Query 013440
Match_columns 443
No_of_seqs 166 out of 2209
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:52:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 2.6E-26 5.6E-31 248.3 23.2 314 59-411 589-910 (1153)
2 PLN00113 leucine-rich repeat r 99.9 1.6E-25 3.4E-30 241.5 22.8 195 33-240 89-292 (968)
3 PLN00113 leucine-rich repeat r 99.9 3.1E-25 6.8E-30 239.2 22.6 358 32-412 159-565 (968)
4 KOG4194 Membrane glycoprotein 99.9 1.2E-23 2.5E-28 197.4 4.4 340 35-401 100-446 (873)
5 KOG4194 Membrane glycoprotein 99.9 3.9E-23 8.3E-28 194.0 7.2 341 37-405 78-427 (873)
6 KOG4658 Apoptotic ATPase [Sign 99.9 1.6E-22 3.4E-27 208.8 10.7 361 1-413 483-866 (889)
7 PLN03210 Resistant to P. syrin 99.9 1.9E-20 4.1E-25 203.0 23.2 378 1-414 490-889 (1153)
8 KOG0444 Cytoskeletal regulator 99.8 5.4E-23 1.2E-27 194.5 -4.1 325 32-385 50-379 (1255)
9 KOG0444 Cytoskeletal regulator 99.8 1.3E-22 2.8E-27 191.9 -1.8 342 37-413 32-381 (1255)
10 KOG0472 Leucine-rich repeat pr 99.8 7.1E-22 1.5E-26 177.8 -8.7 229 32-268 63-308 (565)
11 KOG0618 Serine/threonine phosp 99.7 6.7E-18 1.4E-22 167.0 -1.8 347 39-406 23-488 (1081)
12 KOG0472 Leucine-rich repeat pr 99.6 2.3E-17 5E-22 149.0 -0.3 109 32-143 201-310 (565)
13 KOG0618 Serine/threonine phosp 99.6 5.2E-17 1.1E-21 160.8 -1.5 209 154-382 242-490 (1081)
14 KOG0617 Ras suppressor protein 99.6 2.2E-17 4.9E-22 132.3 -4.9 165 50-228 24-191 (264)
15 KOG0617 Ras suppressor protein 99.6 7.7E-17 1.7E-21 129.3 -4.1 164 27-195 23-190 (264)
16 PRK15387 E3 ubiquitin-protein 99.6 7.5E-14 1.6E-18 142.0 16.3 256 85-405 201-456 (788)
17 PRK15387 E3 ubiquitin-protein 99.5 2E-13 4.4E-18 138.9 17.5 255 37-350 201-455 (788)
18 PRK15370 E3 ubiquitin-protein 99.5 5.5E-13 1.2E-17 136.4 14.4 250 34-322 175-426 (754)
19 PRK15370 E3 ubiquitin-protein 99.4 6.8E-13 1.5E-17 135.8 10.9 228 35-297 197-428 (754)
20 cd00116 LRR_RI Leucine-rich re 99.3 4.3E-13 9.4E-18 126.5 3.9 83 82-164 78-176 (319)
21 KOG4658 Apoptotic ATPase [Sign 99.3 1.7E-12 3.6E-17 135.0 7.3 315 29-386 537-865 (889)
22 cd00116 LRR_RI Leucine-rich re 99.3 8.3E-13 1.8E-17 124.6 3.1 11 311-321 250-260 (319)
23 KOG4237 Extracellular matrix p 99.3 8.3E-14 1.8E-18 126.0 -4.8 284 48-348 57-354 (498)
24 KOG4237 Extracellular matrix p 99.2 8.4E-13 1.8E-17 119.6 -1.0 250 34-296 64-358 (498)
25 KOG4341 F-box protein containi 99.2 9.4E-13 2E-17 120.2 -2.9 308 59-399 138-457 (483)
26 PF14580 LRR_9: Leucine-rich r 99.2 3E-11 6.4E-16 101.3 5.0 108 32-143 14-126 (175)
27 KOG4341 F-box protein containi 99.2 9.5E-13 2.1E-17 120.1 -4.6 290 109-410 139-442 (483)
28 PF14580 LRR_9: Leucine-rich r 99.1 8.3E-11 1.8E-15 98.6 5.1 104 57-164 17-124 (175)
29 KOG0532 Leucine-rich repeat (L 99.0 2.5E-11 5.3E-16 115.1 -2.6 182 34-231 72-255 (722)
30 KOG3207 Beta-tubulin folding c 99.0 2E-10 4.3E-15 105.8 1.8 201 57-267 119-336 (505)
31 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.7E-15 100.6 -0.2 184 34-228 211-417 (490)
32 KOG2120 SCF ubiquitin ligase, 98.9 6.6E-11 1.4E-15 103.7 -3.9 190 154-384 186-379 (419)
33 KOG3207 Beta-tubulin folding c 98.9 2.9E-10 6.4E-15 104.7 -0.3 138 82-227 118-263 (505)
34 KOG0532 Leucine-rich repeat (L 98.8 3.1E-10 6.7E-15 107.8 -2.5 190 41-246 54-248 (722)
35 COG4886 Leucine-rich repeat (L 98.7 1.4E-08 3E-13 98.7 6.1 175 82-270 113-290 (394)
36 KOG2120 SCF ubiquitin ligase, 98.7 4.4E-10 9.6E-15 98.6 -3.9 182 130-350 185-373 (419)
37 COG4886 Leucine-rich repeat (L 98.7 1.7E-08 3.6E-13 98.2 6.4 188 41-242 97-287 (394)
38 KOG1259 Nischarin, modulator o 98.7 1.4E-09 3E-14 95.6 -1.2 128 33-164 280-410 (490)
39 KOG1909 Ran GTPase-activating 98.5 1.3E-08 2.9E-13 91.4 -0.6 62 208-269 155-225 (382)
40 PLN03150 hypothetical protein; 98.4 7.5E-07 1.6E-11 91.1 8.8 105 109-222 419-527 (623)
41 PLN03150 hypothetical protein; 98.4 1.1E-06 2.3E-11 90.0 9.3 103 86-189 419-526 (623)
42 PF13855 LRR_8: Leucine rich r 98.4 3.9E-07 8.4E-12 62.6 3.9 57 60-118 2-59 (61)
43 KOG3665 ZYG-1-like serine/thre 98.4 1.5E-07 3.2E-12 96.1 2.5 146 37-184 122-281 (699)
44 PF13855 LRR_8: Leucine rich r 98.3 3.6E-07 7.8E-12 62.8 3.1 58 85-142 1-61 (61)
45 KOG1909 Ran GTPase-activating 98.3 2.6E-07 5.6E-12 83.3 1.8 205 36-244 57-310 (382)
46 KOG1859 Leucine-rich repeat pr 98.2 1.2E-08 2.6E-13 99.8 -8.4 101 86-190 165-266 (1096)
47 KOG3665 ZYG-1-like serine/thre 98.1 2.5E-06 5.3E-11 87.3 4.6 136 84-222 121-262 (699)
48 KOG0531 Protein phosphatase 1, 98.0 5.3E-07 1.1E-11 88.0 -2.0 128 58-191 71-199 (414)
49 PF12799 LRR_4: Leucine Rich r 98.0 9.4E-06 2E-10 51.2 4.3 37 86-122 2-38 (44)
50 KOG0531 Protein phosphatase 1, 98.0 1.3E-06 2.9E-11 85.2 -0.4 188 35-239 70-262 (414)
51 KOG2982 Uncharacterized conser 98.0 3.3E-06 7.1E-11 74.7 1.8 92 284-383 173-264 (418)
52 KOG2982 Uncharacterized conser 97.9 4.6E-06 1E-10 73.8 1.9 85 79-163 65-156 (418)
53 KOG1859 Leucine-rich repeat pr 97.9 3.9E-07 8.5E-12 89.6 -5.9 153 32-190 104-291 (1096)
54 KOG1947 Leucine rich repeat pr 97.7 5.4E-06 1.2E-10 82.8 -0.4 247 151-412 186-445 (482)
55 PF12799 LRR_4: Leucine Rich r 97.7 7E-05 1.5E-09 47.2 4.3 33 131-163 2-34 (44)
56 KOG4579 Leucine-rich repeat (L 97.6 4.9E-06 1.1E-10 65.2 -2.4 106 40-147 30-140 (177)
57 KOG1644 U2-associated snRNP A' 97.5 0.00019 4.2E-09 60.2 5.9 99 60-162 43-149 (233)
58 KOG1644 U2-associated snRNP A' 97.5 0.00034 7.4E-09 58.8 7.1 102 37-140 42-150 (233)
59 PRK15386 type III secretion pr 97.5 0.00019 4.1E-09 68.1 5.8 32 368-404 156-187 (426)
60 PRK15386 type III secretion pr 97.4 0.00072 1.6E-08 64.2 8.8 134 33-188 48-187 (426)
61 KOG1947 Leucine rich repeat pr 97.4 4.4E-05 9.5E-10 76.3 0.7 144 254-404 185-331 (482)
62 KOG2123 Uncharacterized conser 97.4 8.5E-06 1.8E-10 71.5 -3.9 106 107-216 18-123 (388)
63 KOG4579 Leucine-rich repeat (L 97.4 2.2E-05 4.7E-10 61.7 -1.7 101 61-162 29-132 (177)
64 COG5238 RNA1 Ran GTPase-activa 97.1 0.00016 3.5E-09 63.5 1.1 126 254-384 182-318 (388)
65 KOG3864 Uncharacterized conser 96.7 0.00031 6.6E-09 59.1 -0.6 40 367-407 150-189 (221)
66 KOG2123 Uncharacterized conser 96.6 0.00018 3.8E-09 63.4 -3.1 98 57-159 17-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.5 0.0021 4.5E-08 56.4 3.1 80 83-163 41-126 (260)
68 KOG2739 Leucine-rich acidic nu 96.3 0.0018 3.9E-08 56.8 1.7 84 57-144 41-130 (260)
69 KOG3864 Uncharacterized conser 95.9 0.00084 1.8E-08 56.5 -2.2 70 309-384 123-192 (221)
70 PF13306 LRR_5: Leucine rich r 95.7 0.029 6.3E-07 44.7 5.8 56 57-116 10-66 (129)
71 COG5238 RNA1 Ran GTPase-activa 95.6 0.026 5.5E-07 50.1 5.5 226 35-282 56-328 (388)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.0068 1.5E-07 31.7 1.2 21 86-106 1-21 (22)
73 PF13306 LRR_5: Leucine rich r 95.5 0.04 8.6E-07 43.9 6.2 105 77-187 4-112 (129)
74 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.5E-07 30.8 0.6 19 132-150 2-20 (22)
75 PF13504 LRR_7: Leucine rich r 92.3 0.1 2.2E-06 25.2 1.5 15 86-100 2-16 (17)
76 smart00367 LRR_CC Leucine-rich 91.4 0.095 2.1E-06 28.5 0.9 18 368-385 2-19 (26)
77 smart00367 LRR_CC Leucine-rich 91.4 0.11 2.4E-06 28.2 1.2 18 393-410 1-18 (26)
78 smart00369 LRR_TYP Leucine-ric 86.3 0.82 1.8E-05 24.6 2.4 19 130-148 2-20 (26)
79 smart00370 LRR Leucine-rich re 86.3 0.82 1.8E-05 24.6 2.4 19 130-148 2-20 (26)
80 KOG0473 Leucine-rich repeat pr 82.2 0.031 6.6E-07 48.4 -6.8 84 57-143 40-124 (326)
81 KOG4308 LRR-containing protein 78.5 0.091 2E-06 51.9 -6.0 15 335-349 399-413 (478)
82 KOG0473 Leucine-rich repeat pr 74.8 0.082 1.8E-06 45.9 -6.4 89 81-169 38-127 (326)
83 smart00364 LRR_BAC Leucine-ric 65.8 4.5 9.7E-05 22.0 1.4 18 130-147 2-19 (26)
84 KOG3763 mRNA export factor TAP 62.1 3.2 7E-05 41.0 0.7 93 254-348 215-309 (585)
85 PF13516 LRR_6: Leucine Rich r 62.0 5.4 0.00012 20.9 1.3 14 85-98 2-15 (24)
86 smart00365 LRR_SD22 Leucine-ri 55.5 11 0.00024 20.5 1.8 14 130-143 2-15 (26)
87 smart00368 LRR_RI Leucine rich 47.2 16 0.00035 20.0 1.7 14 85-98 2-15 (28)
88 KOG3763 mRNA export factor TAP 37.7 23 0.00049 35.3 2.1 39 57-95 216-254 (585)
89 KOG4308 LRR-containing protein 22.2 6.5 0.00014 39.1 -4.6 185 33-222 111-330 (478)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=2.6e-26 Score=248.26 Aligned_cols=314 Identities=21% Similarity=0.276 Sum_probs=225.9
Q ss_pred CCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCC-CCCcccccCCCCCCEEEc
Q 013440 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE-LADIAAIGQLKKLEILSL 137 (443)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~-l~~~~~~~~l~~L~~L~l 137 (443)
++|+.|.+.++.. ..+|..+ ...+|+.|++.++.+..++..+..+++|++++++++. +..++.++.+++|+.|++
T Consensus 589 ~~Lr~L~~~~~~l--~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYPL--RCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCCC--CCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe
Confidence 4577777777763 6666654 5688888999888888888888888899999998876 444666788889999999
Q ss_pred CCC-CCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEE
Q 013440 138 AYS-NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (443)
Q Consensus 138 ~~~-~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (443)
++| .+..+|..+.++++|+.|++++|...+.+|.. ..+++|+.|++++|......+ ....+|+.|+
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~p-----------~~~~nL~~L~ 731 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKSFP-----------DISTNISWLD 731 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCccccc-----------cccCCcCeee
Confidence 888 56688888889999999999988888888874 278889999988875432221 1245788999
Q ss_pred eecCCCCCCCCccccccCcEEEEEecCC---CCCC---CCchhcccccceeEEEcCccccccccccchhhHhhcccceee
Q 013440 217 IEVPDAEILPPDFVSVELQRYKIRIGDG---PEDE---FDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLW 290 (443)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~l~l~~~~~---~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 290 (443)
+++|.+..+|..+.+++|+.|.+..... +... .......+++|+.|++++|.....+ +..+..+ ++|+.|+
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l--P~si~~L-~~L~~L~ 808 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL--PSSIQNL-HKLEHLE 808 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc--ChhhhCC-CCCCEEE
Confidence 9999888888776667888777643211 0000 0001123567888888887654443 3344443 7888889
Q ss_pred ccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccccccccc
Q 013440 291 LETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNL 370 (443)
Q Consensus 291 L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L 370 (443)
+++|..+..++... .+++|++|++++|..++.++ ....+|+.|++.+ +.++++|.. ...+++|
T Consensus 809 Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p--------~~~~nL~~L~Ls~-n~i~~iP~s----i~~l~~L 871 (1153)
T PLN03210 809 IENCINLETLPTGI----NLESLESLDLSGCSRLRTFP--------DISTNISDLNLSR-TGIEEVPWW----IEKFSNL 871 (1153)
T ss_pred CCCCCCcCeeCCCC----CccccCEEECCCCCcccccc--------ccccccCEeECCC-CCCccChHH----HhcCCCC
Confidence 88888777766532 57888889998888776543 1235677888776 366666543 3568888
Q ss_pred ceeeeccCcCcccccChhhhhcccccceeeeccCccccccc
Q 013440 371 RIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII 411 (443)
Q Consensus 371 ~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~ 411 (443)
+.|++.+|++++.++.. ...++.|+.+++.+|++++++.
T Consensus 872 ~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CEEECCCCCCcCccCcc--cccccCCCeeecCCCccccccc
Confidence 88888888888888743 4667888888888888887653
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.6e-25 Score=241.49 Aligned_cols=195 Identities=20% Similarity=0.236 Sum_probs=113.8
Q ss_pred hccCCCCeEEeCCCCCCC-CCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccc-cccccccCCC
Q 013440 33 ETIQKDPIAISLPHRDIQ-ELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLI 108 (443)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~p~~l~~l~ 108 (443)
...++.++.|++++|.+. .+|... .+++|+.|++++|.. ...+|. ..+++|++|++++|.+. .+|..++.++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l-~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF-TGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc-ccccCc---cccCCCCEEECcCCcccccCChHHhcCC
Confidence 345677788888877773 555433 667777777777765 444443 34566666666666665 3556666666
Q ss_pred CCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC-CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEc
Q 013440 109 NLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (443)
Q Consensus 109 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 185 (443)
+|++|++++|.+.. +..++++++|++|++++|.+. .+|..++++++|+.|++++|...+.+|.. ++.+++|++|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence 66666666666543 455666666666666666555 45556666666666666665555555554 556666666666
Q ss_pred cCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCC-CCCCcc-ccccCcEEEEE
Q 013440 186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDF-VSVELQRYKIR 240 (443)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l~l~ 240 (443)
++|.+....+ ..++.+++|++|++++|.+. .+|..+ .+++|+.+++.
