Query 013441
Match_columns 443
No_of_seqs 292 out of 2321
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:53:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02627 glutamyl-tRNA synthet 100.0 2E-125 4E-130 994.3 44.2 424 3-436 3-426 (535)
2 KOG1149 Glutamyl-tRNA syntheta 100.0 7E-125 1E-129 946.7 31.7 415 3-438 1-423 (524)
3 PRK01406 gltX glutamyl-tRNA sy 100.0 3E-112 7E-117 894.8 42.1 382 53-437 2-384 (476)
4 PRK12558 glutamyl-tRNA synthet 100.0 1E-111 2E-116 879.1 37.1 363 55-436 2-364 (445)
5 PRK12410 glutamylglutaminyl-tR 100.0 8E-111 2E-115 869.6 36.1 353 58-436 2-355 (433)
6 PRK14895 gltX glutamyl-tRNA sy 100.0 1E-108 2E-113 866.3 38.5 370 54-436 3-421 (513)
7 TIGR00464 gltX_bact glutamyl-t 100.0 6E-106 1E-110 846.7 41.5 374 55-436 1-374 (470)
8 COG0008 GlnS Glutamyl- and glu 100.0 8E-102 2E-106 809.8 32.2 368 56-436 10-381 (472)
9 PF00749 tRNA-synt_1c: tRNA sy 100.0 1.3E-97 3E-102 748.3 23.0 310 55-372 1-314 (314)
10 PRK05710 glutamyl-Q tRNA(Asp) 100.0 2.3E-94 5E-99 716.7 30.4 293 53-367 3-298 (299)
11 TIGR03838 queuosine_YadB gluta 100.0 1.3E-91 2.9E-96 689.6 27.0 271 56-350 1-272 (272)
12 cd00418 GlxRS_core catalytic c 100.0 5.5E-80 1.2E-84 593.3 25.2 230 55-380 1-230 (230)
13 TIGR00440 glnS glutaminyl-tRNA 100.0 7E-80 1.5E-84 649.1 25.5 305 56-381 1-339 (522)
14 PLN03233 putative glutamate-tR 100.0 1.5E-77 3.3E-82 630.7 30.9 258 49-338 5-297 (523)
15 PRK05347 glutaminyl-tRNA synth 100.0 6.6E-77 1.4E-81 627.9 30.3 272 37-338 11-321 (554)
16 PTZ00402 glutamyl-tRNA synthet 100.0 9E-77 1.9E-81 630.8 31.3 281 48-382 45-360 (601)
17 cd00808 GluRS_core catalytic c 100.0 6.1E-77 1.3E-81 575.8 26.6 239 55-380 1-239 (239)
18 PLN02859 glutamine-tRNA ligase 100.0 1.2E-76 2.7E-81 642.8 26.4 299 50-374 259-588 (788)
19 PRK04156 gltX glutamyl-tRNA sy 100.0 9.1E-74 2E-78 608.3 31.0 277 49-380 95-408 (567)
20 PLN02907 glutamate-tRNA ligase 100.0 2.6E-73 5.6E-78 622.4 30.7 279 49-382 207-520 (722)
21 TIGR00463 gltX_arch glutamyl-t 100.0 3.4E-73 7.5E-78 603.2 28.8 258 50-338 88-380 (560)
22 PRK14703 glutaminyl-tRNA synth 100.0 7.7E-73 1.7E-77 618.2 29.1 302 37-370 13-357 (771)
23 cd00807 GlnRS_core catalytic c 100.0 3.7E-70 8.1E-75 526.0 23.8 220 55-382 1-236 (238)
24 PTZ00437 glutaminyl-tRNA synth 100.0 4.5E-69 9.9E-74 568.0 26.7 296 50-370 46-370 (574)
25 cd09287 GluRS_non_core catalyt 100.0 6.6E-67 1.4E-71 504.8 22.9 220 55-382 1-238 (240)
26 KOG1147 Glutamyl-tRNA syntheta 100.0 9.5E-44 2.1E-48 365.9 20.3 276 50-380 195-505 (712)
27 KOG1148 Glutaminyl-tRNA synthe 100.0 1.9E-43 4.1E-48 366.6 12.8 300 50-371 243-569 (764)
28 cd00671 ArgRS_core catalytic c 99.9 2.7E-24 5.9E-29 205.2 13.7 180 61-309 8-212 (212)
29 PRK00260 cysS cysteinyl-tRNA s 99.9 1.4E-21 3E-26 206.7 21.1 228 54-333 22-296 (463)
30 TIGR00435 cysS cysteinyl-tRNA 99.9 1.3E-20 2.9E-25 199.3 20.5 236 60-349 27-308 (465)
31 PRK01611 argS arginyl-tRNA syn 99.9 3.3E-21 7.2E-26 205.9 15.3 246 53-375 110-387 (507)
32 COG0215 CysS Cysteinyl-tRNA sy 99.8 1.2E-20 2.6E-25 196.1 13.9 231 61-338 29-303 (464)
33 PRK14534 cysS cysteinyl-tRNA s 99.8 4.6E-19 9.9E-24 187.1 19.9 239 61-350 28-324 (481)
34 PRK12418 cysteinyl-tRNA synthe 99.8 2.5E-19 5.5E-24 184.7 17.6 245 61-349 16-305 (384)
35 PRK14536 cysS cysteinyl-tRNA s 99.8 4.5E-19 9.8E-24 187.7 20.0 237 61-351 30-325 (490)
36 PF01406 tRNA-synt_1e: tRNA sy 99.8 9.3E-20 2E-24 181.2 13.6 232 61-337 15-286 (300)
37 PLN02946 cysteine-tRNA ligase 99.8 4.4E-19 9.5E-24 189.9 15.6 225 61-336 87-356 (557)
38 TIGR03447 mycothiol_MshC cyste 99.8 9.2E-19 2E-23 181.6 16.4 230 61-333 43-319 (411)
39 PRK14535 cysS cysteinyl-tRNA s 99.8 1.5E-17 3.2E-22 180.0 19.8 224 61-335 255-540 (699)
40 PTZ00399 cysteinyl-tRNA-synthe 99.7 1.3E-15 2.8E-20 167.0 18.3 241 61-349 67-358 (651)
41 cd00802 class_I_aaRS_core cata 99.7 2.1E-16 4.5E-21 141.5 8.6 62 247-308 78-143 (143)
42 COG0143 MetG Methionyl-tRNA sy 99.6 3.2E-15 7E-20 160.4 10.9 263 60-352 12-380 (558)
43 cd00806 TrpRS_core catalytic c 99.6 5E-14 1.1E-18 140.3 16.0 192 63-333 7-217 (280)
44 PRK11893 methionyl-tRNA synthe 99.6 3.5E-14 7.6E-19 151.5 15.3 258 61-351 9-345 (511)
45 cd00668 Ile_Leu_Val_MetRS_core 99.5 3.2E-13 6.8E-18 136.0 18.6 235 61-334 8-304 (312)
46 KOG2007 Cysteinyl-tRNA synthet 99.5 4E-14 8.7E-19 146.9 12.2 232 61-338 62-340 (586)
47 PRK00750 lysK lysyl-tRNA synth 99.5 6.8E-13 1.5E-17 142.2 21.2 236 55-332 24-309 (510)
48 PRK00133 metG methionyl-tRNA s 99.5 3.8E-13 8.3E-18 148.6 16.3 268 62-350 11-375 (673)
49 PLN02610 probable methionyl-tR 99.5 2.1E-13 4.5E-18 152.7 13.9 273 61-354 25-398 (801)
50 cd00814 MetRS_core catalytic c 99.5 1.3E-12 2.8E-17 132.1 17.9 247 61-334 8-311 (319)
51 cd00674 LysRS_core_class_I cat 99.5 1.8E-12 3.9E-17 132.8 18.3 243 54-334 19-306 (353)
52 TIGR00456 argS arginyl-tRNA sy 99.4 1.2E-12 2.6E-17 142.1 16.0 138 234-375 298-443 (566)
53 PLN02286 arginine-tRNA ligase 99.4 1.8E-12 3.9E-17 140.9 17.3 136 234-375 297-455 (576)
54 TIGR00398 metG methionyl-tRNA 99.4 1.8E-12 4E-17 139.3 17.1 95 57-158 3-115 (530)
55 PRK12451 arginyl-tRNA syntheta 99.4 1.4E-12 3E-17 141.4 16.0 137 234-376 294-445 (562)
56 COG0018 ArgS Arginyl-tRNA synt 99.4 7.6E-13 1.6E-17 143.1 13.2 137 232-375 303-453 (577)
57 PLN02224 methionine-tRNA ligas 99.4 3.3E-12 7.2E-17 139.4 17.9 256 56-350 72-411 (616)
58 PRK12267 methionyl-tRNA synthe 99.4 2.6E-12 5.6E-17 141.5 15.8 252 62-351 13-345 (648)
59 PRK12268 methionyl-tRNA synthe 99.3 1.4E-11 2.9E-16 133.4 15.5 89 61-158 11-120 (556)
60 cd00818 IleRS_core catalytic c 99.3 1.5E-11 3.1E-16 125.6 13.7 91 61-158 9-136 (338)
61 cd00817 ValRS_core catalytic c 99.3 3.5E-11 7.6E-16 124.7 15.2 91 61-158 9-135 (382)
62 cd00672 CysRS_core catalytic c 99.3 3.2E-11 7E-16 115.7 13.5 83 247-335 113-206 (213)
63 PF09334 tRNA-synt_1g: tRNA sy 99.3 1.2E-12 2.5E-17 136.2 3.8 270 62-355 8-377 (391)
64 COG0180 TrpS Tryptophanyl-tRNA 99.2 1.4E-10 3.1E-15 116.6 14.5 232 61-379 11-267 (314)
65 PF00750 tRNA-synt_1d: tRNA sy 99.2 3.6E-11 7.7E-16 123.6 10.3 86 233-319 207-305 (354)
66 cd00812 LeuRS_core catalytic c 99.2 1.1E-10 2.3E-15 118.1 12.9 89 61-158 8-118 (314)
67 PRK12556 tryptophanyl-tRNA syn 99.2 3E-10 6.5E-15 115.8 14.7 240 63-385 11-273 (332)
68 PF01921 tRNA-synt_1f: tRNA sy 99.1 8.2E-11 1.8E-15 120.2 6.3 237 53-332 22-311 (360)
69 TIGR00233 trpS tryptophanyl-tR 99.1 1.1E-09 2.3E-14 111.7 13.9 191 62-333 9-218 (328)
70 PRK12285 tryptophanyl-tRNA syn 99.1 1.6E-09 3.5E-14 111.8 14.1 198 55-332 66-276 (368)
71 TIGR00467 lysS_arch lysyl-tRNA 99.1 7.8E-09 1.7E-13 111.0 19.6 236 54-331 18-302 (515)
72 PRK12284 tryptophanyl-tRNA syn 99.0 1.2E-08 2.5E-13 106.8 15.3 222 61-353 8-252 (431)
73 TIGR00422 valS valyl-tRNA synt 98.9 3.8E-08 8.3E-13 111.9 19.9 94 56-158 35-167 (861)
74 PRK12282 tryptophanyl-tRNA syn 98.9 5E-08 1.1E-12 99.7 15.8 229 63-379 10-264 (333)
75 PRK13208 valS valyl-tRNA synth 98.9 6.8E-08 1.5E-12 109.1 18.2 95 55-158 39-169 (800)
76 PRK08560 tyrosyl-tRNA syntheta 98.9 1.4E-07 3.1E-12 96.2 18.4 220 55-354 30-260 (329)
77 cd00805 TyrRS_core catalytic c 98.8 1E-07 2.2E-12 94.7 15.2 226 63-380 8-252 (269)
78 cd00395 Tyr_Trp_RS_core cataly 98.8 2.2E-07 4.9E-12 92.5 17.6 228 63-381 7-257 (273)
79 PRK12283 tryptophanyl-tRNA syn 98.8 8.3E-08 1.8E-12 99.6 14.9 91 63-169 10-107 (398)
80 PRK00927 tryptophanyl-tRNA syn 98.6 7.4E-07 1.6E-11 91.1 14.2 192 63-333 9-221 (333)
81 PTZ00126 tyrosyl-tRNA syntheta 98.5 1.1E-05 2.4E-10 84.0 20.0 203 54-332 65-282 (383)
82 PLN02886 aminoacyl-tRNA ligase 98.4 1.3E-06 2.9E-11 90.7 10.5 117 37-169 25-150 (389)
83 COG1384 LysS Lysyl-tRNA synthe 98.4 5.2E-06 1.1E-10 88.0 14.0 73 54-126 19-96 (521)
84 KOG0436 Methionyl-tRNA synthet 98.3 6.1E-06 1.3E-10 85.3 11.9 89 63-158 49-155 (578)
85 PRK05912 tyrosyl-tRNA syntheta 98.3 2.3E-05 5.1E-10 82.3 16.5 115 259-393 188-303 (408)
86 PLN02486 aminoacyl-tRNA ligase 98.3 9E-05 1.9E-09 77.2 19.9 79 55-140 73-159 (383)
87 PRK13354 tyrosyl-tRNA syntheta 98.2 5.5E-05 1.2E-09 79.6 18.3 102 259-380 186-288 (410)
88 PF00579 tRNA-synt_1b: tRNA sy 98.2 4.1E-06 8.9E-11 83.8 7.5 198 61-333 11-224 (292)
89 PTZ00348 tyrosyl-tRNA syntheta 98.0 0.0005 1.1E-08 76.4 19.9 76 55-138 32-117 (682)
90 TIGR00392 ileS isoleucyl-tRNA 98.0 6.9E-05 1.5E-09 85.6 12.9 130 56-211 39-212 (861)
91 PRK00390 leuS leucyl-tRNA synt 97.9 3.2E-05 7E-10 87.7 8.2 95 55-158 34-150 (805)
92 PRK06039 ileS isoleucyl-tRNA s 97.8 0.00018 3.9E-09 83.3 13.4 164 57-247 45-256 (975)
93 PLN02943 aminoacyl-tRNA ligase 97.8 0.0001 2.3E-09 85.1 10.8 127 58-210 93-258 (958)
94 PRK05743 ileS isoleucyl-tRNA s 97.8 7.7E-05 1.7E-09 85.8 9.7 93 57-158 53-180 (912)
95 PRK05729 valS valyl-tRNA synth 97.8 7.9E-05 1.7E-09 85.3 9.7 129 56-210 38-206 (874)
96 PRK14900 valS valyl-tRNA synth 97.8 7.7E-05 1.7E-09 86.9 9.7 129 56-210 51-220 (1052)
97 TIGR00396 leuS_bact leucyl-tRN 97.8 6.3E-05 1.4E-09 85.8 8.6 94 56-158 32-147 (842)
98 PTZ00419 valyl-tRNA synthetase 97.7 0.00014 3E-09 84.5 9.7 93 57-158 64-195 (995)
99 PLN02563 aminoacyl-tRNA ligase 97.6 0.00019 4.1E-09 82.8 8.7 94 56-158 113-229 (963)
100 PLN02843 isoleucyl-tRNA synthe 97.6 0.00021 4.5E-09 82.7 9.1 91 59-158 38-164 (974)
101 PTZ00427 isoleucine-tRNA ligas 97.5 0.00025 5.4E-09 83.4 9.3 92 58-158 107-237 (1205)
102 KOG2713 Mitochondrial tryptoph 97.5 0.00015 3.3E-09 71.9 5.3 98 57-169 15-121 (347)
103 PLN02882 aminoacyl-tRNA ligase 97.4 0.00058 1.3E-08 80.3 10.2 91 59-158 44-173 (1159)
104 PRK13804 ileS isoleucyl-tRNA s 97.4 0.00071 1.5E-08 78.3 10.0 94 56-158 57-188 (961)
105 COG0525 ValS Valyl-tRNA synthe 97.3 0.0015 3.2E-08 74.0 11.2 127 61-212 41-205 (877)
106 COG0495 LeuS Leucyl-tRNA synth 97.3 0.00037 8E-09 78.6 6.1 95 55-158 36-152 (814)
107 PF00133 tRNA-synt_1: tRNA syn 97.1 0.00099 2.1E-08 73.4 7.8 89 61-158 31-158 (601)
108 PLN02381 valyl-tRNA synthetase 97.1 0.0013 2.8E-08 76.9 9.1 95 56-159 131-264 (1066)
109 TIGR00234 tyrS tyrosyl-tRNA sy 96.9 0.0047 1E-07 64.4 9.4 53 258-310 176-228 (377)
110 TIGR00395 leuS_arch leucyl-tRN 96.7 0.0028 6.1E-08 73.3 6.9 46 287-334 604-651 (938)
111 PLN02959 aminoacyl-tRNA ligase 96.3 0.016 3.5E-07 68.1 9.8 42 290-333 706-748 (1084)
112 KOG0435 Leucyl-tRNA synthetase 96.0 0.0078 1.7E-07 66.0 4.7 94 54-158 58-175 (876)
113 TIGR00395 leuS_arch leucyl-tRN 95.6 0.05 1.1E-06 63.2 9.5 89 61-158 33-167 (938)
114 COG0162 TyrS Tyrosyl-tRNA synt 95.5 0.043 9.3E-07 57.7 8.1 47 264-310 185-231 (401)
115 TIGR00392 ileS isoleucyl-tRNA 95.4 0.053 1.1E-06 62.3 8.9 73 259-333 564-641 (861)
116 PRK06039 ileS isoleucyl-tRNA s 95.2 0.069 1.5E-06 62.3 9.3 87 258-348 544-635 (975)
117 PRK12300 leuS leucyl-tRNA synt 95.0 0.082 1.8E-06 61.1 9.1 74 259-334 530-608 (897)
118 KOG1247 Methionyl-tRNA synthet 95.0 0.021 4.6E-07 59.6 3.8 94 56-156 17-129 (567)
119 KOG0432 Valyl-tRNA synthetase 94.7 0.073 1.6E-06 60.2 7.2 90 61-158 83-210 (995)
120 PF00133 tRNA-synt_1: tRNA syn 94.7 0.072 1.6E-06 58.9 7.2 76 258-334 513-592 (601)
121 PRK05743 ileS isoleucyl-tRNA s 94.3 0.19 4.2E-06 58.2 9.7 72 259-332 545-621 (912)
122 PLN02843 isoleucyl-tRNA synthe 94.1 0.16 3.4E-06 59.4 8.6 70 263-333 568-650 (974)
123 PLN02882 aminoacyl-tRNA ligase 93.8 0.13 2.9E-06 60.9 7.2 73 260-334 568-645 (1159)
124 PRK05729 valS valyl-tRNA synth 93.6 0.24 5.2E-06 57.2 8.8 83 263-349 477-564 (874)
125 PRK13804 ileS isoleucyl-tRNA s 93.1 0.36 7.8E-06 56.4 9.2 72 260-333 584-660 (961)
126 PLN02943 aminoacyl-tRNA ligase 92.9 0.28 6E-06 57.2 7.8 56 290-349 570-626 (958)
127 COG0060 IleS Isoleucyl-tRNA sy 92.7 0.31 6.6E-06 56.3 7.6 126 59-211 55-220 (933)
128 PRK12300 leuS leucyl-tRNA synt 92.2 0.23 4.9E-06 57.6 6.0 82 68-158 1-128 (897)
129 PRK14900 valS valyl-tRNA synth 91.6 0.48 1E-05 55.9 7.8 44 290-334 525-569 (1052)
130 COG0525 ValS Valyl-tRNA synthe 91.5 0.41 8.8E-06 54.8 6.8 76 259-335 478-557 (877)
131 cd02156 nt_trans nucleotidyl t 90.3 0.84 1.8E-05 38.5 6.2 60 58-122 2-67 (105)
132 PLN02959 aminoacyl-tRNA ligase 90.2 0.53 1.1E-05 55.7 6.5 45 54-98 45-92 (1084)
133 PTZ00427 isoleucine-tRNA ligas 89.9 0.98 2.1E-05 53.9 8.3 75 259-334 673-751 (1205)
134 PLN02381 valyl-tRNA synthetase 89.1 0.99 2.2E-05 53.3 7.6 77 258-334 607-723 (1066)
135 PTZ00419 valyl-tRNA synthetase 88.5 1 2.2E-05 52.8 7.2 49 286-334 566-653 (995)
136 TIGR00396 leuS_bact leucyl-tRN 86.5 0.7 1.5E-05 53.3 4.2 77 257-334 518-635 (842)
137 COG0495 LeuS Leucyl-tRNA synth 85.3 1.1 2.3E-05 51.3 4.9 75 256-334 523-610 (814)
138 PRK00390 leuS leucyl-tRNA synt 82.8 1.8 3.8E-05 49.8 5.3 69 258-334 522-601 (805)
139 PLN02563 aminoacyl-tRNA ligase 82.3 1.5 3.2E-05 51.3 4.4 31 303-334 723-754 (963)
140 COG0060 IleS Isoleucyl-tRNA sy 80.3 0.58 1.3E-05 54.1 0.3 47 286-333 583-632 (933)
141 KOG4426 Arginyl-tRNA synthetas 70.9 22 0.00048 38.1 8.8 46 51-97 185-234 (656)
142 KOG0433 Isoleucyl-tRNA synthet 69.3 22 0.00049 40.4 8.8 89 63-160 65-189 (937)
143 TIGR00440 glnS glutaminyl-tRNA 64.2 22 0.00047 39.0 7.5 221 138-380 47-311 (522)
144 KOG0432 Valyl-tRNA synthetase 55.0 12 0.00025 43.2 3.6 40 272-311 560-601 (995)
145 KOG0433 Isoleucyl-tRNA synthet 53.5 27 0.00058 39.8 5.9 124 264-392 571-718 (937)
146 KOG0434 Isoleucyl-tRNA synthet 53.3 3.4 7.4E-05 46.3 -0.9 40 292-331 590-629 (1070)
147 KOG0437 Leucyl-tRNA synthetase 49.3 27 0.00058 39.9 5.1 69 53-124 43-118 (1080)
148 TIGR01527 arch_NMN_Atrans nico 48.8 50 0.0011 30.6 6.2 132 56-212 4-145 (165)
149 cd06350 PBP1_GPCR_family_C_lik 40.8 3.3E+02 0.0073 26.8 11.3 107 55-178 135-242 (348)
150 PF08892 YqcI_YcgG: YqcI/YcgG 36.5 1.5E+02 0.0033 28.7 7.7 72 53-124 28-106 (219)
151 KOG2144 Tyrosyl-tRNA synthetas 35.8 2.9E+02 0.0063 28.4 9.6 47 281-331 199-246 (360)
152 KOG3349 Predicted glycosyltran 34.9 32 0.00069 32.0 2.5 20 144-163 117-136 (170)
153 KOG1195 Arginyl-tRNA synthetas 31.5 1.1E+02 0.0023 33.7 6.1 92 233-332 293-395 (567)
154 cd06269 PBP1_glutamate_recepto 27.7 5E+02 0.011 24.2 11.1 106 53-178 113-220 (298)
155 PF06971 Put_DNA-bind_N: Putat 27.3 83 0.0018 23.5 3.2 30 137-169 8-37 (50)
156 cd02168 NMNAT_Nudix Nicotinami 26.9 2E+02 0.0044 26.9 6.6 34 56-98 4-37 (181)
157 cd06352 PBP1_NPR_GC_like Ligan 26.4 6.8E+02 0.015 25.2 11.2 99 54-169 111-210 (389)
158 COG2969 SspB Stringent starvat 24.1 40 0.00087 30.7 1.2 21 52-72 46-66 (155)
159 COG4720 Predicted membrane pro 23.8 42 0.0009 31.7 1.3 26 62-87 31-56 (177)
160 KOG2623 Tyrosyl-tRNA synthetas 23.4 7.1E+02 0.015 26.8 10.2 103 259-381 227-332 (467)
161 cd06385 PBP1_NPR_A Ligand-bind 23.0 4.8E+02 0.01 26.7 9.2 106 55-177 118-226 (405)
162 KOG0437 Leucyl-tRNA synthetase 21.7 27 0.00058 39.9 -0.4 72 260-334 664-741 (1080)
163 cd00498 Hsp33 Heat shock prote 21.0 1.6E+02 0.0036 29.3 5.1 35 151-201 224-258 (275)
164 COG1056 NadR Nicotinamide mono 21.0 2.9E+02 0.0063 26.0 6.3 58 54-120 6-69 (172)
165 PF13331 DUF4093: Domain of un 20.3 1.6E+02 0.0035 24.4 4.1 33 320-352 6-39 (87)
No 1
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=2e-125 Score=994.29 Aligned_cols=424 Identities=80% Similarity=1.300 Sum_probs=401.6
Q ss_pred cccccCCcceeeeccccccCCCeeeccccccccccceeeeecccccCCCCCCceEEEeCCCCCCcCChhhHHHHHHHHHH
Q 013441 3 SIVAATPWSRIRTITKLELAPPIFLQSSVYYCKRRRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLF 82 (443)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~ 82 (443)
++++||| +|++|+ ++++.++-+.+ .++.|+.....+.. ...++|||||||||||+|||||+||||+||++
T Consensus 3 ~~~~~~~---~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~ 72 (535)
T PLN02627 3 SLVGGTP---IRLLPE--LAPPFLRRSRS---SRRRFSVRAAAAGE--SKGGPVRVRFAPSPTGNLHVGGARTALFNYLF 72 (535)
T ss_pred hhhcCCc---ceeecc--ccccccccccc---cccceeeeeccccc--CCCCceEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 5789998 899998 78877776655 26788887775442 23678999999999999999999999999999
Q ss_pred HHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCC
Q 013441 83 ARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCS 162 (443)
Q Consensus 83 Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs 162 (443)
||++||+|||||||||++|++++++++|+++|+||||+|||||++||+||||+||+|+++|+++|++|+++|+||+||||
T Consensus 73 Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs 152 (535)
T PLN02627 73 ARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCT 152 (535)
T ss_pred HHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecC
Q 013441 163 NEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSN 242 (443)
Q Consensus 163 ~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsD 242 (443)
+++|+++|+.+...+.++.|+|+||+++.+|.++++.+|.+++||||+|.++.+.|+|+++|++++++.+++||||+|+|
T Consensus 153 ~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~D 232 (535)
T PLN02627 153 DEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSN 232 (535)
T ss_pred hHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEecC
Confidence 99999999988888889999999999999999998899999999999998889999999999999999999999999999
Q ss_pred CccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCCCChHHHHHCCCC
Q 013441 243 GQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYL 322 (443)
Q Consensus 243 G~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~~si~~~r~~G~~ 322 (443)
|+||||||||||||+|+|||||||+||++|||+|++||+||||++|.|+|+|+|++++|+|||||+|+++|.+||++||+
T Consensus 233 G~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~~~v~~~r~~G~~ 312 (535)
T PLN02627 233 GQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDRSKLSKRHGATSVGQFREMGYL 312 (535)
T ss_pred CCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCCCccccccCCccHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhcCChhHHHHHHHHHHHHcCCCCC
Q 013441 323 PQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTE 402 (443)
Q Consensus 323 peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 402 (443)
|+||+|||++|||++++++|+++++||++.|+++++++++++||.+||.|||++||++++.+++.+++.|++.+.|+...
T Consensus 313 PeAi~nyla~LGws~~~~~e~~~~~eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~el~~~~~p~l~~~~~~~~ 392 (535)
T PLN02627 313 PDAMVNYLALLGWNDGTENEIFTLEELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEEELVKLVGERWKSAGILKE 392 (535)
T ss_pred HHHHHHHHHHhCCCCCCCCCcCCHHHHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999887789999999999999999999999999999999999999999999999999999999887543
Q ss_pred CCchHHHHHHHHHhhccccccchhhhccccccCc
Q 013441 403 SKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYP 436 (443)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 436 (443)
.+.+|+.+++.++|+|+++|.|+++.++|||.++
T Consensus 393 ~~~~~l~~~~~l~~~ri~~L~d~~~~~~~~f~~~ 426 (535)
T PLN02627 393 SDGSFVKEAVELLKDGIELVTDADKELLNLLSYP 426 (535)
T ss_pred ccHHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCC
Confidence 3457899999999999999999999999999854
No 2
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-125 Score=946.65 Aligned_cols=415 Identities=53% Similarity=0.902 Sum_probs=381.3
Q ss_pred cccccCCcceeeeccccccCCCeeeccccccccccceeeeecccccCCCCCCceEEEeCCCCCCcCChhhHHHHHHHHHH
Q 013441 3 SIVAATPWSRIRTITKLELAPPIFLQSSVYYCKRRRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLF 82 (443)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~ 82 (443)
+|..||||.++|+.|.+.- ..+. . +.|+.|. ..|||||||||||+||||++|||||||||
T Consensus 1 mL~~~t~~~~~~s~~i~~k-~~l~---~---~~r~~~~-------------~~VRvRFAPSPTGfLHlGgLRTALfNYLf 60 (524)
T KOG1149|consen 1 MLVYGTPWLRVRSLPILRK-SSLF---Y---CLRRNFA-------------ACVRVRFAPSPTGFLHLGGLRTALFNYLF 60 (524)
T ss_pred Ccccccchhhccchhhhhh-HhHH---H---HhcCCcc-------------ceeEEeecCCCCcceehhhHHHHHHHHHH
Confidence 4778999999999998411 1111 2 2344443 24999999999999999999999999999
Q ss_pred HHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCC
Q 013441 83 ARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCS 162 (443)
Q Consensus 83 Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs 162 (443)
||++||+|||||||||++|.+++++++|.++|+|+||+|||||.+||+||||.||+|.++|+++|++|++.|+||+||||
T Consensus 61 Ark~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs 140 (524)
T KOG1149|consen 61 ARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCS 140 (524)
T ss_pred HHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceeeeecccceeeecCCC-CCCeEEEec
Q 013441 163 NEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDT-LGDFVIMRS 241 (443)
Q Consensus 163 ~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~-~~D~VL~Rs 241 (443)
+++++.+|+.+......|+||++|+++|.+|+++++++|.|++||||+|+ ....|+|+|+|++.++.++ .+||||+||
T Consensus 141 ~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~~lakg~pf~iRFrl~~-~~~~f~DLvyG~v~~~~d~~~gD~VvmKS 219 (524)
T KOG1149|consen 141 EERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQKLAKGTPFTIRFRLPK-ESPPFTDLVYGKVNHNVDSNEGDPVVMKS 219 (524)
T ss_pred HHHHHHHHHhhhccCCCCcccchhcccCHHHHHHHHhcCCCeeEEEecCC-CCCChhhhhhhhhhccccccCCCcEEEec
Confidence 99999999999888899999999999999999999999999999999997 4788999999999998875 899999999
Q ss_pred CCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCCCChHHHHHCCC
Q 013441 242 NGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGY 321 (443)
Q Consensus 242 DG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~~si~~~r~~G~ 321 (443)
||+||||||||||||+|+|||||||+||++||++|++||+||||++|.|+|+|||+++||+|||||+|+++|.+|+++||
T Consensus 220 DgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAfgW~pPkFaHlpLl~n~d~sKLSKRqgD~~vs~~~e~G~ 299 (524)
T KOG1149|consen 220 DGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAFGWQPPKFAHLPLLLNPDGSKLSKRQGDASVSHYREQGY 299 (524)
T ss_pred CCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHhCCCCCceeeeeeeecCCcchhhhhcCcchHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhcCChh-----HHHHHHHHHHHH
Q 013441 322 LPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSN-----ELTKLIGERWKS 396 (443)
Q Consensus 322 ~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~~~~~-----~l~~~~~~~~~~ 396 (443)
+|||++||++++||++..+.+.+|++|||+.|++++++++++++|.+||.|||++|++.+..+ ++++.+.+.+++
T Consensus 300 LPeallN~ial~Gwg~~~~~~f~sl~eLieqF~i~~ltk~~a~ld~ekL~~~Nr~~lqr~~~n~s~l~~lv~~~q~~l~e 379 (524)
T KOG1149|consen 300 LPEALLNYIALLGWGFRTENEFFSLEELIEQFSIERLTKSNAILDSEKLRFLNRLHLQRLISNESKLRELVDKLQPLLKE 379 (524)
T ss_pred ChHHHHHHHHHcCCCcccccccccHHHHHHHhchhhhcccccccCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876544 466777777776
Q ss_pred cCCCC--CCCchHHHHHHHHHhhccccccchhhhccccccCcch
Q 013441 397 TGILT--ESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLR 438 (443)
Q Consensus 397 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 438 (443)
+---+ ..+..+++.++.++++++.+|.|+...+.|||..|..
T Consensus 380 ~y~~s~~~~~~~~~k~iL~l~~~~~~~l~dl~s~~~~~f~~P~d 423 (524)
T KOG1149|consen 380 AYGTSSDNEAKEVLKDILLLVTGSLKRLQDLLSELSFFFTRPSD 423 (524)
T ss_pred hcCCchhhhhHHHHHHHHHHhccchhHHHHhhhhhheeeeccch
Confidence 52111 1235678889999999999999999999999998854
No 3
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.3e-112 Score=894.75 Aligned_cols=382 Identities=53% Similarity=0.940 Sum_probs=367.2
Q ss_pred CCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 013441 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (443)
Q Consensus 53 ~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~g 132 (443)
.++|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|+++|+||||+|||||.+| +||
T Consensus 2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~-~~g 80 (476)
T PRK01406 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGG-PYG 80 (476)
T ss_pred CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccC-CCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 013441 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (443)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~ 212 (443)
||+||+|+++|+++|++|+++|+||+||||+|||++.|+.+.+.|.+|.|+|+||+++.+|+++.+.+|.+++||||+|.
T Consensus 81 py~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~ 160 (476)
T PRK01406 81 PYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPD 160 (476)
T ss_pred ceehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCC
Confidence 99999999999999999999999999999999999999988888899999999999999999999999999999999998
Q ss_pred CCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 013441 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAH 292 (443)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~H 292 (443)
++.+.|+|+++|++++++..++|+||+|+||+||||||+|||||+|+|||||||+||++|||+|+++|++|||+.|.|+|
T Consensus 161 ~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG~~~p~~~H 240 (476)
T PRK01406 161 EGEVVFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFAH 240 (476)
T ss_pred CCceEEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhCCCCCeEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHH
Q 013441 293 VSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRW 372 (443)
Q Consensus 293 lplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~ 372 (443)
+|+|++.+|+|||||+|.++|++|+++||.|+|+.||+++|||+++ .+|+++++++++.|+++++++++++||++||.|
T Consensus 241 ~pli~~~~g~klSKR~g~~~l~~l~~~G~~p~Ai~n~l~~lG~s~~-~~e~~~~~~~i~~f~l~~~~~s~~~fd~~kL~~ 319 (476)
T PRK01406 241 LPLILGPDGKKLSKRHGATSVEQYRDMGYLPEALLNYLALLGWSHG-DQEIFSLEELIELFDLERVSKSPARFDIKKLDW 319 (476)
T ss_pred eeeeeCCCCCcccCcCCccCHHHHHHCCCCHHHHHHHHHHhCCCCC-ccccCCHHHHHHhcChhhCCCCCccccHHHHHH
Confidence 9999999999999999999999999999999999999999999965 678999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHH-HHHHcCCCCCCCchHHHHHHHHHhhccccccchhhhccccccCcc
Q 013441 373 MNGQHLRAIPSNELTKLIGE-RWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPL 437 (443)
Q Consensus 373 ~n~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 437 (443)
+|++||++++.+++++++.+ ++.+.+.. ..+.+++.+++.++|+|+++++|+.+.++|||..|.
T Consensus 320 ~N~~~i~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~d~~~~~~~ff~~~~ 384 (476)
T PRK01406 320 LNGHYIRELDPEELAELLLPWHLEQEGLD-TEDGPYLEKVVPLLKERAKTLKELAELARFFFEDFP 384 (476)
T ss_pred HHHHHHHhCCHHHHHHHHhHHHhhhcccc-cccHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 99999999999999999999 77766653 234578999999999999999999999999998664
No 4
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-111 Score=879.10 Aligned_cols=363 Identities=37% Similarity=0.616 Sum_probs=346.7
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
+|||||||||||+|||||+|||||||++||++||+|||||||||++|+++++++.|+++|+||||+||+ +|
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De---------~y 72 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDR---------TF 72 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCc---------cc
Confidence 699999999999999999999999999999999999999999999999999999999999999999998 48
Q ss_pred eccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 013441 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (443)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 214 (443)
+||+|.++|++++++|+++|+||+||||++||+++|+.+...+.+|.|+|+|++++.+|.++....|.+++|||+++ ++
T Consensus 73 ~QSer~~~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~-~~ 151 (445)
T PRK12558 73 RQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLD-DE 151 (445)
T ss_pred cHHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecC-CC
Confidence 99999999999999999999999999999999999998888888899999999999999998888999999999995 57
Q ss_pred ceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEee
Q 013441 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (443)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlp 294 (443)
.+.|+|+++|++++++..++||||+|+||+||||||||||||+|+|||||||+||++|||+|++||+||||++|.|+|+|
T Consensus 152 ~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P~f~H~p 231 (445)
T PRK12558 152 PISWDDLIRGEQSIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAHLS 231 (445)
T ss_pred ceEEEEEeeeEeecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCCeEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHH
Q 013441 295 LILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMN 374 (443)
Q Consensus 295 lil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n 374 (443)
+|++++|+|||||+|+++|.+||++||+||||+|||++|||++++ +|++|++||++.|++++++++|++||.+||.|||
T Consensus 232 li~~~~g~KLSKR~g~~sv~~~r~~G~~Peai~n~la~lG~s~~~-~e~~~~~eli~~F~l~~~~~~~~~fd~~KL~w~N 310 (445)
T PRK12558 232 LLTGADGKGLSKRLGGLSIRSLREDGIEPMAIASLLARLGTSDPV-EPYTSMEELAESFDLSSFSRAPAKFDPEDLERLN 310 (445)
T ss_pred cccCCCcccccccCCCcCHHHHHHCCCCHHHHHHHHHHHcCCCCC-cccCCHHHHHHhCCHhhCCCccccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999874 5899999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhccccccchhhhccccccCc
Q 013441 375 GQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYP 436 (443)
Q Consensus 375 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 436 (443)
++||++++.+++++++.+++.+.+. ...++.++|+|++++.|+.+.+.|||..+
T Consensus 311 ~~~i~~~~~~~l~~~~~~~~~~~~~--------~~~~~~l~~~r~~~l~e~~~~~~~ff~~~ 364 (445)
T PRK12558 311 ARLLHALPFEAVKDRLAALGIPGEA--------AEAFWLAVRGNLDKLSDAADWWQIVHGPI 364 (445)
T ss_pred HHHHHhCCHHHHHHHHHHhhccccc--------cHHHHHHHHHhcCcHHHHHHHHHHHcCCC
Confidence 9999999999999999888754433 22367999999999999999999999753
No 5
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.7e-111 Score=869.59 Aligned_cols=353 Identities=39% Similarity=0.676 Sum_probs=337.8
Q ss_pred EEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceecc
Q 013441 58 VRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQS 137 (443)
Q Consensus 58 ~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~QS 137 (443)
|||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|+++|+||||+||| ||+||
T Consensus 2 ~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe---------~y~QS 72 (433)
T PRK12410 2 LRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDK---------LVYQS 72 (433)
T ss_pred CccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCC---------Ceehh
Confidence 899999999999999999999999999999999999999999999999999999999999999997 69999
Q ss_pred ccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCcee
Q 013441 138 ERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLK 217 (443)
Q Consensus 138 er~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~ 217 (443)
+|+++|++++++|+++|+||+||||++||+++|+.+...|.+++|+|+||+++.+|+ +.+|.+++||||+|. +.+.
T Consensus 73 eR~~~Y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~---~~~g~~~~iR~k~p~-~~~~ 148 (433)
T PRK12410 73 ENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEV---LNCNKPFVVRLKKPN-HTMS 148 (433)
T ss_pred ccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHH---HhcCCCeEEEEEcCC-Ccee
Confidence 999999999999999999999999999999999888888889999999999999886 567999999999995 8899
Q ss_pred eeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCC-CcEEEeece
Q 013441 218 ISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSM-PYFAHVSLI 296 (443)
Q Consensus 218 ~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~-P~f~Hlpli 296 (443)
|.|.++|++++++.+++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++ |.|+|+|+|
T Consensus 149 f~D~v~G~i~~~~~~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli 228 (433)
T PRK12410 149 FTDAIKGEVSFEPDEIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPII 228 (433)
T ss_pred eeeccceeEEeccccCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 599999999
Q ss_pred ecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHH
Q 013441 297 LAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQ 376 (443)
Q Consensus 297 l~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~ 376 (443)
++.+|+|||||+|+++|.+||++||+|+||+|||++|||+.+ +|+++++|+++.|+++++++++++||.+||.|+|++
T Consensus 229 ~~~~g~KLSKR~~~~~v~~~r~~G~~PeAi~n~l~~lG~~~~--~e~~~~~eli~~F~~~~i~~~~~~~d~~kL~~~N~~ 306 (433)
T PRK12410 229 LNEEGKKMSKRDNASSVKWLLEQGFLPSAIANYLILLGNKTP--KEIFTLEEAIEWFDIEKISKSPAKFDLKKLRFINRE 306 (433)
T ss_pred eCCCCCeeecccChhhHHHHHHCCCCHHHHHHHHHHhCCCCc--ccccCHHHHHHhCCHhhCCCccccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhccccccchhhhccccccCc
Q 013441 377 HLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYP 436 (443)
Q Consensus 377 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 436 (443)
||++++.+++++++. .. .+++.+++.++|+|+++|.|+++.++|||..+
T Consensus 307 ~i~~~~~~~l~~~~~-------~~----~~~~~~~~~l~~~r~~~l~d~~~~~~~~f~~~ 355 (433)
T PRK12410 307 HLKMLDDERLSKLLG-------FK----DKDLGGLAKLYLQEASTLNELKEKIDLIFSPK 355 (433)
T ss_pred HHHhCCHHHHHHHHh-------hh----hHHHHHHHHHHHHhcCcHHHHHHHHHHHcCCC
Confidence 999999999988773 11 25789999999999999999999999999754
No 6
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.7e-109 Score=866.31 Aligned_cols=370 Identities=39% Similarity=0.674 Sum_probs=349.2
Q ss_pred CceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 013441 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (443)
Q Consensus 54 ~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gp 133 (443)
.+|||||||||||+|||||+||||+||+|||++||+|||||||||++|++++++++|+++|+||||+|||+ |
T Consensus 3 ~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~--------p 74 (513)
T PRK14895 3 NNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGE--------V 74 (513)
T ss_pred CCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCC--------c
Confidence 47999999999999999999999999999999999999999999999999999999999999999999986 7
Q ss_pred eeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 013441 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (443)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 213 (443)
|+||+|+++|+++|++|+++|+||+||||+++|+++|+.+...+.+|.|+|+||++++++. .+|.+++||||+|.+
T Consensus 75 y~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~----~~~~~~~iR~k~p~~ 150 (513)
T PRK14895 75 IFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY----PTDIKPVIRLKTPRE 150 (513)
T ss_pred eeEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh----hcCCCeeEEEEcCCC
Confidence 9999999999999999999999999999999999999888888888999999999987753 358899999999988
Q ss_pred CceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEe
Q 013441 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHV 293 (443)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hl 293 (443)
+.+.|+|+++|.+++++..++|+||+|+||.||||||+||||++|+|||||||+||++|||+|+.||+||||+.|.|+|+
T Consensus 151 ~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~ 230 (513)
T PRK14895 151 GSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTHI 230 (513)
T ss_pred CceEEEeecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCCeEEEE
Confidence 89999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHH
Q 013441 294 SLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWM 373 (443)
Q Consensus 294 plil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~ 373 (443)
|+|+|.+|+|||||+|+++|.+||++||+|+||+|||++|||+.+ ++|+++++||++.|++++++++|++||++||.||
T Consensus 231 plv~~~~g~KLSKR~g~~~i~~~r~~G~~Peai~n~la~LG~s~~-~~e~~~~~el~~~F~~~~v~~s~~~FD~~KL~wl 309 (513)
T PRK14895 231 PLIHGADGAKLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWSHG-DDEIISMTQAIDWFNLDSLGKSPSKLDFAKMNSL 309 (513)
T ss_pred EeEEcCCCCccccccCchhHHHHHHCCCCHHHHHHHHHHhCCCCC-CcCCCCHHHHHhhCCHHhCcCCcCcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999965 5799999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHcCC----------------------------------C---------------CCCC
Q 013441 374 NGQHLRAIPSNELTKLIGERWKSTGI----------------------------------L---------------TESK 404 (443)
Q Consensus 374 n~~~l~~~~~~~l~~~~~~~~~~~~~----------------------------------~---------------~~~~ 404 (443)
|++||+.++.+++++++.|++.+.+. . ....
