Query 013440
Match_columns 443
No_of_seqs 166 out of 2209
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 10:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 100.0 5.3E-27 1.8E-31 222.8 25.0 306 32-405 39-344 (347)
2 1o6v_A Internalin A; bacterial 100.0 5.5E-27 1.9E-31 231.6 25.5 323 35-405 44-386 (466)
3 1o6v_A Internalin A; bacterial 100.0 1.7E-26 5.9E-31 228.0 28.2 313 27-385 58-391 (466)
4 4eco_A Uncharacterized protein 100.0 2.3E-27 7.8E-32 242.8 20.6 330 52-413 198-584 (636)
5 3t6q_A CD180 antigen; protein- 100.0 4.2E-26 1.4E-30 232.9 29.2 362 34-410 30-491 (606)
6 3t6q_A CD180 antigen; protein- 100.0 2.6E-26 9E-31 234.4 27.2 357 32-411 52-516 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-26 6.1E-31 235.7 25.8 139 27-168 23-168 (606)
8 3rgz_A Protein brassinosteroid 99.9 1.3E-26 4.5E-31 242.5 25.1 352 35-413 267-723 (768)
9 3v47_A TOLL-like receptor 5B a 99.9 7E-27 2.4E-31 230.3 21.5 360 26-406 21-407 (455)
10 3rgz_A Protein brassinosteroid 99.9 7E-27 2.4E-31 244.5 22.0 350 33-413 174-557 (768)
11 4ecn_A Leucine-rich repeat pro 99.9 1.9E-26 6.5E-31 240.6 23.4 308 76-413 440-824 (876)
12 2z63_A TOLL-like receptor 4, v 99.9 3.2E-26 1.1E-30 232.1 24.1 367 27-412 19-511 (570)
13 4ecn_A Leucine-rich repeat pro 99.9 2.2E-26 7.7E-31 240.1 23.3 340 32-406 443-839 (876)
14 4eco_A Uncharacterized protein 99.9 1.9E-26 6.5E-31 236.0 21.2 340 32-406 201-599 (636)
15 3o6n_A APL1; leucine-rich repe 99.9 7.4E-26 2.5E-30 218.4 23.8 304 57-405 43-350 (390)
16 4fmz_A Internalin; leucine ric 99.9 1.9E-25 6.5E-30 212.0 25.9 287 27-378 56-343 (347)
17 2z81_A CD282 antigen, TOLL-lik 99.9 2E-26 6.7E-31 232.6 19.8 148 35-185 24-179 (549)
18 2z7x_B TOLL-like receptor 1, v 99.9 2E-25 7E-30 223.6 27.1 143 40-190 3-150 (520)
19 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-25 4.1E-30 229.5 24.6 110 33-144 52-167 (606)
20 2z81_A CD282 antigen, TOLL-lik 99.9 8.7E-26 3E-30 227.8 21.6 152 41-195 9-165 (549)
21 2id5_A Lingo-1, leucine rich r 99.9 6.8E-25 2.3E-29 217.4 25.9 314 40-381 14-333 (477)
22 3oja_B Anopheles plasmodium-re 99.9 4.6E-25 1.6E-29 224.4 23.6 304 57-405 49-356 (597)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-24 4.2E-29 219.9 25.6 148 35-190 29-181 (562)
24 2z63_A TOLL-like receptor 4, v 99.9 3.2E-25 1.1E-29 224.7 21.0 346 32-405 47-529 (570)
25 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-24 4E-29 230.0 25.6 163 26-192 15-188 (844)
26 3o6n_A APL1; leucine-rich repe 99.9 9.2E-25 3.1E-29 210.7 21.4 303 34-379 42-350 (390)
27 1ziw_A TOLL-like receptor 3; i 99.9 9.4E-24 3.2E-28 218.4 28.9 155 35-192 23-185 (680)
28 3v47_A TOLL-like receptor 5B a 99.9 2.2E-24 7.7E-29 212.3 22.7 346 40-413 13-389 (455)
29 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-24 1.1E-28 210.4 23.3 309 32-384 37-354 (457)
30 1ziw_A TOLL-like receptor 3; i 99.9 1.7E-23 5.7E-28 216.5 27.5 151 33-186 45-203 (680)
31 3oja_B Anopheles plasmodium-re 99.9 4.5E-24 1.5E-28 217.1 21.7 303 35-380 49-357 (597)
32 2id5_A Lingo-1, leucine rich r 99.9 1.1E-23 3.8E-28 208.7 23.8 295 34-351 29-331 (477)
33 3j0a_A TOLL-like receptor 5; m 99.9 3.7E-23 1.3E-27 218.5 25.4 331 40-404 7-391 (844)
34 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-22 4.6E-27 198.9 26.9 322 27-412 54-392 (457)
35 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-23 5.4E-28 209.9 20.0 339 35-406 19-480 (520)
36 4g8a_A TOLL-like receptor 4; l 99.9 8.8E-23 3E-27 209.3 25.2 131 34-166 49-186 (635)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6E-23 2E-27 207.5 20.9 352 27-405 43-508 (562)
38 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-22 5.2E-27 190.7 21.1 291 60-405 34-331 (332)
39 1xku_A Decorin; proteoglycan, 99.9 6.3E-22 2.2E-26 186.4 24.8 291 60-404 32-329 (330)
40 1jl5_A Outer protein YOPM; leu 99.9 2.9E-21 9.8E-26 189.3 26.7 303 36-405 90-407 (454)
41 1jl5_A Outer protein YOPM; leu 99.9 1.6E-21 5.4E-26 191.2 24.3 311 36-411 110-433 (454)
42 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-20 4.3E-25 193.2 31.0 149 41-193 35-188 (635)
43 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-22 6.1E-27 188.5 15.3 246 59-352 50-303 (313)
44 1xku_A Decorin; proteoglycan, 99.9 8.1E-21 2.8E-25 178.8 25.1 291 38-378 32-329 (330)
45 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-22 1.1E-26 186.8 15.1 192 37-240 50-252 (313)
46 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-21 7.6E-26 182.7 20.9 291 38-379 34-331 (332)
47 2z80_A TOLL-like receptor 2, v 99.9 6.5E-22 2.2E-26 188.1 16.7 195 35-240 29-230 (353)
48 4fcg_A Uncharacterized protein 99.9 7.3E-22 2.5E-26 185.5 16.7 90 83-172 79-169 (328)
49 1z7x_W Ribonuclease inhibitor; 99.9 1.8E-23 6.2E-28 206.2 0.7 359 33-404 24-437 (461)
50 4fcg_A Uncharacterized protein 99.9 4.5E-21 1.5E-25 180.1 17.0 219 59-321 81-311 (328)
51 3ogk_B Coronatine-insensitive 99.9 3.9E-23 1.3E-27 210.3 1.2 142 255-409 376-527 (592)
52 3ogk_B Coronatine-insensitive 99.9 9E-22 3.1E-26 200.3 11.3 351 35-404 162-548 (592)
53 2z66_A Variable lymphocyte rec 99.9 1E-20 3.6E-25 176.0 17.1 240 41-321 11-258 (306)
54 2z66_A Variable lymphocyte rec 99.9 2E-20 6.7E-25 174.2 18.4 228 34-272 25-263 (306)
55 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-20 4E-25 173.9 16.1 219 40-271 14-239 (285)
56 2z80_A TOLL-like receptor 2, v 99.8 1.7E-20 5.9E-25 178.2 15.8 260 27-322 43-312 (353)
57 3zyi_A Leucine-rich repeat-con 99.8 7.3E-20 2.5E-24 179.8 20.5 241 39-321 56-300 (452)
58 3zyj_A Leucine-rich repeat-con 99.8 7.9E-20 2.7E-24 178.9 20.6 175 39-226 45-223 (440)
59 3g06_A SSPH2 (leucine-rich rep 99.8 6.5E-19 2.2E-23 178.1 25.5 257 36-379 39-295 (622)
60 1z7x_W Ribonuclease inhibitor; 99.8 4.8E-22 1.6E-26 196.0 0.6 357 36-405 2-409 (461)
61 3o53_A Protein LRIM1, AGAP0063 99.8 8.3E-21 2.8E-25 177.6 8.7 263 39-355 12-277 (317)
62 1ozn_A Reticulon 4 receptor; N 99.8 2.4E-19 8.3E-24 165.0 17.3 218 62-322 14-236 (285)
63 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-18 6.1E-23 174.9 24.8 258 60-408 41-298 (622)
64 2p1m_B Transport inhibitor res 99.8 7.7E-22 2.6E-26 200.8 -0.0 64 339-406 455-518 (594)
65 3zyj_A Leucine-rich repeat-con 99.8 1.4E-18 4.8E-23 170.1 18.7 224 34-271 61-293 (440)
66 3zyi_A Leucine-rich repeat-con 99.8 1.4E-18 4.9E-23 170.6 18.4 223 34-270 72-303 (452)
67 1p9a_G Platelet glycoprotein I 99.8 4.2E-18 1.4E-22 156.9 19.4 184 33-229 6-191 (290)
68 2o6q_A Variable lymphocyte rec 99.8 8.5E-18 2.9E-22 153.4 20.5 197 38-269 17-217 (270)
69 3o53_A Protein LRIM1, AGAP0063 99.8 1.7E-19 5.9E-24 168.6 9.2 187 35-240 32-222 (317)
70 2p1m_B Transport inhibitor res 99.8 2.5E-20 8.6E-25 189.6 3.3 346 36-402 129-539 (594)
71 1h6u_A Internalin H; cell adhe 99.8 7.5E-18 2.6E-22 156.7 19.0 189 32-239 36-224 (308)
72 2z62_A TOLL-like receptor 4, v 99.8 1.2E-17 4.1E-22 152.9 18.0 204 60-272 29-239 (276)
73 3oja_A Leucine-rich immune mol 99.8 4E-19 1.4E-23 175.7 8.7 144 38-190 35-181 (487)
74 1wwl_A Monocyte differentiatio 99.8 2.6E-18 8.8E-23 160.2 13.2 248 34-297 40-309 (312)
75 3rfs_A Internalin B, repeat mo 99.8 2.1E-18 7.2E-23 157.5 11.9 151 35-190 39-193 (272)
76 1h6u_A Internalin H; cell adhe 99.8 1.5E-17 5.2E-22 154.6 17.4 179 43-240 25-203 (308)
77 2o6q_A Variable lymphocyte rec 99.8 2.3E-17 7.7E-22 150.5 18.2 180 34-224 34-219 (270)
78 2xwt_C Thyrotropin receptor; s 99.8 3.8E-18 1.3E-22 152.8 12.0 199 27-239 23-233 (239)
79 1wwl_A Monocyte differentiatio 99.7 3.9E-19 1.3E-23 165.8 4.9 246 57-350 41-306 (312)
80 3oja_A Leucine-rich immune mol 99.7 3.6E-18 1.2E-22 168.9 11.9 239 57-321 32-272 (487)
81 3rfs_A Internalin B, repeat mo 99.7 4.3E-17 1.5E-21 148.8 18.1 214 39-274 21-239 (272)
82 2z62_A TOLL-like receptor 4, v 99.7 2.6E-17 8.9E-22 150.6 16.4 197 35-243 26-235 (276)
83 1h6t_A Internalin B; cell adhe 99.7 5.3E-17 1.8E-21 149.6 16.4 177 32-227 41-217 (291)
84 1p9a_G Platelet glycoprotein I 99.7 1.2E-16 4E-21 147.2 17.5 170 57-240 8-180 (290)
85 2ast_B S-phase kinase-associat 99.7 3E-17 1E-21 154.7 13.3 173 36-221 46-233 (336)
86 3m19_A Variable lymphocyte rec 99.7 1.8E-16 6.1E-21 142.9 17.6 177 37-225 14-194 (251)
87 2xwt_C Thyrotropin receptor; s 99.7 1.8E-17 6.1E-22 148.4 9.8 204 49-295 23-237 (239)
88 2ast_B S-phase kinase-associat 99.7 1.5E-17 5E-22 156.8 8.3 123 60-188 48-178 (336)
89 4glp_A Monocyte differentiatio 99.7 2.8E-17 9.6E-22 153.1 9.2 225 57-297 62-307 (310)
90 1m9s_A Internalin B; cell inva 99.7 4.1E-16 1.4E-20 157.4 16.9 179 31-228 37-215 (605)
91 1h6t_A Internalin B; cell adhe 99.7 1.3E-15 4.6E-20 140.2 16.7 182 39-239 26-207 (291)
92 2ca6_A RAN GTPase-activating p 99.7 2E-17 6.9E-22 159.0 4.5 264 33-321 28-340 (386)
93 4ay9_X Follicle-stimulating ho 99.6 2.6E-15 8.9E-20 142.2 16.6 219 131-376 31-254 (350)
94 4glp_A Monocyte differentiatio 99.6 5.9E-16 2E-20 144.1 11.7 221 35-269 62-306 (310)
95 2ca6_A RAN GTPase-activating p 99.6 2.3E-17 7.8E-22 158.6 1.9 141 254-404 184-340 (386)
96 1m9s_A Internalin B; cell inva 99.6 4.1E-16 1.4E-20 157.4 10.5 184 38-240 22-205 (605)
97 3m19_A Variable lymphocyte rec 99.6 5.2E-15 1.8E-19 133.3 16.1 157 34-193 32-194 (251)
98 4ezg_A Putative uncharacterize 99.6 2.7E-15 9.2E-20 129.9 13.6 150 57-223 42-194 (197)
99 4ezg_A Putative uncharacterize 99.6 1.8E-15 6.3E-20 130.9 12.3 150 34-191 41-194 (197)
100 1xeu_A Internalin C; cellular 99.6 8.4E-16 2.9E-20 139.3 9.5 173 35-227 17-189 (263)
101 4ay9_X Follicle-stimulating ho 99.6 5.1E-15 1.7E-19 140.2 14.9 148 41-191 13-167 (350)
102 3goz_A Leucine-rich repeat-con 99.6 1.5E-15 5.2E-20 144.5 10.7 243 84-350 21-294 (362)
103 1xeu_A Internalin C; cellular 99.6 7.6E-15 2.6E-19 133.0 13.2 156 29-194 33-188 (263)
104 2o6s_A Variable lymphocyte rec 99.6 6.2E-15 2.1E-19 128.8 11.9 169 40-227 10-183 (208)
105 3e6j_A Variable lymphocyte rec 99.6 2.2E-14 7.6E-19 127.1 15.2 149 39-191 21-172 (229)
106 2v70_A SLIT-2, SLIT homolog 2 99.6 2E-14 6.7E-19 126.7 14.3 148 40-190 14-165 (220)
107 3cvr_A Invasion plasmid antige 99.6 4.2E-14 1.4E-18 141.3 18.1 186 36-271 58-244 (571)
108 2o6s_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 127.1 12.1 152 34-195 25-182 (208)
109 3goz_A Leucine-rich repeat-con 99.6 1E-15 3.6E-20 145.6 5.2 13 309-321 282-294 (362)
110 2v9t_B SLIT homolog 2 protein 99.6 3.7E-14 1.3E-18 124.9 14.0 147 40-190 14-164 (220)
111 2xot_A Amphoterin-induced prot 99.5 2.3E-14 7.7E-19 136.3 12.3 172 40-223 21-202 (361)
112 2v9t_B SLIT homolog 2 protein 99.5 7.3E-14 2.5E-18 123.0 13.4 148 62-223 14-165 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 8.1E-14 2.8E-18 122.7 13.5 149 61-223 13-166 (220)
114 3e6j_A Variable lymphocyte rec 99.5 2.4E-13 8.3E-18 120.4 14.6 150 60-224 20-173 (229)
115 2ell_A Acidic leucine-rich nuc 99.5 1.1E-13 3.9E-18 116.3 11.3 137 85-227 24-164 (168)
116 2xot_A Amphoterin-induced prot 99.5 1.3E-13 4.3E-18 131.1 12.4 161 27-191 30-202 (361)
117 3cvr_A Invasion plasmid antige 99.5 6.8E-13 2.3E-17 132.5 16.2 160 35-224 78-244 (571)
118 2ell_A Acidic leucine-rich nuc 99.5 2.4E-13 8.3E-18 114.3 9.8 107 82-190 46-159 (168)
119 1dce_A Protein (RAB geranylger 99.4 1.3E-15 4.6E-20 152.7 -5.7 180 36-228 348-551 (567)
120 2je0_A Acidic leucine-rich nuc 99.4 3.5E-13 1.2E-17 110.8 9.5 122 36-161 16-148 (149)
121 1a9n_A U2A', U2A'; complex (nu 99.4 4.6E-13 1.6E-17 113.5 9.0 102 86-189 43-151 (176)
122 2je0_A Acidic leucine-rich nuc 99.4 6.3E-13 2.2E-17 109.3 9.1 102 59-163 17-123 (149)
123 1w8a_A SLIT protein; signaling 99.4 3.3E-12 1.1E-16 109.8 12.9 128 40-170 11-143 (192)
124 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-12 5.7E-17 110.0 10.2 130 32-165 14-152 (176)
125 4b8c_D Glucose-repressible alc 99.4 1.7E-12 5.6E-17 134.3 10.5 154 37-195 173-333 (727)
126 4b8c_D Glucose-repressible alc 99.4 4.9E-13 1.7E-17 138.2 6.3 131 57-191 222-354 (727)
127 2o6r_A Variable lymphocyte rec 99.3 1.1E-11 3.8E-16 105.0 13.0 129 39-170 9-141 (177)
128 1w8a_A SLIT protein; signaling 99.3 6.4E-12 2.2E-16 108.0 11.7 122 62-189 11-137 (192)
129 2wfh_A SLIT homolog 2 protein 99.3 8.5E-12 2.9E-16 107.2 12.0 124 40-167 13-140 (193)
130 2wfh_A SLIT homolog 2 protein 99.3 2.2E-11 7.6E-16 104.6 14.3 126 61-192 12-140 (193)
131 1dce_A Protein (RAB geranylger 99.3 2E-11 6.9E-16 122.4 12.6 176 32-217 367-567 (567)
132 1ds9_A Outer arm dynein; leuci 99.2 1.4E-13 4.9E-18 119.0 -4.4 104 57-164 46-151 (198)
133 2o6r_A Variable lymphocyte rec 99.2 1.2E-10 4E-15 98.6 13.1 125 61-191 9-137 (177)
134 1ds9_A Outer arm dynein; leuci 99.2 2.1E-13 7.1E-18 118.0 -4.4 156 61-222 25-184 (198)
135 3sb4_A Hypothetical leucine ri 99.2 5.4E-11 1.8E-15 111.4 10.9 285 84-400 24-327 (329)
136 3sb4_A Hypothetical leucine ri 99.2 2E-11 7E-16 114.3 7.6 77 36-115 48-155 (329)
137 2r9u_A Variable lymphocyte rec 99.0 1E-09 3.4E-14 92.5 10.8 98 62-164 15-116 (174)
138 3g39_A Variable lymphocyte rec 99.0 1E-09 3.5E-14 92.1 10.8 101 61-166 11-115 (170)
139 2r9u_A Variable lymphocyte rec 99.0 1.4E-09 4.8E-14 91.6 11.6 106 39-147 14-122 (174)
140 3g39_A Variable lymphocyte rec 99.0 1.3E-09 4.4E-14 91.5 10.8 104 39-145 11-117 (170)
141 3un9_A NLR family member X1; l 99.0 2.1E-10 7.1E-15 108.9 4.7 161 59-224 72-253 (372)
142 3un9_A NLR family member X1; l 99.0 1.4E-10 4.7E-15 110.2 3.3 161 34-195 69-256 (372)
143 4fs7_A Uncharacterized protein 98.9 5.2E-08 1.8E-12 93.4 17.8 302 57-402 69-374 (394)
144 4fdw_A Leucine rich hypothetic 98.9 3.2E-08 1.1E-12 94.8 15.5 255 37-321 113-380 (401)
145 4fs7_A Uncharacterized protein 98.8 3.9E-07 1.3E-11 87.3 19.2 300 34-376 68-374 (394)
146 4fdw_A Leucine rich hypothetic 98.8 1.6E-07 5.5E-12 89.9 15.9 212 38-269 158-382 (401)
147 3e4g_A ATP synthase subunit S, 98.8 2.6E-09 8.8E-14 88.7 2.9 92 312-409 62-154 (176)
148 2ra8_A Uncharacterized protein 98.7 2.2E-08 7.6E-13 94.2 9.0 185 32-222 102-319 (362)
149 2ifg_A High affinity nerve gro 98.7 8E-08 2.7E-12 90.4 10.0 85 82-166 28-116 (347)
150 2ifg_A High affinity nerve gro 98.6 1.1E-07 3.7E-12 89.4 10.0 102 88-192 11-117 (347)
151 3e4g_A ATP synthase subunit S, 98.6 2.1E-08 7.3E-13 83.2 3.0 104 284-397 61-170 (176)
152 4gt6_A Cell surface protein; l 98.3 5.4E-05 1.9E-09 72.2 19.3 297 57-404 61-367 (394)
153 1io0_A Tropomodulin; LRR prote 98.3 1.1E-06 3.9E-11 74.4 6.4 111 80-190 31-163 (185)
154 4gt6_A Cell surface protein; l 98.2 0.00014 4.9E-09 69.3 21.3 143 39-187 66-214 (394)
155 2ra8_A Uncharacterized protein 98.2 1.9E-06 6.6E-11 81.0 7.9 174 33-221 135-341 (362)
156 1io0_A Tropomodulin; LRR prote 98.2 2.3E-06 7.8E-11 72.5 6.1 108 57-165 34-163 (185)
157 3rw6_A Nuclear RNA export fact 97.8 2.8E-05 9.6E-10 69.3 6.6 80 105-185 167-258 (267)
158 3rw6_A Nuclear RNA export fact 97.7 6.4E-05 2.2E-09 67.0 7.0 88 127-216 167-257 (267)
159 4h09_A Hypothetical leucine ri 97.6 0.0057 2E-07 57.6 20.2 298 57-386 44-349 (379)
160 4h09_A Hypothetical leucine ri 97.5 0.01 3.5E-07 55.9 20.1 78 81-162 42-122 (379)
161 1pgv_A TMD-1, tropomodulin TMD 95.9 0.015 5E-07 49.0 6.5 83 80-162 36-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 95.8 0.012 4.1E-07 49.5 5.6 113 105-221 38-168 (197)
163 3rfe_A Platelet glycoprotein I 93.9 0.11 3.7E-06 40.5 6.0 54 41-97 12-67 (130)
164 3rfe_A Platelet glycoprotein I 92.8 0.18 6.2E-06 39.2 5.6 53 112-166 12-68 (130)
165 2a5y_B CED-4; apoptosis; HET: 55.5 3.2 0.00011 40.9 0.8 16 1-16 456-471 (549)
166 2lz0_A Uncharacterized protein 27.6 46 0.0016 23.9 3.1 13 81-93 16-28 (100)
167 2lz0_A Uncharacterized protein 26.6 67 0.0023 23.0 3.8 37 57-96 18-54 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=5.3e-27 Score=222.77 Aligned_cols=306 Identities=16% Similarity=0.126 Sum_probs=204.4
Q ss_pred hhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440 32 EETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ 111 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~ 111 (443)
....++++++|++.++.+..++....+++|++|++++|.. ..++. +.++++|++|++++|.++.++ .+..+++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i--~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI--TDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCcc--ccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence 3445677788888887777777666777788888877764 44544 577778888888777777664 467777777
Q ss_pred EEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440 112 TLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (443)
Q Consensus 112 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (443)
+|++++|.+.....+..+++|++|++++|.....+..+..+++|+.|++++|... ..+. +..+++|++|++++|.+.
T Consensus 114 ~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 114 ELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCC
T ss_pred EEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCccc
Confidence 7777777777744477777777777777744433344777777777777775433 3332 566777777777777654
Q ss_pred cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccc
Q 013440 192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS 271 (443)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (443)
.. ..+..+++|+.|++++|.+..++. +..+++|+.|++++|.+..
T Consensus 191 ~~----------~~~~~l~~L~~L~l~~n~l~~~~~-------------------------~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 191 DI----------SPLASLTSLHYFTAYVNQITDITP-------------------------VANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp CC----------GGGGGCTTCCEEECCSSCCCCCGG-------------------------GGGCTTCCEEECCSSCCCC
T ss_pred cc----------ccccCCCccceeecccCCCCCCch-------------------------hhcCCcCCEEEccCCccCC
Confidence 32 225667777777777666654433 2556667777777765533
Q ss_pred cccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccc
Q 013440 272 ILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT 351 (443)
Q Consensus 272 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 351 (443)
... +. .+++|++|++++|.... +.. ...+++|++|++++| .++.++ ....+++|+.|++++|
T Consensus 236 ~~~----~~-~l~~L~~L~l~~n~l~~-~~~----~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L~L~~n- 297 (347)
T 4fmz_A 236 LSP----LA-NLSQLTWLEIGTNQISD-INA----VKDLTKLKMLNVGSN-QISDIS------VLNNLSQLNSLFLNNN- 297 (347)
T ss_dssp CGG----GT-TCTTCCEEECCSSCCCC-CGG----GTTCTTCCEEECCSS-CCCCCG------GGGGCTTCSEEECCSS-
T ss_pred Ccc----hh-cCCCCCEEECCCCccCC-Chh----HhcCCCcCEEEccCC-ccCCCh------hhcCCCCCCEEECcCC-
Confidence 221 22 23778888888775433 322 347889999999888 444432 4567888999999887
Q ss_pred cccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCc
Q 013440 352 NLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (443)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~ 405 (443)
.++...... ...+++|++|++++|+ ++.+++ ...+++|+.|++.+|+
T Consensus 298 ~l~~~~~~~---l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 298 QLGNEDMEV---IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp CCCGGGHHH---HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred cCCCcChhH---hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 444443221 3458899999999876 666654 4678999999998885
No 2
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=5.5e-27 Score=231.61 Aligned_cols=323 Identities=17% Similarity=0.135 Sum_probs=186.7
Q ss_pred cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEE
Q 013440 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~ 114 (443)
.+++++.|.+.++.+..++....+++|++|++++|.. ..++. +.++++|++|++++|.+..++. +..+++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCcc--CCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 3456677777766666666655667777777776664 34443 4666777777777776666555 66667777777
Q ss_pred ecCCCCCCcccccCCCCCCEEEcCCCCCCCCch--------------------hhcCCCCCCEEeccCCccccccchHHh
Q 013440 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPV--------------------EIGQLTRLQLLDLSNCWWLEVIAPNVI 174 (443)
Q Consensus 115 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~l 174 (443)
+++|.+..+..++++++|++|++++|.++.++. .+.++++|+.|++++|.+ ..++. +
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~--l 195 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV-SDISV--L 195 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC-CCCGG--G
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC-CCChh--h
Confidence 777666664346666677777776666655432 144445555555555332 22222 4
Q ss_pred hcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhc
Q 013440 175 SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLV 254 (443)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 254 (443)
..+++|++|++++|.+.... .++.+++|++|++++|.+..++....+++|+.+++..+..... ..+.
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~ 262 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDIT----------PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL---APLS 262 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCG----------GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC---GGGT
T ss_pred ccCCCCCEEEecCCcccccc----------cccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc---hhhh
Confidence 45555555555555443221 1445566666666666655544332446666666644433322 1245
Q ss_pred ccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeeccccccc
Q 013440 255 KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRV 334 (443)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 334 (443)
.+++|+.|++++|.+....+ +.. +++|+.|++++|.... ++. ...+++|++|++++| .++.+.
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~----~~~-l~~L~~L~L~~n~l~~-~~~----~~~l~~L~~L~L~~n-~l~~~~------ 325 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP----LAG-LTALTNLELNENQLED-ISP----ISNLKNLTYLTLYFN-NISDIS------ 325 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG----GTT-CTTCSEEECCSSCCSC-CGG----GGGCTTCSEEECCSS-CCSCCG------
T ss_pred cCCCCCEEECCCCccCcccc----ccC-CCccCeEEcCCCcccC-chh----hcCCCCCCEEECcCC-cCCCch------
Confidence 56666666666665533211 222 2667777776665432 221 225677777777777 333322
Q ss_pred ccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCc
Q 013440 335 RCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (443)
Q Consensus 335 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~ 405 (443)
....+++|+.|++++| .++.++ ....+++|+.|++++| .+++.++ ...+++|+.|++.+|.
T Consensus 326 ~~~~l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 326 PVSSLTKLQRLFFYNN-KVSDVS-----SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp GGGGCTTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred hhccCccCCEeECCCC-ccCCch-----hhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 2456777888888776 455442 1456788888888876 4555543 4677888888888873
No 3
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.7e-26 Score=228.03 Aligned_cols=313 Identities=15% Similarity=0.137 Sum_probs=246.0
Q ss_pred hhhhhhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccC
Q 013440 27 LEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR 106 (443)
Q Consensus 27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~ 106 (443)
+...+....++++++|++++|.+..+++...+++|++|++++|.. ..++. +.++++|++|++++|.++.++. +..
T Consensus 58 i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~ 132 (466)
T 1o6v_A 58 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI--ADITP--LANLTNLTGLTLFNNQITDIDP-LKN 132 (466)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred CccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcc--ccChh--hcCCCCCCEEECCCCCCCCChH-HcC
Confidence 445566778899999999999998888866999999999999986 45554 6889999999999999888765 788
Q ss_pred CCCCcEEEecCCCCCCc---------------------ccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCcc
Q 013440 107 LINLQTLCLDWCELADI---------------------AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWW 165 (443)
Q Consensus 107 l~~L~~L~l~~~~l~~~---------------------~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 165 (443)
+++|++|++++|.+..+ ..++++++|++|++++|.++.++ .+.++++|+.|++++|.+
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI 211 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcc
Confidence 89999999988876552 23567788999999999888775 488999999999999765
Q ss_pred ccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCC
Q 013440 166 LEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGP 245 (443)
Q Consensus 166 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 245 (443)
.+..+ ++.+++|++|++++|.+... ..++.+++|++|++++|.+..++....+++|+.+++..+...
T Consensus 212 ~~~~~---~~~l~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 212 SDITP---LGILTNLDELSLNGNQLKDI----------GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 278 (466)
T ss_dssp CCCGG---GGGCTTCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC
T ss_pred ccccc---ccccCCCCEEECCCCCcccc----------hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccC
Confidence 55444 57899999999999987542 457789999999999999987766446799999999766554
Q ss_pred CCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCce
Q 013440 246 EDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEIL 325 (443)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 325 (443)
.. +.+..+++|+.|++++|.+....+ +. .+++|+.|++++|......+ ...+++|++|++++| .++
T Consensus 279 ~~---~~~~~l~~L~~L~L~~n~l~~~~~----~~-~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n-~l~ 344 (466)
T 1o6v_A 279 NI---SPLAGLTALTNLELNENQLEDISP----IS-NLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNN-KVS 344 (466)
T ss_dssp CC---GGGTTCTTCSEEECCSSCCSCCGG----GG-GCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSS-CCC
T ss_pred cc---ccccCCCccCeEEcCCCcccCchh----hc-CCCCCCEEECcCCcCCCchh-----hccCccCCEeECCCC-ccC
Confidence 43 236789999999999987754322 33 34899999999997554332 237899999999999 454
Q ss_pred eecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCccccc
Q 013440 326 HIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLF 385 (443)
Q Consensus 326 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 385 (443)
.+. ....+++|+.|++++| .++++.. ...+++|++|++++| .++.+|
T Consensus 345 ~~~------~l~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~l~~n-~~~~~p 391 (466)
T 1o6v_A 345 DVS------SLANLTNINWLSAGHN-QISDLTP-----LANLTRITQLGLNDQ-AWTNAP 391 (466)
T ss_dssp CCG------GGTTCTTCCEEECCSS-CCCBCGG-----GTTCTTCCEEECCCE-EEECCC
T ss_pred Cch------hhccCCCCCEEeCCCC-ccCccch-----hhcCCCCCEEeccCC-cccCCc
Confidence 432 5678999999999987 4554432 467899999999986 455554
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.3e-27 Score=242.80 Aligned_cols=330 Identities=11% Similarity=0.093 Sum_probs=236.2
Q ss_pred CCCcC-CCCCCcEEEcccCCCCCcc-----------------CcHHHHh--cCCCCCEEEcCCCcccc-ccccccCCCCC
Q 013440 52 LPERL-QCPNLQLFLLYTEGNGPMQ-----------------VSDHFFE--GMEGLKVLQFPGIGSSS-LPSSLGRLINL 110 (443)
Q Consensus 52 l~~~~-~~~~L~~L~l~~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~-~p~~l~~l~~L 110 (443)
+|... ++++|++|++++|.+ ... +|..+ . ++++|++|++++|.+.. +|..++.+++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPF-VAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred CCHHHhcccCCCEEECcCCcc-ccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 44433 788999999999886 442 67664 5 78999999999988654 88888899999
Q ss_pred cEEEecCCC-CCC---cccccCC------CCCCEEEcCCCCCCCCch--hhcCCCCCCEEeccCCccccccchHHhhcCC
Q 013440 111 QTLCLDWCE-LAD---IAAIGQL------KKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178 (443)
Q Consensus 111 ~~L~l~~~~-l~~---~~~~~~l------~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 178 (443)
++|++++|. ++. |..++.+ ++|++|++++|.++.+|. .++++++|+.|++++|.+.+.+| . ++.++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCC
Confidence 999999987 763 4555554 889999999998888888 88999999999999877776888 3 78888
Q ss_pred CCcEEEccCCCCCcccccCCCchhhhhccCCCC-CCEEEeecCCCCCCCCcccc---ccCcEEEEEecCCCCCCCCchhc
Q 013440 179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTE-LTTLEIEVPDAEILPPDFVS---VELQRYKIRIGDGPEDEFDPLLV 254 (443)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~~~~~~~ 254 (443)
+|+.|++++|.+.. .+ ..++.+++ |++|++++|.+..+|..+.. ++|+.+++..+...... ...+.
T Consensus 354 ~L~~L~L~~N~l~~-lp--------~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~ 423 (636)
T 4eco_A 354 KLASLNLAYNQITE-IP--------ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD-GKNFD 423 (636)
T ss_dssp EESEEECCSSEEEE-CC--------TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTT-TCSSC
T ss_pred CCCEEECCCCcccc-cc--------HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcc-hhhhc
Confidence 99999998887762 22 56788888 99999999999888876532 47888888655443321 11122
Q ss_pred -------ccccceeEEEcCccccccccccchhhHhhcccceeeccccCCcccccccccc-----CCCCCCccEEEEeccc
Q 013440 255 -------KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDD-----GEGFPRLKRLLVTDCS 322 (443)
Q Consensus 255 -------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~ 322 (443)
.+++|+.|++++|.+. ..+..+...+++|+.|++++|... .++..... ...+++|++|++++|
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~---~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N- 498 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQIS---KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN- 498 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCC---SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS-
T ss_pred ccccccccCCCCCEEECcCCccC---cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC-
Confidence 5668999999998775 234444444588999999988765 44332210 012338999999988
Q ss_pred Cceeeccccccccc--CccCcccceeccccccccccccccccccccccccceeeeccCc------CcccccChhhhhccc
Q 013440 323 EILHIVGSVRRVRC--EVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR------KLKYLFSFSMAKNLL 394 (443)
Q Consensus 323 ~l~~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~------~l~~~~~~~~~~~~~ 394 (443)
.++.++ ... ..+++|+.|+++++ .++.++.. ...+++|++|+++++. -...+| ..+..++
T Consensus 499 ~l~~lp-----~~~~~~~l~~L~~L~Ls~N-~l~~ip~~----~~~l~~L~~L~Ls~N~~ls~N~l~~~~p--~~l~~l~ 566 (636)
T 4eco_A 499 KLTKLS-----DDFRATTLPYLVGIDLSYN-SFSKFPTQ----PLNSSTLKGFGIRNQRDAQGNRTLREWP--EGITLCP 566 (636)
T ss_dssp CCCBCC-----GGGSTTTCTTCCEEECCSS-CCSSCCCG----GGGCSSCCEEECCSCBCTTCCBCCCCCC--TTGGGCS
T ss_pred cCCccC-----hhhhhccCCCcCEEECCCC-CCCCcChh----hhcCCCCCEEECCCCcccccCcccccCh--HHHhcCC
Confidence 454443 123 37889999999885 56665543 3568889999886432 233444 3356788
Q ss_pred ccceeeeccCccccccccC
Q 013440 395 RLQKVKVEDCDDLKMIIGP 413 (443)
Q Consensus 395 ~L~~L~i~~C~~l~~~~~~ 413 (443)
+|+.|++++|.- +.++..
T Consensus 567 ~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 567 SLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp SCCEEECCSSCC-CBCCSC
T ss_pred CCCEEECCCCcC-CccCHh
Confidence 899999988854 666554
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=4.2e-26 Score=232.89 Aligned_cols=362 Identities=15% Similarity=0.095 Sum_probs=225.7
Q ss_pred ccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCC
Q 013440 34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINL 110 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L 110 (443)
.....+++|++++|.+..+++ ..++++|++|++++|.. ..+....|.++++|++|++++|.+..+ |..++.+++|
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc--ceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 356789999999999977754 33899999999999986 444444468999999999999999874 6789999999
Q ss_pred cEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCc-hhhcCCCCCCEEeccCCccccccchHHhhcCCCCc--EEEc
Q 013440 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE--ELYM 185 (443)
Q Consensus 111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--~L~l 185 (443)
++|++++|.+.. +..++++++|++|++++|.++.++ ..+..+++|+.|++++|.+....+. .++.+++|+ .|++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE-DMSSLQQATNLSLNL 186 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH-HHHTTTTCCSEEEEC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh-hhhhhcccceeEEec
Confidence 999999999888 577899999999999999998653 3445599999999999765544444 478888888 7888
Q ss_pred cCCCCCcccccCCCc-----------------------------------------------------------------
Q 013440 186 GNGFSGWEKVEGGSN----------------------------------------------------------------- 200 (443)
Q Consensus 186 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 200 (443)
++|.+....+.....
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 887665443321100
Q ss_pred --hhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccc
Q 013440 201 --ASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEND 277 (443)
Q Consensus 201 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 277 (443)
.....++.+++|++|++++|.+..+|..+ .+++|+.+++..+...... ...+..+++|+.|++++|.....++. .
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-~ 344 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGT-G 344 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCS-S
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccch-h
Confidence 00122566788888888888888777765 4578888887544433211 12345666677777776654333221 1
Q ss_pred hhhHhhcccceeeccccCCcccc--ccccccCCCCCCccEEEEecccCceeeccc---------------------cccc
Q 013440 278 GTKMLLQRTEDLWLETLEGVQSV--VHELDDGEGFPRLKRLLVTDCSEILHIVGS---------------------VRRV 334 (443)
Q Consensus 278 ~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---------------------~~~~ 334 (443)
.+.. +++|++|++++|...... +.. ...+++|++|++++|. ++.+... ....
T Consensus 345 ~~~~-l~~L~~L~l~~n~l~~~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 345 CLEN-LENLRELDLSHDDIETSDCCNLQ---LRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp TTTT-CTTCCEEECCSSCCCEEEESTTT---TTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred hhhc-cCcCCEEECCCCccccccCcchh---cccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 1222 256666666665543322 111 2255666666666552 2222100 0000
Q ss_pred ccCccCcccceeccccccccccccccccccccccccceeeeccCcCccc-ccChhhhhcccccceeeeccCcccccc
Q 013440 335 RCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKY-LFSFSMAKNLLRLQKVKVEDCDDLKMI 410 (443)
Q Consensus 335 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~-~~~~~~~~~~~~L~~L~i~~C~~l~~~ 410 (443)
....+++|+.|+++++ .++...... ...+++|++|++++|.--.. ++.......+++|+.|++++| .++.+
T Consensus 420 ~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 491 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHS-LLDISSEQL---FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSI 491 (606)
T ss_dssp TTTTCTTCCEEECTTC-CCBTTCTTT---TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEE
T ss_pred hhhCcccCCEEECCCC-ccCCcCHHH---HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCcc
Confidence 1233445555555543 222221111 23456666666666532221 122123456677777777666 34444
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=2.6e-26 Score=234.39 Aligned_cols=357 Identities=17% Similarity=0.081 Sum_probs=220.7
Q ss_pred hhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCC
Q 013440 32 EETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLI 108 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~ 108 (443)
....++++++|++++|.+..+.+ +.++++|++|++++|.. ..+++..|.++++|++|++++|.++.+ +..++.++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL--IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc--cccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 45677899999999998866643 33899999999999986 344444468899999999999998885 56788899
Q ss_pred CCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCC--EEeccCCccccc---------------
Q 013440 109 NLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQ--LLDLSNCWWLEV--------------- 168 (443)
Q Consensus 109 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~--~L~l~~~~~~~~--------------- 168 (443)
+|++|++++|.+.. ++.+..+++|++|++++|.++.+ |..++.+++|+ .|++++|.+.+.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 99999999998876 35555688888888888888755 44567777777 666665433221
Q ss_pred -----------------------------------------------------------cchHHhhcCCCCcEEEccCCC
Q 013440 169 -----------------------------------------------------------IAPNVISKLSQLEELYMGNGF 189 (443)
Q Consensus 169 -----------------------------------------------------------~~~~~l~~l~~L~~L~l~~~~ 189 (443)
++...++.+++|++|++++|.
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 122224556677777777766
Q ss_pred CCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCC-cc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP-DF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (443)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (443)
+...+ ..++.+++|++|++++|.+..++. .+ .+++|+.+++..+..........+..+++|+.|++++|
T Consensus 290 l~~lp---------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 290 LSELP---------SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp CSCCC---------SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred cCCCC---------hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 55322 345666667777777666654432 22 33566666554332221111111234444444444444
Q ss_pred cccccccc------------------------cchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccC
Q 013440 268 KKVSILQE------------------------NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSE 323 (443)
Q Consensus 268 ~~~~~~~~------------------------~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 323 (443)
.+...... +..+..+ ++|+.|++++|......+... ...+++|++|++++|.
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~- 436 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSP--FQNLHLLKVLNLSHSL- 436 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECCTTCCT--TTTCTTCCEEECTTCC-
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCcccchh--hhCcccCCEEECCCCc-
Confidence 43222111 1122222 555566665554332222110 2356777777777773
Q ss_pred ceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeecc
Q 013440 324 ILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED 403 (443)
Q Consensus 324 l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~ 403 (443)
++... ......+++|++|+++++. ++............+++|++|++++| .++.+++ ..+..+++|+.|++++
T Consensus 437 l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 437 LDISS----EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSH 509 (606)
T ss_dssp CBTTC----TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCS
T ss_pred cCCcC----HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccCccCh-hhhccccCCCEEECCC
Confidence 22211 1245678999999999974 44321111111467899999999997 5666654 3457899999999999
Q ss_pred Cccccccc
Q 013440 404 CDDLKMII 411 (443)
Q Consensus 404 C~~l~~~~ 411 (443)
+ +++.++
T Consensus 510 N-~l~~~~ 516 (606)
T 3t6q_A 510 N-RLTSSS 516 (606)
T ss_dssp S-CCCGGG
T ss_pred C-ccCcCC
Confidence 8 454443
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.8e-26 Score=235.65 Aligned_cols=139 Identities=27% Similarity=0.307 Sum_probs=117.8
Q ss_pred hhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-ccc
Q 013440 27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSS 103 (443)
Q Consensus 27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~ 103 (443)
+...+. ...+++++|+++++.+..+++ ..++++|++|++++|.. ..++...|.++++|++|++++|.++.+ |..
T Consensus 23 l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 23 LSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp CSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred cccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 444443 456899999999999977775 33899999999999986 555555568999999999999999886 788
Q ss_pred ccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC--CCchhhcCCCCCCEEeccCCccccc
Q 013440 104 LGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEV 168 (443)
Q Consensus 104 l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~ 168 (443)
++.+++|++|++++|.+.. +..++++++|++|++++|.++ .+|..++++++|++|++++|.+.+.