T Consensus 244 ~~n~l~~~~p--------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 244 VYNNLTGPIP--------SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred cCceeccccC--------hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 6665443332 44555555555555555542 333332 23455555543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=3.1e-25 Score=239.19 Aligned_cols=358 Identities=17% Similarity=0.108 Sum_probs=221.5
Q ss_pred hhccCCCCeEEeCCCCCC-CCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-ccccccCCC
Q 013440 32 EETIQKDPIAISLPHRDI-QELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLI 108 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~-~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p~~l~~l~ 108 (443)
..+.++++++|++++|.+ ..+|... ++++|++|++++|.. ...+|..+ .++.+|++|++++|.+.. +|..++.++
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL-VGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC-cCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCC
Confidence 466788899999998887 4555544 788899999988886 55666654 788888888888888764 777888888
Q ss_pred CCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC-CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEc
Q 013440 109 NLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (443)
Q Consensus 109 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 185 (443)
+|++|++++|.+.. +..++++++|++|++++|.+. .+|..+.++++|+.|++++|.+.+.+|.. +..+++|+.|++
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l 315 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHL 315 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEEC
Confidence 88888888888765 567788888888888888776 56777778888888888887766666654 677778888888
Q ss_pred cCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCC-CCCCcc-ccccCcEEEEEecCCCC-----------------
Q 013440 186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDF-VSVELQRYKIRIGDGPE----------------- 246 (443)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l~l~~~~~~~----------------- 246 (443)
++|.+....+ ..++.+++|+.|++++|.+. .+|..+ ..++|+.+++..+....
T Consensus 316 ~~n~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 316 FSNNFTGKIP--------VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCCccCCcCC--------hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 7776654433 44555666666666666553 344333 23455555553221110
Q ss_pred ------CCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEec
Q 013440 247 ------DEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTD 320 (443)
Q Consensus 247 ------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 320 (443)
......+..+++|+.|++.+|.+.+.. +..+... ++|+.|++++|.....++..+. .+++|+.|++.+
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~ 461 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL--PSEFTKL-PLVYFLDISNNNLQGRINSRKW---DMPSLQMLSLAR 461 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--ChhHhcC-CCCCEEECcCCcccCccChhhc---cCCCCcEEECcC
Confidence 011123445666777777776654433 2223322 5666666666554443333222 455666666665
Q ss_pred ccCceeeccc------------------ccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcc
Q 013440 321 CSEILHIVGS------------------VRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLK 382 (443)
Q Consensus 321 ~~~l~~~~~~------------------~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~ 382 (443)
|.....++.. ........+++|+.|+++++.-...++.. ...+++|++|++++|.-..
T Consensus 462 n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~ 537 (968)
T PLN00113 462 NKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE----LSSCKKLVSLDLSHNQLSG 537 (968)
T ss_pred ceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH----HcCccCCCEEECCCCcccc
Confidence 5322222100 00012234556666666664322222221 3457778888887765444
Q ss_pred cccChhhhhcccccceeeeccCcccccccc
Q 013440 383 YLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412 (443)
Q Consensus 383 ~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~ 412 (443)
.+| .....+++|+.|++++|.-...+|.
T Consensus 538 ~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 538 QIP--ASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred cCC--hhHhCcccCCEEECCCCcccccCCh
Confidence 444 3356788888888888865545543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.2e-23 Score=197.44 Aligned_cols=340 Identities=15% Similarity=0.171 Sum_probs=154.9
Q ss_pred cCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcE
Q 013440 35 IQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQT 112 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~ 112 (443)
++++++.+++..|.++.+|.+. ...+|+.|++.+|.+ ..+..+-++-++.||.||++.|.++.+| ..+..-.++++
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I--~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI--SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeecccc--ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 3344444444444444444444 222344444444442 2333332344444555555555444433 22223344555
Q ss_pred EEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440 113 LCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (443)
Q Consensus 113 L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 189 (443)
|+++.|.|.+ ...|..+.+|..|.|++|+++.+|.- +.++++|+.|++..|. ++....-.|..+++|+.|.+..|.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcC
Confidence 5555555544 34444555555555555555555443 3335555555555532 222211124455555555555554
Q ss_pred CCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (443)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (443)
+..-.. ..+-.+.++++|++..|.+....+.. .++.|+.|+++.+.+.... ....+.+++|+.|+++.|
T Consensus 257 I~kL~D--------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 257 ISKLDD--------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-IDSWSFTQKLKELDLSSN 327 (873)
T ss_pred cccccC--------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee-cchhhhcccceeEecccc
Confidence 433332 22334555555555555554444332 3355555555444332211 011245566666666665
Q ss_pred cccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceec
Q 013440 268 KKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL 347 (443)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 347 (443)
++.. ++..-...+..|+.|.|++|....-....+. ++.+|++|+|+.+.---.+.| ......++|+|+.|.+
T Consensus 328 ~i~~---l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~---~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 328 RITR---LDEGSFRVLSQLEELNLSHNSIDHLAEGAFV---GLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKLRL 399 (873)
T ss_pred cccc---CChhHHHHHHHhhhhcccccchHHHHhhHHH---HhhhhhhhcCcCCeEEEEEec--chhhhccchhhhheee
Confidence 4421 1222233345666666666543322222222 556666666666632111111 1112233667777777
Q ss_pred cccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeee
Q 013440 348 MFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKV 401 (443)
Q Consensus 348 ~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i 401 (443)
.+ +++++++...+ ..+++|++|++.+ +-+.++.+.++ ..+ .|++|.+
T Consensus 400 ~g-Nqlk~I~krAf---sgl~~LE~LdL~~-NaiaSIq~nAF-e~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 400 TG-NQLKSIPKRAF---SGLEALEHLDLGD-NAIASIQPNAF-EPM-ELKELVM 446 (873)
T ss_pred cC-ceeeecchhhh---ccCcccceecCCC-Ccceeeccccc-ccc-hhhhhhh
Confidence 66 46666654322 2366666676655 33444443332 223 4555443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.9e-23 Score=193.95 Aligned_cols=341 Identities=16% Similarity=0.132 Sum_probs=244.3
Q ss_pred CCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEE
Q 013440 37 KDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTL 113 (443)
Q Consensus 37 ~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L 113 (443)
...+.|++++|.+..+... .++++|+.+.+.+|.. ..+|.. .+...+|+.|++..|.|..+. +.+..++.|++|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchh--hhcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 4466789999888665533 4889999999998885 666662 234566999999999888754 567888899999
Q ss_pred EecCCCCCC--cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440 114 CLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (443)
Q Consensus 114 ~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (443)
+++.|.|+. -..+..-.++++|+|++|+++.+-. .+..+.+|..|.++. +.+..+|..+|+++++|+.|++..|.+
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccce
Confidence 999998877 2566666889999999999887654 377888899999988 566778877788899999999988877
Q ss_pred CcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcc
Q 013440 191 GWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK 268 (443)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 268 (443)
....- ..+.+++.|+.|.+..|++..+.+.+ .+.+++++++..+...... .-.+..+..|+.|+++.|.
T Consensus 234 rive~--------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 234 RIVEG--------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-EGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred eeehh--------hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh-cccccccchhhhhccchhh
Confidence 65433 66788888899999999988777766 4588888888655443321 0123577888888999887
Q ss_pred ccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecc
Q 013440 269 KVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (443)
Q Consensus 269 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (443)
+. .+....|-. +++|+.|+|++|....--+..+. .+..|++|.|+++. +..+. ......+.+|++|+++
T Consensus 305 I~-rih~d~Wsf--tqkL~~LdLs~N~i~~l~~~sf~---~L~~Le~LnLs~Ns-i~~l~----e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 305 IQ-RIHIDSWSF--TQKLKELDLSSNRITRLDEGSFR---VLSQLEELNLSHNS-IDHLA----EGAFVGLSSLHKLDLR 373 (873)
T ss_pred hh-eeecchhhh--cccceeEeccccccccCChhHHH---HHHHhhhhcccccc-hHHHH----hhHHHHhhhhhhhcCc
Confidence 73 333344432 37899999988876554444444 67889999999883 33331 1234467788888888
Q ss_pred ccccccccc-cccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCc
Q 013440 349 FLTNLETIC-YSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (443)
Q Consensus 349 ~c~~l~~~~-~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~ 405 (443)
+. ++.-.. .+..+ -..+++|++|.+.+ +++++++..+ +..++.|++|++.+-.
T Consensus 374 ~N-~ls~~IEDaa~~-f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 374 SN-ELSWCIEDAAVA-FNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDNA 427 (873)
T ss_pred CC-eEEEEEecchhh-hccchhhhheeecC-ceeeecchhh-hccCcccceecCCCCc
Confidence 74 333221 12111 23388889999987 7888886544 4678899999886654
No 6
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.87 E-value=1.6e-22 Score=208.76 Aligned_cols=361 Identities=24% Similarity=0.299 Sum_probs=237.2
Q ss_pred CchhHHHHHHHHhh-----ccceeeccCcchhhhhhhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCcc
Q 013440 1 MHDVIHVVAVSIAT-----EERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQ 75 (443)
Q Consensus 1 mhdli~~~~~~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~ 75 (443)
|||+|||||.++++ +++.+ +..+.++.+.+....+..+|++.+.++.+..++....+++|++|-+.+|......
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~ 561 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE 561 (889)
T ss_pred eeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh
Confidence 99999999999999 66644 3433345557778888999999999999999998889999999999998621477
Q ss_pred CcHHHHhcCCCCCEEEcCCCc-cccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCC-CCCCchhhcCC
Q 013440 76 VSDHFFEGMEGLKVLQFPGIG-SSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSN-INQLPVEIGQL 152 (443)
Q Consensus 76 ~~~~~~~~l~~L~~L~l~~~~-~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l 152 (443)
++..+|..++.|++||+++|. +.++|+.++.+.+||||+++++.++. |.+++++..|.+|++..+. +..+|.....|
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhc
Confidence 788889999999999999876 56799999999999999999999988 8899999999999998883 44556666678
Q ss_pred CCCCEEeccCCc-cccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCE----EEeecCCCCCCCC
Q 013440 153 TRLQLLDLSNCW-WLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTT----LEIEVPDAEILPP 227 (443)
Q Consensus 153 ~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~----L~l~~~~~~~~~~ 227 (443)
.+|++|.+.... ..+......+..+.+|+.+....... .....+..+.+|++ +.+.++.....+
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~----------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~- 710 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV----------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLI- 710 (889)
T ss_pred ccccEEEeeccccccchhhHHhhhcccchhhheeecchh----------HhHhhhhhhHHHHHHhHhhhhcccccceee-
Confidence 888888887633 11111111133344444444322111 00122223333321 111111111111
Q ss_pred ccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccccccc--c-hhhHhhcccceeeccccCCcccccccc
Q 013440 228 DFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEN--D-GTKMLLQRTEDLWLETLEGVQSVVHEL 304 (443)
Q Consensus 228 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~-~~~~~~~~L~~L~L~~~~~~~~~~~~~ 304 (443)
..+..+.+|+.|.+.++......... . ....+++++..+.+..|....+..+..
T Consensus 711 -----------------------~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~ 767 (889)
T KOG4658|consen 711 -----------------------SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL 767 (889)
T ss_pred -----------------------cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh
Confidence 12244555555555554443211100 0 011124567777777777777665533
Q ss_pred ccCCCCCCccEEEEecccCceeeccccccc-----ccCccCcccce-eccccccccccccccccccccccccceeeeccC
Q 013440 305 DDGEGFPRLKRLLVTDCSEILHIVGSVRRV-----RCEVFPLLEAL-SLMFLTNLETICYSQLREDQSFSNLRIINVDSC 378 (443)
Q Consensus 305 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~~~~~~L~~L-~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c 378 (443)
..|+|+.|.+.+|..++++.+..... ....|.++..+ .+.+.+++.++...+++ ++.|+++.+..|
T Consensus 768 ----f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~----~~~l~~~~ve~~ 839 (889)
T KOG4658|consen 768 ----FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS----FLKLEELIVEEC 839 (889)
T ss_pred ----ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC----ccchhheehhcC
Confidence 35899999999998777654332111 13456667777 57666777777655444 777999999999
Q ss_pred cCcccccChhhhhcccccceeeeccC-ccccccccC
Q 013440 379 RKLKYLFSFSMAKNLLRLQKVKVEDC-DDLKMIIGP 413 (443)
Q Consensus 379 ~~l~~~~~~~~~~~~~~L~~L~i~~C-~~l~~~~~~ 413 (443)
|++..+| .+..+.+.+| +.+...++.
T Consensus 840 p~l~~~P---------~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 840 PKLGKLP---------LLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred cccccCc---------cccccceeccccceeecCCc
Confidence 8887764 4566777786 777766655
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.9e-20 Score=202.96 Aligned_cols=378 Identities=19% Similarity=0.222 Sum_probs=271.6
Q ss_pred CchhHHHHHHHHhhccce-----eeccCcchhhh-hhhhccCCCCeEEeCCCCCCCCCC----CcCCCCCCcEEEcccCC
Q 013440 1 MHDVIHVVAVSIATEERM-----FNVPNVADLEK-KMEETIQKDPIAISLPHRDIQELP----ERLQCPNLQLFLLYTEG 70 (443)
Q Consensus 1 mhdli~~~~~~i~~~~~~-----~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~l~----~~~~~~~L~~L~l~~~~ 70 (443)
|||++|+||+++++++.. ...++..++.. ........+++.+.+.-..++++. .+.++++|+.|.+.++.
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 999999999999986521 01111111111 112223356676666655553322 13379999999997653
Q ss_pred C-----CCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCC-CCC
Q 013440 71 N-----GPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYS-NIN 143 (443)
Q Consensus 71 ~-----~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~-~~~ 143 (443)
. ....+|..+..-..+||.|.+.++.+..+|..+ ...+|++|++.++.+.. +..+..+++|+.|+++++ .++
T Consensus 570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648 (1153)
T ss_pred ccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence 1 022455554222357999999999999999887 57899999999999888 678889999999999988 566
Q ss_pred CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCC-
Q 013440 144 QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA- 222 (443)
Q Consensus 144 ~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~- 222 (443)
.+| .+..+++|+.|++.+|.....+|.. ++.+++|+.|++++|......+ ..+ ++++|+.|++++|..
T Consensus 649 ~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp--------~~i-~l~sL~~L~Lsgc~~L 717 (1153)
T PLN03210 649 EIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP--------TGI-NLKSLYRLNLSGCSRL 717 (1153)
T ss_pred cCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC--------CcC-CCCCCCEEeCCCCCCc
Confidence 776 4788999999999999988899986 7899999999999876443332 222 688999999998864
Q ss_pred CCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccc----ccccchhhHhhcccceeeccccCCcc
Q 013440 223 EILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI----LQENDGTKMLLQRTEDLWLETLEGVQ 298 (443)
Q Consensus 223 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~L~~L~L~~~~~~~ 298 (443)
..+|. ..++|+.+++........ +....+++|+.|.+..+..... .+........+++|+.|++++|....
T Consensus 718 ~~~p~--~~~nL~~L~L~~n~i~~l---P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~ 792 (1153)
T PLN03210 718 KSFPD--ISTNISWLDLDETAIEEF---PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV 792 (1153)
T ss_pred ccccc--ccCCcCeeecCCCccccc---cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc
Confidence 45554 346888888855443221 2222467777777765332110 01111112234789999999998888
Q ss_pred ccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccC
Q 013440 299 SVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSC 378 (443)
Q Consensus 299 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c 378 (443)
.++..+. .+++|+.|++.+|.+++.++ ....+++|+.|++++|..+..++. ..++|++|++.+
T Consensus 793 ~lP~si~---~L~~L~~L~Ls~C~~L~~LP------~~~~L~sL~~L~Ls~c~~L~~~p~-------~~~nL~~L~Ls~- 855 (1153)
T PLN03210 793 ELPSSIQ---NLHKLEHLEIENCINLETLP------TGINLESLESLDLSGCSRLRTFPD-------ISTNISDLNLSR- 855 (1153)
T ss_pred ccChhhh---CCCCCCEEECCCCCCcCeeC------CCCCccccCEEECCCCCccccccc-------cccccCEeECCC-
Confidence 8877665 89999999999999998876 333689999999999998877653 247899999987
Q ss_pred cCcccccChhhhhcccccceeeeccCccccccccCC
Q 013440 379 RKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPD 414 (443)
Q Consensus 379 ~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~~ 414 (443)
..++.+|. .+..+++|+.|++.+|.+++.++...
T Consensus 856 n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 856 TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred CCCccChH--HHhcCCCCCEEECCCCCCcCccCccc
Confidence 57888873 46889999999999999999987653
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=5.4e-23 Score=194.46 Aligned_cols=325 Identities=16% Similarity=0.159 Sum_probs=227.1
Q ss_pred hhccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCC
Q 013440 32 EETIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L 110 (443)
..+.+.+++||++++|++..+.+-. .++.||.+++..|..-...+|..+| .+..|.+||++.|.+.++|..+.+-+++
T Consensus 50 EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNS 128 (1255)
T ss_pred HHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCc
Confidence 4566788999999999886666544 8999999999988864566788885 7999999999999999999999999999
Q ss_pred cEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCC
Q 013440 111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG 188 (443)
Q Consensus 111 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 188 (443)
-.|++++|.|.. | ..+-++..|.+|||++|++..+|+.+..+..|++|.+++|+.. .....-+..+++|+.|.+++.
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccc
Confidence 999999999988 5 5667899999999999999999999999999999999997532 111111345667777777765
Q ss_pred CCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440 189 FSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (443)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (443)
+-+ ....+..+..+.||+.++++.|....+|... ...+|++|+++.+.+.... --.+...++++|+++.|
T Consensus 208 qRT-------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~--~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 208 QRT-------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN--MTEGEWENLETLNLSRN 278 (1255)
T ss_pred cch-------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee--ccHHHHhhhhhhccccc
Confidence 432 2234467888899999999999998888865 3477887777655443322 11234566777777776
Q ss_pred cccccccccchhhHhhcccceeeccccCCc-cccccccccCCCCCCccEEEEecccCceeecccccccccCccCccccee
Q 013440 268 KKVSILQENDGTKMLLQRTEDLWLETLEGV-QSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALS 346 (443)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 346 (443)
.+. ..|+++.++ ++|+.|...++... ..+|.. ++.+..|+++...++ +++-++ .++..+++|+.|.
