| |..|.+|+||+.|-+++++.- .. .+.+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~~-----~~-----------------------~~~~~~~~~iavntD~~~L~~l~~-- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRHD-----KR-----------------------SGFGYCVGALAINTAKNDLKGLKH-- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHhC-----CC-----------------------cCCccceeEEEEECCHHHHHhhhc--
Confidence 55 788999999999999987521 00 123689999999999998887654
Q ss_pred CCcccCCCccccccC-----CCCCCCcccccccchhhHHHHHHHHHHHHhhcCC--CCCceeeecCCCCccccchHHHHH
Q 013439 81 YGQIFRPDNFVFGQN-----GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDC--LQGFQICHSLGGGTGSGMGTLLIS 153 (443)
Q Consensus 81 ~~~~~~~~~~~~~~~-----~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~--lqgf~i~~s~~GGtGSG~~s~lle 153 (443)
.+.++.++.+++ |+|++|. .|+++.++..|.||+.+|.||. +|+|++++|++||||||+++.+++
T Consensus 50 ---~~~~~ki~~g~~~t~G~GaG~~~~-----~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae 121 (349)
T cd02202 50 ---IPAEDRILIGQSEVKGHGVGADRE-----LGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAK 121 (349)
T ss_pred ---CCCCCEEEecCcccCCCCCCCChH-----HHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHH
Confidence 335667777764 5666664 5789999999999999999997 999999999999999999999999
Q ss_pred HHHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhh
Q 013439 154 KIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTM 233 (443)
Q Consensus 154 ~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i 233 (443)
.++++|| +++++++++|+. .+..+++||+++++++|.+++|.++++||++|.+.+.. + .+.|.++|++||+.|
T Consensus 122 ~lke~~~-~~~~~iv~~P~~--~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i 194 (349)
T cd02202 122 ELKERYE-EPVYALGVLPAR--EEGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRI 194 (349)
T ss_pred HHHHhCC-ccEEEEEEecCC--CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHH
Confidence 9999999 889999999983 45689999999999999999999999999999987632 2 378999999999999
Q ss_pred ccCcccccC-----CCCCcccHHhhhhccccc
Q 013439 234 SGVTCCLRF-----PGQLNSDLRKLAVNLIPF 260 (443)
Q Consensus 234 ~~~t~~~r~-----~~~~n~~l~~~~~~L~p~ 260 (443)
..++.+.|+ ||..|.|++++.++|.+.
T Consensus 195 ~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~ 226 (349)
T cd02202 195 GLLLRAGEANAGDSVGESVLDASEVINTLSGG 226 (349)
T ss_pred HHHHHhhhcccCCCCCeEeccHHHHHHHhccC
Confidence 999999999 999999999999999775
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.94 E-value=2.4e-26 Score=226.22 Aligned_cols=205 Identities=23% Similarity=0.314 Sum_probs=168.1
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccCCCc
Q 013439 4 ILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQ 83 (443)
Q Consensus 4 IItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~~~ 83 (443)
|..|.+|+||+.+-+++++. ++ .-.+.++||++...++.+... .+-
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~----------------------------~~~~~iainTd~~~L~~~~a~-~ki 48 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK----------------------------EGRSAVAVNTDAQDLLGLEAE-NRV 48 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC----------------------------CCccEEEEECcHHHHhcCCCC-cEE
Confidence 77899999999999998641 10 013578999998777655421 111
Q ss_pred ccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCce
Q 013439 84 IFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRM 163 (443)
Q Consensus 84 ~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~ 163 (443)
++.++ .+...|+|+||.. |+++.++.+++||+.+|.||. |++++++|||||||+++.+++.+++.|+ .
T Consensus 49 ~iG~~--~t~g~GaG~~~~~-----G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~--~ 116 (303)
T cd02191 49 LIGQA--RTKGLGAGANPEL-----GAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT--L 116 (303)
T ss_pred ecCCc--cccCCCCCCCHHH-----HHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC--C
Confidence 22221 2344689999975 568999999999999999984 8999999999999999999999999986 3
Q ss_pred eeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccccCC
Q 013439 164 MMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFP 243 (443)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (443)
+++|+|.+...|..+++||+.+++++|.+++|.++++||++|.+++.+ +.+. ..|+.+|++|++.+.++|...|+|
T Consensus 117 --~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~~~ 192 (303)
T cd02191 117 --TVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIEIE 192 (303)
T ss_pred --EEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhccC
Confidence 444555444678899999999999999999999999999999999876 6664 589999999999999999999999
Q ss_pred CCCcccHHhhhhccc
Q 013439 244 GQLNSDLRKLAVNLI 258 (443)
Q Consensus 244 ~~~n~~l~~~~~~L~ 258 (443)
|..|.|++++.+.|.
T Consensus 193 g~invD~~dv~~~l~ 207 (303)
T cd02191 193 GEINVDFADVKNVMD 207 (303)
T ss_pred CcccCCHHHHHHHhc
Confidence 999999999988774
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.92 E-value=4.2e-25 Score=220.75 Aligned_cols=206 Identities=19% Similarity=0.296 Sum_probs=163.9
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccCCCc
Q 013439 4 ILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQ 83 (443)
Q Consensus 4 IItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~~~ 83 (443)
|..|.+|+||+.+-+++++.- + .-...+.+|++...++.+... .+-
T Consensus 20 i~viGvGg~G~n~v~~l~~~~-----~----------------------------~~~~~iainTD~~~L~~~~a~-~ki 65 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEEG-----V----------------------------EGVEFIAINTDAQHLKTTKAD-KKI 65 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHcC-----C----------------------------CceEEEEEECCHHHHhcCCCC-eEE
Confidence 778999999999999886531 0 014468888887665544321 111
Q ss_pred ccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCce
Q 013439 84 IFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRM 163 (443)
Q Consensus 84 ~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~ 163 (443)
++.++ .++..|+|++|+. |+++.++.+|.||+.+|.||.+ ++++|+|||||||+++.+++.+++ ++ +.