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 9999999999999999887 377999999999999999987 5789999999999999999765443
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.3e-26 Score=242.49 Aligned_cols=352 Identities=18% Similarity=0.120 Sum_probs=193.0
Q ss_pred cCCCCeEEeCCCCCCC-CCCCcC-C-CCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccc-ccccc-ccCCCC
Q 013440 35 IQKDPIAISLPHRDIQ-ELPERL-Q-CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSS-LGRLIN 109 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~-~l~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~p~~-l~~l~~ 109 (443)
.++++++|++.+|.+. .+|... . +++|+.|++++|.. ...+|.. +.++++|++|++++|.+. .+|.. +..+++
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l-~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~ 344 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-YGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRG 344 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE-EECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTT
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC-CCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCC
Confidence 4455666666655552 444333 2 35555555555543 2233332 244555555555555444 34433 444444
Q ss_pred CcEEEecCCCC-------------------------CC--cccccC--CCCCCEEEcCCCCCC-CCchhhcCCCCCCEEe
Q 013440 110 LQTLCLDWCEL-------------------------AD--IAAIGQ--LKKLEILSLAYSNIN-QLPVEIGQLTRLQLLD 159 (443)
Q Consensus 110 L~~L~l~~~~l-------------------------~~--~~~~~~--l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~ 159 (443)
|++|++++|.+ .. +..+.. +++|++|++++|.++ .+|..+.++++|+.|+
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence 44444444443 32 222222 455666666666555 4555666666666666
Q ss_pred ccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCC-CCCCcc-ccccCcEE
Q 013440 160 LSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDF-VSVELQRY 237 (443)
Q Consensus 160 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l 237 (443)
+++|.+.+.+|.. +..+++|+.|++++|.+....+ ..++.+++|++|++++|.+. .+|..+ .+++|+.+
T Consensus 425 Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 425 LSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIP--------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp CCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CcCCcccCcccHH-HhcCCCCCEEECCCCcccCcCC--------HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 6666555555554 5666666666666666554433 55666667777777766664 444444 44667776
Q ss_pred EEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccc------------
Q 013440 238 KIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELD------------ 305 (443)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~------------ 305 (443)
++..+..... .+..+..+++|+.|++++|.+.+.+ +..+..+ ++|+.|++++|.....++..+.
T Consensus 496 ~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 496 SLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNI--PAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp ECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred EccCCccCCc-CChHHhcCCCCCEEECCCCcccCcC--CHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 6654433221 1233456667777777776664443 2333333 6677777666543322221110
Q ss_pred -------------------------------------------------------cCCCCCCccEEEEecccCceeeccc
Q 013440 306 -------------------------------------------------------DGEGFPRLKRLLVTDCSEILHIVGS 330 (443)
Q Consensus 306 -------------------------------------------------------~~~~l~~L~~L~l~~~~~l~~~~~~ 330 (443)
..+.+++|++|+++++.--..++
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip-- 649 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-- 649 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC--
T ss_pred cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC--
Confidence 01235667777777774222222
Q ss_pred ccccccCccCcccceecccccccc-ccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCccccc
Q 013440 331 VRRVRCEVFPLLEALSLMFLTNLE-TICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM 409 (443)
Q Consensus 331 ~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~ 409 (443)
...+.++.|+.|+++++ .++ .+|.. .+.+++|+.|+++++.--..+| ....++++|+.|+++++.--..
T Consensus 650 ---~~l~~l~~L~~L~Ls~N-~l~g~ip~~----l~~L~~L~~LdLs~N~l~g~ip--~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 650 ---KEIGSMPYLFILNLGHN-DISGSIPDE----VGDLRGLNILDLSSNKLDGRIP--QAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp ---GGGGGCTTCCEEECCSS-CCCSCCCGG----GGGCTTCCEEECCSSCCEECCC--GGGGGCCCCSEEECCSSEEEEE
T ss_pred ---HHHhccccCCEEeCcCC-ccCCCCChH----HhCCCCCCEEECCCCcccCcCC--hHHhCCCCCCEEECcCCccccc
Confidence 24566778888888875 343 34432 4567888888888854444554 3457788888888888865555
Q ss_pred cccC
Q 013440 410 IIGP 413 (443)
Q Consensus 410 ~~~~ 413 (443)
+|..
T Consensus 720 iP~~ 723 (768)
T 3rgz_A 720 IPEM 723 (768)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 5543
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=7e-27 Score=230.28 Aligned_cols=360 Identities=18% Similarity=0.167 Sum_probs=259.0
Q ss_pred hhhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cc
Q 013440 26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PS 102 (443)
Q Consensus 26 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~ 102 (443)
++...+. ..+++++|+++++.++.+++ ..++++|++|++++|.. ...++...|.++++|++|++++|.++.+ |.
T Consensus 21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChh
Confidence 3455555 55889999999999977643 33899999999999986 4566666678999999999999999875 78
Q ss_pred cccCCCCCcEEEecCCCCCC--ccc--ccCCCCCCEEEcCCCCCCCC-chh-hcCCCCCCEEeccCCccccccchHHhhc
Q 013440 103 SLGRLINLQTLCLDWCELAD--IAA--IGQLKKLEILSLAYSNINQL-PVE-IGQLTRLQLLDLSNCWWLEVIAPNVISK 176 (443)
Q Consensus 103 ~l~~l~~L~~L~l~~~~l~~--~~~--~~~l~~L~~L~l~~~~~~~l-p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 176 (443)
.++.+++|++|++++|.+.. +.. ++.+++|++|++++|.++.+ |.. +.++++|+.|++++|.+....+.. +..
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~ 176 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLN 176 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhc
Confidence 89999999999999999987 444 88999999999999999866 554 789999999999997766555543 455
Q ss_pred C--CCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCC-CCCcc----ccccCcEEEEEecCCCCC--
Q 013440 177 L--SQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEI-LPPDF----VSVELQRYKIRIGDGPED-- 247 (443)
Q Consensus 177 l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~----~~~~L~~l~l~~~~~~~~-- 247 (443)
+ .+|+.++++.|.+...............+..+++|++|++++|.+.. .+..+ ..++|+.+++..+.....
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence 4 68899999988876554321111222234566889999999998743 22222 126777777643211110
Q ss_pred -------CCCchhc--ccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEE
Q 013440 248 -------EFDPLLV--KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLV 318 (443)
Q Consensus 248 -------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l 318 (443)
.....+. ..++|+.|++++|.+.... +..+..+ ++|++|++++|......+..+. .+++|++|++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L 330 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL--KSVFSHF-TDLEQLTLAQNEINKIDDNAFW---GLTHLLKLNL 330 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC--TTTTTTC-TTCCEEECTTSCCCEECTTTTT---TCTTCCEEEC
T ss_pred chhhhccCcccccccccccCceEEEecCccccccc--hhhcccC-CCCCEEECCCCcccccChhHhc---CcccCCEEEC
Confidence 0000111 2368999999998775443 2334433 8999999999877655454444 7899999999
Q ss_pred ecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccce
Q 013440 319 TDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQK 398 (443)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~ 398 (443)
++| .++.+. ......+++|+.|+++++ .++.+.... ...+++|++|++++ ..++.+++. ....+++|+.
T Consensus 331 s~N-~l~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~ 399 (455)
T 3v47_A 331 SQN-FLGSID----SRMFENLDKLEVLDLSYN-HIRALGDQS---FLGLPNLKELALDT-NQLKSVPDG-IFDRLTSLQK 399 (455)
T ss_dssp CSS-CCCEEC----GGGGTTCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCS-SCCSCCCTT-TTTTCTTCCE
T ss_pred CCC-ccCCcC----hhHhcCcccCCEEECCCC-cccccChhh---ccccccccEEECCC-CccccCCHh-HhccCCcccE
Confidence 998 444442 124567899999999986 566663322 35689999999988 467777653 4578899999
Q ss_pred eeeccCcc
Q 013440 399 VKVEDCDD 406 (443)
Q Consensus 399 L~i~~C~~ 406 (443)
|++++++-
T Consensus 400 L~l~~N~l 407 (455)
T 3v47_A 400 IWLHTNPW 407 (455)
T ss_dssp EECCSSCB
T ss_pred EEccCCCc
Confidence 99987643
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=7e-27 Score=244.52 Aligned_cols=350 Identities=17% Similarity=0.111 Sum_probs=201.8
Q ss_pred hccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-ccccccCCCCCc
Q 013440 33 ETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQ 111 (443)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p~~l~~l~~L~ 111 (443)
...++++++|++++|.+....+...+++|++|++++|.. ...++. +.++++|++|++++|.++. +|..++.+++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF-STGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCC-CSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcC-CCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence 445566666666666664444445666666666666665 333333 4566666666666666653 555666666666
Q ss_pred EEEecCCCCCC-cccccCCCCCCEEEcCCCCCC-CCchhhcCC-CCCCEEeccCCccccccchHHhhcCCCCcEEEccCC
Q 013440 112 TLCLDWCELAD-IAAIGQLKKLEILSLAYSNIN-QLPVEIGQL-TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG 188 (443)
Q Consensus 112 ~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 188 (443)
+|++++|.+.. ++.. .+++|++|++++|.++ .+|..+... ++|+.|++++|.+.+.+|.. ++.+++|++|++++|
T Consensus 251 ~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 251 LLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSN 328 (768)
T ss_dssp EEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSS
T ss_pred EEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCC
Confidence 66666666544 2222 5555666666655555 455554443 55555555555544444443 455555555555555
Q ss_pred CCCcccccCCCchhhhhccCCCCCCEEEeecCCCC-CCCCcc-c---------------------------cccCcEEEE
Q 013440 189 FSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDF-V---------------------------SVELQRYKI 239 (443)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~---------------------------~~~L~~l~l 239 (443)
.+....+ ...++.+++|++|++++|.+. .+|..+ . .++|+.+++
T Consensus 329 ~l~~~ip-------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 329 NFSGELP-------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEEEECC-------HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred cccCcCC-------HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 4432222 022445555555555555442 344333 1 234444444
Q ss_pred EecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEe
Q 013440 240 RIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVT 319 (443)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 319 (443)
..+.... .....+..+++|+.|++++|.+.+.. +..+..+ ++|+.|++++|.....++..+. .+++|++|+++
T Consensus 402 ~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~ 474 (768)
T 3rgz_A 402 QNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTI--PSSLGSL-SKLRDLKLWLNMLEGEIPQELM---YVKTLETLILD 474 (768)
T ss_dssp CSSEEEE-ECCGGGGGCTTCCEEECCSSEEESCC--CGGGGGC-TTCCEEECCSSCCCSCCCGGGG---GCTTCCEEECC
T ss_pred CCCcccc-ccCHHHhcCCCCCEEECcCCcccCcc--cHHHhcC-CCCCEEECCCCcccCcCCHHHc---CCCCceEEEec
Confidence 2221110 11133466777777777777664433 2334433 7788888887776655555554 67888888888
Q ss_pred cccCceeecccccccccCccCcccceecccccccc-ccccccccccccccccceeeeccCcCcccccChhhhhcccccce
Q 013440 320 DCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE-TICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQK 398 (443)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~ 398 (443)
+|.--..++ .....+++|+.|+++++. ++ .++.. .+.+++|++|++++|.-...+| ..+..+++|+.
T Consensus 475 ~N~l~~~~p-----~~l~~l~~L~~L~L~~N~-l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~ 542 (768)
T 3rgz_A 475 FNDLTGEIP-----SGLSNCTNLNWISLSNNR-LTGEIPKW----IGRLENLAILKLSNNSFSGNIP--AELGDCRSLIW 542 (768)
T ss_dssp SSCCCSCCC-----GGGGGCTTCCEEECCSSC-CCSCCCGG----GGGCTTCCEEECCSSCCEEECC--GGGGGCTTCCE
T ss_pred CCcccCcCC-----HHHhcCCCCCEEEccCCc-cCCcCChH----HhcCCCCCEEECCCCcccCcCC--HHHcCCCCCCE
Confidence 874322222 245677888899998864 43 33332 3568899999999875554555 34578899999
Q ss_pred eeeccCccccccccC
Q 013440 399 VKVEDCDDLKMIIGP 413 (443)
Q Consensus 399 L~i~~C~~l~~~~~~ 413 (443)
|++.+|.--..+|..
T Consensus 543 L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAA 557 (768)
T ss_dssp EECCSSEEESBCCGG
T ss_pred EECCCCccCCcCChH
Confidence 999988655555543
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.9e-26 Score=240.64 Aligned_cols=308 Identities=13% Similarity=0.088 Sum_probs=187.0
Q ss_pred CcHHHHhcCCCCCEEEcCCCcccc------------------cccccc--CCCCCcEEEecCCCCCC--cccccCCCCCC
Q 013440 76 VSDHFFEGMEGLKVLQFPGIGSSS------------------LPSSLG--RLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (443)
Q Consensus 76 ~~~~~~~~l~~L~~L~l~~~~~~~------------------~p~~l~--~l~~L~~L~l~~~~l~~--~~~~~~l~~L~ 133 (443)
+|.. +.++++|++|++++|.++. +|+.++ .+++|++|++++|.+.. |..++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 4554 4678888888888888776 777776 78888888888887555 56777788888
Q ss_pred EEEcCCCC-CCC--CchhhcCCC-------CCCEEeccCCccccccch-HHhhcCCCCcEEEccCCCCCcccccCCCchh
Q 013440 134 ILSLAYSN-INQ--LPVEIGQLT-------RLQLLDLSNCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNAS 202 (443)
Q Consensus 134 ~L~l~~~~-~~~--lp~~~~~l~-------~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 202 (443)
+|++++|. ++. +|..+++++ +|+.|++++|.+. .+|. ..++.+++|+.|++++|.+...
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l--------- 588 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHL--------- 588 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBC---------
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccc---------
Confidence 88888876 663 666555444 7777777776554 6665 2267777777777777765421
Q ss_pred hhhccCCCCCCEEEeecCCCCCCCCcc-cccc-CcEEEE-------------------------EecCCCCCCC--Cchh
Q 013440 203 LVELERLTELTTLEIEVPDAEILPPDF-VSVE-LQRYKI-------------------------RIGDGPEDEF--DPLL 253 (443)
Q Consensus 203 ~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~l~l-------------------------~~~~~~~~~~--~~~~ 253 (443)
..++.+++|+.|++++|.+..+|..+ .+++ |+.|++ ..+....... ...+
T Consensus 589 -p~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 589 -EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp -CCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred -hhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 13444445555555555544444433 2233 444444 3322211100 0001
Q ss_pred c--ccccceeEEEcCccccccccccchhhHhhcccceeeccccCCcccccccccc-----CCCCCCccEEEEecccCcee
Q 013440 254 V--KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDD-----GEGFPRLKRLLVTDCSEILH 326 (443)
Q Consensus 254 ~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~ 326 (443)
. .+++|+.|++++|.+. ..+..+...+++|+.|+|++|... .++..... ...|++|++|+|++| .++.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~---~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~ 742 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQ---KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTS 742 (876)
T ss_dssp TTCCCCCEEEEECCSSCCC---SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCC
T ss_pred ccccCCCcCEEEccCCcCC---ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC-CCcc
Confidence 1 2236666777766553 233344434478888888877554 34332220 012348888888888 4554
Q ss_pred eccccccccc--CccCcccceeccccccccccccccccccccccccceeeeccCc------CcccccChhhhhcccccce
Q 013440 327 IVGSVRRVRC--EVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR------KLKYLFSFSMAKNLLRLQK 398 (443)
Q Consensus 327 ~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~------~l~~~~~~~~~~~~~~L~~ 398 (443)
++ ... ..+++|+.|+++++ .++.++.. ...+++|+.|++++++ -...+| ..+.++++|+.
T Consensus 743 lp-----~~l~~~~l~~L~~L~Ls~N-~L~~lp~~----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip--~~l~~L~~L~~ 810 (876)
T 4ecn_A 743 LS-----DDFRATTLPYLSNMDVSYN-CFSSFPTQ----PLNSSQLKAFGIRHQRDAEGNRILRQWP--TGITTCPSLIQ 810 (876)
T ss_dssp CC-----GGGSTTTCTTCCEEECCSS-CCSSCCCG----GGGCTTCCEEECCCCBCTTCCBCCCCCC--TTGGGCSSCCE
T ss_pred ch-----HHhhhccCCCcCEEEeCCC-CCCccchh----hhcCCCCCEEECCCCCCcccccccccCh--HHHhcCCCCCE
Confidence 43 122 37888999998885 56665443 3568889999887633 233343 33567889999
Q ss_pred eeeccCccccccccC
Q 013440 399 VKVEDCDDLKMIIGP 413 (443)
Q Consensus 399 L~i~~C~~l~~~~~~ 413 (443)
|++++|.- ..++..
T Consensus 811 L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 811 LQIGSNDI-RKVDEK 824 (876)
T ss_dssp EECCSSCC-CBCCSC
T ss_pred EECCCCCC-CccCHh
Confidence 99988854 766655
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=3.2e-26 Score=232.05 Aligned_cols=367 Identities=17% Similarity=0.093 Sum_probs=224.5
Q ss_pred hhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-cc
Q 013440 27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SS 103 (443)
Q Consensus 27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~ 103 (443)
+.+.+. ...+.+++|+++++.++.+++ ..++++|++|++++|.. ..++...|.++++|++|++++|.++.++ ..
T Consensus 19 l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 19 FYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp CSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 344443 356789999999999977764 34899999999999985 5666666789999999999999998865 67
Q ss_pred ccCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCCC--CchhhcCCCCCCEEeccCCccccccchHHhhcCCC
Q 013440 104 LGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179 (443)
Q Consensus 104 l~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 179 (443)
++.+++|++|++++|.+.. + ..++++++|++|++++|.++. +|..++++++|++|++++|.+....+. .++.+++
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 174 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQ 174 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG-GGHHHHT
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH-Hccchhc
Confidence 9999999999999999888 3 468999999999999998884 788999999999999999765443333 2556666
Q ss_pred C----cEEEccCCCCCcccccCC---------------------------------------------------------
Q 013440 180 L----EELYMGNGFSGWEKVEGG--------------------------------------------------------- 198 (443)
Q Consensus 180 L----~~L~l~~~~~~~~~~~~~--------------------------------------------------------- 198 (443)
| +.+++++|.+....+...
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred cchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 6 667776665443322110
Q ss_pred ----------------CchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCC-------------
Q 013440 199 ----------------SNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEF------------- 249 (443)
Q Consensus 199 ----------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~------------- 249 (443)
....+..++.+++|++|++.+|.+..+|..+...+|+.+++..+.......
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~ 334 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEES
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcC
Confidence 001112345567777888877777666655421155555554333221110
Q ss_pred -----CchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccc-------------------
Q 013440 250 -----DPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELD------------------- 305 (443)
Q Consensus 250 -----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~------------------- 305 (443)
......+++|+.|++++|.+......+..+..+ ++|++|++++|........ +.
T Consensus 335 n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp CBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC-SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred CccccccccccCCCCCEEeCcCCccCcccccccccccc-CccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence 000034556666666665543222112222222 5556665555432221111 11
Q ss_pred ---cCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccc--ccccccccccccccccceeeeccCcC
Q 013440 306 ---DGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE--TICYSQLREDQSFSNLRIINVDSCRK 380 (443)
Q Consensus 306 ---~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~L~~L~i~~c~~ 380 (443)
....+++|++|++++|. ++... ......+++|+.|++++|. ++ .++.. ...+++|++|++++| .
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~p~~----~~~l~~L~~L~l~~n-~ 481 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTH-TRVAF----NGIFNGLSSLEVLKMAGNS-FQENFLPDI----FTELRNLTFLDLSQC-Q 481 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSC-CEECC----TTTTTTCTTCCEEECTTCE-EGGGEECSC----CTTCTTCCEEECTTS-C
T ss_pred chhhhhcCCCCCEEeCcCCc-ccccc----hhhhhcCCcCcEEECcCCc-Cccccchhh----hhcccCCCEEECCCC-c
Confidence 01234444444444442 11110 1123445666666666653 22 12211 345777777777775 4
Q ss_pred cccccChhhhhcccccceeeeccCcccccccc
Q 013440 381 LKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412 (443)
Q Consensus 381 l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~ 412 (443)
++.+++ ..+..+++|+.|++++| +++.++.
T Consensus 482 l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~ 511 (570)
T 2z63_A 482 LEQLSP-TAFNSLSSLQVLNMASN-QLKSVPD 511 (570)
T ss_dssp CCEECT-TTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred cccCCh-hhhhcccCCCEEeCCCC-cCCCCCH
Confidence 555533 23456778888888777 4555544
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.2e-26 Score=240.09 Aligned_cols=340 Identities=12% Similarity=0.087 Sum_probs=255.6
Q ss_pred hhccCCCCeEEeCCCCCCCC------------------CCCcC---CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEE
Q 013440 32 EETIQKDPIAISLPHRDIQE------------------LPERL---QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL 90 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 90 (443)
..+.+++++.|++++|.+.. +|... ++++|+.|++++|.. ...+|.. +.++++|++|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~-l~~L~~L~~L 520 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDF-LYDLPELQSL 520 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGG-GGGCSSCCEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHH-HhCCCCCCEE
Confidence 47788999999999999977 78765 699999999999987 6788866 4899999999
Q ss_pred EcCCCc-ccc--ccccccCCC-------CCcEEEecCCCCCC-cc--cccCCCCCCEEEcCCCCCCCCchhhcCCCCCCE
Q 013440 91 QFPGIG-SSS--LPSSLGRLI-------NLQTLCLDWCELAD-IA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157 (443)
Q Consensus 91 ~l~~~~-~~~--~p~~l~~l~-------~L~~L~l~~~~l~~-~~--~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 157 (443)
++++|. ++. +|..++.+. +|++|++++|.+.. |. .++++++|+.|++++|.++.+| .++++++|+.
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD 599 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceE
Confidence 999998 775 887776665 99999999999988 56 7999999999999999999998 8999999999
Q ss_pred EeccCCccccccchHHhhcCCC-CcEEEccCCCCCcccccCCCchhhhhccCC--CCCCEEEeecCCCCCCCC----cc-
Q 013440 158 LDLSNCWWLEVIAPNVISKLSQ-LEELYMGNGFSGWEKVEGGSNASLVELERL--TELTTLEIEVPDAEILPP----DF- 229 (443)
Q Consensus 158 L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~----~~- 229 (443)
|++++|.+. .+|.. +..+++ |+.|++++|.+...+ ..+..+ ++|+.|++++|.+...+. ..
T Consensus 600 L~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~L~~lp---------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 600 LKLDYNQIE-EIPED-FCAFTDQVEGLGFSHNKLKYIP---------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp EECCSSCCS-CCCTT-SCEECTTCCEEECCSSCCCSCC---------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred EECcCCccc-cchHH-HhhccccCCEEECcCCCCCcCc---------hhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 999997765 78876 788998 999999999876332 344444 349999999998844322 21
Q ss_pred --ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHh-------hcccceeeccccCCcccc
Q 013440 230 --VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKML-------LQRTEDLWLETLEGVQSV 300 (443)
Q Consensus 230 --~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------~~~L~~L~L~~~~~~~~~ 300 (443)
..++|+.|++..+...... ......+++|+.|++++|.+. .++ ...... +++|+.|+|++|... .+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp-~~~~~~l~~L~~L~Ls~N~L~-~ip--~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFP-TELFATGSPISTIILSNNLMT-SIP--ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCC-HHHHHTTCCCSEEECCSCCCS-CCC--TTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred cccCCCcCEEEccCCcCCccC-HHHHccCCCCCEEECCCCcCC-ccC--hHHhccccccccccCCccEEECCCCCCc-cc
Confidence 2257888888766555321 122346789999999998775 332 222211 248999999988655 45
Q ss_pred ccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccc-----cc-cccccccccccccccccceee
Q 013440 301 VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT-----NL-ETICYSQLREDQSFSNLRIIN 374 (443)
Q Consensus 301 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~-----~l-~~~~~~~~~~~~~~~~L~~L~ 374 (443)
+..+. ...+++|+.|+|++| .++.++ .....+++|+.|++++++ .+ ..++.. ...+++|++|+
T Consensus 744 p~~l~-~~~l~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~----l~~L~~L~~L~ 812 (876)
T 4ecn_A 744 SDDFR-ATTLPYLSNMDVSYN-CFSSFP-----TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG----ITTCPSLIQLQ 812 (876)
T ss_dssp CGGGS-TTTCTTCCEEECCSS-CCSSCC-----CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT----GGGCSSCCEEE
T ss_pred hHHhh-hccCCCcCEEEeCCC-CCCccc-----hhhhcCCCCCEEECCCCCCcccccccccChHH----HhcCCCCCEEE
Confidence 54332 247899999999998 344333 245578999999997743 22 222221 45689999999
Q ss_pred eccCcCcccccChhhhhcccccceeeeccCcc
Q 013440 375 VDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDD 406 (443)
Q Consensus 375 i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~ 406 (443)
+++|.- ..+|.. -+++|+.|++++|+-
T Consensus 813 Ls~N~L-~~Ip~~----l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 813 IGSNDI-RKVDEK----LTPQLYILDIADNPN 839 (876)
T ss_dssp CCSSCC-CBCCSC----CCSSSCEEECCSCTT
T ss_pred CCCCCC-CccCHh----hcCCCCEEECCCCCC
Confidence 998754 888753 236899999999863
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.9e-26 Score=236.01 Aligned_cols=340 Identities=11% Similarity=0.110 Sum_probs=253.3
Q ss_pred hhccCCCCeEEeCCCCCCCC------------------CCCcC---CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEE
Q 013440 32 EETIQKDPIAISLPHRDIQE------------------LPERL---QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL 90 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 90 (443)
..+.++++++|++++|.+.. +|... ++++|++|++++|.. ...+|..+ .++++|++|
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L 278 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFL-KALPEMQLI 278 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTT-TTCSSCCEE
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHH-hcCCCCCEE
Confidence 47788999999999999977 77655 599999999999987 67788664 899999999
Q ss_pred EcCCCc-ccc--ccccccCC------CCCcEEEecCCCCCC-cc--cccCCCCCCEEEcCCCCCC-CCchhhcCCCCCCE
Q 013440 91 QFPGIG-SSS--LPSSLGRL------INLQTLCLDWCELAD-IA--AIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQL 157 (443)
Q Consensus 91 ~l~~~~-~~~--~p~~l~~l------~~L~~L~l~~~~l~~-~~--~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~ 157 (443)
++++|. ++. +|..++.+ ++|++|++++|.+.. +. .++++++|++|++++|.++ .+| .+.++++|+.
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 999998 874 88888776 999999999999988 56 7999999999999999999 888 8999999999
Q ss_pred EeccCCccccccchHHhhcCCC-CcEEEccCCCCCcccccCCCchhhhhccCC--CCCCEEEeecCCCCC-CCCcc----
Q 013440 158 LDLSNCWWLEVIAPNVISKLSQ-LEELYMGNGFSGWEKVEGGSNASLVELERL--TELTTLEIEVPDAEI-LPPDF---- 229 (443)
Q Consensus 158 L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~~---- 229 (443)
|++++|.+. .+|.. +..+++ |++|++++|.+... + ..+..+ ++|++|++++|.+.. .|..+
T Consensus 358 L~L~~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~l~~l-p--------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 358 LNLAYNQIT-EIPAN-FCGFTEQVENLSFAHNKLKYI-P--------NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp EECCSSEEE-ECCTT-SEEECTTCCEEECCSSCCSSC-C--------SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred EECCCCccc-cccHh-hhhhcccCcEEEccCCcCccc-c--------hhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 999997655 78776 788998 99999999987733 2 344443 489999999988844 33322
Q ss_pred ----ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHh-------hcccceeeccccCCcc
Q 013440 230 ----VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKML-------LQRTEDLWLETLEGVQ 298 (443)
Q Consensus 230 ----~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------~~~L~~L~L~~~~~~~ 298 (443)
..++|+.+++..+..... ....+..+++|+.|++++|.+. .++. ..... +++|+.|++++|...
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~l~-~i~~--~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 501 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLT-EIPK--NSLKDENENFKNTYLLTSIDLRFNKLT- 501 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSCCS-BCCS--SSSEETTEECTTGGGCCEEECCSSCCC-
T ss_pred cccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCCCC-CcCH--HHhccccccccccCCccEEECcCCcCC-
Confidence 235788888866555432 1122445788999999998775 3322 22111 138999999888765
Q ss_pred ccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccc-----c-ccccccccccccccccccce
Q 013440 299 SVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT-----N-LETICYSQLREDQSFSNLRI 372 (443)
Q Consensus 299 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~-----~-l~~~~~~~~~~~~~~~~L~~ 372 (443)
.++..+. ...+++|++|++++|. ++.++ .....+++|+.|+++++. . ...++.. ...+++|++
T Consensus 502 ~lp~~~~-~~~l~~L~~L~Ls~N~-l~~ip-----~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~----l~~l~~L~~ 570 (636)
T 4eco_A 502 KLSDDFR-ATTLPYLVGIDLSYNS-FSKFP-----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG----ITLCPSLTQ 570 (636)
T ss_dssp BCCGGGS-TTTCTTCCEEECCSSC-CSSCC-----CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT----GGGCSSCCE
T ss_pred ccChhhh-hccCCCcCEEECCCCC-CCCcC-----hhhhcCCCCCEEECCCCcccccCcccccChHH----HhcCCCCCE
Confidence 4544332 2378899999999883 43343 244568899999996533 1 2223322 356889999
Q ss_pred eeeccCcCcccccChhhhhcccccceeeeccCcc
Q 013440 373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDD 406 (443)
Q Consensus 373 L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~ 406 (443)
|++++|.- +.+|.. + .++|+.|++++++-
T Consensus 571 L~Ls~N~l-~~ip~~-~---~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 571 LQIGSNDI-RKVNEK-I---TPNISVLDIKDNPN 599 (636)
T ss_dssp EECCSSCC-CBCCSC-C---CTTCCEEECCSCTT
T ss_pred EECCCCcC-CccCHh-H---hCcCCEEECcCCCC
Confidence 99988654 777643 2 27899999988853
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=7.4e-26 Score=218.39 Aligned_cols=304 Identities=12% Similarity=0.142 Sum_probs=220.2
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCC
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~ 133 (443)
.+++++.|+++++.. ..+|..++.++++|++|++++|.++.++ ..+..+++|++|++++|.+.. +..++++++|+
T Consensus 43 ~l~~l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCch--hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 567888888888874 7778777788888888888888887755 467888888888888888777 35578888888
Q ss_pred EEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCC
Q 013440 134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212 (443)
Q Consensus 134 ~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 212 (443)
+|++++|.++.+|.. +.++++|+.|++++|.+....+. .+..+++|++|++++|.+... .++.+++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~-----------~~~~l~~L 188 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV-----------DLSLIPSL 188 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBC-----------CGGGCTTC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCcc-----------cccccccc
Confidence 888888888888776 47888888888888655443333 377888888888888876542 24567788
Q ss_pred CEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeecc
Q 013440 213 TTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLE 292 (443)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 292 (443)
+.|++++|.+..++ ..++|+.+++..+...... ....++|+.|++++|.+... .++... ++|++|+++
T Consensus 189 ~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n~l~~~----~~l~~l-~~L~~L~Ls 256 (390)
T 3o6n_A 189 FHANVSYNLLSTLA---IPIAVEELDASHNSINVVR----GPVNVELTILKLQHNNLTDT----AWLLNY-PGLVEVDLS 256 (390)
T ss_dssp SEEECCSSCCSEEE---CCSSCSEEECCSSCCCEEE----CCCCSSCCEEECCSSCCCCC----GGGGGC-TTCSEEECC
T ss_pred ceeecccccccccC---CCCcceEEECCCCeeeecc----ccccccccEEECCCCCCccc----HHHcCC-CCccEEECC
Confidence 88888888775543 2357777777544433221 13457888899998776432 234433 889999999
Q ss_pred ccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccce
Q 013440 293 TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRI 372 (443)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~ 372 (443)
+|......+..+. .+++|++|+++++ .++.++ .....+|+|+.|+++++ .++.++.. ...+++|++
T Consensus 257 ~n~l~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~~ 322 (390)
T 3o6n_A 257 YNELEKIMYHPFV---KMQRLERLYISNN-RLVALN-----LYGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLEN 322 (390)
T ss_dssp SSCCCEEESGGGT---TCSSCCEEECCSS-CCCEEE-----CSSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSE
T ss_pred CCcCCCcChhHcc---ccccCCEEECCCC-cCcccC-----cccCCCCCCCEEECCCC-cceecCcc----ccccCcCCE
Confidence 8876555454444 7899999999988 455443 13357889999999986 56666543 356889999
Q ss_pred eeeccCcCcccccChhhhhcccccceeeeccCc
Q 013440 373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (443)
Q Consensus 373 L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~ 405 (443)
|++++|+ ++.++ ...+++|+.|++.+++
T Consensus 323 L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 323 LYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred EECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 9998864 66664 3567889999997753
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.9e-25 Score=212.01 Aligned_cols=287 Identities=15% Similarity=0.107 Sum_probs=202.7
Q ss_pred hhhhhhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccC
Q 013440 27 LEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR 106 (443)
Q Consensus 27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~ 106 (443)
+...+....++++++|++++|.+..++....+++|++|++++|.. ..++. +.++++|++|++++|.++.++. +..
T Consensus 56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~ 130 (347)
T 4fmz_A 56 VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISA--LQNLTNLRELYLNEDNISDISP-LAN 130 (347)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCSEEECTTSCCCCCGG-GTT
T ss_pred cccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc--cCchH--HcCCCcCCEEECcCCcccCchh-hcc
Confidence 445566788899999999999998888877999999999999985 55553 6899999999999999998877 889
Q ss_pred CCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEc
Q 013440 107 LINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (443)
Q Consensus 107 l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 185 (443)
+++|++|++++|.... +..+..+++|++|++++|.+..++. +..+++|+.|++++|.+ ..++. +..+++|+.+++
T Consensus 131 l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l 206 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI-EDISP--LASLTSLHYFTA 206 (347)
T ss_dssp CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-CCCGG--GGGCTTCCEEEC
T ss_pred CCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-ccccc--ccCCCccceeec
Confidence 9999999999996444 7779999999999999999987765 88999999999999754 44544 688999999999
Q ss_pred cCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEc
Q 013440 186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK 265 (443)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (443)
++|.+.... .++.+++|++|++++|.+..++....+++|+.+++..+..... +.+..+
T Consensus 207 ~~n~l~~~~----------~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l--------- 264 (347)
T 4fmz_A 207 YVNQITDIT----------PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI---NAVKDL--------- 264 (347)
T ss_dssp CSSCCCCCG----------GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGTTC---------
T ss_pred ccCCCCCCc----------hhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC---hhHhcC---------
Confidence 998775432 2788999999999999987766522345555555533322221 122333
Q ss_pred CccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccce
Q 013440 266 GIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345 (443)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 345 (443)
++|+.|++++|.... ++. ...+++|++|++++|. ++... ......+++|+.|
T Consensus 265 ------------------~~L~~L~l~~n~l~~-~~~----~~~l~~L~~L~L~~n~-l~~~~----~~~l~~l~~L~~L 316 (347)
T 4fmz_A 265 ------------------TKLKMLNVGSNQISD-ISV----LNNLSQLNSLFLNNNQ-LGNED----MEVIGGLTNLTTL 316 (347)
T ss_dssp ------------------TTCCEEECCSSCCCC-CGG----GGGCTTCSEEECCSSC-CCGGG----HHHHHTCTTCSEE
T ss_pred ------------------CCcCEEEccCCccCC-Chh----hcCCCCCCEEECcCCc-CCCcC----hhHhhccccCCEE
Confidence 455555555553222 211 2245666666666652 22111 1123445666666
Q ss_pred eccccccccccccccccccccccccceeeeccC
Q 013440 346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSC 378 (443)
Q Consensus 346 ~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c 378 (443)
++++|+ ++.++. ...+++|++|++++|
T Consensus 317 ~L~~n~-l~~~~~-----~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 317 FLSQNH-ITDIRP-----LASLSKMDSADFANQ 343 (347)
T ss_dssp ECCSSS-CCCCGG-----GGGCTTCSEESSSCC
T ss_pred EccCCc-cccccC-----hhhhhccceeehhhh
Confidence 666653 433322 244666666666664
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2e-26 Score=232.56 Aligned_cols=148 Identities=19% Similarity=0.273 Sum_probs=89.5
Q ss_pred cCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCCc
Q 013440 35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQ 111 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L~ 111 (443)
..+.+++|++++|.+..+++ ..++++|++|++++|.. ..++...|.++++|++|++++|.++.++.. ++.+++|+
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 34567777777777755532 23677777777777764 344433356677777777777777665543 66777777
Q ss_pred EEEecCCCCCC---cccccCCCCCCEEEcCCCC-CCCCc-hhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEc
Q 013440 112 TLCLDWCELAD---IAAIGQLKKLEILSLAYSN-INQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (443)
Q Consensus 112 ~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~-~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 185 (443)
+|++++|.+.. +..++++++|++|++++|. ++.+| ..+.++++|+.|++++|.+.+..|.. ++.+++|++|++
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l 179 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTL 179 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEE
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEec
Confidence 77777777653 3556667777777777765 44554 34666667777766665544444432 333333333333
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=223.60 Aligned_cols=143 Identities=15% Similarity=0.203 Sum_probs=75.7
Q ss_pred eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCC
Q 013440 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (443)
Q Consensus 40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~ 118 (443)
++++++++.++.+|.... ++|+.|++++|.. ..++...|.++++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 355555555555554333 5566666666553 334433345566666666666665553 445555666666666666
Q ss_pred CCCCcccccCCCCCCEEEcCCCCCCC--CchhhcCCCCCCEEeccCCccccccchHHhhcCCCC--cEEEccCCCC
Q 013440 119 ELADIAAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL--EELYMGNGFS 190 (443)
Q Consensus 119 ~l~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 190 (443)
.+..++.. .+++|++|++++|.++. +|..++++++|++|++++|.+.+. .+..+++| ++|++++|.+
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTT
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeecccc
Confidence 55552222 55666666666665553 345555666666666655443321 13444444 5555555544
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.2e-25 Score=229.53 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=82.4
Q ss_pred hccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCC
Q 013440 33 ETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLIN 109 (443)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~ 109 (443)
...++++++|++++|.+..+++. .++++|++|++++|.. ..+++..|.++++|++|++++|.++.++ ..++.+++
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l--~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI--QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc--cccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 55678888888888888666442 3788888888888875 4443333578888888888888887755 56788888
Q ss_pred CcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCCC
Q 013440 110 LQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQ 144 (443)
Q Consensus 110 L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~ 144 (443)
|++|++++|.+.. +..++++++|++|++++|.++.
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 8888888888764 5677888888888888877663
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=8.7e-26 Score=227.82 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=127.9
Q ss_pred EEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCC
Q 013440 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCE 119 (443)
Q Consensus 41 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~ 119 (443)
+.+..++.+..+|... .+.|++|++++|.. ..++...|.++++|++|++++|.++.++ ..+..+++|++|++++|.
T Consensus 9 ~c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGL-TAAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSSCC--CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred eEECCCCccccccccC-CCCccEEECcCCcc--CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 3566777888888755 38999999999996 4444444689999999999999998865 679999999999999999
Q ss_pred CCC-c-ccccCCCCCCEEEcCCCCCCC--CchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440 120 LAD-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (443)
Q Consensus 120 l~~-~-~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (443)
+.. + ..++++++|++|++++|.++. .|..+.++++|+.|++++|...+.++...+..+++|++|++++|.+....+
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 988 4 559999999999999999984 567799999999999999887777875558899999999999998766443
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=6.8e-25 Score=217.38 Aligned_cols=314 Identities=17% Similarity=0.081 Sum_probs=210.1
Q ss_pred eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCC
Q 013440 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (443)
Q Consensus 40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~ 118 (443)
+.++..+..+..+|... .+.++.|++++|.. ..++...|.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45666666666666533 35778888888775 445444467788888888888877764 667778888888888888
Q ss_pred CCCC-c-ccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440 119 ELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (443)
Q Consensus 119 ~l~~-~-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (443)
.+.. + ..++++++|++|++++|.++.+ +..+.++++|+.|++++|.+....+. .+..+++|++|++++|.+.....
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCcccCh
Confidence 7777 3 4567788888888888877744 45577788888888887655443343 36777888888888877665443
Q ss_pred cCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccc
Q 013440 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL 273 (443)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 273 (443)
..++.+++|+.|++.+|.+..++... .+++|+.+++..+....... .......+|+.|++++|.+.. +
T Consensus 170 --------~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~-~ 239 (477)
T 2id5_A 170 --------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNLTSLSITHCNLTA-V 239 (477)
T ss_dssp --------HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC-TTTTTTCCCSEEEEESSCCCS-C
T ss_pred --------hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC-cccccCccccEEECcCCcccc-c
Confidence 55777788888888888776655433 34677777775433222111 111233488899999886642 2
Q ss_pred cccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccc
Q 013440 274 QENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL 353 (443)
Q Consensus 274 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 353 (443)
+......+++|+.|++++|.........+ ..+++|++|++.++ .++.+. ......+++|+.|+++++ .+
T Consensus 240 --~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~N-~l 308 (477)
T 2id5_A 240 --PYLAVRHLVYLRFLNLSYNPISTIEGSML---HELLRLQEIQLVGG-QLAVVE----PYAFRGLNYLRVLNVSGN-QL 308 (477)
T ss_dssp --CHHHHTTCTTCCEEECCSSCCCEECTTSC---TTCTTCCEEECCSS-CCSEEC----TTTBTTCTTCCEEECCSS-CC
T ss_pred --CHHHhcCccccCeeECCCCcCCccChhhc---cccccCCEEECCCC-ccceEC----HHHhcCcccCCEEECCCC-cC
Confidence 22222234889999999887554433333 37889999999988 344432 124567889999999885 67
Q ss_pred cccccccccccccccccceeeeccCcCc
Q 013440 354 ETICYSQLREDQSFSNLRIINVDSCRKL 381 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~L~~L~i~~c~~l 381 (443)
+.++... ...+++|++|++.+++--
T Consensus 309 ~~~~~~~---~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 309 TTLEESV---FHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCCCGGG---BSCGGGCCEEECCSSCEE
T ss_pred ceeCHhH---cCCCcccCEEEccCCCcc
Confidence 7665432 245788999999886543
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.6e-25 Score=224.39 Aligned_cols=304 Identities=12% Similarity=0.143 Sum_probs=206.7
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCC
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~ 133 (443)
.+.+++.++++++.. ..+|..+|.++++|++|++++|.++.++ ..++.+++|++|++++|.+.. +..++++++|+
T Consensus 49 ~l~~l~~l~l~~~~l--~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCC--CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 567788888888774 6777777788888888888888887754 467788888888888888777 35567888888
Q ss_pred EEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCC
Q 013440 134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212 (443)
Q Consensus 134 ~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 212 (443)
+|++++|.++.+|.. +.++++|+.|++++|.+.+..+. .+..+++|+.|++++|.+... .++.+++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~-----------~~~~l~~L 194 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV-----------DLSLIPSL 194 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBC-----------CGGGCTTC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCc-----------Chhhhhhh
Confidence 888888888877766 47888888888888665444443 367788888888888776542 24556778
Q ss_pred CEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeecc
Q 013440 213 TTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLE 292 (443)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 292 (443)
+.|++++|.+..++ ...+|+.+++..+...... ....++|+.|++++|.+.. +.++..+ ++|+.|+++
T Consensus 195 ~~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~~~~----~~~~~~L~~L~L~~n~l~~----~~~l~~l-~~L~~L~Ls 262 (597)
T 3oja_B 195 FHANVSYNLLSTLA---IPIAVEELDASHNSINVVR----GPVNVELTILKLQHNNLTD----TAWLLNY-PGLVEVDLS 262 (597)
T ss_dssp SEEECCSSCCSEEE---CCTTCSEEECCSSCCCEEE----CSCCSCCCEEECCSSCCCC----CGGGGGC-TTCSEEECC
T ss_pred hhhhcccCcccccc---CCchhheeeccCCcccccc----cccCCCCCEEECCCCCCCC----ChhhccC-CCCCEEECC
Confidence 88888877765443 2356777776544332211 1233577888888876643 2333333 778888888
Q ss_pred ccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccce
Q 013440 293 TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRI 372 (443)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~ 372 (443)
+|......+..+. .+++|++|+|++| .++.++ .....+|+|+.|+++++ .++.++.. ...+++|+.