T Consensus 310 N~~yi~~l~~~el~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
T PRK14895 310 NAHYLRMLDNDSLTSKTVEILEQNYNKLLRKLAYREEFGGNTERSTAAYIDIREDASTGLTYKLPLAVELPKKFKVSEQE 389 (513)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999986421 0 0012
Q ss_pred chHHHHHHHHHhhccccccchhhhccccccCc
Q 013441 405 GPFVDEAIQLLKDGIDLVPDSDKALSNLLSYP 436 (443)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 436 (443)
.+++.+++.++|+|+++|.|+++.++|||..+
T Consensus 390 ~~~l~~~~~l~~~r~~~l~d~~~~~~~~f~~~ 421 (513)
T PRK14895 390 IGYIKQAMPSLLVRSETLLELTRLAQIYLVDS 421 (513)
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHhCCC
Confidence 36899999999999999999999999999753
No 7
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=5.7e-106 Score=846.67 Aligned_cols=374 Identities=48% Similarity=0.883 Sum_probs=358.6
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
+|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|+++|+||||+|||| ||
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~--------~~ 72 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEG--------PY 72 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCC--------ee
Confidence 4899999999999999999999999999999999999999999999999999999999999999999986 79
Q ss_pred eccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 013441 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (443)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 214 (443)
+||+|+++|+++|++|+++|+||+||||+++|+++|+.+...+.+|.|+|+||+++.+|++++..+|.++++|||+|.++
T Consensus 73 ~QS~r~~~y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~ 152 (470)
T TIGR00464 73 YQSQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEA 152 (470)
T ss_pred ehhCCHHHHHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCC
Confidence 99999999999999999999999999999999999988888888899999999999999988888999999999999877
Q ss_pred ceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEee
Q 013441 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (443)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlp 294 (443)
.+.|+|+++|++++++..++|+||+|+||+||||||+||||++|+|||||||+||+++||+|+++|++|||+.|.|+|+|
T Consensus 153 ~~~~~D~~~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p 232 (470)
T TIGR00464 153 VVSFNDQVRGEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHLP 232 (470)
T ss_pred ceeEEecccceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHH
Q 013441 295 LILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMN 374 (443)
Q Consensus 295 lil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n 374 (443)
++++.+|+|||||+|.++|++|+++||.|+|+.||++++||+++...|+++.+++++.|+++++++++++||++||.|||
T Consensus 233 ~l~~~~g~kLSKR~g~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~~~~~~i~~f~l~~~~~~~~~fd~~kL~~~N 312 (470)
T TIGR00464 233 MILDEDGKKLSKRDGATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSLEELIEIFSLNRVSKSPAKFDWKKLQWLN 312 (470)
T ss_pred eeecCCCccccccCCCccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccCCHHHHHHhcCcccCCCCCCeecHHHHHHHH
Confidence 99999999999999999999999999999999999999999998788999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhccccccchhhhccccccCc
Q 013441 375 GQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYP 436 (443)
Q Consensus 375 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 436 (443)
++||++++.+++.+.+.|++++.+-....+.+++.+++.++++|++++.|+.+.+.|||..|
T Consensus 313 ~~~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~d~~~~~~~~f~~~ 374 (470)
T TIGR00464 313 AHYIKELPDEELFELLDPHLKSLVNTDTLNREQLAELLLLFKERLKTLKEIAELIRLFFEDK 374 (470)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccHHHHHHHHHHHhCCC
Confidence 99999999999999999999887322223457899999999999999999999999999865
No 8
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-102 Score=809.79 Aligned_cols=368 Identities=44% Similarity=0.745 Sum_probs=346.3
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcee
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~ 135 (443)
|||||||||||+||||||||||+||+|||++||+|||||||||++|++++++++|++||+||||+|||+ ||+
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~--------~~~ 81 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEG--------PYY 81 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCc--------eee
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 799
Q ss_pred ccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCC-CCCCcCCCCCHHHHHHHHhcCCCceEEEecC--C
Q 013441 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPP-VYTGKWATATDAEVQKELERGTPYTYRFRVP--K 212 (443)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~-~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~--~ 212 (443)
||+|+++|++++++|+++|+||+||||++||+++|+.+...+.+| .|+|.|++|+.++.......|.+++||+|+| .
T Consensus 82 QS~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~ 161 (472)
T COG0008 82 QSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAH 161 (472)
T ss_pred hhhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCC
Confidence 999999999999999999999999999999999999999888877 9999999999988766655589999999999 4
Q ss_pred CCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 013441 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAH 292 (443)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~H 292 (443)
.+. .|.|+|+|++.+..+..+| |+.|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|
T Consensus 162 ~~~-~~~D~v~g~i~~~~~~~~d-v~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H 239 (472)
T COG0008 162 PGP-VFRDLVRGRIVFAPKHPDF-VILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAH 239 (472)
T ss_pred CCC-ccccceeeeEecCccCCcc-eeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEE
Confidence 444 8999999999998877789 99999999999999999999999999999999999999999999999999999999
Q ss_pred eeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCC-CCCcccCHHHHHhccccccccCCCccccHHHHH
Q 013441 293 VSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDG-TENEFFTLKQLVEKFTIERVNKSGAIFDSTKLR 371 (443)
Q Consensus 293 lplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~-~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~ 371 (443)
+|+|++.+|+|||||++.+++.+|+..|++|++|.||++++||+.. ...|+|++++++++|++..++++++.||.+||.
T Consensus 240 ~~li~~~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~ 319 (472)
T COG0008 240 LPLLLNEDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLD 319 (472)
T ss_pred eeeeecCCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhH
Confidence 9999999999999999999999999999999999999999999974 567899999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhccccccchhhhccccccCc
Q 013441 372 WMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYP 436 (443)
Q Consensus 372 ~~n~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 436 (443)
|+|++||+.++.+.+++.+.+++.+.+.....+.+++.+++.++++ ++.++.+...+||..+
T Consensus 320 ~~n~ry~~~~p~e~~~~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~---~~~~i~~~~~~~~~~~ 381 (472)
T COG0008 320 WLNPRYMRVDPVEVVIENLKPHLEEEGATLPLNPEMGERVVPLTKE---TLIEIERLDFFFFEDK 381 (472)
T ss_pred hhhHHHHHhCCHHHHHHhhhhhhhhhcccCCCCHHHHhhhhhhccc---hHHHHhHHHHHHhcch
Confidence 9999999999999999999998888765432257889999999999 8889999888888754
No 9
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=1.3e-97 Score=748.27 Aligned_cols=310 Identities=51% Similarity=0.903 Sum_probs=284.2
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
+|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|++||+||||+||++ ||
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~--------~~ 72 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYG--------PY 72 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STC--------EE
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCe--------EE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999964 89
Q ss_pred eccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCC--CCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 013441 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQ--LPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (443)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~--~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~ 212 (443)
+||+|+++|++++++|+++|+||+||||+++|++.|+.+...+ .++.|+|+|++++++|+++...+|.+++||||+|.
T Consensus 73 ~QS~r~~~Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~ 152 (314)
T PF00749_consen 73 YQSDRLEIYQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPM 152 (314)
T ss_dssp EGGGGHHHHHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSS
T ss_pred eHHHHHHHHHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeeccc
Confidence 9999999999999999999999999999999999998876655 67899999999999999988899999999999998
Q ss_pred CCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 013441 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAH 292 (443)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~H 292 (443)
+..+.|.|.+.|++.++...++||||.|+||+|||||||||||++|+|||||||+||++|||+|++||++|||++|.|+|
T Consensus 153 ~~~~~~~D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H 232 (314)
T PF00749_consen 153 ESPIAFRDLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAH 232 (314)
T ss_dssp TCCEEEEETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEE
T ss_pred ccccccccCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEe
Confidence 76799999999999998878999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeceecCCCceecccCCCCC--hHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHH
Q 013441 293 VSLILAPDRSKLSKRHGATS--VGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKL 370 (443)
Q Consensus 293 lplil~~dg~KLSKR~g~~s--i~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL 370 (443)
+|++++.+|+|||||+++.+ +..|++.|++|++++|||+++||++....|+++.+++++.|+++.++++++.||.+||
T Consensus 233 ~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f~~~~~~~~~~~fd~~kL 312 (314)
T PF00749_consen 233 LPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQFDLSKISKSPAVFDRKKL 312 (314)
T ss_dssp EEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC-GGGBHSSHEEHHHHHH
T ss_pred eeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHhhHhhccCchHHhCHHHh
Confidence 99999999999999999988 8999999999999999999999998888899999999999999999999999999999
Q ss_pred HH
Q 013441 371 RW 372 (443)
Q Consensus 371 ~~ 372 (443)
.|
T Consensus 313 ~w 314 (314)
T PF00749_consen 313 DW 314 (314)
T ss_dssp HH
T ss_pred CC
Confidence 98
No 10
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=2.3e-94 Score=716.65 Aligned_cols=293 Identities=34% Similarity=0.586 Sum_probs=274.3
Q ss_pred CCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 013441 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (443)
Q Consensus 53 ~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~g 132 (443)
..+|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|++||+||||+|||+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~-------- 74 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGP-------- 74 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCC--------
Confidence 457999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 013441 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (443)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~ 212 (443)
||+||+|+++|++++++|+++|+||+||||++||++.| +...+.++.|+|+||+++.++. .+++||||+|
T Consensus 75 ~~~QS~r~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~--~~~~~~~~~y~g~cr~~~~~~~-------~~~~iRlk~~- 144 (299)
T PRK05710 75 VLYQSQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAA--PAPPDGGGIYPGTCRDLLHGPR-------NPPAWRLRVP- 144 (299)
T ss_pred ceEeeccHHHHHHHHHHHHHCCCceecCCCHHHHHHHh--hhccCCCCcCCCccccCCcccc-------CCceEEEEcC-
Confidence 79999999999999999999999999999999998877 3344567899999999987542 3789999999
Q ss_pred CCceeeeecccceeeecCC-CCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEE
Q 013441 213 GGSLKISDLIRGEVSWNLD-TLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFA 291 (443)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~-~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~ 291 (443)
++.+.|+|+++|++.++.. .++||||+|+||+|||||||||||++|||||||||+||++|||+|++||++|||++|.|+
T Consensus 145 ~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~ 224 (299)
T PRK05710 145 DAVIAFDDRLQGRQHQDLALAVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPRYL 224 (299)
T ss_pred CCceEEEEecceeEeeCCCCCCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcCCCCCeEE
Confidence 5889999999999988776 889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCH--HHHHhccccccccCCCccccH
Q 013441 292 HVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTL--KQLVEKFTIERVNKSGAIFDS 367 (443)
Q Consensus 292 Hlplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~--~eli~~F~l~~v~~~~~~fd~ 367 (443)
|+|+|++.+|+|||||+++.+|++ .|+.|+ +.||+++|||+++...+++++ ++++++|+++++++++++|..
T Consensus 225 H~pll~~~~g~kLSKr~~~~~i~~---~g~~p~-l~~~l~~lG~~~~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 298 (299)
T PRK05710 225 HLPLVLNADGQKLSKQNGAPALDA---AGPLPV-LAAALRFLGQPPPAADASVEELLAQAVAHWDLTRLPRQAEINPA 298 (299)
T ss_pred EeecccCCCCCcccccCCccchhh---cCcCHH-HHHHHHHcCCCCCccccccccCHHHHHHhCCHhhCCcCCccCCC
Confidence 999999999999999999999987 899999 999999999998766677776 799999999999999998863
No 11
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=1.3e-91 Score=689.57 Aligned_cols=271 Identities=34% Similarity=0.564 Sum_probs=253.9
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcee
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~ 135 (443)
+||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|++||+||||+|||+ ||+
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~--------~~~ 72 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGE--------VVY 72 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCC--------eee
Confidence 489999999999999999999999999999999999999999999999999999999999999999996 699
Q ss_pred ccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCc
Q 013441 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGS 215 (443)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 215 (443)
||+|+++|++++++|+++|+||+||||++||++.+ ++.++.|+|+||+ +. ...+|.+++||||+|. +.
T Consensus 73 QS~r~~~Y~~~~~~L~~~G~aY~C~Ct~eel~~~~-----~~~~~~y~~~cr~-~~-----~~~~~~~~~~Rlk~~~-~~ 140 (272)
T TIGR03838 73 QSQRHALYQAALDRLLAAGLAYPCQCTRKEIAAAA-----GDGGGIYPGTCRN-GL-----LGRPARPAAWRLRVPD-GV 140 (272)
T ss_pred eeCCHHHHHHHHHHHHHcCCEEecCCCHHHHHHHh-----cCCCCCCCchhhc-cc-----ccccCCCceEEEecCC-CC
Confidence 99999999999999999999999999999998775 3456789999998 43 1245889999999995 78
Q ss_pred eeeeecccceeeec-CCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEee
Q 013441 216 LKISDLIRGEVSWN-LDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (443)
Q Consensus 216 ~~~~D~v~G~i~~~-~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlp 294 (443)
+.|.|.++|++.++ +..++||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||+.|.|+|+|
T Consensus 141 ~~~~D~~~g~~~~~~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~p 220 (272)
T TIGR03838 141 IAFDDRLQGPQQQDLAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLP 220 (272)
T ss_pred ceEEEeeeeEEEecCcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEech
Confidence 89999999999887 67889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHH
Q 013441 295 LILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLV 350 (443)
Q Consensus 295 lil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli 350 (443)
+|++.+|+|||||+++.+|+++ -.++++.|+++++||+++.+.|++|++||+
T Consensus 221 ll~~~~g~kLSKR~~~~~i~~~----~~~~~~~~~l~~lG~~~~~~~~~~~~~~~~ 272 (272)
T TIGR03838 221 LVVNADGEKLSKQNGAPALDLS----HPLPALLAALRFLGLPPPPELAAASPAELL 272 (272)
T ss_pred hhhCCCCCeeeccCCccchhcC----CcHHHHHHHHHHcCCCCCcccccCCHHHhC
Confidence 9999999999999999999876 368899999999999988778999999984
No 12
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=5.5e-80 Score=593.28 Aligned_cols=230 Identities=55% Similarity=0.963 Sum_probs=225.0
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
+|+|||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|++||+||||+||++ ||
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~--------~~ 72 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEG--------PY 72 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCC--------ee
Confidence 4799999999999999999999999999999999999999999999999999999999999999999986 79
Q ss_pred eccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 013441 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (443)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 214 (443)
+||+|+++|++++++|+++|
T Consensus 73 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 92 (230)
T cd00418 73 RQSDRFDLYRAYAEELIKKG------------------------------------------------------------ 92 (230)
T ss_pred ehhcCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999999
Q ss_pred ceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEee
Q 013441 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (443)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlp 294 (443)
|+|||||||||||++|||||||||+||++|||+|++||++|||+.|.|+|+|
T Consensus 93 ----------------------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~p 144 (230)
T cd00418 93 ----------------------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFP 144 (230)
T ss_pred ----------------------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEee
Confidence 8999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHH
Q 013441 295 LILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMN 374 (443)
Q Consensus 295 lil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n 374 (443)
+|++.+|+|||||+++.+|++||++|+.|+||+||++.|||+++.+.|+++++++++.|+++++++++++||++||.|+|
T Consensus 145 ll~~~~g~KLSKr~~~~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~li~~f~~~~~~~~~~~~d~~kL~~~N 224 (230)
T cd00418 145 RLLLEDGTKLSKRKLNTTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEEMIAAFSVERVNSADATFDWAKLEWLN 224 (230)
T ss_pred eeeCCCCCCccCcCCCcCHHHHHHCCCcHHHHHHHHHHcCCCCCCCccccCHHHHHHhcCHhhCCCCCcccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999988778999999999999999999999999999999999
Q ss_pred HHHHhc
Q 013441 375 GQHLRA 380 (443)
Q Consensus 375 ~~~l~~ 380 (443)
++||+.
T Consensus 225 ~~~l~~ 230 (230)
T cd00418 225 REYIRE 230 (230)
T ss_pred HHHhcC
Confidence 999973
No 13
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=7e-80 Score=649.08 Aligned_cols=305 Identities=22% Similarity=0.364 Sum_probs=274.0
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcee
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~ 135 (443)
|+|||||||||+||||||||||+||++||++||+|||||||||++|+.++++++|++||+||||+||++ ||+
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~--------~~~ 72 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGK--------IRY 72 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCC--------ceE
Confidence 689999999999999999999999999999999999999999999999999999999999999999986 699
Q ss_pred ccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH---HHhcCC----CceEEE
Q 013441 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK---ELERGT----PYTYRF 208 (443)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~---~~~~g~----~~~iR~ 208 (443)
||+|+++|+++|++|+++|+||+|+||+|+|++.|+.+ ..+.|++.||+++.+|..+ +|.+|+ ++++|+
T Consensus 73 qS~~~~~~~~~a~~Li~~G~AY~c~cs~eel~~~R~~~----~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~ 148 (522)
T TIGR00440 73 SSDYFDELYRYAEELIKKGLAYVDELTPEEIREYRGTL----TDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRA 148 (522)
T ss_pred ccccHHHHHHHHHHHHHcCCEEeecCCHHHHHHhhhhc----ccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEE
Confidence 99999999999999999999999999999999888533 3467999999999988654 565564 799999
Q ss_pred ecCCC-CceeeeecccceeeecCCCC--CCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCC
Q 013441 209 RVPKG-GSLKISDLIRGEVSWNLDTL--GDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGF 285 (443)
Q Consensus 209 k~~~~-~~~~~~D~v~G~i~~~~~~~--~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~ 285 (443)
|+|.. ....+.|.|.|++.+..... +++++ +||||||||||||+|||||||||+||++||+.|.+|++++++
T Consensus 149 Kid~~~~n~~~rD~V~~Ri~~~~h~~~gdk~~i-----yPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~ 223 (522)
T TIGR00440 149 KIDMASPFPVMRDPVAYRIKFAPHHQTGTKWCI-----YPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHI 223 (522)
T ss_pred eCcCCCCCceEeeeeEEEEecCCCCCCCCCeeE-----EeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCc
Confidence 99864 36789999999988765432 35554 899999999999999999999999999999999999999999
Q ss_pred C-CC---cEEEeeceecCCCceecccCCCC----------------ChHHHHHCCCCHHHHHHHHHHhCCCCCCC-Cccc
Q 013441 286 S-MP---YFAHVSLILAPDRSKLSKRHGAT----------------SVGQFREMGYLPQAMVNYLALLGWGDGTE-NEFF 344 (443)
Q Consensus 286 ~-~P---~f~Hlplil~~dg~KLSKR~g~~----------------si~~~r~~G~~peai~n~l~~LG~~~~~~-~e~~ 344 (443)
. .| .|+| ++.+|+|||||++.. ||.+||++||+|+||+||+++|||+..+. .+++
T Consensus 224 ~~~P~~~~F~r----ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~ 299 (522)
T TIGR00440 224 FPRPAQYEFSR----LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVV 299 (522)
T ss_pred cCCCceEEEEE----ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehh
Confidence 7 78 6777 555999999999764 89999999999999999999999997654 4899
Q ss_pred CHHHHHhccccccccCCCccccHHHH--HHHHHHH-HhcC
Q 013441 345 TLKQLVEKFTIERVNKSGAIFDSTKL--RWMNGQH-LRAI 381 (443)
Q Consensus 345 s~~eli~~F~l~~v~~~~~~fd~~kL--~~~n~~~-l~~~ 381 (443)
+++++++.|+..++++.+++||+.|| .++|+.+ +..+
T Consensus 300 ~l~~~~r~f~~~~~~r~~av~d~~kl~i~~~~~~~~~~~~ 339 (522)
T TIGR00440 300 RLESCIREDLNENAPRAMAVIDPVEVVIENLSDEYELATI 339 (522)
T ss_pred hHHHHHHHhhhhcCcccccccccceEEEecCCCCceEEec
Confidence 99999999999999999999999999 8888777 5543
No 14
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=1.5e-77 Score=630.71 Aligned_cols=258 Identities=26% Similarity=0.380 Sum_probs=233.7
Q ss_pred CCCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCC
Q 013441 49 TNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVG 128 (443)
Q Consensus 49 ~~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~g 128 (443)
+++..++|+|||||||||+||||||||||+||++||++||+|+|||||||++|+.++|+++|++||+||||+||+
T Consensus 5 ~~a~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~----- 79 (523)
T PLN03233 5 EGAIAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDS----- 79 (523)
T ss_pred CCCCCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCC-----
Confidence 455678899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHH---Hh----cC
Q 013441 129 GDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKE---LE----RG 201 (443)
Q Consensus 129 g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~---~~----~g 201 (443)
+|+||+|+++|+++|++|+++|+||+|+||++||++.|+. .+.+.||+++.+|..+. |. .+
T Consensus 80 ----~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~--------~~~~~~R~~s~ee~l~~~~~m~~G~~~~ 147 (523)
T PLN03233 80 ----VSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERAD--------RAESKHRNQSPEEALEMFKEMCSGKEEG 147 (523)
T ss_pred ----CccccccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhh--------hccCccccCCHHHHHHHHHHHhcccccC
Confidence 5899999999999999999999999999999999887642 36688999998875432 32 35
Q ss_pred CCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCC------------ccccchhhhhhcccCCcceEEecCCC
Q 013441 202 TPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNG------------QPVYNFCVTVDDATMAISHVIRAEEH 269 (443)
Q Consensus 202 ~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG------------~PtY~fA~vVDD~~m~ITHVIRG~D~ 269 (443)
.++++|+|++. ..++.+++||||+|+|| +|||||||||||++|||||||||+||
T Consensus 148 ~~~~lR~K~d~--------------~~~n~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~ 213 (523)
T PLN03233 148 GAWCLRAKIDM--------------QSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEY 213 (523)
T ss_pred CCeEEEEeCcc--------------cCCCCCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhh
Confidence 67888888752 33566889999999995 79999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccC-------CCC---------ChHHHHHCCCCHHHHHHHHHHh
Q 013441 270 LPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRH-------GAT---------SVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 270 l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~-------g~~---------si~~~r~~G~~peai~n~l~~L 333 (443)
++|||+|.+||++|||+.|.| |.+..++..|+|||||+ |.+ ||+.||++||+||||+||++.+
T Consensus 214 ~~~t~~q~~l~~aLg~~~P~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~ 292 (523)
T PLN03233 214 DDRDAQFFWIQKALGLRRPRI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQ 292 (523)
T ss_pred hcCCHHHHHHHHHhCCCCCee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHh
Confidence 999999999999999999999 55888999999999996 544 6999999999999999999999
Q ss_pred CCCCC
Q 013441 334 GWGDG 338 (443)
Q Consensus 334 G~~~~ 338 (443)
||+..
T Consensus 293 G~s~~ 297 (523)
T PLN03233 293 GASRR 297 (523)
T ss_pred CCCCC
Confidence 99875
No 15
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.6e-77 Score=627.86 Aligned_cols=272 Identities=24% Similarity=0.384 Sum_probs=241.1
Q ss_pred cceeeeecccccCCCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHH
Q 013441 37 RRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSW 116 (443)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~w 116 (443)
..|+......+.++...++|+|||||||||+||||||||||+||++||++||+|+|||||||++|+.++++++|++||+|
T Consensus 11 ~~f~~~~~~~dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 11 SNFIRQIIDEDLASGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRW 90 (554)
T ss_pred ccHHHHHHHhHHhcCCcCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHH
Confidence 46777777777665556789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH
Q 013441 117 LGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK 196 (443)
Q Consensus 117 LGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~ 196 (443)
|||+||++ ||+||+|+++|+++|++|+++|+||+||||++||++.|+.+.. +.+++.||+++.+|..+
T Consensus 91 LGi~~d~~--------~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~----~g~~~~~R~~s~eenl~ 158 (554)
T PRK05347 91 LGFDWSGE--------LRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTE----PGKNSPYRDRSVEENLD 158 (554)
T ss_pred cCCCCCCC--------ceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhh----cCCCCCccCCCHHHHHH
Confidence 99999986 7999999999999999999999999999999999999877654 34678899999988654
Q ss_pred H---HhcCC----CceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------CC-----ccccchhhhhhccc
Q 013441 197 E---LERGT----PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------NG-----QPVYNFCVTVDDAT 257 (443)
Q Consensus 197 ~---~~~g~----~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------DG-----~PtY~fA~vVDD~~ 257 (443)
. |.+|. ++++|.|++ +..++.+++|+||+|+ +| +||||||||||||+
T Consensus 159 ~~~~m~~G~~~~g~~vlR~Kid--------------~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l 224 (554)
T PRK05347 159 LFERMRAGEFPEGSAVLRAKID--------------MASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAI 224 (554)
T ss_pred HHHHHHCCCCCCCcEEEEEEee--------------ccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccc
Confidence 3 66775 566666653 2334557899999999 58 99999999999999
Q ss_pred CCcceEEecCCCCCCHHHHHHHHHHcCC-CCC---cEEEeeceecCCCceecccCCC-------C---------ChHHHH
Q 013441 258 MAISHVIRAEEHLPNTLRQALIYKALGF-SMP---YFAHVSLILAPDRSKLSKRHGA-------T---------SVGQFR 317 (443)
Q Consensus 258 m~ITHVIRG~D~l~ntp~q~~ly~aLg~-~~P---~f~Hlplil~~dg~KLSKR~g~-------~---------si~~~r 317 (443)
|||||||||.||++|||+|.+||++||| ..| .|+|+ +.+|+|||||++. + ||.+||
T Consensus 225 ~gITHvlRg~E~~~~t~~~~~i~~alg~~~~P~~~~F~rl----n~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lr 300 (554)
T PRK05347 225 EGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRL----NLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLR 300 (554)
T ss_pred cCCceEEeccccccChHHHHHHHHHcCCCCCCceEEEEEE----CCCCCccccccchhccccCcccCccCCcchhHHHHH
Confidence 9999999999999999999999999996 479 68886 5589999999954 3 799999
Q ss_pred HCCCCHHHHHHHHHHhCCCCC
Q 013441 318 EMGYLPQAMVNYLALLGWGDG 338 (443)
Q Consensus 318 ~~G~~peai~n~l~~LG~~~~ 338 (443)
++||+||||+||++++||+..
T Consensus 301 rrG~~PeAi~nf~~~lG~s~~ 321 (554)
T PRK05347 301 RRGYTPESIREFCERIGVTKQ 321 (554)
T ss_pred HCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999999875
No 16
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9e-77 Score=630.84 Aligned_cols=281 Identities=28% Similarity=0.439 Sum_probs=241.7
Q ss_pred cCCCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCC
Q 013441 48 NTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGV 127 (443)
Q Consensus 48 ~~~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~ 127 (443)
.+++.+++|+||||||||||||||||||||+||++||++||+|+|||||||++|+.++|+++|++||+||||+||++
T Consensus 45 L~~a~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~--- 121 (601)
T PTZ00402 45 LTNAEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVG--- 121 (601)
T ss_pred CCCCCCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCc---
Confidence 44667789999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH---HHhc----
Q 013441 128 GGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK---ELER---- 200 (443)
Q Consensus 128 gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~---~~~~---- 200 (443)
||+||+|+++|+++|++|+++|+||+|+||+++|++.|. ..|++.||+++.+|..+ .|.+
T Consensus 122 -----~~~QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~--------~g~p~~~R~~s~ee~l~~~~~m~~g~~~ 188 (601)
T PTZ00402 122 -----PTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRF--------DGVPTKYRDISVEETKRLWNEMKKGSAE 188 (601)
T ss_pred -----eeeccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHh--------CCCCCCCCCCCHHHHHHHHHhccccccC
Confidence 799999999999999999999999999999999976542 24888999999877543 2222
Q ss_pred CCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecC------------CccccchhhhhhcccCCcceEEecCC
Q 013441 201 GTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSN------------GQPVYNFCVTVDDATMAISHVIRAEE 268 (443)
Q Consensus 201 g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsD------------G~PtY~fA~vVDD~~m~ITHVIRG~D 268 (443)
+...++|.+++. ..++.+++|+||+|.+ |+|||||||||||++|||||||||.|
T Consensus 189 ~~~~~lR~kid~--------------~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E 254 (601)
T PTZ00402 189 GQETCLRAKISV--------------DNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNE 254 (601)
T ss_pred CCceEEEEeccc--------------CCCCCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechh
Confidence 335667766542 1234568999999964 99999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCCC----------------ChHHHHHCCCCHHHHHHHHHH
Q 013441 269 HLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGAT----------------SVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 269 ~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~~----------------si~~~r~~G~~peai~n~l~~ 332 (443)
|++|||+|.+||++|||++|.|+|+|+ +|.+|+|||||++.. +|..||++|++|+||++|+..
T Consensus 255 ~l~~tp~q~~L~~aLg~~~P~~~h~~r-Ln~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~ 333 (601)
T PTZ00402 255 YHDRNDQYYWFCDALGIRKPIVEDFSR-LNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQE 333 (601)
T ss_pred hhhCcHHHHHHHHHhCCCCceEEEEee-EcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999999999999996 899999999999752 455666666666666666666
Q ss_pred hCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhcCC
Q 013441 333 LGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIP 382 (443)
Q Consensus 333 LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~~~ 382 (443)
+|+ ++++++||+++|.|+|++||....
T Consensus 334 ~Gv-----------------------sk~~~~~d~~~L~~~nr~~l~~~a 360 (601)
T PTZ00402 334 QGM-----------------------SKTVNFMEWSKLWYFNTQILDPSV 360 (601)
T ss_pred hCC-----------------------CCCCcccCHHHHHHHHHHHHhhcC
Confidence 654 566777999999999999998643
No 17
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=6.1e-77 Score=575.79 Aligned_cols=239 Identities=65% Similarity=1.123 Sum_probs=233.7
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
+|+|||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++++++|++||+||||+||+|+..+|+|+||
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 013441 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (443)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 214 (443)
+||+|+++|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999888
Q ss_pred ceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEee
Q 013441 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (443)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlp 294 (443)
||+||||||+||||++|+|||||||+||+++|++|++|+++||++.|.|.|+|
T Consensus 101 ---------------------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~p 153 (239)
T cd00808 101 ---------------------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLP 153 (239)
T ss_pred ---------------------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeec
Confidence 79999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHH
Q 013441 295 LILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMN 374 (443)
Q Consensus 295 lil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n 374 (443)
++++.+|.|||||+|+.+|+.||++|+.|+||++|++.|||++....+.+++++++++|+++++++++++||.+||.|||
T Consensus 154 ll~~~~g~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~d~~kL~~~n 233 (239)
T cd00808 154 LILNPDGKKLSKRKGDTSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIELFDLERVSKSPAIFDPEKLDWLN 233 (239)
T ss_pred cccCCCCCcccCCCCCccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHHHhcCCHhhCCcCcCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999987777899999999999999999999999999999999
Q ss_pred HHHHhc
Q 013441 375 GQHLRA 380 (443)
Q Consensus 375 ~~~l~~ 380 (443)
++||+.
T Consensus 234 ~~~l~~ 239 (239)
T cd00808 234 GQYIRE 239 (239)
T ss_pred HHHhhC
Confidence 999973
No 18
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=1.2e-76 Score=642.82 Aligned_cols=299 Identities=23% Similarity=0.389 Sum_probs=267.5
Q ss_pred CCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 013441 50 NKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGG 129 (443)
Q Consensus 50 ~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg 129 (443)
+++.++|||||||||||||||||||+||+||++||++||+|+|||||||++|+.++|+++|++||+|||++||+
T Consensus 259 ~~t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~~~I~edL~WLG~~~d~------ 332 (788)
T PLN02859 259 KATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVEWMGWEPFK------ 332 (788)
T ss_pred hhcCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHHHHHHHHHHHcCCCCCC------
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH---HHH-----hcC
Q 013441 130 DYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ---KEL-----ERG 201 (443)
Q Consensus 130 ~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~---~~~-----~~g 201 (443)
+|+||+|++.++++|.+|+++|+||+||||++||++.|+.+ .++.||+.+.+|.. +.| ..|
T Consensus 333 ---~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~--------~~sp~Rd~s~eenl~lfe~m~~g~~~~G 401 (788)
T PLN02859 333 ---ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKK--------MNSPWRDRPIEESLKLFEDMRRGLIEEG 401 (788)
T ss_pred ---cccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhh--------ccCCCCCCChHHhhhhhHHHHhchhccC
Confidence 68999999755578999999999999999999999888643 23457777766532 222 345
Q ss_pred CCceEEEecCC-CCceeeeecccceeeecCC--CCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHH
Q 013441 202 TPYTYRFRVPK-GGSLKISDLIRGEVSWNLD--TLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQAL 278 (443)
Q Consensus 202 ~~~~iR~k~~~-~~~~~~~D~v~G~i~~~~~--~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ 278 (443)
++++|+|+|. .+...+.|.|.|++.+... +.+|++| +||||||||||||+|||||||||.||++|||+|.|
T Consensus 402 -~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~i-----yPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~w 475 (788)
T PLN02859 402 -KATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI-----YPSYDYAHCIVDSLENITHSLCTLEFETRRASYYW 475 (788)
T ss_pred -CeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEE-----EecccccccccccccCCceEeechhhhcCCHHHHH
Confidence 5999999986 5678999999999987664 4578888 89999999999999999999999999999999999
Q ss_pred HHHHcCCCCCcEEEeeceecCCCceecccCCC----------------CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCc
Q 013441 279 IYKALGFSMPYFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPQAMVNYLALLGWGDGTENE 342 (443)
Q Consensus 279 ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~----------------~si~~~r~~G~~peai~n~l~~LG~~~~~~~e 342 (443)
||++|||..|.|+|+| .+|.+|+|||||++. .||.+||++||+|+||+||++++||+.. +.|
T Consensus 476 l~~aLg~~~P~~~~f~-rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~-~~e 553 (788)
T PLN02859 476 LLDSLGLYQPYVWEYS-RLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRS-DNS 553 (788)
T ss_pred HHHHcCCCCCcEEeee-eECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCC-CCc
Confidence 9999999999999999 689999999999964 3899999999999999999999999975 457
Q ss_pred ccCHHHHHhccccccccCCC----ccccHHHHHHHH
Q 013441 343 FFTLKQLVEKFTIERVNKSG----AIFDSTKLRWMN 374 (443)
Q Consensus 343 ~~s~~eli~~F~l~~v~~~~----~~fd~~kL~~~n 374 (443)
++++++| +.|+.+.+++++ +++|+.|+...|
T Consensus 554 ~i~~~~L-e~~~r~~l~~~a~R~maV~dp~kv~i~n 588 (788)
T PLN02859 554 LIRMDRL-EHHIREELNKTAPRTMVVLHPLKVVITN 588 (788)
T ss_pred eecHHHH-HhhCHHhhCCcCcchheecCCeEEEEec
Confidence 9999999 999999999977 699999986655
No 19
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.1e-74 Score=608.31 Aligned_cols=277 Identities=32% Similarity=0.558 Sum_probs=242.3
Q ss_pred CCCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCc--ccCcHHHHHHHHHHHHHcCCCCCCCCC
Q 013441 49 TNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDL--ERSTKESEEAVLQDLSWLGLDWDEGPG 126 (443)
Q Consensus 49 ~~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~--~R~~~~~~~~I~~dL~wLGl~wDegp~ 126 (443)
+++..++|+|||||||||+|||||||+||+||++||++||+|||||||||+ +|+.++++++|++||+||||+||+
T Consensus 95 ~~ae~g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~--- 171 (567)
T PRK04156 95 PNAEKGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDE--- 171 (567)
T ss_pred CCCCCCeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCC---
Confidence 355577899999999999999999999999999999999999999999999 999999999999999999999997
Q ss_pred CCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH---HHHhcCC-
Q 013441 127 VGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ---KELERGT- 202 (443)
Q Consensus 127 ~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~---~~~~~g~- 202 (443)
+|+||+|+++|+++|++|+++|+||+|+||++++++.|. ..+++.||+++.+|.. +.|.+|+
T Consensus 172 ------~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~--------~g~~~~~R~~~~ee~l~~~e~m~~G~~ 237 (567)
T PRK04156 172 ------VVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRD--------AGKPCPHRDKSPEENLELWEKMLDGEY 237 (567)
T ss_pred ------ccCcccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHh--------cCCCCCCcCCCHHHHHHHHHHhhcCcc
Confidence 689999999999999999999999999999999977653 2368899999988754 3455554
Q ss_pred ---CceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecC---------C---ccccchhhhhhcccCCcceEEecC
Q 013441 203 ---PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSN---------G---QPVYNFCVTVDDATMAISHVIRAE 267 (443)
Q Consensus 203 ---~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsD---------G---~PtY~fA~vVDD~~m~ITHVIRG~ 267 (443)
++++|+|++. ...+.++.|||++|.+ + +|||||||+||||+|||||||||.
T Consensus 238 ~~g~~vlR~k~d~--------------~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~ 303 (567)
T PRK04156 238 KEGEAVVRVKTDL--------------EHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGK 303 (567)
T ss_pred ccCCeEEEEECcc--------------cCCCCCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEccc
Confidence 6899999863 2234567899999973 3 899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCC----------------CChHHHHHCCCCHHHHHHHHH
Q 013441 268 EHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPQAMVNYLA 331 (443)
Q Consensus 268 D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~----------------~si~~~r~~G~~peai~n~l~ 331 (443)
||++||++|.+||++|||+.|.|+|+|+|. .+|+|||||++. .+|..||++||+|+||++|++
T Consensus 304 d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~-~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~ 382 (567)
T PRK04156 304 DHIDNTEKQRYIYDYFGWEYPETIHYGRLK-IEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELII 382 (567)
T ss_pred ccccChHHHHHHHHHcCCCCceEEEcceec-CCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999999999999964 689999999932 489999999999999999999
Q ss_pred HhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhc
Q 013441 332 LLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRA 380 (443)
Q Consensus 332 ~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~ 380 (443)
.+||+.. ++.|++++|..+|+++|..
T Consensus 383 ~lG~s~~-----------------------~~~~~~~~L~~~nr~~ld~ 408 (567)
T PRK04156 383 EVGVKET-----------------------DATISWENLYAINRKLIDP 408 (567)
T ss_pred HhCCCCC-----------------------CcccCHHHHHHHHHHHHhc
Confidence 9999753 3335666666666666654
No 20
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=2.6e-73 Score=622.42 Aligned_cols=279 Identities=26% Similarity=0.355 Sum_probs=246.2
Q ss_pred CCCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCC
Q 013441 49 TNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVG 128 (443)
Q Consensus 49 ~~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~g 128 (443)
+++..++||||||||||||||||||||||+||++||++||+|||||||||++|+.++|+++|++||+||||+||+
T Consensus 207 ~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~----- 281 (722)
T PLN02907 207 PGAEEGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDA----- 281 (722)
T ss_pred ccCCCCceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCC-----
Confidence 345567899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH---HHh----cC
Q 013441 129 GDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK---ELE----RG 201 (443)
Q Consensus 129 g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~---~~~----~g 201 (443)
+|+||+|+++|+++|++|+++|+||+|+|+++++.+.|. ..|+++||+++.+|..+ +|. .|
T Consensus 282 ----~~~qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~--------~~~~~~~R~~~~ee~~~~~~~m~~g~~~~ 349 (722)
T PLN02907 282 ----VTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERM--------DGIESKCRNNSVEENLRLWKEMIAGSERG 349 (722)
T ss_pred ----cccccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHh--------cCCCCCccCCCHHHHHHHHHHHhcccccC
Confidence 589999999999999999999999999999998876653 15999999999988543 343 35
Q ss_pred CCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCC------------ccccchhhhhhcccCCcceEEecCCC
Q 013441 202 TPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNG------------QPVYNFCVTVDDATMAISHVIRAEEH 269 (443)
Q Consensus 202 ~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG------------~PtY~fA~vVDD~~m~ITHVIRG~D~ 269 (443)
.++++|+|++. ..++.+++|+|+.|.+| +|||||||||||++|||||||||+||
T Consensus 350 ~~~~lR~k~d~--------------~~~n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~ 415 (722)
T PLN02907 350 LQCCVRGKLDM--------------QDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEY 415 (722)
T ss_pred CCeEEEEEccc--------------CCCCCCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhh
Confidence 68999999862 34456789999999987 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccC-------CC---------CChHHHHHCCCCHHHHHHHHHHh
Q 013441 270 LPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRH-------GA---------TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 270 l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~-------g~---------~si~~~r~~G~~peai~n~l~~L 333 (443)
++|||+|++||++|||+.|.+.|.+. ++.+|+|||||+ |. .|++++|++||+|+||++|+..+
T Consensus 416 ~~~t~~q~~l~~~lg~~~p~~~~f~~-l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~ 494 (722)
T PLN02907 416 HDRNAQYYRILEDMGLRKVHIWEFSR-LNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQ 494 (722)
T ss_pred hhChHHHHHHHHHcCCCCCeeEEEEE-EcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHh
Confidence 99999999999999999986555554 577999999999 43 26899999999999999999999
Q ss_pred CCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhcCC
Q 013441 334 GWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIP 382 (443)
Q Consensus 334 G~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~~~ 382 (443)
||+. +++.||++||.|+|+++|....
T Consensus 495 g~s~-----------------------~~~~~~~~~l~~~nr~~id~~a 520 (722)
T PLN02907 495 GASK-----------------------NLNLMEWDKLWTINKKIIDPVC 520 (722)
T ss_pred CCCc-----------------------CCccccHHHHHHHHHHHhccCC
Confidence 9864 3455889999999999997543
No 21
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=3.4e-73 Score=603.17 Aligned_cols=258 Identities=32% Similarity=0.557 Sum_probs=233.9
Q ss_pred CCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 013441 50 NKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGG 129 (443)
Q Consensus 50 ~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg 129 (443)
++..++|+|||||||||+|||||||+||+||++||++||+|||||||||++|+.++|+++|++||+|||++||+
T Consensus 88 ~a~~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~------ 161 (560)
T TIGR00463 88 GAKMGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDE------ 161 (560)
T ss_pred CCcCCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCc------
Confidence 44557899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH---HHHhc----CC
Q 013441 130 DYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ---KELER----GT 202 (443)
Q Consensus 130 ~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~---~~~~~----g~ 202 (443)
+++||+|++.|.++|++|+++|+||+|+||++++++.|. ..|+++||+++.+|.. ++|.+ |.
T Consensus 162 ---~~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~--------~g~~~~cR~~s~eenl~~fe~m~~g~~~~~ 230 (560)
T TIGR00463 162 ---VVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFRELRN--------DGVACACRDRSVEENLEIWEEMLNGTEEGG 230 (560)
T ss_pred ---cccccccHHHHHHHHHHHHHcCCceeecCCHHHHHHHHh--------CCCCCCccCCCHHHHHHHHHHHhcccccCC
Confidence 579999999999999999999999999999999987763 2489999999987643 33443 56
Q ss_pred CceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCC------------ccccchhhhhhcccCCcceEEecCCCC
Q 013441 203 PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNG------------QPVYNFCVTVDDATMAISHVIRAEEHL 270 (443)
Q Consensus 203 ~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG------------~PtY~fA~vVDD~~m~ITHVIRG~D~l 270 (443)
++++|+|++. ..++..++|+|++|.++ +|||||||||||++|||||||||.||+
T Consensus 231 ~~~lR~K~d~--------------~~~n~~~rD~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~ 296 (560)
T TIGR00463 231 KVVVRAKTDY--------------KHKNPAIRDWVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHI 296 (560)
T ss_pred CeEEEEECCC--------------cCCCccccCcEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhh
Confidence 7899999862 33456789999999964 899999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCC----------------CCChHHHHHCCCCHHHHHHHHHHhC
Q 013441 271 PNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHG----------------ATSVGQFREMGYLPQAMVNYLALLG 334 (443)
Q Consensus 271 ~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g----------------~~si~~~r~~G~~peai~n~l~~LG 334 (443)
+||++|+++|++|||+.|.|+|+|++.+.+|.|||||+. ..||+.||++|++|+||+||+..+|
T Consensus 297 ~nT~rq~yl~~~lg~~~P~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G 376 (560)
T TIGR00463 297 DNERKQQYIYMYFGWELPEFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIG 376 (560)
T ss_pred cCCHHHHHHHHHcCCCCCeEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999998762 1479999999999999999999999
Q ss_pred CCCC
Q 013441 335 WGDG 338 (443)
Q Consensus 335 ~~~~ 338 (443)
|+..