T Consensus 66 ~iG~~--~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake-~~-~l 133 (349)
T TIGR00065 66 LIGKK--LTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKE-LG-AL 133 (349)
T ss_pred EcCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHH-cC-CC
Confidence 22221 1233588999874 6899999999999999999985 999999999999999966666554 54 44
Q ss_pred eeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccccCC
Q 013439 164 MMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFP 243 (443)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (443)
++++.++|+ ..|..+++||+.+++.+|.+++|+++++||++|.++|.+ +.+.. .|+.+|.+|++.+.++|.++|+|
T Consensus 134 ~vaivt~Pf--~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~-af~~~N~iia~~i~~it~~ir~~ 209 (349)
T TIGR00065 134 TVAVVTKPF--KFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLND-AFKVADDVLVRAVKGISELITKP 209 (349)
T ss_pred EEEEEeCCc--cccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHhHHHhhccC
Confidence 555555565 578899999999999999999999999999999999977 77644 89999999999999999999999
Q ss_pred CCCcccHHhhhhcccc
Q 013439 244 GQLNSDLRKLAVNLIP 259 (443)
Q Consensus 244 ~~~n~~l~~~~~~L~p 259 (443)
|.+|.|+.++.+-|--
T Consensus 210 g~iNvDf~dv~~vl~~ 225 (349)
T TIGR00065 210 GLINIDFADVRAVMSG 225 (349)
T ss_pred CcCcCCHHHHHHHHhc
Confidence 9999999999987754
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.91 E-value=1.7e-24 Score=214.01 Aligned_cols=208 Identities=17% Similarity=0.272 Sum_probs=167.0
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccCCCc
Q 013439 4 ILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQ 83 (443)
Q Consensus 4 IItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~~~ 83 (443)
|..|.+|+||+.+-+++++. ++ . -...+.+|++...++.+... .+-
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~-------------------------~---~~~~~a~ntD~~~L~~~~~~-~k~ 48 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL-------------------------E---GVEFIAANTDAQALAKSKAP-NKI 48 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------C---CceEEEEECCHHHHhcCCCC-cEE
Confidence 67799999999999988651 10 0 13468899888776655422 122
Q ss_pred ccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCce
Q 013439 84 IFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRM 163 (443)
Q Consensus 84 ~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~ 163 (443)
++.++ .++..|+|++|+.| ++..++..|+||+.+|.||.+ +|++++|||||||+++.+++..+ +|+ +.
T Consensus 49 ~ig~~--~t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g-~~ 116 (304)
T cd02201 49 QLGKE--LTRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMG-AL 116 (304)
T ss_pred EcCCC--CCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcC-CC
Confidence 22222 23446899998855 678899999999999999875 99999999999999998776665 465 35
Q ss_pred eeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccccCC
Q 013439 164 MMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFP 243 (443)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (443)
++++.++|+ ..|..+++||+.+++++|.+++|.++++||++|.++|.+.+.+.. .|+.+|.+|++.+.++|.++|+|
T Consensus 117 ~~~vvt~Pf--~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~ 193 (304)
T cd02201 117 TVAVVTKPF--SFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKP 193 (304)
T ss_pred EEEEEeCCc--cccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccC
Confidence 556666665 567789999999999999999999999999999999977777655 69999999999999999999999
Q ss_pred CCCcccHHhhhhccccc
Q 013439 244 GQLNSDLRKLAVNLIPF 260 (443)
Q Consensus 244 ~~~n~~l~~~~~~L~p~ 260 (443)
|..|.|+.++.+.|..-
T Consensus 194 g~invD~~dv~~vl~~~ 210 (304)
T cd02201 194 GLINLDFADVKTVMKNK 210 (304)
T ss_pred ccccCCHHHHHHHhccC
Confidence 99999999999988653
No 26
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.90 E-value=5.4e-24 Score=183.65 Aligned_cols=123 Identities=41% Similarity=0.865 Sum_probs=112.3
Q ss_pred CCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccccCCChHHHHHHHHHhhccCCcc
Q 013439 261 PRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY 340 (443)
Q Consensus 261 p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 340 (443)
|++||++++++|+........++.++.||++++|+++++|+++++.+|+|||+++++||++.++++.+.+.+++.+..+.
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999887778889999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCcceeeccCCCCCCCcc---eeeccCChhhHHHHHHHHH
Q 013439 341 FVEWIPHNVKSSVCDIPPTGLSMS---STFMGNSTSIQEMFRRVSE 383 (443)
Q Consensus 341 f~~w~p~~~~~~~~~~~~~~~~~s---~~~l~Nst~i~~~l~~l~~ 383 (443)
|++|+|+++|+++|+++|.+...+ +++|+|+|+|.++|+++.+
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTSSEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCCcceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999999888777 9999999999999999864
No 27
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.89 E-value=5.5e-23 Score=206.29 Aligned_cols=205 Identities=20% Similarity=0.352 Sum_probs=165.5
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccCCCc
Q 013439 4 ILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQ 83 (443)
Q Consensus 4 IItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~~~ 83 (443)
|..|.+|+||+.+-+++++. ++. -...+.|+++...+..+... .+-
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~~----------------------------~v~~iaiNTD~q~L~~~~a~-~ki 76 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GIE----------------------------GAETIAINTDAQHLAMIKAD-KKI 76 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CCC----------------------------CceEEEEECCHHHHhcCCCC-cEE
Confidence 67899999999999998741 110 02458889888766554332 111
Q ss_pred ccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCce
Q 013439 84 IFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRM 163 (443)
Q Consensus 84 ~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~ 163 (443)
++.++ .+...|+|++|..| ++..++..|.||+.+|.||. |+|++++|||||||+++.+++.+++ ++ ..
T Consensus 77 ~iG~~--~t~G~GaG~dp~~G-----~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~l 144 (378)
T PRK13018 77 LIGKS--LTRGLGAGGDPEVG-----RKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-AL 144 (378)
T ss_pred ecCCc--cCCCCCCCCChHHH-----HHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CC
Confidence 22111 23345788887754 67788889999999999987 8999999999999999999999987 44 55
Q ss_pred eeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccccCC
Q 013439 164 MMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFP 243 (443)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (443)
.+++++.|+ ..|...+..|+.+++.+|.+++|.++++||++|.++| +.+.+. ..|+.+|.+|++.+.++|.++|+|
T Consensus 145 tv~vVt~Pf--~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~~~ 220 (378)
T PRK13018 145 VVGVVTKPF--KFEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITETITKP 220 (378)
T ss_pred eEEEEEcCc--ccccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcccC
Confidence 677888997 4577889999999999999999999999999999998 666665 379999999999999999999999
Q ss_pred CCCcccHHhhhhccc
Q 013439 244 GQLNSDLRKLAVNLI 258 (443)
Q Consensus 244 ~~~n~~l~~~~~~L~ 258 (443)
|..|.|++++.+-|-
T Consensus 221 G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 221 SLINLDFADVKSVMK 235 (378)
T ss_pred CceecCHHHHHHHhc
Confidence 999999999998775
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.87 E-value=5.7e-22 Score=180.38 Aligned_cols=117 Identities=24% Similarity=0.416 Sum_probs=95.7
Q ss_pred HHHHHH-HHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCcee-eEEEEecCCCCCc-----ccchhhHHH
Q 013439 114 DSVLDV-VRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMM-MTFSVFPSPKVSD-----TVVEPYNAT 186 (443)
Q Consensus 114 ~~~~d~-ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i-~~~~v~P~~~~~~-----~~~~~yN~~ 186 (443)
+++.|+ ||.++|+||.|||||++.++.+||| |+++.++|+|+|||||+++ +.+++.+...... ...+.+|.+
T Consensus 57 ~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a 135 (180)
T PF14881_consen 57 EDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLLEHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKA 135 (180)
T ss_pred hHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHHHHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHH
Confidence 455554 9999999999999999999999997 9999999999999999996 6666654322111 124568999
Q ss_pred HHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccccC
Q 013439 187 LSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRF 242 (443)
Q Consensus 187 lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (443)
+++.+|.++|++++|+.... +..+..+..+++|.+|+++|.|+|+
T Consensus 136 ~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htSai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 136 LSLSELSEQSSLFVPLSTLS-----------DASSNWHTSAILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHhhCCEEEecCCCC-----------cCCCcHHHHHHHHHHHHhccccCCC
Confidence 99999999999999996210 2345569999999999999999995