T Consensus 263 ~N~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~l~-----~~~~~l~~L~~L~Ls~N-~l~~i~~~----~~~l~~L~~ 328 (597)
T 3oja_B 263 YNELEKIMYHPFV---KMQRLERLYISNN-RLVALN-----LYGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLEN 328 (597)
T ss_dssp SSCCCEEESGGGT---TCSSCCEEECTTS-CCCEEE-----CSSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSE
T ss_pred CCccCCCCHHHhc---CccCCCEEECCCC-CCCCCC-----cccccCCCCcEEECCCC-CCCccCcc----cccCCCCCE
Confidence 7766555444444 7788888888877 444443 13355788888888875 55555433 345788888
Q ss_pred eeeccCcCcccccChhhhhcccccceeeeccCc
Q 013440 373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (443)
Q Consensus 373 L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~ 405 (443)
|++++|. ++.++ ...+++|+.|++.+++
T Consensus 329 L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 329 LYLDHNS-IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred EECCCCC-CCCcC----hhhcCCCCEEEeeCCC
Confidence 8888754 55554 3556788888887654
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.2e-24 Score=219.90 Aligned_cols=148 Identities=19% Similarity=0.256 Sum_probs=107.8
Q ss_pred cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEE
Q 013440 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTL 113 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L 113 (443)
.+...++++++++.++.+|.... ++|+.|++++|.. ..++...|.++++|++|++++|.++.+ |..+..+++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 34445788888888887776443 7888888888885 555554568888888888888888875 5668888888888
Q ss_pred EecCCCCCCcccccCCCCCCEEEcCCCCCCCCc--hhhcCCCCCCEEeccCCccccccchHHhhcCCCC--cEEEccCCC
Q 013440 114 CLDWCELADIAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL--EELYMGNGF 189 (443)
Q Consensus 114 ~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~ 189 (443)
++++|.+..++.. .+++|++|++++|.++.++ ..++++++|+.|++++|.+... . +..+++| ++|++++|.
T Consensus 106 ~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 106 DVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp ECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEESS
T ss_pred ECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeeccc
Confidence 8888888773222 7888888888888887653 6788888888888888655432 1 3444555 888887776
Q ss_pred C
Q 013440 190 S 190 (443)
Q Consensus 190 ~ 190 (443)
+
T Consensus 181 l 181 (562)
T 3a79_B 181 Y 181 (562)
T ss_dssp C
T ss_pred c
Confidence 5
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=3.2e-25 Score=224.66 Aligned_cols=346 Identities=16% Similarity=0.090 Sum_probs=222.8
Q ss_pred hhccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCC
Q 013440 32 EETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLI 108 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~ 108 (443)
....++++++|++++|.+..+++. .++++|++|++++|.. ..++...|.++++|++|++++|.++.++. .++.++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC--CccCHhhhcCccccccccccccccccCCCccccccc
Confidence 456678999999999999777643 3899999999999985 55555556899999999999999988765 588999
Q ss_pred CCcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCc-hhhcCCCCC----CEEeccCCccccccc----------
Q 013440 109 NLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRL----QLLDLSNCWWLEVIA---------- 170 (443)
Q Consensus 109 ~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L----~~L~l~~~~~~~~~~---------- 170 (443)
+|++|++++|.+.. +..++++++|++|++++|.++.++ ..+..+++| +.+++++|.+....+
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 99999999998775 677889999999999999887543 345555555 555555543221111
Q ss_pred ----------------------------------------------------------------------hHHhhcCCCC
Q 013440 171 ----------------------------------------------------------------------PNVISKLSQL 180 (443)
Q Consensus 171 ----------------------------------------------------------------------~~~l~~l~~L 180 (443)
...+..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 0113445666
Q ss_pred cEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCc---------------------cccccCcEEEE
Q 013440 181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD---------------------FVSVELQRYKI 239 (443)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------------------~~~~~L~~l~l 239 (443)
+.|++++|.+...+ ..+..+ +|++|++.+|.+..+|.. ..+++|+.+++
T Consensus 285 ~~L~l~~~~l~~l~---------~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l 354 (570)
T 2z63_A 285 SSFSLVSVTIERVK---------DFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354 (570)
T ss_dssp SEEEEESCEECSCC---------BCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred cEEEecCccchhhh---------hhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence 66666666544322 222233 444444444443333321 12234444444
Q ss_pred EecCCCCCCC-Cch-----------------------hcccccceeEEEcCccccccccccchhhHhhcccceeeccccC
Q 013440 240 RIGDGPEDEF-DPL-----------------------LVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE 295 (443)
Q Consensus 240 ~~~~~~~~~~-~~~-----------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 295 (443)
..+....... ... +..+++|+.|++.+|......+ ...+.. +++|++|++++|.
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~-l~~L~~L~l~~n~ 432 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLS-LRNLIYLDISHTH 432 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT-SCTTTT-CTTCCEEECTTSC
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc-hhhhhc-CCCCCEEeCcCCc
Confidence 2222111000 011 3445566666666655432221 112222 3788888888886
Q ss_pred CccccccccccCCCCCCccEEEEecccCc-eeecccccccccCccCcccceeccccccccccccccccccccccccceee
Q 013440 296 GVQSVVHELDDGEGFPRLKRLLVTDCSEI-LHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIIN 374 (443)
Q Consensus 296 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~ 374 (443)
.....+..+. .+++|++|++.+|.-. ..++ .....+++|+.|++++| .++.+.... ...+++|++|+
T Consensus 433 l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~p-----~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~ 500 (570)
T 2z63_A 433 TRVAFNGIFN---GLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQC-QLEQLSPTA---FNSLSSLQVLN 500 (570)
T ss_dssp CEECCTTTTT---TCTTCCEEECTTCEEGGGEEC-----SCCTTCTTCCEEECTTS-CCCEECTTT---TTTCTTCCEEE
T ss_pred ccccchhhhh---cCCcCcEEECcCCcCccccch-----hhhhcccCCCEEECCCC-ccccCChhh---hhcccCCCEEe
Confidence 6555444443 7999999999999522 1222 35678899999999997 566653322 35689999999
Q ss_pred eccCcCcccccChhhhhcccccceeeeccCc
Q 013440 375 VDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (443)
Q Consensus 375 i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~ 405 (443)
+++| .++.+++ ..+..+++|+.|++.+++
T Consensus 501 l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 501 MASN-QLKSVPD-GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCC-cCCCCCH-HHhhcccCCcEEEecCCc
Confidence 9986 6777765 345789999999998865
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=230.02 Aligned_cols=163 Identities=21% Similarity=0.287 Sum_probs=131.2
Q ss_pred hhhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cc
Q 013440 26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PS 102 (443)
Q Consensus 26 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~ 102 (443)
++...|. .++++++|++++|.++.+.+ ..++++|++|++++|.. ...++...|.++++|++|++++|.+..+ |.
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 3455555 67899999999999976643 33999999999999965 5666555579999999999999999875 88
Q ss_pred cccCCCCCcEEEecCCCCCC--ccc--ccCCCCCCEEEcCCCCCCCC--chhhcCCCCCCEEeccCCccccccchHHhhc
Q 013440 103 SLGRLINLQTLCLDWCELAD--IAA--IGQLKKLEILSLAYSNINQL--PVEIGQLTRLQLLDLSNCWWLEVIAPNVISK 176 (443)
Q Consensus 103 ~l~~l~~L~~L~l~~~~l~~--~~~--~~~l~~L~~L~l~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 176 (443)
.++.+++|++|++++|.+.+ +.. ++++++|++|++++|.++.+ +..++++++|+.|++++|.+....+.. +..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-ccc
Confidence 89999999999999999876 443 89999999999999998854 356899999999999997765555543 444
Q ss_pred C--CCCcEEEccCCCCCc
Q 013440 177 L--SQLEELYMGNGFSGW 192 (443)
Q Consensus 177 l--~~L~~L~l~~~~~~~ 192 (443)
+ ++|+.|+++.|.+..
T Consensus 171 l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp HHHCSSCCCEECCSBSCC
T ss_pred ccCCccceEECCCCcccc
Confidence 4 667777777665544
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=9.2e-25 Score=210.70 Aligned_cols=303 Identities=18% Similarity=0.183 Sum_probs=241.6
Q ss_pred ccCCCCeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCC
Q 013440 34 TIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINL 110 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L 110 (443)
-.+.+++++++.++.++.+|... .+++|++|++++|.. ..++...|.++++|++|++++|.++.++ ..++.+++|
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 35689999999999999998754 899999999999985 5566555789999999999999999865 558999999
Q ss_pred cEEEecCCCCCC-cc-cccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440 111 QTLCLDWCELAD-IA-AIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (443)
Q Consensus 111 ~~L~l~~~~l~~-~~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 187 (443)
++|++++|.+.. +. .++++++|++|++++|.++.++. .+.++++|+.|++++|.+. .++ +..+++|+.+++++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSY 195 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---cccccccceeeccc
Confidence 999999999988 44 46899999999999999987654 5899999999999996644 344 56789999999999
Q ss_pred CCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (443)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (443)
|.+. .+...++|++|++++|.+..++.. ..++|+.+++..+..... ..+..+++|+.|++++|
T Consensus 196 n~l~-------------~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 196 NLLS-------------TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp SCCS-------------EEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS
T ss_pred cccc-------------ccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCccc---HHHcCCCCccEEECCCC
Confidence 8763 344556899999999999877654 458999999976655543 55788999999999998
Q ss_pred cccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceec
Q 013440 268 KKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL 347 (443)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 347 (443)
.+.... +..+... ++|+.|++++|.... ++.. ...+++|++|++++| .++.++ .....+++|+.|++
T Consensus 259 ~l~~~~--~~~~~~l-~~L~~L~L~~n~l~~-~~~~---~~~l~~L~~L~L~~n-~l~~~~-----~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 259 ELEKIM--YHPFVKM-QRLERLYISNNRLVA-LNLY---GQPIPTLKVLDLSHN-HLLHVE-----RNQPQFDRLENLYL 325 (390)
T ss_dssp CCCEEE--SGGGTTC-SSCCEEECCSSCCCE-EECS---SSCCTTCCEEECCSS-CCCCCG-----GGHHHHTTCSEEEC
T ss_pred cCCCcC--hhHcccc-ccCCEEECCCCcCcc-cCcc---cCCCCCCCEEECCCC-cceecC-----ccccccCcCCEEEC
Confidence 875432 2334433 899999999986544 3333 237899999999999 455543 23467899999999
Q ss_pred cccccccccccccccccccccccceeeeccCc
Q 013440 348 MFLTNLETICYSQLREDQSFSNLRIINVDSCR 379 (443)
Q Consensus 348 ~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~ 379 (443)
+++ .++.++ ...+++|++|++++++
T Consensus 326 ~~N-~i~~~~------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 326 DHN-SIVTLK------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CSS-CCCCCC------CCTTCCCSEEECCSSC
T ss_pred CCC-ccceeC------chhhccCCEEEcCCCC
Confidence 996 466553 4568999999999854
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=9.4e-24 Score=218.43 Aligned_cols=155 Identities=19% Similarity=0.150 Sum_probs=112.1
Q ss_pred cCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCc
Q 013440 35 IQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQ 111 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~ 111 (443)
..+++++|+++++.+..+++. .++++|++|++++|.. ..++...|.++++|++|++++|.++.+|. .++.+++|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 457888888888888777753 3788888888888875 44444456788888888888888888775 478888888
Q ss_pred EEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhh--cCCCCcEEEcc
Q 013440 112 TLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVIS--KLSQLEELYMG 186 (443)
Q Consensus 112 ~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~ 186 (443)
+|++++|.+.. +..++++++|++|++++|.++.. |..++++++|+.|++++|.+.+..+. .+. .+++|++|+++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE-ELDIFANSSLKKLELS 179 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH-HHGGGTTCEESEEECT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH-HhhccccccccEEECC
Confidence 88888888777 35678888888888888877744 44577788888888887654333332 222 34667777776
Q ss_pred CCCCCc
Q 013440 187 NGFSGW 192 (443)
Q Consensus 187 ~~~~~~ 192 (443)
+|.+..
T Consensus 180 ~n~l~~ 185 (680)
T 1ziw_A 180 SNQIKE 185 (680)
T ss_dssp TCCCCC
T ss_pred CCcccc
Confidence 665443
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2.2e-24 Score=212.34 Aligned_cols=346 Identities=14% Similarity=0.118 Sum_probs=253.6
Q ss_pred eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccc-cc-cccccCCCCCcEEEecC
Q 013440 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SL-PSSLGRLINLQTLCLDW 117 (443)
Q Consensus 40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~-p~~l~~l~~L~~L~l~~ 117 (443)
+.++..+++++.+|. -.++|++|++++|.. ..++...|.++++|++|++++|.+. .+ +..+..+++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 456777788888887 348999999999986 4454444689999999999999986 44 56789999999999999
Q ss_pred CCCCC--cccccCCCCCCEEEcCCCCCCC-Cchh--hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440 118 CELAD--IAAIGQLKKLEILSLAYSNINQ-LPVE--IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (443)
Q Consensus 118 ~~l~~--~~~~~~l~~L~~L~l~~~~~~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (443)
|.+.. +..++++++|++|++++|.++. .+.. +.++++|+.|++++|.+.+..|...+..+++|++|++++|.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 99887 5789999999999999999985 4444 88999999999999877666676557899999999999998876
Q ss_pred ccccCCCchhhhhccCC--CCCCEEEeecCCCCCCCCcc----------ccccCcEEEEEecCCCCCCCCchhc---ccc
Q 013440 193 EKVEGGSNASLVELERL--TELTTLEIEVPDAEILPPDF----------VSVELQRYKIRIGDGPEDEFDPLLV---KSE 257 (443)
Q Consensus 193 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~----------~~~~L~~l~l~~~~~~~~~~~~~~~---~~~ 257 (443)
..+ ..+..+ .+|+.|++++|.+..++... ..++|+.+++..+...... ...+. ...
T Consensus 169 ~~~--------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~~~~ 239 (455)
T 3v47_A 169 ICE--------EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM-AKRFFDAIAGT 239 (455)
T ss_dssp CCT--------TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH-HHHHHHHTTTC
T ss_pred cCh--------hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc-hhhhhcccccc
Confidence 554 344443 68899999999987766442 2267888887544332211 01111 237
Q ss_pred cceeEEEcCccccccccc--------cchhhH-hhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeec
Q 013440 258 ASRLMMLKGIKKVSILQE--------NDGTKM-LLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIV 328 (443)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~--------~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 328 (443)
+++.+++++|........ ...+.. ..++|+.|+++++......+..+. .+++|++|++++|. ++.+.
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~-l~~~~ 315 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS---HFTDLEQLTLAQNE-INKID 315 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT---TCTTCCEEECTTSC-CCEEC
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc---cCCCCCEEECCCCc-ccccC
Confidence 888888887644221100 001111 126899999999887666555444 89999999999984 44432
Q ss_pred ccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCcccc
Q 013440 329 GSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLK 408 (443)
Q Consensus 329 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~ 408 (443)
......+++|+.|+++++ .++.+.... ...+++|++|++++| .++.+++ ..+..+++|+.|++.++ +++
T Consensus 316 ----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~ 384 (455)
T 3v47_A 316 ----DNAFWGLTHLLKLNLSQN-FLGSIDSRM---FENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTN-QLK 384 (455)
T ss_dssp ----TTTTTTCTTCCEEECCSS-CCCEECGGG---GTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCS
T ss_pred ----hhHhcCcccCCEEECCCC-ccCCcChhH---hcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCC-ccc
Confidence 124567899999999986 566664332 356899999999986 5666654 33577999999999997 677
Q ss_pred ccccC
Q 013440 409 MIIGP 413 (443)
Q Consensus 409 ~~~~~ 413 (443)
.++..
T Consensus 385 ~~~~~ 389 (455)
T 3v47_A 385 SVPDG 389 (455)
T ss_dssp CCCTT
T ss_pred cCCHh
Confidence 66654
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.3e-24 Score=210.37 Aligned_cols=309 Identities=13% Similarity=0.071 Sum_probs=230.2
Q ss_pred hhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440 32 EETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ 111 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~ 111 (443)
+.+.++++++|+++++.+..+|....+++|+.|++++|.. ..++ +..+++|++|++++|.++.++ ++.+++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l--~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI--TTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC--SCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC--CeEc---cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 5567799999999999998888767999999999999986 4454 578999999999999999885 88999999
Q ss_pred EEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440 112 TLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (443)
Q Consensus 112 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (443)
+|++++|.+..+. ++.+++|++|++++|.++.++ ++++++|+.|++++|...+.++ +..+++|+.|++++|.+.
T Consensus 110 ~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 110 YLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc
Confidence 9999999988853 889999999999999999874 8899999999999987777774 678999999999999875
Q ss_pred cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccc
Q 013440 192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS 271 (443)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (443)
.. .++.+++|+.|++++|.+..++ ...+++|+.+++..+..... + +..+++|+.|++++|.+.+
T Consensus 184 ~l-----------~l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~i---p-~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 184 EL-----------DVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEI---D-VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CC-----------CCTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSC
T ss_pred ee-----------ccccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCccccc---C-ccccCCCCEEEeeCCcCCC
Confidence 42 1678899999999999998774 22568999999976655542 2 5788999999999988754
Q ss_pred cccccchhhHh------hcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeeccccc---ccccCccCcc
Q 013440 272 ILQENDGTKML------LQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVR---RVRCEVFPLL 342 (443)
Q Consensus 272 ~~~~~~~~~~~------~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~~~~~~~L 342 (443)
. + ...+..+ ..+|+.|++++|.....++ .+.|++|+.|++++|..++.++.... .......++|
T Consensus 248 ~-~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 248 L-D-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp C-C-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred c-C-HHHCCCCCEEeccCCCCCEEECCCCccCCccc-----ccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 3 2 1111111 0144556666665444443 34788999999999987766652100 0022334455
Q ss_pred cceeccccccccccccccccccccccccceeeeccCcCcccc
Q 013440 343 EALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYL 384 (443)
Q Consensus 343 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~ 384 (443)
+.|+++++ .++.++ ...+++|+.|++++ ..++++
T Consensus 321 ~~L~L~~N-~l~~l~------l~~l~~L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 321 VYLYLNNT-ELTELD------VSHNTKLKSLSCVN-AHIQDF 354 (457)
T ss_dssp CEEECTTC-CCSCCC------CTTCTTCSEEECCS-SCCCBC
T ss_pred CEEECCCC-cccccc------cccCCcCcEEECCC-CCCCCc
Confidence 55555443 333331 45677888888876 455554
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=1.7e-23 Score=216.54 Aligned_cols=151 Identities=23% Similarity=0.225 Sum_probs=118.6
Q ss_pred hccCCCCeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCC
Q 013440 33 ETIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLIN 109 (443)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~ 109 (443)
...++++++|+++++.+..+++.. ++++|++|++++|.. ..++...|.++++|++|++++|.++.++ ..++.+++
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL--SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc--CccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 566789999999999987665433 899999999999985 6777766789999999999999998866 67889999
Q ss_pred CcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchh-h--cCCCCCCEEeccCCccccccchHHhhcCCCCcEEE
Q 013440 110 LQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-I--GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELY 184 (443)
Q Consensus 110 L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~--~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 184 (443)
|++|++++|.+.. +..++++++|++|++++|.++.++.. + ..+++|+.|++++|.+.+..+. .+..+.+|+.+.
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 201 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLF 201 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhh
Confidence 9999999999877 56788899999999999998876553 3 3678999999999765544443 355554444444
Q ss_pred cc
Q 013440 185 MG 186 (443)
Q Consensus 185 l~ 186 (443)
+.
T Consensus 202 l~ 203 (680)
T 1ziw_A 202 LN 203 (680)
T ss_dssp CT
T ss_pred cc
Confidence 33
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.5e-24 Score=217.08 Aligned_cols=303 Identities=18% Similarity=0.179 Sum_probs=241.1
Q ss_pred cCCCCeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCc
Q 013440 35 IQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQ 111 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~ 111 (443)
.+.+++.+++.++.+..+|+.. .+++|+.|++++|.. ..++...|..+++|++|++++|.++.+| ..++.+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4578999999999998888754 799999999999986 5555545689999999999999999865 4579999999
Q ss_pred EEEecCCCCCC-cc-cccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCC
Q 013440 112 TLCLDWCELAD-IA-AIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG 188 (443)
Q Consensus 112 ~L~l~~~~l~~-~~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 188 (443)
+|++++|.+.. +. .++++++|++|++++|.++.++. .+.++++|+.|++++|.+. .++ +..+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhhhhhhcccC
Confidence 99999999988 44 46899999999999999986654 6899999999999997654 344 467899999999998
Q ss_pred CCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcc
Q 013440 189 FSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK 268 (443)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 268 (443)
.+. .+....+|+.|++++|.+..++.. ..++|+.|++..+..... ..+..+++|+.|++++|.
T Consensus 203 ~l~-------------~l~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 203 LLS-------------TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp CCS-------------EEECCTTCSEEECCSSCCCEEECS-CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC
T ss_pred ccc-------------cccCCchhheeeccCCcccccccc-cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCc
Confidence 763 345567899999999999777655 347899999976655442 557889999999999998
Q ss_pred ccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecc
Q 013440 269 KVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (443)
Q Consensus 269 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (443)
+.+.. +..+..+ ++|+.|+|++|.... ++.. ...+++|++|+|++|. ++.++ .....+++|+.|+++
T Consensus 266 l~~~~--~~~~~~l-~~L~~L~Ls~N~l~~-l~~~---~~~l~~L~~L~Ls~N~-l~~i~-----~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 266 LEKIM--YHPFVKM-QRLERLYISNNRLVA-LNLY---GQPIPTLKVLDLSHNH-LLHVE-----RNQPQFDRLENLYLD 332 (597)
T ss_dssp CCEEE--SGGGTTC-SSCCEEECTTSCCCE-EECS---SSCCTTCCEEECCSSC-CCCCG-----GGHHHHTTCSEEECC
T ss_pred cCCCC--HHHhcCc-cCCCEEECCCCCCCC-CCcc---cccCCCCcEEECCCCC-CCccC-----cccccCCCCCEEECC
Confidence 75543 2334443 899999999986544 4333 3378999999999994 44443 234678999999999
Q ss_pred ccccccccccccccccccccccceeeeccCcC
Q 013440 349 FLTNLETICYSQLREDQSFSNLRIINVDSCRK 380 (443)
Q Consensus 349 ~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~ 380 (443)
++ .++.++ ...+++|+.|++++++-
T Consensus 333 ~N-~l~~~~------~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 333 HN-SIVTLK------LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp SS-CCCCCC------CCTTCCCSEEECCSSCE
T ss_pred CC-CCCCcC------hhhcCCCCEEEeeCCCC
Confidence 96 455553 45689999999998653
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=208.68 Aligned_cols=295 Identities=18% Similarity=0.119 Sum_probs=233.2
Q ss_pred ccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCC
Q 013440 34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINL 110 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L 110 (443)
...+.++.|+++++.+..+++ +.++++|++|++++|.. ..+....|.++++|++|++++|.++.+|. .+..+++|
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 456889999999999977754 33899999999999986 45544446899999999999999999875 47899999
Q ss_pred cEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (443)
Q Consensus 111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 187 (443)
++|++++|.+.. +..+..+++|++|++++|.++.+ +..+.++++|+.|++++|.+ ..++...+..+++|+.|++++
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTCTTCCEEEEES
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHhcccCCCcEEeCCC
Confidence 999999999887 47789999999999999999855 45689999999999999654 556665689999999999999
Q ss_pred CCCCcccccCCCchhhhhccCCCCCCEEEeecCCC-CCCCCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEc
Q 013440 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA-EILPPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK 265 (443)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (443)
|.+..... ..+..+++|++|++++|.. ..++... ...+|+.+++..+...... ...+..+++|+.|+++
T Consensus 186 n~i~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 186 LNINAIRD--------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLS 256 (477)
T ss_dssp CCCCEECT--------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-HHHHTTCTTCCEEECC
T ss_pred CcCcEeCh--------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-HHHhcCccccCeeECC
Confidence 98876554 5688999999999998765 4555544 3369999999776554322 2346788999999999
Q ss_pred CccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccce
Q 013440 266 GIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345 (443)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 345 (443)
+|.+.... ...+.. +++|+.|++++|......+..+. .+++|++|++++| .++.++. .....+++|+.|
T Consensus 257 ~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~----~~~~~l~~L~~L 325 (477)
T 2id5_A 257 YNPISTIE--GSMLHE-LLRLQEIQLVGGQLAVVEPYAFR---GLNYLRVLNVSGN-QLTTLEE----SVFHSVGNLETL 325 (477)
T ss_dssp SSCCCEEC--TTSCTT-CTTCCEEECCSSCCSEECTTTBT---TCTTCCEEECCSS-CCSCCCG----GGBSCGGGCCEE
T ss_pred CCcCCccC--hhhccc-cccCCEEECCCCccceECHHHhc---CcccCCEEECCCC-cCceeCH----hHcCCCcccCEE
Confidence 98875332 222333 38999999999876665455444 8999999999998 4554431 234678999999
Q ss_pred eccccc
Q 013440 346 SLMFLT 351 (443)
Q Consensus 346 ~l~~c~ 351 (443)
++++++
T Consensus 326 ~l~~N~ 331 (477)
T 2id5_A 326 ILDSNP 331 (477)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 998764
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=3.7e-23 Score=218.54 Aligned_cols=331 Identities=15% Similarity=0.089 Sum_probs=215.5
Q ss_pred eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcc-ccc-cccccCCCCCcEEEecC
Q 013440 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSL-PSSLGRLINLQTLCLDW 117 (443)
Q Consensus 40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~-p~~l~~l~~L~~L~l~~ 117 (443)
+..+.+++++..+|. ..++++.|++++|.. ..+....|.++++|++|++++|.. ..+ |..+..+++|++|++++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 467778888888988 678999999999986 444444468999999999999954 455 67899999999999999
Q ss_pred CCCCC--cccccCCCCCCEEEcCCCCCCC-Cchh--hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440 118 CELAD--IAAIGQLKKLEILSLAYSNINQ-LPVE--IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (443)
Q Consensus 118 ~~l~~--~~~~~~l~~L~~L~l~~~~~~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (443)
|.+.. +..++++++|++|++++|.++. +|.. +.++++|++|++++|.+.+..+...++.+++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99887 6889999999999999999884 5554 89999999999999877665554448999999999999998765
Q ss_pred ccccCCCchhhhhccCC--CCCCEEEeecCCCCC-CCCcc-ccc------cCcEEEEEecCCCCCCC-------------
Q 013440 193 EKVEGGSNASLVELERL--TELTTLEIEVPDAEI-LPPDF-VSV------ELQRYKIRIGDGPEDEF------------- 249 (443)
Q Consensus 193 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~~-~~~------~L~~l~l~~~~~~~~~~------------- 249 (443)
..+ ..++.+ ++|+.|+++.|.+.. .+..+ .+. .|+.+++..+.......
T Consensus 163 ~~~--------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 163 VCE--------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp CCS--------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred eCH--------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 543 333333 566666776665532 22211 111 25555553321110000
Q ss_pred ----------------------Cchhc--ccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccc
Q 013440 250 ----------------------DPLLV--KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELD 305 (443)
Q Consensus 250 ----------------------~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 305 (443)
...+. ..++++.|++++|.+.... +..+.. +++|+.|++++|......+..+.
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~ 311 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN--SRVFET-LKDLKVLNLAYNKINKIADEAFY 311 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC--SCCSSS-CCCCCEEEEESCCCCEECTTTTT
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC--hhhhhc-CCCCCEEECCCCcCCCCChHHhc
Confidence 00001 1256777777776553322 222222 36777777777665444443333
Q ss_pred cCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCccccc
Q 013440 306 DGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLF 385 (443)
Q Consensus 306 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 385 (443)
.+++|++|++++|. ++.+. ......+++|+.|+++++ .++.++... ...+++|++|+++++ .++.++
T Consensus 312 ---~l~~L~~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~L~~N-~i~~~~~~~---~~~l~~L~~L~Ls~N-~l~~i~ 378 (844)
T 3j0a_A 312 ---GLDNLQVLNLSYNL-LGELY----SSNFYGLPKVAYIDLQKN-HIAIIQDQT---FKFLEKLQTLDLRDN-ALTTIH 378 (844)
T ss_dssp ---TCSSCCEEEEESCC-CSCCC----SCSCSSCTTCCEEECCSC-CCCCCCSSC---SCSCCCCCEEEEETC-CSCCCS
T ss_pred ---CCCCCCEEECCCCC-CCccC----HHHhcCCCCCCEEECCCC-CCCccChhh---hcCCCCCCEEECCCC-CCCccc
Confidence 67777777777763 32221 123456677777777764 455444322 234667777777664 344432
Q ss_pred ChhhhhcccccceeeeccC
Q 013440 386 SFSMAKNLLRLQKVKVEDC 404 (443)
Q Consensus 386 ~~~~~~~~~~L~~L~i~~C 404 (443)
. +++|+.|++.++
T Consensus 379 ~------~~~L~~L~l~~N 391 (844)
T 3j0a_A 379 F------IPSIPDIFLSGN 391 (844)
T ss_dssp S------CCSCSEEEEESC
T ss_pred C------CCCcchhccCCC
Confidence 1 455556655544
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.4e-22 Score=198.92 Aligned_cols=322 Identities=14% Similarity=0.092 Sum_probs=234.9
Q ss_pred hhhhhhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccC
Q 013440 27 LEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR 106 (443)
Q Consensus 27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~ 106 (443)
+.+.+....++++++|++++|.+..++ ...+++|+.|++++|.. ..++ +.++++|++|++++|.++.+| ++.
T Consensus 54 l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l--~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~ 125 (457)
T 3bz5_A 54 ITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKL--TNLD---VTPLTKLTYLNCDTNKLTKLD--VSQ 125 (457)
T ss_dssp CCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC--SCCC---CTTCTTCCEEECCSSCCSCCC--CTT
T ss_pred cccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCC--ceee---cCCCCcCCEEECCCCcCCeec--CCC
Confidence 444556788899999999999998875 66899999999999996 4444 588999999999999999886 889
Q ss_pred CCCCcEEEecCCCCCCcccccCCCCCCEEEcCCC-CCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEc
Q 013440 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYS-NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (443)
Q Consensus 107 l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 185 (443)
+++|++|++++|.+..+ .++.+++|++|++++| .+..+ .+..+++|+.|++++|.+ ..++ +..+++|+.|++
T Consensus 126 l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l~---l~~l~~L~~L~l 198 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI-TELD---VSQNKLLNRLNC 198 (457)
T ss_dssp CTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-CCCC---CTTCTTCCEEEC
T ss_pred CCcCCEEECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-ceec---cccCCCCCEEEC
Confidence 99999999999998885 3788999999999999 55555 478899999999999754 4465 578999999999
Q ss_pred cCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccce-----
Q 013440 186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASR----- 260 (443)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~----- 260 (443)
++|.+... .++.+++|++|++++|.+..+| ...+++|+.+++..+...... ...+++|+
T Consensus 199 ~~N~l~~~-----------~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 199 DTNNITKL-----------DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCI 262 (457)
T ss_dssp CSSCCSCC-----------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECT
T ss_pred cCCcCCee-----------ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEecc
Confidence 99987542 3678899999999999998887 336689999999665544322 23444444
Q ss_pred -----eEEEcCccccccccccchhhHhhcccceeeccccCCccccccc------cccCCCCCCccEEEEecccCceeecc
Q 013440 261 -----LMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHE------LDDGEGFPRLKRLLVTDCSEILHIVG 329 (443)
Q Consensus 261 -----~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~l~~~~~ 329 (443)
.+++++|...+.++. . .+++|+.|++++|.....++.. +. +..+++|++|+++++ .++.+
T Consensus 263 ~n~L~~L~l~~n~~~~~~~~----~-~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~-l~~~~~L~~L~L~~N-~l~~l-- 333 (457)
T 3bz5_A 263 QTDLLEIDLTHNTQLIYFQA----E-GCRKIKELDVTHNTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNT-ELTEL-- 333 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEEC----T-TCTTCCCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCCEEECTTC-CCSCC--
T ss_pred CCCCCEEECCCCccCCcccc----c-ccccCCEEECCCCcccceeccCCCcceEec-hhhcccCCEEECCCC-ccccc--
Confidence 455555544333331 2 2389999999999876655431 11 345677777777776 33322
Q ss_pred cccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCccccc
Q 013440 330 SVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM 409 (443)
Q Consensus 330 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~ 409 (443)
....++.|+.|++++. .++. ++.|+.|.+.+ ..+... ..+..|..+++++-.--..
T Consensus 334 -----~l~~l~~L~~L~l~~N-~l~~-----------l~~L~~L~l~~-n~l~g~------~~~~~l~~l~l~~N~l~g~ 389 (457)
T 3bz5_A 334 -----DVSHNTKLKSLSCVNA-HIQD-----------FSSVGKIPALN-NNFEAE------GQTITMPKETLTNNSLTIA 389 (457)
T ss_dssp -----CCTTCTTCSEEECCSS-CCCB-----------CTTGGGSSGGG-TSEEEE------EEEEECCCBCCBTTBEEEE
T ss_pred -----ccccCCcCcEEECCCC-CCCC-----------ccccccccccC-CcEEec------ceeeecCccccccCcEEEE
Confidence 3567888888888874 3332 46677777655 233222 3566777787766532234
Q ss_pred ccc
Q 013440 410 IIG 412 (443)
Q Consensus 410 ~~~ 412 (443)
+|.
T Consensus 390 ip~ 392 (457)
T 3bz5_A 390 VSP 392 (457)
T ss_dssp CCT
T ss_pred cCh
Confidence 443
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.6e-23 Score=209.86 Aligned_cols=339 Identities=12% Similarity=0.039 Sum_probs=229.3
Q ss_pred cCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcE
Q 013440 35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT 112 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~ 112 (443)
..+++++|++++|.+..+++ ...+++|++|++++|.. ..++...|.++++|++|++++|.++.+|.. .+++|++
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKH 94 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSE
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccE
Confidence 34789999999999977764 34889999999999986 455444468899999999999999888876 7899999
Q ss_pred EEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCchhhcCCCCC--CEEeccCCcc--ccccchH-------------
Q 013440 113 LCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRL--QLLDLSNCWW--LEVIAPN------------- 172 (443)
Q Consensus 113 L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~------------- 172 (443)
|++++|.+.. +..++++++|++|++++|.++. ..+..+++| +.|++++|.+ ....|..
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 9999999875 4788899999999999988764 234555566 7777666544 2222211
Q ss_pred ------------------------------------------HhhcCC---------------------------CCcEE
Q 013440 173 ------------------------------------------VISKLS---------------------------QLEEL 183 (443)
Q Consensus 173 ------------------------------------------~l~~l~---------------------------~L~~L 183 (443)
.++.++ +|++|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 011122 34444
Q ss_pred EccCCCCCcccccCCCchhhhhc-----cCCC--------------------------CCCEEEeecCCCCCCCCccccc
Q 013440 184 YMGNGFSGWEKVEGGSNASLVEL-----ERLT--------------------------ELTTLEIEVPDAEILPPDFVSV 232 (443)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~l-----~~l~--------------------------~L~~L~l~~~~~~~~~~~~~~~ 232 (443)
++++|.+.+..+ ..+ +.++ +|+.|++++|.+...+....++
T Consensus 253 ~l~~n~l~~~~p--------~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~ 324 (520)
T 2z7x_B 253 SISNVKLQGQLD--------FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324 (520)
T ss_dssp EEEEEEEESCCC--------CCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred EeecccccCccc--------cchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence 444443322111 112 3333 3445555544443333112457
Q ss_pred cCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCC
Q 013440 233 ELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPR 312 (443)
Q Consensus 233 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~ 312 (443)
+|+.+++..+...... ...+..+++|+.|++++|.+......+..+.. +++|++|++++|.....++... ...+++
T Consensus 325 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l~~~~--~~~l~~ 400 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTV-FENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDEKKGD--CSWTKS 400 (520)
T ss_dssp CCCEEECCSSCCCTTT-TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCGGGCS--CCCCTT
T ss_pred cccEEEeECCccChhh-hhhhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCCcCCcccccch--hccCcc
Confidence 8888888665544321 23457899999999999887542222333443 3899999999988766455431 237899
Q ss_pred ccEEEEecccCceeecccccccccCcc-CcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhh
Q 013440 313 LKRLLVTDCSEILHIVGSVRRVRCEVF-PLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAK 391 (443)
Q Consensus 313 L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~ 391 (443)
|++|++++|.--..++ ..+ ++|+.|+++++ +++.++.. ...+++|++|++++| .++.+|.. ...
T Consensus 401 L~~L~Ls~N~l~~~~~--------~~l~~~L~~L~Ls~N-~l~~ip~~----~~~l~~L~~L~L~~N-~l~~l~~~-~~~ 465 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIF--------RCLPPRIKVLDLHSN-KIKSIPKQ----VVKLEALQELNVASN-QLKSVPDG-IFD 465 (520)
T ss_dssp CCEEECCSSCCCGGGG--------GSCCTTCCEEECCSS-CCCCCCGG----GGGCTTCCEEECCSS-CCCCCCTT-TTT
T ss_pred CCEEECcCCCCCcchh--------hhhcccCCEEECCCC-cccccchh----hhcCCCCCEEECCCC-cCCccCHH-Hhc
Confidence 9999999994222211 222 79999999996 67777654 346999999999996 77888753 457
Q ss_pred cccccceeeeccCcc
Q 013440 392 NLLRLQKVKVEDCDD 406 (443)
Q Consensus 392 ~~~~L~~L~i~~C~~ 406 (443)
.+++|+.|++.+++-
T Consensus 466 ~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPW 480 (520)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred cCCcccEEECcCCCC
Confidence 899999999988753
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=8.8e-23 Score=209.25 Aligned_cols=131 Identities=27% Similarity=0.301 Sum_probs=114.6
Q ss_pred ccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCC
Q 013440 34 TIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINL 110 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L 110 (443)
+.+..+++|++++|.++.+++. .++++|++|++++|.+ ..++...|.++++|++|++++|.++.+|. .|.++++|
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 4567899999999999888753 4899999999999985 77777778999999999999999999774 58999999
Q ss_pred cEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCC--CCchhhcCCCCCCEEeccCCccc
Q 013440 111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWL 166 (443)
Q Consensus 111 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~ 166 (443)
++|++++|.+.. + ..++++++|++|++++|.++ .+|..+.++++|++|++++|.+.
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 999999999988 3 56899999999999999887 45778899999999999987543
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=6e-23 Score=207.53 Aligned_cols=352 Identities=15% Similarity=0.063 Sum_probs=238.2
Q ss_pred hhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccc
Q 013440 27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL 104 (443)
Q Consensus 27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l 104 (443)
+...+. ...+++++|++++|.+..+++ ..++++|++|++++|.. ..++...|.++++|++|++++|.++.+|..
T Consensus 43 L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 118 (562)
T 3a79_B 43 LTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQNISCC- 118 (562)
T ss_dssp CCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCEECSC-
T ss_pred CccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCccCcc-
Confidence 444443 345899999999999988874 34899999999999986 555555568999999999999999999877
Q ss_pred cCCCCCcEEEecCCCCCC---cccccCCCCCCEEEcCCCCCCCCchhhcCCCCC--CEEeccCCcc--ccccchHHhh--
Q 013440 105 GRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRL--QLLDLSNCWW--LEVIAPNVIS-- 175 (443)
Q Consensus 105 ~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~~l~-- 175 (443)
.+++|++|++++|.+.. +..++++++|++|++++|.++.. .+..+++| +.|++++|.+ ....+.. +.
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~~l 194 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETES-LQIP 194 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCE-EEEC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccc-cccc
Confidence 89999999999999877 36899999999999999988742 34445555 8888887655 2222211 11
Q ss_pred ------------------------cCC-----------------------------------------------------
Q 013440 176 ------------------------KLS----------------------------------------------------- 178 (443)
Q Consensus 176 ------------------------~l~----------------------------------------------------- 178 (443)
.++
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 274 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence 122
Q ss_pred --CCcEEEccCCCCCcccccCCCc-----------------------hhhhhccCCCCCCEEEeecCCCCCCCCcccccc
Q 013440 179 --QLEELYMGNGFSGWEKVEGGSN-----------------------ASLVELERLTELTTLEIEVPDAEILPPDFVSVE 233 (443)
Q Consensus 179 --~L~~L~l~~~~~~~~~~~~~~~-----------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 233 (443)
+|++|++++|.+....+..... .....+-...+|++|++++|.+...+....+++
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~ 354 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCC
Confidence 3444444444433221100000 000000011346666666666544332124578
Q ss_pred CcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCCCc
Q 013440 234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRL 313 (443)
Q Consensus 234 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L 313 (443)
|+.+++..+..... ....+..+++|+.|++++|.+......+..+.. +++|+.|++++|.....++... ...+++|
T Consensus 355 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~--~~~l~~L 430 (562)
T 3a79_B 355 FTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-MSSLETLDVSLNSLNSHAYDRT--CAWAESI 430 (562)
T ss_dssp CCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-CTTCCEEECTTSCCBSCCSSCC--CCCCTTC
T ss_pred ceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcC-CCCCCEEECCCCcCCCccChhh--hcCcccC
Confidence 88888865554432 123457889999999999877542222222333 3899999999988765444332 2378999
Q ss_pred cEEEEecccCceeecccccccccCcc-CcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhc
Q 013440 314 KRLLVTDCSEILHIVGSVRRVRCEVF-PLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKN 392 (443)
Q Consensus 314 ~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~ 392 (443)
++|++++|. ++.. ....+ ++|+.|+++++ +++.++.. ...+++|++|+++++ .++.+|.. ....
T Consensus 431 ~~L~l~~n~-l~~~-------~~~~l~~~L~~L~L~~N-~l~~ip~~----~~~l~~L~~L~L~~N-~l~~l~~~-~~~~ 495 (562)
T 3a79_B 431 LVLNLSSNM-LTGS-------VFRCLPPKVKVLDLHNN-RIMSIPKD----VTHLQALQELNVASN-QLKSVPDG-VFDR 495 (562)
T ss_dssp CEEECCSSC-CCGG-------GGSSCCTTCSEEECCSS-CCCCCCTT----TTSSCCCSEEECCSS-CCCCCCTT-STTT
T ss_pred CEEECCCCC-CCcc-------hhhhhcCcCCEEECCCC-cCcccChh----hcCCCCCCEEECCCC-CCCCCCHH-HHhc
Confidence 999999994 3211 11233 69999999986 78877654 336899999999984 67788753 3578
Q ss_pred ccccceeeeccCc
Q 013440 393 LLRLQKVKVEDCD 405 (443)
Q Consensus 393 ~~~L~~L~i~~C~ 405 (443)
+++|+.|++.+++
T Consensus 496 l~~L~~L~l~~N~ 508 (562)
T 3a79_B 496 LTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCCCEECCSCC
T ss_pred CCCCCEEEecCCC
Confidence 8999999998875
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=1.5e-22 Score=190.74 Aligned_cols=291 Identities=15% Similarity=0.110 Sum_probs=175.3
Q ss_pred CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEE
Q 013440 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (443)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~ 136 (443)
+++.++++++.. ..+|..+ .+.|++|++++|.++.++ ..+..+++|++|++++|.+.. +..++++++|++|+
T Consensus 34 ~l~~l~~~~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGL--KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCC--SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCc--cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 577777777764 5566543 357777788777777653 467777778888887777766 46677778888888
Q ss_pred cCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEE
Q 013440 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (443)
Q Consensus 137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (443)
+++|.++.+|..+. ++|++|++++|.+ ..++...+..+++|+.|++++|.+..... ....++.+ +|++|+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGF------EPGAFDGL-KLNYLR 178 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGS------CTTSSCSC-CCSCCB
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCC------CcccccCC-ccCEEE
Confidence 88877777776554 6788888877544 34554446777888888887776643111 11345555 788888
Q ss_pred eecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCC
Q 013440 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (443)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 296 (443)
+++|.+..+|.... + +|+.|++++|.+.... +..+..+ ++|+.|++++|..