T Consensus 279 QLt---~LP~avcKL-~kL~kLy~n~NkL~FeGiPSG---IGKL~~Levf~aanN-~LElVP-----EglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 279 QLT---VLPDAVCKL-TKLTKLYANNNKLTFEGIPSG---IGKLIQLEVFHAANN-KLELVP-----EGLCRCVKLQKLK 345 (1255)
T ss_pred hhc---cchHHHhhh-HHHHHHHhccCcccccCCccc---hhhhhhhHHHHhhcc-ccccCc-----hhhhhhHHHHHhc
Confidence 552 234445444 66777766655432 233443 336666666666654 343332 2455666777777
Q ss_pred ccccccccccccccccccccccccceeeeccCcCccccc
Q 013440 347 LMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLF 385 (443)
Q Consensus 347 l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 385 (443)
+.+ +++..+|.+ .+-++.|+.|++...|++..-|
T Consensus 346 L~~-NrLiTLPea----IHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 346 LDH-NRLITLPEA----IHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccc-cceeechhh----hhhcCCcceeeccCCcCccCCC
Confidence 754 455555554 3446777777777777766544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=1.3e-22 Score=191.89 Aligned_cols=342 Identities=20% Similarity=0.232 Sum_probs=174.2
Q ss_pred CCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccc--cccccccCCCCCcEE
Q 013440 37 KDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS--SLPSSLGRLINLQTL 113 (443)
Q Consensus 37 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~p~~l~~l~~L~~L 113 (443)
++++.|-+...++..+|.-. .+.+|+.|.+.+|.. ..+-..+ +.++.||.+.++.|++. ++|..+-.+..|..|
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L--~~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL--ISVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL 108 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh--Hhhhhhh-ccchhhHHHhhhccccccCCCCchhcccccceee
Confidence 34444444444444444322 444444444444442 2222221 34444444444444442 244444444445555
Q ss_pred EecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440 114 CLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (443)
Q Consensus 114 ~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (443)
++++|+++. |..+.+.+++.+|+|++|++..+|.. +.+++.|-.|++++ +..+.+|.. +.++..|++|.+++|++.
T Consensus 109 DLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 109 DLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred ecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCChhh
Confidence 555554444 44444444455555555555444443 33444444455544 333444443 344444555555444432
Q ss_pred cccccCCCchhhhhccCCCCCCEEEeecCCC--CCCCCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcc
Q 013440 192 WEKVEGGSNASLVELERLTELTTLEIEVPDA--EILPPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK 268 (443)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 268 (443)
... +..+-.++.|++|.+++..- ..+|..+ .+.+|..++++.+..+... .-+..+++|+.|++++|.
T Consensus 187 hfQ--------LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP--ecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 187 HFQ--------LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP--ECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred HHH--------HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch--HHHhhhhhhheeccCcCc
Confidence 111 01222333334444443332 2344433 3344444444333322221 123455555666666654
Q ss_pred ccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecc
Q 013440 269 KVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (443)
Q Consensus 269 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (443)
+.+.. . ..... .++++|+++++.... +|.... .+++|+.|.+.++. ++ .++.-.+++.+..|+.++..
T Consensus 257 iteL~-~--~~~~W-~~lEtLNlSrNQLt~-LP~avc---KL~kL~kLy~n~Nk-L~---FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 257 ITELN-M--TEGEW-ENLETLNLSRNQLTV-LPDAVC---KLTKLTKLYANNNK-LT---FEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred eeeee-c--cHHHH-hhhhhhccccchhcc-chHHHh---hhHHHHHHHhccCc-cc---ccCCccchhhhhhhHHHHhh
Confidence 42211 1 11111 456666666654432 333322 67778877777662 22 22233467778888888888
Q ss_pred ccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCccccccccC
Q 013440 349 FLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP 413 (443)
Q Consensus 349 ~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~ 413 (443)
+ +.++-+|.+ ...++.|+.|.+. |+.+..+| ..+.-++.|+.|+++..|++..-|..
T Consensus 325 n-N~LElVPEg----lcRC~kL~kL~L~-~NrLiTLP--eaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 325 N-NKLELVPEG----LCRCVKLQKLKLD-HNRLITLP--EAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred c-cccccCchh----hhhhHHHHHhccc-ccceeech--hhhhhcCCcceeeccCCcCccCCCCc
Confidence 7 467766765 4569999999995 67777787 55688999999999999998765544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=7.1e-22 Score=177.82 Aligned_cols=229 Identities=19% Similarity=0.242 Sum_probs=113.5
Q ss_pred hhccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCC
Q 013440 32 EETIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L 110 (443)
....+..+.++.++++....+|+.+ .+.++..++.+.|.. ..+|..+ ..+..|+.++.++|.+..+|+.++.+..|
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l--s~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l 139 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL--SELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDL 139 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchH--hhccHHH-hhhhhhhhhhccccceeecCchHHHHhhh
Confidence 3445555666666666665555544 555555666666553 5555554 45555555565555555555555555555
Q ss_pred cEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440 111 QTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (443)
Q Consensus 111 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 189 (443)
+.++..+|.+.. |+++.++.+|..+++.+++++++|+...+|+.|++++... +..+.+|.. ++.+.+|..|++..|.
T Consensus 140 ~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~-lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 140 EDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPE-LGGLESLELLYLRRNK 217 (565)
T ss_pred hhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChh-hcchhhhHHHHhhhcc
Confidence 555555555555 4555555555555555555554444433344444444444 333444433 3334444433333333
Q ss_pred CCcccc--cC-----------CCchhh-hhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEEecCCCCCCCCchhc
Q 013440 190 SGWEKV--EG-----------GSNASL-VELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIRIGDGPEDEFDPLLV 254 (443)
Q Consensus 190 ~~~~~~--~~-----------~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~ 254 (443)
+...+. +. ...-.+ +..+++.++..|++..|++.+.|..+ ...+|..++++-+.+.... ..++
T Consensus 218 i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp--~sLg 295 (565)
T KOG0472|consen 218 IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLP--YSLG 295 (565)
T ss_pred cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCC--cccc
Confidence 222211 00 000011 22345666666666666666666665 3356666666444333322 2334
Q ss_pred ccccceeEEEcCcc
Q 013440 255 KSEASRLMMLKGIK 268 (443)
Q Consensus 255 ~~~~L~~L~l~~~~ 268 (443)
++ .|+.|-+.||.
T Consensus 296 nl-hL~~L~leGNP 308 (565)
T KOG0472|consen 296 NL-HLKFLALEGNP 308 (565)
T ss_pred cc-eeeehhhcCCc
Confidence 44 44555444443
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=6.7e-18 Score=166.98 Aligned_cols=347 Identities=20% Similarity=0.164 Sum_probs=221.2
Q ss_pred CeEEeCCCCCCCCCC--CcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEec
Q 013440 39 PIAISLPHRDIQELP--ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD 116 (443)
Q Consensus 39 l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~ 116 (443)
+.+|++..|.+-..| -.-+.-+|+.|++++|.. ..+|..+ ..+.+|+.|+++.|.+..+|.+.+.+.+|+++++.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~--~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI--SSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccc--ccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence 677777777764433 222555699999999985 7778776 67999999999999999999999999999999999
Q ss_pred CCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCE--------------------------------------
Q 013440 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL-------------------------------------- 157 (443)
Q Consensus 117 ~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~-------------------------------------- 157 (443)
++.+.. |..+..+.+|++|+++.|.+..+|..+..++.+..
T Consensus 100 ~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l 179 (1081)
T KOG0618|consen 100 NNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL 179 (1081)
T ss_pred cchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh
Confidence 999888 89999999999999999988766654433332222
Q ss_pred ---EeccCCccccccchHHhhcC--------------------CCCcEEEccCCCCCcccccC-------------CCch
Q 013440 158 ---LDLSNCWWLEVIAPNVISKL--------------------SQLEELYMGNGFSGWEKVEG-------------GSNA 201 (443)
Q Consensus 158 ---L~l~~~~~~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~-------------~~~~ 201 (443)
|++..|... ... +..+ ++|+.|..+.|.+....+.. ....
T Consensus 180 ~~~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~ 255 (1081)
T KOG0618|consen 180 THQLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN 255 (1081)
T ss_pred heeeecccchhh-hhh---hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc
Confidence 223222211 000 1111 23333333333332111100 1112
Q ss_pred hhhhccCCCCCCEEEeecCCCCCCCCccc-cccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccc---
Q 013440 202 SLVELERLTELTTLEIEVPDAEILPPDFV-SVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEND--- 277 (443)
Q Consensus 202 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--- 277 (443)
.+..++.+.+|+.++...|.+..+|..+. .++|+.+.+..++..... +.++..+.|++|+++.|++.. .+...
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip--~~le~~~sL~tLdL~~N~L~~-lp~~~l~v 332 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIP--PFLEGLKSLRTLDLQSNNLPS-LPDNFLAV 332 (1081)
T ss_pred chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCC--Ccccccceeeeeeehhccccc-cchHHHhh
Confidence 23556778899999999999888887763 377877777544433222 334567888888888876532 11100
Q ss_pred --------------------hhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccC
Q 013440 278 --------------------GTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCE 337 (443)
Q Consensus 278 --------------------~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 337 (443)
.-...++.|+.|++.+|.........+. +++.||.|+|+++ .+..+++ ....
T Consensus 333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~---~~~hLKVLhLsyN-rL~~fpa----s~~~ 404 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV---NFKHLKVLHLSYN-RLNSFPA----SKLR 404 (1081)
T ss_pred hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc---cccceeeeeeccc-ccccCCH----HHHh
Confidence 0001123466667766665554433333 7889999999988 4444442 2556
Q ss_pred ccCcccceeccccccccccccc------------------cccccccccccceeeeccCcCcccccChhhhhccccccee
Q 013440 338 VFPLLEALSLMFLTNLETICYS------------------QLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKV 399 (443)
Q Consensus 338 ~~~~L~~L~l~~c~~l~~~~~~------------------~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L 399 (443)
.++.|+.|.+++ ++++.++.. .+|+....+.|+.++++ |..|+..-.....+ .+.|++|
T Consensus 405 kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p-~p~LkyL 481 (1081)
T KOG0618|consen 405 KLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALP-SPNLKYL 481 (1081)
T ss_pred chHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCC-Cccccee
Confidence 677788888877 466665421 23445567777888884 67777765433333 3788888
Q ss_pred eeccCcc
Q 013440 400 KVEDCDD 406 (443)
Q Consensus 400 ~i~~C~~ 406 (443)
+++|-.+
T Consensus 482 dlSGN~~ 488 (1081)
T KOG0618|consen 482 DLSGNTR 488 (1081)
T ss_pred eccCCcc
Confidence 8877764
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=2.3e-17 Score=148.99 Aligned_cols=109 Identities=19% Similarity=0.220 Sum_probs=81.6
Q ss_pred hhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440 32 EETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ 111 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~ 111 (443)
..+.++++..|++..|++..+|.+..|..|..+.+..|.. ..+|.+++..+.++.+||+++|.+.++|+++..+++|.
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI--EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH--HhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 4566667777777777777777777777777777777763 67777777777888888888888877887777777788
Q ss_pred EEEecCCCCCC-cccccCCCCCCEEEcCCCCCC
Q 013440 112 TLCLDWCELAD-IAAIGQLKKLEILSLAYSNIN 143 (443)
Q Consensus 112 ~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~ 143 (443)
+|++++|.++. |..++++ +|+.|.+.||.+.
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 88888877777 7777777 7777777776654
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=5.2e-17 Score=160.79 Aligned_cols=209 Identities=20% Similarity=0.201 Sum_probs=112.4
Q ss_pred CCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccC--------------CCchhhhhccCCCCCCEEEeec
Q 013440 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG--------------GSNASLVELERLTELTTLEIEV 219 (443)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~l~~l~~L~~L~l~~ 219 (443)
+|+.++++. +....+|. ++..+.+|+.+++.+|.+....... .....+..++..+.|++|++..
T Consensus 242 nl~~~dis~-n~l~~lp~-wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISH-NNLSNLPE-WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecch-hhhhcchH-HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 455555555 34455674 4778888888888777664332211 0111123345567777888888
Q ss_pred CCCCCCCCcccc---ccCcEEEEEecCC-----------------------CCCCCCchhcccccceeEEEcCccccccc
Q 013440 220 PDAEILPPDFVS---VELQRYKIRIGDG-----------------------PEDEFDPLLVKSEASRLMMLKGIKKVSIL 273 (443)
Q Consensus 220 ~~~~~~~~~~~~---~~L~~l~l~~~~~-----------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 273 (443)
|.+..+|...+. ..|..++....+. .++...+.+...++|+.|+++.|.+. .
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~- 397 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S- 397 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c-
Confidence 877777765422 1233333221111 11112244455566666666654431 1
Q ss_pred cccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccc
Q 013440 274 QENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL 353 (443)
Q Consensus 274 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 353 (443)
+++.....++.|+.|+|++|.... ++.... .++.|+.|...++ .+...| ....+|.|+.+|++ |+++
T Consensus 398 -fpas~~~kle~LeeL~LSGNkL~~-Lp~tva---~~~~L~tL~ahsN-~l~~fP------e~~~l~qL~~lDlS-~N~L 464 (1081)
T KOG0618|consen 398 -FPASKLRKLEELEELNLSGNKLTT-LPDTVA---NLGRLHTLRAHSN-QLLSFP------ELAQLPQLKVLDLS-CNNL 464 (1081)
T ss_pred -CCHHHHhchHHhHHHhcccchhhh-hhHHHH---hhhhhHHHhhcCC-ceeech------hhhhcCcceEEecc-cchh
Confidence 233222233556666666654322 222222 4556666665555 232322 56678899999997 4788
Q ss_pred cccccccccccccccccceeeeccCcCcc
Q 013440 354 ETICYSQLREDQSFSNLRIINVDSCRKLK 382 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~L~~L~i~~c~~l~ 382 (443)
+.+..... .--|+|++|++.|..++.
T Consensus 465 ~~~~l~~~---~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 465 SEVTLPEA---LPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred hhhhhhhh---CCCcccceeeccCCcccc
Confidence 87754311 112899999999987643
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.2e-17 Score=132.34 Aligned_cols=165 Identities=27% Similarity=0.384 Sum_probs=108.8
Q ss_pred CCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccC
Q 013440 50 QELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQ 128 (443)
Q Consensus 50 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~ 128 (443)
.+++...++.+++.|.+++|.. ..+|+.+ ..+.+|++|++.+|.++++|.+++.+++|+.|+++-+.+.. |.+++.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl--~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKL--TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhcccCce--eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 4445555666666677777664 4555554 56777777777777777777777777777777777666655 667777
Q ss_pred CCCCCEEEcCCCCCC--CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhc
Q 013440 129 LKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL 206 (443)
Q Consensus 129 l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 206 (443)
++.|+.||+.+|.+. .+|..+..|..|+.|+++. +..+.+|.+ ++++++|+.|.+..|..... +.++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll~l---------pkei 169 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLLSL---------PKEI 169 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchhhC---------cHHH
Confidence 777777777777665 4666666777777777766 344556665 56777777777666654332 2666
Q ss_pred cCCCCCCEEEeecCCCCCCCCc
Q 013440 207 ERLTELTTLEIEVPDAEILPPD 228 (443)
Q Consensus 207 ~~l~~L~~L~l~~~~~~~~~~~ 228 (443)
+.+..|+.|.+.+|....+|.+
T Consensus 170 g~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHHHHhcccceeeecChh
Confidence 7777777777777777666654
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=7.7e-17 Score=129.26 Aligned_cols=164 Identities=21% Similarity=0.282 Sum_probs=146.6
Q ss_pred hhhhhhhccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccccc
Q 013440 27 LEKKMEETIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLG 105 (443)
Q Consensus 27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~ 105 (443)
+++.+..-..+.+++|-+++|++..+|+.+ .+.+|+.|++++|.. ..+|.++ +.++.||.|+++.|.+..+|.+|+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~i-ssl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSI-SSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhh-hhchhhhheecchhhhhcCccccC
Confidence 455566677788999999999999998877 999999999999995 8899887 899999999999999999999999
Q ss_pred CCCCCcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcE
Q 013440 106 RLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEE 182 (443)
Q Consensus 106 ~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 182 (443)
.++.|+.|++.++.+.. |..+-.+..|+.|.+++|.+..+|..++++++||.|.+..| ..-.+|.. ++.+..|++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lre 177 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRE 177 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHH
Confidence 99999999999999877 67888899999999999999999999999999999999994 45568887 799999999
Q ss_pred EEccCCCCCcccc
Q 013440 183 LYMGNGFSGWEKV 195 (443)
Q Consensus 183 L~l~~~~~~~~~~ 195 (443)
|.+.+|.....++
T Consensus 178 lhiqgnrl~vlpp 190 (264)
T KOG0617|consen 178 LHIQGNRLTVLPP 190 (264)
T ss_pred HhcccceeeecCh
Confidence 9999998765543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=7.5e-14 Score=141.97 Aligned_cols=256 Identities=20% Similarity=0.128 Sum_probs=139.4
Q ss_pred CCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCc
Q 013440 85 EGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW 164 (443)
Q Consensus 85 ~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 164 (443)
..-..|+++.+.++.+|+.+. .+|+.|++.+|.++.++. ..++|++|++++|.++.+|.. .++|+.|++.+|.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 345567777777777766554 367777777776665221 246677777777777666542 3466677776643
Q ss_pred cccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCC
Q 013440 165 WLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDG 244 (443)
Q Consensus 165 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~ 244 (443)
+..+|. -..+|+.|++++|.+...+. ..++|+.|++++|.+..+|. ....|+.|.+..+..