T Consensus 377 ~s~~ 380 (560)
T TIGR00463 377 VKRN 380 (560)
T ss_pred CCCC
Confidence 9874
No 22
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=7.7e-73 Score=618.20 Aligned_cols=302 Identities=26% Similarity=0.393 Sum_probs=255.1
Q ss_pred cceeeeecccccCCCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHH
Q 013441 37 RRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSW 116 (443)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~w 116 (443)
..|+......+.+....++|+|||||||||+|||||||+||+||++||++||+|+|||||||++|+.++++++|++||+|
T Consensus 13 ~~f~~~~~~~~l~~g~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 13 PNFITEIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRW 92 (771)
T ss_pred hhHHHHHHHHHHhcCCCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHH
Confidence 36777777766665566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH
Q 013441 117 LGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK 196 (443)
Q Consensus 117 LGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~ 196 (443)
|||+||++ ||+||+|+++|+++|++|+++|+||+|+||++++++.|..+.. +.|++.||+++.+|..+
T Consensus 93 LG~~wd~~--------~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~----~g~~~~~R~~s~ee~l~ 160 (771)
T PRK14703 93 LGFDWGEH--------LYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTE----PGTPSPYRDRSVEENLD 160 (771)
T ss_pred cCCCCCCC--------ceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhh----cCCCCCCCCCCHHHHHH
Confidence 99999986 6999999999999999999999999999999999998876543 45677789999888654
Q ss_pred ---HHhcCC----CceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecC------------Cccccchhhhhhccc
Q 013441 197 ---ELERGT----PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSN------------GQPVYNFCVTVDDAT 257 (443)
Q Consensus 197 ---~~~~g~----~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsD------------G~PtY~fA~vVDD~~ 257 (443)
+|.+|. ++++|+|++ +..++..+.|+||+|.+ ++|||||||+||||+
T Consensus 161 ~~~~m~~G~~~~g~~vlR~Kid--------------~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l 226 (771)
T PRK14703 161 LFRRMRAGEFPDGAHVLRAKID--------------MSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAI 226 (771)
T ss_pred HHHHHhCCCCcCCCeEEEEEee--------------ccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccc
Confidence 567776 688999874 34456688999999984 489999999999999
Q ss_pred CCcceEEecCCCCCCHHHHHHHHHHcCCCC--C---cEEEeeceecCCCceecccC-------CCC---------ChHHH
Q 013441 258 MAISHVIRAEEHLPNTLRQALIYKALGFSM--P---YFAHVSLILAPDRSKLSKRH-------GAT---------SVGQF 316 (443)
Q Consensus 258 m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~--P---~f~Hlplil~~dg~KLSKR~-------g~~---------si~~~ 316 (443)
|||||||||+||++||++|.+||++||+.. | .|+|+|+ .|+|||||+ |.+ ||..|
T Consensus 227 ~gITHvlRg~E~~~~~~~~~~l~~~l~~~~~~P~~~~f~rl~l----~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~l 302 (771)
T PRK14703 227 EGVTHSICTLEFENNRAIYDWVLDHLGPWPPRPRQYEFARLAL----GYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQ 302 (771)
T ss_pred cCCcEEEecHhhhhccHHHHHHHHHhCCCCCCcceeEEEEecc----CCCcccccCchhccccCcccCCCCCchhhHHHH
Confidence 999999999999999999999999996543 5 7889888 688999998 443 79999
Q ss_pred HHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHH--HhccccccccC-CCccccHHHH
Q 013441 317 REMGYLPQAMVNYLALLGWGDGTENEFFTLKQL--VEKFTIERVNK-SGAIFDSTKL 370 (443)
Q Consensus 317 r~~G~~peai~n~l~~LG~~~~~~~e~~s~~el--i~~F~l~~v~~-~~~~fd~~kL 370 (443)
|++||+|+||+||+.++||+..+. .++++.| +.+-+|+...+ -.++.|+.|+
T Consensus 303 rrrG~~peAi~~f~~~lG~s~~~~--~i~~~~L~~~~R~~ld~~a~R~~~V~~p~~v 357 (771)
T PRK14703 303 RRRGVTPEAIRDFADQIGVAKTNS--TVDIGVLEFAIRDDLNRRAPRVMAVLDPLKV 357 (771)
T ss_pred HHCCCCHHHHHHHHHHhCCCccCc--eecHHHHHHHHHHHhccCCCceEEEcCCeEE
Confidence 999999999999999999997532 3444433 11223333332 3466677665
No 23
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=3.7e-70 Score=526.02 Aligned_cols=220 Identities=27% Similarity=0.430 Sum_probs=197.4
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
+|+|||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|++||+||||+||+ ||
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~---------~~ 71 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYK---------VT 71 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCC---------ce
Confidence 489999999999999999999999999999999999999999999999999999999999999999995 79
Q ss_pred eccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 013441 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (443)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 214 (443)
+||+|+++|++++++|+++|+||+ +|+. |
T Consensus 72 ~QS~r~~~Y~~~~~~L~~~g~aY~--------------------------~~~~------------~------------- 100 (238)
T cd00807 72 YASDYFDQLYEYAEQLIKKGKAYV--------------------------HHRT------------G------------- 100 (238)
T ss_pred ecccCHHHHHHHHHHHHHcCCeec--------------------------CCCC------------C-------------
Confidence 999999999999999999999997 0100 1
Q ss_pred ceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEee
Q 013441 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (443)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlp 294 (443)
+++++ +|||||||||||++|||||||||+||++|||+|++||++|||+.|.+.|..
T Consensus 101 -------------------~~~~i-----~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~ 156 (238)
T cd00807 101 -------------------DKWCI-----YPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFS 156 (238)
T ss_pred -------------------CCEEE-----EeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEE
Confidence 13333 499999999999999999999999999999999999999999999644333
Q ss_pred ceecCCCceecccCCCC----------------ChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccc
Q 013441 295 LILAPDRSKLSKRHGAT----------------SVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERV 358 (443)
Q Consensus 295 lil~~dg~KLSKR~g~~----------------si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v 358 (443)
. ++.+|+|||||+++. ++..|++.|++||||+||+++|||
T Consensus 157 h-ln~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~----------------------- 212 (238)
T cd00807 157 R-LNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGV----------------------- 212 (238)
T ss_pred E-ECCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCC-----------------------
Confidence 3 278999999999642 588999999999999999999997
Q ss_pred cCCCccccHHHHHHHHHHHHhcCC
Q 013441 359 NKSGAIFDSTKLRWMNGQHLRAIP 382 (443)
Q Consensus 359 ~~~~~~fd~~kL~~~n~~~l~~~~ 382 (443)
++++++||++||.++|++||...+
T Consensus 213 s~~~~~~~~~~l~~~nr~~id~~~ 236 (238)
T cd00807 213 SKADSTIDWDKLEACVRKDLNPTA 236 (238)
T ss_pred CCCCcccCHHHHHHHHHHHhccCC
Confidence 456777999999999999998654
No 24
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.5e-69 Score=567.95 Aligned_cols=296 Identities=23% Similarity=0.322 Sum_probs=249.5
Q ss_pred CCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 013441 50 NKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGG 129 (443)
Q Consensus 50 ~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg 129 (443)
..++++|+|||||||||+|||||||+||+||++||++||+|+|||||||++|+.++++++|++||+||||+||++
T Consensus 46 ~~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~~----- 120 (574)
T PTZ00437 46 AVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEMVKWMGWKPDWV----- 120 (574)
T ss_pred cccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCC-----
Confidence 446789999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHH---HHHHhcC----C
Q 013441 130 DYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEV---QKELERG----T 202 (443)
Q Consensus 130 ~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~---~~~~~~g----~ 202 (443)
++||+|++.|+++|++|+++|+||+|+||++||++.|..+ .++.||+++.+|. .++|.+| .
T Consensus 121 ----~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~--------~~~~~R~~~~eenL~lfe~M~~g~~~~g 188 (574)
T PTZ00437 121 ----TFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQR--------EDSPWRNRSVEENLLLFEHMRQGRYAEG 188 (574)
T ss_pred ----CcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcc--------cCCccccCCHHHHHHHHHHHhhcccccC
Confidence 6899999998899999999999999999999999888632 3678999998873 2344443 3
Q ss_pred CceEEEecCCCC-ceeeeecccceeeecCC-CCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHH
Q 013441 203 PYTYRFRVPKGG-SLKISDLIRGEVSWNLD-TLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIY 280 (443)
Q Consensus 203 ~~~iR~k~~~~~-~~~~~D~v~G~i~~~~~-~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly 280 (443)
..++|+|+|... ...+.|.|.+++.+... ..+|.+ +|+|||||||+||||+||||||||+.||..+.+.|.||+
T Consensus 189 ~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~----~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~wl~ 264 (574)
T PTZ00437 189 EATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKW----CIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLL 264 (574)
T ss_pred CeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCce----EEEccCcccceeechhcCCCEEeeechhhcccHHHHHHH
Confidence 469999998643 56678888888765432 335655 579999999999999999999999999999999999999
Q ss_pred HHcCCCCCcEEEeeceecCCCceecccCCC----------------CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCccc
Q 013441 281 KALGFSMPYFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFF 344 (443)
Q Consensus 281 ~aLg~~~P~f~Hlplil~~dg~KLSKR~g~----------------~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~ 344 (443)
++|+|..|..+|.|. +|.+|.|||||+.. .||..||++||+||||+||+..+||+..+. .+
T Consensus 265 ~~l~l~~p~~~ef~r-ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~--~i 341 (574)
T PTZ00437 265 EELNLWRPHVWEFSR-LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMN--VI 341 (574)
T ss_pred HHhCCcccceEeeee-ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccce--Ee
Confidence 999999999999999 89999999999876 489999999999999999999999987532 34
Q ss_pred CHHHHHhccccccccC----CCccccHHHH
Q 013441 345 TLKQLVEKFTIERVNK----SGAIFDSTKL 370 (443)
Q Consensus 345 s~~eli~~F~l~~v~~----~~~~fd~~kL 370 (443)
+++.| +.++-+.+.+ -.++.|+.|+
T Consensus 342 ~~~~L-e~~nR~~ld~~a~R~~~V~dPv~v 370 (574)
T PTZ00437 342 QISML-ENTLREDLDERCERRLMVIDPIKV 370 (574)
T ss_pred eHHHH-HHHHHHHhcccCccceEEccceEE
Confidence 44432 3332222222 3356666665
No 25
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=6.6e-67 Score=504.83 Aligned_cols=220 Identities=35% Similarity=0.609 Sum_probs=198.2
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCccc--CcHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLER--STKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R--~~~~~~~~I~~dL~wLGl~wDegp~~gg~~g 132 (443)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++| +.+++++.|++||+||||+||+
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~--------- 71 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDE--------- 71 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCC---------
Confidence 47999999999999999999999999999999999999999999999 9999999999999999999996
Q ss_pred ceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 013441 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (443)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~ 212 (443)
+|+||+|+++|++++++|+++|+||+ + +.
T Consensus 72 ~~~qS~r~~~y~~~~~~Li~~G~aY~-----------~----------------------------------------~~ 100 (240)
T cd09287 72 VVIASDRIELYYEYARKLIEMGGAYV-----------H----------------------------------------PR 100 (240)
T ss_pred ccchhccHHHHHHHHHHHHHcCCccc-----------C----------------------------------------cc
Confidence 68999999999999999999999996 0 00
Q ss_pred CCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 013441 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAH 292 (443)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~H 292 (443)
..+|+++ +|||||||||||++|||||||||+||++|||+|++||++|||+.|.|+|
T Consensus 101 -------------------~~~~~~i-----~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H 156 (240)
T cd09287 101 -------------------TGSKYRV-----WPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIH 156 (240)
T ss_pred -------------------cCCcEEE-----EEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEe
Confidence 0145666 4999999999999999999999999999999999999999999999999
Q ss_pred eeceecCCCceecccCCC----------------CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccc
Q 013441 293 VSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIE 356 (443)
Q Consensus 293 lplil~~dg~KLSKR~g~----------------~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~ 356 (443)
+|+|.+ +|+|||||++. ++++.||+.|+.|+||+||+..|||+..
T Consensus 157 ~pll~~-~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~------------------ 217 (240)
T cd09287 157 WGRLKI-EGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQT------------------ 217 (240)
T ss_pred eeeecC-CCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCC------------------
Confidence 999876 57999999942 4799999999999999999999999753
Q ss_pred cccCCCccccHHHHHHHHHHHHhcCC
Q 013441 357 RVNKSGAIFDSTKLRWMNGQHLRAIP 382 (443)
Q Consensus 357 ~v~~~~~~fd~~kL~~~n~~~l~~~~ 382 (443)
+..+++++|..+|+++|...+
T Consensus 218 -----~~~~~~~~l~~~~r~~l~~~~ 238 (240)
T cd09287 218 -----DATISWENLYAINRKLIDPRA 238 (240)
T ss_pred -----CCccCHHHHHHHHHHHhccCC
Confidence 233667788888888876553
No 26
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.5e-44 Score=365.85 Aligned_cols=276 Identities=26% Similarity=0.372 Sum_probs=234.7
Q ss_pred CCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 013441 50 NKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGG 129 (443)
Q Consensus 50 ~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg 129 (443)
.+..++|+|||+|.|+||||||||++||+|+-||..++|+.|+|+|||+|+++.++|++.|++||.-|||.+|.
T Consensus 195 ~ae~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~------ 268 (712)
T KOG1147|consen 195 GAEMGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDR------ 268 (712)
T ss_pred ccccCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcce------
Confidence 55667999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHH---HHHHhcCC----
Q 013441 130 DYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEV---QKELERGT---- 202 (443)
Q Consensus 130 ~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~---~~~~~~g~---- 202 (443)
..+-|++++...+++.+||++|+||....+.|.+...|+ .+-+.+||+.+.||. .++|.+|.
T Consensus 269 ---~TyTSDyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~--------~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl 337 (712)
T KOG1147|consen 269 ---VTYTSDYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDERE--------QGVESKCRSNSVEENLRIWEEMKKGSEKGL 337 (712)
T ss_pred ---eeechhhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHh--------ccccccccCCCHHHHHHHHHHHhccchhhh
Confidence 468999999999999999999999988877776655443 134667999998773 45565554
Q ss_pred CceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecC------------CccccchhhhhhcccCCcceEEecCCCC
Q 013441 203 PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSN------------GQPVYNFCVTVDDATMAISHVIRAEEHL 270 (443)
Q Consensus 203 ~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsD------------G~PtY~fA~vVDD~~m~ITHVIRG~D~l 270 (443)
..++|-|++ ++.++.++.|+||+|++ -||||+|||.|-|.++||||.+|..|+.
T Consensus 338 ~~CvRaKId--------------m~s~NkaMRDPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYh 403 (712)
T KOG1147|consen 338 KCCVRAKID--------------MSSPNKAMRDPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYH 403 (712)
T ss_pred hhheeeeec--------------ccCCCccccCCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhcc
Confidence 456776654 24467789999999996 3799999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCC-----------C-----CChHHHHHCCCCHHHHHHHHHHhC
Q 013441 271 PNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHG-----------A-----TSVGQFREMGYLPQAMVNYLALLG 334 (443)
Q Consensus 271 ~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g-----------~-----~si~~~r~~G~~peai~n~l~~LG 334 (443)
...++..|+.+|||...|..+..+. +|...+.||||+- . .+|+..+++|..-|++++|+..-|
T Consensus 404 DRn~Qyyw~i~al~LRkp~iwefsR-lN~~nTvLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG 482 (712)
T KOG1147|consen 404 DRNAQYYWFIDALGLRKPHIWEFSR-LNFVNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQG 482 (712)
T ss_pred ccchHHHHHHHHhcCCccceeehhh-hhhHhhhhhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhC
Confidence 9999999999999999998888887 5667889999972 1 489999999999999999998888
Q ss_pred CCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhc
Q 013441 335 WGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRA 380 (443)
Q Consensus 335 ~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~ 380 (443)
-|. +-..++|+|++.+|++.|.-
T Consensus 483 ~Sk-----------------------~v~~meWdkiWAfNKKvIDP 505 (712)
T KOG1147|consen 483 PSK-----------------------NVVTMEWDKIWAFNKKVIDP 505 (712)
T ss_pred Ccc-----------------------ceeeeehHhhhhhcccccCC
Confidence 653 22336677777777777643
No 27
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-43 Score=366.55 Aligned_cols=300 Identities=22% Similarity=0.353 Sum_probs=242.8
Q ss_pred CCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 013441 50 NKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGG 129 (443)
Q Consensus 50 ~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg 129 (443)
..++|+|+|||+|.|+|+|||||+.+..+||-|||.+||...||+|||+++.+.++|.++|.++.+|||.+|=.
T Consensus 243 ~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~k------ 316 (764)
T KOG1148|consen 243 ERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYK------ 316 (764)
T ss_pred HhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCcee------
Confidence 34678999999999999999999999999999999999999999999999999999999999999999998533
Q ss_pred CCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH---HHHhcC----C
Q 013441 130 DYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ---KELERG----T 202 (443)
Q Consensus 130 ~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~---~~~~~g----~ 202 (443)
..+.|++++...+.|.+||++|+||.|.|+.+||.+.| |.... ...||+.+-+|.. +.|.+| .
T Consensus 317 ---vTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~r------g~~~~-~spwRdRPieEsL~lF~~Mr~Gk~~eG 386 (764)
T KOG1148|consen 317 ---VTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERR------GFNER-LSPWRDRPIEESLRLFEDMRDGKYEEG 386 (764)
T ss_pred ---eecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhc------CCCCC-CCccccCcHHHHHHHHHHHhcCCcCcC
Confidence 57899999999999999999999999999999998766 22222 3456777766643 335555 2
Q ss_pred CceEEEecCCC-CceeeeecccceeeecC--CCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHH
Q 013441 203 PYTYRFRVPKG-GSLKISDLIRGEVSWNL--DTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALI 279 (443)
Q Consensus 203 ~~~iR~k~~~~-~~~~~~D~v~G~i~~~~--~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~l 279 (443)
..++|+|++.+ +.....|+|.-+|.+.. .+-+++.| ||||+|++++.|.++.|||.+|..|+.++...+.||
T Consensus 387 eAtLRmK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcI-----YPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WL 461 (764)
T KOG1148|consen 387 EATLRMKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCI-----YPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWL 461 (764)
T ss_pred hhheeeeeeccCCCccccccceeeeecCCCCCCCCceEE-----ecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHH
Confidence 47899998753 44556677766664432 34455555 699999999999999999999999999988899999
Q ss_pred HHHcCCCCCcEEEeeceecCCCceecccCCC----------------CChHHHHHCCCCHHHHHHHHHHhCCCCCCC-Cc
Q 013441 280 YKALGFSMPYFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPQAMVNYLALLGWGDGTE-NE 342 (443)
Q Consensus 280 y~aLg~~~P~f~Hlplil~~dg~KLSKR~g~----------------~si~~~r~~G~~peai~n~l~~LG~~~~~~-~e 342 (443)
+.||+.-.|..+..+. ||..++.||||+-. .++..+|++|++|+||.+|++.||.+.... -+
T Consensus 462 cnaL~iY~P~qwEYgR-LNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~~~i~ 540 (764)
T KOG1148|consen 462 CNALEIYCPVQWEYGR-LNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQTTID 540 (764)
T ss_pred Hhhhhcccchhhhhce-eeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceeeceec
Confidence 9999999998888887 67789999999721 389999999999999999999999876432 23
Q ss_pred ccCHHHHHhccccccccCCCccccHHHHH
Q 013441 343 FFTLKQLVEKFTIERVNKSGAIFDSTKLR 371 (443)
Q Consensus 343 ~~s~~eli~~F~l~~v~~~~~~fd~~kL~ 371 (443)
.--++..+..+--+..++..++.++-|+.
T Consensus 541 v~~lE~~VRd~Ln~tapR~M~VleplkVt 569 (764)
T KOG1148|consen 541 VARLEAAVRDYLNDTAPRLMFVLEPLKVT 569 (764)
T ss_pred HHHHHHHHHHHHhccCcceEEeecceEEE
Confidence 33455555555333444466777777763
No 28
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.91 E-value=2.7e-24 Score=205.22 Aligned_cols=180 Identities=24% Similarity=0.335 Sum_probs=143.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEEecCCCcc------------cCcHHHHHHHHHHHHHcCCCCCC
Q 013441 61 APSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDLE------------RSTKESEEAVLQDLSWLGLDWDE 123 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar-----~~gG~fiLRIEDTD~~------------R~~~~~~~~I~~dL~wLGl~wDe 123 (443)
.|.|||++||||+|++++-..++| .+...++--++|.+.+ ..+..+.+.+.+++++||+.+|.
T Consensus 8 spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~d~ 87 (212)
T cd00671 8 SANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRFDV 87 (212)
T ss_pred CCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCce
Confidence 479999999999999887666665 3445555556666542 23466778999999999999997
Q ss_pred CCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCC
Q 013441 124 GPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTP 203 (443)
Q Consensus 124 gp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~ 203 (443)
. ++-|+..+...+++++|+++|.+|.- + |.
T Consensus 88 ~---------~~es~~~~~~~~~i~~L~~~g~~~~~-----------------------~-----------------g~- 117 (212)
T cd00671 88 W---------FGESSYLGLMGKVVELLEELGLLYEE-----------------------D-----------------GA- 117 (212)
T ss_pred e---------cchhhhhhHHHHHHHHHHHCCCEEEe-----------------------C-----------------Cc-
Confidence 4 25666688899999999999999841 1 10
Q ss_pred ceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccc---hhhhhhcccCCcceE--EecCCCCCCHHHHHH
Q 013441 204 YTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYN---FCVTVDDATMAISHV--IRAEEHLPNTLRQAL 278 (443)
Q Consensus 204 ~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~---fA~vVDD~~m~ITHV--IRG~D~l~ntp~q~~ 278 (443)
+=+.+.. | ....|+||.||||.|||+ +|+++|+..++++|| |+|+||...+++|..
T Consensus 118 --~~~~~~~-----~------------~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~ 178 (212)
T cd00671 118 --LWLDLTE-----F------------GDDKDRVLVRSDGTYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFA 178 (212)
T ss_pred --EEEechh-----h------------CCCCCeEEEECCCCccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHH
Confidence 0011100 1 134799999999999998 899999999999999 899999999999999
Q ss_pred HHHHcCCC-CCcEEEe--eceecCCCceecccCC
Q 013441 279 IYKALGFS-MPYFAHV--SLILAPDRSKLSKRHG 309 (443)
Q Consensus 279 ly~aLg~~-~P~f~Hl--plil~~dg~KLSKR~g 309 (443)
++++||++ .|.+.|+ ++|.+++|+|||||+|
T Consensus 179 ~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 179 ALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred HHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 99999998 7889999 6999988999999986
No 29
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.88 E-value=1.4e-21 Score=206.72 Aligned_cols=228 Identities=23% Similarity=0.353 Sum_probs=165.2
Q ss_pred CceEEE-eCCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc---cC----------cHHHHHHHHHHH
Q 013441 54 GQVRVR-FAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE---RS----------TKESEEAVLQDL 114 (443)
Q Consensus 54 ~~vr~R-FAPSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~~---R~----------~~~~~~~I~~dL 114 (443)
+.+++. .+|+|+|++||||+|+++...+++|. ++..|+..|+|+|.+ +. ...+++.+.+++
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345555 68999999999999999988888886 778999999999874 11 578899999999
Q ss_pred HHcCC-CCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee-----ecCCHHHHHHHHHHHHhCCCCCCCCCcCCC
Q 013441 115 SWLGL-DWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTGKWAT 188 (443)
Q Consensus 115 ~wLGl-~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ 188 (443)
++||| .+|..| +.|++.+.+++++++|+++|+||. .||... -+.| |.-.+
T Consensus 102 ~~Lgi~~~d~~~---------r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~--------------~~~y-g~ls~ 157 (463)
T PRK00260 102 DALNVLPPDIEP---------RATEHIPEIIELIERLIDKGHAYEADGDVYFDVRK--------------FPDY-GKLSG 157 (463)
T ss_pred HHcCCCCCCccc---------cccccHHHHHHHHHHHHHCCCEEEecCeEEEeccc--------------cccc-ccCCC
Confidence 99999 566542 678899999999999999999996 344321 1234 22222
Q ss_pred CCHHHHHHHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------------CCccccchhh-hhh
Q 013441 189 ATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCV-TVD 254 (443)
Q Consensus 189 ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------------DG~PtY~fA~-vVD 254 (443)
.+.+++ ..|. | ++ ......+..||+|||. .|.|.||..| +.-
T Consensus 158 ~~~~~~----~~~~----~--~~--------------~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~ 213 (463)
T PRK00260 158 RNLDEL----QAGA----R--VE--------------VAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMS 213 (463)
T ss_pred CCHHHH----hccC----c--CC--------------cccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHH
Confidence 223322 2232 1 11 0011245679999986 3789999999 555
Q ss_pred cccCCcceEEe--cCC----CCCCHHHHHHHHHHcCCCCCc-EEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHH
Q 013441 255 DATMAISHVIR--AEE----HLPNTLRQALIYKALGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAM 326 (443)
Q Consensus 255 D~~m~ITHVIR--G~D----~l~ntp~q~~ly~aLg~~~P~-f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai 326 (443)
....|.+-.|+ |.| |+.|.-.|.. .++|.+.+. |.|..+ ++.+|+|||||.|+ +++.++.+. |.|+++
T Consensus 214 ~~~lg~~~Dih~gG~DlifpHh~neiaqs~--a~~g~p~~~~w~H~g~-v~~~G~KMSKS~GN~i~~~dll~~-~~~d~l 289 (463)
T PRK00260 214 TKYLGETFDIHGGGADLIFPHHENEIAQSE--AATGKPFANYWMHNGF-VTVNGEKMSKSLGNFFTIRDLLKK-YDPEVL 289 (463)
T ss_pred HHhcCCCcceecCccccCCCchHhHHHHHH--HhcCCCcceEEEEccE-EccCCCcccCcCCCCCCHHHHHHH-cCchHh
Confidence 55567777777 899 6777766653 336733344 566666 56899999999998 589999886 999999
Q ss_pred HHHHHHh
Q 013441 327 VNYLALL 333 (443)
Q Consensus 327 ~n~l~~L 333 (443)
+.++..-
T Consensus 290 R~~ll~~ 296 (463)
T PRK00260 290 RFFLLSA 296 (463)
T ss_pred HHHHHhC
Confidence 9988753
No 30
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.86 E-value=1.3e-20 Score=199.27 Aligned_cols=236 Identities=25% Similarity=0.320 Sum_probs=164.4
Q ss_pred eCCCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEEecCCCcc---c----------CcHHHHHHHHHHHHHcCCCC
Q 013441 60 FAPSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDLE---R----------STKESEEAVLQDLSWLGLDW 121 (443)
Q Consensus 60 FAPSPTG~LHiG~~rtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---R----------~~~~~~~~I~~dL~wLGl~w 121 (443)
-.|+|+|++||||+|+++...+++| .+...|+..++|+|.+ + -++.+.+.+.+++++|||.+
T Consensus 27 cgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~ 106 (465)
T TIGR00435 27 CGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLP 106 (465)
T ss_pred ecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999888888 5789999999999974 1 13688899999999999998
Q ss_pred CCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeee------cCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH
Q 013441 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRC------FCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ 195 (443)
Q Consensus 122 Degp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~C------fcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~ 195 (443)
|.-. | +.|++.+.+.+++++|+++|+||.+ ||... -+.| |.+.....++
T Consensus 107 d~~~-------~-raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~--------------~~~y-G~ls~~~~~~-- 161 (465)
T TIGR00435 107 PDLE-------P-RATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSK--------------FKDY-GKLSKQDLDQ-- 161 (465)
T ss_pred CcCC-------c-cccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccc--------------cchh-ccCCCCCHHH--
Confidence 7621 2 7889999999999999999999974 22111 1234 3332222222
Q ss_pred HHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------------CCccccchhhhhh-cccCCcc
Q 013441 196 KELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTVD-DATMAIS 261 (443)
Q Consensus 196 ~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------------DG~PtY~fA~vVD-D~~m~IT 261 (443)
+..|.. ..+ | ....+..||+|||+ .|.|.||+.|++- ....|.+
T Consensus 162 --~~~~~~----~~~---------~-------~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~ 219 (465)
T TIGR00435 162 --LEAGAR----VDV---------D-------EAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQ 219 (465)
T ss_pred --Hhcccc----cCc---------c-------cccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCC
Confidence 222321 000 0 01235679999886 3789999999753 3334544
Q ss_pred eEEe--cCCCC----CCHHHHHHHHHHcCCCCCcE-EEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHh
Q 013441 262 HVIR--AEEHL----PNTLRQALIYKALGFSMPYF-AHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 262 HVIR--G~D~l----~ntp~q~~ly~aLg~~~P~f-~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~L 333 (443)
-.|+ |.||+ .|...|.. .+.|.+.+.+ .|..+ +..+|+|||||.|+ ++++++.+. |.|++++.|+..-
T Consensus 220 ~Dih~gG~Dl~fpHhene~aqs~--a~~g~~~~~~~~h~g~-v~~~g~KMSKS~GN~i~~~dll~~-~~~dalR~~ll~~ 295 (465)
T TIGR00435 220 IDIHGGGVDLIFPHHENEIAQSE--AAFGKQLAKYWMHNGF-LMIDNEKMSKSLGNFFTVRDVLKN-YDPEILRYFLLSV 295 (465)
T ss_pred ceeeccccccccchHHHHHHHHH--HhcCCCCCcEEEEeeE-EEecCccccccCCCcCCHHHHHHH-CCHHHHHHHHHhC
Confidence 4555 88875 45555543 2357655554 67666 56799999999998 589999887 9999999988765
Q ss_pred CCCCCCCCcccCHHHH
Q 013441 334 GWGDGTENEFFTLKQL 349 (443)
Q Consensus 334 G~~~~~~~e~~s~~el 349 (443)
.+. .+-.|+.+.+
T Consensus 296 ~~~---~~l~fs~~~l 308 (465)
T TIGR00435 296 HYR---SPLDFSEELL 308 (465)
T ss_pred CCC---CCCccCHHHH
Confidence 433 2233555533
No 31
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.86 E-value=3.3e-21 Score=205.88 Aligned_cols=246 Identities=23% Similarity=0.312 Sum_probs=173.0
Q ss_pred CCceEEEe-CCCCCCcCChhhHHHHHHHHHHHHH--cCCe---EEEEecCCCc-------------ccCcHHHHHHHHHH
Q 013441 53 DGQVRVRF-APSPTGNLHVGGARTALFNYLFARS--KGGK---FVLRIEDTDL-------------ERSTKESEEAVLQD 113 (443)
Q Consensus 53 ~~~vr~RF-APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~---fiLRIEDTD~-------------~R~~~~~~~~I~~d 113 (443)
+++|.+-| +|+|||++||||+|++++...+||- ..|. ++--++|.+. ++.++.+.+.+.++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999 8899999999999999988888884 4554 4555588774 34567888999999
Q ss_pred HHHcCCCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCH
Q 013441 114 LSWLGLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATD 191 (443)
Q Consensus 114 L~wLGl~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~ 191 (443)
|++||+.+|.. ++.|+ +.+.+++++++|.++|.+|.= ++
T Consensus 190 l~~LgI~~D~~---------~~es~~~~~~~~~~~~~~L~~~G~~y~~----------------------~~-------- 230 (507)
T PRK01611 190 LDRLGVHFDVW---------FSESELYYNGKVDEVVEDLKEKGLLYVE----------------------SD-------- 230 (507)
T ss_pred HHHcCCeeeEE---------eecCcchhcchHHHHHHHHHHCCCEEEe----------------------eC--------
Confidence 99999999863 23332 345789999999999999920 11
Q ss_pred HHHHHHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccc---hhhhhhcccCCcceE--Eec
Q 013441 192 AEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYN---FCVTVDDATMAISHV--IRA 266 (443)
Q Consensus 192 ~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~---fA~vVDD~~m~ITHV--IRG 266 (443)
|. +-|++.. |.| -.|+||+|+||.+||. +|...+-... .+++ |.|
T Consensus 231 ---------Ga---~~~~~~~-----~~~------------~~~~vl~ksdG~~~Y~t~Dia~~~~k~~~-~d~~i~V~g 280 (507)
T PRK01611 231 ---------GA---LWVRLTE-----FGD------------DKDRVLIKSDGTYTYFTRDIAYHLYKFER-FDRVIYVVG 280 (507)
T ss_pred ---------Cc---EEEEchh-----hCC------------CCCeEEEECCCCccchHHHHHHHHHHHhh-cCEEEEEEC
Confidence 11 1111111 111 1489999999999995 7777765543 5666 669
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCc---EEEe--eceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCC
Q 013441 267 EEHLPNTLRQALIYKALGFSMPY---FAHV--SLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTE 340 (443)
Q Consensus 267 ~D~l~ntp~q~~ly~aLg~~~P~---f~Hl--plil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~ 340 (443)
.||....+++..+.++||+.++. +.|. .++++.+|+|||||.|+ ++++++.++++.. +.+-+..- ..
T Consensus 281 ~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~--~~~~~~~~-----~~ 353 (507)
T PRK01611 281 ADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGR--ARELIEEK-----EI 353 (507)
T ss_pred CChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHH--HHHHHHhh-----hh
Confidence 99998888888999999987553 7885 58899999999999997 5888888763221 11111100 01
Q ss_pred CcccCHHHHHhccccccccCCCccccHHHHHHHHH
Q 013441 341 NEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNG 375 (443)
Q Consensus 341 ~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~ 375 (443)
.+.+.++ .+..|.+..-..++..||++++..+++
T Consensus 354 a~~vgid-AiR~~~L~~~~~~~~~Fd~~~~~~~~~ 387 (507)
T PRK01611 354 AEAVGID-AVRYFDLSRSRDKDLDFDLDLALSFEG 387 (507)
T ss_pred hhhhccc-eeEehhhhcCCCCCCccCHHHHHhhcC
Confidence 1122222 345677766666888899998888865
No 32
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.2e-20 Score=196.15 Aligned_cols=231 Identities=23% Similarity=0.308 Sum_probs=162.3
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEEecCCCcc---cC----------cHHHHHHHHHHHHHcCCC-C
Q 013441 61 APSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDLE---RS----------TKESEEAVLQDLSWLGLD-W 121 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---R~----------~~~~~~~I~~dL~wLGl~-w 121 (443)
.|+++.+.||||+||+++=.+..| .+..+|+.+|+|+|.+ |. .+.++++..+|++.||+. +
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 489999999999999985444444 4446899999999975 22 467889999999999995 6
Q ss_pred CCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHH-HHHHHHHhCCCCCCCCCcCCCC-CHHHHHHHHh
Q 013441 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELE-KMKEIAKLKQLPPVYTGKWATA-TDAEVQKELE 199 (443)
Q Consensus 122 Degp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~-~~r~~~~~~~~~~~Y~g~cr~l-s~~e~~~~~~ 199 (443)
|..| +.|++++.+.+++++|+++|+||.-. ...+. ..+ .-+.| |.+... +.++ +.
T Consensus 109 ~~~P---------raTe~I~~iI~~I~~LiekG~AY~~~--~G~VYFdv~-------~f~~Y-G~LS~~~~le~----l~ 165 (464)
T COG0215 109 DIEP---------RATEHIDEIIEFIEKLIEKGYAYVAD--DGDVYFDVS-------KFKDY-GKLSGRDSLEE----LQ 165 (464)
T ss_pred cccC---------cHhhCHHHHHHHHHHHHHCCceEEec--CCcEEEecc-------cchhh-HhhcCCCChhH----Hh
Confidence 7765 79999999999999999999999741 11110 000 01234 222111 1222 22
Q ss_pred cCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------------CCccccchhhhh-hcccCCcceEEe
Q 013441 200 RGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV-DDATMAISHVIR 265 (443)
Q Consensus 200 ~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------------DG~PtY~fA~vV-DD~~m~ITHVIR 265 (443)
.|. |.. +.....+..||||||+ .|.|.||+.|++ -+...|-+..|+
T Consensus 166 ~ga----r~~----------------~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIH 225 (464)
T COG0215 166 AGA----RVE----------------VDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIH 225 (464)
T ss_pred hcc----ccc----------------cccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCccee
Confidence 232 111 1111346689999997 389999999965 344557777787
Q ss_pred --cCCC----CCCHHHHHHHHHHcCCCC-Cc-EEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCC
Q 013441 266 --AEEH----LPNTLRQALIYKALGFSM-PY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWG 336 (443)
Q Consensus 266 --G~D~----l~ntp~q~~ly~aLg~~~-P~-f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~ 336 (443)
|.|+ +.|+..|.. .+.|-++ .. |.|..+ ++.+|+||||+.|+ ++|+++.++ |.|++++.||..-.+.
T Consensus 226 gGG~DLiFPHHENEiAQse--a~~g~~~~a~yWmH~G~-l~i~geKMSKSLGNfiti~d~l~~-~~p~~lR~~lls~HYR 301 (464)
T COG0215 226 GGGSDLIFPHHENEIAQSE--AATGVKPFAKYWMHNGF-LNIDGEKMSKSLGNFITVRDLLKK-YDPEVLRLFLLSSHYR 301 (464)
T ss_pred cCcccccCCCcccHHHHHH--hhhCCCcceeEeEEcce-eeecCcCcccccCCeeEHHHHHhh-cCHHHHHHHHHHHHhC
Confidence 7775 578888875 5567333 44 557777 67799999999999 599999888 9999999999876665
Q ss_pred CC
Q 013441 337 DG 338 (443)
Q Consensus 337 ~~ 338 (443)
.+
T Consensus 302 ~p 303 (464)
T COG0215 302 SP 303 (464)
T ss_pred Cc
Confidence 43
No 33
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.82 E-value=4.6e-19 Score=187.08 Aligned_cols=239 Identities=18% Similarity=0.212 Sum_probs=164.2
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEEecCC----------Ccc-------------cCcHHHHHHHHH
Q 013441 61 APSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDT----------DLE-------------RSTKESEEAVLQ 112 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar-----~~gG~fiLRIEDT----------D~~-------------R~~~~~~~~I~~ 112 (443)
.|+++.++||||+|+++...+++| .+...|+..|.|+ |++ .-...+.+.+.+
T Consensus 28 GpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~~ 107 (481)
T PRK14534 28 GPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFD 107 (481)
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 488899999999999997766666 4667899999999 652 124678889999
Q ss_pred HHHHcCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee-----ecCCHHHHHHHHHHHHhCCCCCCCCCcCC
Q 013441 113 DLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTGKWA 187 (443)
Q Consensus 113 dL~wLGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr 187 (443)
+++.||+.++. |.| +.+++.+..++++++|+++|+||. +||... -+.|. ...
T Consensus 108 d~~~Lni~~~~-------~~p-~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~--------------~~~YG-~ls 164 (481)
T PRK14534 108 DCKKLNIVYPD-------KVL-VASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC--------------FKSYG-QMA 164 (481)
T ss_pred HHHHcCCCCCc-------eec-CccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc--------------ccchh-hhc
Confidence 99999999775 336 579999999999999999999996 444322 12352 222
Q ss_pred CCCHHHHHHHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec----------------CCccccchhh
Q 013441 188 TATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS----------------NGQPVYNFCV 251 (443)
Q Consensus 188 ~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs----------------DG~PtY~fA~ 251 (443)
..+.+++.. ..|. |+.++ -...+..||+|||. .|+|+||+.|
T Consensus 165 ~~~l~~l~~--~~~~----~v~~~----------------~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiEC 222 (481)
T PRK14534 165 GINLNDFKD--MSVS----RVEID----------------KSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLEC 222 (481)
T ss_pred CCCHHHHhh--hccC----cCCcc----------------cCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHH
Confidence 223333211 0122 11111 01235578888863 2889999999
Q ss_pred hhh-cccCCcceEEe--cCCCC----CCHHHHHHHHHHcCCCCCcE-EEeeceecCCCceecccCCC-CChHHHHHCCCC
Q 013441 252 TVD-DATMAISHVIR--AEEHL----PNTLRQALIYKALGFSMPYF-AHVSLILAPDRSKLSKRHGA-TSVGQFREMGYL 322 (443)
Q Consensus 252 vVD-D~~m~ITHVIR--G~D~l----~ntp~q~~ly~aLg~~~P~f-~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~ 322 (443)
++- ....|-|..|. |.|++ .|.+.|.. .+.|.+.+.+ .|..++ ..+|+|||||.|+ ++++++.++|+.
T Consensus 223 sam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~--a~~g~~~~~~W~H~g~l-~~~g~KMSKSlGN~i~l~dll~~~~~ 299 (481)
T PRK14534 223 AAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAE--CYLNKKWCDMFVHGEFL-IMEYEKMSKSNNNFITIKDLEDQGFS 299 (481)
T ss_pred HHHHHHHcCCcceEEecccccCCCcchhHHHHHh--hhcCCCcceEEEEecEE-EecCceecccCCCcccHHHHHhcCCC
Confidence 753 23335555666 77764 68888864 2347776755 466664 4588999999998 699999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCcccCHHHHH
Q 013441 323 PQAMVNYLALLGWGDGTENEFFTLKQLV 350 (443)
Q Consensus 323 peai~n~l~~LG~~~~~~~e~~s~~eli 350 (443)
|++++.|+....... +-.||.+.|.
T Consensus 300 ~~alR~~lls~~yr~---~l~Fs~e~l~ 324 (481)
T PRK14534 300 PLDFRYFCLTAHYRT---QLKFTFNNLK 324 (481)
T ss_pred hhHHHHHHHhCCCCC---CCCCCHHHHH
Confidence 999998865544332 2346666553
No 34
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.82 E-value=2.5e-19 Score=184.70 Aligned_cols=245 Identities=19% Similarity=0.158 Sum_probs=162.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cCcHHHHHHHHHHHHHcCC-CC
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE-------------RSTKESEEAVLQDLSWLGL-DW 121 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~~-------------R~~~~~~~~I~~dL~wLGl-~w 121 (443)
.|+|.|++||||+|+++...+++|. +...|+..|+|.|.+ .-.+.+++.+.++++.||| .+
T Consensus 16 GpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~ 95 (384)
T PRK12418 16 GITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLPP 95 (384)
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4899999999999999987777763 567899999999874 1246788899999999997 67
Q ss_pred CCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHH---HHH-HHHHHHHhCCCCCCCCCcCCCCCHHHHHHH
Q 013441 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNE---ELE-KMKEIAKLKQLPPVYTGKWATATDAEVQKE 197 (443)
Q Consensus 122 Degp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e---el~-~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~ 197 (443)
|.. .+.|+..+..++++++|+++|+||.-- .. .+- ..+ .-+.| |...+...+++...
T Consensus 96 ~~~---------~raTe~i~~~~~~i~~L~~kG~aY~~~--~~~~~~VYFdv~-------~~~~Y-G~ls~~~~~~~~~~ 156 (384)
T PRK12418 96 RDY---------VGAVESIPEVVELVEKLLASGAAYVVD--DEEYPDVYFSVD-------ATPQF-GYESGYDRATMLEL 156 (384)
T ss_pred Ccc---------ccCCCCHHHHHHHHHHHHHCCCEEEeC--CCCCccEEEecC-------chhhc-ccccCCCHHHHHhh
Confidence 654 478999999999999999999999521 00 010 000 01234 33333334433211
Q ss_pred HhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------------CCccccchhhhh-hcccCCcceE
Q 013441 198 LERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV-DDATMAISHV 263 (443)
Q Consensus 198 ~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------------DG~PtY~fA~vV-DD~~m~ITHV 263 (443)
+ +. | .+..+ .....+..||+|||+ .|.|.||+.|++ -....|-+-.
T Consensus 157 -~-~~----~-------~~~~~-------~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~D 216 (384)
T PRK12418 157 -F-AE----R-------GGDPD-------RPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFD 216 (384)
T ss_pred -h-cc----c-------ccCcc-------cccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcc
Confidence 0 11 0 00000 012345689999996 489999999965 2334455556
Q ss_pred Ee--cCCCC----CCHHHHHHHHHHcCC-CCCcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCC
Q 013441 264 IR--AEEHL----PNTLRQALIYKALGF-SMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGW 335 (443)
Q Consensus 264 IR--G~D~l----~ntp~q~~ly~aLg~-~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~ 335 (443)
|+ |.|++ .|+..|.. .++|- +.+.++-+..+++.+|+||||+.|+ +++.++.+.|+.|++++.|+..-.+
T Consensus 217 IH~GG~DL~FPHHeneiaq~~--a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~y 294 (384)
T PRK12418 217 IQGGGSDLIFPHHEFSAAHAE--AATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHY 294 (384)
T ss_pred cccCccccccchhHhHHHHHH--HhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCC
Confidence 77 67865 45555553 23565 4555554444578899999999998 6899998889999999988853333
Q ss_pred CCCCCCcccCHHHH
Q 013441 336 GDGTENEFFTLKQL 349 (443)
Q Consensus 336 ~~~~~~e~~s~~el 349 (443)
.. +-.||.+.+
T Consensus 295 r~---~l~fs~e~l 305 (384)
T PRK12418 295 RA---DREWTDAVL 305 (384)
T ss_pred CC---CcccCHHHH
Confidence 32 223555544
No 35
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.82 E-value=4.5e-19 Score=187.74 Aligned_cols=237 Identities=21% Similarity=0.274 Sum_probs=164.8
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEEecCC----------Ccc-------------cCcHHHHHHHHH
Q 013441 61 APSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDT----------DLE-------------RSTKESEEAVLQ 112 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar-----~~gG~fiLRIEDT----------D~~-------------R~~~~~~~~I~~ 112 (443)
.|++++++||||+|+++...+++| .+...|+..|.|+ |++ .-...+++.+.+
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~ 109 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR 109 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 589999999999999997766666 4567899999999 653 114678889999
Q ss_pred HHHHcCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee-----ecCCHHHHHHHHHHHHhCCCCCCCCCcCC
Q 013441 113 DLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTGKWA 187 (443)
Q Consensus 113 dL~wLGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr 187 (443)
+++.||+.++.- .| +.+++.+..++++++|+++|+||. +||... -+.| |...