T Consensus 179 l~~n~l~~l~~~~~-~-------------------------~L~~L~l~~n~i~~~~--~~~l~~l-~~L~~L~L~~N~l 229 (332)
T 2ft3_A 179 ISEAKLTGIPKDLP-E-------------------------TLNELHLDHNKIQAIE--LEDLLRY-SKLYRLGLGHNQI 229 (332)
T ss_dssp CCSSBCSSCCSSSC-S-------------------------SCSCCBCCSSCCCCCC--TTSSTTC-TTCSCCBCCSSCC
T ss_pred CcCCCCCccCcccc-C-------------------------CCCEEECCCCcCCccC--HHHhcCC-CCCCEEECCCCcC
Confidence 88887776665421 3 3444444444332211 1112222 5666666666654
Q ss_pred ccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccc---cccccccee
Q 013440 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRED---QSFSNLRII 373 (443)
Q Consensus 297 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~---~~~~~L~~L 373 (443)
....+..+. .+++|++|++++| .++.++ .....++.|+.|+++++ .++.++...+... ..++.|+.|
T Consensus 230 ~~~~~~~~~---~l~~L~~L~L~~N-~l~~lp-----~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L 299 (332)
T 2ft3_A 230 RMIENGSLS---FLPTLRELHLDNN-KLSRVP-----AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGI 299 (332)
T ss_dssp CCCCTTGGG---GCTTCCEEECCSS-CCCBCC-----TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred CcCChhHhh---CCCCCCEEECCCC-cCeecC-----hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccce
Confidence 433322232 5677777777776 344443 12455677777777764 5666654333211 125778888
Q ss_pred eeccCcCcc-cccChhhhhcccccceeeeccCc
Q 013440 374 NVDSCRKLK-YLFSFSMAKNLLRLQKVKVEDCD 405 (443)
Q Consensus 374 ~i~~c~~l~-~~~~~~~~~~~~~L~~L~i~~C~ 405 (443)
++.+++... .+++ .....++.|+.+++.++.
T Consensus 300 ~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 300 SLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred EeecCcccccccCc-ccccccchhhhhhccccc
Confidence 888876432 2332 445678888888887764
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=6.3e-22 Score=186.37 Aligned_cols=291 Identities=16% Similarity=0.145 Sum_probs=160.8
Q ss_pred CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecCCCCCC--cccccCCCCCCEEE
Q 013440 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (443)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~ 136 (443)
+++.++++++.. ..+|..+ .+.+++|++++|.++.++. .++.+++|++|++++|.+.. +..++++++|++|+
T Consensus 32 ~l~~l~~~~~~l--~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGL--EKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCC--CSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCc--cccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 566666666653 4455432 3567777777777766553 56677777777777777666 45667777777777
Q ss_pred cCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEE
Q 013440 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (443)
Q Consensus 137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (443)
+++|.++.+|..+. ++|+.|++++|.+. .++...+..+++|+.|++++|.+..... ....++.+++|++|+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGI------ENGAFQGMKKLSYIR 177 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGB------CTTGGGGCTTCCEEE
T ss_pred CCCCcCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCc------ChhhccCCCCcCEEE
Confidence 77777776666544 67777777775443 4444446777777777777776643211 124567777888888
Q ss_pred eecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCC
Q 013440 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (443)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 296 (443)
+++|.+..+|.... ++|+.+ ++++|.+.... +..+..+ ++|+.|++++|..
T Consensus 178 l~~n~l~~l~~~~~-~~L~~L-------------------------~l~~n~l~~~~--~~~~~~l-~~L~~L~Ls~n~l 228 (330)
T 1xku_A 178 IADTNITTIPQGLP-PSLTEL-------------------------HLDGNKITKVD--AASLKGL-NNLAKLGLSFNSI 228 (330)
T ss_dssp CCSSCCCSCCSSCC-TTCSEE-------------------------ECTTSCCCEEC--TGGGTTC-TTCCEEECCSSCC
T ss_pred CCCCccccCCcccc-ccCCEE-------------------------ECCCCcCCccC--HHHhcCC-CCCCEEECCCCcC
Confidence 88887776665421 344444 44443332111 1112221 4555555555543
Q ss_pred ccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccc---ccccccccee
Q 013440 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE---DQSFSNLRII 373 (443)
Q Consensus 297 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~~~L~~L 373 (443)
....+..+. .+++|++|++++| .++.++ .....++.|+.|+++++ .++.++...+.. ....+.|+.+
T Consensus 229 ~~~~~~~~~---~l~~L~~L~L~~N-~l~~lp-----~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 229 SAVDNGSLA---NTPHLRELHLNNN-KLVKVP-----GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp CEECTTTGG---GSTTCCEEECCSS-CCSSCC-----TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred ceeChhhcc---CCCCCCEEECCCC-cCccCC-----hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccce
Confidence 332222222 4556666666665 233332 12344566666666653 455554332211 1124667777
Q ss_pred eeccCcCcc-cccChhhhhcccccceeeeccC
Q 013440 374 NVDSCRKLK-YLFSFSMAKNLLRLQKVKVEDC 404 (443)
Q Consensus 374 ~i~~c~~l~-~~~~~~~~~~~~~L~~L~i~~C 404 (443)
++.+.+--. .+++ .....++.++.++++++
T Consensus 299 ~l~~N~~~~~~i~~-~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 299 SLFSNPVQYWEIQP-STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSSSCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred EeecCcccccccCc-cccccccceeEEEeccc
Confidence 777655322 1222 33455677777777654
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=2.9e-21 Score=189.34 Aligned_cols=303 Identities=19% Similarity=0.149 Sum_probs=184.4
Q ss_pred CCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEe
Q 013440 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (443)
Q Consensus 36 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l 115 (443)
+++++.|++++|.+..+|.. .++|+.|++++|.. ..++. -.++|++|++++|.++.+| .++.+++|++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l--~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNL--KALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCC--SCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCCcc--CcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence 45677777777777666543 36777777777764 33332 1257778888888777777 4777788888888
Q ss_pred cCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccc
Q 013440 116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (443)
Q Consensus 116 ~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (443)
++|.+.. +.. ..+|++|++++|.++.+| .++++++|+.|++++|.+. .+|. ...+|++|++++|.+...
T Consensus 161 ~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~n~l~~l- 230 (454)
T 1jl5_A 161 DNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPD----LPLSLESIVAGNNILEEL- 230 (454)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSSC-
T ss_pred CCCcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC-cCCC----CcCcccEEECcCCcCCcc-
Confidence 8877766 322 247788888888777776 5777888888888775543 3443 124777888877766421
Q ss_pred ccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccccc
Q 013440 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQ 274 (443)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 274 (443)
..++.+++|++|++++|.+..+|. ..++|+.+++..+...... ..+++|+.|++++|.+.+...
T Consensus 231 ---------p~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~l~-----~~~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 231 ---------PELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp ---------CCCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSEESC
T ss_pred ---------cccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCcccccC-----cccCcCCEEECcCCccCcccC
Confidence 236678888888888888877765 3478888888655444322 234778888888876643211
Q ss_pred ccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccc
Q 013440 275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE 354 (443)
Q Consensus 275 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 354 (443)
. .++|+.|++++|.... ++. ..++|++|+++++ .++.++ ..+++|+.|+++++ .++
T Consensus 295 ~-------~~~L~~L~l~~N~l~~-i~~------~~~~L~~L~Ls~N-~l~~lp--------~~~~~L~~L~L~~N-~l~ 350 (454)
T 1jl5_A 295 L-------PPNLYYLNASSNEIRS-LCD------LPPSLEELNVSNN-KLIELP--------ALPPRLERLIASFN-HLA 350 (454)
T ss_dssp C-------CTTCCEEECCSSCCSE-ECC------CCTTCCEEECCSS-CCSCCC--------CCCTTCCEEECCSS-CCS
T ss_pred c-------CCcCCEEECcCCcCCc-ccC------CcCcCCEEECCCC-cccccc--------ccCCcCCEEECCCC-ccc
Confidence 1 1578888887765432 111 1247888888877 344332 23578888888875 555
Q ss_pred ccccccccccccccccceeeeccCcCcccccC-hhhhhcc-------------cccceeeeccCc
Q 013440 355 TICYSQLREDQSFSNLRIINVDSCRKLKYLFS-FSMAKNL-------------LRLQKVKVEDCD 405 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~-------------~~L~~L~i~~C~ 405 (443)
.++. .+++|++|+++++. ++.++. ...+.++ ++|+.|+++++.
T Consensus 351 ~lp~-------~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 351 EVPE-------LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CCCC-------CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC---------------------
T ss_pred cccc-------hhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 5443 36788888887753 333221 0122334 678888887764
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=1.6e-21 Score=191.20 Aligned_cols=311 Identities=13% Similarity=0.110 Sum_probs=208.9
Q ss_pred CCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEe
Q 013440 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (443)
Q Consensus 36 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l 115 (443)
.++++.|++++|.+..++... ++|++|++++|.. ..+|. +.++++|++|++++|.++.+|..+ .+|++|++
T Consensus 110 ~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l--~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L 180 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQL--EKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAA 180 (454)
T ss_dssp CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCC--SSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEEC
T ss_pred cCCCcEEECCCCccCcccCCC--CCCCEEECcCCCC--CCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEEC
Confidence 478999999999998776543 7999999999986 45773 689999999999999999888654 59999999
Q ss_pred cCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (443)
Q Consensus 116 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (443)
++|.+..++.++++++|++|++++|.++.+|... ++|+.|++++|.+. .+|. ++.+++|++|++++|.+...+.
T Consensus 181 ~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 181 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCCS
T ss_pred cCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCcccc
Confidence 9999988557999999999999999998877543 58999999997554 7774 7899999999999998764321
Q ss_pred cCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccc
Q 013440 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE 275 (443)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (443)
.+++|++|++++|.+..+|.. .++|+.+++..+...... ...++|+.|++++|.+.+...
T Consensus 255 ------------~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N~l~~i~~- 314 (454)
T 1jl5_A 255 ------------LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNEIRSLCD- 314 (454)
T ss_dssp ------------CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEES-----CCCTTCCEEECCSSCCSEECC-
T ss_pred ------------cccccCEEECCCCcccccCcc--cCcCCEEECcCCccCccc-----CcCCcCCEEECcCCcCCcccC-
Confidence 247899999999999888764 488999999655443321 223789999999987744211
Q ss_pred cchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccc
Q 013440 276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET 355 (443)
Q Consensus 276 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 355 (443)
..++|+.|++++|.... ++. .+++|++|++++| .++.++ . .+++|+.|+++++ .++.
T Consensus 315 ------~~~~L~~L~Ls~N~l~~-lp~------~~~~L~~L~L~~N-~l~~lp------~--~l~~L~~L~L~~N-~l~~ 371 (454)
T 1jl5_A 315 ------LPPSLEELNVSNNKLIE-LPA------LPPRLERLIASFN-HLAEVP------E--LPQNLKQLHVEYN-PLRE 371 (454)
T ss_dssp ------CCTTCCEEECCSSCCSC-CCC------CCTTCCEEECCSS-CCSCCC------C--CCTTCCEEECCSS-CCSS
T ss_pred ------CcCcCCEEECCCCcccc-ccc------cCCcCCEEECCCC-cccccc------c--hhhhccEEECCCC-CCCc
Confidence 12589999999876543 333 4689999999998 455554 2 5789999999985 5555
Q ss_pred cccccccccccc-------------cccceeeeccCcCcccccChhhhhcccccceeeeccCccccccc
Q 013440 356 ICYSQLREDQSF-------------SNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII 411 (443)
Q Consensus 356 ~~~~~~~~~~~~-------------~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~ 411 (443)
++.-+. ....+ ++|+.|+++++ .++.++.. + ++++.|.+.+|.-...++
T Consensus 372 l~~ip~-~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~i---P--~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 372 FPDIPE-SVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPDI---P--ESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp CCCCCT-TCCEEECCC-----------------------------------------------------
T ss_pred CCCChH-HHHhhhhcccccccccccCcCCEEECCCC-cCCccccc---h--hhHhheeCcCcccCCccc
Confidence 321100 01222 78999999885 45443211 1 457778887775444433
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=1.3e-20 Score=193.18 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=123.9
Q ss_pred EEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecCCC
Q 013440 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCE 119 (443)
Q Consensus 41 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~ 119 (443)
+.+-.+.++..+|... .+.+++|++++|.+ ..++...|.++++|++|++++|.++.+++ .|.++++|++|++++|.
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 4455555677777643 24799999999995 77777667999999999999999999764 68999999999999999
Q ss_pred CCC-c-ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCcccc-ccchHHhhcCCCCcEEEccCCCCCcc
Q 013440 120 LAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWE 193 (443)
Q Consensus 120 l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (443)
+.. + ..++++.+|++|++++|.++.+|.. ++++++|+.|++++|.+.. ..|.. +..+++|++|++++|.+...
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccccc
Confidence 988 3 6689999999999999999988764 8999999999999976544 34443 78899999999999876544
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.8e-22 Score=188.50 Aligned_cols=246 Identities=14% Similarity=0.109 Sum_probs=167.8
Q ss_pred CCCcEEEcccCCCCCc--cCcHHHHhcCCCCCEEEcCC-Cccc-cccccccCCCCCcEEEecCCCCCC--cccccCCCCC
Q 013440 59 PNLQLFLLYTEGNGPM--QVSDHFFEGMEGLKVLQFPG-IGSS-SLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKL 132 (443)
Q Consensus 59 ~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~~p~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L 132 (443)
.+++.|+++++.. .. .+|..+ .++++|++|++++ |.+. .+|..++.+++|++|++++|.+.. +..++++++|
T Consensus 50 ~~l~~L~L~~~~l-~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNL-PKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCC-SSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCc-cCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 5788889988886 44 566654 7889999999984 7776 478888889999999999888874 6778888899
Q ss_pred CEEEcCCCCCC-CCchhhcCCCCCCEEeccCCccccccchHHhhcCC-CCcEEEccCCCCCcccccCCCchhhhhccCCC
Q 013440 133 EILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSGWEKVEGGSNASLVELERLT 210 (443)
Q Consensus 133 ~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 210 (443)
++|++++|.++ .+|..+.++++|++|++++|.+.+.+|.. +..++ +|+.|++++|.+....+ ..++.++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~--------~~~~~l~ 198 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP--------PTFANLN 198 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC--------GGGGGCC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC--------hHHhCCc
Confidence 99999988887 67888888889999998887776677765 67776 88888888887765444 5566665
Q ss_pred CCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceee
Q 013440 211 ELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLW 290 (443)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 290 (443)
|++|++++|.+...+.. .+..+++|+.|++++|.+....+. +. .+++|++|+
T Consensus 199 -L~~L~Ls~N~l~~~~~~-----------------------~~~~l~~L~~L~L~~N~l~~~~~~---~~-~l~~L~~L~ 250 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASV-----------------------LFGSDKNTQKIHLAKNSLAFDLGK---VG-LSKNLNGLD 250 (313)
T ss_dssp -CSEEECCSSEEEECCGG-----------------------GCCTTSCCSEEECCSSEECCBGGG---CC-CCTTCCEEE
T ss_pred -ccEEECcCCcccCcCCH-----------------------HHhcCCCCCEEECCCCceeeecCc---cc-ccCCCCEEE
Confidence 88888887766432221 124456666666666655433222 11 125667777
Q ss_pred ccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccc
Q 013440 291 LETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTN 352 (443)
Q Consensus 291 L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 352 (443)
+++|.....++..+. .+++|++|++++|.--..++ ....+++|+.|++.+.+.
T Consensus 251 Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~ip------~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 251 LRNNRIYGTLPQGLT---QLKFLHSLNVSFNNLCGEIP------QGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCSSCCEECCCGGGG---GCTTCCEEECCSSEEEEECC------CSTTGGGSCGGGTCSSSE
T ss_pred CcCCcccCcCChHHh---cCcCCCEEECcCCcccccCC------CCccccccChHHhcCCCC
Confidence 766665544444443 56677777777663222222 224556666666665543
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=8.1e-21 Score=178.75 Aligned_cols=291 Identities=13% Similarity=0.098 Sum_probs=204.1
Q ss_pred CCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEec
Q 013440 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLD 116 (443)
Q Consensus 38 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~ 116 (443)
+++.+++.++.+..+|... .+.++.|++++|.. ..++...|.++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6889999999998887644 47899999999986 566665578999999999999999886 7889999999999999
Q ss_pred CCCCCC-cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCcccc--ccchHHhhcCCCCcEEEccCCCCCc
Q 013440 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLE--VIAPNVISKLSQLEELYMGNGFSGW 192 (443)
Q Consensus 117 ~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (443)
+|.+.. +..+. ++|++|++++|.++.++. .+.++++|+.|++++|.... ..+. .+..+++|++|++++|.+..
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCEEECCCCcccc
Confidence 999887 44433 799999999999997765 48999999999999976643 3333 47899999999999998765
Q ss_pred ccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccc
Q 013440 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI 272 (443)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 272 (443)
.+. .+ .++|++|++++|.+..++.. .+..+++|+.|++++|.+...
T Consensus 186 l~~---------~~--~~~L~~L~l~~n~l~~~~~~-----------------------~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 186 IPQ---------GL--PPSLTELHLDGNKITKVDAA-----------------------SLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp CCS---------SC--CTTCSEEECTTSCCCEECTG-----------------------GGTTCTTCCEEECCSSCCCEE
T ss_pred CCc---------cc--cccCCEEECCCCcCCccCHH-----------------------HhcCCCCCCEEECCCCcCcee
Confidence 432 11 27899999999988655432 124456666677777655332
Q ss_pred ccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccc--cccCccCcccceecccc
Q 013440 273 LQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRR--VRCEVFPLLEALSLMFL 350 (443)
Q Consensus 273 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~~~L~~L~l~~c 350 (443)
. +..+.. +++|++|++++|... .++..+ ..+++|++|++++| .++.++..... .....++.|+.|++.+.
T Consensus 232 ~--~~~~~~-l~~L~~L~L~~N~l~-~lp~~l---~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 232 D--NGSLAN-TPHLRELHLNNNKLV-KVPGGL---ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp C--TTTGGG-STTCCEEECCSSCCS-SCCTTT---TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred C--hhhccC-CCCCCEEECCCCcCc-cCChhh---ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecC
Confidence 2 122333 377888888887544 444433 37888888888887 45554322110 01123577888888875
Q ss_pred ccccccccccccccccccccceeeeccC
Q 013440 351 TNLETICYSQLREDQSFSNLRIINVDSC 378 (443)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~L~~L~i~~c 378 (443)
+ +......+-. ...+++++.++++++
T Consensus 304 ~-~~~~~i~~~~-f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 304 P-VQYWEIQPST-FRCVYVRAAVQLGNY 329 (330)
T ss_dssp S-SCGGGSCGGG-GTTCCCGGGEEC---
T ss_pred c-ccccccCccc-cccccceeEEEeccc
Confidence 4 3322211111 234667777777664
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=3.2e-22 Score=186.78 Aligned_cols=192 Identities=15% Similarity=0.208 Sum_probs=160.9
Q ss_pred CCCeEEeCCCCCCC---CCCCcC-CCCCCcEEEccc-CCCCCccCcHHHHhcCCCCCEEEcCCCccc-cccccccCCCCC
Q 013440 37 KDPIAISLPHRDIQ---ELPERL-QCPNLQLFLLYT-EGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLINL 110 (443)
Q Consensus 37 ~~l~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~p~~l~~l~~L 110 (443)
.++++|+++++.+. .+|... ++++|++|++++ |.. ...+|..+ .++++|++|++++|.++ .+|..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-cccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 67999999999996 466655 899999999995 765 55677764 89999999999999998 588999999999
Q ss_pred cEEEecCCCCCC--cccccCCCCCCEEEcCCCCCC-CCchhhcCCC-CCCEEeccCCccccccchHHhhcCCCCcEEEcc
Q 013440 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLT-RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (443)
Q Consensus 111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 186 (443)
++|++++|.+.. +..++.+++|++|++++|.++ .+|..+.+++ +|+.|++++|.+.+..|.. +..+. |+.|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence 999999999885 688999999999999999998 7899999998 9999999998887778875 67777 9999999
Q ss_pred CCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEE
Q 013440 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIR 240 (443)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~ 240 (443)
+|.+....+ ..++.+++|+.|++++|.+...+..+ .+++|+.+++.
T Consensus 206 ~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 206 RNMLEGDAS--------VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252 (313)
T ss_dssp SSEEEECCG--------GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECC
T ss_pred CCcccCcCC--------HHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECc
Confidence 998876554 67889999999999999886433322 23455555443
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=2.2e-21 Score=182.75 Aligned_cols=291 Identities=13% Similarity=0.112 Sum_probs=199.6
Q ss_pred CCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEec
Q 013440 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLD 116 (443)
Q Consensus 38 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~ 116 (443)
+++.+++.++.++.+|... .++++.|++++|.. ..++...|.++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5889999999998888755 47999999999986 556555568999999999999999885 7789999999999999
Q ss_pred CCCCCC-cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCcccc--ccchHHhhcCCCCcEEEccCCCCCc
Q 013440 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLE--VIAPNVISKLSQLEELYMGNGFSGW 192 (443)
Q Consensus 117 ~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (443)
+|.+.. +..+. ++|++|++++|.++.++.. +.++++|+.|++++|.+.. ..+. .+..+ +|+.|++++|.+..
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-cccCC-ccCEEECcCCCCCc
Confidence 999887 44443 8999999999999987764 8899999999999976642 3333 35666 89999999998765
Q ss_pred ccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccc
Q 013440 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI 272 (443)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 272 (443)
.+. .+ .++|++|++++|.+..++... +..+++|+.|++++|.+...
T Consensus 187 l~~---------~~--~~~L~~L~l~~n~i~~~~~~~-----------------------l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 187 IPK---------DL--PETLNELHLDHNKIQAIELED-----------------------LLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CCS---------SS--CSSCSCCBCCSSCCCCCCTTS-----------------------STTCTTCSCCBCCSSCCCCC
T ss_pred cCc---------cc--cCCCCEEECCCCcCCccCHHH-----------------------hcCCCCCCEEECCCCcCCcC
Confidence 432 12 268999999999887665321 13445566666666555322
Q ss_pred ccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeeccccccc--ccCccCcccceecccc
Q 013440 273 LQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRV--RCEVFPLLEALSLMFL 350 (443)
Q Consensus 273 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~c 350 (443)
. +..+.. +++|+.|++++|... .++..+. .+++|++|+++++ .++.++...... ....++.|+.|++.++
T Consensus 233 ~--~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~---~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 233 E--NGSLSF-LPTLRELHLDNNKLS-RVPAGLP---DLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp C--TTGGGG-CTTCCEEECCSSCCC-BCCTTGG---GCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred C--hhHhhC-CCCCCEEECCCCcCe-ecChhhh---cCccCCEEECCCC-CCCccChhHccccccccccccccceEeecC
Confidence 1 112332 367777777776543 4444343 6778888888877 354443211100 1122567888888876
Q ss_pred ccccccccccccccccccccceeeeccCc
Q 013440 351 TNLETICYSQLREDQSFSNLRIINVDSCR 379 (443)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~L~~L~i~~c~ 379 (443)
+ +......+.. ...+++|+.++++++.
T Consensus 305 ~-~~~~~~~~~~-~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 305 P-VPYWEVQPAT-FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp S-SCGGGSCGGG-GTTBCCSTTEEC----
T ss_pred c-ccccccCccc-ccccchhhhhhccccc
Confidence 4 3321111111 2457778888887764
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=6.5e-22 Score=188.07 Aligned_cols=195 Identities=18% Similarity=0.186 Sum_probs=138.4
Q ss_pred cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEE
Q 013440 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTL 113 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L 113 (443)
.++.....+.+++.++.+|... .++|++|++++|.. ..++...+.++++|++|++++|.++.+ |..+..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGL-TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTC-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcccccccc-cccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3344455677777777777643 35788888888875 555554567888888888888888775 4567888888888
Q ss_pred EecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCch--hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440 114 CLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (443)
Q Consensus 114 ~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 189 (443)
++++|.+.. + ..++++++|++|++++|.++.+|. .+.++++|+.|++++|.....++...+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 888888877 3 347788888888888888887776 577888888888888755555554446778888888888877
Q ss_pred CCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEE
Q 013440 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIR 240 (443)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~ 240 (443)
+....+ ..++.+++|++|++++|.+..++... .+++|+.+++.
T Consensus 186 l~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 186 LQSYEP--------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp CCEECT--------TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred cCccCH--------HHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 665443 56677777888888877776555432 12444444443
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=7.3e-22 Score=185.45 Aligned_cols=90 Identities=27% Similarity=0.376 Sum_probs=73.2
Q ss_pred cCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEecc
Q 013440 83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161 (443)
Q Consensus 83 ~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 161 (443)
....+++|++++|.++.+|..+..+++|++|++++|.+.. +..++++++|++|++++|.++.+|..+.++++|+.|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4578888888888888888888888888888888888777 667788888888888888888888888888888888888
Q ss_pred CCccccccchH
Q 013440 162 NCWWLEVIAPN 172 (443)
Q Consensus 162 ~~~~~~~~~~~ 172 (443)
+|+..+.+|..
T Consensus 159 ~n~~~~~~p~~ 169 (328)
T 4fcg_A 159 ACPELTELPEP 169 (328)
T ss_dssp EETTCCCCCSC
T ss_pred CCCCccccChh
Confidence 87777777654
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.8e-23 Score=206.19 Aligned_cols=359 Identities=16% Similarity=0.082 Sum_probs=204.5
Q ss_pred hccCCCCeEEeCCCCCCC-----CCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCC----CCCEEEcCCCccc----
Q 013440 33 ETIQKDPIAISLPHRDIQ-----ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGME----GLKVLQFPGIGSS---- 98 (443)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~---- 98 (443)
...++++++|++++|.+. .++... .+++|++|++++|.. .+..+..++..+. +|++|++++|.++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 445677888888888775 223322 678888888888875 3333445555566 6888888888876
Q ss_pred -cccccccCCCCCcEEEecCCCCCC--ccc-----ccCCCCCCEEEcCCCCCCC-----CchhhcCCCCCCEEeccCCcc
Q 013440 99 -SLPSSLGRLINLQTLCLDWCELAD--IAA-----IGQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWW 165 (443)
Q Consensus 99 -~~p~~l~~l~~L~~L~l~~~~l~~--~~~-----~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~ 165 (443)
.++..+..+++|++|++++|.+.+ +.. .....+|++|++++|.++. ++..+..+++|+.|++++|.+
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 256777788888888888888765 222 2235678888888887763 355566778888888888764
Q ss_pred ccccchHHh----hcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCC-----Ccc--ccccC
Q 013440 166 LEVIAPNVI----SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILP-----PDF--VSVEL 234 (443)
Q Consensus 166 ~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~--~~~~L 234 (443)
.+..+..+. ...++|++|++++|.+..... ......+..+++|++|++++|.+.... ... .+++|
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC----RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH----HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH----HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 443332211 135578888888886654321 112345667788888888888764321 111 24677
Q ss_pred cEEEEEecCCCCCC---CCchhcccccceeEEEcCccccccccccchhhHh----hcccceeeccccCCccc----cccc
Q 013440 235 QRYKIRIGDGPEDE---FDPLLVKSEASRLMMLKGIKKVSILQENDGTKML----LQRTEDLWLETLEGVQS----VVHE 303 (443)
Q Consensus 235 ~~l~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~~~~----~~~~ 303 (443)
+.+++..+...... ....+..+++|+.|++++|.+..... ..+... .++|++|++++|..... ++..
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA--RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH--HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH--HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence 77777544333211 11223456777777777765532211 111111 14777777777764432 2222
Q ss_pred cccCCCCCCccEEEEecccCceeeccccccccc-CccCcccceecccccccccccccccc-ccccccccceeeeccCcCc
Q 013440 304 LDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRC-EVFPLLEALSLMFLTNLETICYSQLR-EDQSFSNLRIINVDSCRKL 381 (443)
Q Consensus 304 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~-~~~~~~~L~~L~i~~c~~l 381 (443)
+. .+++|++|++++| .++........... ...+.|+.|++++| .+++.....++ ....+++|++|++++| .+
T Consensus 337 l~---~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i 410 (461)
T 1z7x_W 337 LA---QNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CL 410 (461)
T ss_dssp HH---HCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SC
T ss_pred Hh---hCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CC
Confidence 22 5677777777777 33321100000011 12567777777776 34421110111 0234677777777775 45
Q ss_pred ccccChhhhhcc----cccceeeeccC
Q 013440 382 KYLFSFSMAKNL----LRLQKVKVEDC 404 (443)
Q Consensus 382 ~~~~~~~~~~~~----~~L~~L~i~~C 404 (443)
++.+...+...+ .+|+.|.+.++
T Consensus 411 ~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 411 GDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp CHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred CHHHHHHHHHHhccCCcchhheeeccc
Confidence 544332333222 34666666554
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=4.5e-21 Score=180.06 Aligned_cols=219 Identities=21% Similarity=0.226 Sum_probs=100.7
Q ss_pred CCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEc
Q 013440 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSL 137 (443)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l 137 (443)
++++.|++++|.. ..+|..+ .++++|++|++++|.++.+|..++.+++|++|++++|.+.. +..++++++|++|++
T Consensus 81 ~~l~~L~L~~n~l--~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPL--PQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCC--SSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCc--hhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 3444444444443 2334332 23444444444444444444444444444444444444444 334444444444444
Q ss_pred CCCC-CCCCchhhc---------CCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc
Q 013440 138 AYSN-INQLPVEIG---------QLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE 207 (443)
Q Consensus 138 ~~~~-~~~lp~~~~---------~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 207 (443)
++|. ...+|..+. ++++|+.|++++|.+. .+|.. ++.+++|++|++++|.+...+ ..++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~N~l~~l~---------~~l~ 226 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLSALG---------PAIH 226 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-GGGCTTCCEEEEESSCCCCCC---------GGGG
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh-hcCCCCCCEEEccCCCCCcCc---------hhhc
Confidence 4432 223333332 2555555555553322 44433 445555555555555443221 2344
Q ss_pred CCCCCCEEEeecCCC-CCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhccc
Q 013440 208 RLTELTTLEIEVPDA-EILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRT 286 (443)
Q Consensus 208 ~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 286 (443)
.+++|++|++++|.. ..+|.. +..+++|+.|++++|+..+.++ ..+..+ ++|
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~------------------------~~~l~~L~~L~L~~n~~~~~~p--~~~~~l-~~L 279 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPI------------------------FGGRAPLKRLILKDCSNLLTLP--LDIHRL-TQL 279 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCC------------------------TTCCCCCCEEECTTCTTCCBCC--TTGGGC-TTC
T ss_pred cCCCCCEEECcCCcchhhhHHH------------------------hcCCCCCCEEECCCCCchhhcc--hhhhcC-CCC
Confidence 555555555555443 222221 1333444445555544433322 223322 566
Q ss_pred ceeeccccCCccccccccccCCCCCCccEEEEecc
Q 013440 287 EDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDC 321 (443)
Q Consensus 287 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 321 (443)
+.|++++|.....++..+. .+++|+.+.+...
T Consensus 280 ~~L~L~~n~~~~~iP~~l~---~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIA---QLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCCCCGGGG---GSCTTCEEECCGG
T ss_pred CEEeCCCCCchhhccHHHh---hccCceEEeCCHH
Confidence 6666666666666655554 6666666666644
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=3.9e-23 Score=210.33 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=82.2
Q ss_pred ccccceeEEEcCccccccccccchhhHhhcccceeecccc---CCcccc------ccccccCCCCCCccEEEEecccC-c
Q 013440 255 KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETL---EGVQSV------VHELDDGEGFPRLKRLLVTDCSE-I 324 (443)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~---~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~-l 324 (443)
.+++|+.|++..+.+.... ...+...+++|+.|+++++ ..+... ...+ ..+++|++|+++.|.+ +
T Consensus 376 ~~~~L~~L~l~~~~l~~~~--~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~---~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNES--LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL---IGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HCTTCSEEEEEESCCCHHH--HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH---HHCTTCCEEEEECCGGGC
T ss_pred hCccCeEEEeecCCccHHH--HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH---HhCCCCCEEEEecCCCCc
Confidence 4666777766544442211 1223333467777777642 233321 1112 2477788888876643 2
Q ss_pred eeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccC
Q 013440 325 LHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC 404 (443)
Q Consensus 325 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C 404 (443)
+ +.........+++|+.|++++|. +++.....+ ...+++|++|++++|+ +++.....+...+++|++|++++|
T Consensus 451 ~---~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 451 T---DLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEF--SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp C---HHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHH--HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred c---HHHHHHHHHhCccceEeeccCCC-CCHHHHHHH--HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence 1 11111122347888888888763 443221111 2457999999999998 666544456678899999999999
Q ss_pred ccccc
Q 013440 405 DDLKM 409 (443)
Q Consensus 405 ~~l~~ 409 (443)
. +++
T Consensus 524 ~-it~ 527 (592)
T 3ogk_B 524 R-ASM 527 (592)
T ss_dssp B-CCT
T ss_pred c-CCH
Confidence 7 553
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=9e-22 Score=200.26 Aligned_cols=351 Identities=14% Similarity=0.054 Sum_probs=231.7
Q ss_pred cCCCCeEEeCCCCCCCCCC-----CcC-CCCCCcEEEcccCCCCC---ccCcHHHHhcCCCCCEEEcCCCcccccccccc
Q 013440 35 IQKDPIAISLPHRDIQELP-----ERL-QCPNLQLFLLYTEGNGP---MQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLG 105 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~-----~~~-~~~~L~~L~l~~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~ 105 (443)
.++++++|++.+|.+.... ... .+++|+.|++++|.. . ......++.++++|++|++++|.+..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF-AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC-SSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC-CccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 5678888888888663221 122 678888888888775 2 12223345678888888888888888888888
Q ss_pred CCCCCcEEEecCCCCC----C-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCC
Q 013440 106 RLINLQTLCLDWCELA----D-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL 180 (443)
Q Consensus 106 ~l~~L~~L~l~~~~l~----~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 180 (443)
.+++|++|+++..... . ...+..+++|+.|+++++....+|..+..+++|+.|++++|.+........+..+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 8888888888754322 1 4667788899999998876667888888999999999999874444443446889999
Q ss_pred cEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeec-----------CCCCC--CCCcc-ccccCcEEEEEecCCCC
Q 013440 181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEV-----------PDAEI--LPPDF-VSVELQRYKIRIGDGPE 246 (443)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~--~~~~~-~~~~L~~l~l~~~~~~~ 246 (443)
++|++..+ +... ........+++|++|++.. +.+.. ++... .+++|+.+++.......
T Consensus 321 ~~L~L~~~-~~~~-------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 321 EVLETRNV-IGDR-------GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp CEEEEEGG-GHHH-------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred CEEeccCc-cCHH-------HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 99999833 2211 1223446789999999993 33322 11111 46899999995555433
Q ss_pred CCCCchh-cccccceeEEEcCcc---ccccccccc---hhhHhhcccceeeccccCC-ccccccccccCCCCCCccEEEE
Q 013440 247 DEFDPLL-VKSEASRLMMLKGIK---KVSILQEND---GTKMLLQRTEDLWLETLEG-VQSVVHELDDGEGFPRLKRLLV 318 (443)
Q Consensus 247 ~~~~~~~-~~~~~L~~L~l~~~~---~~~~~~~~~---~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~~l~~L~~L~l 318 (443)
.. ...+ ..+++|+.|++.++. .....+... .+...+++|++|+++.|.+ +.+...... ...+++|++|++
T Consensus 393 ~~-~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L 470 (592)
T 3ogk_B 393 ES-LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLL 470 (592)
T ss_dssp HH-HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEE
T ss_pred HH-HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeec
Confidence 22 1222 348899999997432 222211111 1223358999999987653 222211111 235899999999
Q ss_pred ecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccce
Q 013440 319 TDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQK 398 (443)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~ 398 (443)
++|. ++ +.+.......+++|+.|++++|+ +++.....+ ...+++|++|++++|. +++.+.......+|.+..
T Consensus 471 ~~n~-l~---~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~--~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 471 GYVG-ES---DEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAA--VTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp CSCC-SS---HHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHH--HHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEE
T ss_pred cCCC-CC---HHHHHHHHhcCcccCeeeccCCC-CcHHHHHHH--HHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEE
Confidence 9884 33 21222234678999999999997 544322111 2468999999999998 887766566677888777
Q ss_pred eeeccC
Q 013440 399 VKVEDC 404 (443)
Q Consensus 399 L~i~~C 404 (443)
..+...
T Consensus 543 ~~~~~~ 548 (592)
T 3ogk_B 543 ELIPSR 548 (592)
T ss_dssp EEECCC
T ss_pred EEecCc
Confidence 666544
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=1e-20 Score=176.04 Aligned_cols=240 Identities=20% Similarity=0.154 Sum_probs=144.1
Q ss_pred EEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc---cccccCCCCCcEEEecC
Q 013440 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL---PSSLGRLINLQTLCLDW 117 (443)
Q Consensus 41 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---p~~l~~l~~L~~L~l~~ 117 (443)
.+...++.++.+|... .++|+.|++++|.. ..++..+|.++++|++|++++|.++.. +..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 5566666666666533 35677777777764 466666566777777777777776543 45556677777777777
Q ss_pred CCCCC-cccccCCCCCCEEEcCCCCCCCCch--hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcc-
Q 013440 118 CELAD-IAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE- 193 (443)
Q Consensus 118 ~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~- 193 (443)
|.+.. +..+..+++|++|++++|.++.++. .+.++++|+.|++++|.+....+. .+..+++|++|++++|.+...
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGGE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCcccccc
Confidence 77666 5556677777777777777765543 566777777777777655444443 356677777777777765431
Q ss_pred cccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccc
Q 013440 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL 273 (443)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 273 (443)
.+ ..++.+++|++|++++|.+..++.. .+..+++|+.|++++|.+....
T Consensus 167 ~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~-----------------------~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 167 LP--------DIFTELRNLTFLDLSQCQLEQLSPT-----------------------AFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp EC--------SCCTTCTTCCEEECTTSCCCEECTT-----------------------TTTTCTTCCEEECTTSCCSBCC
T ss_pred ch--------hHHhhCcCCCEEECCCCCcCCcCHH-----------------------HhcCCCCCCEEECCCCccCccC
Confidence 22 4566677777777777766544221 1134455555555555442211
Q ss_pred cccchhhHhhcccceeeccccCCccccccccccCCCCC-CccEEEEecc
Q 013440 274 QENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFP-RLKRLLVTDC 321 (443)
Q Consensus 274 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~ 321 (443)
. ..+.. +++|+.|++++|......+..+. .++ +|++|+++++
T Consensus 216 ~--~~~~~-l~~L~~L~L~~N~l~~~~~~~~~---~~~~~L~~L~L~~N 258 (306)
T 2z66_A 216 T--FPYKC-LNSLQVLDYSLNHIMTSKKQELQ---HFPSSLAFLNLTQN 258 (306)
T ss_dssp S--GGGTT-CTTCCEEECTTSCCCBCSSSSCC---CCCTTCCEEECTTC
T ss_pred h--hhccC-cccCCEeECCCCCCcccCHHHHH---hhhccCCEEEccCC
Confidence 1 11221 25666666666654443333332 443 6777777766
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=2e-20 Score=174.18 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=180.4
Q ss_pred ccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCC-ccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCC
Q 013440 34 TIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGP-MQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L 110 (443)
...+++++|+++++.++.++.. .++++|+.|++++|.... ...+..+ .++++|++|++++|.++.+|..+..+++|
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCC
Confidence 4567899999999999888874 389999999999998611 1224554 67999999999999999999889999999
Q ss_pred cEEEecCCCCCC-c--ccccCCCCCCEEEcCCCCCCC-CchhhcCCCCCCEEeccCCcccc-ccchHHhhcCCCCcEEEc
Q 013440 111 QTLCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYM 185 (443)
Q Consensus 111 ~~L~l~~~~l~~-~--~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l 185 (443)
++|++++|.+.. + ..+..+++|++|++++|.++. .+..+..+++|+.|++++|.+.+ ..|.. +..+++|++|++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEEC
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcCCCEEEC
Confidence 999999999877 3 578899999999999998884 55668899999999999987665 35543 789999999999
Q ss_pred cCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhccc-ccceeE
Q 013440 186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKS-EASRLM 262 (443)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L 262 (443)
++|.+....+ ..++.+++|++|++++|.+..++... .+++|+.+++..+....... ..+..+ ++|+.|
T Consensus 183 s~n~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~L 253 (306)
T 2z66_A 183 SQCQLEQLSP--------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-QELQHFPSSLAFL 253 (306)
T ss_dssp TTSCCCEECT--------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS-SSCCCCCTTCCEE
T ss_pred CCCCcCCcCH--------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH-HHHHhhhccCCEE
Confidence 9998876554 67888999999999999998776643 34778888875554433221 122344 477788
Q ss_pred EEcCcccccc
Q 013440 263 MLKGIKKVSI 272 (443)
Q Consensus 263 ~l~~~~~~~~ 272 (443)
++++|.+...
T Consensus 254 ~L~~N~~~~~ 263 (306)
T 2z66_A 254 NLTQNDFACT 263 (306)
T ss_dssp ECTTCCEECS
T ss_pred EccCCCeecc
Confidence 8888776443
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=1.2e-20 Score=173.85 Aligned_cols=219 Identities=18% Similarity=0.162 Sum_probs=135.9
Q ss_pred eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCC
Q 013440 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (443)
Q Consensus 40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~ 118 (443)
+.++..++.++.+|.. ..++|+.|++++|.. ..++...|.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 5666666666666543 245777777777774 445544456777777777777777664 566777777777777777
Q ss_pred C-CCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccc
Q 013440 119 E-LAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (443)
Q Consensus 119 ~-l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (443)
. +.. +..+..+++|++|++++|.++.+ |..+.++++|+.|++++|.+. .++...+..+++|++|++++|.+....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccC
Confidence 6 555 45667777777777777777755 444667777777777775443 444333667777777777777665443
Q ss_pred ccCCCchhhhhccCCCCCCEEEeecCCCCCC-CCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccc
Q 013440 195 VEGGSNASLVELERLTELTTLEIEVPDAEIL-PPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS 271 (443)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (443)
. ..+..+++|++|++++|.+..+ |..+ .+++|+.+++..+...... ...+..+++|+.|++++|....
T Consensus 170 ~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 170 E--------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp T--------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSCEEC
T ss_pred H--------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHHcccCcccCEEeccCCCccC
Confidence 3 3466677777777777776544 2222 2345555555433322211 1224556666666666665543
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=178.20 Aligned_cols=260 Identities=15% Similarity=0.140 Sum_probs=188.8
Q ss_pred hhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-
Q 013440 27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS- 103 (443)
Q Consensus 27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~- 103 (443)
+.+.+. +..+++++|+++++.++.++. ..++++|+.|++++|.. ..++...|.++++|++|++++|.++.+|..