T Consensus 274 -L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~------------~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 274 -LTHLPA----LPSGLCKLWIFGNQLTSLPV------------LPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQL 334 (788)
T ss_pred -hhhhhh----chhhcCEEECcCCccccccc------------cccccceeECCCCccccCCC--CcccccccccccCcc
Confidence 333432 12456667776665543221 23467777777776666554 223455555533332
Q ss_pred CCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCc
Q 013440 245 PEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEI 324 (443)
Q Consensus 245 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 324 (443)
.... ....+|+.|++++|.+.. ++ . ..++|+.|++.+|... .++. ...+|+.|+++++ .+
T Consensus 335 ~~LP-----~lp~~Lq~LdLS~N~Ls~-LP--~----lp~~L~~L~Ls~N~L~-~LP~------l~~~L~~LdLs~N-~L 394 (788)
T PRK15387 335 TSLP-----TLPSGLQELSVSDNQLAS-LP--T----LPSELYKLWAYNNRLT-SLPA------LPSGLKELIVSGN-RL 394 (788)
T ss_pred cccc-----ccccccceEecCCCccCC-CC--C----CCcccceehhhccccc-cCcc------cccccceEEecCC-cc
Confidence 2211 122466777777765532 21 1 1145666666655432 2322 2245777777766 34
Q ss_pred eeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccC
Q 013440 325 LHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC 404 (443)
Q Consensus 325 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C 404 (443)
+.++ ...+.|+.|+++++ .++.++.. ..+|+.|++++ +.++.+|. .+.+++.|+.|++.++
T Consensus 395 t~LP--------~l~s~L~~LdLS~N-~LssIP~l-------~~~L~~L~Ls~-NqLt~LP~--sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 395 TSLP--------VLPSELKELMVSGN-RLTSLPML-------PSGLLSLSVYR-NQLTRLPE--SLIHLSSETTVNLEGN 455 (788)
T ss_pred cCCC--------CcccCCCEEEccCC-cCCCCCcc-------hhhhhhhhhcc-CcccccCh--HHhhccCCCeEECCCC
Confidence 3332 12356777777764 45544421 34566667665 45666652 2455667777777666
Q ss_pred c
Q 013440 405 D 405 (443)
Q Consensus 405 ~ 405 (443)
+
T Consensus 456 ~ 456 (788)
T PRK15387 456 P 456 (788)
T ss_pred C
Confidence 4
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=2e-13 Score=138.89 Aligned_cols=255 Identities=16% Similarity=0.096 Sum_probs=157.9
Q ss_pred CCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEec
Q 013440 37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD 116 (443)
Q Consensus 37 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~ 116 (443)
.+-..|+++++.+..+|.... ++|+.|++.+|.+ ..+|. ..++|++|++++|.++.+|.. .++|++|+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~L--t~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcC--CCCCC----CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 445577788777777776442 4678888887775 44553 257788888888887777643 3577788888
Q ss_pred CCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccccc
Q 013440 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVE 196 (443)
Q Consensus 117 ~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 196 (443)
+|.+..++. -..+|+.|++++|+++.+|.. .++|+.|++++|.+ ..+|.. ..+|+.|++++|.+...+.
T Consensus 271 ~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l----p~~L~~L~Ls~N~L~~LP~- 339 (788)
T PRK15387 271 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL----PSELCKLWAYNNQLTSLPT- 339 (788)
T ss_pred CCchhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC----cccccccccccCccccccc-
Confidence 877766221 124577778888877777652 46778888877543 344431 2346677777776643221
Q ss_pred CCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccccccc
Q 013440 197 GGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEN 276 (443)
Q Consensus 197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 276 (443)
...+|+.|++++|.+..+|. ...+|+.|.+..+...... ....+|+.|++++|.+.. ++.
T Consensus 340 -----------lp~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~Ls~N~L~~LP-----~l~~~L~~LdLs~N~Lt~-LP~- 399 (788)
T PRK15387 340 -----------LPSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTSLP-----ALPSGLKELIVSGNRLTS-LPV- 399 (788)
T ss_pred -----------cccccceEecCCCccCCCCC--CCcccceehhhccccccCc-----ccccccceEEecCCcccC-CCC-
Confidence 11367788888887777765 2356666666443332211 123467788888876642 221
Q ss_pred chhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccc
Q 013440 277 DGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL 350 (443)
Q Consensus 277 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 350 (443)
..++|+.|++++|... .++. ...+|+.|+++++ .++.++. ....++.|+.|+++++
T Consensus 400 -----l~s~L~~LdLS~N~Ls-sIP~------l~~~L~~L~Ls~N-qLt~LP~-----sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 400 -----LPSELKELMVSGNRLT-SLPM------LPSGLLSLSVYRN-QLTRLPE-----SLIHLSSETTVNLEGN 455 (788)
T ss_pred -----cccCCCEEEccCCcCC-CCCc------chhhhhhhhhccC-cccccCh-----HHhhccCCCeEECCCC
Confidence 1257888888877543 3333 2346777888776 4555541 3456778888888775
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=5.5e-13 Score=136.42 Aligned_cols=250 Identities=14% Similarity=0.123 Sum_probs=172.1
Q ss_pred ccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEE
Q 013440 34 TIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L 113 (443)
+...+...|++.+.++..+|..+ .+.|+.|++++|.+ ..+|..++ .+|++|++++|.++.+|..+. .+|+.|
T Consensus 175 Cl~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L--tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L 246 (754)
T PRK15370 175 CLKNNKTELRLKILGLTTIPACI-PEQITTLILDNNEL--KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEM 246 (754)
T ss_pred hcccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC--CcCChhhc---cCCCEEECCCCccccCChhhh--ccccEE
Confidence 34456788999988888887644 35789999999985 67777653 589999999999988887653 479999
Q ss_pred EecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440 114 CLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (443)
Q Consensus 114 ~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (443)
++++|.+.. |..+. .+|+.|++++|.++.+|..+. ++|+.|++++|.+ ..+|.. + .++|+.|++++|.+..
T Consensus 247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~-l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 247 ELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI-RTLPAH-L--PSGITHLNVQSNSLTA 318 (754)
T ss_pred ECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc-ccCccc-c--hhhHHHHHhcCCcccc
Confidence 999998877 44433 579999999999888887654 5899999998654 456643 2 2468888888887754
Q ss_pred ccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccc
Q 013440 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI 272 (443)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 272 (443)
.+. . ..++|+.|++.+|.+..+|..+ .++|+.|++..+...... . ...+.|+.|++++|.+..
T Consensus 319 LP~---------~--l~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~~LP--~--~lp~~L~~LdLs~N~Lt~- 381 (754)
T PRK15370 319 LPE---------T--LPPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQITVLP--E--TLPPTITTLDVSRNALTN- 381 (754)
T ss_pred CCc---------c--ccccceeccccCCccccCChhh-cCcccEEECCCCCCCcCC--h--hhcCCcCEEECCCCcCCC-
Confidence 321 1 1257889999999888887653 468888888655443221 1 123678888888876642
Q ss_pred ccccchhhHhhcccceeeccccCCccccccccc-cCCCCCCccEEEEeccc
Q 013440 273 LQENDGTKMLLQRTEDLWLETLEGVQSVVHELD-DGEGFPRLKRLLVTDCS 322 (443)
Q Consensus 273 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 322 (443)
+ +..+. ..|+.|++++|... .++..+. ....++++..|++.+++
T Consensus 382 L--P~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 382 L--PENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred C--CHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 2 22222 46888888876543 3332211 01245778888888774
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=6.8e-13 Score=135.76 Aligned_cols=228 Identities=15% Similarity=0.169 Sum_probs=168.8
Q ss_pred cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEE
Q 013440 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~ 114 (443)
.++.++.|++.+|.+..+|... .++|+.|++++|.+ ..+|..+ ...|+.|++++|.+..+|..+. .+|++|+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L--tsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL--TSIPATL---PDTIQEMELSINRITELPERLP--SALQSLD 268 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc--ccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEE
Confidence 4678999999999999888755 36899999999986 6777765 3579999999999999987764 5899999
Q ss_pred ecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcc
Q 013440 115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (443)
Q Consensus 115 l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (443)
+++|.+.. |..+. .+|+.|++++|.++.+|..+. ++|+.|++++|.+ ..+|.. -.++|+.|++++|.+...
T Consensus 269 Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~L-t~LP~~---l~~sL~~L~Ls~N~Lt~L 340 (754)
T PRK15370 269 LFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSL-TALPET---LPPGLKTLEAGENALTSL 340 (754)
T ss_pred CcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcc-ccCCcc---ccccceeccccCCccccC
Confidence 99999887 44332 589999999999998886553 4788999998654 456643 236899999999877543
Q ss_pred cccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccc
Q 013440 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL 273 (443)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 273 (443)
+ ..+ .++|+.|++++|.+..+|..+ .+.|+.|++..+...... . .....|+.|++++|.+. .+
T Consensus 341 P---------~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP--~--~l~~sL~~LdLs~N~L~-~L 403 (754)
T PRK15370 341 P---------ASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLP--E--NLPAALQIMQASRNNLV-RL 403 (754)
T ss_pred C---------hhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCC--H--hHHHHHHHHhhccCCcc-cC
Confidence 3 222 368999999999998888653 478999998765544322 1 12246888899998774 22
Q ss_pred cccchhhHh---hcccceeeccccCCc
Q 013440 274 QENDGTKML---LQRTEDLWLETLEGV 297 (443)
Q Consensus 274 ~~~~~~~~~---~~~L~~L~L~~~~~~ 297 (443)
+..+..+ .+++..+++.+|+..
T Consensus 404 --P~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 404 --PESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --chhHHHHhhcCCCccEEEeeCCCcc
Confidence 2222222 367788999887754
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=4.3e-13 Score=126.49 Aligned_cols=83 Identities=25% Similarity=0.240 Sum_probs=35.8
Q ss_pred hcCCCCCEEEcCCCcccc-ccccccCCC---CCcEEEecCCCCCC------cccccCC-CCCCEEEcCCCCCC-----CC
Q 013440 82 EGMEGLKVLQFPGIGSSS-LPSSLGRLI---NLQTLCLDWCELAD------IAAIGQL-KKLEILSLAYSNIN-----QL 145 (443)
Q Consensus 82 ~~l~~L~~L~l~~~~~~~-~p~~l~~l~---~L~~L~l~~~~l~~------~~~~~~l-~~L~~L~l~~~~~~-----~l 145 (443)
..+.+|+.|++++|.+.. .+..+..+. +|++|++++|.+.+ ...+..+ ++|+.|++++|.++ .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 345555555555555432 222222222 25555555555442 1223333 45555555555444 12
Q ss_pred chhhcCCCCCCEEeccCCc
Q 013440 146 PVEIGQLTRLQLLDLSNCW 164 (443)
Q Consensus 146 p~~~~~l~~L~~L~l~~~~ 164 (443)
+..+..+++|++|++++|.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 158 AKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHhCCCcCEEECcCCC
Confidence 2233344445555554443
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.33 E-value=1.7e-12 Score=135.01 Aligned_cols=315 Identities=18% Similarity=0.192 Sum_probs=182.9
Q ss_pred hhhhhccCCCCeEEeCCCCC--CCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccc
Q 013440 29 KKMEETIQKDPIAISLPHRD--IQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL 104 (443)
Q Consensus 29 ~~~~~~~~~~l~~L~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l 104 (443)
........+++++|-+..+. +..++. +..++.|++|++++|.. ...+|..+ +++-+||+|+++++.+..+|..+
T Consensus 537 ~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l 614 (889)
T KOG4658|consen 537 HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSI-GELVHLRYLDLSDTGISHLPSGL 614 (889)
T ss_pred hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHH-hhhhhhhcccccCCCccccchHH
Confidence 33444555689999999886 666666 44899999999999887 78899987 89999999999999999999999
Q ss_pred cCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCC---CCchhhcCCCCCCEEeccCCccccccchHHhhcCCC
Q 013440 105 GRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN---QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179 (443)
Q Consensus 105 ~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 179 (443)
++++.|.+|++..+.-.. + .....+.+|++|.+...... .....+.++.+|+.+....... .+... +..+..
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~-l~~~~~ 691 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLED-LLGMTR 691 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhh-hhhhHH
Confidence 999999999999987433 4 55556999999999876533 1223345666666666543221 11111 223333
Q ss_pred CcE----EEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcc
Q 013440 180 LEE----LYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVK 255 (443)
Q Consensus 180 L~~----L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 255 (443)
|+. +.+..+. .......+..+.+|+.|.+..+.+.++.... ......+. .
T Consensus 692 L~~~~~~l~~~~~~---------~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~-~~~~~~~~----------------~ 745 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCS---------KRTLISSLGSLGNLEELSILDCGISEIVIEW-EESLIVLL----------------C 745 (889)
T ss_pred HHHHhHhhhhcccc---------cceeecccccccCcceEEEEcCCCchhhccc-ccccchhh----------------h
Confidence 332 2221111 1123366788999999999988875433221 00000000 0
Q ss_pred cccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccc
Q 013440 256 SEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVR 335 (443)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 335 (443)
++++..+.+..+.. ...+.|.. ..++|+.|.+..|....++..... .+..++.+.+..+ .+... .....
T Consensus 746 f~~l~~~~~~~~~~---~r~l~~~~-f~~~L~~l~l~~~~~~e~~i~~~k---~~~~l~~~i~~f~-~~~~l---~~~~~ 814 (889)
T KOG4658|consen 746 FPNLSKVSILNCHM---LRDLTWLL-FAPHLTSLSLVSCRLLEDIIPKLK---ALLELKELILPFN-KLEGL---RMLCS 814 (889)
T ss_pred HHHHHHHHhhcccc---ccccchhh-ccCcccEEEEecccccccCCCHHH---HhhhcccEEeccc-ccccc---eeeec
Confidence 11222221222111 11111111 116666666666666555433222 2333332222211 11100 01123
Q ss_pred cCccCcccceeccccccccccccccccccccccccceeeeccC-cCcccccC
Q 013440 336 CEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSC-RKLKYLFS 386 (443)
Q Consensus 336 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c-~~l~~~~~ 386 (443)
.+.||++..+.+... .++++.....++.+.+|.+.++.+.+| +.+...|.
T Consensus 815 l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 815 LGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred CCCCceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCC
Confidence 444555555555442 255554444455677899999999997 77777653
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.31 E-value=8.3e-13 Score=124.56 Aligned_cols=11 Identities=18% Similarity=-0.025 Sum_probs=6.3
Q ss_pred CCccEEEEecc
Q 013440 311 PRLKRLLVTDC 321 (443)
Q Consensus 311 ~~L~~L~l~~~ 321 (443)
+.|++|++.+|
T Consensus 250 ~~L~~L~l~~n 260 (319)
T cd00116 250 ISLLTLSLSCN 260 (319)
T ss_pred CCceEEEccCC
Confidence 45566666555
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=8.3e-14 Score=126.01 Aligned_cols=284 Identities=18% Similarity=0.191 Sum_probs=171.9
Q ss_pred CCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-ccccccCCCCCcEEEecC-CCCCC-c-
Q 013440 48 DIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQTLCLDW-CELAD-I- 123 (443)
Q Consensus 48 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p~~l~~l~~L~~L~l~~-~~l~~-~- 123 (443)
++.++|... .+....+.+..|.+ ..+|+..|+.+++||+||++.|.|+. -|..|.+++.|..|-+.+ |+|.+ +
T Consensus 57 GL~eVP~~L-P~~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 57 GLTEVPANL-PPETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcccCcccC-CCcceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 344444322 23456778888884 88888888999999999999999987 467888888887777666 77888 4
Q ss_pred ccccCCCCCCEEEcCCCCCC-CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC------Cccccc
Q 013440 124 AAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS------GWEKVE 196 (443)
Q Consensus 124 ~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------~~~~~~ 196 (443)
..|+++..|+.|.+.-|++. ..+..+..+++|..|.++. +....++...+..+.+++.+.+..|.. .|....
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 67788888888888888887 4445688888888888888 455666665577788888887766542 111110
Q ss_pred CCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEE--EEEecCCCCCCC-CchhcccccceeEEEcCccccccc
Q 013440 197 GGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRY--KIRIGDGPEDEF-DPLLVKSEASRLMMLKGIKKVSIL 273 (443)
Q Consensus 197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l--~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~ 273 (443)
......+++...-.....+.+..+..++...+...++.+ .......++... ..-+..+++|+.+++++|.+...
T Consensus 213 --~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i- 289 (498)
T KOG4237|consen 213 --LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI- 289 (498)
T ss_pred --HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh-
Confidence 000012223333333333333333333333222223332 111111122111 12256788899999998877432
Q ss_pred cccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecc
Q 013440 274 QENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (443)
Q Consensus 274 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (443)
. ..++... ..++.|.|..+..-..-..++. ++..|+.|+|+++ +++.+. +......-.|.+|.+.