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=99.84 E-value=4.7e-21 Score=192.52 Aligned_cols=208 Identities=19% Similarity=0.298 Sum_probs=163.8
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccCCC
Q 013439 3 EILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYG 82 (443)
Q Consensus 3 EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~~~ 82 (443)
.|..|.+|.||+.+-+++++.- +. . ...+.++++...+..+... .+
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~~-----~~----------------~------------v~fia~NTD~q~L~~~~a~-~k 60 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEEG-----IQ----------------G------------VEFIAANTDAQALLKSKAP-VK 60 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHcC-----CC----------------C------------ceEEEEeCcHHHHhcCCCC-eE
Confidence 3778999999999999986521 10 0 1348888887665544322 11
Q ss_pred cccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCc
Q 013439 83 QIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDR 162 (443)
Q Consensus 83 ~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~ 162 (443)
-++.++ .+...|+|++|. .|++..++..+.||+.+|.||.+ +|++++|||||||.++. +..+..+|+
T Consensus 61 i~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapv-IA~iake~g-- 127 (384)
T PRK09330 61 IQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAPV-VAEIAKELG-- 127 (384)
T ss_pred EEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHH-HHHHHHHcC--
Confidence 122211 223358888887 56899999999999999999887 99999999999999995 555556665
Q ss_pred eeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccccC
Q 013439 163 MMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRF 242 (443)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (443)
+++++|+|.+...|..+++||+.++|.+|.+++|.+|+++|++|.+++.+.+.+.. .|+.+|.+|++.+.+++..+++
T Consensus 128 -~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i~~ 205 (384)
T PRK09330 128 -ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLITK 205 (384)
T ss_pred -CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 55566655555788999999999999999999999999999999998877666644 7999999999999999999999
Q ss_pred CCCCcccHHhhhhcccc
Q 013439 243 PGQLNSDLRKLAVNLIP 259 (443)
Q Consensus 243 ~~~~n~~l~~~~~~L~p 259 (443)
||..|.|+.++.+-|.-
T Consensus 206 pG~iNvDfaDvk~vm~~ 222 (384)
T PRK09330 206 PGLINLDFADVKTVMSE 222 (384)
T ss_pred CCcccCCHHHHHHHHhc
Confidence 99999999999887753
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.58 E-value=1.1e-15 Score=129.42 Aligned_cols=66 Identities=30% Similarity=0.492 Sum_probs=52.6
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCC----CCCCCcceeecCCCCCcc
Q 013439 2 REILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEAS----GGRHVPRAVLMDLEPGTM 73 (443)
Q Consensus 2 ~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~l~vD~e~~~i 73 (443)
|||||||+|+.+|+||+||||+| |..+. +.++.+....+++++||++. ..+|+||+|++|++++..
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Q--e~~~~----y~~~~~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lG 70 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQ--ESYLP----YDPDEKPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLG 70 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhh--hcccc----cCccccCcccCCceEEecccCcCCCeeECCcEEEEecCCCcC
Confidence 79999999999999999999998 65542 22222223468899999974 368999999999999863
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.32 E-value=5.9e-12 Score=124.41 Aligned_cols=147 Identities=17% Similarity=0.273 Sum_probs=125.4
Q ss_pred cccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHH
Q 013439 106 YTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNA 185 (443)
Q Consensus 106 ~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~ 185 (443)
...|++..++..+.|+..++..| -++++.++|||||+|.++.+++.+++ .....++++++|+ ..|.....-|+
T Consensus 75 P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf--~~EG~~r~~~A 147 (338)
T COG0206 75 PEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPF--SFEGSPRMENA 147 (338)
T ss_pred cHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecc--hhcCchHHHHH
Confidence 66789999999999988888766 56899999999999999999999998 4788889999998 45666788899
Q ss_pred HHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccccCCCCCcccHHhhhhcccccC
Q 013439 186 TLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFP 261 (443)
Q Consensus 186 ~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p~p 261 (443)
..++..|.+++|.+|+++|+.|.+... ...+ ...|...|.++++.+..++..+--||..|.|+.++.+-+....
T Consensus 148 ~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~~G 221 (338)
T COG0206 148 EEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGGG 221 (338)
T ss_pred HHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhcCC
Confidence 999999999999999999999977653 2221 2357778999999999999988899999999999998887643
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.42 E-value=1.3e-07 Score=79.95 Aligned_cols=114 Identities=26% Similarity=0.440 Sum_probs=85.3
Q ss_pred CcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHh--hcccCCCcccccCCCCCcceeeecccccCCCh
Q 013439 246 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQ--QMWDSKNMMCAADPRHGRYLTASAMFRGKMST 323 (443)
Q Consensus 246 ~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 323 (443)
.|.|++++.++|+|+| |+.++++|.... .+..+..+++. .++++++++..+++.. |+++.. ++..
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 3689999999999999 888999998752 34456667766 7888777776655442 676664 6778
Q ss_pred HHHHHHHHHhhccCC-cceecccC-CCcceeeccCCCCCCCcceeeccC-ChhhHHHHHHHH
Q 013439 324 KEVDEQMINVQNKNS-SYFVEWIP-HNVKSSVCDIPPTGLSMSSTFMGN-STSIQEMFRRVS 382 (443)
Q Consensus 324 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~s~~~l~N-st~i~~~l~~l~ 382 (443)
.++.+.+..++.+.. ..|+.|.| ..+++ ..+.+.++| +|+|...|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~----------~~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEEL----------GGDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcC----------CCCcEEEEEEecccCccccccC
Confidence 899888888876655 78999998 44332 145688999 999999987753
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.33 E-value=0.0038 Score=63.11 Aligned_cols=102 Identities=24% Similarity=0.186 Sum_probs=61.1
Q ss_pred ccCCCCCCCccccccc---chhhHHHHHHHHHHHHhh-----c--CCCCCceeeecCCCCccccchHHHHHHHHhhc---
Q 013439 93 GQNGAGNNWAKGHYTE---GAELIDSVLDVVRKEAEN-----C--DCLQGFQICHSLGGGTGSGMGTLLISKIREEY--- 159 (443)
Q Consensus 93 ~~~~~gnnwa~G~~~~---g~~~~~~~~d~ir~~~E~-----c--d~lqgf~i~~s~~GGtGSG~~s~lle~l~d~y--- 159 (443)
...|+|..-+.|.... -.++.+.+.+.++..+++ . ..+ -+.|++|++||||||+---++-.||+.+
T Consensus 101 ~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~ 179 (345)
T PF13809_consen 101 LSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGL-NVFVVGSLAGGTGSGMFLDIAYLLRDILKQP 179 (345)
T ss_pred hhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCc-EEEEEEecCCccchhHHHHHHHHHHHHhhcc
Confidence 3457777766664322 233334444444421111 1 011 2578999999999999999999999976
Q ss_pred --CCceeeEEEEecCCCCCc---ccchhhHHHHHHHHHhhc
Q 013439 160 --PDRMMMTFSVFPSPKVSD---TVVEPYNATLSVHQLVEN 195 (443)
Q Consensus 160 --p~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~e~ 195 (443)
....|..+.++|....+. .....-|+.=+|.+|.-+
T Consensus 180 ~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~ 220 (345)
T PF13809_consen 180 GQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYL 220 (345)
T ss_pred cCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHH
Confidence 455688888999632111 133345777676666543
No 34
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=67.10 E-value=11 Score=32.24 Aligned_cols=43 Identities=28% Similarity=0.576 Sum_probs=31.4
Q ss_pred CCccccchHHHHHHHHhhcCC-ceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCC
Q 013439 141 GGTGSGMGTLLISKIREEYPD-RMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENAD 197 (443)
Q Consensus 141 GGtGSG~~s~lle~l~d~yp~-~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd 197 (443)
+|-|.|+|..+.+.||.++|. ..|++... |++=+-+-|..-+|
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlGT--------------Na~AT~~MlKaGA~ 49 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALGT--------------NAIATSAMLKAGAN 49 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEeh--------------hHHHHHHHHHcCCC
Confidence 456778999999999999998 77777654 55555555555444
No 35
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=66.43 E-value=22 Score=32.36 Aligned_cols=109 Identities=14% Similarity=0.212 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCc-eeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHH
Q 013439 112 LIDSVLDVVRKEAENCDCLQGF-QICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVH 190 (443)
Q Consensus 112 ~~~~~~d~ir~~~E~cd~lqgf-~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~ 190 (443)
+...+.+.|+..+|+ |+ -++.+.+-|+. -.++.++-.|+.+||...+ .+++|+...+..-- -..-.-+.