T Consensus 43 l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 119 (353)
T 2z80_A 43 LNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119 (353)
T ss_dssp CSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred cccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence 444443 355799999999999988776 34899999999999986 555555568999999999999999998866
Q ss_pred ccCCCCCcEEEecCCCCCC-cc--cccCCCCCCEEEcCCC-CCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCC
Q 013440 104 LGRLINLQTLCLDWCELAD-IA--AIGQLKKLEILSLAYS-NINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178 (443)
Q Consensus 104 l~~l~~L~~L~l~~~~l~~-~~--~~~~l~~L~~L~l~~~-~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 178 (443)
++.+++|++|++++|.+.. +. .++.+++|++|++++| .++.+ +..+.++++|+.|++++|.+.+..+.. +..++
T Consensus 120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~ 198 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQ 198 (353)
T ss_dssp HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCS
T ss_pred hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH-Hhccc
Confidence 8899999999999999888 33 6889999999999999 57765 456899999999999998766655654 78999
Q ss_pred CCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhccccc
Q 013440 179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEA 258 (443)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 258 (443)
+|++|++++|.+..... ..++.+++|++|++++|.+..++.... . .......
T Consensus 199 ~L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L~L~~n~l~~~~~~~l----~----------------~~~~~~~ 250 (353)
T 2z80_A 199 NVSHLILHMKQHILLLE--------IFVDVTSSVECLELRDTDLDTFHFSEL----S----------------TGETNSL 250 (353)
T ss_dssp EEEEEEEECSCSTTHHH--------HHHHHTTTEEEEEEESCBCTTCCCC--------------------------CCCC
T ss_pred cCCeecCCCCccccchh--------hhhhhcccccEEECCCCcccccccccc----c----------------cccccch
Confidence 99999999998754432 345678999999999999876553210 0 0022344
Q ss_pred ceeEEEcCcccccc--ccccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEeccc
Q 013440 259 SRLMMLKGIKKVSI--LQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCS 322 (443)
Q Consensus 259 L~~L~l~~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 322 (443)
++.+++..+.+... ...+.++.. +++|+.|++++|... .++... .+.+++|++|++++|+
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~-l~~L~~L~Ls~N~l~-~i~~~~--~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQ-ISGLLELEFSRNQLK-SVPDGI--FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHT-CTTCCEEECCSSCCC-CCCTTT--TTTCTTCCEEECCSSC
T ss_pred hhccccccccccCcchhhhHHHHhc-ccCCCEEECCCCCCC-ccCHHH--HhcCCCCCEEEeeCCC
Confidence 55555555443221 011222332 267777777777544 333322 1367777777777774
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=7.3e-20 Score=179.82 Aligned_cols=241 Identities=20% Similarity=0.140 Sum_probs=164.7
Q ss_pred CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecC
Q 013440 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (443)
Q Consensus 39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~ 117 (443)
.+.++..+..+..+|... .++++.|++++|.. ..++...|.++++|++|++++|.++.++ ..+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456777777777777543 36888899988885 4454444688899999999998888754 6688888999999998
Q ss_pred CCCCC-c-ccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccc
Q 013440 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (443)
Q Consensus 118 ~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (443)
|.+.. + ..++.+++|++|++++|.++.+|. .+.++++|+.|++++|+..+.++...+..+++|+.|++++|.+...
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 88877 3 557888899999999988887765 4778889999998887777777766678888888888888876543
Q ss_pred ccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccccc
Q 013440 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQ 274 (443)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 274 (443)
..+..+++|++|++++|.+..++... +..+++|+.|++++|.+....
T Consensus 212 ---------~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------------~~~l~~L~~L~L~~n~l~~~~- 258 (452)
T 3zyi_A 212 ---------PNLTPLVGLEELEMSGNHFPEIRPGS-----------------------FHGLSSLKKLWVMNSQVSLIE- 258 (452)
T ss_dssp ---------CCCTTCTTCCEEECTTSCCSEECGGG-----------------------GTTCTTCCEEECTTSCCCEEC-
T ss_pred ---------ccccccccccEEECcCCcCcccCccc-----------------------ccCccCCCEEEeCCCcCceEC-
Confidence 23667888888888888876554321 234445555555554442221
Q ss_pred ccchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecc
Q 013440 275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDC 321 (443)
Q Consensus 275 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 321 (443)
+..+.. +++|+.|+|++|.........+ ..+++|++|+|+++
T Consensus 259 -~~~~~~-l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 259 -RNAFDG-LASLVELNLAHNNLSSLPHDLF---TPLRYLVELHLHHN 300 (452)
T ss_dssp -TTTTTT-CTTCCEEECCSSCCSCCCTTSS---TTCTTCCEEECCSS
T ss_pred -HHHhcC-CCCCCEEECCCCcCCccChHHh---ccccCCCEEEccCC
Confidence 112222 2556666666554332222222 24566666666665
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=7.9e-20 Score=178.95 Aligned_cols=175 Identities=22% Similarity=0.232 Sum_probs=136.0
Q ss_pred CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecC
Q 013440 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (443)
Q Consensus 39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~ 117 (443)
.+.++..+..+..+|... .++++.|++++|.. ..++...|.++++|++|++++|.++.++ ..+.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456777777777777644 36788899988885 5555555688899999999998888754 6688888999999998
Q ss_pred CCCCC-c-ccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccc
Q 013440 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (443)
Q Consensus 118 ~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (443)
|.+.. + ..+..+++|++|++++|.++.++. .+.++++|+.|++++|+....++...+..+++|++|++++|.+...
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI- 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence 88877 3 467888899999999888887665 5778888999998887777777766678888888888888876533
Q ss_pred ccCCCchhhhhccCCCCCCEEEeecCCCCCCC
Q 013440 195 VEGGSNASLVELERLTELTTLEIEVPDAEILP 226 (443)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (443)
..+..+++|++|++++|.+..++
T Consensus 201 ---------~~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 201 ---------PNLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp ---------CCCTTCSSCCEEECTTSCCCEEC
T ss_pred ---------cccCCCcccCEEECCCCccCccC
Confidence 23677888888888888876554
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=6.5e-19 Score=178.09 Aligned_cols=257 Identities=19% Similarity=0.126 Sum_probs=174.5
Q ss_pred CCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEe
Q 013440 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (443)
Q Consensus 36 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l 115 (443)
..+++.|+++++.+..+|.... ++|+.|++++|.+ ..+|. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l--~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCC--SCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCC--CCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 3468999999999998887554 8999999999985 56665 57899999999999998887 6789999999
Q ss_pred cCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (443)
Q Consensus 116 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (443)
++|.+..++. .+.+|+.|++++|.++.+|.. +++|+.|++++|.+ ..+|. .+.+|+.|++++|.+...+
T Consensus 109 s~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~----~~~~L~~L~L~~N~l~~l~- 177 (622)
T 3g06_A 109 FSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPA----LPSELCKLWAYNNQLTSLP- 177 (622)
T ss_dssp CSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSCCC-
T ss_pred cCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC-CCcCC----ccCCCCEEECCCCCCCCCc-
Confidence 9999887333 678899999999999888764 48899999998654 44543 3467888888888765422
Q ss_pred cCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccc
Q 013440 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE 275 (443)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (443)
..+++|+.|++++|.+..+|.. .++|+.+.+ .+|.+.. ++
T Consensus 178 -----------~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L-------------------------~~N~l~~-l~- 217 (622)
T 3g06_A 178 -----------MLPSGLQELSVSDNQLASLPTL--PSELYKLWA-------------------------YNNRLTS-LP- 217 (622)
T ss_dssp -----------CCCTTCCEEECCSSCCSCCCCC--CTTCCEEEC-------------------------CSSCCSS-CC-
T ss_pred -----------ccCCCCcEEECCCCCCCCCCCc--cchhhEEEC-------------------------cCCcccc-cC-
Confidence 3467888889988888776652 244555444 4433321 11
Q ss_pred cchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccc
Q 013440 276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET 355 (443)
Q Consensus 276 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 355 (443)
. .+++|+.|++++|... .++ ..+++|++|++++| .++.++ . .+++|+.|+++++ .++.
T Consensus 218 -~----~~~~L~~L~Ls~N~L~-~lp------~~l~~L~~L~Ls~N-~L~~lp------~--~~~~L~~L~Ls~N-~L~~ 275 (622)
T 3g06_A 218 -A----LPSGLKELIVSGNRLT-SLP------VLPSELKELMVSGN-RLTSLP------M--LPSGLLSLSVYRN-QLTR 275 (622)
T ss_dssp -C----CCTTCCEEECCSSCCS-CCC------CCCTTCCEEECCSS-CCSCCC------C--CCTTCCEEECCSS-CCCS
T ss_pred -C----CCCCCCEEEccCCccC-cCC------CCCCcCcEEECCCC-CCCcCC------c--ccccCcEEeCCCC-CCCc
Confidence 0 1145666666655332 222 14456666666665 344333 1 4566666666664 4555
Q ss_pred cccccccccccccccceeeeccCc
Q 013440 356 ICYSQLREDQSFSNLRIINVDSCR 379 (443)
Q Consensus 356 ~~~~~~~~~~~~~~L~~L~i~~c~ 379 (443)
++.. ...+++|+.|++++++
T Consensus 276 lp~~----l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 276 LPES----LIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCGG----GGGSCTTCEEECCSCC
T ss_pred CCHH----HhhccccCEEEecCCC
Confidence 5432 2446666666666644
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=4.8e-22 Score=195.97 Aligned_cols=357 Identities=18% Similarity=0.101 Sum_probs=235.5
Q ss_pred CCCCeEEeCCCCCCCCCC--C-cCCCCCCcEEEcccCCCCCc----cCcHHHHhcCCCCCEEEcCCCcccc-cc-ccccC
Q 013440 36 QKDPIAISLPHRDIQELP--E-RLQCPNLQLFLLYTEGNGPM----QVSDHFFEGMEGLKVLQFPGIGSSS-LP-SSLGR 106 (443)
Q Consensus 36 ~~~l~~L~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~-~p-~~l~~ 106 (443)
++++++|+++++.+...+ . ...+++|+.|++++|.. .. .++ ..+..+++|++|++++|.++. .+ .....
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCC-CHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 356889999999885433 2 22789999999999986 32 223 345788999999999999865 22 22334
Q ss_pred CC----CCcEEEecCCCCCC------cccccCCCCCCEEEcCCCCCCC-----Cchh-hcCCCCCCEEeccCCcccccc-
Q 013440 107 LI----NLQTLCLDWCELAD------IAAIGQLKKLEILSLAYSNINQ-----LPVE-IGQLTRLQLLDLSNCWWLEVI- 169 (443)
Q Consensus 107 l~----~L~~L~l~~~~l~~------~~~~~~l~~L~~L~l~~~~~~~-----lp~~-~~~l~~L~~L~l~~~~~~~~~- 169 (443)
+. +|++|++++|.+.+ +..+..+++|++|++++|.++. +... ....++|+.|++++|.+....
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 55 79999999999874 4778899999999999998872 2222 234678999999998765533
Q ss_pred ---chHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc-CCCCCCEEEeecCCCCCC-----CCcc-ccccCcEEEE
Q 013440 170 ---APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-RLTELTTLEIEVPDAEIL-----PPDF-VSVELQRYKI 239 (443)
Q Consensus 170 ---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~-----~~~~-~~~~L~~l~l 239 (443)
+. .+..+++|++|++++|.+...... .....+. ..++|++|++++|.+... +..+ .+++|+.+++
T Consensus 160 ~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 160 EPLAS-VLRAKPDFKELTVSNNDINEAGVR----VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp HHHHH-HHHHCTTCCEEECCSSBCHHHHHH----HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHH-HHhhCCCCCEEECcCCCcchHHHH----HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 33 367789999999999986543320 1111222 366999999999988653 3333 4589999998
Q ss_pred EecCCCCCCCC---c-hhcccccceeEEEcCccccccc--cccchhhHhhcccceeeccccCCccccccccc--cCCCCC
Q 013440 240 RIGDGPEDEFD---P-LLVKSEASRLMMLKGIKKVSIL--QENDGTKMLLQRTEDLWLETLEGVQSVVHELD--DGEGFP 311 (443)
Q Consensus 240 ~~~~~~~~~~~---~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--~~~~l~ 311 (443)
..+...+.... + ....+++|+.|++++|.+.... ..+..+.. +++|++|++++|.........+. .....+
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGC 313 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence 65543221100 1 1124789999999998764321 01222333 38899999999865332211111 012346
Q ss_pred CccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccc--cccccccceeeeccCcCccc-----c
Q 013440 312 RLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE--DQSFSNLRIINVDSCRKLKY-----L 384 (443)
Q Consensus 312 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~--~~~~~~L~~L~i~~c~~l~~-----~ 384 (443)
+|++|++++|. ++.............++.|+.|+++++ .+++.....+.+ ....++|++|++++| .+++ +
T Consensus 314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l 390 (461)
T 1z7x_W 314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSL 390 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH
T ss_pred cceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHH
Confidence 99999999994 332210011123445699999999987 565543221210 012679999999997 5663 3
Q ss_pred cChhhhhcccccceeeeccCc
Q 013440 385 FSFSMAKNLLRLQKVKVEDCD 405 (443)
Q Consensus 385 ~~~~~~~~~~~L~~L~i~~C~ 405 (443)
+ .....+++|++|++++|.
T Consensus 391 ~--~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 391 A--ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp H--HHHHHCCCCCEEECCSSS
T ss_pred H--HHHHhCCCccEEECCCCC
Confidence 3 345678999999999984
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=8.3e-21 Score=177.58 Aligned_cols=263 Identities=13% Similarity=-0.015 Sum_probs=162.0
Q ss_pred CeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEec
Q 013440 39 PIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD 116 (443)
Q Consensus 39 l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~ 116 (443)
++..++..+.+...+... .+++|+.|++++|.. ..++...+.++++|++|++++|.++..++ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 334444544443222211 456788888888875 44555556788888888888888776554 7778888888888
Q ss_pred CCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccccc
Q 013440 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVE 196 (443)
Q Consensus 117 ~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 196 (443)
+|.+..+ ...++|++|++++|.++.++. ..+++|+.|++++|.+....+. .+..+++|++|++++|.+.....
T Consensus 89 ~n~l~~l---~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~- 161 (317)
T 3o53_A 89 NNYVQEL---LVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNF- 161 (317)
T ss_dssp SSEEEEE---EECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTSCCCEEEG-
T ss_pred CCccccc---cCCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccch-hhhccCCCCEEECCCCCCCcccH-
Confidence 8776552 233778888888887776553 2367788888888655443332 36677788888888877765443
Q ss_pred CCCchhhhhc-cCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccc
Q 013440 197 GGSNASLVEL-ERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE 275 (443)
Q Consensus 197 ~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (443)
..+ +.+++|++|++++|.+..++.. ..+++|+.|++++|.+...
T Consensus 162 -------~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------~~l~~L~~L~Ls~N~l~~l--- 206 (317)
T 3o53_A 162 -------AELAASSDTLEHLNLQYNFIYDVKGQ-------------------------VVFAKLKTLDLSSNKLAFM--- 206 (317)
T ss_dssp -------GGGGGGTTTCCEEECTTSCCCEEECC-------------------------CCCTTCCEEECCSSCCCEE---
T ss_pred -------HHHhhccCcCCEEECCCCcCcccccc-------------------------cccccCCEEECCCCcCCcc---
Confidence 333 4677788888887776554432 2345666666666655322
Q ss_pred cchhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccc
Q 013440 276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET 355 (443)
Q Consensus 276 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 355 (443)
+..+... ++|+.|++++|... .++..+ ..+++|++|++++++-... ........++.|+.|++.+++.++.
T Consensus 207 ~~~~~~l-~~L~~L~L~~N~l~-~l~~~~---~~l~~L~~L~l~~N~~~~~----~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 207 GPEFQSA-AGVTWISLRNNKLV-LIEKAL---RFSQNLEHFDLRGNGFHCG----TLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CGGGGGG-TTCSEEECTTSCCC-EECTTC---CCCTTCCEEECTTCCCBHH----HHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred hhhhccc-CcccEEECcCCccc-chhhHh---hcCCCCCEEEccCCCccCc----CHHHHHhccccceEEECCCchhccC
Confidence 1123333 77888888777544 344433 3677888888887742201 1112344566777777766655443
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=2.4e-19 Score=165.02 Aligned_cols=218 Identities=21% Similarity=0.157 Sum_probs=155.4
Q ss_pred cEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcC
Q 013440 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (443)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~ 138 (443)
++++.+++.. ..+|.. -.+.|++|++++|.++.++ ..+..+++|++|++++|.+.. +..++++++|++|+++
T Consensus 14 ~~~~c~~~~l--~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGL--QAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCC--SSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCc--ccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 5677777664 666653 3578999999999998866 568889999999999998877 4678889999999999
Q ss_pred CCC-CCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEE
Q 013440 139 YSN-INQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (443)
Q Consensus 139 ~~~-~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (443)
+|. ++.+ |..+..+++|+.|++++|.+....+. .+..+++|++|++++|.+..... ..++.+++|++|+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPD--------DTFRDLGNLTHLF 159 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCH--------hHhccCCCccEEE
Confidence 996 7766 56688899999999999765544444 47888999999999988765543 5578889999999
Q ss_pred eecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCC
Q 013440 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (443)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 296 (443)
+++|.+..++... +..+++|+.|++++|.+.... +..+..+ ++|+.|++++|..
T Consensus 160 l~~n~l~~~~~~~-----------------------~~~l~~L~~L~l~~n~l~~~~--~~~~~~l-~~L~~L~l~~n~l 213 (285)
T 1ozn_A 160 LHGNRISSVPERA-----------------------FRGLHSLDRLLLHQNRVAHVH--PHAFRDL-GRLMTLYLFANNL 213 (285)
T ss_dssp CCSSCCCEECTTT-----------------------TTTCTTCCEEECCSSCCCEEC--TTTTTTC-TTCCEEECCSSCC
T ss_pred CCCCcccccCHHH-----------------------hcCccccCEEECCCCcccccC--HhHccCc-ccccEeeCCCCcC
Confidence 9988887665431 134455666666665553322 2223332 6777777777655
Q ss_pred ccccccccccCCCCCCccEEEEeccc
Q 013440 297 VQSVVHELDDGEGFPRLKRLLVTDCS 322 (443)
Q Consensus 297 ~~~~~~~~~~~~~l~~L~~L~l~~~~ 322 (443)
....+..+. .+++|++|++++++
T Consensus 214 ~~~~~~~~~---~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 214 SALPTEALA---PLRALQYLRLNDNP 236 (285)
T ss_dssp SCCCHHHHT---TCTTCCEEECCSSC
T ss_pred CcCCHHHcc---cCcccCEEeccCCC
Confidence 443222233 67788888887774
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.8e-18 Score=174.86 Aligned_cols=258 Identities=19% Similarity=0.101 Sum_probs=173.1
Q ss_pred CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEcCC
Q 013440 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAY 139 (443)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~ 139 (443)
+++.|++++|.. ..+|..+ .++|++|++++|.++.+|. .+++|++|++++|.+..++. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L--~~lp~~l---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGL--TTLPDCL---PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCC--SCCCSCC---CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECS
T ss_pred CCcEEEecCCCc--CccChhh---CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcC
Confidence 467777777764 4666543 2677777777777777665 45677777777777666322 567777777777
Q ss_pred CCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeec
Q 013440 140 SNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEV 219 (443)
Q Consensus 140 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 219 (443)
|.++.+|. .+++|+.|++++|. +..+|. .+++|++|++++|.+...+. .+++|+.|++++
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~l~~------------~~~~L~~L~L~~ 170 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSDNQLASLPA------------LPSELCKLWAYN 170 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCS
T ss_pred CcCCCCCC---CCCCcCEEECCCCC-CCcCCC----CCCCCCEEECcCCcCCCcCC------------ccCCCCEEECCC
Confidence 77776665 55667777777654 333443 23667777776665543221 234566666666
Q ss_pred CCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccc
Q 013440 220 PDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQS 299 (443)
Q Consensus 220 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 299 (443)
|.+..+| ..+++|+.|++++|.+.. ++ . ..++|+.|++++|... .
T Consensus 171 N~l~~l~---------------------------~~~~~L~~L~Ls~N~l~~-l~--~----~~~~L~~L~L~~N~l~-~ 215 (622)
T 3g06_A 171 NQLTSLP---------------------------MLPSGLQELSVSDNQLAS-LP--T----LPSELYKLWAYNNRLT-S 215 (622)
T ss_dssp SCCSCCC---------------------------CCCTTCCEEECCSSCCSC-CC--C----CCTTCCEEECCSSCCS-S
T ss_pred CCCCCCc---------------------------ccCCCCcEEECCCCCCCC-CC--C----ccchhhEEECcCCccc-c
Confidence 6665554 234567777777766532 21 1 1278999999987554 3
Q ss_pred cccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccceeeeccCc
Q 013440 300 VVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR 379 (443)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~ 379 (443)
++. .+++|++|++++| .++.++ ..+++|+.|+++++ .++.++. .+++|+.|++++|
T Consensus 216 l~~------~~~~L~~L~Ls~N-~L~~lp--------~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N- 271 (622)
T 3g06_A 216 LPA------LPSGLKELIVSGN-RLTSLP--------VLPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRN- 271 (622)
T ss_dssp CCC------CCTTCCEEECCSS-CCSCCC--------CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-
T ss_pred cCC------CCCCCCEEEccCC-ccCcCC--------CCCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCC-
Confidence 332 4589999999998 555442 56799999999996 6776654 4789999999986
Q ss_pred CcccccChhhhhcccccceeeeccCcccc
Q 013440 380 KLKYLFSFSMAKNLLRLQKVKVEDCDDLK 408 (443)
Q Consensus 380 ~l~~~~~~~~~~~~~~L~~L~i~~C~~l~ 408 (443)
.++.+|. .+.++++|+.|++.+++--.
T Consensus 272 ~L~~lp~--~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 272 QLTRLPE--SLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCCSCCG--GGGGSCTTCEEECCSCCCCH
T ss_pred CCCcCCH--HHhhccccCEEEecCCCCCC
Confidence 7778863 46789999999999986433
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=7.7e-22 Score=200.81 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=41.7
Q ss_pred cCcccceeccccccccccccccccccccccccceeeeccCcCcccccChhhhhcccccceeeeccCcc
Q 013440 339 FPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDD 406 (443)
Q Consensus 339 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~ 406 (443)
+++|+.|++++|. +++.....+ ...+++|++|++++|+. ++.+.......+++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l--~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHV--LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHH--HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCC-CcHHHHHHH--HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6777777777653 333221111 14478888888888875 5554444556788888888888865
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=1.4e-18 Score=170.08 Aligned_cols=224 Identities=16% Similarity=0.170 Sum_probs=181.4
Q ss_pred ccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCC
Q 013440 34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINL 110 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L 110 (443)
+..+.++.|++++|.+..++. ..++++|+.|++++|.. ..++...|.++++|++|++++|.++.+|. .+..+++|
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL 138 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence 456889999999999977764 33899999999999986 66666667999999999999999998775 58999999
Q ss_pred cEEEecCCCCCC--cccccCCCCCCEEEcCCC-CCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEcc
Q 013440 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYS-NINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (443)
Q Consensus 111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~-~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 186 (443)
++|++++|.+.. ...+.++++|++|++++| .+..++. .+.++++|+.|++++|. +..+|. +..+++|+.|+++
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKLDELDLS 215 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSSCCEEECT
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcccCEEECC
Confidence 999999999988 357889999999999996 6666665 58899999999999965 456775 7889999999999
Q ss_pred CCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEE
Q 013440 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMML 264 (443)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 264 (443)
+|.+....+ ..+..+++|++|++++|.+..++... .+++|+.|++..+...... ...+..+++|+.|++
T Consensus 216 ~N~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 216 GNHLSAIRP--------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIHL 286 (440)
T ss_dssp TSCCCEECT--------TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC-TTTTSSCTTCCEEEC
T ss_pred CCccCccCh--------hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC-hhHhccccCCCEEEc
Confidence 998876655 67889999999999999997766543 3478888888555443322 123456778888888
Q ss_pred cCccccc
Q 013440 265 KGIKKVS 271 (443)
Q Consensus 265 ~~~~~~~ 271 (443)
++|....
T Consensus 287 ~~Np~~C 293 (440)
T 3zyj_A 287 HHNPWNC 293 (440)
T ss_dssp CSSCEEC
T ss_pred CCCCccC
Confidence 8876643
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.4e-18 Score=170.62 Aligned_cols=223 Identities=17% Similarity=0.152 Sum_probs=179.3
Q ss_pred ccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCC
Q 013440 34 TIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINL 110 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L 110 (443)
+..++++.|++++|.+..+++. .++++|+.|++++|.. ..++...|.++++|++|++++|.++.+|.. +..+++|
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 4567899999999999777543 3899999999999986 556655578999999999999999987754 8889999
Q ss_pred cEEEecCCCCCC--cccccCCCCCCEEEcCCC-CCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEcc
Q 013440 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYS-NINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (443)
Q Consensus 111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~-~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 186 (443)
++|++++|.+.. ...+.++++|++|++++| .++.++. .+.++++|+.|++++|.+ ..+|. +..+++|+.|+++
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPN--LTPLVGLEELEMS 226 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCC--CTTCTTCCEEECT
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-ccccc--ccccccccEEECc
Confidence 999999999988 357889999999999996 6776665 488999999999999654 45664 7889999999999
Q ss_pred CCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEE
Q 013440 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMML 264 (443)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 264 (443)
+|.+....+ ..+..+++|++|++++|.+..++... .+++|+.+++..+...... ...+..+++|+.|++
T Consensus 227 ~N~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 227 GNHFPEIRP--------GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP-HDLFTPLRYLVELHL 297 (452)
T ss_dssp TSCCSEECG--------GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCEEEC
T ss_pred CCcCcccCc--------ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC-hHHhccccCCCEEEc
Confidence 999877655 77899999999999999997665543 3478888888655443221 122456777888888
Q ss_pred cCcccc
Q 013440 265 KGIKKV 270 (443)
Q Consensus 265 ~~~~~~ 270 (443)
++|...
T Consensus 298 ~~Np~~ 303 (452)
T 3zyi_A 298 HHNPWN 303 (452)
T ss_dssp CSSCEE
T ss_pred cCCCcC
Confidence 887654
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=4.2e-18 Score=156.88 Aligned_cols=184 Identities=21% Similarity=0.230 Sum_probs=155.6
Q ss_pred hccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcE
Q 013440 33 ETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT 112 (443)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~ 112 (443)
...+++++.+++.++.++.+|... .+.++.|++++|.+ ..++...|.++++|++|++++|.++.++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 456678999999999998888655 37899999999996 555555578999999999999999987764 78999999
Q ss_pred EEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440 113 LCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (443)
Q Consensus 113 L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (443)
|++++|.+.. +..+..+++|++|++++|.++.+|. .+.++++|+.|++++|.+ ..++...+..+++|+.|++++|.+
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccCCCEEECCCCcC
Confidence 9999999988 6778899999999999999998774 588999999999999654 456666678899999999999988
Q ss_pred CcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc
Q 013440 191 GWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF 229 (443)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 229 (443)
..... ..+..+++|+.|++++|.+..+|..+
T Consensus 161 ~~l~~--------~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 161 TELPA--------GLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp SCCCT--------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CccCH--------HHhcCcCCCCEEECCCCcCCccChhh
Confidence 76554 55678999999999999998887653
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=8.5e-18 Score=153.35 Aligned_cols=197 Identities=21% Similarity=0.294 Sum_probs=156.4
Q ss_pred CCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCCcEEEec
Q 013440 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCLD 116 (443)
Q Consensus 38 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L~~L~l~ 116 (443)
..+.++++++.+..+|.... +.++.|++++|.. ..++...|.++++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57789999999988876443 6899999999985 566665568899999999999999887755 5789999999999
Q ss_pred CCCCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcc
Q 013440 117 WCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (443)
Q Consensus 117 ~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (443)
+|.+.. +..+..+++|++|++++|.++.++.. +..+++|+.|++++|.+ ..++...+..+++|++|++++|.+...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecCCcCcEe
Confidence 999888 35678899999999999999877654 78899999999999654 456655578899999999999887665
Q ss_pred cccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccc
Q 013440 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKK 269 (443)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (443)
.+ ..+..+++|++|++++|.+..++... +..+++|+.|++++|..
T Consensus 173 ~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~-----------------------~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 173 PE--------GAFDKLTELKTLKLDNNQLKRVPEGA-----------------------FDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CT--------TTTTTCTTCCEEECCSSCCSCCCTTT-----------------------TTTCTTCCEEECCSSCB
T ss_pred Ch--------hHhccCCCcCEEECCCCcCCcCCHHH-----------------------hccccCCCEEEecCCCe
Confidence 54 55778899999999999887766532 13455666677777655
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=1.7e-19 Score=168.60 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=148.1
Q ss_pred cCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcE
Q 013440 35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT 112 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~ 112 (443)
.+++++.|++++|.+..+++ ...+++|+.|++++|.. ...+. +..+++|++|++++|.++.++ ..++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLD--LESLSTLRTLDLNNNYVQELL----VGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC--EEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC--Ccchh--hhhcCCCCEEECcCCcccccc----CCCCcCE
Confidence 35689999999999987764 34899999999999986 33443 689999999999999998766 3489999
Q ss_pred EEecCCCCCCcccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440 113 LCLDWCELADIAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (443)
Q Consensus 113 L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (443)
|++++|.+.... ...+++|++|++++|.++.++. .+..+++|+.|++++|.+.+..+......+++|++|++++|.+.
T Consensus 104 L~l~~n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 104 LHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp EECCSSCCSEEE-ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred EECCCCccCCcC-ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 999999988722 1237889999999999997755 68889999999999987666555553457899999999999876
Q ss_pred cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc-ccccCcEEEEE
Q 013440 192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-VSVELQRYKIR 240 (443)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~ 240 (443)
.... ...+++|++|++++|.+..++..+ .+++|+.+++.
T Consensus 183 ~~~~----------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 183 DVKG----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (317)
T ss_dssp EEEC----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred cccc----------ccccccCCEEECCCCcCCcchhhhcccCcccEEECc
Confidence 5432 335889999999999998776654 23555555553
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=2.5e-20 Score=189.64 Aligned_cols=346 Identities=14% Similarity=0.043 Sum_probs=182.5
Q ss_pred CCCCeEEeCCCC-CCCC--CCCcC-CCCCCcEEEcccCCCCCccC---cHHHHhcCCCCCEEEcCCCc--cc--cccccc
Q 013440 36 QKDPIAISLPHR-DIQE--LPERL-QCPNLQLFLLYTEGNGPMQV---SDHFFEGMEGLKVLQFPGIG--SS--SLPSSL 104 (443)
Q Consensus 36 ~~~l~~L~l~~~-~~~~--l~~~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~--~~--~~p~~l 104 (443)
++++++|++.+| .+.. ++... .+++|++|++++|.. .+.. ...+...+++|++|++++|. +. .++..+
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV-DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEE-ECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCcc-CCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 456666666655 3321 22322 456666666665542 1111 11112245566666666554 11 122222
Q ss_pred cCCCCCcEEEecCCC-CCC-cccccCCCCCCEEEcCCC-------------------------------CCCCCchhhcC
Q 013440 105 GRLINLQTLCLDWCE-LAD-IAAIGQLKKLEILSLAYS-------------------------------NINQLPVEIGQ 151 (443)
Q Consensus 105 ~~l~~L~~L~l~~~~-l~~-~~~~~~l~~L~~L~l~~~-------------------------------~~~~lp~~~~~ 151 (443)
..+++|++|++++|. +.. +..+.++++|+.|+++.+ ....++..+..
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 345556666665552 222 233344444554443322 22234444556
Q ss_pred CCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecC---------CC
Q 013440 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP---------DA 222 (443)
Q Consensus 152 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~---------~~ 222 (443)
+++|+.|++++|.+.......++..+++|++|++.+| .... ........+++|++|++..+ .+
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~-------~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA-------GLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH-------HHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH-------HHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 7888888888876443333334567888888888876 2211 11122345788888888542 22
Q ss_pred CCCC-Ccc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEEc--C---ccccccccccch---hhHhhcccceeec
Q 013440 223 EILP-PDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK--G---IKKVSILQENDG---TKMLLQRTEDLWL 291 (443)
Q Consensus 223 ~~~~-~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~---~~~~~~~~~~~~---~~~~~~~L~~L~L 291 (443)
.... ..+ .+++|+.+.+......+.........+++|+.|++. + |+.....+.... +...+++|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 1100 001 257888886654443322111112357889999998 2 222221111111 1223478999999
Q ss_pred cccCCcccc-ccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccccccccc
Q 013440 292 ETLEGVQSV-VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNL 370 (443)
Q Consensus 292 ~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L 370 (443)
++ .+.+. ...+. ..+++|++|++++|. ++ +.+.......+++|+.|++++|+. ++.....+ ...+++|
T Consensus 440 ~~--~l~~~~~~~l~--~~~~~L~~L~L~~~~-i~---~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~--~~~l~~L 508 (594)
T 2p1m_B 440 SG--LLTDKVFEYIG--TYAKKMEMLSVAFAG-DS---DLGMHHVLSGCDSLRKLEIRDCPF-GDKALLAN--ASKLETM 508 (594)
T ss_dssp CS--SCCHHHHHHHH--HHCTTCCEEEEESCC-SS---HHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHT--GGGGGGS
T ss_pred cC--cccHHHHHHHH--HhchhccEeeccCCC-Cc---HHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHH--HHhCCCC
Confidence 76 33222 11111 137899999999985 32 211111225589999999999864 43322111 2568999
Q ss_pred ceeeeccCcCcccccChhhhhcccccceeeec
Q 013440 371 RIINVDSCRKLKYLFSFSMAKNLLRLQKVKVE 402 (443)
Q Consensus 371 ~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~ 402 (443)
++|++++|+. +..+.......+|.|+...+.
T Consensus 509 ~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 509 RSLWMSSCSV-SFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp SEEEEESSCC-BHHHHHHHHHHCTTEEEEEEC
T ss_pred CEEeeeCCCC-CHHHHHHHHHhCCCCEEEEec
Confidence 9999999976 444333444667777655544
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=7.5e-18 Score=156.67 Aligned_cols=189 Identities=17% Similarity=0.215 Sum_probs=145.4
Q ss_pred hhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440 32 EETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ 111 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~ 111 (443)
....++++++|++.++.+..++....+++|+.|++++|.. ..++. +.++++|++|++++|.++.++ .+..+++|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC--CCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 3445678899999999888888766889999999998875 55555 578899999999999888875 578888999
Q ss_pred EEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440 112 TLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (443)
Q Consensus 112 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (443)
+|++++|.+..+..+..+++|++|++++|.++.++. +..+++|+.|++++|.+ ..++. +..+++|+.|++++|.+.
T Consensus 111 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV-SDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcC-CCChh--hcCCCCCCEEECCCCccC
Confidence 999999988885568888999999999998887765 78888999999988654 34444 678888999998888775
Q ss_pred cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEE
Q 013440 192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKI 239 (443)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l 239 (443)
... .+..+++|++|++++|.+..++....+++|+.+++
T Consensus 187 ~~~----------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l 224 (308)
T 1h6u_A 187 DIS----------PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224 (308)
T ss_dssp CCG----------GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEE
T ss_pred cCh----------hhcCCCCCCEEEccCCccCccccccCCCCCCEEEc
Confidence 432 26778888888888888866553223344444444
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=1.2e-17 Score=152.92 Aligned_cols=204 Identities=17% Similarity=0.183 Sum_probs=91.3
Q ss_pred CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEE
Q 013440 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (443)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~ 136 (443)
.|+.|++++|.. ..++...|.++++|++|++++|.++.++ ..+..+++|++|++++|.+.. +..+.++++|++|+
T Consensus 29 ~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 455555555543 3333323345555555555555554433 234555555555555555544 23445555555555
Q ss_pred cCCCCCCCCch-hhcCCCCCCEEeccCCcccc-ccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCC-
Q 013440 137 LAYSNINQLPV-EIGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELT- 213 (443)
Q Consensus 137 l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~- 213 (443)
+++|.++.++. .+.++++|+.|++++|.+.. .+|.. +..+++|++|++++|.+..... ..+..+..++.|.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~l~l 180 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC-----TDLRVLHQMPLLNL 180 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG-----GGGHHHHTCTTCCE
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCH-----HHhhhhhhccccce
Confidence 55555554433 34555555555555543322 12332 4455555555555554443322 1112222222222
Q ss_pred EEEeecCCCCCCCCccc-cccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccc
Q 013440 214 TLEIEVPDAEILPPDFV-SVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI 272 (443)
Q Consensus 214 ~L~l~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 272 (443)
+|++++|.+..++...+ ..+|+.+++..+...... ...+..+++|+.|++++|.....
T Consensus 181 ~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC-TTTTTTCCSCCEEECCSSCBCCC
T ss_pred eeecCCCcccccCccccCCCcccEEECCCCceeecC-HhHhcccccccEEEccCCccccc
Confidence 45555555544443321 123333333222211110 01124456666666666655433
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=4e-19 Score=175.73 Aligned_cols=144 Identities=18% Similarity=0.166 Sum_probs=60.7
Q ss_pred CCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEe
Q 013440 38 DPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (443)
Q Consensus 38 ~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l 115 (443)
+++.|++++|.+..+++ ...+++|++|++++|.. .. .++ +..+++|++|++++|.++.+|. .++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~-~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YE-TLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC-EE-EEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC-CC-Ccc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 44555555544443332 11444455555554443 11 111 3444455555555544444332 144444555
Q ss_pred cCCCCCCcccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440 116 DWCELADIAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (443)
Q Consensus 116 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (443)
++|.+..+.. ..+++|+.|++++|.++.+ |..++++++|+.|++++|.+.+..|......+++|+.|++++|.+
T Consensus 107 ~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred cCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 4444444110 1234444444444444433 223444444444444444333333332122344444444444443
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=2.6e-18 Score=160.25 Aligned_cols=248 Identities=14% Similarity=0.048 Sum_probs=161.8
Q ss_pred ccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHH------hcCCCCCEEEcCCCcccc-ccccc--
Q 013440 34 TIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFF------EGMEGLKVLQFPGIGSSS-LPSSL-- 104 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~~~~-~p~~l-- 104 (443)
+..++++.+.+.++.+ .+|.... ..|+.|++++|......++..++ .++++|++|++++|.++. +|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred ccCCCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 3345566777777777 5554331 11777777777652234454431 158888888888888874 66665
Q ss_pred cCCCCCcEEEecCCCCCC-cccccCC-----CCCCEEEcCCCCCCCCc-hhhcCCCCCCEEeccCCcccccc--chH-Hh
Q 013440 105 GRLINLQTLCLDWCELAD-IAAIGQL-----KKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVI--APN-VI 174 (443)
Q Consensus 105 ~~l~~L~~L~l~~~~l~~-~~~~~~l-----~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~--~~~-~l 174 (443)
..+++|++|++++|.+.. +..++.+ ++|++|++++|.++.++ ..++++++|+.|++++|...+.. +.. .+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 778888888888888776 5555555 78888888888888665 56788888888888887655442 222 12
Q ss_pred hcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCC-Ccc--ccccCcEEEEEecCCCCCCCCc
Q 013440 175 SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILP-PDF--VSVELQRYKIRIGDGPEDEFDP 251 (443)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~--~~~~L~~l~l~~~~~~~~~~~~ 251 (443)
..+++|++|++++|.+..... .....+..+++|++|++++|.+...+ ... .+++|+.+++..+...... .
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip--~ 270 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSG-----VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP--K 270 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHH-----HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHH-----HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh--h
Confidence 677888888888887653221 01123356788888888888876544 222 3478888888655544221 1
Q ss_pred hhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCc
Q 013440 252 LLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGV 297 (443)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 297 (443)
.+. ++|+.|++++|.+.+. +. +.. +++|++|++++|+..
T Consensus 271 ~~~--~~L~~L~Ls~N~l~~~---p~-~~~-l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLDRN---PS-PDE-LPQVGNLSLKGNPFL 309 (312)
T ss_dssp SCC--SEEEEEECCSSCCCSC---CC-TTT-SCEEEEEECTTCTTT
T ss_pred hcc--CCceEEECCCCCCCCC---hh-Hhh-CCCCCEEeccCCCCC
Confidence 112 7889999999877443 22 333 388999999887643
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=2.1e-18 Score=157.52 Aligned_cols=151 Identities=26% Similarity=0.296 Sum_probs=69.0
Q ss_pred cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEE
Q 013440 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTL 113 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L 113 (443)
.+++++.|.+.++.+..++....+++|+.|++++|.. ..++ . +.++++|++|++++|.++.++. .++.+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l--~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--HDIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC--CCCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCC--CCch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3455555555555555554444555555555555543 2222 1 3455555555555555544332 23445555555
Q ss_pred EecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440 114 CLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (443)
Q Consensus 114 ~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (443)
++++|.+.. + ..++++++|++|++++|.++.++.. +.++++|+.|++++|.+. .++...+..+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcC
Confidence 555555444 1 2244455555555555544444332 344444444444443322 22222233444444444444433
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=1.5e-17 Score=154.60 Aligned_cols=179 Identities=20% Similarity=0.260 Sum_probs=141.7
Q ss_pred eCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC
Q 013440 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD 122 (443)
Q Consensus 43 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~ 122 (443)
.+..+.+........+++|+.|+++++.. ..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..
T Consensus 25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 25 AAGKSNVTDTVTQADLDGITTLSAFGTGV--TTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HTTCSSTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred HhCCCCcCceecHHHcCCcCEEEeeCCCc--cCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence 34444444444445788999999999985 55653 5789999999999999998877 8999999999999999988
Q ss_pred cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchh
Q 013440 123 IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNAS 202 (443)
Q Consensus 123 ~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 202 (443)
+..+..+++|++|++++|.++.++. +..+++|+.|++++|.+ ..++. +..+++|+.|++++|.+...
T Consensus 100 ~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~--------- 166 (308)
T 1h6u_A 100 VSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP--LAGLTNLQYLSIGNAQVSDL--------- 166 (308)
T ss_dssp CGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCC---------
T ss_pred chhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc--ccCCCCccEEEccCCcCCCC---------
Confidence 7788999999999999999998865 89999999999999654 44444 68899999999999877543
Q ss_pred hhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEE
Q 013440 203 LVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIR 240 (443)
Q Consensus 203 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 240 (443)
..++.+++|+.|++++|.+..++....+++|+.+++.
T Consensus 167 -~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 167 -TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLK 203 (308)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred -hhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence 2278899999999999988776653233455555443
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.3e-17 Score=150.52 Aligned_cols=180 Identities=24% Similarity=0.333 Sum_probs=153.9
Q ss_pred ccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCC
Q 013440 34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINL 110 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L 110 (443)
...+.+++|+++++.+..++. ...+++|++|++++|.. ..++..+|.++++|++|++++|.++.+|. .+..+++|
T Consensus 34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 111 (270)
T 2o6q_A 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111 (270)
T ss_dssp CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence 345789999999999988875 34899999999999985 67788778899999999999999998764 56889999
Q ss_pred cEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (443)
Q Consensus 111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 187 (443)
++|++++|.+.. +..++.+++|++|++++|.++.+|.. +..+++|+.|++++|.+ ..++...+..+++|++|++++
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC-cEeChhHhccCCCcCEEECCC
Confidence 999999999988 45688999999999999999988775 78999999999999654 445554578899999999999
Q ss_pred CCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCC
Q 013440 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEI 224 (443)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 224 (443)
|.+..... ..+..+++|+.|++++|.+..