T Consensus 290 ~-~~aFe~~-a~l~eL~L~~N~l~~v~~~~f~---~ls~L~tL~L~~N-~it~~~----~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 290 E-DGAFEGA-AELQELYLTRNKLEFVSSGMFQ---GLSGLKTLSLYDN-QITTVA----PGAFQTLFSLSTLNLL 354 (498)
T ss_pred h-hhhhcch-hhhhhhhcCcchHHHHHHHhhh---ccccceeeeecCC-eeEEEe----cccccccceeeeeehc
Confidence 2 3455554 7888888887765443333343 7888999999988 444432 1122333445555443
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=8.4e-13 Score=119.59 Aligned_cols=250 Identities=16% Similarity=0.150 Sum_probs=165.6
Q ss_pred ccCCCCeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCC-Cccccccc-cccCCCC
Q 013440 34 TIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGSSSLPS-SLGRLIN 109 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~p~-~l~~l~~ 109 (443)
..+.....+.+..|+++.+|+.. .+++||.|+++.|.+ ..+.+..|.++..|..|.+.+ |.|+.+|+ .|+++..
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 35677788999999999999766 899999999999986 555555679999998888777 88998884 4788999
Q ss_pred CcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccc--cch---------HHhh
Q 013440 110 LQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEV--IAP---------NVIS 175 (443)
Q Consensus 110 L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~---------~~l~ 175 (443)
|+-|.+..|.+.- ...+..+++|..|.+.+|.+..++. .+..+.+++++.+..|.+..+ +|. ..++
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 9989888888765 4778889999999999988887766 477788888887766553222 000 0011
Q ss_pred cCCCCcEEEc-------------------------cCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-
Q 013440 176 KLSQLEELYM-------------------------GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF- 229 (443)
Q Consensus 176 ~l~~L~~L~l-------------------------~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~- 229 (443)
...-..-..+ +.+...... -...++++++|++|++++|+++.+.+..
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c-------P~~cf~~L~~L~~lnlsnN~i~~i~~~aF 294 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSIC-------PAKCFKKLPNLRKLNLSNNKITRIEDGAF 294 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcC-------hHHHHhhcccceEeccCCCccchhhhhhh
Confidence 1100000000 011111111 1145788899999999999887776654
Q ss_pred -ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCC
Q 013440 230 -VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (443)
Q Consensus 230 -~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 296 (443)
....++.+.+..+...... ...+..+..|+.|.+++|++..-. +..+... ..|.+|.+-.++.
T Consensus 295 e~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~--~~aF~~~-~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVA--PGAFQTL-FSLSTLNLLSNPF 358 (498)
T ss_pred cchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEe--ccccccc-ceeeeeehccCcc
Confidence 3366777776433322111 122467788888999998774432 2223333 5688888877654
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.19 E-value=9.4e-13 Score=120.17 Aligned_cols=308 Identities=17% Similarity=0.065 Sum_probs=148.7
Q ss_pred CCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcc-cc--ccccccCCCCCcEEEecCCC-CCC--cc-cccCCCC
Q 013440 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SS--LPSSLGRLINLQTLCLDWCE-LAD--IA-AIGQLKK 131 (443)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~--~p~~l~~l~~L~~L~l~~~~-l~~--~~-~~~~l~~ 131 (443)
-.|+.|.++|+.-........+...++++..|++.+|.. +. +-+.-..|++|+++++..|. +++ .. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 355666666655422222333345566666666666652 21 22222456667777766655 444 23 3345677
Q ss_pred CCEEEcCCC-CCC--CCchhhcCCCCCCEEeccCCccccccc-hHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc
Q 013440 132 LEILSLAYS-NIN--QLPVEIGQLTRLQLLDLSNCWWLEVIA-PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE 207 (443)
Q Consensus 132 L~~L~l~~~-~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 207 (443)
|++++++.| .++ .+..-...++.+..+...||.....-. ..+-..+..+.++++..|...... .....-.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~------~~~~i~~ 291 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE------DLWLIAC 291 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch------HHHHHhh
Confidence 777777766 444 233334455556666666653222111 111233444555665555322111 1111223
Q ss_pred CCCCCCEEEeecCCC-CCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhccc
Q 013440 208 RLTELTTLEIEVPDA-EILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRT 286 (443)
Q Consensus 208 ~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 286 (443)
++..|++|+.+++.. +..+.+ .....+.+|+.+.+++|.......+. .++...+.|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~----------------------aLg~~~~~L~~l~l~~c~~fsd~~ft-~l~rn~~~L 348 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLW----------------------ALGQHCHNLQVLELSGCQQFSDRGFT-MLGRNCPHL 348 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHH----------------------HHhcCCCceEEEeccccchhhhhhhh-hhhcCChhh
Confidence 344555555543322 111110 11134566666666665443333321 233344667
Q ss_pred ceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccccc
Q 013440 287 EDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQS 366 (443)
Q Consensus 287 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 366 (443)
+.+++..+....+...... ...|+.|++|.++.|..+++-.-............|+.+.+.+|+.+++-.... ...
T Consensus 349 e~l~~e~~~~~~d~tL~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~---l~~ 424 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH---LSI 424 (483)
T ss_pred hhhcccccceehhhhHhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH---Hhh
Confidence 7777776665544322222 446777777777777655532100000122344556666666666555443221 334
Q ss_pred ccccceeeeccCcCcccccChhhhhccccccee
Q 013440 367 FSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKV 399 (443)
Q Consensus 367 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L 399 (443)
+++|+.+++.+|..++.-+...+.+++|+++..
T Consensus 425 c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred CcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 566666666666666666555555555555443
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=3e-11 Score=101.26 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=25.0
Q ss_pred hhccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccc-cCCCC
Q 013440 32 EETIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLIN 109 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l-~~l~~ 109 (443)
+..++.+++.|++.++.+..+.... .+.+|+.|++++|.. ..+.. +..++.|+.|++++|.++.+++.+ ..+++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I--~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI--TKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccccccccchhhhhcCCCEEECCCCCC--ccccC--ccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 3344445566666666665554443 355555566655553 33332 345555555555555555554333 23555
Q ss_pred CcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCC
Q 013440 110 LQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNIN 143 (443)
Q Consensus 110 L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~ 143 (443)
|++|++++|.+.+ +..+..+++|++|++.+|.++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5555555555444 233444444444444444433
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.16 E-value=9.5e-13 Score=120.13 Aligned_cols=290 Identities=16% Similarity=0.153 Sum_probs=189.8
Q ss_pred CCcEEEecCCCCCC---c-ccccCCCCCCEEEcCCC-CCC--CCchhhcCCCCCCEEeccCCccccccc-hHHhhcCCCC
Q 013440 109 NLQTLCLDWCELAD---I-AAIGQLKKLEILSLAYS-NIN--QLPVEIGQLTRLQLLDLSNCWWLEVIA-PNVISKLSQL 180 (443)
Q Consensus 109 ~L~~L~l~~~~l~~---~-~~~~~l~~L~~L~l~~~-~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L 180 (443)
.|+.|.+++|.-.. . ....+++++++|.+.+| +++ .+-..-..+++|+++++..|...++.. ......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57888888877322 2 34456888888888888 565 233334568888888888876655544 2345668889
Q ss_pred cEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc----ccccCcEEEEEecCC-CCCCCCchhcc
Q 013440 181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF----VSVELQRYKIRIGDG-PEDEFDPLLVK 255 (443)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~l~l~~~~~-~~~~~~~~~~~ 255 (443)
.++++++|..... +..-.-..++++++.+.+.++.-..+-... .+..+.++++..+.. .+......-..
T Consensus 219 ~~lNlSwc~qi~~------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 219 KYLNLSWCPQISG------NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HHhhhccCchhhc------CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 9999888754322 112233455666666655554432211110 223344444322221 11111111135
Q ss_pred cccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccc
Q 013440 256 SEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVR 335 (443)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 335 (443)
+..|+.++.+++....... .+.+++-.++|+.+-+++|....+...... ...++.|+.+++..|..+. +......
T Consensus 293 c~~lq~l~~s~~t~~~d~~-l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~Le~l~~e~~~~~~---d~tL~sl 367 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEV-LWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPHLERLDLEECGLIT---DGTLASL 367 (483)
T ss_pred hhHhhhhcccCCCCCchHH-HHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChhhhhhcccccceeh---hhhHhhh
Confidence 7788888888865533322 334555558999999999998888777766 7789999999999997554 3333445
Q ss_pred cCccCcccceeccccccccccccccccc-cccccccceeeeccCcCcccccChhhhhcccccceeeeccCcccccc
Q 013440 336 CEVFPLLEALSLMFLTNLETICYSQLRE-DQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMI 410 (443)
Q Consensus 336 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~-~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~ 410 (443)
...+|.|+.|.+++|..+++-+...+.. ..++..|+.+++.+||.+++.. ......++.|+.+++.+|..+.+-
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~-Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT-LEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-HHHHhhCcccceeeeechhhhhhh
Confidence 5688999999999998887763322220 2567889999999999999873 466789999999999999887643
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=8.3e-11 Score=98.56 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=20.8
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCc-ccc-cCCCCCCE
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAI-GQLKKLEI 134 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~-~~~-~~l~~L~~ 134 (443)
++.+++.|++.+|.+ ..+. .+...+.+|+.|++++|.++.+. .+..+++|++|++++|.++++ ..+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~I--~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQI--STIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc--cccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 444455555555543 2221 11113444555555555544442 234444455555555544442 222 23444555
Q ss_pred EEcCCCCCCCCc--hhhcCCCCCCEEeccCCc
Q 013440 135 LSLAYSNINQLP--VEIGQLTRLQLLDLSNCW 164 (443)
Q Consensus 135 L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~ 164 (443)
|++++|++..+. ..+..+++|+.|++.+|+
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 555444443221 223344444444444443
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=2.5e-11 Score=115.11 Aligned_cols=182 Identities=24% Similarity=0.341 Sum_probs=153.8
Q ss_pred ccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcE
Q 013440 34 TIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT 112 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~ 112 (443)
..+......+++.|.+.++|... .+-.|..+.++.|.+ ..+|..+ .++..|.+|+++.|.+..+|..+..|+ |+.
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~--r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI--RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKV 147 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccc--eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-cee
Confidence 45566667888888888888766 778888999988885 7788876 689999999999999999998887776 999
Q ss_pred EEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440 113 LCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (443)
Q Consensus 113 L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (443)
|.+++|++.. +..++.+..|..||.+.|.+..+|..++.+.+|+.|.+..| ....+|.. +..++ |..|+++.|.+.
T Consensus 148 li~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~Lp-Li~lDfScNkis 224 (722)
T KOG0532|consen 148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSLP-LIRLDFSCNKIS 224 (722)
T ss_pred EEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCCc-eeeeecccCcee
Confidence 9999999988 88889999999999999999999999999999999999994 55667766 55554 999999999876
Q ss_pred cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcccc
Q 013440 192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS 231 (443)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 231 (443)
..+ .++.+|+.|++|.|.+|....-|..++.
T Consensus 225 ~iP---------v~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 225 YLP---------VDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred ecc---------hhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 543 7789999999999999999887777644
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2e-10 Score=105.80 Aligned_cols=201 Identities=14% Similarity=0.055 Sum_probs=103.2
Q ss_pred CCCCCcEEEcccCCCCCccCcH-HHHhcCCCCCEEEcCCCcccc---ccccccCCCCCcEEEecCCCCCCc---ccccCC
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSS---LPSSLGRLINLQTLCLDWCELADI---AAIGQL 129 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~---~p~~l~~l~~L~~L~l~~~~l~~~---~~~~~l 129 (443)
++.+|+...+.++.. ...+. .....|++++.||++.|-+.. +.....++++|+.|+++.|.+..+ ..-..+
T Consensus 119 n~kkL~~IsLdn~~V--~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV--EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccc--cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 556666666666553 22221 233556666666666665543 334445666666666666665441 112245
Q ss_pred CCCCEEEcCCCCCC--CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc
Q 013440 130 KKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE 207 (443)
Q Consensus 130 ~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 207 (443)
.+|+.|.++.|.++ .+......+|+|..|++..|.....-... ..-++.|++|++++|.+...... ...+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~-------~~~~ 268 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQG-------YKVG 268 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccccc-------cccc
Confidence 66666666666665 34344456666666666665311111111 23345566666666655444321 3455
Q ss_pred CCCCCCEEEeecCCCCCC--CCc------cccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440 208 RLTELTTLEIEVPDAEIL--PPD------FVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (443)
Q Consensus 208 ~l~~L~~L~l~~~~~~~~--~~~------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (443)
.++.|+.|+++.+.+..+ |+. ..+++|+.|.+..+.+.+|.....+..+++|+.|.+..|
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 666666666666655332 111 123555555555444444443333444444444444443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=2.2e-10 Score=100.60 Aligned_cols=184 Identities=14% Similarity=0.089 Sum_probs=135.7
Q ss_pred ccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCC----------------------ccCcHHHHhcCCCCCEE
Q 013440 34 TIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGP----------------------MQVSDHFFEGMEGLKVL 90 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~----------------------~~~~~~~~~~l~~L~~L 90 (443)
..+.++..+.++.+.-+.+.+.. .-|.|+++.+......+ +.+-.. ...+..|..+
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~-~dTWq~Ltel 289 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVS-ADTWQELTEL 289 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEe-cchHhhhhhc
Confidence 34456666666666554444433 44566666665432100 001111 2346789999
Q ss_pred EcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccc
Q 013440 91 QFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIA 170 (443)
Q Consensus 91 ~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~ 170 (443)
|+++|.|+.+.+++.-.+.++.|+++.|.+..+..+..+++|++||+++|.++.+-.+-.++-+.+.|.+++ +.+.++.
T Consensus 290 DLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LS 368 (490)
T KOG1259|consen 290 DLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIETLS 368 (490)
T ss_pred cccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhhhh
Confidence 999999999988899999999999999998887778899999999999998887765556777888999998 4455554
Q ss_pred hHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCc
Q 013440 171 PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (443)
Q Consensus 171 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (443)
. ++++-+|..|++.+|++..... ...+++++-|+.+.+.+|++..++..
T Consensus 369 G--L~KLYSLvnLDl~~N~Ie~lde-------V~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 369 G--LRKLYSLVNLDLSSNQIEELDE-------VNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred h--hHhhhhheeccccccchhhHHH-------hcccccccHHHHHhhcCCCccccchH
Confidence 3 7888899999999998765442 26789999999999999998877764
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.6e-11 Score=103.69 Aligned_cols=190 Identities=18% Similarity=0.078 Sum_probs=126.2
Q ss_pred CCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCC-CCCCCccccc
Q 013440 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA-EILPPDFVSV 232 (443)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~ 232 (443)
.||+|+++...+...--..++..|++|+.+.+.++..+.... ..++.-.+|+.|+++.+.. ++....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~--------~~iAkN~~L~~lnlsm~sG~t~n~~~---- 253 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV--------NTIAKNSNLVRLNLSMCSGFTENALQ---- 253 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH--------HHHhccccceeeccccccccchhHHH----
Confidence 478888877544444444557788888888888877766554 6777777888888875443 222211
Q ss_pred cCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCc---cccccccccCCC
Q 013440 233 ELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGV---QSVVHELDDGEG 309 (443)
Q Consensus 233 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~~~~~~~~~~~~ 309 (443)
..+.+|+.|..|++++|...... ....+...-++|+.|+|+++... ..+... ..+
T Consensus 254 ------------------ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL---~~r 311 (419)
T KOG2120|consen 254 ------------------LLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTL---VRR 311 (419)
T ss_pred ------------------HHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH---HHh
Confidence 22456777777777776654433 12223334478889999887532 222222 348
Q ss_pred CCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccc
Q 013440 310 FPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYL 384 (443)
Q Consensus 310 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~ 384 (443)
||+|.+|+|++|-.++. ..+.....|+.|++|.++.|-.+ +...+.+.++.|+|.+|++.+|-.-+..