T Consensus 110 d~~~Lni~~~~~-------~~-rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~--------------~~~Y-G~Ls 166 (490)
T PRK14536 110 DTARLNIERPSI-------VC-NATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT--------------FPSY-GSLA 166 (490)
T ss_pred HHHHcCCCCCce-------ec-CcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc--------------ccch-hhhc
Confidence 999999987542 24 679999999999999999999996 444421 1234 2222
Q ss_pred CCCHHHHHHHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec----------------CCccccchhh
Q 013441 188 TATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS----------------NGQPVYNFCV 251 (443)
Q Consensus 188 ~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs----------------DG~PtY~fA~ 251 (443)
..+.+++ ..|. |..+. -...+..||+|||. .|.|.||+.|
T Consensus 167 ~~~~~~l----~~g~----~v~~~----------------~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIEC 222 (490)
T PRK14536 167 SAAVEDL----QAGA----RIEHD----------------TNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIEC 222 (490)
T ss_pred CCCHHHh----hcCC----cCCCC----------------CCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHH
Confidence 3333332 2232 10000 01235578888763 2789999999
Q ss_pred hhh--cccCCcceEEe--cCCCC----CCHHHHHHHHHHcCCCCCcEE-EeeceecCCCceecccCCC-CChHHHHHCCC
Q 013441 252 TVD--DATMAISHVIR--AEEHL----PNTLRQALIYKALGFSMPYFA-HVSLILAPDRSKLSKRHGA-TSVGQFREMGY 321 (443)
Q Consensus 252 vVD--D~~m~ITHVIR--G~D~l----~ntp~q~~ly~aLg~~~P~f~-Hlplil~~dg~KLSKR~g~-~si~~~r~~G~ 321 (443)
++- .++ |-+-.|+ |.|++ .|.+.|.. .+.|.+.+.++ |..+ +..+|+|||||.|+ ++++++.+.|+
T Consensus 223 saMs~~~l-g~~~DIH~GG~DliFPHHeneiAqs~--a~~g~~~~~~w~h~g~-l~~~g~KMSKSlGN~itl~dll~~g~ 298 (490)
T PRK14536 223 SAMSMKYL-GEQCDIHIGGVDHIRVHHTNEIAQCE--AATGKPWVRYWLHHEF-LLMNKGKMSKSAGQFLTLSSLQEKGF 298 (490)
T ss_pred HHHHHHHc-CCceeEEeccccCCCcchhhHHHHHH--HhcCCCcceEEEEcCE-EeecCccccccCCCcccHHHHHhcCC
Confidence 752 333 4455566 77865 67777764 23477667655 5555 56789999999998 59999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCcccCHHHHHh
Q 013441 322 LPQAMVNYLALLGWGDGTENEFFTLKQLVE 351 (443)
Q Consensus 322 ~peai~n~l~~LG~~~~~~~e~~s~~eli~ 351 (443)
.|++++.|+..-.+.. +-.||.+.+.+
T Consensus 299 ~~~alR~~lls~~yr~---~l~Fs~e~l~~ 325 (490)
T PRK14536 299 QPLDYRFFLLGGHYRS---QLAFSWEALKT 325 (490)
T ss_pred CHHHHHHHHHhCCCCC---CCCCCHHHHHH
Confidence 9999999887654433 33467666644
No 36
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.82 E-value=9.3e-20 Score=181.19 Aligned_cols=232 Identities=22% Similarity=0.313 Sum_probs=142.3
Q ss_pred CCCCCCcCChhhHHHHHHH-----HHHHHHcCCeEEEEecCCCcc---c----------CcHHHHHHHHHHHHHcCCCCC
Q 013441 61 APSPTGNLHVGGARTALFN-----YLFARSKGGKFVLRIEDTDLE---R----------STKESEEAVLQDLSWLGLDWD 122 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n-----~l~Ar~~gG~fiLRIEDTD~~---R----------~~~~~~~~I~~dL~wLGl~wD 122 (443)
.|+++.+.||||+|++++- ||-...+..+++..|.|+|.+ | -...+++.+++|+++||+.+.
T Consensus 15 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p 94 (300)
T PF01406_consen 15 GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP 94 (300)
T ss_dssp EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3899999999999999954 555556788999999999964 1 146789999999999999863
Q ss_pred CCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCC
Q 013441 123 EGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGT 202 (443)
Q Consensus 123 egp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~ 202 (443)
.- --+.||.++.+.+++++|+++|+||.--- ..+.-. -..-+.| |.-.+.+.+++.. |.
T Consensus 95 ~~--------~prate~i~~ii~~i~~Li~~G~AY~~~~--g~VYFd------v~~~~~Y-G~Ls~~~~~~l~~----~~ 153 (300)
T PF01406_consen 95 DH--------YPRATEHIPEIIELIEKLIDKGHAYESED--GSVYFD------VSKFPDY-GKLSNQDLEDLEA----GA 153 (300)
T ss_dssp SE--------EEEGGGGHHHHHHHHHHHHHTTSEEEETT--SEEEE-------CCGSTTT-TTTTT-SHHHHHH----CH
T ss_pred cc--------ccchhccHHHHHHHHHHHHHCCCeEEcCC--CcEEEe------ecccccc-ccccccchhhHHh----hh
Confidence 31 23899999999999999999999997410 000000 0001234 2222223333321 21
Q ss_pred CceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------------CCccccchhhhh-hcccCCcceEEe--c
Q 013441 203 PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV-DDATMAISHVIR--A 266 (443)
Q Consensus 203 ~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------------DG~PtY~fA~vV-DD~~m~ITHVIR--G 266 (443)
. + .+........||+|||. .|.|.||+.|++ -....|-+-.|. |
T Consensus 154 ~------~--------------~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG 213 (300)
T PF01406_consen 154 R------V--------------EVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGG 213 (300)
T ss_dssp H------H--------------TT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred h------c--------------ccccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccc
Confidence 0 0 01112346789999997 378999999965 333346666676 8
Q ss_pred CCCC----CCHHHHHHHHHHcCCCCCc-EEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCC
Q 013441 267 EEHL----PNTLRQALIYKALGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGD 337 (443)
Q Consensus 267 ~D~l----~ntp~q~~ly~aLg~~~P~-f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~ 337 (443)
.|++ .|...|.. .+.|-+... |.|..+| ..+|+||||+.|+ ++|+++.+. |.|++++.++..-.++.
T Consensus 214 ~DL~FPHHENEiAqs~--a~~g~~~a~~W~H~g~l-~~~g~KMSKSlgN~~~i~dll~~-~~~~~lR~~~l~~hYr~ 286 (300)
T PF01406_consen 214 IDLIFPHHENEIAQSE--AATGKPFANYWMHNGHL-NVDGEKMSKSLGNFITIRDLLKK-YSPDALRLFLLSTHYRK 286 (300)
T ss_dssp GGGTTTHHHHHHHHHH--HHHSS-SEEEEEEE--E-EETTCE--TTTT---BHHHHHTT-S-HHHHHHHHHTS-TTS
T ss_pred cccCCCCccchHHHHH--HhhCchHHHHHHHHHHH-hhcCccccccCCCEEEHHHHhhc-CCHHHHHHHHhcCCCCC
Confidence 8986 45555543 233644444 5688774 5589999999998 589999876 99999998886655543
No 37
>PLN02946 cysteine-tRNA ligase
Probab=99.80 E-value=4.4e-19 Score=189.90 Aligned_cols=225 Identities=22% Similarity=0.282 Sum_probs=159.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEEecCCCcc---c----------CcHHHHHHHHHHHHHcCCCCC
Q 013441 61 APSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDLE---R----------STKESEEAVLQDLSWLGLDWD 122 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---R----------~~~~~~~~I~~dL~wLGl~wD 122 (443)
.|+++|++||||+|+++...+++| .+...|+..|+|+|.+ | -...+++.+.+|++.||+...
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 689999999999999997777666 4678899999999964 1 246788999999999999743
Q ss_pred CCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee-----ecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHH
Q 013441 123 EGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKE 197 (443)
Q Consensus 123 egp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~ 197 (443)
.. --+.|++.+..++++++|+++|+||. +||... -+.| |.-.+.+.++
T Consensus 167 ~~--------~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~--------------f~~Y-G~Ls~~~l~~---- 219 (557)
T PLN02946 167 SV--------EPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK--------------FPEY-GKLSGRKLED---- 219 (557)
T ss_pred Ce--------ecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc--------------chhh-hhcCCCChhH----
Confidence 21 12688999999999999999999996 343321 1234 2211222222
Q ss_pred HhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------------CCccccchhhhh-hcccCCcceE
Q 013441 198 LERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV-DDATMAISHV 263 (443)
Q Consensus 198 ~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------------DG~PtY~fA~vV-DD~~m~ITHV 263 (443)
+..|.. ..+ .-...+..||+|||+ .|.|.||+.|++ -....|-+..
T Consensus 220 l~~g~r----v~~----------------~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~D 279 (557)
T PLN02946 220 NRAGER----VAV----------------DSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFD 279 (557)
T ss_pred hhcCCC----CCc----------------ccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCee
Confidence 222321 000 012345689999996 488999999965 2334466666
Q ss_pred Ee--cCCCC----CCHHHHHHHHHHcCCCCC-cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCC
Q 013441 264 IR--AEEHL----PNTLRQALIYKALGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGW 335 (443)
Q Consensus 264 IR--G~D~l----~ntp~q~~ly~aLg~~~P-~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~ 335 (443)
|+ |.|++ .|.-.|.. .+.|.+.- .|.|..+|. .+|+|||||.|+ ++++++.++ |.|++++.|+..-.+
T Consensus 280 IH~GG~DL~FPHHENEiAQse--a~~g~~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~-y~~dalR~~lLs~hy 355 (557)
T PLN02946 280 IHGGGMDLVFPHHENEIAQSC--AACCDSNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDL-YHPLALRLFLLGTHY 355 (557)
T ss_pred EeccccccCCCcccchHHHHH--HHhCCCCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHh-cCccceeeeeeccCC
Confidence 77 77754 67777764 23565443 467888865 799999999998 589999886 999999998876554
Q ss_pred C
Q 013441 336 G 336 (443)
Q Consensus 336 ~ 336 (443)
.
T Consensus 356 r 356 (557)
T PLN02946 356 R 356 (557)
T ss_pred C
Confidence 4
No 38
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.80 E-value=9.2e-19 Score=181.60 Aligned_cols=230 Identities=19% Similarity=0.183 Sum_probs=157.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEEecCCCcc---c----------CcHHHHHHHHHHHHHcCCC-C
Q 013441 61 APSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDLE---R----------STKESEEAVLQDLSWLGLD-W 121 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---R----------~~~~~~~~I~~dL~wLGl~-w 121 (443)
.|+|++++||||+|+++...+++| .+...|+..|+|.|.+ + -.+.+++.+.++++.||+. +
T Consensus 43 GpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~ 122 (411)
T TIGR03447 43 GITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPP 122 (411)
T ss_pred CCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 588999999999999998777776 4678899999999874 1 1367888999999999976 6
Q ss_pred CCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHH----HHH-HHHHHHHhCCCCCCCCCcCCCCCHHHHHH
Q 013441 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNE----ELE-KMKEIAKLKQLPPVYTGKWATATDAEVQK 196 (443)
Q Consensus 122 Degp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e----el~-~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~ 196 (443)
|.. .+.|+..+..++++++|+++|+||.-- . .+- ..+ .-+.| |.-.+...+++.+
T Consensus 123 d~~---------~RaTe~i~~ii~~i~~L~~kG~aY~~~---~~~~~~VYFdv~-------~~~~Y-G~Ls~~~~~~~~~ 182 (411)
T TIGR03447 123 RDY---------IGAVESIDEVIEMVEKLLAAGAAYEVE---GPEYPDVYFSIE-------ATEQF-GYESGYDRATMLE 182 (411)
T ss_pred Ccc---------cCCCCCHHHHHHHHHHHHHCCCEEecC---CCCcCcEEEecc-------chhcc-ccccCCCHHHHHh
Confidence 653 478999999999999999999999521 0 010 000 01224 2222233333321
Q ss_pred HHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------------CCccccchhhhh-hcccCCcce
Q 013441 197 ELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV-DDATMAISH 262 (443)
Q Consensus 197 ~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------------DG~PtY~fA~vV-DD~~m~ITH 262 (443)
.. +. | .+..+| ....+..||+|||+ .|.|.||+.|++ -....|-+-
T Consensus 183 ~~--~~----~-------~~~~~~-------~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~ 242 (411)
T TIGR03447 183 LF--AE----R-------GGDPDR-------PGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGF 242 (411)
T ss_pred hh--cc----c-------ccCccc-------ccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCce
Confidence 00 11 0 000000 11345689999996 489999999965 445557777
Q ss_pred EEe--cCCCCC----CHHHHHHHHHHcCC-CCCcEE-EeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHh
Q 013441 263 VIR--AEEHLP----NTLRQALIYKALGF-SMPYFA-HVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 263 VIR--G~D~l~----ntp~q~~ly~aLg~-~~P~f~-Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~L 333 (443)
.|+ |.|++. |.-.|.. .++|- +.+.++ |..+ ++.+|+||||+.|+ ++++++.+.|+.|++++.|+..-
T Consensus 243 Dih~GG~DLifpHheneiaq~~--A~~g~~~~~~~w~H~g~-l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~ 319 (411)
T TIGR03447 243 DIQGGGSDLIFPHHEFSAAHAE--AATGVRRMARHYVHAGM-IGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAG 319 (411)
T ss_pred ecccCcccccccchHhHHHHHH--HhcCCCCcceEEEECCE-ECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecC
Confidence 888 888764 4444442 23565 556555 5554 78899999999998 58999988899999999988533
No 39
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.77 E-value=1.5e-17 Score=180.00 Aligned_cols=224 Identities=21% Similarity=0.308 Sum_probs=158.8
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEEecCCCcc---c----------CcHHHHHHHHHHHHHcCCCCC
Q 013441 61 APSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDLE---R----------STKESEEAVLQDLSWLGLDWD 122 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---R----------~~~~~~~~I~~dL~wLGl~wD 122 (443)
.|++++++||||+|+++...+++| .+...|+..|+|+|.+ + -.+.+++.+.++++.|||..+
T Consensus 255 GPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p 334 (699)
T PRK14535 255 GMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRP 334 (699)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 588889999999999997777666 4568899999999974 1 136788999999999999876
Q ss_pred CCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee------ecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH
Q 013441 123 EGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR------CFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK 196 (443)
Q Consensus 123 egp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~------Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~ 196 (443)
.- .| +.|++.+...+++++|+++|+||. +||... -+.| |...+.+.+++
T Consensus 335 ~~-------~p-raTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~--------------f~~Y-G~LS~~~~~~l-- 389 (699)
T PRK14535 335 DI-------EP-KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE--------------FAAY-GQLSGKSLDDL-- 389 (699)
T ss_pred cE-------ee-CccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc--------------cccc-ccccCCChHHh--
Confidence 52 23 578999999999999999999994 344331 1335 22222333322
Q ss_pred HHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------------CCccccchhhhhh-cccCCcce
Q 013441 197 ELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTVD-DATMAISH 262 (443)
Q Consensus 197 ~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------------DG~PtY~fA~vVD-D~~m~ITH 262 (443)
..|.. ..+ | -...+..||+|||+ .|.|.||+.|++- ....|-+-
T Consensus 390 --~~g~r----ve~---------d-------~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~ 447 (699)
T PRK14535 390 --RAGER----VEV---------D-------GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTF 447 (699)
T ss_pred --cCCCc----ccc---------c-------cccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcc
Confidence 22321 000 0 01235689999996 3889999999653 34446666
Q ss_pred EEe--cCCC----CCCHHHHHHHHHHcCCC-------------C-C---cEEEeeceecCCCceecccCCC-CChHHHHH
Q 013441 263 VIR--AEEH----LPNTLRQALIYKALGFS-------------M-P---YFAHVSLILAPDRSKLSKRHGA-TSVGQFRE 318 (443)
Q Consensus 263 VIR--G~D~----l~ntp~q~~ly~aLg~~-------------~-P---~f~Hlplil~~dg~KLSKR~g~-~si~~~r~ 318 (443)
.|+ |.|+ +.|...|.. .+.|.+ + | .|.|..+|. .+|+||||+.|+ +++.++.+
T Consensus 448 DIHgGG~DLiFPHHENEiAQse--A~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSKSLGN~it~~dlLe 524 (699)
T PRK14535 448 DIHGGGADLQFPHHENEIAQSV--GATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSKSLGNFFTIREVLK 524 (699)
T ss_pred eeECCccccCCCCCccHHHHHH--HhhCCCcccccccccccccccccccEEEECCeEe-eCCCccCCCCCCcCCHHHHHH
Confidence 676 7775 478877764 224542 1 1 477888865 799999999998 58999988
Q ss_pred CCCCHHHHHHHHHHhCC
Q 013441 319 MGYLPQAMVNYLALLGW 335 (443)
Q Consensus 319 ~G~~peai~n~l~~LG~ 335 (443)
. |.|++++.|+..-.+
T Consensus 525 ~-ygpdalRl~lLsshY 540 (699)
T PRK14535 525 Q-YDPEVVRFFILRAHY 540 (699)
T ss_pred h-CCHHHHHHHHHcCCC
Confidence 6 999999998876443
No 40
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.67 E-value=1.3e-15 Score=166.95 Aligned_cols=241 Identities=20% Similarity=0.265 Sum_probs=157.6
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHH------HcCCeEEEEecCCCcc---c-----------CcHHHHHHHHHHHHHcCCC
Q 013441 61 APSPTGNLHVGGARTALFNYLFAR------SKGGKFVLRIEDTDLE---R-----------STKESEEAVLQDLSWLGLD 120 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar------~~gG~fiLRIEDTD~~---R-----------~~~~~~~~I~~dL~wLGl~ 120 (443)
.|+++++.||||+||++...+++| .+...|+..|+|+|.+ | -...+++.+.+|++.|||.
T Consensus 67 GPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~ 146 (651)
T PTZ00399 67 GPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVR 146 (651)
T ss_pred CCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 477789999999999997665555 4568899999999974 1 1257888999999999998
Q ss_pred CCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee-----ecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHH-
Q 013441 121 WDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEV- 194 (443)
Q Consensus 121 wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~- 194 (443)
++.- -| +.|++.+...+++++|+++|+||. .|+...- .. . ...|. .|+++..
T Consensus 147 ~p~~-------~~-r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f----~~----~--~~~Yg----~L~p~~~~ 204 (651)
T PTZ00399 147 PPDV-------IT-RVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAF----RK----A--GHVYP----KLEPESVA 204 (651)
T ss_pred CCcc-------cc-CcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhc----cc----c--hhhHH----hhChhhcC
Confidence 6542 13 459999999999999999999996 2222110 00 0 01231 1322110
Q ss_pred -HHHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------------CCccccchhhhh--hcccC
Q 013441 195 -QKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV--DDATM 258 (443)
Q Consensus 195 -~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------------DG~PtY~fA~vV--DD~~m 258 (443)
...+..|.. .+ .| +.....+..||+||+. .|.|.||..|.+ .|++
T Consensus 205 ~~~~~~~g~~-----------~l--~~-----~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~l- 265 (651)
T PTZ00399 205 DEDRIAEGEG-----------AL--GK-----VSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNIL- 265 (651)
T ss_pred CHHHHhcccC-----------Cc--cc-----cCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHc-
Confidence 001111210 00 00 0001233467777775 389999997754 3554
Q ss_pred CcceEEe--cCCC----CCCHHHHHHHHHHcCC-CCC-cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHH
Q 013441 259 AISHVIR--AEEH----LPNTLRQALIYKALGF-SMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNY 329 (443)
Q Consensus 259 ~ITHVIR--G~D~----l~ntp~q~~ly~aLg~-~~P-~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~ 329 (443)
|-+-.|+ |.|+ +.|.-.|.. -++|- +.+ .|.|... +..+|+|||||.|+ ++++++.+. |.|++++.|
T Consensus 266 g~~~DIh~gG~DL~FPHHeNEiAQse--A~~~~~~~v~y~~H~G~-L~i~G~KMSKSLGNfItp~dlLek-ygaDaLR~~ 341 (651)
T PTZ00399 266 GDPIDIHSGGIDLKFPHHDNELAQSE--AYFDKHQWVNYFLHSGH-LHIKGLKMSKSLKNFITIRQALSK-YTARQIRLL 341 (651)
T ss_pred CCcceeeccCCCCCCCcchhHHHHHH--HhhCCCCCCcEEEEEEE-EEeccchhhhcCCCcccHHHHHHH-cChHHHHHH
Confidence 5566676 7776 467777764 22454 344 4667787 56799999999998 699999988 999999998
Q ss_pred HHHhCCCCCCCCcccCHHHH
Q 013441 330 LALLGWGDGTENEFFTLKQL 349 (443)
Q Consensus 330 l~~LG~~~~~~~e~~s~~el 349 (443)
+..-.|..+ -.|+.+.+
T Consensus 342 lLs~~~~~d---ldFS~e~l 358 (651)
T PTZ00399 342 FLLHKWDKP---MNYSDESM 358 (651)
T ss_pred HHhcCCCCC---CccCHHHH
Confidence 875555432 23555554
No 41
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.66 E-value=2.1e-16 Score=141.50 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=58.4
Q ss_pred cchhhhhhcccCCc---ceEEecCCCCCCHHHHHHHHHHcCCC-CCcEEEeeceecCCCceecccC
Q 013441 247 YNFCVTVDDATMAI---SHVIRAEEHLPNTLRQALIYKALGFS-MPYFAHVSLILAPDRSKLSKRH 308 (443)
Q Consensus 247 Y~fA~vVDD~~m~I---THVIRG~D~l~ntp~q~~ly~aLg~~-~P~f~Hlplil~~dg~KLSKR~ 308 (443)
|++.+++|+...++ |++++|.|+..+...+..+.+++|+. .|.+.|.++|...+|+|||||+
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCCCcCCCCC
Confidence 99999999999999 99999999999999999999999876 6899999999999999999985
No 42
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.2e-15 Score=160.39 Aligned_cols=263 Identities=24% Similarity=0.333 Sum_probs=172.7
Q ss_pred eCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHcCCCC
Q 013441 60 FAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWLGLDW 121 (443)
Q Consensus 60 FAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~----------------~R~~~~~~~~I~~dL~wLGl~w 121 (443)
=-|.|+|.+||||++|.|....+||. ..|.=++-+..||. +.-++++.+.+.++++||+|.+
T Consensus 12 alpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~Isf 91 (558)
T COG0143 12 ALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISF 91 (558)
T ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34999999999999999999999995 57888888899984 1234677788999999999999
Q ss_pred CCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee-----ecCCHHHHHHHHHHHHhCCCCCCC-CCc----------
Q 013441 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVY-TGK---------- 185 (443)
Q Consensus 122 Degp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y-~g~---------- 185 (443)
|. |+....+++.+.-+++.++|.++|..|. =||.+.+. ..|.+| .|+
T Consensus 92 D~-------F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~----------fl~dr~v~g~cp~cg~~~ar 154 (558)
T COG0143 92 DN-------FIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCER----------FLPDRYVEGTCPKCGGEDAR 154 (558)
T ss_pred cc-------cccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccc----------cccchheeccCCCcCccccC
Confidence 97 4455666788899999999999999986 33433332 222222 222
Q ss_pred ------C-CCCCHHHHHHHH--hcCCCceEE------EecCCCCceeeeecccceee-----------------ecCCCC
Q 013441 186 ------W-ATATDAEVQKEL--ERGTPYTYR------FRVPKGGSLKISDLIRGEVS-----------------WNLDTL 233 (443)
Q Consensus 186 ------c-r~ls~~e~~~~~--~~g~~~~iR------~k~~~~~~~~~~D~v~G~i~-----------------~~~~~~ 233 (443)
| +.+++.++.... .+|..+.+| |+++. |+|.+..-+. |-...+
T Consensus 155 GD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~-----~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL 229 (558)
T COG0143 155 GDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSK-----FQDKLLEWYESNPDFIWPANRRNEVLNFLKEGL 229 (558)
T ss_pred cchhhhccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHH-----hHHHHHHHHHhCccccCChHHHHHHHHHHHccC
Confidence 2 245555532211 233333332 55542 4443332211 111458
Q ss_pred CCeEEEecCC-----------ccccc--------------hh-----hhh-----hcccCCcceEEecCCCCCCHHHHHH
Q 013441 234 GDFVIMRSNG-----------QPVYN--------------FC-----VTV-----DDATMAISHVIRAEEHLPNTLRQAL 278 (443)
Q Consensus 234 ~D~VL~RsDG-----------~PtY~--------------fA-----~vV-----DD~~m~ITHVIRG~D~l~ntp~q~~ 278 (443)
.|.-|.|.+. ...|- ++ ..- +| .-.+-|+|-.+ +++.|..
T Consensus 230 ~d~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~-~~e~vhfIGKD----ii~FHav 304 (558)
T COG0143 230 KDLSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD-DTELVHFIGKD----IIRFHAV 304 (558)
T ss_pred cccceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC-CceEEEEeccc----cCcchhh
Confidence 8999999541 11221 11 000 12 34566887544 6788887
Q ss_pred HHHHc----CCCCCcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhc
Q 013441 279 IYKAL----GFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEK 352 (443)
Q Consensus 279 ly~aL----g~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~ 352 (443)
++.|+ |.+.|.-.+..-.+..+|+||||+.|+ +...++.+. |.++++|.||+.-. +.+++-.||++++++.
T Consensus 305 ~wPamL~~~~~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~-~~~D~lRYyL~~~~--p~~~D~dFs~~~f~~r 380 (558)
T COG0143 305 YWPAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGVDALRYYLAREL--PEGSDGDFSWEDFVER 380 (558)
T ss_pred HHHHHHHhCCCCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHH-cCchHhHHHHHHhC--CCCCCCCCCHHHHHHH
Confidence 77664 777885443332234478899999998 688888888 99999999998753 2345567999998764
No 43
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=99.57 E-value=5e-14 Score=140.31 Aligned_cols=192 Identities=18% Similarity=0.223 Sum_probs=137.7
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCC-------CcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcee
Q 013441 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT-------DLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~ 135 (443)
.|||.|||||+.+|+.+|...+..|.+.++.|.|. +..+...++...+..++.++|++|+... .|.
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~-------i~~ 79 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKST-------IFF 79 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCE-------EEE
Confidence 58999999999999999999999999999999996 4567778888999999999999998753 688
Q ss_pred ccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCc
Q 013441 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGS 215 (443)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 215 (443)
||+..+.|.- ...+.|.||..+++++ ..|.. +...+. .
T Consensus 80 qS~~~~~~~l--------~~~l~~~~~~~~l~r~----------~~fk~------------~~~~~~------------~ 117 (280)
T cd00806 80 QSDVPEHYEL--------AWLLSCVVTFGELERM----------TGFKD------------KSAQGE------------S 117 (280)
T ss_pred cCCcHHHHHH--------HHHHhCcCCHHHHHhc----------cchhh------------hhccCC------------C
Confidence 9998854432 2347899999988643 22310 000000 0
Q ss_pred eeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC------CCCCc
Q 013441 216 LKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMPY 289 (443)
Q Consensus 216 ~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg------~~~P~ 289 (443)
.-.|.+ +|-.--+.|=...+.++|..|.|...+...-..+.+.|+ ++.|.
T Consensus 118 -----~~~g~~-------------------~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~ 173 (280)
T cd00806 118 -----VNIGLL-------------------TYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPA 173 (280)
T ss_pred -----Ccchhh-------------------cchHHHHhhhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCe
Confidence 011222 222222222223355889999999877666677788898 78999
Q ss_pred EEEe--eceecCCCc--eecccCCC--CChHHHHHCCCCHHHHHHHHHHh
Q 013441 290 FAHV--SLILAPDRS--KLSKRHGA--TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 290 f~Hl--plil~~dg~--KLSKR~g~--~si~~~r~~G~~peai~n~l~~L 333 (443)
..|. ++|.+.+|. ||||+.+. ..+.+ .|+.|...+...
T Consensus 174 ~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d------~~~~i~~KI~~a 217 (280)
T cd00806 174 ALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD------SPKEIKKKIMKA 217 (280)
T ss_pred eeccCCCccccCCCCCCcccCCCCCCeEEeeC------CHHHHHHHHHhc
Confidence 9888 999998874 99999983 34432 788888887654
No 44
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.56 E-value=3.5e-14 Score=151.50 Aligned_cols=258 Identities=17% Similarity=0.175 Sum_probs=147.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cCcHHHHHHHHHHHHHcCCCCC
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE-------------RSTKESEEAVLQDLSWLGLDWD 122 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~~-------------R~~~~~~~~I~~dL~wLGl~wD 122 (443)
.|+|||.+||||+|+.+...+++|. +...|+.-+||.|.+ .-...+.+.|.++|+.|||++|
T Consensus 9 ~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 9 IYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 4899999999999999988888874 345577777776642 2246788899999999999999
Q ss_pred CCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee-----ecC-------CHHHHHHHHHHHHhCCCCCCCCCcCC---
Q 013441 123 EGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFC-------SNEELEKMKEIAKLKQLPPVYTGKWA--- 187 (443)
Q Consensus 123 egp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfc-------s~eel~~~r~~~~~~~~~~~Y~g~cr--- 187 (443)
..+ .-.+.++.+..+++.++|.++|++|. .|| +..+|.. +. .++-.|.
T Consensus 89 ~~~-------~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~--------~~--p~~~~~~~~~ 151 (511)
T PRK11893 89 DFI-------RTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIE--------DG--YRCPPTGAPV 151 (511)
T ss_pred Cce-------eCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcC--------CC--CCCCCCCCcc
Confidence 632 11233478899999999999999997 333 3333211 00 1222221
Q ss_pred ----------CCCH--HHHHHHHhcCCCceEEEecCCCCceeeeeccccee-eecCCCCCCeEEEecCC---c--ccc--
Q 013441 188 ----------TATD--AEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEV-SWNLDTLGDFVIMRSNG---Q--PVY-- 247 (443)
Q Consensus 188 ----------~ls~--~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i-~~~~~~~~D~VL~RsDG---~--PtY-- 247 (443)
.++. +++.+...++.. +. .| +..+..+ .+-...+.|+.|.|.+. . |.+
T Consensus 152 ~~~~~~~~f~~l~~~~~~l~~~~~~~~~---~~-~p--------~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~ 219 (511)
T PRK11893 152 EWVEEESYFFRLSKYQDKLLELYEANPD---FI-QP--------ASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPK 219 (511)
T ss_pred eEEecCeEEEEcHHHHHHHHHHHHhCCC---cc-CC--------HHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCC
Confidence 1111 112221111000 00 00 0000000 01112467888888332 1 221
Q ss_pred ----c--------hhh-------hh--hccc--CCcceEEecCCCCCC-HHHHHHHHHHcCCCCCc-EEEeeceecCCCc
Q 013441 248 ----N--------FCV-------TV--DDAT--MAISHVIRAEEHLPN-TLRQALIYKALGFSMPY-FAHVSLILAPDRS 302 (443)
Q Consensus 248 ----~--------fA~-------vV--DD~~--m~ITHVIRG~D~l~n-tp~q~~ly~aLg~~~P~-f~Hlplil~~dg~ 302 (443)
- ++. .. ++.. ...+-.+-|.|++.. +.....+..++|.+.|. +.|..+++. +|+
T Consensus 220 ~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~~-~G~ 298 (511)
T PRK11893 220 HVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTL-DGE 298 (511)
T ss_pred ceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHhCCCCCCCEEEeeccEEE-CCe
Confidence 1 111 00 0110 011213347777642 11122333456878884 556677665 899
Q ss_pred eecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHh
Q 013441 303 KLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVE 351 (443)
Q Consensus 303 KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~ 351 (443)
|||||.|+ +++.++.+. |.+++++.|++..+- ...+-.|+.+.+.+
T Consensus 299 KMSKS~GN~i~~~dll~~-~g~DalR~~ll~~~~--~~~d~~Fs~~~~~~ 345 (511)
T PRK11893 299 KMSKSLGNVIDPFDLVDE-YGVDAVRYFLLREIP--FGQDGDFSREAFIN 345 (511)
T ss_pred eecccCCcEEcHHHHHHH-cCcHHHHHHHHhcCC--CCcCCCCCHHHHHH
Confidence 99999998 588888887 899999999987742 12233477666643
No 45
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.54 E-value=3.2e-13 Score=135.96 Aligned_cols=235 Identities=23% Similarity=0.293 Sum_probs=134.8
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH--cCCe---EEEEecCCCcc------c--------------------CcHHHHHH
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS--KGGK---FVLRIEDTDLE------R--------------------STKESEEA 109 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~---fiLRIEDTD~~------R--------------------~~~~~~~~ 109 (443)
.|+|||.+||||+++.+...+++|. ..|. |+.-+||.+.+ + -.+++.+.
T Consensus 8 pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T cd00668 8 PPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGE 87 (312)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998877777764 3444 55555553321 1 12567789
Q ss_pred HHHHHHHcCCCCC--CCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCC
Q 013441 110 VLQDLSWLGLDWD--EGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWA 187 (443)
Q Consensus 110 I~~dL~wLGl~wD--egp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr 187 (443)
|.++|+.||+..| ..- .....++.+..++++++|.++|++|.-.- .. + .. ..| +.
T Consensus 88 ~~~~l~~lgI~~Dw~~~~-------~T~~~~~~~~v~~~f~~L~~~G~iY~~~~---~v---~------~~-~~~---f~ 144 (312)
T cd00668 88 HKEDFRRLGISYDWSDEY-------ITTEPEYSKAVELIFSRLYEKGLIYRGTH---PV---R------IT-EQW---FF 144 (312)
T ss_pred HHHHHHHhCccccCCCCe-------ECCCHHHHHHHHHHHHHHHHCCCEEeecc---ee---E------ee-eeE---EE
Confidence 9999999999655 421 11233567888999999999999997210 00 0 00 000 11
Q ss_pred CCC--HHHHHHHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecC----Cccccchhhhhh-------
Q 013441 188 TAT--DAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSN----GQPVYNFCVTVD------- 254 (443)
Q Consensus 188 ~ls--~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsD----G~PtY~fA~vVD------- 254 (443)
+++ .++..+.+..+. + .|+...-.+.+.+ ....|+.|.|.. |.|.+++-|=.|
T Consensus 145 ~~~~l~~~~~~~~~~~~---~---~p~~~~~~~~~~l--------~~~~d~~isR~~~WG~~~P~~~i~~Wfds~~~~~~ 210 (312)
T cd00668 145 DMPKFKEKLLKALRRGK---I---VPEHVKNRMEAWL--------ESLLDWAISRQRYWGTPLPEDVFDVWFDSGIGPLG 210 (312)
T ss_pred EcHHHHHHHHHHHhcCC---c---CChHHHHHHHHHH--------hCCCCeEEeccCCCCCcCCcccccchhhccHHHHH
Confidence 111 112222222221 0 1110000011111 122388888853 456677666111
Q ss_pred --cccC---------CcceEEecCCCCC-CHHHHHHHHHHcCCC-CC-c-EEEeeceecCCCceecccCCC-CChHHHHH
Q 013441 255 --DATM---------AISHVIRAEEHLP-NTLRQALIYKALGFS-MP-Y-FAHVSLILAPDRSKLSKRHGA-TSVGQFRE 318 (443)
Q Consensus 255 --D~~m---------~ITHVIRG~D~l~-ntp~q~~ly~aLg~~-~P-~-f~Hlplil~~dg~KLSKR~g~-~si~~~r~ 318 (443)
.... ...--+-|.|++. -...-.....+++.. +| . +.| .+++..+|+|||||.|+ ++++++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~ 289 (312)
T cd00668 211 SLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVE 289 (312)
T ss_pred HcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHH
Confidence 1110 1222233888762 222223334556644 44 3 345 88888787999999998 58899988
Q ss_pred CCCCHHHHHHHHHHhC
Q 013441 319 MGYLPQAMVNYLALLG 334 (443)
Q Consensus 319 ~G~~peai~n~l~~LG 334 (443)
+ +.++|++.|++..+
T Consensus 290 ~-~~~da~R~~l~~~~ 304 (312)
T cd00668 290 K-YGADALRYYLTSLA 304 (312)
T ss_pred H-cCcHHHHHHHHhcC
Confidence 8 89999999998764
No 46
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=4e-14 Score=146.95 Aligned_cols=232 Identities=24% Similarity=0.344 Sum_probs=155.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHH---H---HcCCeEEEEecCCCcc---cCc---------------HHHHHHHHHHHHH
Q 013441 61 APSPTGNLHVGGARTALFNYLFA---R---SKGGKFVLRIEDTDLE---RST---------------KESEEAVLQDLSW 116 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~A---r---~~gG~fiLRIEDTD~~---R~~---------------~~~~~~I~~dL~w 116 (443)
.|+.+..-|+||||+++-=.+.- + +++..|++.|.|+|.+ |.. ..+++....|+..
T Consensus 62 GpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~ 141 (586)
T KOG2007|consen 62 GPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEFLQDMAA 141 (586)
T ss_pred cCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 46677889999999998322222 2 5789999999999974 332 2367899999999
Q ss_pred cCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH
Q 013441 117 LGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK 196 (443)
Q Consensus 117 LGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~ 196 (443)
|.+-+..- ..+-|++.+....+++++|++|.||.- ...+.-- -.+.+..| |+| .. +. +
T Consensus 142 LnvLpPtv--------~tRVSeyvp~II~fIqkIIdnG~aY~~---dGsVYFd-----v~kf~~~Y-gKL---~G-~~-~ 199 (586)
T KOG2007|consen 142 LNVLPPTV--------QTRVSEYVPQIIKFIQKIIDNGYAYAV---DGSVYFD-----VDKFPHSY-GKL---VG-QR-K 199 (586)
T ss_pred hCCCCCcc--------cchhhhchHHHHHHHHHHHhCCceeee---CCcEEEe-----cccccchh-hhh---cC-ch-h
Confidence 99774321 347899999999999999999999974 1111000 00011123 222 10 00 1
Q ss_pred HHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------------CCccccchhhhh-hcccCCcce
Q 013441 197 ELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV-DDATMAISH 262 (443)
Q Consensus 197 ~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------------DG~PtY~fA~vV-DD~~m~ITH 262 (443)
.+..|+ +... | -......||+|||+ .|.|.||+.|.+ .-+..|-+.
T Consensus 200 ~~~~gE-----------g~l~--d-------s~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~l 259 (586)
T KOG2007|consen 200 NLQEGE-----------GVLS--D-------SRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQL 259 (586)
T ss_pred hcccCc-----------Cccc--c-------ccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhcccc
Confidence 111121 1111 1 11245689999997 489999999865 334557777
Q ss_pred EEe--cCC----CCCCHHHHHHHHHHcCCC--CCcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHh
Q 013441 263 VIR--AEE----HLPNTLRQALIYKALGFS--MPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 263 VIR--G~D----~l~ntp~q~~ly~aLg~~--~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~L 333 (443)
.|+ |.| |+.|...|..- ++.-+ .-.|.|..- +..+|.||||+.++ +||++..+. |+|.+++-++.+-
T Consensus 260 DIH~GG~DL~FPHHeNEiAQ~eA--~~~~~~wVnYflHtGh-L~i~g~KMSKSLkNFiTIke~Lk~-~sp~qLRl~fl~~ 335 (586)
T KOG2007|consen 260 DIHGGGIDLAFPHHENEIAQSEA--AFDDSQWVNYFLHTGH-LTINGEKMSKSLKNFITIKEALKK-YSPRQLRLAFLLH 335 (586)
T ss_pred ceecCcccccCCCcccHHHHHHH--HhcCCccceeEEEcCe-eeeccchhhhhhccceeHHHHHHh-cCHHHHHHHHHHH
Confidence 777 556 56898888753 23322 235778887 45578999999887 699998776 8999999999888
Q ss_pred CCCCC
Q 013441 334 GWGDG 338 (443)
Q Consensus 334 G~~~~ 338 (443)
-|..+
T Consensus 336 ~wr~~ 340 (586)
T KOG2007|consen 336 QWRSP 340 (586)
T ss_pred HhcCc
Confidence 88764
No 47
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.53 E-value=6.8e-13 Score=142.18 Aligned_cols=236 Identities=16% Similarity=0.172 Sum_probs=151.3
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcccCc--------------------------
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLERST-------------------------- 103 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~~R~~-------------------------- 103 (443)
++++-=+++|+|.+||||+++.+..+.++|. +...||.=-||.|+-|.+
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 4888888999999999999999988887774 456688888899864433
Q ss_pred ------HHHHHHHHHHHHHcCCCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHh
Q 013441 104 ------KESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175 (443)
Q Consensus 104 ------~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~ 175 (443)
+.+.+.+.+.|+.+||++|. +++++ +...|.+.+...+++ +++|.+.=..-..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~~d~----------~~~t~~y~~g~~~~~i~~~l~~---------~~~i~~il~~~~~ 164 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIEYEF----------ISATECYKSGRYDEAILTALEN---------RDEIMEILLPYLG 164 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCceEE----------EehhhhhccCchHHHHHHHHHh---------HHHHHHHHHHhcC
Confidence 34566778889999999874 67776 556777777776665 2333222111111
Q ss_pred CCCCCC------CCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceeeeec--ccceeeecCCCCCCeEEEecCCcccc
Q 013441 176 KQLPPV------YTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDL--IRGEVSWNLDTLGDFVIMRSNGQPVY 247 (443)
Q Consensus 176 ~~~~~~------Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~--v~G~i~~~~~~~~D~VL~RsDG~PtY 247 (443)
...+.. ++..|...+.- .++-+... .+++.|.+- -.|.+..... .-..-||-|= |
T Consensus 165 ~~~~~~~~P~~pic~~cg~~~~~-----------~~~~~d~~-~~~v~y~~~cG~~~~~~~~~g--~~KL~Wr~dW-~-- 227 (510)
T PRK00750 165 EERQATYSPFLPICPKCGKVLTT-----------PVISYDAE-AGTVTYDCECGHEGEVPVTGG--HGKLQWKVDW-P-- 227 (510)
T ss_pred CccCCCeeeeeeeCCCCCccceE-----------EEEEEeCC-CCEEEEEcCCCCEEEEecCCC--CcccCCCCCc-H--
Confidence 112222 23344332210 01111111 123333321 1111111110 0112233221 1
Q ss_pred chhhhhhcccCCcceEEecCCCCC-CHHHHHHHHH-HcCCCCCcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHH
Q 013441 248 NFCVTVDDATMAISHVIRAEEHLP-NTLRQALIYK-ALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQ 324 (443)
Q Consensus 248 ~fA~vVDD~~m~ITHVIRG~D~l~-ntp~q~~ly~-aLg~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~pe 324 (443)
.-.. ..+|+..+.|.||.. +......+.+ +||+++|...|+++++..+|+|||||+|+ +++.++.+. +.|+
T Consensus 228 ----~rW~-~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~-~~pd 301 (510)
T PRK00750 228 ----MRWA-ALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNVITIEDWLEY-APPE 301 (510)
T ss_pred ----HHHH-HcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCccCHHHHHHH-CCHH
Confidence 1112 349999999999999 9999999998 99999999999999998889999999998 588888777 8999
Q ss_pred HHHHHHHH
Q 013441 325 AMVNYLAL 332 (443)
Q Consensus 325 ai~n~l~~ 332 (443)
+++.|+..
T Consensus 302 ~lR~~l~~ 309 (510)
T PRK00750 302 SLRLFMFA 309 (510)
T ss_pred HHHHHHHh
Confidence 99977764
No 48
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.49 E-value=3.8e-13 Score=148.60 Aligned_cols=268 Identities=19% Similarity=0.253 Sum_probs=153.9
Q ss_pred CCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHcCCCCCC
Q 013441 62 PSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWLGLDWDE 123 (443)
Q Consensus 62 PSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~----------------~R~~~~~~~~I~~dL~wLGl~wDe 123 (443)
|+|||.+||||+++.+...++||. ..|.=++.+..||. ....+.+.+.+.+++++|||.+|.