T Consensus 27 ik~~L~~~i~~lie~-----G~~~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W~--~~~q~~y~ 96 (177)
T PF06908_consen 27 IKKALKKQIIELIEE-----GVRWFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNWN--EANQERYQ 96 (177)
T ss_dssp HHHHHHHHHHHHHTT-----T--EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcCC--HHHHHHHH
Confidence 344555666677764 43 23334444443 3455566678999997655 45789743332211 13334567
Q ss_pred HHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCccc
Q 013439 191 QLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCC 239 (443)
Q Consensus 191 ~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 239 (443)
.|.+.||-++.+..+.... +..|..-|+.+...-+.+.+-
T Consensus 97 ~il~~aD~v~~vs~~~Y~~---------~~~~~~rn~fMvdhsd~~iav 136 (177)
T PF06908_consen 97 SILEQADFVVVVSERPYYS---------PGQLQKRNRFMVDHSDGLIAV 136 (177)
T ss_dssp HHHHH-SEEEESSSSB------------HHHHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEccCCCCCC---------HHHHHHHhHHHHhCCCeEEEE
Confidence 7788899998886543321 112445666666665555543
No 36
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=64.60 E-value=6.4 Score=33.66 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhh
Q 013439 113 IDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREE 158 (443)
Q Consensus 113 ~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~ 158 (443)
.+...++|+..+++++. +|..++.++ |||-. -....+|.+.++
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp~-n~~~a~e~~~~~ 83 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAEM-NAEMAIEMLDGE 83 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChHH-HHHHHHHhcCCC
Confidence 34556888889999999 999999999 77631 123335555434
No 37
>PLN02847 triacylglycerol lipase
Probab=59.44 E-value=9.9 Score=40.97 Aligned_cols=62 Identities=26% Similarity=0.329 Sum_probs=42.1
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHh--hcCCceeeEEE
Q 013439 103 KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIRE--EYPDRMMMTFS 168 (443)
Q Consensus 103 ~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d--~yp~~~i~~~~ 168 (443)
+|++...+.+.+.+...|++.++++...+-+++-||+|||+ ++.+.-.|++ .+++...++|+
T Consensus 224 ~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGV----AALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 224 CGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGT----AALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHH----HHHHHHHHhcCCCCCCceEEEec
Confidence 45554455677777788888899998888888899998776 3444444554 45555555554
No 38
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=59.33 E-value=11 Score=31.35 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcc
Q 013439 111 ELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTG 144 (443)
Q Consensus 111 ~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtG 144 (443)
+-.+++.+++++.+++.+.-+|+.++.++.|||-
T Consensus 38 ~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 38 ESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp SCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 3456777888888888888899999999999874
No 39
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=59.07 E-value=30 Score=29.03 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeecCCCCcc
Q 013439 112 LIDSVLDVVRKEAENCDCLQGFQICHSLGGGTG 144 (443)
Q Consensus 112 ~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtG 144 (443)
-.+++.++++..+++.+.=+|+.|+.++-|||-
T Consensus 40 ~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 40 NAETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 356677888888888777789999999999985
No 40
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=50.44 E-value=34 Score=28.75 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeecCCCCcc
Q 013439 112 LIDSVLDVVRKEAENCDCLQGFQICHSLGGGTG 144 (443)
Q Consensus 112 ~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtG 144 (443)
-.+++.+++++.+++.+.-+|+.++.++-|||-
T Consensus 39 ~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 39 SPDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 345667778888888877789999999998874
No 41
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=50.35 E-value=52 Score=33.14 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=56.2
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHHH
Q 013439 108 EGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 187 (443)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (443)
...+.|.++.+.|+... +..+||.|+|+.+ | --.++.+|+.+-...+|-.+++=+-.|....+..-......++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 45677777888887755 5679999999876 4 3556777776555545656666667886443333333333344
Q ss_pred HHHHHhhcCCeeEEecCcchhh
Q 013439 188 SVHQLVENADECMVLDNEALYD 209 (443)
Q Consensus 188 sl~~l~e~sd~~i~~dN~~l~~ 209 (443)
.++.-.... .|++.=|+.++.
T Consensus 137 ~~A~~~~~~-GV~V~f~~~i~~ 157 (335)
T PRK09461 137 YVAANYPIN-EVTLFFNNKLFR 157 (335)
T ss_pred HHHcCCCCC-eEEEEECCEeec
Confidence 444322233 444444555544
No 42
>PF03283 PAE: Pectinacetylesterase
Probab=41.87 E-value=43 Score=34.08 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=35.4
Q ss_pred ccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCC
Q 013439 105 HYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPD 161 (443)
Q Consensus 105 ~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~ 161 (443)
.|..|..+.+.+++.|... .-+..+-+++..+.+||+|+ -.-++.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~--gl~~a~~vlltG~SAGG~g~---~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSN--GLPNAKQVLLTGCSAGGLGA---ILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHh--cCcccceEEEeccChHHHHH---HHHHHHHHHHhcc
Confidence 4557888888888777655 13334445788888877752 2237889999995
No 43
>PRK13660 hypothetical protein; Provisional
Probab=41.14 E-value=1.6e+02 Score=26.89 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHHH
Q 013439 112 LIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQ 191 (443)
Q Consensus 112 ~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 191 (443)
+...+.+.|+..+|+ .+.= ++.+..=|+- =.++-++-.|+.+||...+.. ++|+...++.= .-..-.-+..