T Consensus 191 N~l~~~~~--------~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 191 NQLKRVPE--------GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SCCSCCCT--------TTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCcCCH--------HHhccccCCCEEEecCCCeeC
Confidence 98876554 557889999999999998743
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=3.8e-18 Score=152.77 Aligned_cols=199 Identities=13% Similarity=0.185 Sum_probs=145.8
Q ss_pred hhhhhhhccCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCC-Ccccccc-c
Q 013440 27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGSSSLP-S 102 (443)
Q Consensus 27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~p-~ 102 (443)
+.+.+. ....++.|+++++.++.++. ...+++|+.|++++|.. ...++...|.++++|++|++++ |.++.++ .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS-CCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 444444 55678888888888877775 23788888888888862 2566665567888888888887 7887765 4
Q ss_pred cccCCCCCcEEEecCCCCCCcccccCCCCCC---EEEcCCC-CCCCCchh-hcCCCCCC-EEeccCCccccccchHHhhc
Q 013440 103 SLGRLINLQTLCLDWCELADIAAIGQLKKLE---ILSLAYS-NINQLPVE-IGQLTRLQ-LLDLSNCWWLEVIAPNVISK 176 (443)
Q Consensus 103 ~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~---~L~l~~~-~~~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~~l~~ 176 (443)
.+..+++|++|++++|.+..++.++.+.+|+ +|++++| .++.+|.. +.++++|+ .|++++|.+. .++...+..
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence 5778888888888888887744477777777 8888888 88877654 77888888 8888886543 666554444
Q ss_pred CCCCcEEEccCCC-CCcccccCCCchhhhhccCC-CCCCEEEeecCCCCCCCCccccccCcEEEE
Q 013440 177 LSQLEELYMGNGF-SGWEKVEGGSNASLVELERL-TELTTLEIEVPDAEILPPDFVSVELQRYKI 239 (443)
Q Consensus 177 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l 239 (443)
++|++|++++|. +..... ..++.+ ++|+.|++++|.+..+|.. .+++|+.|.+
T Consensus 179 -~~L~~L~L~~n~~l~~i~~--------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTVIDK--------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp -CEEEEEECTTCTTCCEECT--------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred -CCCCEEEcCCCCCcccCCH--------HHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 788888888884 654433 456677 8888888888888777765 4556666654
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=3.9e-19 Score=165.78 Aligned_cols=246 Identities=16% Similarity=0.105 Sum_probs=166.7
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc--cccccc-------CCCCCcEEEecCCCCCC--ccc
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLG-------RLINLQTLCLDWCELAD--IAA 125 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~p~~l~-------~l~~L~~L~l~~~~l~~--~~~ 125 (443)
..++|+.|++++|.. .+|..+... |++|++++|.+.. +|..+. .+++|++|++++|.+.. +..
T Consensus 41 ~~~~L~~l~l~~n~l---~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE---ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEECTTHHHHCCTT---CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred cCCCceeEeeccccc---ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 456788999999884 778776544 8999999999854 666655 79999999999999886 555
Q ss_pred c--cCCCCCCEEEcCCCCCCCCchhhcCC-----CCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCC
Q 013440 126 I--GQLKKLEILSLAYSNINQLPVEIGQL-----TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGG 198 (443)
Q Consensus 126 ~--~~l~~L~~L~l~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 198 (443)
+ +.+++|++|++++|.++.+|..+..+ ++|++|++++|.+.+..+. .++.+++|++|++++|.+.....
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--- 190 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPELGERG--- 190 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCSCTTCHHHH---
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEEECCCCCcCcchH---
Confidence 4 88999999999999999878777776 9999999999766544434 48899999999999998644311
Q ss_pred Cchhhhhc--cCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCcccccccccc
Q 013440 199 SNASLVEL--ERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEN 276 (443)
Q Consensus 199 ~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 276 (443)
.+..+ +.+++|++|++++|.+..++.... ..+..+++|+.|++++|.+....+..
T Consensus 191 ---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 191 ---LISALCPLKFPTLQVLALRNAGMETPSGVCS--------------------ALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp ---HHHHSCTTSCTTCCEEECTTSCCCCHHHHHH--------------------HHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred ---HHHHHHhccCCCCCEEECCCCcCcchHHHHH--------------------HHHhcCCCCCEEECCCCcCCcccchh
Confidence 12334 789999999999998874432110 00123455555666665553332111
Q ss_pred chhhHhhcccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccc
Q 013440 277 DGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL 350 (443)
Q Consensus 277 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 350 (443)
. +. .+++|+.|++++|... .++..+ .++|++|+++++ .++.++ ....+++|+.|++++.
T Consensus 248 ~-~~-~l~~L~~L~Ls~N~l~-~ip~~~-----~~~L~~L~Ls~N-~l~~~p------~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 248 S-CD-WPSQLNSLNLSFTGLK-QVPKGL-----PAKLSVLDLSYN-RLDRNP------SPDELPQVGNLSLKGN 306 (312)
T ss_dssp C-CC-CCTTCCEEECTTSCCS-SCCSSC-----CSEEEEEECCSS-CCCSCC------CTTTSCEEEEEECTTC
T ss_pred h-hh-hcCCCCEEECCCCccC-hhhhhc-----cCCceEEECCCC-CCCCCh------hHhhCCCCCEEeccCC
Confidence 1 11 1256666777666543 333321 156777777766 343332 2455677777777663
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=3.6e-18 Score=168.93 Aligned_cols=239 Identities=15% Similarity=0.043 Sum_probs=188.9
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEE
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~ 136 (443)
.+++|+.|++++|.. ..++...|.++++|++|++++|.++..++ ++.+++|++|++++|.+..+. ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred cCCCccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEE
Confidence 456899999999986 55555556899999999999999987665 899999999999999887622 238999999
Q ss_pred cCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhcc-CCCCCCEE
Q 013440 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-RLTELTTL 215 (443)
Q Consensus 137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L 215 (443)
+++|.++.++. ..+++|+.|++++|.+.+..+.. ++.+++|+.|++++|.+....+ ..+. .+++|++|
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~--------~~l~~~l~~L~~L 174 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNF--------AELAASSDTLEHL 174 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEG--------GGGGGGTTTCCEE
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcCh--------HHHhhhCCcccEE
Confidence 99999997765 35789999999998766655544 7889999999999999877554 4554 78999999
Q ss_pred EeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccC
Q 013440 216 EIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE 295 (443)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 295 (443)
++++|.+..++....+++|+.|++..+...... +.+..+++|+.|++++|.+.+ + +..+.. +++|+.|++++|+
T Consensus 175 ~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~l~~L~~L~Ls~N~l~~-l--p~~l~~-l~~L~~L~l~~N~ 248 (487)
T 3oja_A 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG--PEFQSAAGVTWISLRNNKLVL-I--EKALRF-SQNLEHFDLRGNG 248 (487)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC--GGGGGGTTCSEEECTTSCCCE-E--CTTCCC-CTTCCEEECTTCC
T ss_pred ecCCCccccccccccCCCCCEEECCCCCCCCCC--HhHcCCCCccEEEecCCcCcc-c--chhhcc-CCCCCEEEcCCCC
Confidence 999999988877667899999999766655432 446788999999999998854 2 333333 3889999999988
Q ss_pred Cc-cccccccccCCCCCCccEEEEecc
Q 013440 296 GV-QSVVHELDDGEGFPRLKRLLVTDC 321 (443)
Q Consensus 296 ~~-~~~~~~~~~~~~l~~L~~L~l~~~ 321 (443)
.. ..++..+. .++.|+.+++..+
T Consensus 249 l~c~~~~~~~~---~l~~L~~l~~~~~ 272 (487)
T 3oja_A 249 FHCGTLRDFFS---KNQRVQTVAKQTV 272 (487)
T ss_dssp BCHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred CcCcchHHHHH---hCCCCcEEecccc
Confidence 76 33333333 6788888877633
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=4.3e-17 Score=148.81 Aligned_cols=214 Identities=18% Similarity=0.200 Sum_probs=170.7
Q ss_pred CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCC
Q 013440 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118 (443)
Q Consensus 39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~ 118 (443)
+..+.+..+.+........+++|+.|++.++.. ..++. +..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCC--CCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCCc--ccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC
Confidence 344555566665555555889999999999985 45554 578999999999999998875 6889999999999999
Q ss_pred CCCC-c-ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440 119 ELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (443)
Q Consensus 119 ~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (443)
.+.. + ..++++++|++|++++|.++.++.. +.++++|+.|++++|.+ ..++...+..+++|+.|++++|.+....+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEECCCCCcCccCH
Confidence 9988 3 5578999999999999999977665 78999999999999755 45555557899999999999998876554
Q ss_pred cCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccc
Q 013440 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL 273 (443)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 273 (443)
..++.+++|++|++++|.+..++... .+++|+.+++..+... ..++.++.+.+..|.+.+.+
T Consensus 175 --------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 175 --------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp --------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGB
T ss_pred --------HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcc
Confidence 55788999999999999998877654 4689999998544321 45677888888877765554
Q ss_pred c
Q 013440 274 Q 274 (443)
Q Consensus 274 ~ 274 (443)
+
T Consensus 239 p 239 (272)
T 3rfs_A 239 R 239 (272)
T ss_dssp B
T ss_pred c
Confidence 3
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=2.6e-17 Score=150.63 Aligned_cols=197 Identities=22% Similarity=0.245 Sum_probs=160.4
Q ss_pred cCCCCeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCc
Q 013440 35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQ 111 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~ 111 (443)
..+++++|+++++.+..++. ..++++|++|++++|.. ..++...|.++++|++|++++|.++.++ ..+..+++|+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 45689999999999987774 33899999999999985 5666655789999999999999998865 6789999999
Q ss_pred EEEecCCCCCC--cccccCCCCCCEEEcCCCCCCC--CchhhcCCCCCCEEeccCCccccccchHHhhcCCCCc----EE
Q 013440 112 TLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE----EL 183 (443)
Q Consensus 112 ~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L 183 (443)
+|++++|.+.. ...++.+++|++|++++|.++. +|..+.++++|+.|++++|.+.+..+. .+..+.+|+ .+
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-Hhhhhhhccccceee
Confidence 99999999888 3468999999999999999985 788999999999999999765443333 355666666 89
Q ss_pred EccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecC
Q 013440 184 YMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGD 243 (443)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~ 243 (443)
++++|.+..... ......+|++|++++|.+..++... .+++|+.+++..+.
T Consensus 183 ~ls~n~l~~~~~---------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 183 DLSLNPMNFIQP---------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ECCSSCCCEECT---------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ecCCCcccccCc---------cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 999998865543 2223348999999999998888765 35899999985443
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=5.3e-17 Score=149.58 Aligned_cols=177 Identities=23% Similarity=0.294 Sum_probs=136.4
Q ss_pred hhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCc
Q 013440 32 EETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ 111 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~ 111 (443)
....+++++.|++.++.+..++....+++|+.|++++|.. ..++. +.++++|++|++++|.++.++. +..+++|+
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCcc--CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence 3445677888888888888887766888888888888875 44554 5788888888888888887654 78888888
Q ss_pred EEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440 112 TLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (443)
Q Consensus 112 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (443)
+|++++|.+..+..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+.
T Consensus 116 ~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCC
Confidence 8888888887777778888888888888888877 567888888888888865443 433 677888888888888765
Q ss_pred cccccCCCchhhhhccCCCCCCEEEeecCCCCCCCC
Q 013440 192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (443)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (443)
.. ..+..+++|+.|++++|.+...|.
T Consensus 192 ~l----------~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 192 DL----------RALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp BC----------GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred CC----------hhhccCCCCCEEECcCCcccCCcc
Confidence 42 336778888888888887755443
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=1.2e-16 Score=147.20 Aligned_cols=170 Identities=18% Similarity=0.174 Sum_probs=140.8
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCCCCCCcccccCCCCCCEE
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEIL 135 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L 135 (443)
+++++++++++++.. ..+|..+ .+.+++|++++|.++.+ +..+..+++|++|++++|.+..+...+.+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNL--TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCC--SSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccCCccEEECCCCCC--CcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 678899999999885 6777654 37899999999999875 56789999999999999999885445889999999
Q ss_pred EcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEE
Q 013440 136 SLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL 215 (443)
Q Consensus 136 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 215 (443)
++++|.++.+|..+..+++|+.|++++|.+ ..++...+..+++|++|++++|.+....+ ..+..+++|+.|
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L 153 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPP--------GLLTPTPKLEKL 153 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCT--------TTTTTCTTCCEE
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCccCh--------hhcccccCCCEE
Confidence 999999999999899999999999999654 45554458899999999999998876554 557789999999
Q ss_pred EeecCCCCCCCCcc--ccccCcEEEEE
Q 013440 216 EIEVPDAEILPPDF--VSVELQRYKIR 240 (443)
Q Consensus 216 ~l~~~~~~~~~~~~--~~~~L~~l~l~ 240 (443)
++++|.+..+|... .+++|+.+++.
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 99999998888754 23555555553
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=3e-17 Score=154.67 Aligned_cols=173 Identities=16% Similarity=0.164 Sum_probs=123.2
Q ss_pred CCCCeEEeCCCCCCCCCCCcC-CC--CCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc--ccccccCCCCC
Q 013440 36 QKDPIAISLPHRDIQELPERL-QC--PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLGRLINL 110 (443)
Q Consensus 36 ~~~l~~L~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~p~~l~~l~~L 110 (443)
....+++++.++.+. +... .+ ++++.|++++|.. ....+. + .++++|++|++++|.++. ++..+..+++|
T Consensus 46 ~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l-~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM-DQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp STTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE-CSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred chhheeeccccccCC--HHHHHhhhhccceEEEcCCccc-cccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 345778888877654 1111 33 7888888888875 333333 3 468888888888888764 67777888888
Q ss_pred cEEEecCCCCCC--cccccCCCCCCEEEcCCC-CCC--CCchhhcCCCCCCEEeccCC-ccccc-cchHHhhcCC-CCcE
Q 013440 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYS-NIN--QLPVEIGQLTRLQLLDLSNC-WWLEV-IAPNVISKLS-QLEE 182 (443)
Q Consensus 111 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~-~~~--~lp~~~~~l~~L~~L~l~~~-~~~~~-~~~~~l~~l~-~L~~ 182 (443)
++|++++|.+.+ +..++.+++|++|++++| .++ .++..+.++++|+.|++++| .+.+. ++. .+..++ +|++
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~ 199 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQ 199 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCE
Confidence 888888888775 567778888888888888 677 36667788888888888887 44433 333 367788 8888
Q ss_pred EEccCCC--CCcccccCCCchhhhhccCCCCCCEEEeecCC
Q 013440 183 LYMGNGF--SGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (443)
Q Consensus 183 L~l~~~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (443)
|++++|. +... .....++.+++|++|++++|.
T Consensus 200 L~l~~~~~~~~~~-------~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 200 LNLSGYRKNLQKS-------DLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp EECCSCGGGSCHH-------HHHHHHHHCTTCSEEECTTCT
T ss_pred EEeCCCcccCCHH-------HHHHHHhhCCCCCEEeCCCCC
Confidence 8888874 2211 223556778888888888887
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=1.8e-16 Score=142.89 Aligned_cols=177 Identities=21% Similarity=0.278 Sum_probs=146.0
Q ss_pred CCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEe
Q 013440 37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCL 115 (443)
Q Consensus 37 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l 115 (443)
...+++++.++.++.+|.... +.++.|++++|.. ..++...|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 346788999999988887554 6899999999986 5555555689999999999999998855 45788999999999
Q ss_pred cCCCCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440 116 DWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (443)
Q Consensus 116 ~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (443)
++|.+.. +..++.+++|++|++++|.++.+|.. +..+++|+.|++++|.+ ..++...+..+++|++|++++|.+..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999888 36678899999999999999988765 68899999999999654 45655447889999999999998876
Q ss_pred ccccCCCchhhhhccCCCCCCEEEeecCCCCCC
Q 013440 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEIL 225 (443)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 225 (443)
..+ ..+..+++|++|++++|.+...
T Consensus 170 ~~~--------~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPH--------GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCT--------TTTTTCTTCCEEECCSCCBCTT
T ss_pred cCH--------HHHhCCCCCCEEEeeCCceeCC
Confidence 554 5678889999999999988654
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=1.8e-17 Score=148.36 Aligned_cols=204 Identities=15% Similarity=0.158 Sum_probs=151.9
Q ss_pred CCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCc-cccccc-cccCCCCCcEEEecC-CCCCC--c
Q 013440 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPS-SLGRLINLQTLCLDW-CELAD--I 123 (443)
Q Consensus 49 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~p~-~l~~l~~L~~L~l~~-~~l~~--~ 123 (443)
++.+|. -.+.|+.|++++|.. ..++...|.++++|++|++++|. ++.++. .+..+++|++|++++ +.+.. +
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 666776 345899999999985 66776667899999999999997 888764 688999999999998 88887 3
Q ss_pred ccccCCCCCCEEEcCCCCCCCCchhhcCCCCCC---EEeccCCccccccchHHhhcCCCCc-EEEccCCCCCcccccCCC
Q 013440 124 AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ---LLDLSNCWWLEVIAPNVISKLSQLE-ELYMGNGFSGWEKVEGGS 199 (443)
Q Consensus 124 ~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~ 199 (443)
..+.++++|++|++++|.++.+|. +..+++|+ .|++++|.....++...+..+++|+ .|++++|.+.....
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~---- 173 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG---- 173 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT----
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH----
Confidence 678899999999999999998887 88888888 9999997456667665578899999 99999888764432
Q ss_pred chhhhhccCCCCCCEEEeecCC-CCCCCCccccccCcEEEEEecCCCCCCCCchhccc-ccceeEEEcCccccccccccc
Q 013440 200 NASLVELERLTELTTLEIEVPD-AEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKS-EASRLMMLKGIKKVSILQEND 277 (443)
Q Consensus 200 ~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~ 277 (443)
..+.. ++|++|++++|. +..++... +..+ ++|+.|++++|.+. .++..
T Consensus 174 ----~~~~~-~~L~~L~L~~n~~l~~i~~~~-----------------------~~~l~~~L~~L~l~~N~l~-~l~~~- 223 (239)
T 2xwt_C 174 ----YAFNG-TKLDAVYLNKNKYLTVIDKDA-----------------------FGGVYSGPSLLDVSQTSVT-ALPSK- 223 (239)
T ss_dssp ----TTTTT-CEEEEEECTTCTTCCEECTTT-----------------------TTTCSBCCSEEECTTCCCC-CCCCT-
T ss_pred ----hhcCC-CCCCEEEcCCCCCcccCCHHH-----------------------hhccccCCcEEECCCCccc-cCChh-
Confidence 23333 688899999884 76665432 1344 56666666666553 22211
Q ss_pred hhhHhhcccceeeccccC
Q 013440 278 GTKMLLQRTEDLWLETLE 295 (443)
Q Consensus 278 ~~~~~~~~L~~L~L~~~~ 295 (443)
.+++|+.|++.++.
T Consensus 224 ----~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 224 ----GLEHLKELIARNTW 237 (239)
T ss_dssp ----TCTTCSEEECTTC-
T ss_pred ----HhccCceeeccCcc
Confidence 23677777776553
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=1.5e-17 Score=156.81 Aligned_cols=123 Identities=18% Similarity=0.143 Sum_probs=64.6
Q ss_pred CCcEEEcccCCCCCccCcHHHHhcC--CCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC---cccccCCCCCCE
Q 013440 60 NLQLFLLYTEGNGPMQVSDHFFEGM--EGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLEI 134 (443)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~ 134 (443)
.++.++++++.. . ...+..+ ..+++|+++++.+...+..+..+++|++|++++|.+.. +..++.+++|++
T Consensus 48 ~~~~l~l~~~~~-~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNL-H----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBC-C----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccC-C----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 356666666554 1 2223444 66666666666666544445556666666666665543 244555566666
Q ss_pred EEcCCCCCC-CCchhhcCCCCCCEEeccCCccccc--cchHHhhcCCCCcEEEccCC
Q 013440 135 LSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNG 188 (443)
Q Consensus 135 L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~ 188 (443)
|++++|.++ ..+..+.++++|+.|++++|..... ++. .+..+++|++|++++|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWC 178 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCC
Confidence 666665554 3444455555555555555522221 222 2444555555555544
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=153.07 Aligned_cols=225 Identities=14% Similarity=0.066 Sum_probs=152.1
Q ss_pred CCCCCcEEEcccCCCCCccCcHHH--HhcCCCCCEEEcCCCcccc-ccccc--cCCCCCcEEEecCCCCCC--c----cc
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHF--FEGMEGLKVLQFPGIGSSS-LPSSL--GRLINLQTLCLDWCELAD--I----AA 125 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-~p~~l--~~l~~L~~L~l~~~~l~~--~----~~ 125 (443)
....++.+.+.++.. .......+ +..+..|++|++++|.+.. .|..+ ..+++|++|++++|.+.. + ..
T Consensus 62 ~~~~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 445677788877664 22111111 1245679999999988875 56665 788899999999988775 1 33
Q ss_pred ccCCCCCCEEEcCCCCCCCCc-hhhcCCCCCCEEeccCCccccc--cc-hHHhhcCCCCcEEEccCCCCCcccccCCCch
Q 013440 126 IGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEV--IA-PNVISKLSQLEELYMGNGFSGWEKVEGGSNA 201 (443)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 201 (443)
+..+++|++|++++|.++.++ ..+.++++|+.|++++|.+.+. ++ ...+..+++|++|++++|.+.....
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~------ 214 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG------ 214 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH------
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH------
Confidence 457888999999999888655 4578889999999988765442 21 1113578889999998887753321
Q ss_pred hhh-hccCCCCCCEEEeecCCCCCC-CCcc-cc---ccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccc
Q 013440 202 SLV-ELERLTELTTLEIEVPDAEIL-PPDF-VS---VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE 275 (443)
Q Consensus 202 ~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~-~~---~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (443)
... .++.+++|++|++++|.+... |..+ .+ ++|+.+++..+...... . ...++|+.|++++|.+.+. +.
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp--~--~~~~~L~~L~Ls~N~l~~~-~~ 289 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP--K--GLPAKLRVLDLSSNRLNRA-PQ 289 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC--S--CCCSCCSCEECCSCCCCSC-CC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh--h--hhcCCCCEEECCCCcCCCC-ch
Confidence 112 246788899999998888665 5444 22 68888888666554322 1 1237899999999887532 22
Q ss_pred cchhhHhhcccceeeccccCCc
Q 013440 276 NDGTKMLLQRTEDLWLETLEGV 297 (443)
Q Consensus 276 ~~~~~~~~~~L~~L~L~~~~~~ 297 (443)
+ . .+++|+.|++++|+..
T Consensus 290 ~---~-~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 290 P---D-ELPEVDNLTLDGNPFL 307 (310)
T ss_dssp T---T-SCCCCSCEECSSTTTS
T ss_pred h---h-hCCCccEEECcCCCCC
Confidence 2 2 2388999999988653
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=4.1e-16 Score=157.38 Aligned_cols=179 Identities=21% Similarity=0.287 Sum_probs=154.2
Q ss_pred hhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCC
Q 013440 31 MEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (443)
Q Consensus 31 ~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L 110 (443)
.....+..++.|++.++.+..++....+++|+.|++++|.+ ..++. +..+++|++|++++|.+..+| .+..+++|
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKL 111 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred cchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence 34566788999999999999998877999999999999986 55555 689999999999999998876 68899999
Q ss_pred cEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440 111 QTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (443)
Q Consensus 111 ~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (443)
++|++++|.+..+..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 112 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCC
Confidence 99999999998877899999999999999999987 678999999999999976654444 68899999999999987
Q ss_pred CcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCc
Q 013440 191 GWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (443)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (443)
... ..+..+++|+.|++++|.+...|..
T Consensus 188 ~~l----------~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 188 SDL----------RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp CBC----------GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred CCC----------hHHccCCCCCEEEccCCcCcCCccc
Confidence 542 4578899999999999987655543
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=1.3e-15 Score=140.18 Aligned_cols=182 Identities=21% Similarity=0.236 Sum_probs=143.3
Q ss_pred CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCC
Q 013440 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118 (443)
Q Consensus 39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~ 118 (443)
+..+.+....+..+.....+++|+.|++++|.. ..++. +..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCc--ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence 334455666665555555788999999999985 55554 5789999999999999998877 889999999999999
Q ss_pred CCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCC
Q 013440 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGG 198 (443)
Q Consensus 119 ~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 198 (443)
.+..+..++.+++|++|++++|.++.+ ..+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+....
T Consensus 101 ~l~~~~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~N~l~~~~---- 172 (291)
T 1h6t_A 101 KVKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIV---- 172 (291)
T ss_dssp CCCCGGGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCG----
T ss_pred cCCCChhhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCc-ch--hhccCCCCCEEEccCCccccch----
Confidence 998877799999999999999999887 468899999999999976544 43 3788999999999999875432
Q ss_pred CchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEE
Q 013440 199 SNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKI 239 (443)
Q Consensus 199 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l 239 (443)
.++.+++|+.|++++|.+..++....+++|+.+++
T Consensus 173 ------~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l 207 (291)
T 1h6t_A 173 ------PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207 (291)
T ss_dssp ------GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEE
T ss_pred ------hhcCCCccCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 27788999999999998876654223344444444
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=2e-17 Score=159.00 Aligned_cols=264 Identities=12% Similarity=-0.010 Sum_probs=155.1
Q ss_pred hccCCCCeEEeCCCCCCCCC-----CC-cCCCCCCcEEEcccCCC--CCccCcHHH------HhcCCCCCEEEcCCCccc
Q 013440 33 ETIQKDPIAISLPHRDIQEL-----PE-RLQCPNLQLFLLYTEGN--GPMQVSDHF------FEGMEGLKVLQFPGIGSS 98 (443)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~~l-----~~-~~~~~~L~~L~l~~~~~--~~~~~~~~~------~~~l~~L~~L~l~~~~~~ 98 (443)
....+++++|++++|.+... .. ...+++|+.|++++|.. ....+|..+ +..+++|++|++++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 44567788888888776432 11 22677888888887642 122334433 357788888888888776
Q ss_pred c-----ccccccCCCCCcEEEecCCCCCC--cc----cccCC---------CCCCEEEcCCCCCC--CCc---hhhcCCC
Q 013440 99 S-----LPSSLGRLINLQTLCLDWCELAD--IA----AIGQL---------KKLEILSLAYSNIN--QLP---VEIGQLT 153 (443)
Q Consensus 99 ~-----~p~~l~~l~~L~~L~l~~~~l~~--~~----~~~~l---------~~L~~L~l~~~~~~--~lp---~~~~~l~ 153 (443)
. +|..+..+++|++|++++|.+.. +. .+..+ ++|++|++++|.++ .++ ..+.+++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 56677778888888888887754 22 23333 78888888888776 344 3566777
Q ss_pred CCCEEeccCCccccc----cchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc
Q 013440 154 RLQLLDLSNCWWLEV----IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF 229 (443)
Q Consensus 154 ~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 229 (443)
+|+.|++++|.+... +....+..+++|+.|++++|.+..... ...+..+..+++|++|++++|.+.......
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~----~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----SALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----HHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH----HHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 888888888654422 112125677788888888777642211 122355677778888888877764321100
Q ss_pred ccccCcEEEEEecCCCCCCCCchh--cccccceeEEEcCcccccc--ccccchhhHhhcccceeeccccCCccccc--cc
Q 013440 230 VSVELQRYKIRIGDGPEDEFDPLL--VKSEASRLMMLKGIKKVSI--LQENDGTKMLLQRTEDLWLETLEGVQSVV--HE 303 (443)
Q Consensus 230 ~~~~L~~l~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~ 303 (443)
.. ..+ ..+++|+.|++++|.+... ...+..+...+++|++|++++|......+ ..
T Consensus 264 l~-------------------~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~ 324 (386)
T 2ca6_A 264 VV-------------------DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 324 (386)
T ss_dssp HH-------------------HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHH
T ss_pred HH-------------------HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHH
Confidence 00 011 1256677777777665431 01223332334778888887776554332 11
Q ss_pred cccCCCCCCccEEEEecc
Q 013440 304 LDDGEGFPRLKRLLVTDC 321 (443)
Q Consensus 304 ~~~~~~l~~L~~L~l~~~ 321 (443)
+ ...++.++.+++...
T Consensus 325 l--~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 325 I--REVFSTRGRGELDEL 340 (386)
T ss_dssp H--HHHHHHHTCCEECCC
T ss_pred H--HHHhhhcCcchhhhc
Confidence 1 123556665566554
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=2.6e-15 Score=142.15 Aligned_cols=219 Identities=15% Similarity=0.067 Sum_probs=110.1
Q ss_pred CCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcE-EEccCCCCCcccccCCCchhhhhccC
Q 013440 131 KLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEE-LYMGNGFSGWEKVEGGSNASLVELER 208 (443)
Q Consensus 131 ~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~~~l~~ 208 (443)
++++|++++|+++.+|.. +.++++|+.|++++|.+.+.++...+..++++++ +.+..|.+....+ ..++.
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~--------~~f~~ 102 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP--------EAFQN 102 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT--------TSBCC
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc--------hhhhh
Confidence 344444444444444432 4445555555555544444444333444444443 2233344333322 34455
Q ss_pred CCCCCEEEeecCCCCCCCCcccc--ccCcEEEEEecCCCCCCCCchh-cccccceeEEEcCccccccccccchhhHhhcc
Q 013440 209 LTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLL-VKSEASRLMMLKGIKKVSILQENDGTKMLLQR 285 (443)
Q Consensus 209 l~~L~~L~l~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 285 (443)
+++|++|++++|.+..++..... .++..+.+.............+ .....++.|++++|.+.. ++. ..... .+
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~--~~f~~-~~ 178 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHN--SAFNG-TQ 178 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECT--TSSTT-EE
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CCh--hhccc-cc
Confidence 55666666666665555543322 2233333321111000000011 223456777777776632 221 11112 56
Q ss_pred cceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccc
Q 013440 286 TEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQ 365 (443)
Q Consensus 286 L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 365 (443)
++.+.+.++..+..++... ...+++|++|+++++ .++.++ ...|..|+.|.+.++.+++.++. ..
T Consensus 179 L~~l~l~~~n~l~~i~~~~--f~~l~~L~~LdLs~N-~l~~lp-------~~~~~~L~~L~~l~~~~l~~lP~-----l~ 243 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDV--FHGASGPVILDISRT-RIHSLP-------SYGLENLKKLRARSTYNLKKLPT-----LE 243 (350)
T ss_dssp EEEEECTTCTTCCCCCTTT--TTTEECCSEEECTTS-CCCCCC-------SSSCTTCCEEECTTCTTCCCCCC-----TT
T ss_pred hhHHhhccCCcccCCCHHH--hccCcccchhhcCCC-CcCccC-------hhhhccchHhhhccCCCcCcCCC-----ch
Confidence 7777777766666665432 136778888888877 455553 24466777777777777766653 35
Q ss_pred cccccceeeec
Q 013440 366 SFSNLRIINVD 376 (443)
Q Consensus 366 ~~~~L~~L~i~ 376 (443)
.+++|+.+++.
T Consensus 244 ~l~~L~~l~l~ 254 (350)
T 4ay9_X 244 KLVALMEASLT 254 (350)
T ss_dssp TCCSCCEEECS
T ss_pred hCcChhhCcCC
Confidence 57777777774
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=5.9e-16 Score=144.09 Aligned_cols=221 Identities=12% Similarity=0.022 Sum_probs=165.1
Q ss_pred cCCCCeEEeCCCCCCCC-----CCCcCCCCCCcEEEcccCCCCCccCcHHHH-hcCCCCCEEEcCCCccccc-c----cc
Q 013440 35 IQKDPIAISLPHRDIQE-----LPERLQCPNLQLFLLYTEGNGPMQVSDHFF-EGMEGLKVLQFPGIGSSSL-P----SS 103 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~-----l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~-p----~~ 103 (443)
....++.+.+.+..+.. +.....+++|+.|++++|.. ....+..++ .++++|++|++++|.++.. + ..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 34457888888776621 11223567799999999986 555555543 7899999999999998752 2 33
Q ss_pred ccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCC---Cchh--hcCCCCCCEEeccCCccccccch---HH
Q 013440 104 LGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQ---LPVE--IGQLTRLQLLDLSNCWWLEVIAP---NV 173 (443)
Q Consensus 104 l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~---lp~~--~~~l~~L~~L~l~~~~~~~~~~~---~~ 173 (443)
+..+++|++|++++|.+.. +..++.+++|++|++++|.+.. ++.. +.++++|+.|++++|.+ ..++. ..
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHH
Confidence 4578999999999999877 4778899999999999998763 4333 46899999999999765 33332 23
Q ss_pred hhcCCCCcEEEccCCCCCcccccCCCchhhhhccC---CCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCC
Q 013440 174 ISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER---LTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFD 250 (443)
Q Consensus 174 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 250 (443)
++.+++|++|++++|.+....+ ..+.. +++|++|++++|.+..+|..+. ++|+.+++..+.....
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~--- 287 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVN--------PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRA--- 287 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCC--------SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSC---
T ss_pred HhcCCCCCEEECCCCCCCccch--------hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCC---
Confidence 5778999999999998876533 33334 4799999999999998888754 8999999977665543
Q ss_pred chhcccccceeEEEcCccc
Q 013440 251 PLLVKSEASRLMMLKGIKK 269 (443)
Q Consensus 251 ~~~~~~~~L~~L~l~~~~~ 269 (443)
+....+++|+.|++++|.+
T Consensus 288 ~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 288 PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCTTSCCCCSCEECSSTTT
T ss_pred chhhhCCCccEEECcCCCC
Confidence 2246789999999999876
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=2.3e-17 Score=158.61 Aligned_cols=141 Identities=12% Similarity=0.067 Sum_probs=74.8
Q ss_pred cccccceeEEEcCccccccc--cc-cchhhHhhcccceeeccccCCc----cccccccccCCCCCCccEEEEecccCcee
Q 013440 254 VKSEASRLMMLKGIKKVSIL--QE-NDGTKMLLQRTEDLWLETLEGV----QSVVHELDDGEGFPRLKRLLVTDCSEILH 326 (443)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~--~~-~~~~~~~~~~L~~L~L~~~~~~----~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 326 (443)
..+++|+.|++++|.+.... .. +..+.. +++|+.|+|++|... ..++..+. .+++|++|+|++|. ++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~---~~~~L~~L~L~~n~-i~~ 258 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALK---SWPNLRELGLNDCL-LSA 258 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGG---GCTTCCEEECTTCC-CCH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhc-CCCccEEECcCCCCCcHHHHHHHHHHc---cCCCcCEEECCCCC-Cch
Confidence 34556666666666543110 00 112222 267777777777643 33333333 67888888888874 322
Q ss_pred eccccccccc--CccCcccceeccccccccc-----cccccccccccccccceeeeccCcCccccc--Chhhhhcccccc
Q 013440 327 IVGSVRRVRC--EVFPLLEALSLMFLTNLET-----ICYSQLREDQSFSNLRIINVDSCRKLKYLF--SFSMAKNLLRLQ 397 (443)
Q Consensus 327 ~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~--~~~~~~~~~~L~ 397 (443)
.......... ..+++|+.|++++| .++. ++.. + ...+++|++|++++|+ ++... ...+...++.++
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~-l--~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTV-I--DEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHH-H--HHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHH-H--HhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcC
Confidence 1100000112 33788888888876 4544 3221 0 1347889999998864 44433 133444566666
Q ss_pred eeeeccC
Q 013440 398 KVKVEDC 404 (443)
Q Consensus 398 ~L~i~~C 404 (443)
.+++..-
T Consensus 334 ~~~l~~~ 340 (386)
T 2ca6_A 334 RGELDEL 340 (386)
T ss_dssp CCEECCC
T ss_pred cchhhhc
Confidence 6666443
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=4.1e-16 Score=157.39 Aligned_cols=184 Identities=21% Similarity=0.232 Sum_probs=148.7
Q ss_pred CCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecC
Q 013440 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117 (443)
Q Consensus 38 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~ 117 (443)
.+..+.+..+.+..+.....++.|+.|++++|.. ..++. +..+++|+.|++++|.++.++. +..+++|++|++++
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i--~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCC--CCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCC--CCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 3445566666666666656889999999999985 55554 5889999999999999998876 88999999999999
Q ss_pred CCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccC
Q 013440 118 CELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG 197 (443)
Q Consensus 118 ~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 197 (443)
|.+..++.+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+....
T Consensus 97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~~~--- 169 (605)
T 1m9s_A 97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIV--- 169 (605)
T ss_dssp SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-CG--GGGSCTTCSEEECCSSCCCCCG---
T ss_pred CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-ch--hhcccCCCCEEECcCCcCCCch---
Confidence 99988778999999999999999998874 58899999999999976544 43 3789999999999999876432
Q ss_pred CCchhhhhccCCCCCCEEEeecCCCCCCCCccccccCcEEEEE
Q 013440 198 GSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIR 240 (443)
Q Consensus 198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 240 (443)
. +..+++|+.|++++|.+..++....+++|+.|++.
T Consensus 170 ------~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 170 ------P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 205 (605)
T ss_dssp ------G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred ------h-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEcc
Confidence 2 78899999999999988776543345666666664
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=5.2e-15 Score=133.27 Aligned_cols=157 Identities=21% Similarity=0.269 Sum_probs=133.7
Q ss_pred ccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCC
Q 013440 34 TIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINL 110 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L 110 (443)
+..+.++.|+++++.+..+++. .++++|+.|++++|.. ..++...|.++++|++|++++|.++.+| ..+..+++|
T Consensus 32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence 3557899999999999777653 3899999999999986 5566666789999999999999999876 557899999
Q ss_pred cEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440 111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (443)
Q Consensus 111 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 187 (443)
++|++++|.+.. + ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.+. .++...+..+++|+.|++++
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeC
Confidence 999999999988 3 457899999999999999998877 5889999999999997654 55544588999999999999
Q ss_pred CCCCcc
Q 013440 188 GFSGWE 193 (443)
Q Consensus 188 ~~~~~~ 193 (443)
|.+...
T Consensus 189 N~~~c~ 194 (251)
T 3m19_A 189 NQFDCS 194 (251)
T ss_dssp CCBCTT
T ss_pred CceeCC
Confidence 987543
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=2.7e-15 Score=129.89 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=91.8
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC--cccccCCCCCCE
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEI 134 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~ 134 (443)
.+++|+.|++++|.. ..++ . +..+++|++|++++|.++.++ .+..+++|++|++++|.+.. +..++.+++|++
T Consensus 42 ~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINV--TDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCC--SCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCc--cChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 455666666666664 3444 2 356666666666666555443 45666667777777666655 566666677777
Q ss_pred EEcCCCCCCC-CchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCC
Q 013440 135 LSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELT 213 (443)
Q Consensus 135 L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 213 (443)
|++++|.++. .|..+.++++|+.|++++|...+.++. +..+++|+.|++++|.+... ..+..+++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~----------~~l~~l~~L~ 184 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY----------RGIEDFPKLN 184 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC----------TTGGGCSSCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh----------HHhccCCCCC
Confidence 7777776663 555566677777777776554555552 56667777777776655431 2455666777
Q ss_pred EEEeecCCCC
Q 013440 214 TLEIEVPDAE 223 (443)
Q Consensus 214 ~L~l~~~~~~ 223 (443)
+|++++|.+.
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 7777766653
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.8e-15 Score=130.93 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=129.3
Q ss_pred ccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-ccccccCCCCCcE
Q 013440 34 TIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQT 112 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p~~l~~l~~L~~ 112 (443)
..++++++|+++++.+..++....+++|+.|++++|.. ..++ . +..+++|++|++++|.++. .+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~--~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA--TNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC--SCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC--Ccch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55678999999999999988766999999999999964 4444 2 5889999999999999986 6788999999999
Q ss_pred EEecCCCCCC--cccccCCCCCCEEEcCCCC-CCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440 113 LCLDWCELAD--IAAIGQLKKLEILSLAYSN-INQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (443)
Q Consensus 113 L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 189 (443)
|++++|.+.+ +..++.+++|++|++++|. ++.+| .+.++++|+.|++++|.+. .++. +..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~~--l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYRG--IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCTT--GGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChHH--hccCCCCCEEEeeCcc
Confidence 9999999987 7889999999999999997 88887 6899999999999997654 4552 7899999999999987
Q ss_pred CC
Q 013440 190 SG 191 (443)
Q Consensus 190 ~~ 191 (443)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 64
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=8.4e-16 Score=139.32 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=129.3
Q ss_pred cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEE
Q 013440 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~ 114 (443)
.+.++..+.+.++.+..++....+++|+.|++++|.. ..++ . +..+++|++|++++|.++.++. +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI--QSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCC--CCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCc--ccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 3444666677777777776555788888888888875 5555 2 5778888888888888888776 78888888888
Q ss_pred ecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCccc
Q 013440 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (443)
Q Consensus 115 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (443)
+++|.+..++.+.. ++|++|++++|.++.++ .+.++++|+.|++++|.+ ..++. +..+++|+.|++++|.+...
T Consensus 92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~~--l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIVM--LGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCGG--GGGCTTCCEEECTTSCCCBC-
T ss_pred CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC-CCChH--HccCCCCCEEECCCCcCcch-
Confidence 88888877433444 88888888888888775 578888888888888654 44442 67888888888888876543
Q ss_pred ccCCCchhhhhccCCCCCCEEEeecCCCCCCCC
Q 013440 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (443)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (443)
..+..+++|+.|++++|.+...|.
T Consensus 166 ---------~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 166 ---------GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ---------TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ---------HHhccCCCCCEEeCCCCcccCCcc
Confidence 446778888888888887765543
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=5.1e-15 Score=140.17 Aligned_cols=148 Identities=17% Similarity=0.152 Sum_probs=83.9
Q ss_pred EEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-cc-ccccCCCCCcE-EEecC
Q 013440 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LP-SSLGRLINLQT-LCLDW 117 (443)
Q Consensus 41 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p-~~l~~l~~L~~-L~l~~ 117 (443)
.++.++++++++|..+ .++++.|++++|.+ ..++...|.++++|++|++++|.+.+ +| ..|.+++++++ +.++.
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4555556666666543 35677777777764 56666556677777777777776643 44 23556666554 34444
Q ss_pred CCCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCC-CCcEEEccCCCCC
Q 013440 118 CELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSG 191 (443)
Q Consensus 118 ~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~ 191 (443)
+.+.. +..++.+++|++|++++|.++.+|.. +....++..+++.++..+..++...+..+. .++.|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 55555 35566667777777776666655442 344555566666554444444443333332 3455555555443
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=1.5e-15 Score=144.49 Aligned_cols=243 Identities=9% Similarity=-0.008 Sum_probs=103.6
Q ss_pred CCCCCEEEcCCCcccccc-----ccccCCC-CCcEEEecCCCCCC--cccccCC-----CCCCEEEcCCCCCCCCc-h--
Q 013440 84 MEGLKVLQFPGIGSSSLP-----SSLGRLI-NLQTLCLDWCELAD--IAAIGQL-----KKLEILSLAYSNINQLP-V-- 147 (443)
Q Consensus 84 l~~L~~L~l~~~~~~~~p-----~~l~~l~-~L~~L~l~~~~l~~--~~~~~~l-----~~L~~L~l~~~~~~~lp-~-- 147 (443)
..+|++|++++|.++..+ ..+..++ +|++|++++|.+.+ +..+..+ ++|++|++++|.++..+ .