T Consensus 11 py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~~d~ 90 (673)
T PRK00133 11 PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGFGISFDN 90 (673)
T ss_pred CCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 899999999999999999999985 45666666666663 123467889999999999999986
Q ss_pred CCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee-----ecCCHHHHHHHHHHHHhCCCCC------CCCCc---C-CC
Q 013441 124 GPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPP------VYTGK---W-AT 188 (443)
Q Consensus 124 gp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~------~Y~g~---c-r~ 188 (443)
.+ .....++.+..+++.++|.++|.+|. .||...+-.-- +. ...|.-| .+... | ..
T Consensus 91 f~-------rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~-~~-~v~g~cp~C~~~d~~g~~ce~cg~~ 161 (673)
T PRK00133 91 YG-------STHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLP-DR-FVKGTCPKCGAEDQYGDNCEVCGAT 161 (673)
T ss_pred Cc-------cCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCcc-ch-heecccCCCCCcccCCchhhhcccc
Confidence 31 22233588899999999999999997 56655432100 00 0001100 11111 2 11
Q ss_pred CCHHHHHHHH--hcCCCceEE------EecCCCCceeeeecccce----eeec-----------CCCCCCeEEEecC---
Q 013441 189 ATDAEVQKEL--ERGTPYTYR------FRVPKGGSLKISDLIRGE----VSWN-----------LDTLGDFVIMRSN--- 242 (443)
Q Consensus 189 ls~~e~~~~~--~~g~~~~iR------~k~~~~~~~~~~D~v~G~----i~~~-----------~~~~~D~VL~RsD--- 242 (443)
+.+.++.... ..|.+..+| |+++. |.|.+.-. ..++ ...+.|.-|-|.-
T Consensus 162 ~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~ 236 (673)
T PRK00133 162 YSPTELINPKSAISGATPVLKESEHFFFKLPR-----FEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYF 236 (673)
T ss_pred CChHhhcCCccccCCCcceEEecceEEEEHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceeeeCCcc
Confidence 3333332211 124443333 44432 11111000 0010 1235677777653
Q ss_pred Cc-----------------cccchhhh--hhc--------cc-----CCcceEEecCCCCCCHHHHHH----HHHHcCCC
Q 013441 243 GQ-----------------PVYNFCVT--VDD--------AT-----MAISHVIRAEEHLPNTLRQAL----IYKALGFS 286 (443)
Q Consensus 243 G~-----------------PtY~fA~v--VDD--------~~-----m~ITHVIRG~D~l~ntp~q~~----ly~aLg~~ 286 (443)
|. +.|--+.. .++ .- -.+.|+| |.| +...|.. ++.+.|++
T Consensus 237 GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkD---i~~fH~i~wpa~l~a~g~~ 312 (673)
T PRK00133 237 GFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFI-GKD---IIYFHTLFWPAMLEGAGYR 312 (673)
T ss_pred ceECCCCCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEE-eec---chhHHHHHHHHHHHhCCCC
Confidence 22 22211110 111 00 1134554 555 4556643 34567998
Q ss_pred CCcEE-EeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHH
Q 013441 287 MPYFA-HVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLV 350 (443)
Q Consensus 287 ~P~f~-Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli 350 (443)
.|.-. -+.+++. +|+|||||.|+ ++..++.++ |.++++|.||+..+... ..+-.|+++++.
T Consensus 313 lP~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~-ygaDalR~~ll~~~~~~-~~D~~Fs~~~~~ 375 (673)
T PRK00133 313 LPTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDH-LDPDYLRYYLAAKLPET-IDDLDFNWEDFQ 375 (673)
T ss_pred CCCEEeeeccEEe-cCCcccccCCcccCHHHHHHH-cCchHHHHHHHhcCCCC-CCCCCCCHHHHH
Confidence 88533 3356566 99999999998 588888888 88999999998765321 023357777653
No 49
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.49 E-value=2.1e-13 Score=152.72 Aligned_cols=273 Identities=17% Similarity=0.226 Sum_probs=162.6
Q ss_pred CCCCCCcCChhhHHH-HHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHcCCCC
Q 013441 61 APSPTGNLHVGGART-ALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWLGLDW 121 (443)
Q Consensus 61 APSPTG~LHiG~~rt-AL~n~l~Ar~--~gG~fiLRIEDTD~----------------~R~~~~~~~~I~~dL~wLGl~w 121 (443)
-|.|||.+||||+++ .|....+||. ..|.=++-+..||. +...+.+.+.+.+.++|+||.|
T Consensus 25 ~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l~i~~ 104 (801)
T PLN02610 25 LPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISF 104 (801)
T ss_pred CCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcc
Confidence 389999999999995 6778999985 57888888888884 1124566778888999999999
Q ss_pred CCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee-----ecCCHHHHH-HHHHHHHhCCCCCC--------CCC---
Q 013441 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELE-KMKEIAKLKQLPPV--------YTG--- 184 (443)
Q Consensus 122 Degp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~-~~r~~~~~~~~~~~--------Y~g--- 184 (443)
|.. .....-++...-+++.++|.++|..|. -||...+-. .-+ ...|.-|. |..
T Consensus 105 D~f-------~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~---~v~G~CP~~~C~~~~a~Gd~Ce 174 (801)
T PLN02610 105 DKF-------GRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADR---LVEGTCPTEGCNYDSARGDQCE 174 (801)
T ss_pred ccC-------ccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchH---HhcCcCCccccCccccccchhh
Confidence 963 122222356777888889999999997 345443321 000 01121111 211
Q ss_pred cC-CCCCHHHHHHHH--hcCCCceEE------EecCCCCceeeeecc---------ccee---------eecCCCCCCeE
Q 013441 185 KW-ATATDAEVQKEL--ERGTPYTYR------FRVPKGGSLKISDLI---------RGEV---------SWNLDTLGDFV 237 (443)
Q Consensus 185 ~c-r~ls~~e~~~~~--~~g~~~~iR------~k~~~~~~~~~~D~v---------~G~i---------~~~~~~~~D~V 237 (443)
.| +.+.+.|+.+.. ..|.+..+| |+++. |.|.+ .+.. .+-...+.|.-
T Consensus 175 ~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~-----~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~ 249 (801)
T PLN02610 175 KCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPL-----LKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRC 249 (801)
T ss_pred hccccCChhhhcCCcccCCCCcceEEEcceEEEEhHH-----HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcc
Confidence 13 223444433211 135554444 45542 22211 1100 11123567887
Q ss_pred EEec---------CCc---cccc--------hhhh------hhcc-----cCCcceEEecCCCCCCHHHHHHHHHH----
Q 013441 238 IMRS---------NGQ---PVYN--------FCVT------VDDA-----TMAISHVIRAEEHLPNTLRQALIYKA---- 282 (443)
Q Consensus 238 L~Rs---------DG~---PtY~--------fA~v------VDD~-----~m~ITHVIRG~D~l~ntp~q~~ly~a---- 282 (443)
|.|. ||+ ..|- ++.. -.++ .-.+.|+|-- | |+..|..++-|
T Consensus 250 IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGK-D---i~~fH~i~wPa~L~a 325 (801)
T PLN02610 250 ITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGK-D---NVPFHTVMFPSTLLG 325 (801)
T ss_pred eeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEee-e---cchhHHHHHHHHHHh
Confidence 8774 221 1221 1111 0111 1123577744 3 66788766654
Q ss_pred cC--CCCCcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccc
Q 013441 283 LG--FSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFT 354 (443)
Q Consensus 283 Lg--~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~ 354 (443)
.| |+.|.-.+..-.++.+|+||||+.|+ +...++.+.+|.++++|.||+.-+ +...+..||++++++.++
T Consensus 326 ~g~~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~--p~~~D~dFs~~~f~~~~N 398 (801)
T PLN02610 326 TGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNR--PEVSDTLFTWADLQAKLN 398 (801)
T ss_pred CCCCcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcC--CCCCCCcCCHHHHHHHHH
Confidence 46 45776444443356689999999998 588899888899999999998864 333455688887766443
No 50
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.48 E-value=1.3e-12 Score=132.10 Aligned_cols=247 Identities=19% Similarity=0.276 Sum_probs=134.1
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH--cCCe---EEEEecCCCcc-------------cCcHHHHHHHHHHHHHcCCCCC
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS--KGGK---FVLRIEDTDLE-------------RSTKESEEAVLQDLSWLGLDWD 122 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~---fiLRIEDTD~~-------------R~~~~~~~~I~~dL~wLGl~wD 122 (443)
.|.|||.+||||+++.++..+++|. ..|. |+.-+||.+.+ ..++.+.+.+.+++++||+++|
T Consensus 8 ~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 87 (319)
T cd00814 8 LPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFD 87 (319)
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 3899999999999999988888884 3444 55555555432 2356788899999999999998
Q ss_pred CCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee-----ecCCHHH---------------HHHHHHHHH---hCCCC
Q 013441 123 EGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEE---------------LEKMKEIAK---LKQLP 179 (443)
Q Consensus 123 egp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~ee---------------l~~~r~~~~---~~~~~ 179 (443)
..+ -..++.+.+..++++++|.++|.+|. -+|...+ |.+.++... ..+..
T Consensus 88 ~~~-------~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~ 160 (319)
T cd00814 88 YFI-------RTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPD 160 (319)
T ss_pred CCe-------eCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCc
Confidence 631 11233466778899999999999996 2232211 122221111 00000
Q ss_pred CCCCCcCCCCCHHHHHHHHhcCCC-------c-eEEEecCCCCc---eeeeecccceeeecCCCCCCeEEEecCCccccc
Q 013441 180 PVYTGKWATATDAEVQKELERGTP-------Y-TYRFRVPKGGS---LKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYN 248 (443)
Q Consensus 180 ~~Y~g~cr~ls~~e~~~~~~~g~~-------~-~iR~k~~~~~~---~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~ 248 (443)
...+ .--..++.+.+.+|.+ . .|-+.+|.... .+|-|..-|-++. .|.+.-+
T Consensus 161 ~~~p----~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~-------------~~~~~~~ 223 (319)
T cd00814 161 FIWP----ENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISA-------------TGYYNEE 223 (319)
T ss_pred cCCC----HHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHH-------------ccccccc
Confidence 0110 0001233333444321 1 12222222110 1122222221110 0111000
Q ss_pred hhhh--hhcccCCcceEEecCCCCCC-HHHHHHHHHHcCCCCCc-EEEeeceecCCCceecccCCC-CChHHHHHCCCCH
Q 013441 249 FCVT--VDDATMAISHVIRAEEHLPN-TLRQALIYKALGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLP 323 (443)
Q Consensus 249 fA~v--VDD~~m~ITHVIRG~D~l~n-tp~q~~ly~aLg~~~P~-f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~p 323 (443)
-.+. -.+..-.+.|++ |.|.+.. +-....+..++|+++|. +.+...++. +|+||||+.|+ +++.++.+. +.|
T Consensus 224 ~~~~~~~~~~~~~~v~~~-G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~~~-~g~kmSkS~gn~i~~~~~l~~-~~~ 300 (319)
T cd00814 224 WGNSWWWKDGWPELVHFI-GKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYLTV-EGKKMSKSRGNVVDPDDLLER-YGA 300 (319)
T ss_pred ccchhhhhcCCCceEEEE-eechhhhhHHHHHHHHHhCCCCCCcEeeeeeeEEE-CCeeecccCCcccCHHHHHHH-cCc
Confidence 0000 001122345555 6676532 11112345667888774 445555444 58999999997 688888887 799
Q ss_pred HHHHHHHHHhC
Q 013441 324 QAMVNYLALLG 334 (443)
Q Consensus 324 eai~n~l~~LG 334 (443)
++++.||+..+
T Consensus 301 d~~R~~l~~~~ 311 (319)
T cd00814 301 DALRYYLLRER 311 (319)
T ss_pred hHHHHHHHhcC
Confidence 99999998875
No 51
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.47 E-value=1.8e-12 Score=132.84 Aligned_cols=243 Identities=18% Similarity=0.184 Sum_probs=147.4
Q ss_pred CceEEEeCCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcccC--------------------------
Q 013441 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLERS-------------------------- 102 (443)
Q Consensus 54 ~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~~R~-------------------------- 102 (443)
.++.+-=+++|+|.+||||+++.+.....+|. +...|+.-.||-|+-|.
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 35777778999999999999999988777774 56778888899987444
Q ss_pred ----cHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHc-CCeeeecCCHHHHHHHHHHHHh
Q 013441 103 ----TKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLES-GHVYRCFCSNEELEKMKEIAKL 175 (443)
Q Consensus 103 ----~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~-G~AY~Cfcs~eel~~~r~~~~~ 175 (443)
.+.+.+.+.+.|+.||+++|. |++++ +...|.+.+...+++ +.+ ++-|.+.+.....
T Consensus 99 ~~~~~d~~~~~f~~~l~~lgi~~d~----------~~~T~~y~~g~~~~~i~~~L~~~~~I------~~i~~~~~~~~~~ 162 (353)
T cd00674 99 CESYAEHFERPFEESLEKLGIEVEF----------ISQSQMYKSGLYDENILIALEKRDEI------MAILNEYRGRELQ 162 (353)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeeee----------eecCCchhhchHHHHHHHHHHHCChH------HHHHHHhcCCccC
Confidence 356677889999999999884 56665 455677776655554 333 1223333221111
Q ss_pred CCCCC--CCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhh
Q 013441 176 KQLPP--VYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTV 253 (443)
Q Consensus 176 ~~~~~--~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vV 253 (443)
..-.| .+...|..++ ..+.+ -++...+|+++... |. .|.+..... .-..-||-|=---
T Consensus 163 ~~~~P~~p~c~~cg~~~-~~v~~--~d~~~~~v~y~c~c-G~-------~g~~~~~~g--~~KL~Wr~dW~~r------- 222 (353)
T cd00674 163 ETWYPFMPYCEKCGKDT-TTVEA--YDAKAGTVTYKCEC-GH-------EETVDIRTG--RGKLTWRVDWPMR------- 222 (353)
T ss_pred CCceeeeeecCCcCcce-eEEEE--EeCCCCeEEEEcCC-CC-------EEEEeecCC--CcccCCCCCchhh-------
Confidence 11111 1233444332 11100 01111223333211 11 112211100 0011222221111
Q ss_pred hcccCCcceEEecCCCCCC---HHHHHHHHH-HcCCCCCcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHH
Q 013441 254 DDATMAISHVIRAEEHLPN---TLRQALIYK-ALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVN 328 (443)
Q Consensus 254 DD~~m~ITHVIRG~D~l~n---tp~q~~ly~-aLg~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n 328 (443)
.. ..||+.=+=|.||... -..-..+.+ +||+++|....+.+|+..+|.|||||+|+ ++++++.+. +.|++++.
T Consensus 223 W~-~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~-~~~dalR~ 300 (353)
T cd00674 223 WA-ILGVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGNVITPSDWLEV-APPEVLRY 300 (353)
T ss_pred hh-hcCCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCCcCCHHHHHHH-hChHHHHH
Confidence 11 3477777889999866 555567777 99999997666688887777799999998 699999888 89999998
Q ss_pred HHHHhC
Q 013441 329 YLALLG 334 (443)
Q Consensus 329 ~l~~LG 334 (443)
|+....
T Consensus 301 ~~l~~~ 306 (353)
T cd00674 301 LYARRK 306 (353)
T ss_pred HHHhCC
Confidence 887654
No 52
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.45 E-value=1.2e-12 Score=142.09 Aligned_cols=138 Identities=16% Similarity=0.250 Sum_probs=87.6
Q ss_pred CCeEEEecCCcccc---chhhhhhcccCCcceEEe--cCCCCCCHHHHHHHHHHcCCCCC-cEEEeeceecCCCceeccc
Q 013441 234 GDFVIMRSNGQPVY---NFCVTVDDATMAISHVIR--AEEHLPNTLRQALIYKALGFSMP-YFAHVSLILAPDRSKLSKR 307 (443)
Q Consensus 234 ~D~VL~RsDG~PtY---~fA~vVDD~~m~ITHVIR--G~D~l~ntp~q~~ly~aLg~~~P-~f~Hlplil~~dg~KLSKR 307 (443)
.|.||.||||.+|| ++|...+-...+.+.+|- |.||..--++-..+.++||++.| .+.|++.-+. ++.|||||
T Consensus 298 ~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V-~~~kmSkr 376 (566)
T TIGR00456 298 KDRVLQKSDGTYLYLTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMV-PLGSMKTR 376 (566)
T ss_pred CCeEEEECCCCceechhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEE-ECCCCCcc
Confidence 48999999999999 577776655447888876 99987554444577789999877 6788875333 35799999
Q ss_pred CCC-CChHHHHHCCCCHHHHHHHHHHhCCCCC-CCCcccCHHHHHhccccccccCCCccccHHHHHHHHH
Q 013441 308 HGA-TSVGQFREMGYLPQAMVNYLALLGWGDG-TENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNG 375 (443)
Q Consensus 308 ~g~-~si~~~r~~G~~peai~n~l~~LG~~~~-~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~ 375 (443)
.|+ +++.++.++ .-+...+.+..-+-... ...+.+.. +.+..|.+..-..+...||++++..+|+
T Consensus 377 ~Gn~V~~~dll~~--~~~ra~~~i~~~~~~~~~~~~~~vg~-dAvRy~~L~~~~~~d~~Fd~d~~~~~~~ 443 (566)
T TIGR00456 377 RGNVISLDNLLDE--ASKRAGNVITIKNDLEEEDVADAVGI-GAVRYFDLSQNRETHYVFDWDAMLSFEG 443 (566)
T ss_pred CCceeeHHHHHHH--HHHHHHHHHHhcCCccHHHHHHHhcc-cceeeHHhhcCCCCCceecHHHHhccCC
Confidence 998 467666443 11122222221110000 00000111 2345777777777889999998877765
No 53
>PLN02286 arginine-tRNA ligase
Probab=99.45 E-value=1.8e-12 Score=140.87 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=91.9
Q ss_pred CCeEEEecCCcccc---chhhhhhcccC-CcceEEe--cCCCCCCHHHHHHHHHHcCCCCC----cEEEee--ceecCCC
Q 013441 234 GDFVIMRSNGQPVY---NFCVTVDDATM-AISHVIR--AEEHLPNTLRQALIYKALGFSMP----YFAHVS--LILAPDR 301 (443)
Q Consensus 234 ~D~VL~RsDG~PtY---~fA~vVDD~~m-~ITHVIR--G~D~l~ntp~q~~ly~aLg~~~P----~f~Hlp--lil~~dg 301 (443)
.|.||.||||.+|| ++|...+-+.. +.+++|- |.||..--.+-..+.++||+..+ ...|+. +|++.+|
T Consensus 297 ~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g 376 (576)
T PLN02286 297 IPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG 376 (576)
T ss_pred CceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC
Confidence 47999999999999 68888876655 5777776 88885433323366788998633 577875 6777889
Q ss_pred ceecccCCC-CChHHHHHCCCCHHHHHHHHHHhC-------CCCCCC---CcccCHHHHHhccccccccCCCccccHHHH
Q 013441 302 SKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG-------WGDGTE---NEFFTLKQLVEKFTIERVNKSGAIFDSTKL 370 (443)
Q Consensus 302 ~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG-------~~~~~~---~e~~s~~eli~~F~l~~v~~~~~~fd~~kL 370 (443)
+|||||.|. ++++++.++ ++......+. ++.... .+.... ..+..|++.+-..++..||++++
T Consensus 377 ~kmStR~G~~v~L~dllde-----a~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~-~Airy~~L~~~~~~~~~Fd~d~~ 450 (576)
T PLN02286 377 KRFRTRSGEVVRLVDLLDE-----AKSRSKAALIERGKDSEWTPEELEQAAEAVGY-GAVKYADLKNNRLTNYTFSFDQM 450 (576)
T ss_pred CcccCCCCCeeEHHHHHHH-----HHHHHHHHHHhccCccccchhhHHHHHHHhhh-hhhhhhhhhcCCCCCCccCHHHH
Confidence 999999997 589998664 2222222221 111000 001111 23568888888889999999998
Q ss_pred HHHHH
Q 013441 371 RWMNG 375 (443)
Q Consensus 371 ~~~n~ 375 (443)
..+++
T Consensus 451 l~~~g 455 (576)
T PLN02286 451 LDLKG 455 (576)
T ss_pred HhhcC
Confidence 88853
No 54
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.45 E-value=1.8e-12 Score=139.31 Aligned_cols=95 Identities=23% Similarity=0.364 Sum_probs=71.5
Q ss_pred EEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEE---EecCCCc-------------ccCcHHHHHHHHHHHHHcC
Q 013441 57 RVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVL---RIEDTDL-------------ERSTKESEEAVLQDLSWLG 118 (443)
Q Consensus 57 r~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiL---RIEDTD~-------------~R~~~~~~~~I~~dL~wLG 118 (443)
+|--.|+|||.+||||+++.+...+++|. ..|.-++ -+||.|. ...++.+.+.+.+++++||
T Consensus 3 it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg 82 (530)
T TIGR00398 3 ITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLN 82 (530)
T ss_pred EecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34456999999999999999999888874 4455444 4444432 1235678899999999999
Q ss_pred CCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee
Q 013441 119 LDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 119 l~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 158 (443)
+.+|..+ ....+++.+..+++.++|.++|.+|.
T Consensus 83 I~~D~~~-------~t~~~~~~~~v~~~~~~L~~kG~iY~ 115 (530)
T TIGR00398 83 ISFDRFI-------RTTDEEHKEIVQKIFQKLKENGYIYE 115 (530)
T ss_pred CCCCCCc-------cCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9998632 11234477888999999999999995
No 55
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.44 E-value=1.4e-12 Score=141.43 Aligned_cols=137 Identities=17% Similarity=0.196 Sum_probs=92.3
Q ss_pred CCeEEEecCCcccc---chhhhhhcccC-CcceEEe--cCCCCCCHHHHHHHHHHcCCCCC-cEEEee--ceecCCCcee
Q 013441 234 GDFVIMRSNGQPVY---NFCVTVDDATM-AISHVIR--AEEHLPNTLRQALIYKALGFSMP-YFAHVS--LILAPDRSKL 304 (443)
Q Consensus 234 ~D~VL~RsDG~PtY---~fA~vVDD~~m-~ITHVIR--G~D~l~ntp~q~~ly~aLg~~~P-~f~Hlp--lil~~dg~KL 304 (443)
.|.||.||||.+|| ++|...+=+.. +.+++|- |.||..--++=..+.++|||..+ .+.|+. +|. .+|+||
T Consensus 294 ~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g~km 372 (562)
T PRK12451 294 PPCLIRKSDGATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDGKKM 372 (562)
T ss_pred CceEEEeCCCccccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCCCCC
Confidence 58999999999999 68887776654 7888887 88886443333467789998754 577875 444 478899
Q ss_pred cccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHH-----HHhccccccccCCCccccHHHHHHHHHH
Q 013441 305 SKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQ-----LVEKFTIERVNKSGAIFDSTKLRWMNGQ 376 (443)
Q Consensus 305 SKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~e-----li~~F~l~~v~~~~~~fd~~kL~~~n~~ 376 (443)
|||.|. ++++++.+. ++......+.-..++-.+.-...+ .+..|++++-..++..||++++..+++.
T Consensus 373 StR~G~~v~l~dLlde-----a~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~ 445 (562)
T PRK12451 373 STRKGRVVLLEEVLEE-----AIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGE 445 (562)
T ss_pred cCCCCCeeEHHHHHHH-----HHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCC
Confidence 999997 689998664 333333333111110001111111 2457788888889999999999888743
No 56
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=7.6e-13 Score=143.09 Aligned_cols=137 Identities=17% Similarity=0.241 Sum_probs=94.0
Q ss_pred CCCCeEEEecCCcccc---chhhhhhcccCCcceEEe--cCCCCCCHHHHH-HHHHHcCCCCCc--EEEee--ceecCCC
Q 013441 232 TLGDFVIMRSNGQPVY---NFCVTVDDATMAISHVIR--AEEHLPNTLRQA-LIYKALGFSMPY--FAHVS--LILAPDR 301 (443)
Q Consensus 232 ~~~D~VL~RsDG~PtY---~fA~vVDD~~m~ITHVIR--G~D~l~ntp~q~-~ly~aLg~~~P~--f~Hlp--lil~~dg 301 (443)
...|.||.||||.++| ++|...+-+..+-+.+|- |.||.-- .+|+ .+.+++|+.++. ..|.+ ++.+.+|
T Consensus 303 d~~~~vl~KSDGt~lY~t~DIAy~~~K~~~~~d~~IyV~gadq~~~-~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g 381 (577)
T COG0018 303 DDKDRVLQKSDGTYLYFTRDIAYHLYKFERGFDKLIYVLGADQHGH-FKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEG 381 (577)
T ss_pred CCCCeEEEEcCCCeeeehhHHHHHHHHHhcCCCEEEEEeCCcchhH-HHHHHHHHHHhcCCCccceEEEEEEeeeECCCC
Confidence 3469999999999999 799999877778888887 9998643 2333 555788988774 67764 7777789
Q ss_pred ceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCC---cccCHHHHHhccccccccCCCccccHHHHHHHHH
Q 013441 302 SKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTEN---EFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNG 375 (443)
Q Consensus 302 ~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~---e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~ 375 (443)
.|||||.|. ++++++.+. +.-.....+.-...... +..-+ ..+..+++..-..++.+||+++++.+++
T Consensus 382 ~kmStR~G~~vtl~dllde-----~~era~~~~~~~~~~~~~iA~~vgi-~Avry~~l~~~~~~~~~Fd~d~~lsfeg 453 (577)
T COG0018 382 VKMSTRAGNVVTLDDLLDE-----AGERAPEEMEEKEEKNEEIAEVVGI-DAVRYADLSRSRDKDYVFDWDKALSFEG 453 (577)
T ss_pred ccccccCCceEEHHHHHHH-----HHHHhhhHhhhhhhhhHHHHHHhhh-hhHHHHHHhcCCCCCcEeeHHHHHhccC
Confidence 999999998 588887554 22111111110000000 11111 2456778877777999999999999998
No 57
>PLN02224 methionine-tRNA ligase
Probab=99.43 E-value=3.3e-12 Score=139.42 Aligned_cols=256 Identities=20% Similarity=0.260 Sum_probs=145.8
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHc
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWL 117 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~----------------~R~~~~~~~~I~~dL~wL 117 (443)
+.+==.|.|||.+||||+++.+....+||. ..|.=++.+..||. .....++.+.+.+.+++|
T Consensus 72 ~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 151 (616)
T PLN02224 72 VLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL 151 (616)
T ss_pred EEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Confidence 455556699999999999999999999985 45655555555552 112356677888999999
Q ss_pred CCCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcC-CCCCHHHH
Q 013441 118 GLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKW-ATATDAEV 194 (443)
Q Consensus 118 Gl~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~c-r~ls~~e~ 194 (443)
||+||.. ++-++ +...-++...+|.++|.+|.-. .+--|+-.| +-+++.|+
T Consensus 152 ~I~~D~f---------~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~-----------------~~~~yc~~ce~f~~~~~l 205 (616)
T PLN02224 152 DIAYDKF---------IRTTDPKHEAIVKEFYARVFANGDIYRAD-----------------YEGLYCVNCEEYKDEKEL 205 (616)
T ss_pred CCCCCcC---------eeCCCHHHHHHHHHHHHHHHHCCCEEEee-----------------eeeeecCCCCCCCCHHHH
Confidence 9999963 34333 6677888889999999999710 001122222 11222221
Q ss_pred HHH---HhcCCCceEE------EecCCCCceeeeeccccee-----------------eecCCCCCCeEEEecC---Ccc
Q 013441 195 QKE---LERGTPYTYR------FRVPKGGSLKISDLIRGEV-----------------SWNLDTLGDFVIMRSN---GQP 245 (443)
Q Consensus 195 ~~~---~~~g~~~~iR------~k~~~~~~~~~~D~v~G~i-----------------~~~~~~~~D~VL~RsD---G~P 245 (443)
.+. ...|.|..+| |+++. |.|.+.-.+ .+-...+.|.-|-|.. |.|
T Consensus 206 ~~~~~~~~~~~~~~~~~e~~~ff~Ls~-----~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIp 280 (616)
T PLN02224 206 LENNCCPVHQMPCVARKEDNYFFALSK-----YQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIP 280 (616)
T ss_pred cCCCCCCCCCCcceEEecceEEEEhHH-----HHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceE
Confidence 100 0012222222 33321 111110000 1111246677777742 333
Q ss_pred c--------cc---------hhhhh--hcc------c---CCcceEEecCCCCCCHHHHHHHHH----HcCCCCCcE-EE
Q 013441 246 V--------YN---------FCVTV--DDA------T---MAISHVIRAEEHLPNTLRQALIYK----ALGFSMPYF-AH 292 (443)
Q Consensus 246 t--------Y~---------fA~vV--DD~------~---m~ITHVIRG~D~l~ntp~q~~ly~----aLg~~~P~f-~H 292 (443)
. |- -++.- ++. . -..-|+| |.|.+ +.|..++- ++|++.|.- ..
T Consensus 281 vP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~i-GKDii---~fH~i~wpa~l~~~g~~~P~~i~~ 356 (616)
T PLN02224 281 VPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLI-GKDIL---RFHAVYWPAMLMSAGLELPKMVFG 356 (616)
T ss_pred CCCCCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEE-eeccc---ccHHHHHHHHHHHCCCCCCcEEEe
Confidence 2 11 11100 000 0 0123554 66654 44554443 458888843 33
Q ss_pred eeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHH
Q 013441 293 VSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLV 350 (443)
Q Consensus 293 lplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli 350 (443)
+.. +..+|+||||+.|+ +.+.++.+. |.+++++.||+..+ +..++..|+.++++
T Consensus 357 ~g~-l~~eG~KMSKS~GN~i~p~e~l~~-ygaD~~R~yLl~~~--p~~~d~~fs~~~~~ 411 (616)
T PLN02224 357 HGF-LTKDGMKMGKSLGNTLEPFELVQK-FGPDAVRYFFLREV--EFGNDGDYSEDRFI 411 (616)
T ss_pred ccc-EecCCccccccCCccCCHHHHHHH-cCcHHHHHHHHhcC--CCcCCCCCCHHHHH
Confidence 345 56799999999998 588888877 89999999998764 23334457766654
No 58
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.41 E-value=2.6e-12 Score=141.46 Aligned_cols=252 Identities=23% Similarity=0.288 Sum_probs=142.7
Q ss_pred CCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc---c-------------cCcHHHHHHHHHHHHHcCCCCCC
Q 013441 62 PSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL---E-------------RSTKESEEAVLQDLSWLGLDWDE 123 (443)
Q Consensus 62 PSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~---~-------------R~~~~~~~~I~~dL~wLGl~wDe 123 (443)
|.|||.+||||+++.+...+++|. ..|.=++.+..||. + ...+.+.+.|.+++++|||.+|.
T Consensus 13 py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D~ 92 (648)
T PRK12267 13 YYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDK 92 (648)
T ss_pred CCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 899999999999999999999984 45655555566552 1 23567889999999999999997
Q ss_pred CCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeee-----cCCHHHHHHHHHHHHhCCCCCCC--C-CcCCCCCHHH
Q 013441 124 GPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRC-----FCSNEELEKMKEIAKLKQLPPVY--T-GKWATATDAE 193 (443)
Q Consensus 124 gp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~eel~~~r~~~~~~~~~~~Y--~-g~cr~ls~~e 193 (443)
. ++-++ +...-+++.++|.++|++|.- ||...+-. .+..| + ++|-
T Consensus 93 f---------~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~----------l~~~~l~~~~~c~------ 147 (648)
T PRK12267 93 F---------IRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETF----------FTESQLVDGGKCP------ 147 (648)
T ss_pred C---------eeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCcc----------CChHHhccCCcCC------
Confidence 3 23333 666778999999999999972 33222110 00000 0 1221
Q ss_pred HHHHHhcCCCceEE------EecCCC----------C-ceeeeeccccee--eecCCCCCCeEEEecC---Ccc------
Q 013441 194 VQKELERGTPYTYR------FRVPKG----------G-SLKISDLIRGEV--SWNLDTLGDFVIMRSN---GQP------ 245 (443)
Q Consensus 194 ~~~~~~~g~~~~iR------~k~~~~----------~-~~~~~D~v~G~i--~~~~~~~~D~VL~RsD---G~P------ 245 (443)
..|.+..+| |+++.- . ...+....+..+ .+-...+.|.-|-|.. |.|
T Consensus 148 -----~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~ 222 (648)
T PRK12267 148 -----DCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPK 222 (648)
T ss_pred -----CCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCC
Confidence 012222222 333210 0 000000001111 1111236677777752 222
Q ss_pred --ccc--------hhhhh--h----cc---cCCcceEEecCCCCCCHHHHHHH----HHHcCCCCCcEEEe-eceecCCC
Q 013441 246 --VYN--------FCVTV--D----DA---TMAISHVIRAEEHLPNTLRQALI----YKALGFSMPYFAHV-SLILAPDR 301 (443)
Q Consensus 246 --tY~--------fA~vV--D----D~---~m~ITHVIRG~D~l~ntp~q~~l----y~aLg~~~P~f~Hl-plil~~dg 301 (443)
.|- ++..- + +. --...|++ |.|.+ ..|..+ ..++|+++|.-..+ ..++ .+|
T Consensus 223 ~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~-GkDii---~fH~i~wpa~l~~~~~~~p~~v~~hg~l~-~eg 297 (648)
T PRK12267 223 HVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLV-GKDIL---RFHAIYWPIMLMALGLPLPKKVFAHGWWL-MKD 297 (648)
T ss_pred CEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEE-eeeec---chhHHHHHHHHHhCCCCCCcEEEecceEE-ECC
Confidence 111 11100 0 00 00112333 55644 456544 45678888864443 3433 368
Q ss_pred ceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHh
Q 013441 302 SKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVE 351 (443)
Q Consensus 302 ~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~ 351 (443)
+||||+.|+ +++.++.+. |.++++|.||+.-+ +...+-.|+.+++.+
T Consensus 298 ~KMSKS~GN~i~p~d~l~~-ygaD~lR~~L~~~~--~~~~D~~fs~~~~~~ 345 (648)
T PRK12267 298 GKMSKSKGNVVDPEELVDR-YGLDALRYYLLREV--PFGSDGDFSPEALVE 345 (648)
T ss_pred ceecccCCcccCHHHHHHH-cCCcHHHHHHHhcC--CCCCCCCCCHHHHHH
Confidence 999999998 578888776 89999999998753 222334577777644
No 59
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.34 E-value=1.4e-11 Score=133.36 Aligned_cols=89 Identities=27% Similarity=0.389 Sum_probs=68.8
Q ss_pred CCCCCCcCChhhHHHH-HHHHHHHHH--cCCeEEEEecCCCc---c-------------cCcHHHHHHHHHHHHHcCCCC
Q 013441 61 APSPTGNLHVGGARTA-LFNYLFARS--KGGKFVLRIEDTDL---E-------------RSTKESEEAVLQDLSWLGLDW 121 (443)
Q Consensus 61 APSPTG~LHiG~~rtA-L~n~l~Ar~--~gG~fiLRIEDTD~---~-------------R~~~~~~~~I~~dL~wLGl~w 121 (443)
.|.|||.+||||+++. +...+++|. ..|.-++.+..||. + ....++.+.+.++++.||++|
T Consensus 11 ~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~ 90 (556)
T PRK12268 11 WPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKKLGISY 90 (556)
T ss_pred CCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3889999999999998 877777774 34555555555543 1 123678899999999999999
Q ss_pred CCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeee
Q 013441 122 DEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 122 Degp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (443)
|.. ++-+ ++.+..+++.++|.++|++|.
T Consensus 91 d~~---------~~t~~~~~~~~~~~~~~~L~~~G~~y~ 120 (556)
T PRK12268 91 DLF---------TRTTSPNHHEVVQEFFLKLYENGYIYK 120 (556)
T ss_pred CCC---------cCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 863 2334 678889999999999999997
No 60
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.33 E-value=1.5e-11 Score=125.64 Aligned_cols=91 Identities=21% Similarity=0.267 Sum_probs=67.6
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH--cCCe---EEEEecC----CCcc--------------------------cCcHH
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS--KGGK---FVLRIED----TDLE--------------------------RSTKE 105 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~---fiLRIED----TD~~--------------------------R~~~~ 105 (443)
+|+|||.+||||+++.++..+++|. ..|. |+.-+|| ++.+ .-+++
T Consensus 9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T cd00818 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALR 88 (338)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHH
Confidence 4899999999999999988888874 3444 4445554 3211 11246
Q ss_pred HHHHHHHHHHHcCC--CCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee
Q 013441 106 SEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 106 ~~~~I~~dL~wLGl--~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 158 (443)
+.+.+.++++.||+ +||.. + -....++.+.-++..++|.++|++|.
T Consensus 89 ~~~~~~~~~~~lgi~~~~~~~------~-~T~~~~~~~~v~~~f~~L~~~G~iY~ 136 (338)
T cd00818 89 YVDEQEEQFQRLGVWVDWENP------Y-KTMDPEYMESVWWVFKQLHEKGLLYR 136 (338)
T ss_pred HHHHHHHHHHHhCceecCCCC------e-ECCCHHHHHHHHHHHHHHHHCCCEec
Confidence 67899999999999 78862 1 11344788889999999999999996
No 61
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.30 E-value=3.5e-11 Score=124.75 Aligned_cols=91 Identities=27% Similarity=0.350 Sum_probs=68.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc----------c----------------------CcHHH
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE----------R----------------------STKES 106 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~----------R----------------------~~~~~ 106 (443)
.|+|||.|||||+++.+....+||. ..|.-++.+..+|.- + .+.++
T Consensus 9 pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (382)
T cd00817 9 PPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEES 88 (382)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHH
Confidence 3899999999999999999999985 568877777777751 0 12456
Q ss_pred HHHHHHHHHHcCCC--CCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee
Q 013441 107 EEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 107 ~~~I~~dL~wLGl~--wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 158 (443)
.+.+.++++.||+. ||... .....++.+.-++...+|.++|++|.
T Consensus 89 ~~~~~~~~~~lgi~~Dw~~~~-------~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 89 GGKIREQLKRLGASVDWSREY-------FTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHhCceeecCCCc-------CCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 78899999999985 55521 11222345556677789999999997
No 62
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.30 E-value=3.2e-11 Score=115.74 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=53.5
Q ss_pred cchhhhh--hcccCCcceEEe--cCCCCC----CHHHHHHHHHH-cCCCCCc-EEEeeceecCCCceecccCCC-CChHH
Q 013441 247 YNFCVTV--DDATMAISHVIR--AEEHLP----NTLRQALIYKA-LGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQ 315 (443)
Q Consensus 247 Y~fA~vV--DD~~m~ITHVIR--G~D~l~----ntp~q~~ly~a-Lg~~~P~-f~Hlplil~~dg~KLSKR~g~-~si~~ 315 (443)
||+.|++ ..++ |-+-.|+ |.|++. |...|. .| .|-+.+. +.|. .+++.+|+|||||.|+ +++++
T Consensus 113 Wh~ec~am~~~~l-g~~~dih~~G~Dl~fpH~~~~~a~~---~a~~g~~~~~~~~h~-~~v~~~g~KMSKs~Gn~v~~~d 187 (213)
T cd00672 113 WHIECSAMAMKYL-GETFDIHGGGVDLIFPHHENEIAQS---EAATGKPFARYWLHT-GHLTIDGEKMSKSLGNFITVRD 187 (213)
T ss_pred hhHHHHHHHHHHc-CCCccEEeecCCCCcChHHHHHHHH---HHHhCCCCCcEEEEE-EEEeccCcchhhcCCCccCHHH
Confidence 6766643 2222 3322333 777663 333333 33 3554454 5566 4477899999999998 58999
Q ss_pred HHHCCCCHHHHHHHHHHhCC
Q 013441 316 FREMGYLPQAMVNYLALLGW 335 (443)
Q Consensus 316 ~r~~G~~peai~n~l~~LG~ 335 (443)
+.+. +.|++++.|+..-.+
T Consensus 188 ll~~-~~~da~R~~~l~~~~ 206 (213)
T cd00672 188 ALKK-YDPEVLRLALLSSHY 206 (213)
T ss_pred HHHH-cCHHHHHHHHHhCCc
Confidence 9885 999999998875543
No 63
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.30 E-value=1.2e-12 Score=136.20 Aligned_cols=270 Identities=24% Similarity=0.356 Sum_probs=142.5
Q ss_pred CCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHcCCCCCC
Q 013441 62 PSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWLGLDWDE 123 (443)
Q Consensus 62 PSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~----------------~R~~~~~~~~I~~dL~wLGl~wDe 123 (443)
|.|+|.|||||+.+.|.+..+||. ..|.=++-+..||. +....++.+.|.+.++.+||++|.
T Consensus 8 pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D~ 87 (391)
T PF09334_consen 8 PYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYDR 87 (391)
T ss_dssp EETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SE
T ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 899999999999999999999985 46776777777773 233567778999999999999996
Q ss_pred CCCCCCCCCceecc---ccHHHHHHHHHHHHHcCCeee-----ecCCHHHHHHHHHHHHhCCCCC------CCCCc---C
Q 013441 124 GPGVGGDYGPYRQS---ERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPP------VYTGK---W 186 (443)
Q Consensus 124 gp~~gg~~gpy~QS---er~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~------~Y~g~---c 186 (443)
|.++ ++.+.-+++.++|.++|..|. =||...+--. ......|.-| .+... |
T Consensus 88 ----------F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl--~e~~v~g~CP~C~~~~a~g~~Ce~c 155 (391)
T PF09334_consen 88 ----------FIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFL--PESFVEGTCPYCGSDKARGDQCENC 155 (391)
T ss_dssp ----------EEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE---GGGETCEETTT--SSCTTTEETTT
T ss_pred ----------eeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCccc--ccceeeccccCcCccccCCCcccCC
Confidence 4443 355667888899999999987 2333222100 0000111111 01111 2
Q ss_pred CC-CCHHHHHHH--HhcCCCceEE------EecCCCCceeeeeccc----ce-----------e-eecCCCCCCeEEEec
Q 013441 187 AT-ATDAEVQKE--LERGTPYTYR------FRVPKGGSLKISDLIR----GE-----------V-SWNLDTLGDFVIMRS 241 (443)
Q Consensus 187 r~-ls~~e~~~~--~~~g~~~~iR------~k~~~~~~~~~~D~v~----G~-----------i-~~~~~~~~D~VL~Rs 241 (443)
.. +.++|+.+. ...|.+..+| |+++. |.|.+. .. + .+-...+.|.-|-+.
T Consensus 156 G~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~-----~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~ 230 (391)
T PF09334_consen 156 GRPLEPEELINPVCKICGSPPEVREEENYFFKLSK-----FRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRP 230 (391)
T ss_dssp SSBEECCCSECEEETTTS-B-EEEEEEEEEE-GGG-----GHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECT
T ss_pred CCCcccccccCCccccccccCccccceEEEEehHH-----hHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecC
Confidence 11 111111000 0123333344 55542 222111 00 0 111134677777754
Q ss_pred C--Ccc--------cc---------chhh--hh--------------hcccCCcceEEecCCCCCCHHHHHHHHH----H
Q 013441 242 N--GQP--------VY---------NFCV--TV--------------DDATMAISHVIRAEEHLPNTLRQALIYK----A 282 (443)
Q Consensus 242 D--G~P--------tY---------~fA~--vV--------------DD~~m~ITHVIRG~D~l~ntp~q~~ly~----a 282 (443)
- |.| .| -.+. .. +|....+.|+|-- | +++.|..++. |
T Consensus 231 ~~WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGk-D---i~~fH~i~~pa~l~a 306 (391)
T PF09334_consen 231 LDWGIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGK-D---IIRFHAIYWPAMLLA 306 (391)
T ss_dssp TSSSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEG-G---GHHHHHTHHHHHHHH
T ss_pred CCCcceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEcc-c---hhHHHHHHhHHHHhc
Confidence 1 211 12 1111 01 2333456788754 4 5777775554 5
Q ss_pred cCCCCCcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhcccc
Q 013441 283 LGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTI 355 (443)
Q Consensus 283 Lg~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l 355 (443)
+|++.|.-....-.+..+|+||||+.|+ +.+.++.+. |.+++++.||+..+- ...+..|+.+++++.++=
T Consensus 307 ~~~~lP~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~-~~~D~~R~~L~~~~~--~~~d~~F~~~~~~~~~n~ 377 (391)
T PF09334_consen 307 AGLPLPRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEE-YGADALRYYLAREGP--EGQDSDFSWEDFIERVNN 377 (391)
T ss_dssp CTB---SEEEEE--EEETTCCEETTTTESSBHHHHHHH-H-HHHHHHHHHHHSS--TTS-EEE-HHHHHHHHHH
T ss_pred ccCCCCCEEEeeeeEEECCeeccccCCcccCHHHHHHh-CChHHHHHHHHHhcC--CCCCCCCCHHHHHHHHHH
Confidence 6888886443322233489999999997 688888888 899999999999763 234456899988876643
No 64
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.4e-10 Score=116.62 Aligned_cols=232 Identities=19% Similarity=0.243 Sum_probs=146.3
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc----cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 013441 61 APSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE----RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~~----R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~g 132 (443)
.--|||.|||||.-.|+.+|...+..+...+.-|-| |.+. .....++.+++.++-++||+++...