T Consensus 27 IK~aL~~~l~~~~e~--G~~w--fi~ggalG~d-~wAaEvvl~LK~~yp~lkL~~--~~PF~~q~~~W--~e~~q~~y~~ 97 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEW--VIISGQLGVE-LWAAEVVLELKEEYPDLKLAV--ITPFEEHGENW--NEANQEKLAN 97 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCE--EEECCcchHH-HHHHHHHHHHHhhCCCeEEEE--EeCccchhhcC--CHHHHHHHHH
Confidence 334455666666663 2332 2222222221 225556777999999766643 67874332211 1122234556
Q ss_pred HhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccc
Q 013439 192 LVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 240 (443)
Q Consensus 192 l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (443)
+.+.||-++.+...-- -.+..|..-|+.+...-+.+.+-+
T Consensus 98 i~~~aD~v~~vs~~~y---------~~p~q~~~rn~fmv~~sd~~i~~Y 137 (182)
T PRK13660 98 ILKQADFVKSISKRPY---------ESPAQFRQYNQFMLEHTDGALLVY 137 (182)
T ss_pred HHHhCCEEEEecCCCC---------CChHHHHHHHHHHHHccCeEEEEE
Confidence 7778999998843211 001236667887777666665543
No 44
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=40.95 E-value=45 Score=28.89 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=35.9
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhh
Q 013439 103 KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREE 158 (443)
Q Consensus 103 ~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~ 158 (443)
+|++.....+...+...+++...++..-+-+++-||+||+. +..+...++..
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~l----A~l~a~~~~~~ 52 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGAL----AGLAGLDLRGR 52 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHH----HHHHHHHHHhc
Confidence 35666667777777777777777677777788889998665 44445555554
No 45
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=40.89 E-value=93 Score=31.13 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=55.9
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHHH
Q 013439 108 EGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 187 (443)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (443)
...+.+..+.+.|++.+++ .+||.|+|+.+ | --.++..|..+-+. +|-.+++=+-.|....+..-......++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--T-meeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--T-MEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--c-HHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 4567777778888777663 78999999776 4 24556666655444 5656666677886443333344444444
Q ss_pred HHHHHhh--cCCeeEEecCcchhh
Q 013439 188 SVHQLVE--NADECMVLDNEALYD 209 (443)
Q Consensus 188 sl~~l~e--~sd~~i~~dN~~l~~ 209 (443)
......+ .....+.|+ +.++.
T Consensus 133 ~~A~~~~~~~~gV~V~f~-~~i~~ 155 (323)
T cd00411 133 YVAANYDSRGRGVLVVFN-DRIFR 155 (323)
T ss_pred HHHcCcccCCCeEEEEEC-CEEec
Confidence 4443322 345566664 44543
No 46
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=39.82 E-value=92 Score=30.96 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=49.4
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCC-CcccchhhHHH
Q 013439 108 EGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV-SDTVVEPYNAT 186 (443)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~-~~~~~~~yN~~ 186 (443)
...+.+..+.+.|++.+++ .+||.|+|+.+ | --.++.++..+-+..+|-.+++=+..|.... +|....-++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--T-me~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--T-MEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--T-HHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--H-HHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 4566777777888777744 89999999776 3 2345556666555545556667678886433 34444444444
Q ss_pred HHHHHHhhcCCeeEEecCcchhh
Q 013439 187 LSVHQLVENADECMVLDNEALYD 209 (443)
Q Consensus 187 lsl~~l~e~sd~~i~~dN~~l~~ 209 (443)
....+- +..-.+++| |+.++.
T Consensus 128 ~~A~~~-~~~GV~v~f-~~~i~~ 148 (313)
T PF00710_consen 128 RVAASP-AGPGVLVVF-NGRIYA 148 (313)
T ss_dssp HHHHSG-GTSSEEEEE-TTEEEE
T ss_pred HHHhcc-cCCceEEEe-CCCccc
Confidence 333332 344445555 444543
No 47
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=36.59 E-value=10 Score=32.09 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=35.8
Q ss_pred ccccccch-hhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCC
Q 013439 103 KGHYTEGA-ELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPD 161 (443)
Q Consensus 103 ~G~~~~g~-~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~ 161 (443)
.|++..-. ...+.+.+.|+..+++.....-...=||+||+ ++..+.-.+....+.
T Consensus 36 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 36 SGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 45544444 66778888888888877655555667788765 456566666665543
No 48
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=34.98 E-value=45 Score=31.11 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=41.5
Q ss_pred CCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcC
Q 013439 99 NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYP 160 (443)
Q Consensus 99 nnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp 160 (443)
....+|++.....+.+.+...++...+++...+-+..-||+||+. ++.+.-.|+..++
T Consensus 97 ~~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGai----A~l~a~~l~~~~~ 154 (229)
T cd00519 97 GKVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGAL----ASLLALDLRLRGP 154 (229)
T ss_pred cEEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHHH----HHHHHHHHHhhCC
Confidence 334567777667778888888888888887777788889998654 4555555665543
No 49
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=33.86 E-value=40 Score=28.82 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhcCC-CCCceeeecCCCCccccchH-HHHHHHH
Q 013439 113 IDSVLDVVRKEAENCDC-LQGFQICHSLGGGTGSGMGT-LLISKIR 156 (443)
Q Consensus 113 ~~~~~d~ir~~~E~cd~-lqgf~i~~s~~GGtGSG~~s-~lle~l~ 156 (443)
...+.++|++.+|+++. =+|+.++.++ ||+ =+.. ..++.+.
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~ 83 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLE 83 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhc
Confidence 34556788888899866 7999999999 664 2322 3455554
No 50
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=32.34 E-value=1.4e+02 Score=30.88 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=54.9
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCC-CCcccchhhHHH
Q 013439 108 EGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPK-VSDTVVEPYNAT 186 (443)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~-~~~~~~~~yN~~ 186 (443)
...+.|..+.+.|+..++ +..+||.|+|+.+ | =-.++..|..+-+..|+=.+++=+-.|... .+|....-++++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--T-M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--T-MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--h-HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 446677777888877765 4469999999776 4 255666666544444555556666777643 334444444444
Q ss_pred HHHHHHhhcCCeeEEecCc
Q 013439 187 LSVHQLVENADECMVLDNE 205 (443)
Q Consensus 187 lsl~~l~e~sd~~i~~dN~ 205 (443)
. ++.- ..+-..++|+.+
T Consensus 195 ~-~A~~-~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 R-AATS-PIAEVTVVMHGE 211 (404)
T ss_pred H-HHhC-CCCcEEEEECCc
Confidence 3 3322 455566777654
No 51
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=31.82 E-value=1.5e+02 Score=29.92 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=56.5
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHHH
Q 013439 108 EGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 187 (443)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (443)
...+.|..+.+.|+...++ .+||.|+|+.+ | =-.++..|..+-+. +|-.+++=+-.|....+..-......++
T Consensus 59 ~tp~~w~~la~~I~~~~~~---~dG~VVtHGTD--T-me~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDD---YDGFVITHGTD--T-MAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCeEEEccCCc--h-HHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 4567777888888777663 78999999876 4 25566666655444 5656666667886443333333333444
Q ss_pred HHHHHhhc-----CCeeEEecCcchhh
Q 013439 188 SVHQLVEN-----ADECMVLDNEALYD 209 (443)
Q Consensus 188 sl~~l~e~-----sd~~i~~dN~~l~~ 209 (443)
......+. -..++++=|+.++.