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 333555555555554432 3344444 55555555555443 2222222 55555555555554222 1
Q ss_pred --hhcCC-CCCCEEeccCCccccccchHH---hhc-CCCCcEEEccCCCCCcccccCCCchhhhhccCCC-CCCEEEeec
Q 013440 148 --EIGQL-TRLQLLDLSNCWWLEVIAPNV---ISK-LSQLEELYMGNGFSGWEKVEGGSNASLVELERLT-ELTTLEIEV 219 (443)
Q Consensus 148 --~~~~l-~~L~~L~l~~~~~~~~~~~~~---l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~ 219 (443)
.+..+ ++|+.|++++|.+.+..+... +.. .++|++|++++|.+..... ......+..++ +|++|++++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS----DELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH----HHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH----HHHHHHHhcCCccccEeeecC
Confidence 12233 555555555544332222111 122 2355666665555443221 11122333333 566666665
Q ss_pred CCCCCCCCccccccCcEEEEEecCCCCCCCCchhccc-ccceeEEEcCcccccccc--ccchhhHhhcccceeeccccCC
Q 013440 220 PDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKS-EASRLMMLKGIKKVSILQ--ENDGTKMLLQRTEDLWLETLEG 296 (443)
Q Consensus 220 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~ 296 (443)
|.+......... ..+..+ ++|+.|++++|.+..... .+..+....++|+.|++++|..
T Consensus 177 n~l~~~~~~~l~-------------------~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 177 NNLASKNCAELA-------------------KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp SCGGGSCHHHHH-------------------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred CCCchhhHHHHH-------------------HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 555332221000 001122 355555555554422110 1112222224677777776654
Q ss_pred cccccccc-ccCCCCCCccEEEEecccCceeeccc---ccccccCccCcccceecccc
Q 013440 297 VQSVVHEL-DDGEGFPRLKRLLVTDCSEILHIVGS---VRRVRCEVFPLLEALSLMFL 350 (443)
Q Consensus 297 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~~~~~~~L~~L~l~~c 350 (443)
.......+ .....+++|++|++++|. +..+... ........++.|+.|++++.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 33211000 002366778888888773 1111110 00113345566666777664
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=7.6e-15 Score=133.00 Aligned_cols=156 Identities=21% Similarity=0.197 Sum_probs=134.4
Q ss_pred hhhhhccCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCC
Q 013440 29 KKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108 (443)
Q Consensus 29 ~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~ 108 (443)
+......+++++.|++.++.+..++....+++|+.|++++|.. ..++. +.++++|++|++++|.++.+|.... +
T Consensus 33 ~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~ 106 (263)
T 1xeu_A 33 DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--A 106 (263)
T ss_dssp SEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--S
T ss_pred cccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc--CCChh--hccCCCCCEEECCCCccCCcCcccc--C
Confidence 3345567799999999999999998777999999999999986 55665 6899999999999999998876443 9
Q ss_pred CCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCC
Q 013440 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG 188 (443)
Q Consensus 109 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 188 (443)
+|++|++++|.+..+..++.+++|++|++++|.++.++ .+..+++|+.|++++|.+.+. . .+..+++|+.|++++|
T Consensus 107 ~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~--~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G--GLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp SCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T--TSTTCCCCCEEEEEEE
T ss_pred cccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H--HhccCCCCCEEeCCCC
Confidence 99999999999988777999999999999999999886 689999999999999766554 3 3789999999999998
Q ss_pred CCCccc
Q 013440 189 FSGWEK 194 (443)
Q Consensus 189 ~~~~~~ 194 (443)
.+...+
T Consensus 183 ~~~~~~ 188 (263)
T 1xeu_A 183 KCVNEP 188 (263)
T ss_dssp EEECCC
T ss_pred cccCCc
Confidence 775543
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=6.2e-15 Score=128.75 Aligned_cols=169 Identities=18% Similarity=0.236 Sum_probs=110.0
Q ss_pred eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCCcEEEecCC
Q 013440 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCLDWC 118 (443)
Q Consensus 40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L~~L~l~~~ 118 (443)
+.+...++.+..+|... .++|+.|++++|.. ..++...|.++++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555666666665433 45777777777775 455555567777788888877777776543 567777777777777
Q ss_pred CCCC-c-ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440 119 ELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (443)
Q Consensus 119 ~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (443)
.+.. + ..++++++|++|++++|.++.++.. +.++++|+.|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee----
Confidence 7766 3 3456777777777777777766554 567777777777775443 444444666777777777776432
Q ss_pred cCCCchhhhhccCCCCCCEEEeecCCC-CCCCC
Q 013440 196 EGGSNASLVELERLTELTTLEIEVPDA-EILPP 227 (443)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~ 227 (443)
+.+++|+.|+++.|.+ ..+|.
T Consensus 162 -----------~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 -----------CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp -----------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred -----------cCCCCHHHHHHHHHhCCceeec
Confidence 2344666666665555 24443
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=2.2e-14 Score=127.14 Aligned_cols=149 Identities=21% Similarity=0.263 Sum_probs=107.9
Q ss_pred CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecC
Q 013440 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDW 117 (443)
Q Consensus 39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~ 117 (443)
.+.++..++.+..+|... .++|+.|++++|.+ ..++...|.++++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777777777644 37788888888875 44444445778888888888888877664 357788888888888
Q ss_pred CCCCC-c-ccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (443)
Q Consensus 118 ~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (443)
|.+.. + ..+..+++|++|++++|.++.+|..+.++++|+.|++++|.+ ..++...+..+++|+.|++.+|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCCcc
Confidence 88777 3 446778888888888888888887778888888888887543 4455444667777777777776654
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=2e-14 Score=126.66 Aligned_cols=148 Identities=14% Similarity=0.171 Sum_probs=90.7
Q ss_pred eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecCC
Q 013440 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC 118 (443)
Q Consensus 40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~~ 118 (443)
+.++++++.++.+|... .+.++.|++++|.+ ....+...|.++++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 36777777776666533 34456777777765 222233445667777777777777766543 5666777777777777
Q ss_pred CCCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440 119 ELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (443)
Q Consensus 119 ~l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (443)
.+.. +..++.+++|++|++++|.++.+ |..+..+++|+.|++++|.+....|. .+..+++|+.|++++|.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECCSCCE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEecCcCC
Confidence 7666 24466677777777777766654 44466666666666666544333333 255566666666665544
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=4.2e-14 Score=141.28 Aligned_cols=186 Identities=17% Similarity=0.184 Sum_probs=136.4
Q ss_pred CCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEe
Q 013440 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (443)
Q Consensus 36 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l 115 (443)
..+++.|+++++.+..+|... +++|+.|++++|.+ ..+| ..+++|++|++++|.++.+|. +.. +|++|++
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l--~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPDNL-PPQITVLEITQNAL--ISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp HTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCC--SCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred cCCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCC--cccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 348999999999998888755 48899999999986 4677 357899999999999988887 655 8999999
Q ss_pred cCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccc
Q 013440 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (443)
Q Consensus 116 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (443)
++|.+..++. .+++|++|++++|.++.+|. .+++|+.|++++|.+. .+|. +. ++|+.|++++|.+...+.
T Consensus 128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-~lp~--l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 128 DNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-FLPE--LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred CCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-Ccch--hh--CCCCEEECcCCCCCchhh
Confidence 9999888433 68899999999999888876 6788999999986544 4665 33 789999998887763321
Q ss_pred cCCCchhhhhc-cCCCCCCEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccc
Q 013440 196 EGGSNASLVEL-ERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS 271 (443)
Q Consensus 196 ~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (443)
....+ ...+.|+.|++++|.+..+|..+ ..+++|+.|++++|.+.+
T Consensus 198 ------~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l------------------------~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 198 ------VPVRNHHSEETEIFFRCRENRITHIPENI------------------------LSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ------CC--------CCEEEECCSSCCCCCCGGG------------------------GGSCTTEEEECCSSSCCH
T ss_pred ------HHHhhhcccccceEEecCCCcceecCHHH------------------------hcCCCCCEEEeeCCcCCC
Confidence 00001 11223388888888888777643 335566666666666544
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=1.1e-14 Score=127.14 Aligned_cols=152 Identities=19% Similarity=0.226 Sum_probs=129.1
Q ss_pred ccCCCCeEEeCCCCCCCCCCCc--CCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCC
Q 013440 34 TIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINL 110 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L 110 (443)
...+++++|+++++.++.++.. ..+++|++|++++|.. ..++...|.++++|++|++++|.++.+|.. +..+++|
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 4567899999999999887764 3899999999999986 577777778999999999999999987654 6899999
Q ss_pred cEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440 111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (443)
Q Consensus 111 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 187 (443)
++|++++|.+.. + ..++.+++|++|++++|.++.++.. +.++++|+.|++++|... +.+++|+.|+++.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWI 174 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHH
Confidence 999999999988 3 4578999999999999999987765 788999999999997543 4566788888888
Q ss_pred CCCCcccc
Q 013440 188 GFSGWEKV 195 (443)
Q Consensus 188 ~~~~~~~~ 195 (443)
|.+....+
T Consensus 175 n~~~g~ip 182 (208)
T 2o6s_A 175 NKHSGVVR 182 (208)
T ss_dssp HHCTTTBB
T ss_pred HhCCceee
Confidence 87765554
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=1e-15 Score=145.61 Aligned_cols=13 Identities=0% Similarity=-0.092 Sum_probs=8.5
Q ss_pred CCCCccEEEEecc
Q 013440 309 GFPRLKRLLVTDC 321 (443)
Q Consensus 309 ~l~~L~~L~l~~~ 321 (443)
.+++|++|+++++
T Consensus 282 ~l~~L~~LdL~~N 294 (362)
T 3goz_A 282 NIQKIILVDKNGK 294 (362)
T ss_dssp TCCEEEEECTTSC
T ss_pred cCCceEEEecCCC
Confidence 5566666777666
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=3.7e-14 Score=124.88 Aligned_cols=147 Identities=20% Similarity=0.238 Sum_probs=90.7
Q ss_pred eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCC
Q 013440 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (443)
Q Consensus 40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~ 118 (443)
+.++..++.+..+|.... +.++.|++++|.+ ..++...|.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456666666766665432 5677777777764 445544456677777777777777664 556667777777777777
Q ss_pred CCCC-c-ccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCC
Q 013440 119 ELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (443)
Q Consensus 119 ~l~~-~-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (443)
.+.. + ..+.++++|++|++++|.++.+ |..+..+++|+.|++++|.+ ..++...+..+++|+.|++++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC-CEECHHHHhCCCCCCEEEeCCCCc
Confidence 7666 2 3356667777777777766654 33466666666666666443 333333355556666666655543
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.55 E-value=2.3e-14 Score=136.26 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=122.6
Q ss_pred eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHh-cCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecC
Q 013440 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFE-GMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (443)
Q Consensus 40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~ 117 (443)
+.+++.++.++.+|... .+.++.|++++|.+ ..++...|. ++.+|++|++++|.++.++ ..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56788888887777643 34578888888875 555555555 7888888888888888765 4578888888888888
Q ss_pred CCCCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHh---hcCCCCcEEEccCCCCC
Q 013440 118 CELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVI---SKLSQLEELYMGNGFSG 191 (443)
Q Consensus 118 ~~l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~ 191 (443)
|.+.. +..+..+++|++|++++|.++.+ |..+..+++|+.|++++|. +..+|...+ ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 88777 34577888888888888888755 4567788888888888854 445665444 45778888888887776
Q ss_pred cccccCCCchhhhhccCCCC--CCEEEeecCCCC
Q 013440 192 WEKVEGGSNASLVELERLTE--LTTLEIEVPDAE 223 (443)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 223 (443)
.... ..+..++. ++.|++.+|.+.
T Consensus 177 ~l~~--------~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPL--------TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCH--------HHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCH--------HHhhhccHhhcceEEecCCCcc
Confidence 5443 44555555 367777777663
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=7.3e-14 Score=122.98 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=111.2
Q ss_pred cEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcC
Q 013440 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (443)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~ 138 (443)
+.++.+++.. ..+|..+ ...|++|++++|.++.++. .+..+++|++|++++|.+.. +..+.++++|++|+++
T Consensus 14 ~~v~c~~~~l--~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGL--TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCC--SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCc--CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 5677777764 6666643 3678888888888887654 67888888888888888877 4778888888888888
Q ss_pred CCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEe
Q 013440 139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI 217 (443)
Q Consensus 139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 217 (443)
+|.++.+|.. +..+++|+.|++++|.+....+. .+..+++|+.|++++|.+..... ..+..+++|++|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAK--------GTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCT--------TTTTTCTTCCEEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEECH--------HHHhCCCCCCEEEe
Confidence 8888877765 57788888888888655443333 47788888888888887766554 45677788888888
Q ss_pred ecCCCC
Q 013440 218 EVPDAE 223 (443)
Q Consensus 218 ~~~~~~ 223 (443)
.+|.+.
T Consensus 160 ~~N~~~ 165 (220)
T 2v9t_B 160 AQNPFI 165 (220)
T ss_dssp CSSCEE
T ss_pred CCCCcC
Confidence 877763
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=8.1e-14 Score=122.68 Aligned_cols=149 Identities=13% Similarity=0.064 Sum_probs=118.8
Q ss_pred CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc--ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEE
Q 013440 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP--SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (443)
Q Consensus 61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p--~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~ 136 (443)
-+.++++++.. ..+|..+ ...+++|++++|.++.++ ..+..+++|++|++++|.+.. +..++++++|++|+
T Consensus 13 ~~~l~~s~n~l--~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKL--NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEeEeCCCCc--ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 35888888885 6677644 456789999999998863 347889999999999999888 35788999999999
Q ss_pred cCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEE
Q 013440 137 LAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL 215 (443)
Q Consensus 137 l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 215 (443)
+++|.++.++.. +..+++|+.|++++|.+....+. .+..+++|+.|++++|.+....+ ..++.+++|++|
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L 158 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAP--------GAFDTLHSLSTL 158 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCT--------TTTTTCTTCCEE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECH--------HHhcCCCCCCEE
Confidence 999999877654 78899999999999765554444 37888999999999988876654 667788899999
Q ss_pred EeecCCCC
Q 013440 216 EIEVPDAE 223 (443)
Q Consensus 216 ~l~~~~~~ 223 (443)
++++|.+.
T Consensus 159 ~L~~N~l~ 166 (220)
T 2v70_A 159 NLLANPFN 166 (220)
T ss_dssp ECCSCCEE
T ss_pred EecCcCCc
Confidence 99888764
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=2.4e-13 Score=120.43 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=123.1
Q ss_pred CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEE
Q 013440 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILS 136 (443)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~ 136 (443)
..+.++.+++.. ..+|..+ ..+|++|++++|.++.+ |..+..+++|++|++++|.+.. + ..+..+++|++|+
T Consensus 20 s~~~v~c~~~~l--~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRH--ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCc--CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 466788888774 6777644 48899999999999885 6778899999999999999887 3 5578899999999
Q ss_pred cCCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEE
Q 013440 137 LAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL 215 (443)
Q Consensus 137 l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 215 (443)
+++|.++.++.. +..+++|+.|++++|.+ ..+|.. +..+++|+.|++++|.+..... ..+..+++|+.|
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L 164 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRG-IERLTHLTHLALDQNQLKSIPH--------GAFDRLSSLTHA 164 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CSCCTT-GGGCTTCSEEECCSSCCCCCCT--------TTTTTCTTCCEE
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcc-cccCcc-cccCCCCCEEECCCCcCCccCH--------HHHhCCCCCCEE
Confidence 999999987765 67899999999999654 477765 6889999999999998876554 557788899999
Q ss_pred EeecCCCCC
Q 013440 216 EIEVPDAEI 224 (443)
Q Consensus 216 ~l~~~~~~~ 224 (443)
++.+|.+..
T Consensus 165 ~l~~N~~~c 173 (229)
T 3e6j_A 165 YLFGNPWDC 173 (229)
T ss_dssp ECTTSCBCT
T ss_pred EeeCCCccC
Confidence 999888754
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=1.1e-13 Score=116.29 Aligned_cols=137 Identities=22% Similarity=0.177 Sum_probs=75.3
Q ss_pred CCCCEEEcCCCccc--cccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCC-CchhhcCCCCCCEEecc
Q 013440 85 EGLKVLQFPGIGSS--SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLS 161 (443)
Q Consensus 85 ~~L~~L~l~~~~~~--~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~ 161 (443)
++|++|++++|.++ .+|..+..+++|++|++++|.+..+..+..+++|++|++++|.++. +|..+.++++|+.|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 55666666666655 4555555566666666666665555555556666666666666554 44445556666666666
Q ss_pred CCccccccch-HHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCC
Q 013440 162 NCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (443)
Q Consensus 162 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (443)
+|.+ ..++. ..+..+++|+.|++++|.+..... .....+..+++|++|++..|....+|.
T Consensus 104 ~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 104 GNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLND-----YRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp SSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTT-----HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHH-----HHHHHHHhCccCcEecCCCCChhhccc
Confidence 6433 22221 225556666666666665543321 001245566666666666666655554
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=1.3e-13 Score=131.11 Aligned_cols=161 Identities=24% Similarity=0.303 Sum_probs=133.4
Q ss_pred hhhhhhhccCCCCeEEeCCCCCCCCCCCcC---CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-
Q 013440 27 LEKKMEETIQKDPIAISLPHRDIQELPERL---QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS- 102 (443)
Q Consensus 27 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~- 102 (443)
+...+. .....++.|++++|.+..++... .+++|+.|++++|.+ ..++...|.++++|++|++++|.++.++.
T Consensus 30 l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 106 (361)
T 2xot_A 30 LPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106 (361)
T ss_dssp CSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred cCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC--CccChhhccCCCCCCEEECCCCcCCcCCHH
Confidence 444433 45677999999999998777543 789999999999996 66666667899999999999999998764
Q ss_pred cccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchhh----cCCCCCCEEeccCCccccccchHHhhc
Q 013440 103 SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEI----GQLTRLQLLDLSNCWWLEVIAPNVISK 176 (443)
Q Consensus 103 ~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~~----~~l~~L~~L~l~~~~~~~~~~~~~l~~ 176 (443)
.+..+++|++|++++|.+.. +..+..+++|++|++++|.++.+|..+ ..+++|+.|++++|. +..++...+..
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 185 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQK 185 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHH
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhh
Confidence 58899999999999999988 578899999999999999999998775 579999999999965 45677655788
Q ss_pred CCC--CcEEEccCCCCC
Q 013440 177 LSQ--LEELYMGNGFSG 191 (443)
Q Consensus 177 l~~--L~~L~l~~~~~~ 191 (443)
++. ++.|++.+|.+.
T Consensus 186 l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 186 LPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCHHHHTTEECCSSCEE
T ss_pred ccHhhcceEEecCCCcc
Confidence 886 488999998764
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=6.8e-13 Score=132.51 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=133.1
Q ss_pred cCCCCeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEE
Q 013440 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (443)
Q Consensus 35 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~ 114 (443)
..++++.|++++|.+..+| ..+++|+.|++++|.+ ..+|. + .+ +|++|++++|.++.+|. .+++|++|+
T Consensus 78 l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l--~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 78 LPPQITVLEITQNALISLP--ELPASLEYLDACDNRL--STLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYIN 146 (571)
T ss_dssp CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCC--SCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCC--CCcch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEe
Confidence 3578999999999999888 5689999999999986 44776 3 43 99999999999999887 689999999
Q ss_pred ecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCC-------cEEEccC
Q 013440 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL-------EELYMGN 187 (443)
Q Consensus 115 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-------~~L~l~~ 187 (443)
+++|.+..++. .+++|++|++++|.++.+|. +. ++|+.|++++|.+ ..+|. +.. +| +.|++++
T Consensus 147 Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L-~~lp~--~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 147 ADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL-ESLPA--VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp CCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC-SSCCC--CC----------CCEEEECCS
T ss_pred CCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC-Cchhh--HHH--hhhcccccceEEecCC
Confidence 99999988433 67899999999999999988 65 9999999999754 46665 333 66 9999999
Q ss_pred CCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCC
Q 013440 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEI 224 (443)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 224 (443)
|.+...+ ..+..+++|+.|++++|.+..
T Consensus 217 N~l~~lp---------~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 217 NRITHIP---------ENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SCCCCCC---------GGGGGSCTTEEEECCSSSCCH
T ss_pred CcceecC---------HHHhcCCCCCEEEeeCCcCCC
Confidence 9887543 556679999999999999843
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=2.4e-13 Score=114.27 Aligned_cols=107 Identities=24% Similarity=0.268 Sum_probs=49.0
Q ss_pred hcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCc--hhhcCCCCCCE
Q 013440 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQL 157 (443)
Q Consensus 82 ~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~ 157 (443)
..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. + ..++++++|++|++++|.++.+| ..+..+++|+.
T Consensus 46 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence 3444444444444444444 334444445555555444444 2 22233455555555555444443 34445555555
Q ss_pred EeccCCccccccch---HHhhcCCCCcEEEccCCCC
Q 013440 158 LDLSNCWWLEVIAP---NVISKLSQLEELYMGNGFS 190 (443)
Q Consensus 158 L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~ 190 (443)
|++++|.+.+ .+. ..+..+++|+.|+++.|..
T Consensus 125 L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 125 LDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555543322 222 2244555555555555543
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=1.3e-15 Score=152.71 Aligned_cols=180 Identities=18% Similarity=0.177 Sum_probs=112.9
Q ss_pred CCCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCC-------------CCCccCcHHHHhcCCCCCEEE-cCCCccccc
Q 013440 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEG-------------NGPMQVSDHFFEGMEGLKVLQ-FPGIGSSSL 100 (443)
Q Consensus 36 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~l~~L~~L~-l~~~~~~~~ 100 (443)
.+.+++|+++++.++.+|..+ .+++|+.|++++|. . .. .++..++.+++|+.|+ ++.+.+..+
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~-~~-~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP-LL-YEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT-GG-GHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhccc-cc-CCHHHHHHHHhcccCcchhhcccchh
Confidence 344555555555555555444 55555555554432 1 11 1222234555555555 343332221
Q ss_pred cc------cccC--CCCCcEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchH
Q 013440 101 PS------SLGR--LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPN 172 (443)
Q Consensus 101 p~------~l~~--l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 172 (443)
+. .+.. ...|++|++++|.++.++.++.+++|+.|++++|.++.+|..++++++|+.|++++|.+. .+| .
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~ 503 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-G
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-c
Confidence 11 0111 125778888888887744488888888888888888888888888888888888886544 466 3
Q ss_pred HhhcCCCCcEEEccCCCCCccc-ccCCCchhhhhccCCCCCCEEEeecCCCCCCCCc
Q 013440 173 VISKLSQLEELYMGNGFSGWEK-VEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (443)
Q Consensus 173 ~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (443)
++.+++|+.|++++|.+.... + ..++.+++|+.|++++|.+..+|..
T Consensus 504 -l~~l~~L~~L~Ls~N~l~~~~~p--------~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 504 -VANLPRLQELLLCNNRLQQSAAI--------QPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp -GTTCSSCCEEECCSSCCCSSSTT--------GGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred -cCCCCCCcEEECCCCCCCCCCCc--------HHHhcCCCCCEEEecCCcCCCCccH
Confidence 778888888888888776553 3 6677888888888888887666543
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=3.5e-13 Score=110.82 Aligned_cols=122 Identities=20% Similarity=0.198 Sum_probs=72.1
Q ss_pred CCCCeEEeCCCCCCC--CCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-ccccccCCCCCc
Q 013440 36 QKDPIAISLPHRDIQ--ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQ 111 (443)
Q Consensus 36 ~~~l~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~p~~l~~l~~L~ 111 (443)
++++++|+++++.+. .++... .+++|+.|++++|.. ..+ ..+.++++|++|++++|.++. +|..+..+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC--CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC--CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 355777777777665 555543 666667777766664 223 224566666666666666665 555555566666
Q ss_pred EEEecCCCCCC-c--ccccCCCCCCEEEcCCCCCCCCch----hhcCCCCCCEEecc
Q 013440 112 TLCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQLPV----EIGQLTRLQLLDLS 161 (443)
Q Consensus 112 ~L~l~~~~l~~-~--~~~~~l~~L~~L~l~~~~~~~lp~----~~~~l~~L~~L~l~ 161 (443)
+|++++|.+.. + ..++.+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666666655 2 555556666666666665554443 34555555555543
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=4.6e-13 Score=113.47 Aligned_cols=102 Identities=19% Similarity=0.115 Sum_probs=48.0
Q ss_pred CCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-ccc-ccCCCCCCEEEcCCCCCCCCch--hhcCCCCCCEEecc
Q 013440 86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAA-IGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLS 161 (443)
Q Consensus 86 ~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~-~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~ 161 (443)
+|++|++++|.++.+ +.+..+++|++|++++|.+.. +.. ++.+++|++|++++|.++.+|. .+.++++|+.|+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 444444444444444 334444555555555554444 222 2445555555555555544444 44455555555555
Q ss_pred CCccccccchH---HhhcCCCCcEEEccCCC
Q 013440 162 NCWWLEVIAPN---VISKLSQLEELYMGNGF 189 (443)
Q Consensus 162 ~~~~~~~~~~~---~l~~l~~L~~L~l~~~~ 189 (443)
+|.+. .++.. ++..+++|+.|+++.|.
T Consensus 122 ~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 122 RNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 54332 23321 24455555555555543
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=6.3e-13 Score=109.31 Aligned_cols=102 Identities=23% Similarity=0.308 Sum_probs=47.7
Q ss_pred CCCcEEEcccCCCCC-ccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC--cccccCCCCCCEE
Q 013440 59 PNLQLFLLYTEGNGP-MQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEIL 135 (443)
Q Consensus 59 ~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L 135 (443)
++|+.|++++|.. . ..++.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +..++.+++|++|
T Consensus 17 ~~l~~L~l~~n~l-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRS-NEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBC-BTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcC-ChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4455555555543 2 233332 24455555555555555444 344445555555555555444 2233334555555
Q ss_pred EcCCCCCCCCc--hhhcCCCCCCEEeccCC
Q 013440 136 SLAYSNINQLP--VEIGQLTRLQLLDLSNC 163 (443)
Q Consensus 136 ~l~~~~~~~lp--~~~~~l~~L~~L~l~~~ 163 (443)
++++|.++.++ ..+.++++|+.|++++|
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 55555444432 34444555555555543
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=3.3e-12 Score=109.82 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=102.6
Q ss_pred eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcH-HHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecC
Q 013440 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (443)
Q Consensus 40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~ 117 (443)
+.++++++.++.+|... .+.++.|++++|.+ ..++. .+|..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888888888754 23889999999985 44443 3468899999999999998875 67788899999999999
Q ss_pred CCCCC--cccccCCCCCCEEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccc
Q 013440 118 CELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIA 170 (443)
Q Consensus 118 ~~l~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~ 170 (443)
|.+.. +..++++++|++|++++|.++.+ |..+..+++|+.|++++|.+....+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99887 35578889999999999988854 6668888999999998887666554
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=1.7e-12 Score=110.02 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=102.7
Q ss_pred hhccCCCCeEEeCCCCCCCCCCCcCCCC-CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccc-cCCCC
Q 013440 32 EETIQKDPIAISLPHRDIQELPERLQCP-NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLIN 109 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l-~~l~~ 109 (443)
+...+.+++.|++.+|.+..++....+. +|+.|++++|.. ..++ .+.++++|++|++++|.++.+|+.+ ..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l--~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC--Cccc--ccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4456778889999998888777655544 899999998886 3442 2578889999999999888877554 78889
Q ss_pred CcEEEecCCCCCC-cc--cccCCCCCCEEEcCCCCCCCCchh----hcCCCCCCEEeccCCcc
Q 013440 110 LQTLCLDWCELAD-IA--AIGQLKKLEILSLAYSNINQLPVE----IGQLTRLQLLDLSNCWW 165 (443)
Q Consensus 110 L~~L~l~~~~l~~-~~--~~~~l~~L~~L~l~~~~~~~lp~~----~~~l~~L~~L~l~~~~~ 165 (443)
|++|++++|.+.. +. .++.+++|++|++++|.++.+|.. +..+++|+.|++++|..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999999988877 33 678888999999999988877764 78888999998888654
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=1.7e-12 Score=134.30 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=88.9
Q ss_pred CCCeEEeCCCCCCCCCCCcC-CCCCCcEEEccc-----CCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCC
Q 013440 37 KDPIAISLPHRDIQELPERL-QCPNLQLFLLYT-----EGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (443)
Q Consensus 37 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~-----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L 110 (443)
+.+++|.+.++.+...+... ....|+.+.+.. |.. .++...+..+..|++|++++|.+..+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM---VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce---ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 45777888777775544322 333333333322 221 234445677888888888888888888777788888
Q ss_pred cEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440 111 QTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (443)
Q Consensus 111 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 189 (443)
++|++++|.+.. +..++++++|++|+|++|.++.+|..++++++|+.|++++|.+ +.+|.. ++.+++|+.|++++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSS-TTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChh-hhcCCCccEEeCCCCc
Confidence 888888888877 6777888888888888888888888888888888888888644 577765 7788888888888887
Q ss_pred CCcccc
Q 013440 190 SGWEKV 195 (443)
Q Consensus 190 ~~~~~~ 195 (443)
+....+
T Consensus 328 l~~~~p 333 (727)
T 4b8c_D 328 LEKQFL 333 (727)
T ss_dssp CCSHHH
T ss_pred cCCCCh
Confidence 765443
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=4.9e-13 Score=138.25 Aligned_cols=131 Identities=21% Similarity=0.221 Sum_probs=111.0
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEE
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEIL 135 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L 135 (443)
.++.|+.|++++|.+ ..++..++ ++++|++|+|++|.++.+|..++.+++|++|++++|.+.. |..++++.+|++|
T Consensus 222 ~l~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 789999999999996 57888775 8999999999999999999999999999999999999988 7889999999999
Q ss_pred EcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCC-CCcEEEccCCCCC
Q 013440 136 SLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSG 191 (443)
Q Consensus 136 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~ 191 (443)
+|++|.++.+|..++++++|+.|++++|.+.+..|.. +..+. .+..+++.+|.+.
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCC
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCccc
Confidence 9999999999999999999999999998877666654 33321 1223455555543
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=1.1e-11 Score=104.98 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=99.5
Q ss_pred CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCCcEEEecC
Q 013440 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCLDW 117 (443)
Q Consensus 39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L~~L~l~~ 117 (443)
.+.+++.++++..+|... .++|+.|++++|.. ..++...|.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356778888887777433 47888999998885 566666667888999999999888886644 57888888999888
Q ss_pred CCCCC-c-ccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccccccc
Q 013440 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIA 170 (443)
Q Consensus 118 ~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~ 170 (443)
|.+.. + ..++.+++|++|++++|.++.+|.. +..+++|+.|++++|.+....+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88877 3 4467888888888888888877765 4678888888888877655544
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=6.4e-12 Score=107.97 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=57.2
Q ss_pred cEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc--ccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEc
Q 013440 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS--LGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSL 137 (443)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~--l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l 137 (443)
++++++++.. ..+|..+ ...|++|++++|.++.++.. ++.+++|++|++++|.+.. +..++++++|++|++
T Consensus 11 ~~l~~s~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGL--KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCC--SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCc--CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 4555555543 4444432 12555555555555554432 4555555555555555544 244455555555555
Q ss_pred CCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (443)
Q Consensus 138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 189 (443)
++|.++.++.. +.++++|+.|++++|.+.+..|.. +..+++|++|++++|.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCC
Confidence 55555533322 444555555555554333322322 3444444444444443
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=8.5e-12 Score=107.24 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=86.6
Q ss_pred eEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCC
Q 013440 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWC 118 (443)
Q Consensus 40 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~ 118 (443)
+.++++++.+..+|... .++|+.|++++|.+ ..+|.. |.++.+|++|++++|.++.++ ..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i--~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQF--TLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCC--CSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcC--chhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46777777777776543 35777788877775 456643 477777888888877777754 45777777777777777
Q ss_pred CCCC--cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCcccc
Q 013440 119 ELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLE 167 (443)
Q Consensus 119 ~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~ 167 (443)
.+.. +..++.+++|++|++++|.++.+|.. +..+++|+.|++.+|+...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7766 34577777777777777777766654 6667777777777765443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=2.2e-11 Score=104.60 Aligned_cols=126 Identities=18% Similarity=0.217 Sum_probs=107.8
Q ss_pred CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcC
Q 013440 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (443)
Q Consensus 61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~ 138 (443)
-+.++++++.. ..+|..+ ...|++|++++|.++.+|..+..+++|++|++++|.+.. +..+.++++|++|+++
T Consensus 12 ~~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKGL--KVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSCC--SSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCC--CcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 36788888885 6777654 468999999999999999999999999999999999988 4678999999999999
Q ss_pred CCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440 139 YSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (443)
Q Consensus 139 ~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (443)
+|.++.++. .+..+++|+.|++++|.+ ..++...+..+++|+.|++++|.+.-
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCeec
Confidence 999997765 589999999999999654 56666558889999999999987643
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=2e-11 Score=122.36 Aligned_cols=176 Identities=18% Similarity=0.116 Sum_probs=125.0
Q ss_pred hhccCCCCeEEeCCCCC-------------C-CCCCCcC-CCCCCcEEE-cccCCCCCccCcHHH-----Hh--cCCCCC
Q 013440 32 EETIQKDPIAISLPHRD-------------I-QELPERL-QCPNLQLFL-LYTEGNGPMQVSDHF-----FE--GMEGLK 88 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~-------------~-~~l~~~~-~~~~L~~L~-l~~~~~~~~~~~~~~-----~~--~l~~L~ 88 (443)
+++.+++|+.|++.++. . ...|... .+++|+.|+ ++.+.. ..++.-. +. ....|+
T Consensus 367 ~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--~~L~~l~l~~n~i~~l~~~~L~ 444 (567)
T 1dce_A 367 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--DDLRSKFLLENSVLKMEYADVR 444 (567)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--chhhhhhhhcccccccCccCce
Confidence 45666677777775543 1 1222222 566777777 444321 1111100 01 123689
Q ss_pred EEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCcccc
Q 013440 89 VLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167 (443)
Q Consensus 89 ~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 167 (443)
+|++++|.++.+|. ++.+++|++|++++|.+.. |..++++++|+.|++++|.++.+| .++++++|+.|++++|.+.+
T Consensus 445 ~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~ 522 (567)
T 1dce_A 445 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQ 522 (567)
T ss_dssp EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCS
T ss_pred EEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCC
Confidence 99999999999887 8999999999999999888 788999999999999999999888 89999999999999976655
Q ss_pred cc-chHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEe
Q 013440 168 VI-APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI 217 (443)
Q Consensus 168 ~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 217 (443)
.. |.. ++.+++|+.|++++|.+...++ .....+..+++|+.|++
T Consensus 523 ~~~p~~-l~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 523 SAAIQP-LVSCPRLVLLNLQGNSLCQEEG-----IQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSTTGG-GGGCTTCCEEECTTSGGGGSSS-----CTTHHHHHCTTCSEEEC
T ss_pred CCCcHH-HhcCCCCCEEEecCCcCCCCcc-----HHHHHHHHCcccCccCC
Confidence 44 654 7899999999999998866543 11123455788888753
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=1.4e-13 Score=119.01 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=49.3
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCCcccccCCCCCCEEE
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~ 136 (443)
.+++|+.|++++|.. ..++ . +.++++|++|++++|.++.+|..+..+++|++|++++|.+..++.++.+++|++|+
T Consensus 46 ~l~~L~~L~ls~n~l--~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~ 121 (198)
T 1ds9_A 46 TLKACKHLALSTNNI--EKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121 (198)
T ss_dssp HTTTCSEEECSEEEE--SCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEE
T ss_pred cCCCCCEEECCCCCC--cccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEE
Confidence 445555555555543 2233 1 34455555555555555544444444455555555555544433444445555555
Q ss_pred cCCCCCCCCch--hhcCCCCCCEEeccCCc
Q 013440 137 LAYSNINQLPV--EIGQLTRLQLLDLSNCW 164 (443)
Q Consensus 137 l~~~~~~~lp~--~~~~l~~L~~L~l~~~~ 164 (443)
+++|.++.++. .+..+++|+.|++++|.
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 55554444332 34445555555554443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=1.2e-10 Score=98.60 Aligned_cols=125 Identities=20% Similarity=0.279 Sum_probs=72.3
Q ss_pred CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccc-cccCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEEc
Q 013440 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL 137 (443)
Q Consensus 61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l 137 (443)
.+.++++++.. ..+|..+ ...|++|++++|.++.++. .+..+++|++|++++|.+.. + ..++.+++|++|++
T Consensus 9 ~~~l~~~~~~l--~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGL--TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCC--SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCC--ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 35566666653 4455432 3566777777776666543 34566666666666666665 2 33556666666666
Q ss_pred CCCCCCCCchh-hcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (443)
Q Consensus 138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (443)
++|.++.+|.. +.++++|+.|++++|.+ ..++...+..+++|++|++++|.+.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCCee
Confidence 66666655543 45666666666666433 3444433455556666666555443
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=2.1e-13 Score=118.01 Aligned_cols=156 Identities=20% Similarity=0.174 Sum_probs=116.3
Q ss_pred CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccccccccCCCCCcEEEecCCCCCC-cccccCCCCCCEEEcCC
Q 013440 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAY 139 (443)
Q Consensus 61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~ 139 (443)
++...+.+..-....++.. +.++++|++|++++|.++.+| .+..+++|++|++++|.+.. +..+..+++|++|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 3444444432113455554 589999999999999999988 88999999999999999888 56667789999999999
Q ss_pred CCCCCCchhhcCCCCCCEEeccCCccccccch-HHhhcCCCCcEEEccCCCCCcccccCC--CchhhhhccCCCCCCEEE
Q 013440 140 SNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGG--SNASLVELERLTELTTLE 216 (443)
Q Consensus 140 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~l~~l~~L~~L~ 216 (443)
|.++.+| .+..+++|+.|++++|.+. .++. ..+..+++|++|++++|.+....+... .......+..+++|+.|+
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CcCCcCC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999887 6889999999999996544 3332 347899999999999998754432100 001113478899999886
Q ss_pred eecCCC
Q 013440 217 IEVPDA 222 (443)
Q Consensus 217 l~~~~~ 222 (443)
++.+
T Consensus 181 --~~~i 184 (198)
T 1ds9_A 181 --GMPV 184 (198)
T ss_dssp --CGGG
T ss_pred --Cccc
Confidence 4444
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=5.4e-11 Score=111.39 Aligned_cols=285 Identities=11% Similarity=0.014 Sum_probs=151.7
Q ss_pred CCCCCEEEcCCCccccccccccC-CCCCcEEEecCCCCCC-cccccCCCCCCEEEcCCCCCCCCch-hhcC--------C
Q 013440 84 MEGLKVLQFPGIGSSSLPSSLGR-LINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQ--------L 152 (443)
Q Consensus 84 l~~L~~L~l~~~~~~~~p~~l~~-l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~--------l 152 (443)
+.+++.|.++++--..-...+.. +++|++|+++++.+.. ....+.++.+..+.+..+ .+|. .+.+ +
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccccc
Confidence 56678888876521111122233 7788888888888774 111122222344444444 2333 2455 7
Q ss_pred CCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecC----CCCCCCCc
Q 013440 153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP----DAEILPPD 228 (443)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~----~~~~~~~~ 228 (443)
++|+.+.+.. .+..++...|..|++|+.+.+..+.+..... ..+.++.++..+..... ....+...
T Consensus 101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~--------~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 101 QTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP--------EALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp TTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECT--------TSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred CCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccch--------hhhcCCCceEEecCcchhhhhcccccccc
Confidence 8888888876 3455665567788888888888776654443 34445555554443321 11122222
Q ss_pred c--ccccCc-EEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeeccccCCccccccccc
Q 013440 229 F--VSVELQ-RYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELD 305 (443)
Q Consensus 229 ~--~~~~L~-~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 305 (443)
. .+..|+ .+.+.............--...++..+.+.++-.... ...+...+++|+.+++.++.........|.
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~---~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNAD---FKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHH---HHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHH---HHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 1 234444 2222100000000000001244555555555311111 111223347888998887654333333344
Q ss_pred cCCCCCCccEEEEecccCceeecccccccccCccCccc-ceeccccccccccccccccccccccccceeeeccCcCcccc
Q 013440 306 DGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLE-ALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYL 384 (443)
Q Consensus 306 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~ 384 (443)
.|++|+++++.++ ++.++. .....+++|+ .+.+.+ .++.++...| ..+++|+++++.+ ..++.+
T Consensus 248 ---~~~~L~~l~l~~n--i~~I~~----~aF~~~~~L~~~l~l~~--~l~~I~~~aF---~~c~~L~~l~l~~-n~i~~I 312 (329)
T 3sb4_A 248 ---QKKYLLKIKLPHN--LKTIGQ----RVFSNCGRLAGTLELPA--SVTAIEFGAF---MGCDNLRYVLATG-DKITTL 312 (329)
T ss_dssp ---TCTTCCEEECCTT--CCEECT----TTTTTCTTCCEEEEECT--TCCEECTTTT---TTCTTEEEEEECS-SCCCEE
T ss_pred ---CCCCCCEEECCcc--cceehH----HHhhCChhccEEEEEcc--cceEEchhhh---hCCccCCEEEeCC-CccCcc
Confidence 7888999988875 666642 1345667787 888876 6777765433 3577888888755 577777
Q ss_pred cChhhhhcccccceee
Q 013440 385 FSFSMAKNLLRLQKVK 400 (443)
Q Consensus 385 ~~~~~~~~~~~L~~L~ 400 (443)
+..+ ..++++|+.|+
T Consensus 313 ~~~a-F~~~~~L~~ly 327 (329)
T 3sb4_A 313 GDEL-FGNGVPSKLIY 327 (329)
T ss_dssp CTTT-TCTTCCCCEEE
T ss_pred chhh-hcCCcchhhhc
Confidence 6543 45677777665
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=2e-11 Score=114.28 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=47.7
Q ss_pred CCCCeEEeCCCCCCC--------------------CCCCcC--C--------CCCCcEEEcccCCCCCccCcHHHHhcCC
Q 013440 36 QKDPIAISLPHRDIQ--------------------ELPERL--Q--------CPNLQLFLLYTEGNGPMQVSDHFFEGME 85 (443)
Q Consensus 36 ~~~l~~L~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~~l~ 85 (443)
+++++.|+++++.+. .++... + |++|+.|++.+ . ...++...|.+|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~--i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K--IKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T--CCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c--ccchhHHHhhcCc
Confidence 788999999988876 222222 4 67777777766 3 3556666667777
Q ss_pred CCCEEEcCCCcccccc-ccccCCCCCcEEEe
Q 013440 86 GLKVLQFPGIGSSSLP-SSLGRLINLQTLCL 115 (443)
Q Consensus 86 ~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l 115 (443)
+|+.++++.+.+..++ ..|.++.++.++..