T Consensus 11 G~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~------- 83 (314)
T COG0180 11 GIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKST------- 83 (314)
T ss_pred cCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccE-------
Confidence 346999999999999999999988876666666666 3333 3467788889999999999999865
Q ss_pred ceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 013441 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (443)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~ 212 (443)
.|.||+..+.+ +....+-|..+-.+++++ +.|... .. ..+. .+
T Consensus 84 if~QS~v~e~~--------eLa~~l~~~~~~gel~r~----------~~fKdk--------~~---~~~~------~~-- 126 (314)
T COG0180 84 IFLQSEVPEHA--------ELAWLLSCVTNFGELERM----------TQFKDK--------SA---KKGE------SI-- 126 (314)
T ss_pred EEEccCchHHH--------HHHHHHHccCcHHHHHhh----------cCcchh--------hh---cccc------cc--
Confidence 79999998643 223556788888888765 334210 00 0010 11
Q ss_pred CCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC------CC
Q 013441 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FS 286 (443)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg------~~ 286 (443)
-.|.+.++.-+..|..+.++ ++|=-|+|..+---...-|.+.|+ ++
T Consensus 127 ---------~~Gl~~YPvlqAADILl~~a-------------------~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~ 178 (314)
T COG0180 127 ---------PIGLLTYPVLQAADILLYQA-------------------TLVPVGEDQDQHLELTRDIARRFNHLYGEVFP 178 (314)
T ss_pred ---------cccchhccHHHHHHhhhccC-------------------CeeccCCCchHHHHHHHHHHHHHHhhcCCccC
Confidence 12333333333344444444 555557775433333344556676 67
Q ss_pred CCcEEEe--eceecCCC-ceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCC--------CCCCcccCHHHHHhcccc
Q 013441 287 MPYFAHV--SLILAPDR-SKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGD--------GTENEFFTLKQLVEKFTI 355 (443)
Q Consensus 287 ~P~f~Hl--plil~~dg-~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~--------~~~~e~~s~~eli~~F~l 355 (443)
.|...+. +.|++.+| +||||+.++.+| .| -=.|+.+..-+...-... +++.|...+-++...|..
T Consensus 179 ~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I-~L---~D~~~~i~kKI~~~~td~~~~~~~~~~g~Pe~~~l~~~~~~~~~ 254 (314)
T COG0180 179 LPEALISKVARLPGLDGPGKMSKSDPNSAI-FL---LDDPKTIRKKIKKAATDGPTLIEYRKGGKPEVCNLFEIYSAFFE 254 (314)
T ss_pred CccccccCCCcccCCCCCCcccccCCCCee-ec---cCCHHHHHHHHHHhccCCCCccccCCCCCCCcchHHHHHHHhcC
Confidence 7765554 48888888 899999998433 11 127888888876643222 234556666666666632
Q ss_pred ccccCCCccccHHHHHHHHHHHHh
Q 013441 356 ERVNKSGAIFDSTKLRWMNGQHLR 379 (443)
Q Consensus 356 ~~v~~~~~~fd~~kL~~~n~~~l~ 379 (443)
|.+++ ++..+|-.
T Consensus 255 ----------~~~~~-ei~~~~~~ 267 (314)
T COG0180 255 ----------DDSIL-EIEAEYRG 267 (314)
T ss_pred ----------CCcHH-HHHHHHhc
Confidence 33333 77777765
No 65
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.23 E-value=3.6e-11 Score=123.56 Aligned_cols=86 Identities=23% Similarity=0.403 Sum_probs=59.0
Q ss_pred CCCeEEEecCCcccc---chhhhhhcc-cCCcceEEe--cCCCCCCHHHHH-HHHHHcCCC--CCcEEEee--ceecCCC
Q 013441 233 LGDFVIMRSNGQPVY---NFCVTVDDA-TMAISHVIR--AEEHLPNTLRQA-LIYKALGFS--MPYFAHVS--LILAPDR 301 (443)
Q Consensus 233 ~~D~VL~RsDG~PtY---~fA~vVDD~-~m~ITHVIR--G~D~l~ntp~q~-~ly~aLg~~--~P~f~Hlp--lil~~dg 301 (443)
..|.||.||||.+|| ++|...+=. ..+..-+|- |.||..- .+|+ .+.++||+. .....|++ +++.++|
T Consensus 207 ~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~~h-f~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~g 285 (354)
T PF00750_consen 207 DKDRVLRKSDGTSTYLTRDIAYHLYRFEEYGFDKIIYVVGADQKGH-FKQLFAILEALGYDPEAVKLQHVSFGVVLLKDG 285 (354)
T ss_dssp SS-EEEEETTSEB-HHHHHHHHHHHHHCCSS-SEEEEEEEGGGHHH-HHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTB
T ss_pred CCcceEEcCCCceEEEcchHHHHHHHHhhhccccEEEEecCchhhH-HHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCC
Confidence 357899999999999 578777655 456666665 7777432 2332 667889983 34677875 6778999
Q ss_pred c-eecccCCC-CChHHHHHC
Q 013441 302 S-KLSKRHGA-TSVGQFREM 319 (443)
Q Consensus 302 ~-KLSKR~g~-~si~~~r~~ 319 (443)
+ |||||+|. ++++++.++
T Consensus 286 k~~mstR~G~~i~l~dllde 305 (354)
T PF00750_consen 286 KVKMSTRKGNVITLDDLLDE 305 (354)
T ss_dssp EESS-TTTTSSTBHHHHHHH
T ss_pred CccccCCCCCceEHHHHHHH
Confidence 8 99999998 589988765
No 66
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.21 E-value=1.1e-10 Score=118.08 Aligned_cols=89 Identities=26% Similarity=0.399 Sum_probs=65.6
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cCcHHHHHHHHHHHHHcCCCCC
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE-------------RSTKESEEAVLQDLSWLGLDWD 122 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~~-------------R~~~~~~~~I~~dL~wLGl~wD 122 (443)
.|.|||.+||||+|+.+...+++|. +...|+.-+||.+.+ .-++.+.+.+.++|+.||+..|
T Consensus 8 ~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 8 FPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 3899999999999999988888874 345577777777643 1247788999999999999876
Q ss_pred CCCCCCCCCCceeccccHHHHHHHH----HHHHHcCCeee
Q 013441 123 EGPGVGGDYGPYRQSERNSLYKQYA----DKLLESGHVYR 158 (443)
Q Consensus 123 egp~~gg~~gpy~QSer~~~Y~~~a----~~Li~~G~AY~ 158 (443)
-.+ .++- ..+.|.+.+ .+|.++|.+|.
T Consensus 88 ~~~-------~~~t--~~~~~~~~v~~~f~~L~~~G~iy~ 118 (314)
T cd00812 88 WRR-------EFTT--CDPEYYKFTQWLFLKLYEKGLAYK 118 (314)
T ss_pred ccc-------cccc--CCHHHHHHHHHHHHHHHHCCCEEe
Confidence 321 2222 244455555 59999999997
No 67
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=99.19 E-value=3e-10 Score=115.81 Aligned_cols=240 Identities=18% Similarity=0.257 Sum_probs=138.0
Q ss_pred CCCCcCChhhHHHHHHHHHHHHH-cCCeEEEEecC----CCc--ccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcee
Q 013441 63 SPTGNLHVGGARTALFNYLFARS-KGGKFVLRIED----TDL--ERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~-~gG~fiLRIED----TD~--~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~ 135 (443)
-|||.+||||..+|+.+|+.... +|.+.++-|-| |+. .....+....+..++-.+||+|+... .|.
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~-------if~ 83 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVI-------FYR 83 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceE-------EEE
Confidence 58899999999999999976654 55555555677 321 11234555567788889999999754 699
Q ss_pred ccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCc
Q 013441 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGS 215 (443)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 215 (443)
||+..+.+ +| .....|.++-.+|+++. .| ++........|.
T Consensus 84 qS~v~~~~-----eL---~~il~~~t~~g~L~R~~----------~~--------K~k~~~~~~~~~------------- 124 (332)
T PRK12556 84 QSDVPEIF-----EL---AWILSCLTPKGLMNRAH----------AY--------KAKVDQNKEAGL------------- 124 (332)
T ss_pred CCCchHHH-----HH---HHHHHccchHHHHHhcc----------HH--------HHHHhhhhhhcc-------------
Confidence 99976432 22 23457888888887653 23 111000000000
Q ss_pred eeeee-cccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC------CCCC
Q 013441 216 LKISD-LIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMP 288 (443)
Q Consensus 216 ~~~~D-~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg------~~~P 288 (443)
.+++ .-.|...++.-+..|. .+.+.++|.-|.|....--.-.-+.+.|+ ++.|
T Consensus 125 -~~~~~~~~gll~YPvLqAADI-------------------l~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P 184 (332)
T PRK12556 125 -DLDAGVNMGLYTYPILMAADI-------------------LLFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP 184 (332)
T ss_pred -ccCCCCcchhhhchHHHhhhh-------------------hhccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc
Confidence 0111 1113333332222232 24466788999997432222223334455 5667
Q ss_pred cEE---EeeceecCCCceecccCCCC-ChHHHHHCCCCHHHHHHHHHHh--CCC---CCCCCcccCHHHHHhcccccccc
Q 013441 289 YFA---HVSLILAPDRSKLSKRHGAT-SVGQFREMGYLPQAMVNYLALL--GWG---DGTENEFFTLKQLVEKFTIERVN 359 (443)
Q Consensus 289 ~f~---Hlplil~~dg~KLSKR~g~~-si~~~r~~G~~peai~n~l~~L--G~~---~~~~~e~~s~~eli~~F~l~~v~ 359 (443)
... |.+++.+.+|+||||+.++. .|. -.|+.|..-+... +-. .+...+...+-++...|.
T Consensus 185 ~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~------D~p~~I~kKI~ka~Td~~~~~~~~~p~~~~l~~i~~~~~----- 253 (332)
T PRK12556 185 EYVIQEEGAILPGLDGRKMSKSYGNVIPLF------AEQEKLRKLIFKIKTDSSLPNEPKDPETSALFTIYKEFA----- 253 (332)
T ss_pred eeccccccccccCCCCCCCCCCCCCccccc------CCHHHHHHHHHHhccCCCcccCCCCcchhHHHHHHHHHC-----
Confidence 554 78888999999999999753 232 2688887766543 111 122344555666666653
Q ss_pred CCCccccHHHHHHHHHHHHhcCChhH
Q 013441 360 KSGAIFDSTKLRWMNGQHLRAIPSNE 385 (443)
Q Consensus 360 ~~~~~fd~~kL~~~n~~~l~~~~~~~ 385 (443)
+.+.+..+...|-..+...+
T Consensus 254 ------~~~~~eei~~~y~~~~~~~~ 273 (332)
T PRK12556 254 ------TEEEVQSMREKYETGIGWGD 273 (332)
T ss_pred ------CchhHHHHHHHHhcCCChHH
Confidence 22446677777754444333
No 68
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.11 E-value=8.2e-11 Score=120.21 Aligned_cols=237 Identities=18% Similarity=0.226 Sum_probs=118.5
Q ss_pred CCceEEEeCCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcccCc------------------------
Q 013441 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLERST------------------------ 103 (443)
Q Consensus 53 ~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~~R~~------------------------ 103 (443)
+..+++--.-||+|..||||+|-.+..++.+|. ...++|+-.||.|+-|.+
T Consensus 22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence 467888888899999999999999988888874 346799999999975543
Q ss_pred -------HHHHHHHHHHHHHcCCCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHH
Q 013441 104 -------KESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAK 174 (443)
Q Consensus 104 -------~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~ 174 (443)
+.+...+.+.|..+|++++ .++|++ +...|.+.+...+++ +++|.+.-..-.
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie~e----------~~s~te~Y~sG~y~~~i~~aL~~---------~~~I~~Il~~~~ 162 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIEYE----------FISQTEMYRSGRYDEQIRTALEN---------RDEIREILNEYR 162 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT---E----------EEECCCCCCTTTTHHHHCHHHHT---------HHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHcCCceE----------EEeHHHhhhCCchHHHHHHHHHh---------HHHHHHHHHHhc
Confidence 4577788999999999875 478887 456888888888876 455543222111
Q ss_pred hCCCCCC------CCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceeeeecccc---eeeecCCCCCCeEEEecCCcc
Q 013441 175 LKQLPPV------YTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRG---EVSWNLDTLGDFVIMRSNGQP 245 (443)
Q Consensus 175 ~~~~~~~------Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G---~i~~~~~~~~D~VL~RsDG~P 245 (443)
.+..+.. +...|..... ..++.+.. ..+.+.+.+.--| ++.... .+|.-
T Consensus 163 ~~~~~~~y~Pf~piC~~cGri~t-----------t~v~~~d~-~~~~v~Y~c~~cG~~g~~~i~~----------g~gKL 220 (360)
T PF01921_consen 163 GRERPETYSPFLPICEKCGRIDT-----------TEVTEYDP-EGGTVTYRCEECGHEGEVDITG----------GNGKL 220 (360)
T ss_dssp HHT--TT--SEEEEETTTEE--E-----------EEEEEE---SSSEEEEE--TTS---EEETTT----------T-EEE
T ss_pred CcCCCCCeeeeeeeccccCCccc-----------ceeeEeec-CCCEEEEEecCCCCEEEEecCC----------Ccccc
Confidence 1112222 2334432110 00111111 1123333331111 111110 11222
Q ss_pred ccchhh-hhhcccCCcceEEecCCCCC---CHHHHHHHH-HHcCCCCCcEEEeeceecCCCceecccCCC-CChHHHHHC
Q 013441 246 VYNFCV-TVDDATMAISHVIRAEEHLP---NTLRQALIY-KALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREM 319 (443)
Q Consensus 246 tY~fA~-vVDD~~m~ITHVIRG~D~l~---ntp~q~~ly-~aLg~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~ 319 (443)
.|-.-= .-.. ..+|+.=--|.||.+ |...-..|. +.||+++|...-..+++...|+||||++|+ .|+++..+-
T Consensus 221 ~WkvDW~mRW~-~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~ 299 (360)
T PF01921_consen 221 QWKVDWPMRWA-ALGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGNGITPEEWLEY 299 (360)
T ss_dssp -HHHHHHHHHH-HTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES--------------HHHHHTT
T ss_pred cCCCcChhhhh-hcCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCCccCHHHHHHh
Confidence 221111 1112 237776677999998 777777888 889999999999999999888899999998 589888776
Q ss_pred CCCHHHHHHHHHH
Q 013441 320 GYLPQAMVNYLAL 332 (443)
Q Consensus 320 G~~peai~n~l~~ 332 (443)
+.||.|+.++..
T Consensus 300 -~~PE~lr~l~~~ 311 (360)
T PF01921_consen 300 -APPESLRYLMAR 311 (360)
T ss_dssp -S-HHHHHHHHHC
T ss_pred -cCHHHHHHHHcc
Confidence 488887766643
No 69
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=99.10 E-value=1.1e-09 Score=111.68 Aligned_cols=191 Identities=16% Similarity=0.178 Sum_probs=120.4
Q ss_pred CCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc----cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 013441 62 PSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE----RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (443)
Q Consensus 62 PSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~~----R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gp 133 (443)
-.|||.+||||+.+++.+|..- +.|...++-|-| |+.. .......+.+..++..+|+++|... .
T Consensus 9 ~~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~-------i 80 (328)
T TIGR00233 9 IQPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTF-------I 80 (328)
T ss_pred eCCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheE-------E
Confidence 4689999999999999999877 567777777777 4322 2345566677888999999998764 6
Q ss_pred eeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 013441 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (443)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 213 (443)
|.||+..+ +.+-. ...-|.+|-.+++++ +.|..+ . .+
T Consensus 81 f~qS~~~e----~~el~----~~l~~~~t~~~l~r~----------~~~k~k--------~-----~~------------ 117 (328)
T TIGR00233 81 FLQSDYPE----HYELA----WLLSCQVTFGELKRM----------TQFKDK--------S-----QA------------ 117 (328)
T ss_pred EEcCCcHH----HHHHH----HHHHccCCHHHHHhc----------cCcchh--------c-----cC------------
Confidence 89999874 22222 224577777777543 223110 0 00
Q ss_pred CceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC------CCC
Q 013441 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSM 287 (443)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg------~~~ 287 (443)
.+.-.|. .+|-.--+.|=.+.+.++|.-|.|....--.-..+.+.|| +..
T Consensus 118 -----~~~~~g~-------------------l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~ 173 (328)
T TIGR00233 118 -----ENVPIGL-------------------FSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPK 173 (328)
T ss_pred -----CCCCchh-------------------hcchHHHHhhhhhcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCC
Confidence 0001122 2232222333334467788999997533222234456677 777
Q ss_pred CcEEEe---eceecCCCceecccCCCC--ChHHHHHCCCCHHHHHHHHHHh
Q 013441 288 PYFAHV---SLILAPDRSKLSKRHGAT--SVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 288 P~f~Hl---plil~~dg~KLSKR~g~~--si~~~r~~G~~peai~n~l~~L 333 (443)
|...|. |.|.+.+|+||||++++. .|.+ .|+.|..-+...
T Consensus 174 P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D------~~e~I~~KI~~a 218 (328)
T TIGR00233 174 PESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD------TPKQIKKKIRKA 218 (328)
T ss_pred ChhhhccccCCCCCCCCCcCCCCCCCCeEeecC------CHHHHHHHHHhc
Confidence 876663 668888889999999863 3322 788888887654
No 70
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.07 E-value=1.6e-09 Score=111.85 Aligned_cols=198 Identities=19% Similarity=0.175 Sum_probs=121.0
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCC----Ccc---cCcHHHHHHHHHHHHHcCCCCCCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT----DLE---RSTKESEEAVLQDLSWLGLDWDEGPGV 127 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDT----D~~---R~~~~~~~~I~~dL~wLGl~wDegp~~ 127 (443)
+.++=..-.|||.+||||+. ++.+|..-+..|...++-|.|. +.. ....+....++.++.++|++++...
T Consensus 66 ~~~iytG~~PSG~lHLGh~~-~~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~-- 142 (368)
T PRK12285 66 PFAVYTGFMPSGPMHIGHKM-VFDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTE-- 142 (368)
T ss_pred CeEEEEccCCCCCccHHHHH-HHHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceE--
Confidence 44444445667999999986 5666666666788888888883 321 2234555567889999999998754
Q ss_pred CCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEE
Q 013441 128 GGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYR 207 (443)
Q Consensus 128 gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR 207 (443)
.|.||+..+ |.+.+-.| .|.+|-.+++++ ..|..
T Consensus 143 -----i~~qS~~~~-~~~l~~~l-------~~~~t~~~l~r~----------~~f~~----------------------- 176 (368)
T PRK12285 143 -----IYFQSENIK-VYDLAFEL-------AKKVNFSELKAI----------YGFTG----------------------- 176 (368)
T ss_pred -----EEECCchHH-HHHHHHHH-------HhhCcHHHHHHh----------hCCCC-----------------------
Confidence 689999876 33443333 455566665432 01100
Q ss_pred EecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHc----
Q 013441 208 FRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL---- 283 (443)
Q Consensus 208 ~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aL---- 283 (443)
+.--|.+.++.-+..|..+...++ ...-++|.-|.|....--.-.-+.+.|
T Consensus 177 ------------~~~~g~~~YP~lQaADil~~~~~~-------------~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~ 231 (368)
T PRK12285 177 ------------ETNIGHIFYPATQAADILHPQLEE-------------GPKPTLVPVGIDQDPHIRLTRDIAERLHGGY 231 (368)
T ss_pred ------------CCchhhhhhhHHHHHHHHhhcccc-------------cCCceEEEeccchHHHHHHHHHHHHHHhhhc
Confidence 000122222221222222211111 135678888998743322223445666
Q ss_pred CCCCCcEEEeeceecCCCceecccCCCC--ChHHHHHCCCCHHHHHHHHHH
Q 013441 284 GFSMPYFAHVSLILAPDRSKLSKRHGAT--SVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 284 g~~~P~f~Hlplil~~dg~KLSKR~g~~--si~~~r~~G~~peai~n~l~~ 332 (443)
|++.|.-.|.+++.+.+|+||||+.... .+.+ .|+.|.+-+..
T Consensus 232 gf~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L~D------~p~~I~kKI~k 276 (368)
T PRK12285 232 GFIKPSSTYHKFMPGLTGGKMSSSKPESAIYLTD------DPETVKKKIMK 276 (368)
T ss_pred CCCCchhHhhhcccCCCCCcCCCCCCCCeeeccC------CHHHHHHHHHh
Confidence 9999998888999999999999998543 3322 78888888865
No 71
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.07 E-value=7.8e-09 Score=110.98 Aligned_cols=236 Identities=18% Similarity=0.253 Sum_probs=134.4
Q ss_pred CceEEEeCCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcccCcHH-----------------------
Q 013441 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLERSTKE----------------------- 105 (443)
Q Consensus 54 ~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~~R~~~~----------------------- 105 (443)
.++++-=+-+|+|.+||||++..+..+.++|. +.-+||.--||-|+-|.++.
T Consensus 18 ~~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~ 97 (515)
T TIGR00467 18 NLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC 97 (515)
T ss_pred CeEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence 36778888899999999999999888777774 56778888899988776533
Q ss_pred -------HHHHHHHHHHHcCCCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhC
Q 013441 106 -------SEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLK 176 (443)
Q Consensus 106 -------~~~~I~~dL~wLGl~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~ 176 (443)
+...+.++|.-||++++ .++||| +...|.+.+...+++ +++|.+.=..-..+
T Consensus 98 ~~s~~~h~~~~~~~~l~~~gi~~e----------~~s~te~Y~sG~~~~~i~~~L~~---------~~~I~~il~~~~~~ 158 (515)
T TIGR00467 98 KTSYAEHFLIPFLESLPVLGINPE----------FIRASKQYTSGLYASQIKIALDH---------RKEISEILNEYRTS 158 (515)
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEE----------EEEHHHhhhcCChHHHHHHHHHh---------HHHHHHHHHHhcCC
Confidence 44466777777887664 366666 334666666666654 34443322111111
Q ss_pred CCCCC------CCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchh
Q 013441 177 QLPPV------YTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFC 250 (443)
Q Consensus 177 ~~~~~------Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA 250 (443)
..+.. ++..|..... .+.+. . ... +|+++.. .|.-...|...|.. ..-||-|=---|
T Consensus 159 ~~~~~~~P~~pic~~cGrv~~-~~~~~-~-~~~-~v~Y~c~-cG~~g~~~~~~g~~---------KL~WkvdW~~RW--- 221 (515)
T TIGR00467 159 KLEENWYPISVFCENCGRDTT-TVNNY-D-NEY-SIEYSCE-CGNQESVDIYTGAI---------KLPWRVDWPARW--- 221 (515)
T ss_pred ccCCCceeeeeecCCcCccCc-eEEEe-c-CCc-eEEEEcC-CCCEEEEeecCCCc---------ccCCCCCcHhhH---
Confidence 12221 3445543321 11111 1 111 3444332 12211122211111 112222211111
Q ss_pred hhhhcccCCcceEEecCCCCCCH---HHHHHHH-HHcCCCCCcEEEeece-ecCCCceecccCCC-CChHHHHHCCCCHH
Q 013441 251 VTVDDATMAISHVIRAEEHLPNT---LRQALIY-KALGFSMPYFAHVSLI-LAPDRSKLSKRHGA-TSVGQFREMGYLPQ 324 (443)
Q Consensus 251 ~vVDD~~m~ITHVIRG~D~l~nt---p~q~~ly-~aLg~~~P~f~Hlpli-l~~dg~KLSKR~g~-~si~~~r~~G~~pe 324 (443)
. ..||+.=-=|.||..+. .....+. ++||.++|...-.-++ +..+|.|||||.|+ .+++++.+. +.|+
T Consensus 222 ----~-~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~-~~pd 295 (515)
T TIGR00467 222 ----K-IEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGDVISVKDVLEV-YTPE 295 (515)
T ss_pred ----h-hhCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCCCccHHHHHHH-cCHH
Confidence 1 12555445588887633 2333333 6999888853333333 55678899999998 599999888 8999
Q ss_pred HHHHHHH
Q 013441 325 AMVNYLA 331 (443)
Q Consensus 325 ai~n~l~ 331 (443)
+++.|+.
T Consensus 296 alR~~~l 302 (515)
T TIGR00467 296 ITRFLFA 302 (515)
T ss_pred HHHHHHh
Confidence 9988754
No 72
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.96 E-value=1.2e-08 Score=106.81 Aligned_cols=222 Identities=19% Similarity=0.227 Sum_probs=127.9
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH-cCCeEEEEecC----CCc--ccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS-KGGKFVLRIED----TDL--ERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~-~gG~fiLRIED----TD~--~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gp 133 (443)
.-.|||.+||||..+|+-||+.... .|...++-|-| |+. ..........+..++..+||+|+... .
T Consensus 8 GiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~-------i 80 (431)
T PRK12284 8 GITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVT-------F 80 (431)
T ss_pred EecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceE-------E
Confidence 3469999999999999999998864 45566666777 321 12334455567888999999999764 6
Q ss_pred eeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 013441 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (443)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 213 (443)
|+||+-.+. .+ -.+...|.++..+|+++. .| ++........|.. +.
T Consensus 81 f~QSdvpeh-~E-------L~wiL~~it~~g~L~Rm~----------q~--------K~k~~~~~~~g~~-------~~- 126 (431)
T PRK12284 81 YRQSDIPEI-PE-------LTWLLTCVAGKGLLNRAH----------AY--------KAAVDKNVAAGED-------PD- 126 (431)
T ss_pred EECCcchhH-HH-------HHHHHHhhhhHHHHHhhh----------HH--------HHHHHhhhccccC-------cc-
Confidence 999996632 22 234456888888888763 23 1111110001100 00
Q ss_pred CceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC-------CC
Q 013441 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG-------FS 286 (443)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg-------~~ 286 (443)
++.-. |..+|=.=-+.|=.+.+.+||-=|+|-...--.=.-|.+.|+ ++
T Consensus 127 -----~~i~~-------------------Gll~YPvLqAADILly~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~ 182 (431)
T PRK12284 127 -----AGVTA-------------------GLFMYPVLMAADILMFNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFV 182 (431)
T ss_pred -----cCcch-------------------HHhhchHHHHhhhhhcCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccC
Confidence 00111 233333222333334467778888886421111112223333 22
Q ss_pred CCc--E-EEeeceecCCCceecccCCCC-ChHHHHHCCCCHHHHHHHHHHhCC-----CCCCCCcccCHHHHHhcc
Q 013441 287 MPY--F-AHVSLILAPDRSKLSKRHGAT-SVGQFREMGYLPQAMVNYLALLGW-----GDGTENEFFTLKQLVEKF 353 (443)
Q Consensus 287 ~P~--f-~Hlplil~~dg~KLSKR~g~~-si~~~r~~G~~peai~n~l~~LG~-----~~~~~~e~~s~~eli~~F 353 (443)
.|. . .|.+.|++.+|+||||+.+++ .|.+ .|+.|..-+...=. .++...|..++-++.+.|
T Consensus 183 ~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~I~kKI~~A~TDs~~~~~~~~pe~snLl~i~~~~ 252 (431)
T PRK12284 183 LPEAVIEESVATLPGLDGRKMSKSYDNTIPLFA------PREELKKAIFSIVTDSRAPGEPKDTEGSALFQLYQAF 252 (431)
T ss_pred CCccccccccccccCCCCccccCCCCCEeeecC------CHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHh
Confidence 342 2 357889999999999999753 3321 67788777754311 122345566677777766
No 73
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=98.94 E-value=3.8e-08 Score=111.94 Aligned_cols=94 Identities=27% Similarity=0.369 Sum_probs=70.9
Q ss_pred eEEEe-CCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc------------------c-------------
Q 013441 56 VRVRF-APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE------------------R------------- 101 (443)
Q Consensus 56 vr~RF-APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~------------------R------------- 101 (443)
+.+=. +|.+||.|||||+++.++...+||. ..|.-++.+-.+|.. +
T Consensus 35 f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~ 114 (861)
T TIGR00422 35 FCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIW 114 (861)
T ss_pred EEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHH
Confidence 33333 5799999999999999999999985 689999999888841 1
Q ss_pred -CcHHHHHHHHHHHHHcCCC--CCCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeee
Q 013441 102 -STKESEEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 102 -~~~~~~~~I~~dL~wLGl~--wDegp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (443)
-+.++.+.|.+.++.||+. |+. +|+-. ++...-+....+|-++|.+|+
T Consensus 115 ~~~~~~~~~~~~~~~~lG~s~Dw~r---------~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 115 EWKEESGGTIKNQIKRLGASLDWSR---------ERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHHHHHHHHHhCeeeecCC---------CcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 0356778999999999955 543 33333 244555667778999999998
No 74
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=98.87 E-value=5e-08 Score=99.71 Aligned_cols=229 Identities=18% Similarity=0.224 Sum_probs=134.0
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC---CCc---ccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceec
Q 013441 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED---TDL---ERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED---TD~---~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~Q 136 (443)
.|||.+||||..+++.+|..-+..+..+++--|+ |+. .....++...+..++..+|++++... .|.|
T Consensus 10 ~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~-------i~~q 82 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKST-------IFIQ 82 (333)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeE-------EEEC
Confidence 4679999999999999998887777666554333 431 12345666677788889999998653 6889
Q ss_pred cccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCce
Q 013441 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSL 216 (443)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~ 216 (443)
|+..+.++ | .+.+.|.++-.++.++-. | ++... . +.
T Consensus 83 S~~~e~~~-----l---~~~l~~~~~~~~l~r~~~----------~------------k~~~~--~-----~~------- 118 (333)
T PRK12282 83 SQIPELAE-----L---TMYYMNLVTVARLERNPT----------V------------KTEIA--Q-----KG------- 118 (333)
T ss_pred CcchHHHH-----H---HHHHHhhchHHHHhhchH----------H------------HHHHh--c-----cC-------
Confidence 99865331 1 233677777777654321 1 00000 0 00
Q ss_pred eeee-cccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC--CCCCcEE--
Q 013441 217 KISD-LIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG--FSMPYFA-- 291 (443)
Q Consensus 217 ~~~D-~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg--~~~P~f~-- 291 (443)
+.+ .-- |..+|-.--+.|=.+.+.++|.-|.|....--.-..+.+.|| +..|.|.
T Consensus 119 -~~~~~~~-------------------g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p 178 (333)
T PRK12282 119 -FGRSIPA-------------------GFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEP 178 (333)
T ss_pred -CCCCCcc-------------------hhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCc
Confidence 000 001 233333333333344577899999997532222223445566 3323332
Q ss_pred -----EeeceecCCC-ceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCC--------CCCCCcccCHHHHHhccccc
Q 013441 292 -----HVSLILAPDR-SKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWG--------DGTENEFFTLKQLVEKFTIE 356 (443)
Q Consensus 292 -----Hlplil~~dg-~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~--------~~~~~e~~s~~eli~~F~l~ 356 (443)
|.|+|.+.+| +||||+.++ ..|.+ .|+.|...+... .+ ++...+...+-++++.|+.
T Consensus 179 ~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D------~pe~I~kKI~~A-~td~~~~~~~~~~~~~~~~l~~~~~~f~~- 250 (333)
T PRK12282 179 EALLPEAGRLPGLDGKAKMSKSLGNAIYLSD------DADTIKKKVMSM-YTDPNHIRVEDPGKVEGNVVFTYLDAFDP- 250 (333)
T ss_pred hhcccCCCcccCCCCCCcCCCCCCCeeeeeC------CHHHHHHHHHhC-cCCCCCccCCCCCCCCcChHHHHHHHhCC-
Confidence 5678888887 799999975 23322 788888877652 22 2334455667777777631
Q ss_pred cccCCCccccHHHHHHHHHHHHh
Q 013441 357 RVNKSGAIFDSTKLRWMNGQHLR 379 (443)
Q Consensus 357 ~v~~~~~~fd~~kL~~~n~~~l~ 379 (443)
+...+..+...|-.
T Consensus 251 ---------~~~~~e~l~~~y~~ 264 (333)
T PRK12282 251 ---------DKAEVAELKAHYQR 264 (333)
T ss_pred ---------CCchHHHHHHHHhc
Confidence 34445566666643
No 75
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=98.87 E-value=6.8e-08 Score=109.14 Aligned_cols=95 Identities=24% Similarity=0.332 Sum_probs=70.8
Q ss_pred ceEEEe-CCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc-----------------c------------cC
Q 013441 55 QVRVRF-APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL-----------------E------------RS 102 (443)
Q Consensus 55 ~vr~RF-APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~-----------------~------------R~ 102 (443)
++.+=. .|.|||.|||||+++.+....+||. ..|.-++.+-.+|. + .-
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 455555 6899999999999999999999985 57888888666662 1 12
Q ss_pred cHHHHHHHHHHHHHcCCC--CCCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeee
Q 013441 103 TKESEEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 103 ~~~~~~~I~~dL~wLGl~--wDegp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (443)
+.++.+.|.++++.||+. |+. +|+-+ ++...-+....+|.++|.+|+
T Consensus 119 ~~~~~~~~~~~~~~lg~s~Dw~~---------~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 169 (800)
T PRK13208 119 TDEDEKKFRELWRRLGLSVDWSL---------EYQTISPEYRRISQKSFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHHHHHHHHhCeeeccCC---------CcccCCHHHHHHHHHHHHHHHHCCCeee
Confidence 346788999999999985 544 23322 244455667778999999998
No 76
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=98.85 E-value=1.4e-07 Score=96.15 Aligned_cols=220 Identities=16% Similarity=0.156 Sum_probs=134.8
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCc---ccCcHHHHHHHHHHHHHcCCCCCCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDL---ERSTKESEEAVLQDLSWLGLDWDEGPGV 127 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~---~R~~~~~~~~I~~dL~wLGl~wDegp~~ 127 (443)
+.++=..-.|||.+||||+- ++.+|...+..|...++-|-| |+. ..........+..++..+|++++...
T Consensus 30 ~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~-- 106 (329)
T PRK08560 30 EPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTE-- 106 (329)
T ss_pred CCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheE--
Confidence 44454566789999999976 777787777778887777888 332 23456667788899999999988643
Q ss_pred CCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEE
Q 013441 128 GGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYR 207 (443)
Q Consensus 128 gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR 207 (443)
.+.||+-...- ++-..+.+ ..|.+|-.++.++... + |.
T Consensus 107 -----i~~qS~~~~~~-~~~~~~~~----l~~~~~~~~l~r~~~~---------~------------------~~----- 144 (329)
T PRK08560 107 -----FVLGSEFQLDK-EYWLLVLK----LAKNTTLARARRSMTI---------M------------------GR----- 144 (329)
T ss_pred -----EEecchhhccc-hHHHHHHH----HHhhccHHHHHHhhhh---------h------------------cc-----
Confidence 57899864321 12122221 2466666666543110 0 00
Q ss_pred EecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCC
Q 013441 208 FRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSM 287 (443)
Q Consensus 208 ~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~ 287 (443)
. . ++. +=|..+|-.--+.|=...+.++|+-|.|...+--.=..+.+.++...
T Consensus 145 ----~-~----~~~-------------------~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~~ 196 (329)
T PRK08560 145 ----R-M----EEP-------------------DVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYKK 196 (329)
T ss_pred ----c-C----CCC-------------------CHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCCC
Confidence 0 0 000 11223333333444445578899999997543333345567789888
Q ss_pred CcEEEeeceecCCCc--eecccC-CC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccc
Q 013441 288 PYFAHVSLILAPDRS--KLSKRH-GA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFT 354 (443)
Q Consensus 288 P~f~Hlplil~~dg~--KLSKR~-g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~ 354 (443)
|.-.+.|+|.+.+|. ||||+. ++ ..+.+ .|+.|.+-+... .+++...+.-.+-++.+.|.
T Consensus 197 p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D------~~~~I~~KI~kA-~t~~~~~~~n~v~~~~~~~~ 260 (329)
T PRK08560 197 PVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD------SPEEIRRKIKKA-YCPPGEVEGNPVLEIAKYHI 260 (329)
T ss_pred ceEEEcCccCCCCCCCCCCcCCCCCCeecccC------CHHHHHHHHHhc-cCCCCCcCCCcHHHHHHHHh
Confidence 988899999999987 999999 43 34432 788888877653 33333334444555555554
No 77
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.81 E-value=1e-07 Score=94.70 Aligned_cols=226 Identities=15% Similarity=0.140 Sum_probs=138.6
Q ss_pred CCCC-cCChhhHHHHHHHHHHHHHcCCeEEEEecC----C-Ccc-----c------CcHHHHHHHHHHHHHcCCC--CCC
Q 013441 63 SPTG-NLHVGGARTALFNYLFARSKGGKFVLRIED----T-DLE-----R------STKESEEAVLQDLSWLGLD--WDE 123 (443)
Q Consensus 63 SPTG-~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----T-D~~-----R------~~~~~~~~I~~dL~wLGl~--wDe 123 (443)
.||| .+||||+..++ ++..-...|...++-|-| | |+. | ...+....+..++..+|++ ++.
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 5889 99999999765 555555567777777777 2 331 2 2355667788999999996 544
Q ss_pred CCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCC
Q 013441 124 GPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTP 203 (443)
Q Consensus 124 gp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~ 203 (443)
- ..+.||+-... .+...+++ +-|+|+-.++.++-. + ..+...+.
T Consensus 87 ~-------~i~~~s~~~~~--l~~~~~l~----l~~~~~~~~l~~~~~----------~------------k~r~~~~~- 130 (269)
T cd00805 87 A-------KFVNNSDWLLS--LYTLDFLR----LGKHFTVNRMLRRDA----------V------------KVRLEEEE- 130 (269)
T ss_pred e-------EEEEchHhhcc--CCHHHHHH----HHhhCcHHHHHHHHH----------H------------HHHHhcCC-
Confidence 3 26889886543 11222222 557777777754321 1 01100000
Q ss_pred ceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHc
Q 013441 204 YTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL 283 (443)
Q Consensus 204 ~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aL 283 (443)
. +-.|.. +|-.--+.|=...+.++|+-|.|...+--....+.+-+
T Consensus 131 -----------~-----~~~~~~-------------------~YP~lQaaDi~~l~~~l~~~G~DQ~~~i~~~rd~a~r~ 175 (269)
T cd00805 131 -----------G-----ISFSEF-------------------IYPLLQAYDFVYLDVDLQLGGSDQRGNITLGRDLIRKL 175 (269)
T ss_pred -----------C-----CcHHHH-------------------HHHHHHHhhHHHHhCCeeEecHHHHHHHHHHHHHHHHh
Confidence 0 001111 22222222222345588999999877766667777889
Q ss_pred CCCCCcEEEeeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCc
Q 013441 284 GFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGA 363 (443)
Q Consensus 284 g~~~P~f~Hlplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~ 363 (443)
++..|.-.|.|+|.+.+|+||||+.+++.- .+. --.|+.|.+++...= + + ...++++.|.+
T Consensus 176 ~~~~~~~l~~~ll~~l~G~KMSKS~~~~~~-i~l--~dsp~~i~~Ki~~a~----~-~---~v~~~l~~~~~-------- 236 (269)
T cd00805 176 GYKKVVGLTTPLLTGLDGGKMSKSEGNAIW-DPV--LDSPYDVYQKIRNAF----D-P---DVLEFLKLFTF-------- 236 (269)
T ss_pred CCCCcEEEeeccccCCCCCcccCCCCCccc-ccC--CCCHHHHHHHHHcCC----c-H---HHHHHHHHHHc--------
Confidence 998888889999999999999999987531 111 137889888886531 1 1 24566666654
Q ss_pred cccHHHHHHHHHHHHhc
Q 013441 364 IFDSTKLRWMNGQHLRA 380 (443)
Q Consensus 364 ~fd~~kL~~~n~~~l~~ 380 (443)
++.+++..+..+|...
T Consensus 237 -~~~~~~eel~~~~~~~ 252 (269)
T cd00805 237 -LDYEEIEELEEEHAEG 252 (269)
T ss_pred -CCHHHHHHHHHHHhcC
Confidence 3466677777777543
No 78
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.81 E-value=2.2e-07 Score=92.45 Aligned_cols=228 Identities=13% Similarity=0.173 Sum_probs=131.4
Q ss_pred CCCC-cCChhhHHHHHHHHHHHHHcCCeEEEEecC----C-Cc-----------ccCcHHHHHHHHHHHHHcCCC--CCC
Q 013441 63 SPTG-NLHVGGARTALFNYLFARSKGGKFVLRIED----T-DL-----------ERSTKESEEAVLQDLSWLGLD--WDE 123 (443)
Q Consensus 63 SPTG-~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----T-D~-----------~R~~~~~~~~I~~dL~wLGl~--wDe 123 (443)
-||| .|||||+.. +.++..-+..|.+.++-|-| | |+ .....+..+.+..++..+|++ ++.
T Consensus 7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k 85 (273)
T cd00395 7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQ 85 (273)
T ss_pred cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 4889 799999998 77777777767666665655 2 33 122345666788889999998 443
Q ss_pred CCCCCCCCCceeccccHHH--HHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcC
Q 013441 124 GPGVGGDYGPYRQSERNSL--YKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERG 201 (443)
Q Consensus 124 gp~~gg~~gpy~QSer~~~--Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g 201 (443)
. -.|.||+-... |.+.+.. +-|.++-.++.++- .+..++..|
T Consensus 86 ~-------~i~~ns~~~~~~~~~~l~~~-------l~~~~~~~~l~~~~----------------------~~k~r~~~~ 129 (273)
T cd00395 86 A-------TLFNNSDWPGPLAHIQFLRD-------LGKHVYVNYMERKT----------------------SFQSRSEEG 129 (273)
T ss_pred e-------EEEEccccCCcccHHHHHHH-------HHccCcHHHHHhCh----------------------HHHHHhcCC
Confidence 2 26889987631 2233222 23444555554321 011111001
Q ss_pred CCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHH
Q 013441 202 TPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYK 281 (443)
Q Consensus 202 ~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~ 281 (443)
.-.|.+.++.-+.-|+..+ +...+.++|+-|.|-..+--.=..+.+
T Consensus 130 -------------------~~~~~~~Yp~lQaaD~l~l---------------~~~~~~~~vp~G~DQ~~~i~l~rdla~ 175 (273)
T cd00395 130 -------------------ISATEFTYPPLQAADFLLL---------------NTTEGCDIQPGGSDQWGNITLGRELAR 175 (273)
T ss_pred -------------------CCchhhhhHHHHHHHHHHH---------------hcccCCcEEEecHHHHHHHHHHHHHHH
Confidence 0112222222222232211 112467999999998765544455667
Q ss_pred HcC-CCCCcEEEeeceecCCCceecccCCCCC-hHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhcccccccc
Q 013441 282 ALG-FSMPYFAHVSLILAPDRSKLSKRHGATS-VGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVN 359 (443)
Q Consensus 282 aLg-~~~P~f~Hlplil~~dg~KLSKR~g~~s-i~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~ 359 (443)
.++ ++.|.-.+.|+|.+.+|.||||+.+++. +..+ --.|+.+.+++...- .-.+.++.+.|..
T Consensus 176 r~n~~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l~~~---~dsp~~i~~ki~~a~--------d~~v~~~~~~~t~---- 240 (273)
T cd00395 176 RFNGFTIAEGLTIPLVTKLDGPKFGKSESGPKWLDTE---KTSPYEFYQFWINAV--------DSDVINILKYFTF---- 240 (273)
T ss_pred HhCCCCCCeEEeeccccCCCCCcCCCCCCCCcccccc---CCCHHHHHHHHHccc--------HhHHHHHHHHHcC----
Confidence 774 6788878889999999999999998752 2211 137888888886542 1123444455542
Q ss_pred CCCccccHHHHHHHHHHHHhcC
Q 013441 360 KSGAIFDSTKLRWMNGQHLRAI 381 (443)
Q Consensus 360 ~~~~~fd~~kL~~~n~~~l~~~ 381 (443)
.+.+++..+-.++.+..