T Consensus 132 ~~A~~~~~~~~i~~~gV~v~f~~~i~~ 158 (336)
T TIGR00519 132 RAATEYIAEVTVCMHGVTLDFNCRLHR 158 (336)
T ss_pred HHHcCccccccccCceeEEEccCeEee
Confidence 44433231 22455555666654
No 52
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=31.19 E-value=39 Score=27.31 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=20.6
Q ss_pred CCceeeecCCCCccccchHHHHHHHHh
Q 013439 131 QGFQICHSLGGGTGSGMGTLLISKIRE 157 (443)
Q Consensus 131 qgf~i~~s~~GGtGSG~~s~lle~l~d 157 (443)
.+|.|+.+...|+|+.+-+.|++.|.-
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 477999999999987777777777644
No 53
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=30.26 E-value=28 Score=31.29 Aligned_cols=36 Identities=17% Similarity=0.408 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHh--hcccccccccccCCCCChhh
Q 013439 372 TSIQEMFRRVSEQFTV--MFKRKAFLHWYTGEGMDEME 407 (443)
Q Consensus 372 t~i~~~l~~l~~~~~~--m~~krAflh~Y~~~G~ee~e 407 (443)
.-|...+.+|.+-+.. =|..-.||+||+.|+.||+.
T Consensus 95 q~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~ 132 (167)
T COG1528 95 QKVTSSINELAEVAREEKDYATFNFLQWFVAEQVEEEK 132 (167)
T ss_pred HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 3445555555544443 35677899999999988754
No 54
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=29.21 E-value=1.7e+02 Score=29.16 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=52.5
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCC-cccchhhHHH
Q 013439 108 EGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVS-DTVVEPYNAT 186 (443)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 186 (443)
...+.|..+.+.|+..+.. +..+||.|+|+.+ | --.++.++..+-+..+|-.+++=+-.|....+ |....-++++
T Consensus 57 ~t~~~w~~la~~i~~~~~~-~~~dG~VVtHGTD--T-meeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av 132 (323)
T smart00870 57 MTPADWLKLAKRINEALAD-DGYDGVVVTHGTD--T-LEETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHhcc-CCCCEEEEecCCc--c-HHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHH
Confidence 3456666666776654432 5789999999776 4 24556666655454455556666677764333 3333333333
Q ss_pred HHHHHHhh--cCCeeEEecCcchhh
Q 013439 187 LSVHQLVE--NADECMVLDNEALYD 209 (443)
Q Consensus 187 lsl~~l~e--~sd~~i~~dN~~l~~ 209 (443)
..+.-.+ ..-..++| |+.++.
T Consensus 133 -~~A~~~~a~~~GV~V~f-~~~i~~ 155 (323)
T smart00870 133 -RVAASPEARGRGVLVVF-NDEIHR 155 (323)
T ss_pred -HHHcCcccCCCEEEEEE-CCEeee
Confidence 3332222 23344444 555654
No 55
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=27.71 E-value=1.3e+02 Score=30.04 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcc
Q 013439 111 ELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTG 144 (443)
Q Consensus 111 ~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtG 144 (443)
+-.+++.++++..+++.+.=+|++++.++-|||-
T Consensus 40 ~~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 40 ENAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 3446677788888888877789999999999985
No 56
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=26.03 E-value=1.6e+02 Score=29.97 Aligned_cols=102 Identities=21% Similarity=0.313 Sum_probs=68.6
Q ss_pred ccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEE
Q 013439 89 NFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFS 168 (443)
Q Consensus 89 ~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~ 168 (443)
|-++|+.|+..-|.-= ...-.++.+++...++.+.|.-..--|..+..-.++|.+.|+|.-|+-.+.-++
T Consensus 196 nPL~G~~GAs~vFGPQ-KGat~~~v~~lD~~l~hfa~~~~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l--------- 265 (378)
T COG1929 196 NPLCGPQGASAVFGPQ-KGATPEMVEELDQALSHFAEVLEQATGKDVIDVPGAGAAGGMGAGLLAFLQAEL--------- 265 (378)
T ss_pred CCCcCCCCceeeecCc-cCCCHHHHHHHHHHHHHHHHHHHHHhcchhhcCCCCccchhHHHHHHHHhhCcc---------
Confidence 3345555555444311 112367888899999999888777777778888888888899998887765432
Q ss_pred EecCCCCCcccchhhHHHHHHHHHhhcCCeeEE----ecCcchh
Q 013439 169 VFPSPKVSDTVVEPYNATLSVHQLVENADECMV----LDNEALY 208 (443)
Q Consensus 169 v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~----~dN~~l~ 208 (443)
.|. .+..=.++.|....+-||+||. +|++.+.
T Consensus 266 -~~G-------i~iV~~~~~le~~v~daDLVITGEGr~D~Qs~~ 301 (378)
T COG1929 266 -KSG-------IEIVLEATNLEDAVKDADLVITGEGRIDSQSLH 301 (378)
T ss_pred -ccc-------HHHHHHHhCHHHhhccCCEEEeCCCcccccccC
Confidence 222 2334456678888899999985 5666653
No 57
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.76 E-value=2.2e+02 Score=27.77 Aligned_cols=74 Identities=27% Similarity=0.308 Sum_probs=47.1
Q ss_pred HHHHHHHhhcCCCCCceeeecCCCCccccch-----HHHHHHHHhhcCCcee-eEEEEecCCCCCcccchhhHHHHHHHH
Q 013439 118 DVVRKEAENCDCLQGFQICHSLGGGTGSGMG-----TLLISKIREEYPDRMM-MTFSVFPSPKVSDTVVEPYNATLSVHQ 191 (443)
Q Consensus 118 d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~-----s~lle~l~d~yp~~~i-~~~~v~P~~~~~~~~~~~yN~~lsl~~ 191 (443)
++|++.++.+ +||.-+.|..|-||.-.. ..+++++|.-- ++++ ..|+|-. .-...+
T Consensus 161 ~rl~~i~~~a---~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~--------------~e~~~~ 222 (265)
T COG0159 161 ERLKKIAEAA---SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISS--------------PEQAAQ 222 (265)
T ss_pred HHHHHHHHhC---CCcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCC--------------HHHHHH
Confidence 5666666665 799999999999987554 44567777654 4443 4454421 123456
Q ss_pred HhhcCCeeEEecCcchhhhh
Q 013439 192 LVENADECMVLDNEALYDIC 211 (443)
Q Consensus 192 l~e~sd~~i~~dN~~l~~~~ 211 (443)
+.+.+|.+++= +++.+..