T Consensus 312 cp~l~~LDLSD~v~l~~----~~~~~~~kf~~L~~lSlsRCY~i---~p~~~~~l~s~psl~yLdv~g~vsdt~m 379 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKN----DCFQEFFKFNYLQHLSLSRCYDI---IPETLLELNSKPSLVYLDVFGCVSDTTM 379 (419)
T ss_pred CCceeeeccccccccCc----hHHHHHHhcchheeeehhhhcCC---ChHHeeeeccCcceEEEEeccccCchHH
Confidence 99999999999976653 23346678999999999999754 3333455788999999999998665443
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.9e-10 Score=104.68 Aligned_cols=138 Identities=17% Similarity=0.147 Sum_probs=78.3
Q ss_pred hcCCCCCEEEcCCCcccccc--ccccCCCCCcEEEecCCCCCC----cccccCCCCCCEEEcCCCCCCCCchh--hcCCC
Q 013440 82 EGMEGLKVLQFPGIGSSSLP--SSLGRLINLQTLCLDWCELAD----IAAIGQLKKLEILSLAYSNINQLPVE--IGQLT 153 (443)
Q Consensus 82 ~~l~~L~~L~l~~~~~~~~p--~~l~~l~~L~~L~l~~~~l~~----~~~~~~l~~L~~L~l~~~~~~~lp~~--~~~l~ 153 (443)
+++.+|+...+..+.+...+ .....|++++.|++++|-+.. ...+..+++|+.|+++.|++.-.... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45677777777777766555 355667777777777776555 24455677777777777755422111 12455
Q ss_pred CCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCC
Q 013440 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (443)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (443)
.|+.|.+++|.+...-...++..+++|..|.+..|....... .....++.|+.|+|++|.+..++.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~--------~~~~i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA--------TSTKILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec--------chhhhhhHHhhccccCCccccccc
Confidence 666666666655443333345556666666666653111110 122334556666666666655543
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=3.1e-10 Score=107.82 Aligned_cols=190 Identities=21% Similarity=0.251 Sum_probs=151.8
Q ss_pred EEeCCCCCCCCCCCcC---CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecC
Q 013440 41 AISLPHRDIQELPERL---QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117 (443)
Q Consensus 41 ~L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~ 117 (443)
+|.+++..++.+|... .+.--...+++.|.+ ..+|..+ ..|..|..+.+..|.+..+|..+..+..|.+++++.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~--~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF--SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcccccc--ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence 4566666666666433 444455678888885 7778775 568888999999999999999999999999999999
Q ss_pred CCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccccc
Q 013440 118 CELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVE 196 (443)
Q Consensus 118 ~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 196 (443)
|.++. |..+..|+ |+.|.+++|+++.+|..++.++.|..|+++.|. +..+|.. ++.+.+|+.|.+..|.+...+
T Consensus 131 NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~~lp-- 205 (722)
T KOG0532|consen 131 NQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLEDLP-- 205 (722)
T ss_pred chhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhhhCC--
Confidence 99888 67776666 999999999999999999999999999999855 4556665 788999999999988776544
Q ss_pred CCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEEecCCCC
Q 013440 197 GGSNASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIRIGDGPE 246 (443)
Q Consensus 197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~ 246 (443)
.++..+ .|.+|++++|++..+|..+ .+.+|+.+.+..++..+
T Consensus 206 -------~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 206 -------EELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred -------HHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 566666 4899999999999999887 56888888885554433
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=1.4e-08 Score=98.71 Aligned_cols=175 Identities=25% Similarity=0.286 Sum_probs=107.5
Q ss_pred hcCCCCCEEEcCCCccccccccccCCC-CCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEe
Q 013440 82 EGMEGLKVLQFPGIGSSSLPSSLGRLI-NLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159 (443)
Q Consensus 82 ~~l~~L~~L~l~~~~~~~~p~~l~~l~-~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 159 (443)
..+..+..|++.++.++.++....... +|+.|+++++.+.. +..++.+++|+.|++++|++..+|...+..++|+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 345667777777777777766666663 77777777777666 3566777777777777777777766666777777777
Q ss_pred ccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEE
Q 013440 160 LSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYK 238 (443)
Q Consensus 160 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~ 238 (443)
+++ +.+..+|.. +.....|+++.++.|.... .+..+..+.++..+.+..|....++... ..+.++.++
T Consensus 193 ls~-N~i~~l~~~-~~~~~~L~~l~~~~N~~~~---------~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 193 LSG-NKISDLPPE-IELLSALEELDLSNNSIIE---------LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLD 261 (394)
T ss_pred ccC-CccccCchh-hhhhhhhhhhhhcCCccee---------cchhhhhcccccccccCCceeeeccchhccccccceec
Confidence 777 444555543 2344557777776663211 1144555666666666666665544333 335566666
Q ss_pred EEecCCCCCCCCchhcccccceeEEEcCcccc
Q 013440 239 IRIGDGPEDEFDPLLVKSEASRLMMLKGIKKV 270 (443)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (443)
+......+... +....+++.+++.++...
T Consensus 262 ~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 262 LSNNQISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccccccccc---ccccCccCEEeccCcccc
Confidence 65444444331 466677777777776553
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.4e-10 Score=98.61 Aligned_cols=182 Identities=20% Similarity=0.107 Sum_probs=108.4
Q ss_pred CCCCEEEcCCCCCC--CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc
Q 013440 130 KKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE 207 (443)
Q Consensus 130 ~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 207 (443)
..|++|||++..++ .+...+.++.+|+.|.+.++...+.+... +.+-.+|+.++++.+.-... ++..--+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~------n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE------NALQLLLS 257 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch------hHHHHHHH
Confidence 35889999999887 45566788999999999997777777665 77888999999988643222 22334568
Q ss_pred CCCCCCEEEeecCCCCC-CCCcc---ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhh
Q 013440 208 RLTELTTLEIEVPDAEI-LPPDF---VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLL 283 (443)
Q Consensus 208 ~l~~L~~L~l~~~~~~~-~~~~~---~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 283 (443)
.++.|..|+++|+.... ....+ ..++|+.|++ +|+...-...-...+..-+
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl-------------------------sG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL-------------------------SGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh-------------------------hhhHhhhhhhHHHHHHHhC
Confidence 89999999999987632 22111 2255555555 3322110000011122233
Q ss_pred cccceeeccccCCcccc-ccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccc
Q 013440 284 QRTEDLWLETLEGVQSV-VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL 350 (443)
Q Consensus 284 ~~L~~L~L~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 350 (443)
|++..|+|+.+..+++- ...+. .|+.|++|.++.|+.+ ...........|.|.+|++.+|
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~---kf~~L~~lSlsRCY~i----~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFF---KFNYLQHLSLSRCYDI----IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CceeeeccccccccCchHHHHHH---hcchheeeehhhhcCC----ChHHeeeeccCcceEEEEeccc
Confidence 66666666665554432 12222 5666666666666533 1222334455666666666665
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=1.7e-08 Score=98.18 Aligned_cols=188 Identities=26% Similarity=0.303 Sum_probs=136.0
Q ss_pred EEeCCCCCC-CCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCC-CCCEEEcCCCccccccccccCCCCCcEEEecCC
Q 013440 41 AISLPHRDI-QELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGME-GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118 (443)
Q Consensus 41 ~L~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~ 118 (443)
.+....+.+ .........+.++.|.+.++.. ..++... ..+. +|+.|+++++.+..+|..++.+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i--~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNI--TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccc--ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 355555555 3333334667788888888885 6666643 3443 889999999988888777888899999999998
Q ss_pred CCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccC
Q 013440 119 ELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG 197 (443)
Q Consensus 119 ~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 197 (443)
.+.+ +...+.++.|+.|+++++.+..+|..+..+..|+.+.+++|........ +..+.++..+.+..+.....
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~~---- 247 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLEDL---- 247 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeeec----
Confidence 8888 4555588888999999998888888777777788888888644443332 56777777777776665432
Q ss_pred CCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEec
Q 013440 198 GSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIG 242 (443)
Q Consensus 198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 242 (443)
+..++.++++++|+++.|.+..++......+++.+++...
T Consensus 248 -----~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 248 -----PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred -----cchhccccccceeccccccccccccccccCccCEEeccCc
Confidence 2556778888888888888887777334577888877543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=1.4e-09 Score=95.63 Aligned_cols=128 Identities=21% Similarity=0.258 Sum_probs=78.1
Q ss_pred hccCCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440 33 ETIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ 111 (443)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~ 111 (443)
...+.-++.+++++|.++.+.... -.|++|.|++++|.. ..+.. +..+.+|..||+++|.++.+--+-..+.+++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i--~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI--RTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccce--eeehh--hhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 334455666677776666665555 456677777777664 33333 3456667777777776655433334556666
Q ss_pred EEEecCCCCCCcccccCCCCCCEEEcCCCCCCCC--chhhcCCCCCCEEeccCCc
Q 013440 112 TLCLDWCELADIAAIGQLKKLEILSLAYSNINQL--PVEIGQLTRLQLLDLSNCW 164 (443)
Q Consensus 112 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~l--p~~~~~l~~L~~L~l~~~~ 164 (443)
+|.+..|.+.+..+++.+.+|..||+++|++..+ ..+++++|-|+++.+.+|+
T Consensus 356 tL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 356 TLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 6777776666666666667777777777666633 2356666666666666644
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.52 E-value=1.3e-08 Score=91.39 Aligned_cols=62 Identities=8% Similarity=-0.047 Sum_probs=28.2
Q ss_pred CCCCCCEEEeecCCCCCCCCcc------ccccCcEEEEEecCCCCCCC---CchhcccccceeEEEcCccc
Q 013440 208 RLTELTTLEIEVPDAEILPPDF------VSVELQRYKIRIGDGPEDEF---DPLLVKSEASRLMMLKGIKK 269 (443)
Q Consensus 208 ~l~~L~~L~l~~~~~~~~~~~~------~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~ 269 (443)
.-++|+++....|.....+... ..+.|+.+++..+.+..... ...+..|++|+.|++.+|.+
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence 3345555555555544333221 11344444444333322211 12345666666666666554
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.42 E-value=7.5e-07 Score=91.11 Aligned_cols=105 Identities=22% Similarity=0.281 Sum_probs=78.7
Q ss_pred CCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC-CCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEc
Q 013440 109 NLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (443)
Q Consensus 109 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 185 (443)
.++.|+++++.+.. +..++.+++|+.|++++|.+. .+|..++++++|+.|++++|.+.+.+|.. ++.+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 36778888888766 577888888888888888777 67777888888888888887777777765 678888888888
Q ss_pred cCCCCCcccccCCCchhhhhccC-CCCCCEEEeecCCC
Q 013440 186 GNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPDA 222 (443)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~ 222 (443)
++|.+....+ ..++. ..++..+++.+|..
T Consensus 498 s~N~l~g~iP--------~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVP--------AALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCC--------hHHhhccccCceEEecCCcc
Confidence 8887765554 44443 24566777777754
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=1.1e-06 Score=89.96 Aligned_cols=103 Identities=22% Similarity=0.401 Sum_probs=83.6
Q ss_pred CCCEEEcCCCcccc-ccccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC-CCchhhcCCCCCCEEecc
Q 013440 86 GLKVLQFPGIGSSS-LPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLS 161 (443)
Q Consensus 86 ~L~~L~l~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~ 161 (443)
.++.|+++++.+.. +|..++.+++|++|++++|.+.. +..++.+++|+.|++++|.+. .+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37778888888864 78888889999999999988875 567888999999999999887 688888999999999999
Q ss_pred CCccccccchHHhhc-CCCCcEEEccCCC
Q 013440 162 NCWWLEVIAPNVISK-LSQLEELYMGNGF 189 (443)
Q Consensus 162 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 189 (443)
+|.+.+.+|.. +.. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 98888888876 343 3466778877764
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=3.9e-07 Score=62.64 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=25.3
Q ss_pred CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCC
Q 013440 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWC 118 (443)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~ 118 (443)
+|+.|++++|.. ..++...|.++++|++|++++|.++.++ ..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444442 3444444444444444444444444433 23344444444444444
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.38 E-value=1.5e-07 Score=96.13 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=83.8
Q ss_pred CCCeEEeCCCCCC--CCCCC-cC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcE
Q 013440 37 KDPIAISLPHRDI--QELPE-RL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT 112 (443)
Q Consensus 37 ~~l~~L~l~~~~~--~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~ 112 (443)
.++++|++.|... ...+. .. .+|.|++|.+++-.+..++ ...++.++++|+.||+++++++.+ .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4567777766443 22221 11 5677777777775542222 344566777777777777777666 56677777777
Q ss_pred EEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCch-------hhcCCCCCCEEeccCCccccccchHHhhcCCCCcE
Q 013440 113 LCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPV-------EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEE 182 (443)
Q Consensus 113 L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp~-------~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 182 (443)
|.+.+-.+.. +..+-+|++|++||+++......+. .-..+|+|+.||.++....+.+-...+..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 7776666554 4566667777777777663332221 11236677777776644444444333444444544
Q ss_pred EE
Q 013440 183 LY 184 (443)
Q Consensus 183 L~ 184 (443)
..
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 44
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=3.6e-07 Score=62.81 Aligned_cols=58 Identities=29% Similarity=0.391 Sum_probs=47.6
Q ss_pred CCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCC
Q 013440 85 EGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNI 142 (443)
Q Consensus 85 ~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~ 142 (443)
++|++|++++|.++.+| ..|.++++|++|++++|.+.. +..+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46888899988888876 467888899999999888877 46788889999999888864
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.29 E-value=2.6e-07 Score=83.30 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=135.7
Q ss_pred CCCCeEEeCCCCCC----CCCCC--------cCCCCCCcEEEcccCCCCCccC--cHHHHhcCCCCCEEEcCCCcccc--
Q 013440 36 QKDPIAISLPHRDI----QELPE--------RLQCPNLQLFLLYTEGNGPMQV--SDHFFEGMEGLKVLQFPGIGSSS-- 99 (443)
Q Consensus 36 ~~~l~~L~l~~~~~----~~l~~--------~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~-- 99 (443)
.+.+|..++++-.. .++|. ...+++|+.|++|.|-+....+ ...++.++..|+.|.+.+|.+..
T Consensus 57 ~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a 136 (382)
T KOG1909|consen 57 KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA 136 (382)
T ss_pred cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhH
Confidence 34677777765332 33332 2267899999999988722222 23455778999999999998652
Q ss_pred ---cc---------ccccCCCCCcEEEecCCCCCC------cccccCCCCCCEEEcCCCCCC-----CCchhhcCCCCCC
Q 013440 100 ---LP---------SSLGRLINLQTLCLDWCELAD------IAAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQ 156 (443)
Q Consensus 100 ---~p---------~~l~~l~~L~~L~l~~~~l~~------~~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~ 156 (443)
+. +.+..=++|+++...+|.+.+ ...++.++.|+.+.+..|.+. .+...+.++++|+
T Consensus 137 g~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Le 216 (382)
T KOG1909|consen 137 GGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLE 216 (382)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcce
Confidence 11 122344689999999998766 166777889999999988765 2344678899999
Q ss_pred EEeccCCccccccch---HHhhcCCCCcEEEccCCCCCcccccCCCchhhhhc-cCCCCCCEEEeecCCCCCCCCcc---
Q 013440 157 LLDLSNCWWLEVIAP---NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL-ERLTELTTLEIEVPDAEILPPDF--- 229 (443)
Q Consensus 157 ~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~--- 229 (443)
.|++..|.+...... ..+..+++|+++++++|.+..... .++...+ ...++|+.|.+.+|.++.-....
T Consensus 217 vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga----~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 217 VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA----IAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred eeecccchhhhHHHHHHHHHhcccchheeecccccccccccH----HHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 999998765543321 225667789999999987765543 1222233 33678999999988874322111
Q ss_pred ---ccccCcEEEEEecCC
Q 013440 230 ---VSVELQRYKIRIGDG 244 (443)
Q Consensus 230 ---~~~~L~~l~l~~~~~ 244 (443)
-.+.|..|.+..+..
T Consensus 293 ~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcchhhHHhcCCcccc
Confidence 237888888865544
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=1.2e-08 Score=99.84 Aligned_cols=101 Identities=26% Similarity=0.307 Sum_probs=50.1
Q ss_pred CCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCc
Q 013440 86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164 (443)
Q Consensus 86 ~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 164 (443)
.|.+.+.++|.+.-+-.++.-+++|+.|++++|++.+...+.+|++|++|||++|.++.+|.- ...++ |+.|.+.+|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA 243 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence 344444555554444444555555666666666655544555566666666666655544432 22222 5555555532
Q ss_pred cccccchHHhhcCCCCcEEEccCCCC
Q 013440 165 WLEVIAPNVISKLSQLEELYMGNGFS 190 (443)
Q Consensus 165 ~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (443)
.+.+-. +.++.+|+.|++++|-+
T Consensus 244 -l~tL~g--ie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 244 -LTTLRG--IENLKSLYGLDLSYNLL 266 (1096)
T ss_pred -HHhhhh--HHhhhhhhccchhHhhh
Confidence 222221 34455555555555443
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.11 E-value=2.5e-06 Score=87.29 Aligned_cols=136 Identities=21% Similarity=0.200 Sum_probs=88.3
Q ss_pred CCCCCEEEcCCCccc--ccccccc-CCCCCcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCE
Q 013440 84 MEGLKVLQFPGIGSS--SLPSSLG-RLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157 (443)
Q Consensus 84 l~~L~~L~l~~~~~~--~~p~~l~-~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 157 (443)
-.+|++|+++|.... ..|..++ .||.|+.|.+.+-.+.. .....++++|..||++++.++.+ .+++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 477888888886532 3454444 37888888888766433 35566788888888888888877 67888888888
Q ss_pred EeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCC
Q 013440 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (443)
Q Consensus 158 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (443)
|.+.+-.+.....-..+-.+++|+.||++.........- ...-.+.-..+|+|+.|+.+++++
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~i--i~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKI--IEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHH--HHHHHHhcccCccccEEecCCcch
Confidence 887764443322211256788888888876543332210 001112234478888888887776
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.03 E-value=5.3e-07 Score=88.01 Aligned_cols=128 Identities=25% Similarity=0.332 Sum_probs=73.9
Q ss_pred CCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEc
Q 013440 58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSL 137 (443)
Q Consensus 58 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l 137 (443)
+..+..+.+..|.. ...... ...+..|.+|++.+|.+..+...+..+++|++|++++|.|+++..+..+..|+.|++
T Consensus 71 l~~l~~l~l~~n~i--~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLI--AKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhh--hhhhcc-cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 34444444555543 221111 245667777777777776665445667777777777777766666666666777777
Q ss_pred CCCCCCCCchhhcCCCCCCEEeccCCccccccch-HHhhcCCCCcEEEccCCCCC
Q 013440 138 AYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP-NVISKLSQLEELYMGNGFSG 191 (443)
Q Consensus 138 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 191 (443)
.+|.++.+. .+..+++|+.+++++|.+. .+.. . ...+.+++.+.++.|.+.
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchh
Confidence 777666552 3444666777777664332 2222 1 245566666666666543
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=9.4e-06 Score=51.17 Aligned_cols=37 Identities=32% Similarity=0.429 Sum_probs=20.7
Q ss_pred CCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC
Q 013440 86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD 122 (443)
Q Consensus 86 ~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~ 122 (443)
+|++|++++|.++.+|+.+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4566666666666655555566666666666665544
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=1.3e-06 Score=85.18 Aligned_cols=188 Identities=20% Similarity=0.219 Sum_probs=125.4
Q ss_pred cCCCCeEEeCCCCCCCCCC-CcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEE
Q 013440 35 IQKDPIAISLPHRDIQELP-ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L 113 (443)
.+..+..+.+..+.+.... ....+..|..|++..|.+ ..+... ...+.+|++|++++|.|+.+. .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i--~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI--EKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccch--hhcccc-hhhhhcchheecccccccccc-chhhccchhhh
Confidence 4455666667777776533 344788889999988885 444432 367899999999999988763 36677789999
Q ss_pred EecCCCCCCcccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440 114 CLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (443)
Q Consensus 114 ~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (443)
++.+|.+..+..+..+..|+.+++++|.++.+... ...+.+++.+++.+|.+...-. +..+..+..+++..|.+..