T Consensus 241 -----~~~~ei~~i~~~~~~~~ 257 (273)
T cd00395 241 -----LSKEEIERLEQEQYEAP 257 (273)
T ss_pred -----CCHHHHHHHHHHHhcCC
Confidence 24566665555555443
No 79
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.81 E-value=8.3e-08 Score=99.63 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=66.7
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc---cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcee
Q 013441 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE---RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~~---R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~ 135 (443)
-|||.+||||..+++-+|+.- +.+++.++-|-| |+.. ....+....+..++..+||+++... .|.
T Consensus 10 qPSG~~HLGnylG~ik~wv~l-q~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~-------if~ 81 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWVKL-QHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQAT-------LFI 81 (398)
T ss_pred CCCCcchHHHHHHHHHHHHHH-hcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceE-------EEE
Confidence 588999999999999999854 446666666777 4432 3445666778899999999998764 689
Q ss_pred ccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHH
Q 013441 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKM 169 (443)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~ 169 (443)
||+-.+. -+..+.+.|.++-.+|.++
T Consensus 82 QS~v~eh--------~eL~wil~~~t~~~~L~R~ 107 (398)
T PRK12283 82 QSKVPEH--------AELHLLLSMITPLGWLERV 107 (398)
T ss_pred CCCchHH--------HHHHHHHHhhccHHHHHhh
Confidence 9997522 2233567888888877654
No 80
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.59 E-value=7.4e-07 Score=91.13 Aligned_cols=192 Identities=19% Similarity=0.215 Sum_probs=111.9
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceec
Q 013441 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE--RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~~--R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~Q 136 (443)
.|||.+||||+..++.+|..-+.. ...++-|-| |+.. ....+....+..++..+|++++... .|.|
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~-------if~q 80 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKST-------IFVQ 80 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheE-------EEEe
Confidence 588999999999999988655553 455555676 4432 2334555677888889999998753 6899
Q ss_pred cccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCce
Q 013441 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSL 216 (443)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~ 216 (443)
|+-... .+.+-. ..|+.+-.+|+++- .|. ++.... +.
T Consensus 81 S~~~~~-~el~~~-------l~~~~~~~~l~r~~----------~~k------------~~~~~~-----------~~-- 117 (333)
T PRK00927 81 SHVPEH-AELAWI-------LNCITPLGELERMT----------QFK------------DKSAKQ-----------KE-- 117 (333)
T ss_pred CCCchh-HHHHHH-------HHhhhhHHHHHhhh----------hHH------------HHHhcc-----------CC--
Confidence 986543 222222 34555666665431 120 000000 00
Q ss_pred eeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC------CCCCcE
Q 013441 217 KISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMPYF 290 (443)
Q Consensus 217 ~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg------~~~P~f 290 (443)
+.-- |..+|-.--+.|=...+.++|.-|.|....--.-..+.+.|+ ++.|..
T Consensus 118 ---~~~~-------------------g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~ 175 (333)
T PRK00927 118 ---NVSA-------------------GLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEP 175 (333)
T ss_pred ---CCCc-------------------HhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCChh
Confidence 0001 222332222333334578899999997533222234445555 246654
Q ss_pred EE---eeceecCCCc--eecccCCC----CChHHHHHCCCCHHHHHHHHHHh
Q 013441 291 AH---VSLILAPDRS--KLSKRHGA----TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 291 ~H---lplil~~dg~--KLSKR~g~----~si~~~r~~G~~peai~n~l~~L 333 (443)
.| .|+|.+.+|. ||||+.++ ..+.+ .|+.|.+-+...
T Consensus 176 i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D------~~~~I~~KI~~a 221 (333)
T PRK00927 176 LIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD------DPKTIAKKIKKA 221 (333)
T ss_pred hhccccccccCCCCCCCCCCCCCCCCCCeEEeeC------CHHHHHHHHHhC
Confidence 44 3889998887 99999984 23322 788888877653
No 81
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=98.49 E-value=1.1e-05 Score=83.96 Aligned_cols=203 Identities=11% Similarity=0.090 Sum_probs=110.2
Q ss_pred CceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--c---CcHHHHHHHHHHHHHcCCCCCCC
Q 013441 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE--R---STKESEEAVLQDLSWLGLDWDEG 124 (443)
Q Consensus 54 ~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~~--R---~~~~~~~~I~~dL~wLGl~wDeg 124 (443)
.++++=-.-.|||.+||||...-..+|.--...|.+.++-|-| |+.+ + ........+..++..+|++++.-
T Consensus 65 ~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k~ 144 (383)
T PTZ00126 65 ERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDNV 144 (383)
T ss_pred CCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 4456666678899999999322212444445567888888888 3322 2 23455556778889999999864
Q ss_pred CCCCCCCCceeccccHHHHH-HHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCC
Q 013441 125 PGVGGDYGPYRQSERNSLYK-QYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTP 203 (443)
Q Consensus 125 p~~gg~~gpy~QSer~~~Y~-~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~ 203 (443)
. .++||+.....- .+-...+.-+..+ |-.++.+... + .+..
T Consensus 145 ~-------i~~qS~~v~~~~~l~w~~~~~la~~~----tl~r~~r~~~----------~-----------------~~r~ 186 (383)
T PTZ00126 145 R-------FLWASEEINKNPNDYWLRVMDIARSF----NITRIKRCSQ----------I-----------------MGRS 186 (383)
T ss_pred E-------EEECChhhhhhhHHHHHHHHHHhccC----CHHHHHhhhh----------h-----------------hccc
Confidence 3 688998432211 1111111111111 2233322110 0 0000
Q ss_pred ceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHc
Q 013441 204 YTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL 283 (443)
Q Consensus 204 ~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aL 283 (443)
.. .. .-- |..+|-.--+.|=...+.++|.-|.|...---.-..+.+.+
T Consensus 187 -------~~-~~-----~~~-------------------g~l~YP~LQaaDil~l~adivpvG~DQ~~~~~LaRdia~~~ 234 (383)
T PTZ00126 187 -------EG-DE-----QPC-------------------AQILYPCMQCADIFYLKADICQLGMDQRKVNMLAREYCDKK 234 (383)
T ss_pred -------cC-CC-----CCc-------------------hhhhhhHHHhhhhhccCCCEEEeCccHHHHHHHHHHHHHHh
Confidence 00 00 000 22233222233333446778888888631101113445778
Q ss_pred CC-CCCcEEEeeceecC-CC-ceecccCCCC--ChHHHHHCCCCHHHHHHHHHH
Q 013441 284 GF-SMPYFAHVSLILAP-DR-SKLSKRHGAT--SVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 284 g~-~~P~f~Hlplil~~-dg-~KLSKR~g~~--si~~~r~~G~~peai~n~l~~ 332 (443)
|. +.|...|.|+|.+. +| +||||+.++. .+.+ .|+.|.+.+..
T Consensus 235 ~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D------spe~I~kKI~k 282 (383)
T PTZ00126 235 KIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED------SEEDVNRKIKK 282 (383)
T ss_pred CCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC------CHHHHHHHHHh
Confidence 85 46777789999998 45 6999998763 3332 78888888866
No 82
>PLN02886 aminoacyl-tRNA ligase
Probab=98.41 E-value=1.3e-06 Score=90.67 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=75.8
Q ss_pred cceeeeecccccCCCCCCce---EEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--cCcHHHH
Q 013441 37 RRFSVAASLSTNTNKVDGQV---RVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE--RSTKESE 107 (443)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~v---r~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~~--R~~~~~~ 107 (443)
++-.++++++..+.++...+ ++=-.--|||.+||||...++.+|..-++ +...++-|-| |... ....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~ 103 (389)
T PLN02886 25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKAT 103 (389)
T ss_pred hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHH
Confidence 34445555555544443333 22233467899999999999999987765 5555566777 4321 2344555
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHH
Q 013441 108 EAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKM 169 (443)
Q Consensus 108 ~~I~~dL~wLGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~ 169 (443)
..+..++..+||+++... .|.||+..+. .+. .+.+.|.++-.+|+++
T Consensus 104 ~~~~a~~lA~GlDP~ks~-------if~QS~v~e~-~eL-------~wil~~~t~~g~L~R~ 150 (389)
T PLN02886 104 RSTAAIYLACGIDPSKAS-------VFVQSHVPAH-AEL-------MWLLSCSTPIGWLNKM 150 (389)
T ss_pred HHHHHHHHHcCcCccceE-------EEEeCCCchh-HHH-------HHHHHhhCcHHHHHhc
Confidence 667889999999998764 6899986532 222 2336788888888754
No 83
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=5.2e-06 Score=88.02 Aligned_cols=73 Identities=22% Similarity=0.260 Sum_probs=52.5
Q ss_pred CceEEEeCCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCC
Q 013441 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPG 126 (443)
Q Consensus 54 ~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~ 126 (443)
+++++--.-||+|..||||+|-.+..++.+|. ...++|---||.|+-|.++.+...-..-=+.||..-.+-|+
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPd 96 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPD 96 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCC
Confidence 67778888899999999999987777777764 56779999999999877654443211112346776666665
No 84
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=6.1e-06 Score=85.31 Aligned_cols=89 Identities=19% Similarity=0.277 Sum_probs=65.2
Q ss_pred CCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc------------ccCcHHHHHHHHHHH----HHcCCCCCCC
Q 013441 63 SPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL------------ERSTKESEEAVLQDL----SWLGLDWDEG 124 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~------------~R~~~~~~~~I~~dL----~wLGl~wDeg 124 (443)
.|+-..||||+.++|++..+||. ..|+-+.-+..||. -++-++..+.|-+.+ +-+||.++..
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F 128 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF 128 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence 67888999999999999999986 57888888899984 134445544443333 4569988763
Q ss_pred CCCCCCCCceeccccHHHHHHHHHHHHHcCCeee
Q 013441 125 PGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 125 p~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 158 (443)
. ...--.+...-+++-..+.++|..|.
T Consensus 129 I-------RTTdpkH~a~Vqefw~~~~knG~iy~ 155 (578)
T KOG0436|consen 129 I-------RTTDPKHEAIVQEFWARVFKNGDIYR 155 (578)
T ss_pred e-------ecCCchHHHHHHHHHHHHHhCCceee
Confidence 2 11222467788888899999999997
No 85
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=98.29 E-value=2.3e-05 Score=82.29 Aligned_cols=115 Identities=13% Similarity=0.156 Sum_probs=74.7
Q ss_pred CcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCC
Q 013441 259 AISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGD 337 (443)
Q Consensus 259 ~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~ 337 (443)
+++.++-|.|...|--.=..|.+-+|...+.-.+.|+|.+.+|+||||+.++ +.+. +.-..|+.+..++..+ +
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G~KMsKS~~naI~L~---d~~tsp~~i~qki~~~--~- 261 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEGNAVWLD---EEKTSPYEMYQKWMNI--S- 261 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCCCcccCCCCCceeCC---CCCCCHHHHHHHHhcC--C-
Confidence 7888888999776544445566778866544458899999999999999865 3443 2335788888888764 1
Q ss_pred CCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 013441 338 GTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGER 393 (443)
Q Consensus 338 ~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~~~~~~l~~~~~~~ 393 (443)
+. .+..+++.|.. ++.+++..+-..|.......++-+.+...
T Consensus 262 --D~---~v~~~l~~~t~---------~~~~ei~~l~~~~~~g~~~~~~Kk~LA~~ 303 (408)
T PRK05912 262 --DA---DVWRYLKLLTF---------LSLEEIEELEEELAEGPNPREAKKVLAEE 303 (408)
T ss_pred --hH---HHHHHHHHHhc---------CCHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 11 24555666643 46677777777775544444444444333
No 86
>PLN02486 aminoacyl-tRNA ligase
Probab=98.26 E-value=9e-05 Score=77.25 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=52.1
Q ss_pred ceEEEeCCCCCC-cCChhhHHHHHHHHHHHHHcCCeEEEEecCC----Ccc---cCcHHHHHHHHHHHHHcCCCCCCCCC
Q 013441 55 QVRVRFAPSPTG-NLHVGGARTALFNYLFARSKGGKFVLRIEDT----DLE---RSTKESEEAVLQDLSWLGLDWDEGPG 126 (443)
Q Consensus 55 ~vr~RFAPSPTG-~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDT----D~~---R~~~~~~~~I~~dL~wLGl~wDegp~ 126 (443)
++++=-.=.||| .|||||+-++++...+.+..|...++-|.|- ... ....++.....+++..+|++++..-
T Consensus 73 ~~~vYtG~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~- 151 (383)
T PLN02486 73 KFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTF- 151 (383)
T ss_pred CeEEEeCCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceE-
Confidence 444444457888 5999999999976555555567777778871 111 1223444667888889999987642
Q ss_pred CCCCCCceeccccH
Q 013441 127 VGGDYGPYRQSERN 140 (443)
Q Consensus 127 ~gg~~gpy~QSer~ 140 (443)
.|.+++..
T Consensus 152 ------I~s~~~~~ 159 (383)
T PLN02486 152 ------IFSDFDYV 159 (383)
T ss_pred ------EEeccHHH
Confidence 56676655
No 87
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=98.25 E-value=5.5e-05 Score=79.58 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=71.8
Q ss_pred CcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCC
Q 013441 259 AISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGD 337 (443)
Q Consensus 259 ~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~ 337 (443)
+++.++-|.|...|--.=+.|.+.+|...|.-.+.|+|.+.+|+||||+.++ +.+. +.-..|+.+.+++..+ +
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~naI~L~---d~~tsp~~i~qki~~~--~- 259 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGAIWLD---PEKTSPYEFYQFWMNI--D- 259 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCceecc---CCCCCHHHHHHHHHcC--C-
Confidence 7888899999887766666777888988776668999999999999999885 3332 2224588888887643 1
Q ss_pred CCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhc
Q 013441 338 GTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRA 380 (443)
Q Consensus 338 ~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~ 380 (443)
+ -.+.+++..|.. .+.+++..+...|-..
T Consensus 260 ---D--~~v~~~l~~~t~---------l~~~ei~~l~~~~~~~ 288 (410)
T PRK13354 260 ---D--RDVVKYLKLFTD---------LSPDEIDELEAQLETE 288 (410)
T ss_pred ---h--HHHHHHHHHHhC---------CCHHHHHHHHHHHhcC
Confidence 1 113555666642 3667777777777654
No 88
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=98.17 E-value=4.1e-06 Score=83.79 Aligned_cols=198 Identities=20% Similarity=0.265 Sum_probs=120.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC-----CCcc----cCcHHHHHHHHHH--HHHcCCCCCCCCCCCC
Q 013441 61 APSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED-----TDLE----RSTKESEEAVLQD--LSWLGLDWDEGPGVGG 129 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED-----TD~~----R~~~~~~~~I~~d--L~wLGl~wDegp~~gg 129 (443)
.--|||.|||||+-. +.++...+..|.+.++-|-| .|+. |......+.+.++ +..+|++++...
T Consensus 11 G~~PTg~lHlG~l~~-~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~---- 85 (292)
T PF00579_consen 11 GIDPTGDLHLGHLVP-IMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTE---- 85 (292)
T ss_dssp EEESSSS-BHHHHHH-HHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEE----
T ss_pred eECCCCcccchHHHH-HHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceE----
Confidence 335789999997664 45566666699999988888 2333 4455666666776 788999987642
Q ss_pred CCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEe
Q 013441 130 DYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFR 209 (443)
Q Consensus 130 ~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k 209 (443)
.+.||+-.... ++...|.+ .++.-++.++... .++..++..|.
T Consensus 86 ---i~~~s~~~~~~-~~~~~l~~-------~~~~~~l~~~~~~-------------------~~~~~~~~~~~------- 128 (292)
T PF00579_consen 86 ---IFRQSDWPEHM-ELWWFLSD-------VARLFSLNRMLRF-------------------KDVKKRLKNGE------- 128 (292)
T ss_dssp ---EEEGHHHHCHH-HHHHHHHH-------HHBHHHHHHHHHH-------------------HHHHHHHSSTT-------
T ss_pred ---EEeCCCccccc-chhhhhcc-------cccccchhhhhhh-------------------ccccccccccc-------
Confidence 68899865444 44444433 3334455544321 11222222210
Q ss_pred cCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCC---
Q 013441 210 VPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFS--- 286 (443)
Q Consensus 210 ~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~--- 286 (443)
.+.+ |..+|-.--+.|=...+.++|+-|.|...+--.=..+.+.+|..
T Consensus 129 -----~~~~------------------------~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~ 179 (292)
T PF00579_consen 129 -----GISL------------------------GEFSYPLLQAADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIF 179 (292)
T ss_dssp -----TSBH------------------------HHHHHHHHHHHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTS
T ss_pred -----Ccce------------------------eeEEcccccccceeeeccccccccchHHHHHHHHHHHHhhhcccccc
Confidence 0000 11233333344444556668999999866544445666778877
Q ss_pred -CCcEEEeeceecCCCc-eecccCCCCChHHHHHCCCCHHHHHHHHHHh
Q 013441 287 -MPYFAHVSLILAPDRS-KLSKRHGATSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 287 -~P~f~Hlplil~~dg~-KLSKR~g~~si~~~r~~G~~peai~n~l~~L 333 (443)
.|...|.|++.+.+|. ||||++++.+| ++ -=.|+.+.+.+...
T Consensus 180 ~~p~~l~~~~l~~l~G~~KMSKS~~ns~I-~L---~d~~~~i~~Ki~~a 224 (292)
T PF00579_consen 180 PKPAGLTSPLLPGLDGQKKMSKSDPNSAI-FL---DDSPEEIRKKIKKA 224 (292)
T ss_dssp SS-EEEEETCBBSTTSSSBTTTTTTGGS--BT---TTTHHHHHHHHHHS
T ss_pred cCchheeeccccccCCccccCccCCccEE-EE---eccchhHHHHHHHH
Confidence 8999999999999999 99999998433 11 11577787777653
No 89
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=97.99 E-value=0.0005 Score=76.37 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=50.8
Q ss_pred ceEEEeCCCCCCcCChhhH-HHHHHHHHHHHHcCCeEEEEecC----CCcc--cCc---HHHHHHHHHHHHHcCCCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGA-RTALFNYLFARSKGGKFVLRIED----TDLE--RST---KESEEAVLQDLSWLGLDWDEG 124 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~-rtAL~n~l~Ar~~gG~fiLRIED----TD~~--R~~---~~~~~~I~~dL~wLGl~wDeg 124 (443)
++|+=..--|||.+||||. -.++-.|. .++.|...++-|-| |+.+ +.. ......+..++..+|++++.-
T Consensus 32 ~~rv~sGi~PTG~lHLGng~~~aik~~~-~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~ 110 (682)
T PTZ00348 32 LIRCYDGFEPSGRMHIAQGIFKAVNVNK-CTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 110 (682)
T ss_pred CCEEEEeeCCCCcCeeccHHHHHHHHHH-HHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 4455556678999999993 44554444 34677787777888 4322 122 223357888899999999864
Q ss_pred CCCCCCCCceeccc
Q 013441 125 PGVGGDYGPYRQSE 138 (443)
Q Consensus 125 p~~gg~~gpy~QSe 138 (443)
. .++||+
T Consensus 111 ~-------~~~qSd 117 (682)
T PTZ00348 111 L-------FLWSSE 117 (682)
T ss_pred E-------EEECcH
Confidence 3 588998
No 90
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.95 E-value=6.9e-05 Score=85.65 Aligned_cols=130 Identities=21% Similarity=0.312 Sum_probs=88.5
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------------------------------
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE--------------------------------- 100 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~--------------------------------- 100 (443)
+.+=-+|.|||.||+||+++.++..+++|. ..|.-++.+-..|..
T Consensus 39 ~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~ 118 (861)
T TIGR00392 39 IFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR 118 (861)
T ss_pred EEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence 455556899999999999999999999985 588888877776631
Q ss_pred cCcHHHHHHHHHHHHHcCC--CCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhC
Q 013441 101 RSTKESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLK 176 (443)
Q Consensus 101 R~~~~~~~~I~~dL~wLGl--~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~ 176 (443)
..+.++++.+.+.++.||+ +||. +|.-.+ ....-+....+|.++|.+|+..
T Consensus 119 ~~~~~~~~~~~~~~~~lG~~~dw~~---------~y~T~~p~y~~~~~~~f~~l~~~gliyr~~---------------- 173 (861)
T TIGR00392 119 EFALKQIEEQREQFQRLGVWGDWEN---------PYKTMDPSYEESQWWLFKEAHEKGLLYRGL---------------- 173 (861)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEeecc----------------
Confidence 1123567888999999998 7886 343333 2333344566899999999732
Q ss_pred CCCCCCCCcCC-CCCHHHHHHHH----hcCCCceEEEecC
Q 013441 177 QLPPVYTGKWA-TATDAEVQKEL----ERGTPYTYRFRVP 211 (443)
Q Consensus 177 ~~~~~Y~g~cr-~ls~~e~~~~~----~~g~~~~iR~k~~ 211 (443)
.+-.|+-.|. .|+..|++... ..+....++|++.
T Consensus 174 -~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~ 212 (861)
T TIGR00392 174 -KPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVK 212 (861)
T ss_pred -eeeecCCCcCCcccHHHHhcccccccccCceEEEEEEec
Confidence 1223566664 46777775432 1234455677763
No 91
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.86 E-value=3.2e-05 Score=87.70 Aligned_cols=95 Identities=27% Similarity=0.309 Sum_probs=73.2
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc----------------cCcHHHHHHHHHHHHH
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE----------------RSTKESEEAVLQDLSW 116 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~----------------R~~~~~~~~I~~dL~w 116 (443)
-+.+==.|.|||.|||||+++.+...++||. ..|.-++.+-.+|.- ..+.++.+.|.+.|+.
T Consensus 34 ~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~ 113 (805)
T PRK00390 34 YYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKS 113 (805)
T ss_pred EEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3455445899999999999999999999985 578888888777741 1246788899999999
Q ss_pred cCCC--CCCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeee
Q 013441 117 LGLD--WDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 117 LGl~--wDegp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (443)
||+. ||. +|.-+ ++...-+....+|.++|++|.
T Consensus 114 lGi~~Dw~~---------~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 150 (805)
T PRK00390 114 LGFSYDWSR---------EIATCDPEYYKWTQWIFLKLYEKGLAYR 150 (805)
T ss_pred hCCcccCCC---------CeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9995 543 23322 355666778889999999998
No 92
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.82 E-value=0.00018 Score=83.32 Aligned_cols=164 Identities=18% Similarity=0.222 Sum_probs=104.8
Q ss_pred EEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------------------------------c
Q 013441 57 RVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------------------------------R 101 (443)
Q Consensus 57 r~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~---------------------------------R 101 (443)
.+==+|.|||.||+||+++..+...++|. ..|.-+++.-..|.. .
T Consensus 45 i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~ 124 (975)
T PRK06039 45 FYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRE 124 (975)
T ss_pred EeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHH
Confidence 34445799999999999999999999985 588888887776620 1
Q ss_pred CcHHHHHHHHHHHHHcC--CCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCC
Q 013441 102 STKESEEAVLQDLSWLG--LDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQ 177 (443)
Q Consensus 102 ~~~~~~~~I~~dL~wLG--l~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~ 177 (443)
.+.++.+.+.+.++.|| ++||. +|.-.+ ....-+....+|.++|.+|+..
T Consensus 125 ~~~~~~~~~~~~~~rlG~~~Dw~~---------~y~T~d~~y~~~v~~~F~~l~~kGliyr~~----------------- 178 (975)
T PRK06039 125 SVLRYTDEWEEYTERLGRWVDFDN---------PYKTLDNEYMESVWWALKQLYDKGLLYKGY----------------- 178 (975)
T ss_pred HHHHHHHHHHHHHHHhCceeecCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEecc-----------------
Confidence 23467788999999999 67876 344433 2333445566999999999742
Q ss_pred CCCCCCCcCC-CCCHHHHHH--HHhcCCCceEEEecCC-CCc--eeee---ecccceeeecCCCCCCeEEEecCCcccc
Q 013441 178 LPPVYTGKWA-TATDAEVQK--ELERGTPYTYRFRVPK-GGS--LKIS---DLIRGEVSWNLDTLGDFVIMRSNGQPVY 247 (443)
Q Consensus 178 ~~~~Y~g~cr-~ls~~e~~~--~~~~g~~~~iR~k~~~-~~~--~~~~---D~v~G~i~~~~~~~~D~VL~RsDG~PtY 247 (443)
.+-.|+-.|. .|+..|+++ ....+....++|++.. ++. +.|. ..+.|.+..-...-.|.++.+.+| ..|
T Consensus 179 ~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~-~~y 256 (975)
T PRK06039 179 RVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGG-EVY 256 (975)
T ss_pred eeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCC-eEE
Confidence 1234666774 578888862 2234566778888742 111 1121 133344332222235677777665 344
No 93
>PLN02943 aminoacyl-tRNA ligase
Probab=97.79 E-value=0.0001 Score=85.06 Aligned_cols=127 Identities=24% Similarity=0.328 Sum_probs=89.7
Q ss_pred EEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c-----C------------------c
Q 013441 58 VRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R-----S------------------T 103 (443)
Q Consensus 58 ~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~---------R-----~------------------~ 103 (443)
+=-+|.+||.||+||+++..+..+++|. ..|.-++.+-.+|.. + . +
T Consensus 93 ~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~ 172 (958)
T PLN02943 93 PMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWK 172 (958)
T ss_pred ecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHH
Confidence 3346999999999999999999999985 689999988888842 0 0 1
Q ss_pred HHHHHHHHHHHHHcCC--CCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCC
Q 013441 104 KESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLP 179 (443)
Q Consensus 104 ~~~~~~I~~dL~wLGl--~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~ 179 (443)
.++.+.|.+.++.||+ +|+. +|.-.+ +...-+....+|.++|.+|+.. .+
T Consensus 173 ~~~~~~~~~~~~~lG~s~Dw~~---------~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~-----------------~~ 226 (958)
T PLN02943 173 EKYGGTITNQIKRLGASCDWSR---------ERFTLDEQLSRAVVEAFVRLHEKGLIYQGS-----------------YM 226 (958)
T ss_pred HHHHHHHHHHHHHhCcceecCC---------CcccCCHHHHHHHHHHHHHHHHCCCEEecC-----------------ce
Confidence 3567899999999998 5764 333332 3444556777899999999731 12
Q ss_pred CCCCCcCC-CCCHHHHHHHHhcCCCceEEEec
Q 013441 180 PVYTGKWA-TATDAEVQKELERGTPYTYRFRV 210 (443)
Q Consensus 180 ~~Y~g~cr-~ls~~e~~~~~~~g~~~~iR~k~ 210 (443)
--|+-.|. .|+..|++-....|.-+.++|++
T Consensus 227 V~wcp~~~Tals~~Evey~e~~~~~~~i~f~l 258 (958)
T PLN02943 227 VNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRV 258 (958)
T ss_pred eccCCCCCCCcCHHHhhcccccccEEEEEEEE
Confidence 23566664 46777776444456556677776
No 94
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.79 E-value=7.7e-05 Score=85.76 Aligned_cols=93 Identities=22% Similarity=0.371 Sum_probs=69.9
Q ss_pred EEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c--------------------CcHH
Q 013441 57 RVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R--------------------STKE 105 (443)
Q Consensus 57 r~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~---------R--------------------~~~~ 105 (443)
.+==+|.+||.|||||+++.+....++|. ..|..++.+-.+|.. + ...+
T Consensus 53 i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~ 132 (912)
T PRK05743 53 LHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALE 132 (912)
T ss_pred EeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHH
Confidence 34445799999999999999999999985 578888877776630 1 1245
Q ss_pred HHHHHHHHHHHcCC--CCCCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeee
Q 013441 106 SEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 106 ~~~~I~~dL~wLGl--~wDegp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (443)
+.+.+.++++.||+ +||. +|.-. ++...-+....+|.++|.+|+
T Consensus 133 ~~~~~~~~~~~lG~~~dw~~---------~~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 133 QVDIQREDFKRLGVLGDWDN---------PYLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHHHhCCcccCCC---------CcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 57889999999999 8986 33332 244455667778999999997
No 95
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=97.78 E-value=7.9e-05 Score=85.31 Aligned_cols=129 Identities=23% Similarity=0.334 Sum_probs=91.4
Q ss_pred eEEEe-CCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c---------C------------
Q 013441 56 VRVRF-APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R---------S------------ 102 (443)
Q Consensus 56 vr~RF-APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~---------R---------~------------ 102 (443)
+.+=. +|.+||.|||||+++.++...++|. ..|.-+|.+-.||.. + .
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~ 117 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVW 117 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHH
Confidence 44444 5799999999999999999999985 588989988888842 1 0
Q ss_pred --cHHHHHHHHHHHHHcCCC--CCCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhC
Q 013441 103 --TKESEEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLK 176 (443)
Q Consensus 103 --~~~~~~~I~~dL~wLGl~--wDegp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~ 176 (443)
+.++.+.|.+.++.||+. |+. +|+-. ++...-+....+|.++|.+|+-.
T Consensus 118 ~w~~~~~~~~~~~~~~lG~s~Dw~r---------~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~---------------- 172 (874)
T PRK05729 118 EWKEESGGTITNQLRRLGASCDWSR---------ERFTMDEGLSKAVREVFVRLYEKGLIYRGK---------------- 172 (874)
T ss_pred HHHHHHHHHHHHHHHHhCcceecCC---------CcccCCHHHHHHHHHHHHHHHHCCCEeecC----------------
Confidence 356778999999999965 654 23332 24455566777899999999621
Q ss_pred CCCCCCCCcCC-CCCHHHHHHHHhcCCCceEEEec
Q 013441 177 QLPPVYTGKWA-TATDAEVQKELERGTPYTYRFRV 210 (443)
Q Consensus 177 ~~~~~Y~g~cr-~ls~~e~~~~~~~g~~~~iR~k~ 210 (443)
.+--|+-.|. -++..|++.....|.-+.++|.+
T Consensus 173 -~~v~wcp~~~talsd~EV~~~~~~~~~~~i~f~~ 206 (874)
T PRK05729 173 -RLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPL 206 (874)
T ss_pred -cccccCCCCCCcchhhhcccccccceEEEEEEEe
Confidence 1224666664 46777776544456666777765
No 96
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.78 E-value=7.7e-05 Score=86.86 Aligned_cols=129 Identities=22% Similarity=0.287 Sum_probs=88.3
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c-----------------------
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R----------------------- 101 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~---------R----------------------- 101 (443)
+.+==+|.|||.|||||+++.++..+++|. ..|.-++.+-.+|.- +
T Consensus 51 ~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~ 130 (1052)
T PRK14900 51 SIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW 130 (1052)
T ss_pred EEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHH
Confidence 344446899999999999999999999985 588888888888841 1
Q ss_pred -CcHHHHHHHHHHHHHcCC--CCCCCCCCCCCCCcee--ccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhC
Q 013441 102 -STKESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYR--QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLK 176 (443)
Q Consensus 102 -~~~~~~~~I~~dL~wLGl--~wDegp~~gg~~gpy~--QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~ 176 (443)
-+.++.+.|.+.++.||+ +|+. +|+ ..++...-+....+|.++|.+|+-.
T Consensus 131 ~~~~~~~~~~~~~~~~lG~s~Dw~~---------~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~---------------- 185 (1052)
T PRK14900 131 AWKEQYGSRIGEQHKALGASLDWQR---------ERFTMDEGLSRAVREVFVRLHEEGLIYREK---------------- 185 (1052)
T ss_pred HHHHHHHHHHHHHHHHhchheecCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEecc----------------
Confidence 024566889999999995 5654 343 2335566677788999999999732
Q ss_pred CCCCCCCCcCC-CCCHHHHHHHH-hcCCCceEEEec
Q 013441 177 QLPPVYTGKWA-TATDAEVQKEL-ERGTPYTYRFRV 210 (443)
Q Consensus 177 ~~~~~Y~g~cr-~ls~~e~~~~~-~~g~~~~iR~k~ 210 (443)
.+-.|+-.|. .|+..|++... ..|.-+.++|.+
T Consensus 186 -~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l 220 (1052)
T PRK14900 186 -KLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPL 220 (1052)
T ss_pred -ceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEe
Confidence 1223566663 46777764321 224434566665
No 97
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=97.77 E-value=6.3e-05 Score=85.76 Aligned_cols=94 Identities=24% Similarity=0.309 Sum_probs=70.5
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc----------------cCcHHHHHHHHHHHHHc
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE----------------RSTKESEEAVLQDLSWL 117 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~----------------R~~~~~~~~I~~dL~wL 117 (443)
+.+=-.|.|||.|||||+++.++...+||. ..|.-++.+-.+|.- ..+.++.+.+.+.|+.|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 555568999999999999999999999985 578888888887741 12467888999999999
Q ss_pred CCC--CCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeee
Q 013441 118 GLD--WDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 118 Gl~--wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (443)
|+. ||. +|.-++ +...-+....+|.++|++|+
T Consensus 112 G~~~Dw~~---------~~~T~d~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 112 GFSYDWDR---------EIATCDPEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred CCcccCCC---------CcccCCHHHHHHHHHHHHHHHHCCCeEe
Confidence 975 553 233322 23333444569999999997
No 98
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.68 E-value=0.00014 Score=84.49 Aligned_cols=93 Identities=28% Similarity=0.395 Sum_probs=72.2
Q ss_pred EEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c----C-------------------
Q 013441 57 RVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R----S------------------- 102 (443)
Q Consensus 57 r~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~---------R----~------------------- 102 (443)
.+==+|.|||.|||||+++.+....++|. ..|.-++.+-.+|.. + .
T Consensus 64 i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~ 143 (995)
T PTZ00419 64 IVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWE 143 (995)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHH
Confidence 34445799999999999999999999985 589989988888842 1 0
Q ss_pred -cHHHHHHHHHHHHHcCC--CCCCCCCCCCCCCcee--ccccHHHHHHHHHHHHHcCCeee
Q 013441 103 -TKESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYR--QSERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 103 -~~~~~~~I~~dL~wLGl--~wDegp~~gg~~gpy~--QSer~~~Y~~~a~~Li~~G~AY~ 158 (443)
+.++.+.|.+.++.||+ +|+. +|+ .-++....+....+|.++|.+|+
T Consensus 144 w~~~~~~~~~~~~~~lG~~~DW~~---------~~~T~d~~~~~~v~~~F~~l~~~Gliyr 195 (995)
T PTZ00419 144 WKDKHGNNICNQLRRLGSSLDWSR---------EVFTMDEQRSKAVKEAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHHHHHHHHhCceeeCCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 25677889999999995 5665 233 23455677888889999999997
No 99
>PLN02563 aminoacyl-tRNA ligase
Probab=97.58 E-value=0.00019 Score=82.79 Aligned_cols=94 Identities=27% Similarity=0.327 Sum_probs=72.7
Q ss_pred eEEEeCCCCCCc-CChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHH
Q 013441 56 VRVRFAPSPTGN-LHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSW 116 (443)
Q Consensus 56 vr~RFAPSPTG~-LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~----------------~R~~~~~~~~I~~dL~w 116 (443)
+.+=-.|.|||. |||||+++.+....+||. ..|.-++.+-.+|. .-.+.++++.+.+.|+.
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 445456999997 999999999999999985 58888888888873 12356788999999999
Q ss_pred cCC--CCCCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeee
Q 013441 117 LGL--DWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 117 LGl--~wDegp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (443)
||+ +||. +|+-+ ++...-+....+|.++|.+|.
T Consensus 193 lG~s~DW~r---------~~~T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 193 LGFSYDWDR---------EISTTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred hCcEeeCCC---------CeecCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 995 5665 23332 344455677789999999998
No 100
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.57 E-value=0.00021 Score=82.71 Aligned_cols=91 Identities=24% Similarity=0.423 Sum_probs=68.2
Q ss_pred EeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc----------------c--------------CcHHH
Q 013441 59 RFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE----------------R--------------STKES 106 (443)
Q Consensus 59 RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~----------------R--------------~~~~~ 106 (443)
==+|.+||.|||||+++.++...++|. ..|.-++.+-.+|.. | ...++
T Consensus 38 ~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~ 117 (974)
T PLN02843 38 DGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKT 117 (974)
T ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHH
Confidence 345799999999999999999999985 578888877776631 0 02345
Q ss_pred HHHHHHHHHHcCC--CCCCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeee
Q 013441 107 EEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 107 ~~~I~~dL~wLGl--~wDegp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (443)
++.+.++++.||+ +||. +|+-. ++...-.....+|.++|.+|+
T Consensus 118 ~~~~~~~~~~lG~~~Dw~~---------~y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 118 VDTQRESFKRYGVWGDWEN---------PYLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHHHhCCceecCC---------CCccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 6678999999999 8986 34333 234455567778999999997
No 101
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=97.55 E-value=0.00025 Score=83.39 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=71.6
Q ss_pred EEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c------------------------C
Q 013441 58 VRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R------------------------S 102 (443)
Q Consensus 58 ~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~---------R------------------------~ 102 (443)
+==+|.+||.||+||+++..+...++|. ..|.-++++-.+|.- + .
T Consensus 107 ~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~ 186 (1205)
T PTZ00427 107 YDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGI 186 (1205)
T ss_pred ecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHH
Confidence 4446899999999999999999999985 589999999888830 1 0
Q ss_pred cHHHHHHHHHHHHHcC--CCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeee
Q 013441 103 TKESEEAVLQDLSWLG--LDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 103 ~~~~~~~I~~dL~wLG--l~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (443)
+.++.+.+.+.++.|| ++||. +|+-.+ +...-+....+|.++|.+|+
T Consensus 187 ~~~~~~~~~~~~~rlG~~iDw~~---------~y~T~d~~~~~~v~~~f~~L~ekGlIYr 237 (1205)
T PTZ00427 187 VLKYSNEWVKTVERIGRWIDFKN---------DYKTMDKTFMESVWWVFSELYKNNYVYK 237 (1205)
T ss_pred HHHHHHHHHHHHHHhCcEEecCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 2456678899999999 88986 344433 45555667778999999996
No 102
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00015 Score=71.88 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=69.1
Q ss_pred EEEeCCCCCCcCChhhHHHHHHHHHHHHHc---CCeEEEEecCCC------cccCcHHHHHHHHHHHHHcCCCCCCCCCC
Q 013441 57 RVRFAPSPTGNLHVGGARTALFNYLFARSK---GGKFVLRIEDTD------LERSTKESEEAVLQDLSWLGLDWDEGPGV 127 (443)
Q Consensus 57 r~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~---gG~fiLRIEDTD------~~R~~~~~~~~I~~dL~wLGl~wDegp~~ 127 (443)
||=-.--|||.+||||...|+-+|..-... |-..++-|-|.- ..+...++.-.+...|-.+||++....
T Consensus 15 rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~-- 92 (347)
T KOG2713|consen 15 RVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS-- 92 (347)
T ss_pred eeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce--
Confidence 344456899999999999999999887753 334777777832 123556777777788889999998875
Q ss_pred CCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHH
Q 013441 128 GGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKM 169 (443)
Q Consensus 128 gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~ 169 (443)
.|+||+-.+. .+-.+...|-.|-..|.++
T Consensus 93 -----lF~QS~Vpqh--------~el~WlLsslt~mg~L~rm 121 (347)
T KOG2713|consen 93 -----LFVQSDVPQH--------AELSWLLSSLTTMGRLARM 121 (347)
T ss_pred -----eeeeccchHH--------HHHHHHHHhccchHHHHhh
Confidence 6899986522 1122334566677777665
No 103
>PLN02882 aminoacyl-tRNA ligase
Probab=97.42 E-value=0.00058 Score=80.28 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=70.5
Q ss_pred EeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc----------------c-----------------Cc
Q 013441 59 RFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE----------------R-----------------ST 103 (443)
Q Consensus 59 RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~----------------R-----------------~~ 103 (443)
==+|.+||.+|+||+++.++..+++|. ..|.-++++-.+|.- + .+
T Consensus 44 dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~ 123 (1159)
T PLN02882 44 DGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIV 123 (1159)
T ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHH
Confidence 335899999999999999999999986 578999988887730 1 12
Q ss_pred HHHHHHHHHHHHHcC--CCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeee
Q 013441 104 KESEEAVLQDLSWLG--LDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 104 ~~~~~~I~~dL~wLG--l~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (443)
..+.+.+.+.++.|| ++||. +|+-.+ +...-+....+|.++|..|+
T Consensus 124 ~~~~~~~~~~~~rlG~~~D~~~---------~y~T~d~~~~~~v~~~f~~l~~kGliyr 173 (1159)
T PLN02882 124 TRYSKEWEKTVTRTGRWIDFEN---------DYKTMDPKFMESVWWVFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHHHHHHHcCcEEECCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 457778889999999 88986 344443 44455567778999999997
No 104
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=97.37 E-value=0.00071 Score=78.33 Aligned_cols=94 Identities=23% Similarity=0.350 Sum_probs=67.7
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------cc----------------------
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------ER---------------------- 101 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~----------~R---------------------- 101 (443)
+..==+|.|||.||+||+++.++..+++|. ..|.-++.+=..|. ++
T Consensus 57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~ 136 (961)
T PRK13804 57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE 136 (961)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence 344456799999999999999999999985 57877776666552 00
Q ss_pred CcHHHHHHHHHHHHHcCCC--CCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeee
Q 013441 102 STKESEEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 102 ~~~~~~~~I~~dL~wLGl~--wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (443)
...++++.+.++++.||+. ||. +|.-.+ ....-+....+|.++|.+|+
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~---------~y~T~d~~y~~~~~~~F~~l~~kGliyr 188 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDN---------PYTTMDFHAEARIAREFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 1234567888999999985 775 344332 33444556778999999997
No 105
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0015 Score=74.01 Aligned_cols=127 Identities=25% Similarity=0.354 Sum_probs=92.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc-----------------------cC---------cHHH
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE-----------------------RS---------TKES 106 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~-----------------------R~---------~~~~ 106 (443)
+|.+||.||+|||.+..+-...+|. ..|.=+|=+-.||.. |. ++++
T Consensus 41 PPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~ 120 (877)
T COG0525 41 PPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEES 120 (877)
T ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Confidence 4799999999999988888888875 578888888888842 11 3567
Q ss_pred HHHHHHHHHHcCCC--CCCCCCCCCCCCceecc-ccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCC
Q 013441 107 EEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQS-ERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYT 183 (443)
Q Consensus 107 ~~~I~~dL~wLGl~--wDegp~~gg~~gpy~QS-er~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~ 183 (443)
...|.+-++.||+. |+.. -+.=+ +....-++..-+|-++|..|+-. .+--.+
T Consensus 121 ~~~I~~Q~~rLG~S~DWsrE--------~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~-----------------~lVNWc 175 (877)
T COG0525 121 GGTIREQLRRLGVSVDWSRE--------RFTMDPGLSRAVQEAFVRLYEKGLIYRGE-----------------RLVNWC 175 (877)
T ss_pred HHHHHHHHHHhCCCcccccc--------cccCCHHHHHHHHHHHHHHHHCCceeecC-----------------CcccCC
Confidence 78999999999976 5432 11112 24567788899999999999731 112246
Q ss_pred CcCC-CCCHHHHHHHHhcCCCceEEEecCC
Q 013441 184 GKWA-TATDAEVQKELERGTPYTYRFRVPK 212 (443)
Q Consensus 184 g~cr-~ls~~e~~~~~~~g~~~~iR~k~~~ 212 (443)
-.|+ .+|..|++.+..+|.-+.+|+.+-.
T Consensus 176 P~~~TAiSd~EVe~~e~~g~L~~i~y~l~~ 205 (877)
T COG0525 176 PKCRTAISDIEVEYKEVEGKLYYIKYPLAD 205 (877)
T ss_pred CccccchhhhhhccceeeeeEEEEEEecCC
Confidence 6676 5788888877777888888887743
No 106
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.00037 Score=78.58 Aligned_cols=95 Identities=28% Similarity=0.329 Sum_probs=68.3
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEe----------------cCCCcccCcHHHHHHHHHHHHH
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRI----------------EDTDLERSTKESEEAVLQDLSW 116 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRI----------------EDTD~~R~~~~~~~~I~~dL~w 116 (443)
-+.+=-=|.|+|.||+||+|++.....+||. ..|.=+|-- -.+||.--+..+++.+.+.|+.
T Consensus 36 fyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~ 115 (814)
T COG0495 36 FYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKS 115 (814)
T ss_pred eEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 3556666999999999999999999999985 467766631 1246666788999999999999
Q ss_pred cCCC--CCCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeee
Q 013441 117 LGLD--WDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 117 LGl~--wDegp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (443)
||+. |+.. +.-+ ++..--|-...+|.++|++|.