T Consensus 223 v~~~ADGVIVG--SAiV~~i 240 (265)
T COG0159 223 VAEAADGVIVG--SAIVKII 240 (265)
T ss_pred HHHhCCeEEEc--HHHHHHH
Confidence 66778998874 3554444
No 58
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=25.18 E-value=76 Score=31.99 Aligned_cols=40 Identities=25% Similarity=0.502 Sum_probs=28.5
Q ss_pred HHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEE
Q 013439 123 EAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTF 167 (443)
Q Consensus 123 ~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~ 167 (443)
.++.+..+.|+....++|||+| ..+=..++ .||+...+.+
T Consensus 168 il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~-~fp~ik~inf 207 (342)
T KOG3178|consen 168 ILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS-KYPHIKGINF 207 (342)
T ss_pred hhhhhcccccCceEEEcCCcHh----HHHHHHHH-hCCCCceeec
Confidence 3666777888999999998876 33334445 8998766654
No 59
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=25.10 E-value=98 Score=30.16 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=29.8
Q ss_pred CCCCcccccccchhhHHHHH-HHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEE
Q 013439 98 GNNWAKGHYTEGAELIDSVL-DVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFS 168 (443)
Q Consensus 98 gnnwa~G~~~~g~~~~~~~~-d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~ 168 (443)
.-.++-|||..+.+-.++.. .++...+|+++-=.| .-+-++|.||| |++ -.+...| +..+.++.
T Consensus 28 ~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~~~----~~~a~~~-g~~v~git 92 (273)
T PF02353_consen 28 TMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-GLA----IYAAERY-GCHVTGIT 92 (273)
T ss_dssp T---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-HHH----HHHHHHH---EEEEEE
T ss_pred CCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-HHH----HHHHHHc-CcEEEEEE
Confidence 35677788877777666655 556777888754344 45668887776 443 3344556 44444443
No 60
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=24.22 E-value=78 Score=29.86 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=22.0
Q ss_pred eeecCCCCccccchHHHHHHHHhhcCCc
Q 013439 135 ICHSLGGGTGSGMGTLLISKIREEYPDR 162 (443)
Q Consensus 135 i~~s~~GGtGSG~~s~lle~l~d~yp~~ 162 (443)
++-+++||.|||= +.++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5668999999998 45889999999855
No 61
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=23.62 E-value=2.6e+02 Score=29.16 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=55.2
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCC-CCcccchhhHHH
Q 013439 108 EGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPK-VSDTVVEPYNAT 186 (443)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~-~~~~~~~~yN~~ 186 (443)
...+.|..+.+.|+..++. ..+||.|+|+.+ | =-.++..|..+- ..|+=.+++=+-.|... .+|....-++++
T Consensus 133 mtp~~W~~La~~I~~~~~~--~~dGvVVtHGTD--T-M~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIKN--GADGVVVAHGTD--T-MHYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCHHHHHHHHHHHHHHhhc--cCCeEEEecCCc--h-HHHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 4567778888888887763 589999999876 5 245666665544 44555556666777643 334444444444
Q ss_pred HHHHHHhhcCCeeEEecCc
Q 013439 187 LSVHQLVENADECMVLDNE 205 (443)
Q Consensus 187 lsl~~l~e~sd~~i~~dN~ 205 (443)
. ++. ...+-..+.|+.+
T Consensus 207 ~-~A~-~~~~gV~Vvf~g~ 223 (419)
T PRK04183 207 L-AAT-SDIAEVVVVMHGT 223 (419)
T ss_pred H-HHh-CCCCcEEEEECCc
Confidence 3 333 3455666677654
No 62
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=23.25 E-value=1.2e+02 Score=24.56 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=38.1
Q ss_pred eccCChhhHHHHHH-------HHHHHHhhcccccccccccCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 013439 367 FMGNSTSIQEMFRR-------VSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426 (443)
Q Consensus 367 ~l~Nst~i~~~l~~-------l~~~~~~m~~krAflh~Y~~~G~ee~eF~ea~~~l~~l~~~Y~~~~ 426 (443)
.++|-++|...|.. +++.-.++--+|+| |++--=.-.+..||+..|+.+..++.+=.
T Consensus 27 sIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~---~E~lQdkL~qi~eAR~AlDalR~eH~~kl 90 (96)
T PF12210_consen 27 SIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVY---YEGLQDKLAQIKEARAALDALREEHREKL 90 (96)
T ss_dssp -GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888887765 56667777777744 33211123569999999999999997643
No 63
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=23.13 E-value=2.4e+02 Score=24.65 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=39.2
Q ss_pred CCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeE
Q 013439 99 NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMT 166 (443)
Q Consensus 99 nnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~ 166 (443)
|-++..++ .|...-+.+.+.+...++.-|.=+|++++.++-|||-+-.+++ +..+.|...+++
T Consensus 29 nv~~v~~~-~~~~~~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~----l~~~~~~~~via 91 (143)
T COG2893 29 NVEAVDFV-PGEDSEDLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASR----LAMEGPRVEVIA 91 (143)
T ss_pred ceEEEEee-cCCChHHHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHH----HHhhCCCceEEe
Confidence 34444443 2334445555666666666777799999999999986544444 445566654443
No 64
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=22.46 E-value=2.9e+02 Score=21.16 Aligned_cols=52 Identities=13% Similarity=0.284 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhc--CCCCCceeeecCC----CCccccchHHHHHHHHhhcCCceeeEEEE
Q 013439 115 SVLDVVRKEAENC--DCLQGFQICHSLG----GGTGSGMGTLLISKIREEYPDRMMMTFSV 169 (443)
Q Consensus 115 ~~~d~ir~~~E~c--d~lqgf~i~~s~~----GGtGSG~~s~lle~l~d~yp~~~i~~~~v 169 (443)
+..+.++..++.| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-
T Consensus 10 eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~ 67 (83)
T PF01713_consen 10 EALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRD 67 (83)
T ss_dssp HHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeee
Confidence 4445555555555 3567888999888 554 77777888877555555655543
No 65
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.43 E-value=2.5e+02 Score=25.35 Aligned_cols=92 Identities=15% Similarity=0.256 Sum_probs=48.5
Q ss_pred cccccchhhHHHHHHHHHHHHhhc--CCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccch
Q 013439 104 GHYTEGAELIDSVLDVVRKEAENC--DCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVE 181 (443)
Q Consensus 104 G~~~~g~~~~~~~~d~ir~~~E~c--d~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~ 181 (443)
|.+.....-.-.+.+.||+.+|.- +.+.=++|+..+| +- =-++-++-.|+++||+..+.+ ++|+...++.=
T Consensus 15 giF~~k~p~~~~IKkai~~~l~~lleeGleW~litGqLG--~E-~WA~Evv~eLk~eyp~ik~av--itpFe~q~~~W-- 87 (180)
T COG4474 15 GIFKDKDPEVSYIKKAIKKKLEALLEEGLEWVLITGQLG--FE-LWAAEVVIELKEEYPHIKLAV--ITPFEEQGKNW-- 87 (180)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhcCceEEEEecccc--HH-HHHHHHHHHHHhhCCCeeEEE--Eechhhhcccc--
Confidence 333333333344556666665542 5666667765442 31 225557778999999765543 57863333221
Q ss_pred hhHHHHHHHHHhhcCCeeEEe
Q 013439 182 PYNATLSVHQLVENADECMVL 202 (443)
Q Consensus 182 ~yN~~lsl~~l~e~sd~~i~~ 202 (443)
.-+.-+-++++.+.+|.+.-+
T Consensus 88 nE~nq~ky~~~l~~aD~v~~i 108 (180)
T COG4474 88 NEDNQMKYARILKAADFVKSI 108 (180)
T ss_pred CchhHHHHHHHHhhhhhhhhh
Confidence 113334455555666655433
No 66
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=22.16 E-value=1e+02 Score=23.12 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=19.3
Q ss_pred cccchHHHHHHHHhhcCCceeeE
Q 013439 144 GSGMGTLLISKIREEYPDRMMMT 166 (443)
Q Consensus 144 GSG~~s~lle~l~d~yp~~~i~~ 166 (443)
|-|+|+.|+..+.+.++.+.+..