T Consensus 146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~---~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 146 NLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG---LDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred eeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc---hHHHHHHHHhhccccccee
Confidence 99999998888888899999999999988877554 5778888888888865433322 2233344444555554422
Q ss_pred ccccCCCchhhhhccCCCC--CCEEEeecCCCCCCCCcc-ccccCcEEEE
Q 013440 193 EKVEGGSNASLVELERLTE--LTTLEIEVPDAEILPPDF-VSVELQRYKI 239 (443)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~-~~~~L~~l~l 239 (443)
. ..+..+.. |+.+.+.+|.+...+..+ ....+..+++
T Consensus 223 ~----------~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 223 L----------EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDL 262 (414)
T ss_pred c----------cCcccchhHHHHHHhcccCccccccccccccccccccch
Confidence 1 22222222 777788888776653222 3455555555
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=3.3e-06 Score=74.73 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=45.9
Q ss_pred cccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccc
Q 013440 284 QRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE 363 (443)
Q Consensus 284 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 363 (443)
+.+++++...|.........-. ...||++..+.+.+|+-- .. ..-.....||.+-.|.+.. +++-++ +.+.+
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l-~r~Fpnv~sv~v~e~PlK-~~---s~ek~se~~p~~~~LnL~~-~~idsw--asvD~ 244 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKL-SRIFPNVNSVFVCEGPLK-TE---SSEKGSEPFPSLSCLNLGA-NNIDSW--ASVDA 244 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhH-HhhcccchheeeecCccc-ch---hhcccCCCCCcchhhhhcc-cccccH--HHHHH
Confidence 3455555555543221111111 336777777777777521 11 1112445566666666654 233333 22333
Q ss_pred cccccccceeeeccCcCccc
Q 013440 364 DQSFSNLRIINVDSCRKLKY 383 (443)
Q Consensus 364 ~~~~~~L~~L~i~~c~~l~~ 383 (443)
+..||.|+.|.+.+-|-...
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred HcCCchhheeeccCCccccc
Confidence 55677777777766555443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=4.6e-06 Score=73.80 Aligned_cols=85 Identities=26% Similarity=0.319 Sum_probs=65.8
Q ss_pred HHHhcCCCCCEEEcCCCcccc---ccccccCCCCCcEEEecCCCCCC-cccc-cCCCCCCEEEcCCCCCC--CCchhhcC
Q 013440 79 HFFEGMEGLKVLQFPGIGSSS---LPSSLGRLINLQTLCLDWCELAD-IAAI-GQLKKLEILSLAYSNIN--QLPVEIGQ 151 (443)
Q Consensus 79 ~~~~~l~~L~~L~l~~~~~~~---~p~~l~~l~~L~~L~l~~~~l~~-~~~~-~~l~~L~~L~l~~~~~~--~lp~~~~~ 151 (443)
.+...+..++.+|+.+|.++. +...+.++|+|++|+++.|.+.. +... -.+.+|+.|.|.++.+. .....+..
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 344678899999999998865 55556789999999999999877 5444 46788999999988665 45556677
Q ss_pred CCCCCEEeccCC
Q 013440 152 LTRLQLLDLSNC 163 (443)
Q Consensus 152 l~~L~~L~l~~~ 163 (443)
+|.++.|.++.|
T Consensus 145 lP~vtelHmS~N 156 (418)
T KOG2982|consen 145 LPKVTELHMSDN 156 (418)
T ss_pred chhhhhhhhccc
Confidence 888888877775
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.87 E-value=3.9e-07 Score=89.57 Aligned_cols=153 Identities=19% Similarity=0.145 Sum_probs=102.3
Q ss_pred hhccCCCCeEEeCCCCCCCCCCCcC---------------------------------CCCCCcEEEcccCCCCCccCcH
Q 013440 32 EETIQKDPIAISLPHRDIQELPERL---------------------------------QCPNLQLFLLYTEGNGPMQVSD 78 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~l~~~~---------------------------------~~~~L~~L~l~~~~~~~~~~~~ 78 (443)
++--+..+|+|.+.++.+..+.+.. -..+|.+.+++||.. ..+..
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~ 181 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDE 181 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHH
Confidence 4455678999999988874433211 112344445555543 22222
Q ss_pred HHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcc--cccCCCCCCEEEcCCCCCCCCchhhcCCCCCC
Q 013440 79 HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156 (443)
Q Consensus 79 ~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~ 156 (443)
+ +.-++.|+.|+++.|.++++. .+..|++|++|++++|.+..++ ....|. |+.|.+++|.++++ .++.++++|+
T Consensus 182 S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~ 257 (1096)
T KOG1859|consen 182 S-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLY 257 (1096)
T ss_pred H-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhh
Confidence 2 345788888999999888775 6788899999999999877732 223344 88999999988877 5688899999
Q ss_pred EEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440 157 LLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (443)
Q Consensus 157 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (443)
.||++.|-+.+.-.-.-+..+..|+.|.+.+|++
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999885433322212255667788888888765
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.75 E-value=5.4e-06 Score=82.82 Aligned_cols=247 Identities=16% Similarity=0.120 Sum_probs=118.8
Q ss_pred CCCCCCEEeccCCccccccc-hHHhhcCCCCcEEEccCC-CCCcccccCCCchhhhhccCCCCCCEEEeecCC-CCCCCC
Q 013440 151 QLTRLQLLDLSNCWWLEVIA-PNVISKLSQLEELYMGNG-FSGWEKVEGGSNASLVELERLTELTTLEIEVPD-AEILPP 227 (443)
Q Consensus 151 ~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~ 227 (443)
.++.|+.+.+.+|....... ..+...+++|+.|+++++ ....... .........+++|+.|++.++. +.+..-
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP----LLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch----hHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 36677777776665444421 123556677777777652 1111000 0111233455667777776665 332221
Q ss_pred cc---ccccCcEEEEEecC-CCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCC---cccc
Q 013440 228 DF---VSVELQRYKIRIGD-GPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG---VQSV 300 (443)
Q Consensus 228 ~~---~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~---~~~~ 300 (443)
.. .|++|+.+.+..+. ..+.........++.|+.|++++|........... ...+++++.+.+..... +...
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~ 340 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDL 340 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHHHH
Confidence 11 24667776643333 22222223345667777777777655322222222 22235555554443332 2211
Q ss_pred ccccccCCCC-CCccEEEEecccCceeecccccccccCccCccc-ceecccccccc-ccccccccccccccccceeeecc
Q 013440 301 VHELDDGEGF-PRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLE-ALSLMFLTNLE-TICYSQLREDQSFSNLRIINVDS 377 (443)
Q Consensus 301 ~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~-~~~~~~~~~~~~~~~L~~L~i~~ 377 (443)
..... .... -.++.+.+..|++++... ..... ..... .+.+.+|+.++ .+... ...+..++.|++..
T Consensus 341 ~l~~~-~~~~~d~~~~~~~~~~~~l~~~~----l~~~~-~~~~~~~~~l~gc~~l~~~l~~~----~~~~~~l~~L~l~~ 410 (482)
T KOG1947|consen 341 SLSGL-LTLTSDDLAELILRSCPKLTDLS----LSYCG-ISDLGLELSLRGCPNLTESLELR----LCRSDSLRVLNLSD 410 (482)
T ss_pred HHHHh-hccCchhHhHHHHhcCCCcchhh----hhhhh-ccCcchHHHhcCCcccchHHHHH----hccCCccceEeccc
Confidence 11000 0011 133333333333333221 00111 11111 45666666662 22111 12234489999999
Q ss_pred CcCcccccChhhhhcccccceeeeccCcccccccc
Q 013440 378 CRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412 (443)
Q Consensus 378 c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~ 412 (443)
|..++..........+..+..+.+.+|+.+.....
T Consensus 411 ~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 411 CRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred CccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 99998876544433478889999999988876653
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=7e-05 Score=47.17 Aligned_cols=33 Identities=42% Similarity=0.621 Sum_probs=15.8
Q ss_pred CCCEEEcCCCCCCCCchhhcCCCCCCEEeccCC
Q 013440 131 KLEILSLAYSNINQLPVEIGQLTRLQLLDLSNC 163 (443)
Q Consensus 131 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 163 (443)
+|++|++++|.++.+|..+++|++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 345555555555555444555555555555553
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=4.9e-06 Score=65.15 Aligned_cols=106 Identities=18% Similarity=0.206 Sum_probs=63.7
Q ss_pred eEEeCCCCCCCCCCC----cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEe
Q 013440 40 IAISLPHRDIQELPE----RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (443)
Q Consensus 40 ~~L~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l 115 (443)
-.++++.|.+-.++. .+....|+..++++|.+ +.+|..+-.+++.+..|++..|.+..+|.++..++.|+.+++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 344555554432222 22445566667777764 666666655666677777777777777766666777777777
Q ss_pred cCCCCCC-cccccCCCCCCEEEcCCCCCCCCch
Q 013440 116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPV 147 (443)
Q Consensus 116 ~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~ 147 (443)
+.|.+.. +..+..+.+|-+|+..++.+..++.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 7666655 5555556666666666665544443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.00019 Score=60.23 Aligned_cols=99 Identities=19% Similarity=0.249 Sum_probs=53.8
Q ss_pred CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccC-CCCCcEEEecCCCCCC---cccccCCCCCCEE
Q 013440 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR-LINLQTLCLDWCELAD---IAAIGQLKKLEIL 135 (443)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~-l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L 135 (443)
..-.++++.|.. ..++. |..++.|..|.+..|.|+.+.+.+.. +++|..|.+.+|.+.. +.....|++|++|
T Consensus 43 ~~d~iDLtdNdl--~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDL--RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccch--hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 444566666653 33322 45566666666666666665444433 3456666666666544 4445556666666
Q ss_pred EcCCCCCCCCch----hhcCCCCCCEEeccC
Q 013440 136 SLAYSNINQLPV----EIGQLTRLQLLDLSN 162 (443)
Q Consensus 136 ~l~~~~~~~lp~----~~~~l~~L~~L~l~~ 162 (443)
.+-+|.++.-+. .+..+++|+.||+.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 666665552221 244555555555544
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00034 Score=58.80 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=84.4
Q ss_pred CCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc--ccccCCCCCcEEE
Q 013440 37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP--SSLGRLINLQTLC 114 (443)
Q Consensus 37 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p--~~l~~l~~L~~L~ 114 (443)
...-.+++.+|++..++....+++|.+|.+..|.+ ..+...+..-+++|..|.+.+|++..+. ..+..|+.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI--t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI--TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcc--eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 35667889999998888888999999999999995 5555555566889999999999987643 3356799999999
Q ss_pred ecCCCCCC-----cccccCCCCCCEEEcCCC
Q 013440 115 LDWCELAD-----IAAIGQLKKLEILSLAYS 140 (443)
Q Consensus 115 l~~~~l~~-----~~~~~~l~~L~~L~l~~~ 140 (443)
+-+|.... ...+..+++|++||..+-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99998765 477889999999999764
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.00019 Score=68.10 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=20.7
Q ss_pred cccceeeeccCcCcccccChhhhhcccccceeeeccC
Q 013440 368 SNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC 404 (443)
Q Consensus 368 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C 404 (443)
++|++|.+.+|..+. +|. . ++ .+|+.|.+..+
T Consensus 156 sSLk~L~Is~c~~i~-LP~-~-LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPE-K-LP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Ccc-c-cc--ccCcEEEeccc
Confidence 678888888887663 221 1 12 57788887654
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.41 E-value=0.00072 Score=64.23 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=81.7
Q ss_pred hccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCC-ccccccccccCCCCCc
Q 013440 33 ETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGI-GSSSLPSSLGRLINLQ 111 (443)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~p~~l~~l~~L~ 111 (443)
+..+..+++|++++|.+..+|. -.++|++|.+++|.. ...+|..+ ...|++|++++| .+..+|+. |+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~n-LtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV--LPNELTEITIENCNN-LTTLPGSI---PEGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCC-cccCCchh---hhhhhheEccCcccccccccc------cc
Confidence 4456889999999998888883 234699999998765 45666543 368999999998 56666654 66
Q ss_pred EEEecCCCCCCcccccCC-CCCCEEEcCCCCCC---CCchhhcCC-CCCCEEeccCCccccccchHHhhcCCCCcEEEcc
Q 013440 112 TLCLDWCELADIAAIGQL-KKLEILSLAYSNIN---QLPVEIGQL-TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (443)
Q Consensus 112 ~L~l~~~~l~~~~~~~~l-~~L~~L~l~~~~~~---~lp~~~~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 186 (443)
+|++..+.... +..+ .+|+.|.+.++... .+|. .+ ++|+.|.+.+|... .+|.. +. .+|+.|.++
T Consensus 116 ~L~L~~n~~~~---L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~-LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDS---IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEK-LP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcc---cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccc-cc--ccCcEEEec
Confidence 66676554322 1111 24556655432211 1111 12 46888888776533 23321 11 467777776
Q ss_pred CC
Q 013440 187 NG 188 (443)
Q Consensus 187 ~~ 188 (443)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 54
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.40 E-value=4.4e-05 Score=76.28 Aligned_cols=144 Identities=20% Similarity=0.142 Sum_probs=78.5
Q ss_pred cccccceeEEEcCccccccccccchhhHhhcccceeecccc-CCccccc--cccccCCCCCCccEEEEecccCceeeccc
Q 013440 254 VKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETL-EGVQSVV--HELDDGEGFPRLKRLLVTDCSEILHIVGS 330 (443)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 330 (443)
..++.++.+.+.++....... ...+....++|+.|+++++ ......+ .... ...+++|+.|++..|..+++.
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~isd~--- 259 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLL-LSICRKLKSLDLSGCGLVTDI--- 259 (482)
T ss_pred hhCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhh-hhhcCCcCccchhhhhccCch---
Confidence 346777777777654433322 1123333477777777762 2211111 0111 335677777777777655432
Q ss_pred ccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccC
Q 013440 331 VRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC 404 (443)
Q Consensus 331 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C 404 (443)
........+|+|+.|.+.+|..+++-....+ ...++.|++|++++|..+++........+++.|+.+.+..+
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i--~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDEGLVSI--AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchhHHHHH--HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 1112223367777777777766555443222 24467777777777777766544455556666666554444
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=8.5e-06 Score=71.51 Aligned_cols=106 Identities=26% Similarity=0.287 Sum_probs=68.6
Q ss_pred CCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEcc
Q 013440 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (443)
Q Consensus 107 l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 186 (443)
+.+.+.|+..+|.+.++....+++.|++|.|+-|+|+.+ ..+..|++|+.|++..|.+.+--....+.++++|+.|.+.
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 445667777777777777777778888888888877766 3467777888888777543332222336777788888887
Q ss_pred CCCCCcccccCCCchhhhhccCCCCCCEEE
Q 013440 187 NGFSGWEKVEGGSNASLVELERLTELTTLE 216 (443)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (443)
.|+....... +-....+.-++||++|+
T Consensus 97 ENPCc~~ag~---nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQ---NYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccch---hHHHHHHHHcccchhcc
Confidence 7765443321 11224456677777665
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.36 E-value=2.2e-05 Score=61.65 Aligned_cols=101 Identities=20% Similarity=0.224 Sum_probs=64.8
Q ss_pred CcEEEcccCCC-CCccCcHHHHhcCCCCCEEEcCCCccccccccccC-CCCCcEEEecCCCCCC-cccccCCCCCCEEEc
Q 013440 61 LQLFLLYTEGN-GPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR-LINLQTLCLDWCELAD-IAAIGQLKKLEILSL 137 (443)
Q Consensus 61 L~~L~l~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~-l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l 137 (443)
+..+++++|.. ++.+.+.. ..+..+|...++++|.+..+|+.|.. .+.+.+|++.+|.+++ |..+..++.|+.+++
T Consensus 29 ~h~ldLssc~lm~i~davy~-l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYM-LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHH-HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 44566666654 01222222 24566677777777777777766644 3467777777777777 655667777777777
Q ss_pred CCCCCCCCchhhcCCCCCCEEeccC
Q 013440 138 AYSNINQLPVEIGQLTRLQLLDLSN 162 (443)
Q Consensus 138 ~~~~~~~lp~~~~~l~~L~~L~l~~ 162 (443)
+.|.+...|..+..+.+|..|+..+
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCC
Confidence 7777777777766677777776665
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.13 E-value=0.00016 Score=63.48 Aligned_cols=126 Identities=16% Similarity=0.074 Sum_probs=66.0
Q ss_pred cccccceeEEEcCccccccc-c--ccchhhHhhcccceeeccccCCcccccccccc-CCCCCCccEEEEecccCceeecc
Q 013440 254 VKSEASRLMMLKGIKKVSIL-Q--ENDGTKMLLQRTEDLWLETLEGVQSVVHELDD-GEGFPRLKRLLVTDCSEILHIVG 329 (443)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~-~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~ 329 (443)
.+-.+++.+++..|.+-... . ....+..+ .+|+.|+|..|.....-...+.. ...-+.|+.|.+.+|- +..- +
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~-G 258 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNE-G 258 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccc-c
Confidence 44578888888887553221 0 01112222 78899999887654321111100 1234668999999983 2111 1
Q ss_pred ccc---ccccCccCcccceeccccc----cccccccccccccccccccceeeeccCcCcccc
Q 013440 330 SVR---RVRCEVFPLLEALSLMFLT----NLETICYSQLREDQSFSNLRIINVDSCRKLKYL 384 (443)
Q Consensus 330 ~~~---~~~~~~~~~L~~L~l~~c~----~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~ 384 (443)
... .+..-.+|+|..|...... .+..+....+. ..++|-|..+.+.+ ++++..