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecC
Confidence 7777777777665533 33455555554443
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=1e-09 Score=92.49 Aligned_cols=98 Identities=20% Similarity=0.211 Sum_probs=54.6
Q ss_pred cEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEEcC
Q 013440 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLA 138 (443)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~ 138 (443)
+.++++++.. ..+|..+ ...|++|++++|.++.+ |..+..+++|++|++++|.+.. + ..++++++|++|+++
T Consensus 15 ~~l~~~~n~l--~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRL--ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCC--CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 4556665553 4455433 25566666666666554 3445556666666666666555 2 224556666666666
Q ss_pred CCCCCCCchh-hcCCCCCCEEeccCCc
Q 013440 139 YSNINQLPVE-IGQLTRLQLLDLSNCW 164 (443)
Q Consensus 139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~ 164 (443)
+|.++.+|.. +.++++|+.|++++|.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCC
Confidence 6666555543 5555666666665544
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=1e-09 Score=92.08 Aligned_cols=101 Identities=23% Similarity=0.202 Sum_probs=63.3
Q ss_pred CcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCCcEEEecCCCCCC-c-ccccCCCCCCEEEc
Q 013440 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL 137 (443)
Q Consensus 61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l 137 (443)
.+.++++++.. ..+|..+ ...|++|++++|.++.+ |..+..+++|++|++++|.+.. + ..+..+++|++|++
T Consensus 11 ~~~l~~s~n~l--~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSL--ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCc--CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 45666666664 4555533 36667777777776665 4456666777777777776666 2 33566667777777
Q ss_pred CCCCCCCCchh-hcCCCCCCEEeccCCccc
Q 013440 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWL 166 (443)
Q Consensus 138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~ 166 (443)
++|.++.+|.. +.++++|+.|++++|.+.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 77766666553 566666666666665543
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=1.4e-09 Score=91.56 Aligned_cols=106 Identities=17% Similarity=0.212 Sum_probs=91.1
Q ss_pred CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCCcEEEecC
Q 013440 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCLDW 117 (443)
Q Consensus 39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L~~L~l~~ 117 (443)
.+.++++++.+..+|.... ++|+.|++++|.+ ..++...|.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP-TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC-TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC-CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3689999999998887554 8999999999996 566555578999999999999999998865 58999999999999
Q ss_pred CCCCC-c-ccccCCCCCCEEEcCCCCCCCCch
Q 013440 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV 147 (443)
Q Consensus 118 ~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~ 147 (443)
|.+.. + ..++.+++|++|++++|.+...+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99988 4 458899999999999998875544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=1.3e-09 Score=91.47 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=89.6
Q ss_pred CeEEeCCCCCCCCCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccccc-ccCCCCCcEEEecC
Q 013440 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCLDW 117 (443)
Q Consensus 39 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~-l~~l~~L~~L~l~~ 117 (443)
.+.++++++.++.+|... .+.|+.|++++|.+ ..++...|.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 468999999999888755 48999999999996 666555578999999999999999998765 68999999999999
Q ss_pred CCCCC-c-ccccCCCCCCEEEcCCCCCCCC
Q 013440 118 CELAD-I-AAIGQLKKLEILSLAYSNINQL 145 (443)
Q Consensus 118 ~~l~~-~-~~~~~l~~L~~L~l~~~~~~~l 145 (443)
|.+.. + ..+..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99988 4 4688999999999999988733
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.99 E-value=2.1e-10 Score=108.93 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=87.2
Q ss_pred CCCcEEEcccCCCCCccCcHHH---Hh-cCCCCCEEEcCCCcccc--ccccccCCCCCcEEEecCCCCCC--cccc----
Q 013440 59 PNLQLFLLYTEGNGPMQVSDHF---FE-GMEGLKVLQFPGIGSSS--LPSSLGRLINLQTLCLDWCELAD--IAAI---- 126 (443)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~---~~-~l~~L~~L~l~~~~~~~--~p~~l~~l~~L~~L~l~~~~l~~--~~~~---- 126 (443)
+.|+.|++++|.+ .......+ +. ....|++|++++|.++. +..-...+.+|++|++++|.+.+ ...+
T Consensus 72 ~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCC-CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCC-CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4566666666664 22111111 11 22567777777776643 22222334566777777776655 2222
Q ss_pred -cCCCCCCEEEcCCCCCC-----CCchhhcCCCCCCEEeccCCccccccc---hHHhhcCCCCcEEEccCCCCCcccccC
Q 013440 127 -GQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIA---PNVISKLSQLEELYMGNGFSGWEKVEG 197 (443)
Q Consensus 127 -~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~ 197 (443)
...++|++|++++|.++ .++..+..+++|++|++++|.+.+... ...+...++|++|++++|.+.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~-- 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-- 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH--
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH--
Confidence 23566777777777665 234445666777777777765433211 1124556677777777776654322
Q ss_pred CCchhhhhccCCCCCCEEEeecCCCCC
Q 013440 198 GSNASLVELERLTELTTLEIEVPDAEI 224 (443)
Q Consensus 198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~ 224 (443)
......+...++|++|++++|.+..
T Consensus 229 --~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 --LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp --HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred --HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 1222344556677777777776643
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.99 E-value=1.4e-10 Score=110.16 Aligned_cols=161 Identities=14% Similarity=0.022 Sum_probs=120.2
Q ss_pred ccCCCCeEEeCCCCCCCCCC-----CcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-----cc
Q 013440 34 TIQKDPIAISLPHRDIQELP-----ERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-----LP 101 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~p 101 (443)
...+.++.|++++|.+.... ... ..++|+.|++++|.. .......++..+.+|++|++++|.++. +.
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 45578999999999985422 111 347999999999986 444344455567899999999999864 22
Q ss_pred ccc-cCCCCCcEEEecCCCCCC--c----ccccCCCCCCEEEcCCCCCC-----CCchhhcCCCCCCEEeccCCcccccc
Q 013440 102 SSL-GRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVI 169 (443)
Q Consensus 102 ~~l-~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~ 169 (443)
..+ ...++|++|++++|.+.+ . ..+..+++|++|++++|.++ .++..+...++|+.|++++|.+.+..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 333 357899999999999866 2 44578899999999999987 24566778899999999998765432
Q ss_pred ch---HHhhcCCCCcEEEccCCCCCcccc
Q 013440 170 AP---NVISKLSQLEELYMGNGFSGWEKV 195 (443)
Q Consensus 170 ~~---~~l~~l~~L~~L~l~~~~~~~~~~ 195 (443)
.. ..+...++|++|++++|.+.....
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 22 125567899999999998865543
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.90 E-value=5.2e-08 Score=93.39 Aligned_cols=302 Identities=12% Similarity=0.111 Sum_probs=152.0
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCC
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~ 133 (443)
+|.+|+.+.+..+ ...+....|.+|.+|+.+++..+ ++.++ ..+.+|.+|+.+.+..+ +.. ...+.++..+.
T Consensus 69 ~c~~L~~i~lp~~---i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 69 GCRKVTEIKIPST---VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TCTTEEEEECCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred CCCCceEEEeCCC---ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 6777888887643 35566666778888888887654 44443 34566777766555432 111 23344443222
Q ss_pred EEEcCCCCCCCC-chhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCC
Q 013440 134 ILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212 (443)
Q Consensus 134 ~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 212 (443)
...... +..+ ...+.++++|+.+.+..+ ...+....+..+.+|+.+.+..+ +..... ..+.++..|
T Consensus 144 ~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~--------~~F~~~~~L 210 (394)
T 4fs7_A 144 ITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRD--------YCFAECILL 210 (394)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECT--------TTTTTCTTC
T ss_pred cccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCc--------hhhcccccc
Confidence 221111 1211 224666777777777552 23344444666777777766543 111111 334555666
Q ss_pred CEEEeecCCCCCCCCccccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccceeecc
Q 013440 213 TTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLE 292 (443)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 292 (443)
+.+.+..+....-.....+..|+.+.+... ........+..+..++.+.+..+.. .+. ...+. .+..++.+...
T Consensus 211 ~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~--~i~-~~~F~-~~~~l~~~~~~ 284 (394)
T 4fs7_A 211 ENMEFPNSLYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKL--RIG-GSLFY-NCSGLKKVIYG 284 (394)
T ss_dssp CBCCCCTTCCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTC--EEC-SCTTT-TCTTCCEEEEC
T ss_pred ceeecCCCceEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcc--eee-ccccc-cccccceeccC
Confidence 655554333211111113356666655211 0111112235666777776665322 111 11122 22455555443
Q ss_pred ccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceeccccccccccccccccccccccccce
Q 013440 293 TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRI 372 (443)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~ 372 (443)
.... ....+ ..+.+|+.+.+.+ +++.+.+. ....+.+|+.+.+.. .++.++...+ ..+.+|++
T Consensus 285 ~~~i---~~~~F---~~~~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~aF---~~c~~L~~ 347 (394)
T 4fs7_A 285 SVIV---PEKTF---YGCSSLTEVKLLD--SVKFIGEE----AFESCTSLVSIDLPY--LVEEIGKRSF---RGCTSLSN 347 (394)
T ss_dssp SSEE---CTTTT---TTCTTCCEEEECT--TCCEECTT----TTTTCTTCCEECCCT--TCCEECTTTT---TTCTTCCE
T ss_pred ceee---ccccc---ccccccccccccc--ccceechh----hhcCCCCCCEEEeCC--cccEEhHHhc---cCCCCCCE
Confidence 3211 11112 2677888887754 35555311 234456777777753 4666654433 23567777
Q ss_pred eeeccCcCcccccChhhhhcccccceeeec
Q 013440 373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVE 402 (443)
Q Consensus 373 L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~ 402 (443)
+.+.. .++.++..+ ..+|.+|+.+.+.
T Consensus 348 i~lp~--~l~~I~~~a-F~~C~~L~~i~lp 374 (394)
T 4fs7_A 348 INFPL--SLRKIGANA-FQGCINLKKVELP 374 (394)
T ss_dssp ECCCT--TCCEECTTT-BTTCTTCCEEEEE
T ss_pred EEECc--cccEehHHH-hhCCCCCCEEEEC
Confidence 77743 366666543 3667777777663
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=3.2e-08 Score=94.75 Aligned_cols=255 Identities=14% Similarity=0.148 Sum_probs=155.0
Q ss_pred CCCeEEeCCCCCCCCCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEE
Q 013440 37 KDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLC 114 (443)
Q Consensus 37 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~ 114 (443)
..++.+.+.+ .++.++... .-.+|+.+.+..+ ...+....|.++ .|+.+.+.. .++.++ ..|.+|.+|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~---i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG---LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT---CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC---ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 5566666654 233333222 1236888887765 355666666664 688888875 555544 4577888888888
Q ss_pred ecCCCCCC-c-ccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCC
Q 013440 115 LDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (443)
Q Consensus 115 l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (443)
+..+.+.. + ..+. +.+|+.+.+..+ ++.++. .+.++++|+.+.+..+ ...+....|.. .+|+.+.+..+ +.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~ 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc
Confidence 88877766 3 3444 578888888744 555544 4677888888888762 34555544655 67888887432 22
Q ss_pred cccccCCCchhhhhccCCCCCCEEEeecCCCC-----CCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEE
Q 013440 192 WEKVEGGSNASLVELERLTELTTLEIEVPDAE-----ILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMML 264 (443)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 264 (443)
.... ..+.++++|+.+.+..+... .++... .|++|+.+.+. .. ........+..|.+|+.+.+
T Consensus 261 ~I~~--------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~-i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 261 NIAS--------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES-IRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EECT--------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT-CCEECTTTTTTCCSCCEEEE
T ss_pred EECh--------hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc-eEEEhhhhhcCCCCccEEEE
Confidence 2222 55778888888888776554 344443 45778877763 11 11111233567888888888
Q ss_pred cCccccccccccchhhHhhcccceeeccccCCccccccccccCCCCC-CccEEEEecc
Q 013440 265 KGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFP-RLKRLLVTDC 321 (443)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~ 321 (443)
..+ + ..+. ..++..+ +|+.+.+.++.........+. .++ +++.|.+-..
T Consensus 331 p~~-l-~~I~-~~aF~~~--~L~~l~l~~n~~~~l~~~~F~---~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 331 PAN-V-TQIN-FSAFNNT--GIKEVKVEGTTPPQVFEKVWY---GFPDDITVIRVPAE 380 (401)
T ss_dssp CTT-C-CEEC-TTSSSSS--CCCEEEECCSSCCBCCCSSCC---CSCTTCCEEEECGG
T ss_pred Ccc-c-cEEc-HHhCCCC--CCCEEEEcCCCCccccccccc---CCCCCccEEEeCHH
Confidence 654 2 2222 2234333 799999988755443333333 453 6788888764
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.78 E-value=3.9e-07 Score=87.29 Aligned_cols=300 Identities=14% Similarity=0.107 Sum_probs=177.5
Q ss_pred ccCCCCeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCccccc-cccccCCCCC
Q 013440 34 TIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINL 110 (443)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-p~~l~~l~~L 110 (443)
..+.+|+.+.+.. .++.+.... +|.+|+.+++..+ ...+....|.++..|+.+.+..+ +..+ ...|.++..+
T Consensus 68 ~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 68 QGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS---VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred hCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC---ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 4567888888874 365555433 8999999999765 35667777889999998877654 3332 2345555444
Q ss_pred cEEEecCCCCCCcccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCC
Q 013440 111 QTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (443)
Q Consensus 111 ~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 189 (443)
...............+.++.+|+.+.+..+ +..++. .+.++.+|+.+.+..+ ...+....+..+..|+.+.+..+.
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc
Confidence 333322222111366788999999998765 333433 4778889999888763 444555557788888887765432
Q ss_pred CCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCc
Q 013440 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (443)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (443)
..- . .......+|+.+.+... ...+.... .+..|+.+.+..... ......+..+..++.+.....
T Consensus 220 ~~i--~--------~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 220 YYL--G--------DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CEE--C--------TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSS
T ss_pred eEe--e--------hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCce
Confidence 211 0 12233457777777533 23333332 457777777632211 011123356777777766653
Q ss_pred cccccccccchhhHhhcccceeeccccCCcccccc-ccccCCCCCCccEEEEecccCceeecccccccccCccCccccee
Q 013440 268 KKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVH-ELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALS 346 (443)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 346 (443)
.. + ...+. .+.+|+.+.+... +..+.. .+. .|.+|+.+.|.+ +++.+... .-..+.+|+.+.
T Consensus 287 ~i----~-~~~F~-~~~~L~~i~l~~~--i~~I~~~aF~---~c~~L~~i~lp~--~v~~I~~~----aF~~c~~L~~i~ 349 (394)
T 4fs7_A 287 IV----P-EKTFY-GCSSLTEVKLLDS--VKFIGEEAFE---SCTSLVSIDLPY--LVEEIGKR----SFRGCTSLSNIN 349 (394)
T ss_dssp EE----C-TTTTT-TCTTCCEEEECTT--CCEECTTTTT---TCTTCCEECCCT--TCCEECTT----TTTTCTTCCEEC
T ss_pred ee----c-ccccc-ccccccccccccc--cceechhhhc---CCCCCCEEEeCC--cccEEhHH----hccCCCCCCEEE
Confidence 21 1 11222 2378888887542 333322 233 788999999864 36666311 334567888888
Q ss_pred ccccccccccccccccccccccccceeeec
Q 013440 347 LMFLTNLETICYSQLREDQSFSNLRIINVD 376 (443)
Q Consensus 347 l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~ 376 (443)
+.. .++.++...+ ..+++|+++++.
T Consensus 350 lp~--~l~~I~~~aF---~~C~~L~~i~lp 374 (394)
T 4fs7_A 350 FPL--SLRKIGANAF---QGCINLKKVELP 374 (394)
T ss_dssp CCT--TCCEECTTTB---TTCTTCCEEEEE
T ss_pred ECc--cccEehHHHh---hCCCCCCEEEEC
Confidence 864 4666765433 246778888774
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=1.6e-07 Score=89.87 Aligned_cols=212 Identities=12% Similarity=0.110 Sum_probs=141.5
Q ss_pred CCeEEeCCCCCCCCCCCcC--CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEE
Q 013440 38 DPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLC 114 (443)
Q Consensus 38 ~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~ 114 (443)
+++.+.+.. .++.+.... +|++|+.+++.+|.. ..++...|. +..|+.+.+..+ ++.++ ..|.+|.+|+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l--~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI--TKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC--SEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc--eEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 577788775 555555333 889999999998874 677777776 689999999854 66654 5578899999999
Q ss_pred ecCCCCCC--cccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccCCccc----cccchHHhhcCCCCcEEEccC
Q 013440 115 LDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWL----EVIAPNVISKLSQLEELYMGN 187 (443)
Q Consensus 115 l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~ 187 (443)
+..+ +.. ...+.+ .+|+.+.+. +.++.++. .+.++++|+.+.+.++... ..++...|..|++|+.+.+..
T Consensus 233 l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 233 IPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred cCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 8764 333 355555 678888884 34665543 5788899999988774322 245655688888999988874
Q ss_pred CCCCcccccCCCchhhhhccCCCCCCEEEeecCCCCCCCCcc--ccccCcEEEEEecCCCCCCCCchhccc-ccceeEEE
Q 013440 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF--VSVELQRYKIRIGDGPEDEFDPLLVKS-EASRLMML 264 (443)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l 264 (443)
+ +..... ..+.++++|+.+.+..+ +..+.... .+ +|+.+.+.....+.... ..+..+ ..++.+.+
T Consensus 310 ~-i~~I~~--------~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~-~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 310 S-IRILGQ--------GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE-KVWYGFPDDITVIRV 377 (401)
T ss_dssp T-CCEECT--------TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC-SSCCCSCTTCCEEEE
T ss_pred c-eEEEhh--------hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc-ccccCCCCCccEEEe
Confidence 3 333332 56778888999988544 55555444 45 88888885443333211 122333 46777777
Q ss_pred cCccc
Q 013440 265 KGIKK 269 (443)
Q Consensus 265 ~~~~~ 269 (443)
..+..
T Consensus 378 p~~~~ 382 (401)
T 4fdw_A 378 PAESV 382 (401)
T ss_dssp CGGGH
T ss_pred CHHHH
Confidence 76443
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.76 E-value=2.6e-09 Score=88.71 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=53.3
Q ss_pred CccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccc-ccccccceeeeccCcCcccccChhhh
Q 013440 312 RLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRED-QSFSNLRIINVDSCRKLKYLFSFSMA 390 (443)
Q Consensus 312 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~ 390 (443)
.|++|++++|. +++. + ...+..+++|+.|++++|..+++.....+.+. ...++|++|++++|+++++.+... +
T Consensus 62 ~L~~LDLs~~~-Itd~---G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L 135 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI---G-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-L 135 (176)
T ss_dssp CEEEEEEESCC-CCGG---G-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-G
T ss_pred eEeEEeCcCCC-ccHH---H-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-H
Confidence 46666666664 3321 1 22345666666777766666666544333211 113467777777777777765433 3
Q ss_pred hcccccceeeeccCccccc
Q 013440 391 KNLLRLQKVKVEDCDDLKM 409 (443)
Q Consensus 391 ~~~~~L~~L~i~~C~~l~~ 409 (443)
..+++|++|+|++|+.+++
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 4567777777777777665
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=2.2e-08 Score=94.22 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=95.7
Q ss_pred hhccCCCCeEEeCCCCCCCC--C-------CCcC-CCCCCcEEEcccCCCC---C----ccCcHHHHhcCCCCCEEEcCC
Q 013440 32 EETIQKDPIAISLPHRDIQE--L-------PERL-QCPNLQLFLLYTEGNG---P----MQVSDHFFEGMEGLKVLQFPG 94 (443)
Q Consensus 32 ~~~~~~~l~~L~l~~~~~~~--l-------~~~~-~~~~L~~L~l~~~~~~---~----~~~~~~~~~~l~~L~~L~l~~ 94 (443)
.......++.|.+.....+. . .... .+++|+.|.+...... . ..-...++..+++|+.|++++
T Consensus 102 ~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g 181 (362)
T 2ra8_A 102 KDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG 181 (362)
T ss_dssp HCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEEC
T ss_pred cCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeC
Confidence 34444556667666544321 0 1111 4677777777543210 0 011234456677777777777
Q ss_pred CccccccccccCCCCCcEEEecCCCCCC--ccccc--CCCCCCEEEcCCC--C------CCCCchhh--cCCCCCCEEec
Q 013440 95 IGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIG--QLKKLEILSLAYS--N------INQLPVEI--GQLTRLQLLDL 160 (443)
Q Consensus 95 ~~~~~~p~~l~~l~~L~~L~l~~~~l~~--~~~~~--~l~~L~~L~l~~~--~------~~~lp~~~--~~l~~L~~L~l 160 (443)
+....++. + .+++|++|++..|.+.. +..+. .+++|+.|+|+.+ . +..+...+ ..+++|+.|++
T Consensus 182 ~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 182 TNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp CBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred CCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 63223333 3 26777777777776654 33332 5777777776421 1 11222222 24677777777
Q ss_pred cCCccccccchHHh--hcCCCCcEEEccCCCCCcccccCCCchhhhhccCCCCCCEEEeecCCC
Q 013440 161 SNCWWLEVIAPNVI--SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (443)
Q Consensus 161 ~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (443)
.+|.+.+..+..++ ..+++|++|+++.|.+..... ......+..+++|+.|+++.|.+
T Consensus 260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~----~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA----RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH----HHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH----HHHHhhcccCCcceEEECCCCcC
Confidence 66655443332222 235667777776665543321 01222334566777777766654
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=8e-08 Score=90.37 Aligned_cols=85 Identities=25% Similarity=0.145 Sum_probs=42.4
Q ss_pred hcCCCCCEEEcCC-Ccccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCE
Q 013440 82 EGMEGLKVLQFPG-IGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157 (443)
Q Consensus 82 ~~l~~L~~L~l~~-~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 157 (443)
..+.+|++|+|++ |.++.++ ..|+.+++|++|++++|.+.. +..++++++|++|+|++|.++.+|..+.....|+.
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~ 107 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceE
Confidence 4455555555553 5554443 334555555555555555544 23445555555555555555555544332222555
Q ss_pred EeccCCccc
Q 013440 158 LDLSNCWWL 166 (443)
Q Consensus 158 L~l~~~~~~ 166 (443)
|++.+|.+.
T Consensus 108 l~l~~N~~~ 116 (347)
T 2ifg_A 108 LVLSGNPLH 116 (347)
T ss_dssp EECCSSCCC
T ss_pred EEeeCCCcc
Confidence 555554433
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.62 E-value=1.1e-07 Score=89.42 Aligned_cols=102 Identities=23% Similarity=0.166 Sum_probs=84.3
Q ss_pred CEEEcCCC-ccccccccccCCCCCcEEEecC-CCCCC-c-ccccCCCCCCEEEcCCCCCCCCch-hhcCCCCCCEEeccC
Q 013440 88 KVLQFPGI-GSSSLPSSLGRLINLQTLCLDW-CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSN 162 (443)
Q Consensus 88 ~~L~l~~~-~~~~~p~~l~~l~~L~~L~l~~-~~l~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~ 162 (443)
..++.+++ .++.+|. +..+.+|++|++++ |.+.. + ..++++++|++|+|++|.++.++. .+.++++|+.|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688887 8889999 99999999999996 88888 3 678999999999999999997655 579999999999999
Q ss_pred CccccccchHHhhcCCCCcEEEccCCCCCc
Q 013440 163 CWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (443)
Q Consensus 163 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (443)
|.+ ..+|...+..+. |+.|++.+|.+.-
T Consensus 90 N~l-~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NAL-ESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCC-SCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred Ccc-ceeCHHHcccCC-ceEEEeeCCCccC
Confidence 654 566665455555 9999999887654
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=2.1e-08 Score=83.16 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=73.1
Q ss_pred cccceeeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCc----cCcccceeccccccccccccc
Q 013440 284 QRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEV----FPLLEALSLMFLTNLETICYS 359 (443)
Q Consensus 284 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~~~~~ 359 (443)
.+|+.|++++|. +.+..... +..|++|++|+|++|.++++.. ...+.. .+.|++|++++|+++++-+..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~g----L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDH--MEGLQYVEKIRLCKCHYIEDGC----LERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGG--GTTCSCCCEEEEESCTTCCHHH----HHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHH--hcCCCCCCEEEeCCCCccCHHH----HHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 368888888887 44332221 3489999999999999887532 122222 368999999999999887654
Q ss_pred cccccccccccceeeeccCcCccccc--Chhhhhcccccc
Q 013440 360 QLREDQSFSNLRIINVDSCRKLKYLF--SFSMAKNLLRLQ 397 (443)
Q Consensus 360 ~~~~~~~~~~L~~L~i~~c~~l~~~~--~~~~~~~~~~L~ 397 (443)
. ...+++|++|++++|+.+++.. ...+-..+|.++
T Consensus 134 ~---L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 134 A---LHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp H---GGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred H---HhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 3 3468999999999999999864 222233556544
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.28 E-value=5.4e-05 Score=72.24 Aligned_cols=297 Identities=9% Similarity=0.070 Sum_probs=151.8
Q ss_pred CCC-CCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCc---ccccc-ccccCCCCCcEEEecCCCCCC--cccccCC
Q 013440 57 QCP-NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG---SSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQL 129 (443)
Q Consensus 57 ~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l 129 (443)
+++ .|+.+.+... ...+....|.+|.+|+.+.+..+. ++.++ ..|.+|.+|+.+.+..+ +.. ...+..+
T Consensus 61 ~~~~~L~sI~iP~s---vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT---VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TCCSCCCEEEECTT---CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred CCCCcCEEEEECCC---eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 453 5888888654 356666678888999998887654 44443 44667788877766543 222 3567788
Q ss_pred CCCCEEEcCCCCCCCCc-hhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhhhhccC
Q 013440 130 KKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER 208 (443)
Q Consensus 130 ~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 208 (443)
.+|+.+.+... +..++ ..+..+.+|+.+.+..+ ...+....+. ..+|+.+.+..+-. .... ..+..
T Consensus 137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~--------~af~~ 203 (394)
T 4gt6_A 137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAKVT-RIGT--------NAFSE 203 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTTCC-EECT--------TTTTT
T ss_pred cccccccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCccc-cccc--------chhhh
Confidence 88888888654 33333 34677888888888652 3334433343 35688777654321 1111 34566
Q ss_pred CCCCCEEEeecCCCCCCCCcccc-ccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccc
Q 013440 209 LTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE 287 (443)
Q Consensus 209 l~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 287 (443)
+.++............+...... .......+... .....+..+.+... ...+. ..++..+ .+|+
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ip~~--v~~i~-~~aF~~c-~~L~ 268 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRY-----------PSQREDPAFKIPNG--VARIE-THAFDSC-AYLA 268 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC-----------CTTCCCSEEECCTT--EEEEC-TTTTTTC-SSCC
T ss_pred ccccceecccccccccccceeeccccccccccccc-----------ccccccceEEcCCc--ceEcc-cceeeec-cccc
Confidence 77777776665444333322211 11111111000 01111222222110 00000 1112222 5555
Q ss_pred eeeccccCCcccc-ccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccccc
Q 013440 288 DLWLETLEGVQSV-VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQS 366 (443)
Q Consensus 288 ~L~L~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 366 (443)
.+.+.... ..+ ...+ ..|++|+.+.+.. .++.+++. .-..+.+|+.+.|.. .++.+....+ ..
T Consensus 269 ~i~lp~~~--~~I~~~aF---~~c~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~aF---~~ 332 (394)
T 4gt6_A 269 SVKMPDSV--VSIGTGAF---MNCPALQDIEFSS--RITELPES----VFAGCISLKSIDIPE--GITQILDDAF---AG 332 (394)
T ss_dssp EEECCTTC--CEECTTTT---TTCTTCCEEECCT--TCCEECTT----TTTTCTTCCEEECCT--TCCEECTTTT---TT
T ss_pred EEeccccc--ceecCccc---ccccccccccCCC--cccccCce----eecCCCCcCEEEeCC--cccEehHhHh---hC
Confidence 55553211 111 1112 2566677766642 34444311 233456677776653 4555554332 23
Q ss_pred ccccceeeeccCcCcccccChhhhhcccccceeeeccC
Q 013440 367 FSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC 404 (443)
Q Consensus 367 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~~L~~L~i~~C 404 (443)
+.+|+++.|- ..++.++..+ ..+|.+|+.+.+.+.
T Consensus 333 C~~L~~i~ip--~sv~~I~~~a-F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 333 CEQLERIAIP--SSVTKIPESA-FSNCTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEEC--TTCCBCCGGG-GTTCTTCCEEEESSC
T ss_pred CCCCCEEEEC--cccCEEhHhH-hhCCCCCCEEEECCc
Confidence 5667777773 3466665433 466777777776543
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=1.1e-06 Score=74.35 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=60.5
Q ss_pred HHhcCCCCCEEEcCCC-cccc-----ccccccCCCCCcEEEecCCCCCC--c----ccccCCCCCCEEEcCCCCCC----
Q 013440 80 FFEGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN---- 143 (443)
Q Consensus 80 ~~~~l~~L~~L~l~~~-~~~~-----~p~~l~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~~~---- 143 (443)
++...+.|++|++++| .+.. +...+...++|++|++++|.+.+ . ..+...++|++|++++|.++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666666776666 5542 34445556666677776666654 1 33344456666666666665
Q ss_pred -CCchhhcCCCCCCEEec--cCCccccccch---HHhhcCCCCcEEEccCCCC
Q 013440 144 -QLPVEIGQLTRLQLLDL--SNCWWLEVIAP---NVISKLSQLEELYMGNGFS 190 (443)
Q Consensus 144 -~lp~~~~~l~~L~~L~l--~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~ 190 (443)
.+...+...++|+.|++ ++|.+-+.... ..+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 23444555566666666 44443332211 1234445666666665554
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.24 E-value=0.00014 Score=69.26 Aligned_cols=143 Identities=12% Similarity=0.129 Sum_probs=77.5
Q ss_pred CeEEeCCCCCCCCCCC--cCCCCCCcEEEcccCC-CCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEE
Q 013440 39 PIAISLPHRDIQELPE--RLQCPNLQLFLLYTEG-NGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLC 114 (443)
Q Consensus 39 l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~ 114 (443)
++.+.+... ++.+.. +.+|.+|+.+.+..+. .....+....|.+|..|+.+.+..+ ++.++ ..+..|.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 555555532 333332 2267777777776542 1134555566677777777666543 33333 3456677777777
Q ss_pred ecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccC
Q 013440 115 LDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (443)
Q Consensus 115 l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 187 (443)
+.... .. -..+..+..|..+.+..+ ++.+........+|+.+.+... ...+....+..+.++.......
T Consensus 144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECC
T ss_pred cccee-eeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceecccc
Confidence 75432 22 255666777777777554 4433333233456777766542 1222222356666666665543
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.24 E-value=1.9e-06 Score=80.96 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=113.7
Q ss_pred hccCCCCeEEeCCCCCCC----------CCCCcC-CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccc-c
Q 013440 33 ETIQKDPIAISLPHRDIQ----------ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-L 100 (443)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~----------~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~ 100 (443)
.+.+++|+.|.+.+...+ .+.... .+|+|+.|.++++.. ..++. + .+++|+.|++..|.+.. .
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~--l~l~~-~--~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN--LSIGK-K--PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT--CBCCS-C--BCTTCSEEEEECSBCCHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC--ceecc-c--cCCCCcEEEEecCCCChHH
Confidence 456789999998764332 122222 789999999998842 23333 2 48999999999888753 2
Q ss_pred ccccc--CCCCCcEEEecCC--C------CCCc-ccc--cCCCCCCEEEcCCCCCCC-Cchhh---cCCCCCCEEeccCC
Q 013440 101 PSSLG--RLINLQTLCLDWC--E------LADI-AAI--GQLKKLEILSLAYSNINQ-LPVEI---GQLTRLQLLDLSNC 163 (443)
Q Consensus 101 p~~l~--~l~~L~~L~l~~~--~------l~~~-~~~--~~l~~L~~L~l~~~~~~~-lp~~~---~~l~~L~~L~l~~~ 163 (443)
...+. .+++|++|+++.+ . +..+ ..+ ..+++|++|++.+|.+.. .+..+ ..+++|++|+++.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 22333 6899999998632 1 1111 122 358999999999998762 22222 36889999999987
Q ss_pred ccccccchHH---hhcCCCCcEEEccCCCCCcccccCCCchhhhhccC-CCCCCEEEeecCC
Q 013440 164 WWLEVIAPNV---ISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPD 221 (443)
Q Consensus 164 ~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 221 (443)
.+.+.....+ +..+++|+.|+++.|.+..... ..+.. + ...++++.+.
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~--------~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK--------KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH--------HHHHHHC--CSEEECCSBC
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH--------HHHHHHc--CCEEEecCCc
Confidence 6555322221 3567899999999998765433 33333 2 3557787665
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=2.3e-06 Score=72.49 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=80.4
Q ss_pred CCCCCcEEEcccC-CCCCccC---cHHHHhcCCCCCEEEcCCCcccc-----ccccccCCCCCcEEEecCCCCCC-----
Q 013440 57 QCPNLQLFLLYTE-GNGPMQV---SDHFFEGMEGLKVLQFPGIGSSS-----LPSSLGRLINLQTLCLDWCELAD----- 122 (443)
Q Consensus 57 ~~~~L~~L~l~~~-~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~-----~p~~l~~l~~L~~L~l~~~~l~~----- 122 (443)
..+.|++|++++| .. .+.- ....+...+.|++|++++|.+.. +...+...++|++|++++|.+.+
T Consensus 34 ~~~~L~~L~L~~n~~i-~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNI-PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTC-CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCCEEEecCCCCC-CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 5778888999888 64 2211 12223567889999999998863 45556677889999999999876
Q ss_pred -cccccCCCCCCEEEc--CCCCCC-----CCchhhcCCCCCCEEeccCCcc
Q 013440 123 -IAAIGQLKKLEILSL--AYSNIN-----QLPVEIGQLTRLQLLDLSNCWW 165 (443)
Q Consensus 123 -~~~~~~l~~L~~L~l--~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~ 165 (443)
...+...++|++|++ ++|.++ .+...+...++|+.|++++|.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 256677788999999 778887 2455667788999999998754
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=2.8e-05 Score=69.35 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=51.7
Q ss_pred cCCCCCcEEEecCCCCCCc----ccccCCCCCCEEEcCCCCCCCCchhhcCCC--CCCEEeccCCccccccc------hH
Q 013440 105 GRLINLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVEIGQLT--RLQLLDLSNCWWLEVIA------PN 172 (443)
Q Consensus 105 ~~l~~L~~L~l~~~~l~~~----~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~~~~------~~ 172 (443)
..+++|++|++++|.+..+ ..++.+++|+.|+|++|.++.+ ..+..++ +|+.|++.+|++.+..| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3567777777777776662 2334677777777777777755 2233333 77888888877665443 23
Q ss_pred HhhcCCCCcEEEc
Q 013440 173 VISKLSQLEELYM 185 (443)
Q Consensus 173 ~l~~l~~L~~L~l 185 (443)
++..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4677888888873
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=6.4e-05 Score=67.04 Aligned_cols=88 Identities=22% Similarity=0.200 Sum_probs=54.1
Q ss_pred cCCCCCCEEEcCCCCCCCCc---hhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccCCCchhh
Q 013440 127 GQLKKLEILSLAYSNINQLP---VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASL 203 (443)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~lp---~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 203 (443)
.++++|+.|+|++|.++.++ ..+..+++|+.|++++|.+.+.-....+..+ +|++|++.+|.+....+.. .....
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~-~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQ-STYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSH-HHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcc-hhHHH
Confidence 45788888888888887543 4566788888888888655443111112333 7888888888775422100 00111
Q ss_pred hhccCCCCCCEEE
Q 013440 204 VELERLTELTTLE 216 (443)
Q Consensus 204 ~~l~~l~~L~~L~ 216 (443)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3466778888765
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.63 E-value=0.0057 Score=57.64 Aligned_cols=298 Identities=12% Similarity=0.069 Sum_probs=126.8
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCC
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~ 133 (443)
...+|+.+.+... ...++...|.+|.+|+.+.+..+ ++.++ ..|.++ +|+.+.+..+ +.. -..+..+ +|+
T Consensus 44 ~~~~i~~v~ip~~---vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 44 DRDRISEVRVNSG---ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGCSEEEECTT---EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cccCCEEEEeCCC---ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 3445666666432 24555555666677777766543 44443 224444 4555544322 222 1333333 566
Q ss_pred EEEcCCCCCCCCchhhcCCCCCCEEeccCCccccccchHHhhcCCCCcEEEccCCCCCcccccC----CCchhhhhccCC
Q 013440 134 ILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG----GSNASLVELERL 209 (443)
Q Consensus 134 ~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~~l~~l 209 (443)
.+.+..+ ++.+........+|....+... ...+....+..+.+++...+............ ........+...
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 6666543 2222222111223444443321 12222222445555655554432211110000 000000112233
Q ss_pred CCCCEEEeecCCCCCCCCcc-ccccCcEEEEEecCCCCCCCCchhcccccceeEEEcCccccccccccchhhHhhcccce
Q 013440 210 TELTTLEIEVPDAEILPPDF-VSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTED 288 (443)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 288 (443)
..+..+.+............ .+..|+.+.+... ........+..+..|+.+.+..+ ...+. ...+.. +.+|+.
T Consensus 194 ~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~-~~aF~~-~~~l~~ 267 (379)
T 4h09_A 194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIG-SFLLQN-CTALKT 267 (379)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEEC-TTTTTT-CTTCCE
T ss_pred ccccccccccceeEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeC-ccccce-eehhcc
Confidence 34444433322211111111 3355555544211 00011122356677777777653 11111 112222 256777
Q ss_pred eeccccCCccccccccccCCCCCCccEEEEecccCceeecccccccccCccCcccceecccccccccccccccccccccc
Q 013440 289 LWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFS 368 (443)
Q Consensus 289 L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 368 (443)
+.+.. .+..+.... ...|++|+.+.+.+. .++.+.+. .-..+.+|+.+.+.. .++.++...+. .+.
T Consensus 268 i~l~~--~i~~i~~~a--F~~c~~L~~i~l~~~-~i~~I~~~----aF~~c~~L~~i~lp~--~l~~I~~~aF~---~C~ 333 (379)
T 4h09_A 268 LNFYA--KVKTVPYLL--CSGCSNLTKVVMDNS-AIETLEPR----VFMDCVKLSSVTLPT--ALKTIQVYAFK---NCK 333 (379)
T ss_dssp EEECC--CCSEECTTT--TTTCTTCCEEEECCT-TCCEECTT----TTTTCTTCCEEECCT--TCCEECTTTTT---TCT
T ss_pred ccccc--cceeccccc--ccccccccccccccc-ccceehhh----hhcCCCCCCEEEcCc--cccEEHHHHhh---CCC
Confidence 76643 222222211 236788888888654 45555311 234557778877753 46666543322 355
Q ss_pred ccceeeeccCcCcccccC
Q 013440 369 NLRIINVDSCRKLKYLFS 386 (443)
Q Consensus 369 ~L~~L~i~~c~~l~~~~~ 386 (443)
+|+++.+- ..++.++.
T Consensus 334 ~L~~i~ip--~~v~~I~~ 349 (379)
T 4h09_A 334 ALSTISYP--KSITLIES 349 (379)
T ss_dssp TCCCCCCC--TTCCEECT
T ss_pred CCCEEEEC--CccCEEch
Confidence 66666663 24555544
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.51 E-value=0.01 Score=55.87 Aligned_cols=78 Identities=12% Similarity=0.166 Sum_probs=38.3
Q ss_pred HhcCCCCCEEEcCCCcccccc-ccccCCCCCcEEEecCCCCCC--cccccCCCCCCEEEcCCCCCCCCchhhcCCCCCCE
Q 013440 81 FEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157 (443)
Q Consensus 81 ~~~l~~L~~L~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 157 (443)
+....+|+.+.+.. .++.++ ..|.+|.+|+.+.+..+ +.. -.++.++ +|..+.+..+ ++.+........+|+.
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSE
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccc
Confidence 34455666666653 344443 33566666776666432 332 2444454 4555544332 3333333223335666
Q ss_pred EeccC
Q 013440 158 LDLSN 162 (443)
Q Consensus 158 L~l~~ 162 (443)
+.+..
T Consensus 118 i~lp~ 122 (379)
T 4h09_A 118 FEFPG 122 (379)
T ss_dssp EECCT
T ss_pred ccCCC
Confidence 66654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.90 E-value=0.015 Score=48.95 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=45.7
Q ss_pred HHhcCCCCCEEEcCCC-cccc-----ccccccCCCCCcEEEecCCCCCC--c----ccccCCCCCCEEEcCCCCCC----
Q 013440 80 FFEGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN---- 143 (443)
Q Consensus 80 ~~~~l~~L~~L~l~~~-~~~~-----~p~~l~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~~~---- 143 (443)
+..+-+.|+.|+++++ .+.. +.+.+..-..|+.|++++|.+.+ . ..+..-..|+.|+|+.|.++
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3344566666776664 4431 33445555566777777766655 1 33334456666666666665
Q ss_pred -CCchhhcCCCCCCEEeccC
Q 013440 144 -QLPVEIGQLTRLQLLDLSN 162 (443)
Q Consensus 144 -~lp~~~~~l~~L~~L~l~~ 162 (443)
.+-..+..-+.|+.|++++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHhhCCceeEEECCC
Confidence 2333344444566666654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.83 E-value=0.012 Score=49.49 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=61.2
Q ss_pred cCCCCCcEEEecCC-CCCC------cccccCCCCCCEEEcCCCCCC-----CCchhhcCCCCCCEEeccCCccccccchH
Q 013440 105 GRLINLQTLCLDWC-ELAD------IAAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIAPN 172 (443)
Q Consensus 105 ~~l~~L~~L~l~~~-~l~~------~~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 172 (443)
..-+.|++|+++++ .+.+ ...+..-..|+.|+|++|.+. .+...+..-+.|+.|+++.|.+-+.....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44567788888775 5654 144555667777777777776 33444455566777777776544433222
Q ss_pred H---hhcCCCCcEEEccCCC---CCcccccCCCchhhhhccCCCCCCEEEeecCC
Q 013440 173 V---ISKLSQLEELYMGNGF---SGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (443)
Q Consensus 173 ~---l~~l~~L~~L~l~~~~---~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (443)
+ +..-+.|++|+++++. +..... ......+..-+.|++|++..+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~----~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVE----MDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHH----HHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHH----HHHHHHHHhCCCcCeEeccCCC
Confidence 1 3333457777766432 221110 0122344555566666665443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.95 E-value=0.11 Score=40.49 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=28.2
Q ss_pred EEeCCCCCCC--CCCCcCCCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCcc
Q 013440 41 AISLPHRDIQ--ELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS 97 (443)
Q Consensus 41 ~L~l~~~~~~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 97 (443)
+++.++.+++ .+|... .++|+.|++++|.+ ..++...|..+++|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNL--TALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCC--SSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcC--CccChhhhhhccccCEEEecCCCe
Confidence 4455555554 444321 22456666666653 455555555555666666555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.79 E-value=0.18 Score=39.19 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=32.1
Q ss_pred EEEecCCCCC--C-cccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCCEEeccCCccc
Q 013440 112 TLCLDWCELA--D-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWL 166 (443)
Q Consensus 112 ~L~l~~~~l~--~-~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~ 166 (443)
.++.++..++ . |..+ -.+|++|+|++|.++.+|.. +..+++|+.|++.+|+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5556666555 3 3221 13577777777777766654 456777777777776543
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=55.52 E-value=3.2 Score=40.88 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHhhcc
Q 013440 1 MHDVIHVVAVSIATEE 16 (443)
Q Consensus 1 mhdli~~~~~~i~~~~ 16 (443)
|||+||++|+++++++
T Consensus 456 mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp CCHHHHHHHHTTSCTH
T ss_pred eChHHHHHHHHHHHHH
Confidence 8999999999998754
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.58 E-value=46 Score=23.91 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=6.2
Q ss_pred HhcCCCCCEEEcC
Q 013440 81 FEGMEGLKVLQFP 93 (443)
Q Consensus 81 ~~~l~~L~~L~l~ 93 (443)
|.+|..|+.+.+.
T Consensus 16 F~~c~~L~~i~iP 28 (100)
T 2lz0_A 16 FAGNTVIREITVQ 28 (100)
T ss_dssp TTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcC
Confidence 4444444444444
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.56 E-value=67 Score=23.03 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=28.3
Q ss_pred CCCCCcEEEcccCCCCCccCcHHHHhcCCCCCEEEcCCCc
Q 013440 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG 96 (443)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 96 (443)
+|..|+.+.+-.+- ..+....|.+|.+|+.+.+.+..
T Consensus 18 ~c~~L~~i~iP~~v---~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 18 GNTVIREITVQPNI---GLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp TCTTCCCEEECTTS---SCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCCCCcEEEcCCch---heEcHHHHhccCCccEEEEcCCC
Confidence 78899999887653 45666667888888888887654
Done!