T Consensus 40 g~Gig~~ll~~~~~~~~~~~i~l 62 (79)
T PF13508_consen 40 GKGIGSKLLNYLLEKAKSKKIFL 62 (79)
T ss_dssp TSSHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCcEEE
Confidence 46899999999999998877653
No 67
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=21.85 E-value=5.5e+02 Score=26.85 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCC---CCcccchhhHHHHH
Q 013439 112 LIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPK---VSDTVVEPYNATLS 188 (443)
Q Consensus 112 ~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~---~~~~~~~~yN~~ls 188 (443)
..+...+.|...+. .+.++++-|+.+...|+|+++.+.|++.|+.-=-...+++.---|... ....+..+.|--..
T Consensus 151 ~~~~Yi~~l~~~id-~~~~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~~~pdg~F~~~~p~P~~~~~l~~l 229 (456)
T PRK15414 151 LRDAYVDHLFGYIN-VKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDT 229 (456)
T ss_pred cHHHHHHHHHHhcc-cccCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCCCCCCHHHHHHH
Confidence 34445555544442 134579999999999999889888865554421111222221122111 11122222232222
Q ss_pred HHHH-hhcCCeeEEecCcc
Q 013439 189 VHQL-VENADECMVLDNEA 206 (443)
Q Consensus 189 l~~l-~e~sd~~i~~dN~~ 206 (443)
.... ...+|+.+.+|-|+
T Consensus 230 ~~~v~~~~adlGia~DgDa 248 (456)
T PRK15414 230 RNAVIKHGADMGIAFDGDF 248 (456)
T ss_pred HHHHHHcCCCEEEEECCCc
Confidence 2222 33489999998775
No 68
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=21.40 E-value=3.5e+02 Score=28.42 Aligned_cols=90 Identities=13% Similarity=0.194 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCC---CCCcccchhhHHHHH
Q 013439 112 LIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSP---KVSDTVVEPYNATLS 188 (443)
Q Consensus 112 ~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~---~~~~~~~~~yN~~ls 188 (443)
..+...+.|+..+..-..+.++-|+.+.+.|+|+.+.+.+++.|- ..++..-..|.. .....+....+..|.
T Consensus 158 ~~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG-----~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~ 232 (464)
T COG1109 158 ALDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELG-----AEVVSINCDPDGLFPNINPNPGETELLDLA 232 (464)
T ss_pred hHHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcC-----CEEEEecCCCCCCCCCCCCCCCCccHHHHH
Confidence 445555555555443246778999999999988777777776643 334444333321 112334444444333
Q ss_pred HHHHhhcCCeeEEecCcc
Q 013439 189 VHQLVENADECMVLDNEA 206 (443)
Q Consensus 189 l~~l~e~sd~~i~~dN~~ 206 (443)
..-....+|+.+-+|.|+
T Consensus 233 ~~v~~~~aDlgia~DgDa 250 (464)
T COG1109 233 KAVKEHGADLGIAFDGDA 250 (464)
T ss_pred HHHHhcCCCEEEEecCCC
Confidence 333334699999998876
No 69
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=21.06 E-value=1.4e+02 Score=31.85 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHh-hcCCCCCceeeecCCCCccccchHHHHHHHH
Q 013439 111 ELIDSVLDVVRKEAE-NCDCLQGFQICHSLGGGTGSGMGTLLISKIR 156 (443)
Q Consensus 111 ~~~~~~~d~ir~~~E-~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~ 156 (443)
+..+...+.|...+. +.....++-|+.+.+.|+|+.+.+.|++.|-
T Consensus 188 ~~~~~Y~~~l~~~v~~~~~~~~~lkVvvd~~~G~~~~~~~~ll~~lG 234 (522)
T cd05801 188 DFVTPYVADLGNVIDMDAIRKSGLRLGVDPLGGASVPYWQPIAEKYG 234 (522)
T ss_pred CcHHHHHHHHHHhhChhhhhcCCceEEEeCCCCccHHHHHHHHHHcC
Confidence 444555555554442 1112468999999999999888888888763
No 70
>PTZ00489 glutamate 5-kinase; Provisional
Probab=20.84 E-value=3.9e+02 Score=25.89 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=28.8
Q ss_pred HHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCc
Q 013439 155 IREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNE 205 (443)
Q Consensus 155 l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~ 205 (443)
..+.+.+..+.+..+++....-....+..|+.-++..|.+. .++|+=|+
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 44444444555555666533333344455888888888887 56677443
No 71
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=20.75 E-value=43 Score=16.05 Aligned_cols=8 Identities=75% Similarity=1.427 Sum_probs=5.6
Q ss_pred hcccccCC
Q 013439 255 VNLIPFPR 262 (443)
Q Consensus 255 ~~L~p~p~ 262 (443)
..|+||||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 35778887
No 72
>PLN02371 phosphoglucosamine mutase family protein
Probab=20.14 E-value=2.3e+02 Score=30.89 Aligned_cols=71 Identities=17% Similarity=0.355 Sum_probs=41.8
Q ss_pred CCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEE-----EecCCCCCcccchhhHHHHHHHHH-hhcCCeeEEec
Q 013439 130 LQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFS-----VFPSPKVSDTVVEPYNATLSVHQL-VENADECMVLD 203 (443)
Q Consensus 130 lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~-----v~P~~~~~~~~~~~yN~~lsl~~l-~e~sd~~i~~d 203 (443)
++++-|+.+.+.|+|+++.+.+++.|--+ .+...- .||.. ......+.|--...... ...+|+.|.+|
T Consensus 261 ~~~lkIvvD~~nGag~~~~~~lL~~LG~~----v~~~~~~~pDg~Fp~~--~P~P~~~~~l~~l~~~v~~~~aDlGia~D 334 (583)
T PLN02371 261 LEGFKIVVDAGNGAGGFFAEKVLEPLGAD----TSGSLFLEPDGMFPNH--IPNPEDKAAMSATTQAVLANKADLGIIFD 334 (583)
T ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCC----eEeeccCCCCCCCCCc--CCCCCCHHHHHHHHHHHHhcCCCEEEEEC
Confidence 57999999999999988888888876322 111111 22221 11222233333322222 34489999998
Q ss_pred Ccc
Q 013439 204 NEA 206 (443)
Q Consensus 204 N~~ 206 (443)
-|+
T Consensus 335 gDa 337 (583)
T PLN02371 335 TDV 337 (583)
T ss_pred CCc
Confidence 776
Done!