T Consensus 259 ~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e-~~~~p~L~~le~ng-Nr~~E~ 318 (388)
T COG5238 259 VKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE-QDAVPLLVDLERNG-NRIKEL 318 (388)
T ss_pred HHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh-hcccHHHHHHHHcc-CcchhH
Confidence 100 1133456777777665432 12222233232 56788888888876 455544
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.00031 Score=59.10 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=18.6
Q ss_pred ccccceeeeccCcCcccccChhhhhcccccceeeeccCccc
Q 013440 367 FSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDL 407 (443)
Q Consensus 367 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l 407 (443)
+|+|+.|+|++|+++++.+. ..+..+++|+.|.+++.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhh
Confidence 44555555555555554432 23344445555544444433
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.00018 Score=63.45 Aligned_cols=98 Identities=23% Similarity=0.185 Sum_probs=70.4
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC---cccccCCCCCC
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLE 133 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~ 133 (443)
.+.+.+.|+.+||.. .++ +++.+|+.|++|.|+-|.|+.+. .+..|.+|+.|++..|.|.+ +.-+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L--~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGL--DDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCc--cHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 356778889998885 544 44788999999999999988863 36788999999999988877 56677888888
Q ss_pred EEEcCCCCCC--CCch----hhcCCCCCCEEe
Q 013440 134 ILSLAYSNIN--QLPV----EIGQLTRLQLLD 159 (443)
Q Consensus 134 ~L~l~~~~~~--~lp~----~~~~l~~L~~L~ 159 (443)
.|.|..|.=. .-+. .+.-+++|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888776322 1111 234466666665
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.0021 Score=56.45 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=37.7
Q ss_pred cCCCCCEEEcCCCccccccccccCCCCCcEEEecCCC--CCC--cccccCCCCCCEEEcCCCCCCCCc--hhhcCCCCCC
Q 013440 83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE--LAD--IAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQ 156 (443)
Q Consensus 83 ~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~--l~~--~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~ 156 (443)
.+..|..|++.++.++.+. .+..+++|++|.++.|. +.. ......+++|+++++++|++..+. .....+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3445555555554443321 12345566666666662 222 233334466666666666554211 1233444444
Q ss_pred EEeccCC
Q 013440 157 LLDLSNC 163 (443)
Q Consensus 157 ~L~l~~~ 163 (443)
.|++..|
T Consensus 120 ~Ldl~n~ 126 (260)
T KOG2739|consen 120 SLDLFNC 126 (260)
T ss_pred hhhcccC
Confidence 5555444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.34 E-value=0.0018 Score=56.80 Aligned_cols=84 Identities=21% Similarity=0.307 Sum_probs=58.6
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCC--ccc-cccccccCCCCCcEEEecCCCCCC---cccccCCC
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGI--GSS-SLPSSLGRLINLQTLCLDWCELAD---IAAIGQLK 130 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~-~~p~~l~~l~~L~~L~l~~~~l~~---~~~~~~l~ 130 (443)
.+..|+.|.+.+... .++.. |..+++|+.|.++.| .+. .++.-...+++|+++++++|++.. +.....+.
T Consensus 41 ~~~~le~ls~~n~gl--tt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGL--TTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccce--eeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 455666666665553 22222 467888899999888 443 344445567999999999998775 56677788
Q ss_pred CCCEEEcCCCCCCC
Q 013440 131 KLEILSLAYSNINQ 144 (443)
Q Consensus 131 ~L~~L~l~~~~~~~ 144 (443)
+|..|++.+|..+.
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 88899999886653
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.00084 Score=56.53 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=40.3
Q ss_pred CCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccc
Q 013440 309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYL 384 (443)
Q Consensus 309 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~ 384 (443)
.+++++.|.+.+|.++.++- -+. -.+.+|+|+.|+|++|+++++..... +..+++|+.|.+.+.+.+...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~-L~~--l~~~~~~L~~L~lsgC~rIT~~GL~~---L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWC-LER--LGGLAPSLQDLDLSGCPRITDGGLAC---LLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred ccchhhhheeccccchhhHH-HHH--hcccccchheeeccCCCeechhHHHH---HHHhhhhHHHHhcCchhhhch
Confidence 55666666666666554331 111 11256677777777777666654332 345677777777666665544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.65 E-value=0.029 Score=44.71 Aligned_cols=56 Identities=18% Similarity=0.395 Sum_probs=20.3
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEec
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLD 116 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~ 116 (443)
++.+|+.+.+... ...+....|.++..|+.+.+..+ +..++ ..+..+.+|+++.+.
T Consensus 10 ~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 10 NCSNLESITFPNT---IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T-TT--EEEETST-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCCCCEEEECCC---eeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 3445555555421 23444444455555555555443 33332 223444445555553
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.61 E-value=0.026 Score=50.08 Aligned_cols=226 Identities=14% Similarity=0.114 Sum_probs=141.1
Q ss_pred cCCCCeEEeCCCCCC----CCCC--------CcCCCCCCcEEEcccCCCCCccCcH---HHHhcCCCCCEEEcCCCcccc
Q 013440 35 IQKDPIAISLPHRDI----QELP--------ERLQCPNLQLFLLYTEGNGPMQVSD---HFFEGMEGLKVLQFPGIGSSS 99 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~----~~l~--------~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~ 99 (443)
...+++..+++.-.. +.++ ...+||+|+..+++.|.+ ....|. .++++-..|..|.+.+|.+..
T Consensus 56 ~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf-g~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 56 NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF-GSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc-CcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 345666666664322 2222 334899999999999987 444433 445788999999999998642
Q ss_pred -----cccc---------ccCCCCCcEEEecCCCCCC-c-----ccccCCCCCCEEEcCCCCCC--CC----chhhcCCC
Q 013440 100 -----LPSS---------LGRLINLQTLCLDWCELAD-I-----AAIGQLKKLEILSLAYSNIN--QL----PVEIGQLT 153 (443)
Q Consensus 100 -----~p~~---------l~~l~~L~~L~l~~~~l~~-~-----~~~~~l~~L~~L~l~~~~~~--~l----p~~~~~l~ 153 (443)
+... ...-+.|+++....|.+.. + ..+.....|+++.+..|.+. .+ --+...+.
T Consensus 135 ~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~ 214 (388)
T COG5238 135 IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH 214 (388)
T ss_pred cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC
Confidence 2211 2345789999999998765 2 34455578999999999776 12 22456789
Q ss_pred CCCEEeccCCccccccch---HHhhcCCCCcEEEccCCCCCcccccCCCchhhhhc--cCCCCCCEEEeecCCCCC-CCC
Q 013440 154 RLQLLDLSNCWWLEVIAP---NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL--ERLTELTTLEIEVPDAEI-LPP 227 (443)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~-~~~ 227 (443)
+|+.|++..|.+...... ..+...+.|++|.+..|-...... .+....+ ...++|..|...+|.... +-.
T Consensus 215 ~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~----~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~ 290 (388)
T COG5238 215 SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV----KSVLRRFNEKFVPNLMPLPGDYNERRGGIIL 290 (388)
T ss_pred cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH----HHHHHHhhhhcCCCccccccchhhhcCceee
Confidence 999999999765443221 124556678999999987765443 1222222 235788999999887632 111
Q ss_pred ccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHh
Q 013440 228 DFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKML 282 (443)
Q Consensus 228 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 282 (443)
.+..+.. .-...+.|..+.+.||.+.+.-.+.+.....
T Consensus 291 ~~~l~~~-----------------e~~~~p~L~~le~ngNr~~E~~d~~d~~~~i 328 (388)
T COG5238 291 DISLNEF-----------------EQDAVPLLVDLERNGNRIKELADFGDYYEDI 328 (388)
T ss_pred eechhhh-----------------hhcccHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 1111110 0145666777777777665544444434333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.59 E-value=0.0068 Score=31.65 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=15.1
Q ss_pred CCCEEEcCCCccccccccccC
Q 013440 86 GLKVLQFPGIGSSSLPSSLGR 106 (443)
Q Consensus 86 ~L~~L~l~~~~~~~~p~~l~~ 106 (443)
+|++|++++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467788888877777766554
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.54 E-value=0.04 Score=43.89 Aligned_cols=105 Identities=17% Similarity=0.302 Sum_probs=52.7
Q ss_pred cHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCch-hhcCC
Q 013440 77 SDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQL 152 (443)
Q Consensus 77 ~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l 152 (443)
+...|.++..|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +.. -..+..+.+++.+.+.+ .+..++. .+..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 344567788888888874 455554 34667777888887764 444 35566777777777765 3443333 34557
Q ss_pred CCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440 153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (443)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 187 (443)
++|+.+.+..+ ...++...+..+ +|+.+.+..
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 77777777542 334444445555 666666543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.77 E-value=0.011 Score=30.80 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=11.0
Q ss_pred CCEEEcCCCCCCCCchhhc
Q 013440 132 LEILSLAYSNINQLPVEIG 150 (443)
Q Consensus 132 L~~L~l~~~~~~~lp~~~~ 150 (443)
|++|++++|.++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666555555443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.34 E-value=0.1 Score=25.21 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=6.0
Q ss_pred CCCEEEcCCCccccc
Q 013440 86 GLKVLQFPGIGSSSL 100 (443)
Q Consensus 86 ~L~~L~l~~~~~~~~ 100 (443)
+|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555554443
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.38 E-value=0.095 Score=28.54 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=10.8
Q ss_pred cccceeeeccCcCccccc
Q 013440 368 SNLRIINVDSCRKLKYLF 385 (443)
Q Consensus 368 ~~L~~L~i~~c~~l~~~~ 385 (443)
++|++|++++|+.+++..
T Consensus 2 ~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 2 PNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCEeCCCCCCCcCHHH
Confidence 556666666666666553
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.36 E-value=0.11 Score=28.24 Aligned_cols=18 Identities=11% Similarity=0.344 Sum_probs=15.8
Q ss_pred ccccceeeeccCcccccc
Q 013440 393 LLRLQKVKVEDCDDLKMI 410 (443)
Q Consensus 393 ~~~L~~L~i~~C~~l~~~ 410 (443)
|++|++|+|++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 578999999999999864
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.31 E-value=0.82 Score=24.65 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=12.1
Q ss_pred CCCCEEEcCCCCCCCCchh
Q 013440 130 KKLEILSLAYSNINQLPVE 148 (443)
Q Consensus 130 ~~L~~L~l~~~~~~~lp~~ 148 (443)
.+|+.|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.31 E-value=0.82 Score=24.65 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=12.1
Q ss_pred CCCCEEEcCCCCCCCCchh
Q 013440 130 KKLEILSLAYSNINQLPVE 148 (443)
Q Consensus 130 ~~L~~L~l~~~~~~~lp~~ 148 (443)
.+|+.|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.24 E-value=0.031 Score=48.44 Aligned_cols=84 Identities=7% Similarity=-0.024 Sum_probs=63.0
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEE
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEIL 135 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L 135 (443)
.+...+.||++.|.. ..+... |+.+..|..|+++.+.+..+|+.++.+..++.++...|..+. |.+.+..++++++
T Consensus 40 ~~kr~tvld~~s~r~--vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRL--VNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHH--Hhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 566777888887764 333333 356777888888888888888888888888888888887777 7788888888888
Q ss_pred EcCCCCCC
Q 013440 136 SLAYSNIN 143 (443)
Q Consensus 136 ~l~~~~~~ 143 (443)
++.++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88887654
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.51 E-value=0.091 Score=51.95 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=8.0
Q ss_pred ccCccCcccceeccc
Q 013440 335 RCEVFPLLEALSLMF 349 (443)
Q Consensus 335 ~~~~~~~L~~L~l~~ 349 (443)
.....+.+..++++.
T Consensus 399 ~~~~~~~l~~~~l~~ 413 (478)
T KOG4308|consen 399 QLASNEKLEILDLSL 413 (478)
T ss_pred hhhhcchhhhhhhhc
Confidence 344556666665543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=74.85 E-value=0.082 Score=45.90 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=75.0
Q ss_pred HhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEe
Q 013440 81 FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159 (443)
Q Consensus 81 ~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 159 (443)
...+....+||++.+....+...++-+..|..++++.+.+.. +..++.+..++.+++..|..+.+|.+.++.+.++.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 356788899999999888887778888888889999888877 7888888999999999998889999999999999999
Q ss_pred ccCCcccccc
Q 013440 160 LSNCWWLEVI 169 (443)
Q Consensus 160 l~~~~~~~~~ 169 (443)
..++.+...+
T Consensus 118 ~k~~~~~~~~ 127 (326)
T KOG0473|consen 118 QKKTEFFRKL 127 (326)
T ss_pred hccCcchHHH
Confidence 8886544433
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.83 E-value=4.5 Score=21.98 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=12.8
Q ss_pred CCCCEEEcCCCCCCCCch
Q 013440 130 KKLEILSLAYSNINQLPV 147 (443)
Q Consensus 130 ~~L~~L~l~~~~~~~lp~ 147 (443)
.+|+.|++++|+++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777765
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.14 E-value=3.2 Score=40.97 Aligned_cols=93 Identities=16% Similarity=0.042 Sum_probs=52.2
Q ss_pred cccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccc
Q 013440 254 VKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRR 333 (443)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 333 (443)
...+.+.++.++.|++.. +.....+....|+|+.|+|+++.....-..++... +..-|++|.+.+++-.+...+....
T Consensus 215 ~n~p~i~sl~lsnNrL~~-Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYH-LDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCcceeeeecccchhhc-hhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccccchhhhHHH
Confidence 456677777777776643 22233344455888888888873222222222201 3455888888888766544322211
Q ss_pred --cccCccCcccceecc
Q 013440 334 --VRCEVFPLLEALSLM 348 (443)
Q Consensus 334 --~~~~~~~~L~~L~l~ 348 (443)
+....||+|..||=.
T Consensus 293 v~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLDGV 309 (585)
T ss_pred HHHHHHhcchheeecCc
Confidence 134478888777543
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.03 E-value=5.4 Score=20.85 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=5.9
Q ss_pred CCCCEEEcCCCccc
Q 013440 85 EGLKVLQFPGIGSS 98 (443)
Q Consensus 85 ~~L~~L~l~~~~~~ 98 (443)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=55.51 E-value=11 Score=20.45 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=7.1
Q ss_pred CCCCEEEcCCCCCC
Q 013440 130 KKLEILSLAYSNIN 143 (443)
Q Consensus 130 ~~L~~L~l~~~~~~ 143 (443)
.+|+.|+++.|.++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555444
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.21 E-value=16 Score=20.01 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=8.0
Q ss_pred CCCCEEEcCCCccc
Q 013440 85 EGLKVLQFPGIGSS 98 (443)
Q Consensus 85 ~~L~~L~l~~~~~~ 98 (443)
++|++|++++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666553
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.69 E-value=23 Score=35.34 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=20.0
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCC
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGI 95 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 95 (443)
+.+.+..+++++|....-....++....++|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 455566666666654222223334445566666666665
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=22.16 E-value=6.5 Score=39.11 Aligned_cols=185 Identities=25% Similarity=0.189 Sum_probs=116.1
Q ss_pred hccCCCCeEEeCCCCCCCCCC-----CcC-CC-CCCcEEEcccCCCC---CccCcHHHHhcCCCCCEEEcCCCcccc---
Q 013440 33 ETIQKDPIAISLPHRDIQELP-----ERL-QC-PNLQLFLLYTEGNG---PMQVSDHFFEGMEGLKVLQFPGIGSSS--- 99 (443)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~~l~-----~~~-~~-~~L~~L~l~~~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~--- 99 (443)
......+..|++.++.+...- ... .. ..+++|.+..|... ...+...+ .....++.++++.|.+..
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L-~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL-EKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH-hcccchhHHHHHhcccchhhh
Confidence 445566666777777664211 111 22 45666777666541 11223333 458999999999998731
Q ss_pred --ccccc----cCCCCCcEEEecCCCCCC--c----ccccCCCC-CCEEEcCCCCCC-----CCchhhcCC-CCCCEEec
Q 013440 100 --LPSSL----GRLINLQTLCLDWCELAD--I----AAIGQLKK-LEILSLAYSNIN-----QLPVEIGQL-TRLQLLDL 160 (443)
Q Consensus 100 --~p~~l----~~l~~L~~L~l~~~~l~~--~----~~~~~l~~-L~~L~l~~~~~~-----~lp~~~~~l-~~L~~L~l 160 (443)
++..+ ....++++|.+.+|.+.. . ..+...+. +..|++..|.+. .+...+..+ +.++++++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 23333 357889999999999766 1 44555565 777999999776 234455566 78899999
Q ss_pred cCCccccccchH---HhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCC
Q 013440 161 SNCWWLEVIAPN---VISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (443)
Q Consensus 161 ~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (443)
..|++.+..... .+..++.++++.++.|.+..... ....+.+.....+..+-+.++..
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~----~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV----ELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH----HHHHHHhhhcccchhhhccccCc
Confidence 998877654432 35667789999999988765543 12233444445555555554443
Done!