T Consensus 116 lG~siDW~Re---------f~T~Dp~Yyk~~QW~F~kL~ekGL~y~ 152 (814)
T COG0495 116 LGFSIDWRRE---------FATCDPEYYKWIQWQFLKLYEKGLAYR 152 (814)
T ss_pred hCCccccccc---------eecCCccHHHHHHHHHHHHHHCCCEEe
Confidence 9864 6654 1111 111122234558999999998
No 107
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=97.15 E-value=0.00099 Score=73.40 Aligned_cols=89 Identities=29% Similarity=0.393 Sum_probs=62.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------------------------------cCcHH
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------------------------------RSTKE 105 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~---------------------------------R~~~~ 105 (443)
+|.+||.||+||+++..+...++|. ..|.-++.+=..|.. .-+.+
T Consensus 31 PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (601)
T PF00133_consen 31 PPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREWAEE 110 (601)
T ss_dssp --BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHHH
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcchhhh
Confidence 4799999999999999999999985 578877766554420 01346
Q ss_pred HHHHHHHHHHHcCC--CCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeee
Q 013441 106 SEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 106 ~~~~I~~dL~wLGl--~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (443)
+.+.+.++++.||+ +|+. +|.-.+ ....-.....+|.++|.+|+
T Consensus 111 ~~~~~~~~~~~lG~~~Dw~~---------~y~T~d~~y~~~v~~~F~~l~~kglIyr 158 (601)
T PF00133_consen 111 FIEEQKEQFKRLGVSIDWDR---------EYFTMDPEYEKFVWWQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHHHHTT--SECTC---------EEETTSHHHHHHHHHHHHHHHHTTSEEE
T ss_pred hhhhhhhhhhheeeecccCC---------ceEECCccHhHHHHHHHHHHHhcCcEEe
Confidence 67789999999996 6775 455433 33444556678999999998
No 108
>PLN02381 valyl-tRNA synthetase
Probab=97.15 E-value=0.0013 Score=76.87 Aligned_cols=95 Identities=28% Similarity=0.381 Sum_probs=70.8
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c------C----------------
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R------S---------------- 102 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~---------R------~---------------- 102 (443)
+.+==+|.+||.|||||+++..+...++|. ..|.-++.+-.+|.. + .
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~ 210 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence 334445799999999999999999999985 578888888888741 0 0
Q ss_pred --cHHHHHHHHHHHHHcCC--CCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeee
Q 013441 103 --TKESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRC 159 (443)
Q Consensus 103 --~~~~~~~I~~dL~wLGl--~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C 159 (443)
+.++.+.|.+.++.||+ +|+. +|+-.+ +...-+....+|.++|.+|+-
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~---------~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSR---------ECFTMDEQRSKAVTEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCC---------ccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 24567788899999995 5654 344332 445556677899999999984
No 109
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.87 E-value=0.0047 Score=64.43 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=37.5
Q ss_pred CCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCC
Q 013441 258 MAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA 310 (443)
Q Consensus 258 m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~ 310 (443)
...+.++-|.|...|--.=..|.+-++-..+.-...|++.+.+|.||||+.|+
T Consensus 176 l~~di~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~~~ 228 (377)
T TIGR00234 176 LNVDLQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADGEKMGKSGGG 228 (377)
T ss_pred HcCCeeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCCCCccCCCCC
Confidence 34447788999876655445555666644455567789899999999999753
No 110
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=96.71 E-value=0.0028 Score=73.33 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=38.5
Q ss_pred CC-cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhC
Q 013441 287 MP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (443)
Q Consensus 287 ~P-~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG 334 (443)
.| .+.|+++++. +|+||||+.|+ +++.++.+. |.++++|.||+..|
T Consensus 604 ~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~~-yGaDalRl~Ll~~~ 651 (938)
T TIGR00395 604 WPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVEK-FGADVARLYIADAA 651 (938)
T ss_pred cCcEEEEeceEEe-CCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhcC
Confidence 46 5678888776 89999999999 588888776 89999999998765
No 111
>PLN02959 aminoacyl-tRNA ligase
Probab=96.30 E-value=0.016 Score=68.10 Aligned_cols=42 Identities=24% Similarity=0.197 Sum_probs=34.2
Q ss_pred EEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHh
Q 013441 290 FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 290 f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~L 333 (443)
+...++|+ .+|+||||+.|+ +++.++.+. |-++++|.||+..
T Consensus 706 v~v~G~V~-~~G~KMSKSkGNvI~p~diI~k-yGADalRl~la~~ 748 (1084)
T PLN02959 706 FRCNGHLM-LNSEKMSKSTGNFLTLRQAIEE-FSADATRFALADA 748 (1084)
T ss_pred EEEccEEe-cCCcCccccCCCcCCHHHHHHH-hCchHHHHHHhhc
Confidence 55566665 699999999998 577787776 8999999999765
No 112
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.0078 Score=66.00 Aligned_cols=94 Identities=27% Similarity=0.355 Sum_probs=68.6
Q ss_pred CceEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecC----------------CCcccCcHHHHHHHHHHHH
Q 013441 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIED----------------TDLERSTKESEEAVLQDLS 115 (443)
Q Consensus 54 ~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIED----------------TD~~R~~~~~~~~I~~dL~ 115 (443)
.+++.--=|.|+|.|||||+|.+.++...||. .+|.=++.-=. ++++--+...++.+.+-|.
T Consensus 58 ~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~ 137 (876)
T KOG0435|consen 58 KKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLK 137 (876)
T ss_pred CceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHH
Confidence 35888888999999999999999999999985 45665553222 3333346788889999999
Q ss_pred HcCCC--CCCCCCCCCCCCceeccccHHHHHH----HHHHHHHcCCeee
Q 013441 116 WLGLD--WDEGPGVGGDYGPYRQSERNSLYKQ----YADKLLESGHVYR 158 (443)
Q Consensus 116 wLGl~--wDegp~~gg~~gpy~QSer~~~Y~~----~a~~Li~~G~AY~ 158 (443)
.||+. ||..- |-..+.|.+ ..-+|.++|.||.
T Consensus 138 ~lg~~FDWdrEi-----------STC~PdYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 138 SLGISFDWDREI-----------STCEPDYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred HcCccccccccc-----------ccCCcchhHHHHHHHHHHHHhhhhhc
Confidence 99974 77642 333333433 3458899999997
No 113
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=95.57 E-value=0.05 Score=63.17 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=60.2
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCC-------------------------------c--------
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTD-------------------------------L-------- 99 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD-------------------------------~-------- 99 (443)
.|.|||.||+||++|.+....+||. ..|.-+|..=..| +
T Consensus 33 pPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~ 112 (938)
T TIGR00395 33 YPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTD 112 (938)
T ss_pred CCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHHHhhcC
Confidence 4799999999999999999998885 4566665522211 0
Q ss_pred -ccCcHHHHHHHHHHHHHcCCC--CCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeee
Q 013441 100 -ERSTKESEEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 100 -~R~~~~~~~~I~~dL~wLGl~--wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (443)
..-+..+.+.+.++++.||+. |+. +|.-.+ +...-+....+|.++|++|.
T Consensus 113 ~~~~~~~~~~~~~~~~~~lG~s~DW~r---------~~~T~dp~y~~~v~~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 113 PEYIVEYFSREAESACKSMGYSIDWRR---------SFKTTDPYYDRFIEWQMNKLKELGLIVK 167 (938)
T ss_pred HHHHHHHHHHHHHHHHHHhCceEECCC---------CccCCChhHHHHHHHHHHHHHHCCCEec
Confidence 011245566899999999975 655 233332 23334456678999999987
No 114
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.043 Score=57.74 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=38.2
Q ss_pred EecCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCC
Q 013441 264 IRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA 310 (443)
Q Consensus 264 IRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~ 310 (443)
+-|.|..-|--.=+.+.+.+|...|.-.|+|||.+.+|+||||+.|.
T Consensus 185 ~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG~KmgKs~~~ 231 (401)
T COG0162 185 LGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGG 231 (401)
T ss_pred cCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCcccccCCC
Confidence 66888766655555666888997777789999999999999999885
No 115
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=95.39 E-value=0.053 Score=62.34 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=51.5
Q ss_pred CcceEEecCCCCCCHHHHHHHHHH---cCCCCCc-EEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHh
Q 013441 259 AISHVIRAEEHLPNTLRQALIYKA---LGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 259 ~ITHVIRG~D~l~ntp~q~~ly~a---Lg~~~P~-f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~L 333 (443)
.+...+-|.|++.+ -.|..++.+ +|..+|. ..-++++++.+|+|||||.|+ ++..++.++ |.++++|.|++..
T Consensus 564 P~d~~i~G~Di~r~-Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~-yGaDalR~~ll~~ 641 (861)
T TIGR00392 564 PADFILEGSDQTRG-WFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINK-YGADILRLYVASS 641 (861)
T ss_pred CceEEEEecchhcc-HHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHH-cCHHHHHHHHHhC
Confidence 35556668888753 244444443 3655553 333467778899999999998 578888776 8899999999876
No 116
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=95.25 E-value=0.069 Score=62.30 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=56.9
Q ss_pred CCcceEEecCCCCCCHHHHHHHH---HHcCCCCC-cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHH
Q 013441 258 MAISHVIRAEEHLPNTLRQALIY---KALGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 258 m~ITHVIRG~D~l~ntp~q~~ly---~aLg~~~P-~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~ 332 (443)
...+..+-|.|++..- .+.++. ..+|-+++ ...-++++++.+|+|||||.|+ ++..++.++ |.++|+|.||+.
T Consensus 544 ~Pad~~~~G~Di~r~W-f~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~lls 621 (975)
T PRK06039 544 FPADFIVEGIDQTRGW-FYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDK-YGADALRWYLLS 621 (975)
T ss_pred CCceEEEechhhHhhH-HHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHH-hChHHHHHHHHh
Confidence 3455555688886542 233222 12344443 3455678889999999999998 578888776 789999999988
Q ss_pred hCCCCCCCCcccCHHH
Q 013441 333 LGWGDGTENEFFTLKQ 348 (443)
Q Consensus 333 LG~~~~~~~e~~s~~e 348 (443)
.+.. .++-.|+.+.
T Consensus 622 ~~~~--~~D~~fs~~~ 635 (975)
T PRK06039 622 SSAP--WEDLRFSEDG 635 (975)
T ss_pred CCCC--CCCceechhH
Confidence 7631 2223455555
No 117
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=95.04 E-value=0.082 Score=61.12 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=50.1
Q ss_pred CcceEEecCCCCCCHHHHHHHHHHcCC---CCC-cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHh
Q 013441 259 AISHVIRAEEHLPNTLRQALIYKALGF---SMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 259 ~ITHVIRG~D~l~ntp~q~~ly~aLg~---~~P-~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~L 333 (443)
-+...+-|.|++.+=--...+..+..+ +.| ...++++++. +|+||||+.|+ ++..++.++ |.++++|.||+..
T Consensus 530 P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~-yGaDalRl~L~~~ 607 (897)
T PRK12300 530 PVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEE-YGADVVRLYLTSS 607 (897)
T ss_pred CceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhC
Confidence 345556689987651111112222233 345 5667788887 89999999998 577787776 8899999999875
Q ss_pred C
Q 013441 334 G 334 (443)
Q Consensus 334 G 334 (443)
+
T Consensus 608 ~ 608 (897)
T PRK12300 608 A 608 (897)
T ss_pred C
Confidence 4
No 118
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.04 E-value=0.021 Score=59.65 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=64.4
Q ss_pred eEEEeCCCCCCcCChhhHHHH-HHHHHHHHHc--CCeEEEEecCCCccc----------------CcHHHHHHHHHHHHH
Q 013441 56 VRVRFAPSPTGNLHVGGARTA-LFNYLFARSK--GGKFVLRIEDTDLER----------------STKESEEAVLQDLSW 116 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtA-L~n~l~Ar~~--gG~fiLRIEDTD~~R----------------~~~~~~~~I~~dL~w 116 (443)
+.|-=-|..+.-.|+||.-.. |-+-.|||.. .|.--++|..||.== --+.+...-....+|
T Consensus 17 litsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ihk~vy~W 96 (567)
T KOG1247|consen 17 LITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIHKVVYDW 96 (567)
T ss_pred eeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcchhHHHHHHh
Confidence 334444888899999998744 4567888864 566778999998511 113344455667899
Q ss_pred cCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCe
Q 013441 117 LGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHV 156 (443)
Q Consensus 117 LGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~A 156 (443)
++|+.|+. |-..--...++-|....+|.++|+.
T Consensus 97 f~IdfD~f-------grtTT~~qT~i~Q~iF~kl~~ng~~ 129 (567)
T KOG1247|consen 97 FKIDFDEF-------GRTTTKTQTEICQDIFSKLYDNGYL 129 (567)
T ss_pred hccccccc-------CcccCcchhHHHHHHhhchhhcCCc
Confidence 99999984 3333334567788888899888753
No 119
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.073 Score=60.17 Aligned_cols=90 Identities=32% Similarity=0.484 Sum_probs=67.6
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc-------------------cC--------------cHH
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE-------------------RS--------------TKE 105 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~-------------------R~--------------~~~ 105 (443)
+|..||.||||||-|.-+-...+|. ..|.-++-+-.||.. |- .++
T Consensus 83 PPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e 162 (995)
T KOG0432|consen 83 PPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEE 162 (995)
T ss_pred CCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHH
Confidence 3578999999999999998888885 578888888888852 10 134
Q ss_pred HHHHHHHHHHHcC--CCCCCCCCCCCCCCceecc-ccHHHHHHHHHHHHHcCCeee
Q 013441 106 SEEAVLQDLSWLG--LDWDEGPGVGGDYGPYRQS-ERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 106 ~~~~I~~dL~wLG--l~wDegp~~gg~~gpy~QS-er~~~Y~~~a~~Li~~G~AY~ 158 (443)
+-..|.+.|+.|| ++||..- |.=. ++-.--.++..+|-++|..|+
T Consensus 163 ~g~~I~~Qlk~lGas~DW~re~--------fTmD~~~s~AV~eAFvrL~eeglIyR 210 (995)
T KOG0432|consen 163 YGGRIYNQLKRLGASLDWDREA--------FTMDPKLSRAVTEAFVRLHEEGLIYR 210 (995)
T ss_pred hCccHHHHHHHhcCcccccHhh--------cccCHHHHHHHHHHHHHHHhcCceEe
Confidence 4458999999999 4687641 2222 234456788889999999998
No 120
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=94.71 E-value=0.072 Score=58.86 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=51.6
Q ss_pred CCcceEEecCCCCCCHHHHHHHH-HHcCCCC--CcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHh
Q 013441 258 MAISHVIRAEEHLPNTLRQALIY-KALGFSM--PYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 258 m~ITHVIRG~D~l~ntp~q~~ly-~aLg~~~--P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~L 333 (443)
..+.-.+-|.|++.+=-...++. -++--+. +....++++++.+|+||||++|+ ++..++.++ |-++++|-+++..
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lRl~~~~~ 591 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEK-YGADALRLWLASS 591 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHH-T-HHHHHHHHHHH
T ss_pred CCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHHHH-hCcHHHHHHHHhc
Confidence 45777788999987643333322 3443333 45677789999999999999998 478888876 8899999998865
Q ss_pred C
Q 013441 334 G 334 (443)
Q Consensus 334 G 334 (443)
+
T Consensus 592 ~ 592 (601)
T PF00133_consen 592 A 592 (601)
T ss_dssp S
T ss_pred C
Confidence 3
No 121
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=94.30 E-value=0.19 Score=58.24 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=50.9
Q ss_pred CcceEEecCCCCCCHHHHHHHHHH---cCCCCCc-EEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHH
Q 013441 259 AISHVIRAEEHLPNTLRQALIYKA---LGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 259 ~ITHVIRG~D~l~ntp~q~~ly~a---Lg~~~P~-f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~ 332 (443)
..+-.+-|.|++.. -.|..++.+ .|.++|. ..-++++++.+|+||||+.|+ ++..++.++ |-++++|.|++.
T Consensus 545 P~Dl~~~G~Di~r~-Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaDalR~~ll~ 621 (912)
T PRK05743 545 PADLYLEGSDQHRG-WFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKK-YGADILRLWVAS 621 (912)
T ss_pred CceEEEecccccch-HHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHh-cChHHHHHHHHh
Confidence 45555668888742 234444433 4555553 445578899999999999999 477777765 889999999985
No 122
>PLN02843 isoleucyl-tRNA synthetase
Probab=94.13 E-value=0.16 Score=59.37 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=47.7
Q ss_pred EEecCCCCCCHHHHHHHHH---HcCCCCC-cEEEeeceecCCCceecccCCC-CChHHHHHC--------CCCHHHHHHH
Q 013441 263 VIRAEEHLPNTLRQALIYK---ALGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREM--------GYLPQAMVNY 329 (443)
Q Consensus 263 VIRG~D~l~ntp~q~~ly~---aLg~~~P-~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~--------G~~peai~n~ 329 (443)
.+-|.|.+.+ =.|..|+. +.|..++ ...-++++++.+|+||||+.|+ ++..++.+. -|-++++|.|
T Consensus 568 ~~eG~Di~rg-Wf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~ 646 (974)
T PLN02843 568 YLEGSDQHRG-WFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLW 646 (974)
T ss_pred eeeeccccch-HHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHH
Confidence 4447777642 23443332 3354343 3334488899999999999999 478888773 3889999999
Q ss_pred HHHh
Q 013441 330 LALL 333 (443)
Q Consensus 330 l~~L 333 (443)
++..
T Consensus 647 l~~~ 650 (974)
T PLN02843 647 VASV 650 (974)
T ss_pred HHhc
Confidence 9754
No 123
>PLN02882 aminoacyl-tRNA ligase
Probab=93.79 E-value=0.13 Score=60.91 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=50.3
Q ss_pred cceEEecCCCCCCHHHHHHHH---HHcCCCCCc-EEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhC
Q 013441 260 ISHVIRAEEHLPNTLRQALIY---KALGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (443)
Q Consensus 260 ITHVIRG~D~l~ntp~q~~ly---~aLg~~~P~-f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG 334 (443)
...++-|.|.+..= .+.++. ..+|.++|. ...++++++.+|+|||||.|+ +...++.++ |-++++|.||+...
T Consensus 568 aD~i~eG~Dq~RgW-f~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~-YGADaLR~~Ll~s~ 645 (1159)
T PLN02882 568 ADFVAEGLDQTRGW-FYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDK-YGADALRLYLINSP 645 (1159)
T ss_pred ceEEEEecchhhhH-HHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHH-hCcHHHHHHHHhCC
Confidence 45555577766532 222221 234666664 567789999999999999999 466666665 78999999998543
No 124
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=93.64 E-value=0.24 Score=57.21 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=53.1
Q ss_pred EEecCCCCCCHHHHHHHHHH--cCCCCC--cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCC
Q 013441 263 VIRAEEHLPNTLRQALIYKA--LGFSMP--YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGD 337 (443)
Q Consensus 263 VIRG~D~l~ntp~q~~ly~a--Lg~~~P--~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~ 337 (443)
.+-|.|.+..=+ +..+... +....| ...-+++|++.+|+|||||.|+ +...++.++ |-++|+|.||+..+-
T Consensus 477 ~~~G~Dii~~W~-a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~-yGaDalR~~ll~~~~-- 552 (874)
T PRK05729 477 LVTGFDIIFFWV-ARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDK-YGADALRFTLAALAS-- 552 (874)
T ss_pred ccccccccchHH-HHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHH-hChHHHHHHHHhCCC--
Confidence 344777654322 2222222 222445 4555678899999999999998 577888776 789999999987642
Q ss_pred CCCCcccCHHHH
Q 013441 338 GTENEFFTLKQL 349 (443)
Q Consensus 338 ~~~~e~~s~~el 349 (443)
...+-.|+.+.+
T Consensus 553 ~~~Di~fs~~~l 564 (874)
T PRK05729 553 PGRDIRFDEERV 564 (874)
T ss_pred CCCCceeCHHHH
Confidence 222334666654
No 125
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=93.08 E-value=0.36 Score=56.35 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=48.4
Q ss_pred cceEEecCCCCCCHHHHHHHHHHc---CCCCC-cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHh
Q 013441 260 ISHVIRAEEHLPNTLRQALIYKAL---GFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 260 ITHVIRG~D~l~ntp~q~~ly~aL---g~~~P-~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~L 333 (443)
.+..+-|.|.+.. =.|..+..++ |..|| ...=++++++.+|+||||+.|+ ++..++.+. |-++++|.|++..
T Consensus 584 aD~~~eG~Di~rg-WF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaD~lRl~lls~ 660 (961)
T PRK13804 584 ADLYLEGSDQHRG-WFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQ-SGADILRLWVASV 660 (961)
T ss_pred ceEEEEEcccccH-HHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHh-cCHHHHHHHHHhC
Confidence 3344557777531 2344444444 33444 3333388899999999999999 477777664 8999999999853
No 126
>PLN02943 aminoacyl-tRNA ligase
Probab=92.86 E-value=0.28 Score=57.25 Aligned_cols=56 Identities=20% Similarity=0.073 Sum_probs=41.7
Q ss_pred EEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHH
Q 013441 290 FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQL 349 (443)
Q Consensus 290 f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~el 349 (443)
+.-++++++.+|+||||+.|+ +++.++.++ |.|++++.||+.... ..+-.|+.+.+
T Consensus 570 v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~-ygaDalR~~l~~~~~---~~d~~fs~~~l 626 (958)
T PLN02943 570 VYLHGLIRDSQGRKMSKTLGNVIDPLDTIKE-FGTDALRFTLALGTA---GQDLNLSTERL 626 (958)
T ss_pred EEEeccEECCCCCcccCcCCCCCCHHHHHHh-cCChHHHHHHHhCCC---CCCccccHHHH
Confidence 455567789999999999998 588888776 899999999886432 23334665544
No 127
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.66 E-value=0.31 Score=56.29 Aligned_cols=126 Identities=24% Similarity=0.374 Sum_probs=80.6
Q ss_pred EeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCC-------------------------c----c---cCcH
Q 013441 59 RFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTD-------------------------L----E---RSTK 104 (443)
Q Consensus 59 RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD-------------------------~----~---R~~~ 104 (443)
==+|..||.+|||||.+=++-.+..|. ..|..+-|+=.=| . + ....
T Consensus 55 DGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~ 134 (933)
T COG0060 55 DGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFAL 134 (933)
T ss_pred CCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHH
Confidence 346999999999999999988888775 3455554433322 0 0 1134
Q ss_pred HHHHHHHHHHHHcCC--CCCCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCC
Q 013441 105 ESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPP 180 (443)
Q Consensus 105 ~~~~~I~~dL~wLGl--~wDegp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~ 180 (443)
++++...++++.||+ +||. ||.-- +..+.--....++.++|+.|+- ..|
T Consensus 135 ~~v~~q~~~f~RLGv~~Dw~n---------pY~Tmd~~ye~~~~~~f~~~~~kGllyrg------------------~Kp 187 (933)
T COG0060 135 EQVDEQKEQFKRLGVWGDWEN---------PYKTMDPSYEESVWWAFKELYEKGLLYRG------------------YKP 187 (933)
T ss_pred HHHHHHHHHHHhheEeeccCC---------CeecCCHHHHHHHHHHHHHHHHCCCeecC------------------Cee
Confidence 677788899999996 5775 56543 3344445577899999999963 234
Q ss_pred C-CCCcCC-CCCHHHHHHHHhcCCCceEEEecC
Q 013441 181 V-YTGKWA-TATDAEVQKELERGTPYTYRFRVP 211 (443)
Q Consensus 181 ~-Y~g~cr-~ls~~e~~~~~~~g~~~~iR~k~~ 211 (443)
. |.-.|+ .|++.|++..........++|++.
T Consensus 188 v~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~ 220 (933)
T COG0060 188 VPWSPRCETALAEAEVEYGDVKDPSIYVKFPVK 220 (933)
T ss_pred eeecCCCCcchhhhhhcccccCCceEEEEEEec
Confidence 3 455675 466666654322222344577764
No 128
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=92.17 E-value=0.23 Score=57.55 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=56.7
Q ss_pred CChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc-----c----c-------------------------------CcHH
Q 013441 68 LHVGGARTALFNYLFARS--KGGKFVLRIEDTDL-----E----R-------------------------------STKE 105 (443)
Q Consensus 68 LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~-----~----R-------------------------------~~~~ 105 (443)
||+||+++.+...++||. ..|.-+++.-..|. + + .+..
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999985 57888887544441 0 0 0123
Q ss_pred HHHHHHHHHHHcCC--CCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeee
Q 013441 106 SEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 106 ~~~~I~~dL~wLGl--~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (443)
+.+.+.++++.||+ +|+. +|.-.+ ...--+....+|.++|++|+
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r---------~y~T~dp~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRR---------EFTTTDPEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCC---------CeECCChhHHHHHHHHHHHHHHCCCEec
Confidence 44778999999996 5775 455444 22233345668999999996
No 129
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=91.57 E-value=0.48 Score=55.85 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=36.5
Q ss_pred EEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhC
Q 013441 290 FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (443)
Q Consensus 290 f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG 334 (443)
..-+++|++.+|+||||+.|+ ++..++.+. |-++++|.||+..+
T Consensus 525 V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~-yGaDalR~~L~~~~ 569 (1052)
T PRK14900 525 VYLHPMVRDEKGQKMSKTKGNVIDPLVITEQ-YGADALRFTLAALT 569 (1052)
T ss_pred eEecccEECCCCCCccCCCCCCCCHHHHHHH-hCcHHHHHHHHhcC
Confidence 455578899999999999998 577777765 78999999998753
No 130
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.46 E-value=0.41 Score=54.84 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=52.4
Q ss_pred CcceEEecCCCCC-CHHHHHHHHHHcCCCCCc--EEEeeceecCCCceecccCCCC-ChHHHHHCCCCHHHHHHHHHHhC
Q 013441 259 AISHVIRAEEHLP-NTLRQALIYKALGFSMPY--FAHVSLILAPDRSKLSKRHGAT-SVGQFREMGYLPQAMVNYLALLG 334 (443)
Q Consensus 259 ~ITHVIRG~D~l~-ntp~q~~ly~aLg~~~P~--f~Hlplil~~dg~KLSKR~g~~-si~~~r~~G~~peai~n~l~~LG 334 (443)
-.+-.+-|-|-+. ...+-+.+--.|.-+.|- ..=++||.+++|+||||+.|++ ...++.++ |-.+|++.+|+.++
T Consensus 478 Pt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~-yGaDAlRf~la~~~ 556 (877)
T COG0525 478 PTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDK-YGADALRFTLASLA 556 (877)
T ss_pred CCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHH-hChHHHHHHHHhcc
Confidence 3444456877653 344445544556666772 2234788999999999999994 66666665 67999999998875
Q ss_pred C
Q 013441 335 W 335 (443)
Q Consensus 335 ~ 335 (443)
.
T Consensus 557 ~ 557 (877)
T COG0525 557 S 557 (877)
T ss_pred C
Confidence 3
No 131
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=90.30 E-value=0.84 Score=38.49 Aligned_cols=60 Identities=32% Similarity=0.519 Sum_probs=38.7
Q ss_pred EEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccC------cHHHHHHHHHHHHHcCCCCC
Q 013441 58 VRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERS------TKESEEAVLQDLSWLGLDWD 122 (443)
Q Consensus 58 ~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~------~~~~~~~I~~dL~wLGl~wD 122 (443)
+.|+.++ |++|+||...+-. |+..+.+.++.|.|...... .++-.+.+....--.|++|-
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~----a~~~~d~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~~~~~~G~~~~ 67 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICR----AKGIADQCVVRIDDNPPVKVWQDPHELEERKESIEEDISVCGEDFQ 67 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHH----HHHhCCcEEEEEcCCCcccccCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 6789999 9999999997433 33444689999998765432 23333344444444576653
No 132
>PLN02959 aminoacyl-tRNA ligase
Probab=90.22 E-value=0.53 Score=55.67 Aligned_cols=45 Identities=24% Similarity=0.083 Sum_probs=35.1
Q ss_pred CceEEEeC-CCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCC
Q 013441 54 GQVRVRFA-PSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTD 98 (443)
Q Consensus 54 ~~vr~RFA-PSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD 98 (443)
.+..+=++ |.+||.|||||++|....-..||. ..|.-+|..=..|
T Consensus 45 ~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d 92 (1084)
T PLN02959 45 EKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFH 92 (1084)
T ss_pred CcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcC
Confidence 45677787 899999999999999999998885 4677666544433
No 133
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=89.87 E-value=0.98 Score=53.95 Aligned_cols=75 Identities=19% Similarity=0.118 Sum_probs=47.3
Q ss_pred CcceEEecCCCCCCHH-HHHHHHHHcCCCCC--cEEEeeceecCCCceecccCCCC-ChHHHHHCCCCHHHHHHHHHHhC
Q 013441 259 AISHVIRAEEHLPNTL-RQALIYKALGFSMP--YFAHVSLILAPDRSKLSKRHGAT-SVGQFREMGYLPQAMVNYLALLG 334 (443)
Q Consensus 259 ~ITHVIRG~D~l~ntp-~q~~ly~aLg~~~P--~f~Hlplil~~dg~KLSKR~g~~-si~~~r~~G~~peai~n~l~~LG 334 (443)
-.+.++-|.|.+..=. ..+.+--++--..| ...=++++++.+|+|||||.|++ ...++.++ |-++|+|.||+..+
T Consensus 673 PaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~k-YGADaLR~~Lls~~ 751 (1205)
T PTZ00427 673 PADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDK-YGADSLRLYLINSV 751 (1205)
T ss_pred CceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHh-cCCcHHHHHHHhcC
Confidence 3455555777664321 11222222322355 33445788999999999999994 55555554 77999999998653
No 134
>PLN02381 valyl-tRNA synthetase
Probab=89.07 E-value=0.99 Score=53.33 Aligned_cols=77 Identities=16% Similarity=0.046 Sum_probs=49.8
Q ss_pred CCcceEEecCCCCCCHHHHHHHH-HHcCCCCC--cEEEeeceecCCCceecccCCCC-ChHHHHHC--------------
Q 013441 258 MAISHVIRAEEHLPNTLRQALIY-KALGFSMP--YFAHVSLILAPDRSKLSKRHGAT-SVGQFREM-------------- 319 (443)
Q Consensus 258 m~ITHVIRG~D~l~ntp~q~~ly-~aLg~~~P--~f~Hlplil~~dg~KLSKR~g~~-si~~~r~~-------------- 319 (443)
+-.+..+-|-|.+.-=.....+. -++.-..| ...-+++|++.+|+||||+.|++ ...++.+.
T Consensus 607 ~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~ 686 (1066)
T PLN02381 607 YPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 686 (1066)
T ss_pred CCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccc
Confidence 34555566777664322222221 22444556 34556899999999999999994 55555552
Q ss_pred ----------------------CCCHHHHHHHHHHhC
Q 013441 320 ----------------------GYLPQAMVNYLALLG 334 (443)
Q Consensus 320 ----------------------G~~peai~n~l~~LG 334 (443)
-|-++|+|.+|+..+
T Consensus 687 ~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~ 723 (1066)
T PLN02381 687 LDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYT 723 (1066)
T ss_pred cchhhhhhHhhhccccCCCCccccChHHHHHHHHcCC
Confidence 367999999998765
No 135
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=88.51 E-value=1 Score=52.84 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=37.8
Q ss_pred CCC--cEEEeeceecCCCceecccCCCC-ChHHHHHC------------------------------------CCCHHHH
Q 013441 286 SMP--YFAHVSLILAPDRSKLSKRHGAT-SVGQFREM------------------------------------GYLPQAM 326 (443)
Q Consensus 286 ~~P--~f~Hlplil~~dg~KLSKR~g~~-si~~~r~~------------------------------------G~~peai 326 (443)
+.| ....+++|++.+|+||||+.|++ ...++.+. -|-++|+
T Consensus 566 ~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDal 645 (995)
T PTZ00419 566 KLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDAL 645 (995)
T ss_pred CCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHH
Confidence 566 45677899999999999999984 55555542 3789999
Q ss_pred HHHHHHhC
Q 013441 327 VNYLALLG 334 (443)
Q Consensus 327 ~n~l~~LG 334 (443)
|.+|+..+
T Consensus 646 R~~l~~~~ 653 (995)
T PTZ00419 646 RFGLLAYT 653 (995)
T ss_pred HHHHHhcC
Confidence 99998754
No 136
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=86.46 E-value=0.7 Score=53.25 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=52.5
Q ss_pred cCCcceEEecCCCCCC-----HHHHHHHHHH--cCCCCC--cEEEeeceec----CCCc---------------------
Q 013441 257 TMAISHVIRAEEHLPN-----TLRQALIYKA--LGFSMP--YFAHVSLILA----PDRS--------------------- 302 (443)
Q Consensus 257 ~m~ITHVIRG~D~l~n-----tp~q~~ly~a--Lg~~~P--~f~Hlplil~----~dg~--------------------- 302 (443)
-|-+.-.|-|.||..+ .-.|..|+.. +.-..| .....++|++ ++|+
T Consensus 518 ~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 597 (842)
T TIGR00396 518 WLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGEL 597 (842)
T ss_pred cCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcc
Confidence 4567777778887422 2233333332 122345 3455678888 8888
Q ss_pred ------eecccCCC-CChHHHHHCCCCHHHHHHHHHHhC
Q 013441 303 ------KLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (443)
Q Consensus 303 ------KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG 334 (443)
|||||.|+ +++.++.++ |.+++++-|++..+
T Consensus 598 ~~~~~~KMSKS~GN~v~p~~ii~~-ygaDalRl~~l~~~ 635 (842)
T TIGR00396 598 VVVGYEKMSKSKGNGIDPQEIVKK-HGADALRLYIMFMG 635 (842)
T ss_pred cccchhhhhhcCCCcCCHHHHHHH-cCchHHHHHHHhcC
Confidence 99999998 588888876 88999999998654
No 137
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.32 E-value=1.1 Score=51.32 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=50.9
Q ss_pred ccCCcceEEecCCCCCCHHHHHHHH----HHc---C-CCC--C--cEEEeeceecCCCceecccCCC-CChHHHHHCCCC
Q 013441 256 ATMAISHVIRAEEHLPNTLRQALIY----KAL---G-FSM--P--YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYL 322 (443)
Q Consensus 256 ~~m~ITHVIRG~D~l~ntp~q~~ly----~aL---g-~~~--P--~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~ 322 (443)
+-+-|.-=|-|.||..+ |++.+ +|| | |+. | ....-.+|+..+|+||||++|+ +++++..++ |-
T Consensus 523 yW~PVD~yigG~ehavl---HLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~-yG 598 (814)
T COG0495 523 YWYPVDLYIGGIEHAVL---HLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK-YG 598 (814)
T ss_pred cccChheeecchhHHHH---HHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHH-hC
Confidence 34566666778888644 43322 222 2 322 3 1334467788789999999998 588888776 78
Q ss_pred HHHHHHHHHHhC
Q 013441 323 PQAMVNYLALLG 334 (443)
Q Consensus 323 peai~n~l~~LG 334 (443)
++++|-|++..|
T Consensus 599 ADt~Rl~~m~~a 610 (814)
T COG0495 599 ADTVRLYIMFAA 610 (814)
T ss_pred chHHHHHHHhhC
Confidence 999999998876
No 138
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=82.80 E-value=1.8 Score=49.79 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=48.2
Q ss_pred CCcceEEecCCCCCC-----HHHHHHHHHHcC---CCCC--cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHH
Q 013441 258 MAISHVIRAEEHLPN-----TLRQALIYKALG---FSMP--YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAM 326 (443)
Q Consensus 258 m~ITHVIRG~D~l~n-----tp~q~~ly~aLg---~~~P--~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai 326 (443)
+-+...+-|.||..+ .-.|..|+. .| -..| ...|.++| ||||+.|+ +++.++.++ |.++++
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~-~~~~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~~-ygaD~l 593 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKVLRD-LGLVSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIEK-YGADTA 593 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHHHHH-hhcccCCcchhhheecCcE------EeCCCCCCCCCHHHHHHH-cChHHH
Confidence 567777778888644 222322322 22 2345 57788887 99999999 588888776 899999
Q ss_pred HHHHHHhC
Q 013441 327 VNYLALLG 334 (443)
Q Consensus 327 ~n~l~~LG 334 (443)
|-|++..|
T Consensus 594 Rl~l~~~~ 601 (805)
T PRK00390 594 RLFEMFAG 601 (805)
T ss_pred HHHHHhcC
Confidence 99998764
No 139
>PLN02563 aminoacyl-tRNA ligase
Probab=82.25 E-value=1.5 Score=51.34 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=26.8
Q ss_pred eecccCCC-CChHHHHHCCCCHHHHHHHHHHhC
Q 013441 303 KLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (443)
Q Consensus 303 KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG 334 (443)
||||++|+ +...++.++ |-++++|-|++..+
T Consensus 723 KMSKSKGNvVdP~eiI~k-YGADaLRl~ll~~a 754 (963)
T PLN02563 723 KMSKSRGNVVNPDDVVSE-YGADSLRLYEMFMG 754 (963)
T ss_pred ccccccCCcCCHHHHHHH-cCcHHHHHHHHhCC
Confidence 99999998 577787776 88999999998765
No 140
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.28 E-value=0.58 Score=54.09 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=34.2
Q ss_pred CCC--cEEEeeceecCCCceecccCCCC-ChHHHHHCCCCHHHHHHHHHHh
Q 013441 286 SMP--YFAHVSLILAPDRSKLSKRHGAT-SVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 286 ~~P--~f~Hlplil~~dg~KLSKR~g~~-si~~~r~~G~~peai~n~l~~L 333 (443)
.+| .-.-+.++++.+|+|||||.|++ +..+..++ |-+++|+-|++.-
T Consensus 583 ~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~-yGADiLRLwv~ss 632 (933)
T COG0060 583 RAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVASS 632 (933)
T ss_pred CchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHh-hCchheeeeeeec
Confidence 455 23456789999999999999995 55666554 5677787777654
No 141
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.91 E-value=22 Score=38.15 Aligned_cols=46 Identities=30% Similarity=0.384 Sum_probs=33.8
Q ss_pred CCCCceEEEeCCCCC--CcCChhhHHHHHHHHHHHHH--cCCeEEEEecCC
Q 013441 51 KVDGQVRVRFAPSPT--GNLHVGGARTALFNYLFARS--KGGKFVLRIEDT 97 (443)
Q Consensus 51 ~~~~~vr~RFAPSPT--G~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDT 97 (443)
.....|.|-|. ||+ -.||+||+|+-++---.+|- +-|-=+||+.-+
T Consensus 185 l~~KrvlVDFS-SPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHv 234 (656)
T KOG4426|consen 185 LSVKRVLVDFS-SPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHV 234 (656)
T ss_pred cceeeEEEecC-CCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccc
Confidence 33456788885 565 78999999999988777774 566677776554
No 142
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.26 E-value=22 Score=40.38 Aligned_cols=89 Identities=28% Similarity=0.498 Sum_probs=55.3
Q ss_pred CCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc-------------------------cC-----cHHHHHHH
Q 013441 63 SPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE-------------------------RS-----TKESEEAV 110 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~-------------------------R~-----~~~~~~~I 110 (443)
+.+|.||+||++.-++..+.-|. ..|+-++-+=.-|-. |. ..++++..
T Consensus 65 danG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q 144 (937)
T KOG0433|consen 65 DANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQ 144 (937)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHH
Confidence 48999999999987765443332 345544433332211 10 14566777
Q ss_pred HHHHHHcCCC--CCCCCCCCCCCCcee--ccccHHHHHHHHHHHHHcCCeeeec
Q 013441 111 LQDLSWLGLD--WDEGPGVGGDYGPYR--QSERNSLYKQYADKLLESGHVYRCF 160 (443)
Q Consensus 111 ~~dL~wLGl~--wDegp~~gg~~gpy~--QSer~~~Y~~~a~~Li~~G~AY~Cf 160 (443)
++.++..|+- |.. ||. +-+...---+...+|.++|..|+-+
T Consensus 145 ~e~F~r~gv~aDW~n---------~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~ 189 (937)
T KOG0433|consen 145 MEAFRRWGVTADWEN---------PYVTKSPSYEAAQLDIFAKLYEKGLVYRSF 189 (937)
T ss_pred HHHHHHheeeccCCC---------ceeecChHHHHHHHHHHHHHHhccceeccC
Confidence 8888889985 653 454 3333333345666899999999855
No 143
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=64.23 E-value=22 Score=39.02 Aligned_cols=221 Identities=17% Similarity=0.166 Sum_probs=111.9
Q ss_pred ccHHHHHHHHHHHHHcCCee---eecCCHHHHHHHHHHHH---hCCCCCCCCCcCCCCCHHHHHHHH----hcCCCceEE
Q 013441 138 ERNSLYKQYADKLLESGHVY---RCFCSNEELEKMKEIAK---LKQLPPVYTGKWATATDAEVQKEL----ERGTPYTYR 207 (443)
Q Consensus 138 er~~~Y~~~a~~Li~~G~AY---~Cfcs~eel~~~r~~~~---~~~~~~~Y~g~cr~ls~~e~~~~~----~~g~~~~iR 207 (443)
++.+.+....+.|.--|.-+ +.+ +.+.++...+.+. .+| -.|...| |.+|+++.- ..|.+...|
T Consensus 47 ~~~e~~~~I~~dL~wLG~~~d~~~~~-qS~~~~~~~~~a~~Li~~G--~AY~c~c---s~eel~~~R~~~~~~g~~~~~R 120 (522)
T TIGR00440 47 EDPEYVESIKRDVEWLGFKWEGKIRY-SSDYFDELYRYAEELIKKG--LAYVDEL---TPEEIREYRGTLTDPGKNSPYR 120 (522)
T ss_pred CChHHHHHHHHHHHHcCCCCCCCceE-ccccHHHHHHHHHHHHHcC--CEEeecC---CHHHHHHhhhhcccCCCCCccc
Confidence 44566666777777667655 123 3344444333322 233 4587767 466765543 234443344
Q ss_pred EecCCCCceeeeecccce-----------e--eecCCCCCCeEEEecCCccccchhhhhhcc----cCCcceEEe----c
Q 013441 208 FRVPKGGSLKISDLIRGE-----------V--SWNLDTLGDFVIMRSNGQPVYNFCVTVDDA----TMAISHVIR----A 266 (443)
Q Consensus 208 ~k~~~~~~~~~~D~v~G~-----------i--~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~----~m~ITHVIR----G 266 (443)
=..+++..-.|+.+..|+ + ..++..+.|+|+.|.+-.|... .-|+. .....|+|- |
T Consensus 121 ~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~~---~gdk~~iyPtYdfa~~vdD~l~g 197 (522)
T TIGR00440 121 DRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQ---TGTKWCIYPMYDFTHCISDAMEN 197 (522)
T ss_pred CCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEeeeeEEEEecCCCCC---CCCCeeEEeCcCCceeehhccCC
Confidence 322221112344444443 1 2224568999999987443211 01221 345566664 5
Q ss_pred CCCCCCHHHH---HHHHHHcCCCCCcEEEeeceecCCCceecccCCCC---ChHHHHHCCCCHHHHHHHHHHhCCCCCCC
Q 013441 267 EEHLPNTLRQ---ALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGAT---SVGQFREMGYLPQAMVNYLALLGWGDGTE 340 (443)
Q Consensus 267 ~D~l~ntp~q---~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~~---si~~~r~~G~~peai~n~l~~LG~~~~~~ 340 (443)
--|.-.+--+ ..+|++|+...+.+.+ |.... =..|.--.... .+..+.+.|+ .-||.++.-
T Consensus 198 ITHviRg~E~~~nt~~Y~~~~~~l~~~~~-P~~~~--F~rln~~~~kLSKRk~~~~V~~g~----------v~GWdDPRl 264 (522)
T TIGR00440 198 ITHSLCTLEFQDNRRLYDWVLDNIHIFPR-PAQYE--FSRLNLEGTVLSKRKLAQLVDDKF----------VRGWDDPRM 264 (522)
T ss_pred CceEeecHhhhhcHHHHHHHHHhcCccCC-CceEE--EEEECCCCCCcccccchhccccCc----------ccCCCCCcc
Confidence 5565555443 3789999887765543 54331 12233211112 2444444442 146765421
Q ss_pred C-------cccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhc
Q 013441 341 N-------EFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRA 380 (443)
Q Consensus 341 ~-------e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~ 380 (443)
. .-++.+.+.+....-..++.....++.+|..+|.+.+-.
T Consensus 265 ~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~ 311 (522)
T TIGR00440 265 PTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNE 311 (522)
T ss_pred ccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhh
Confidence 1 113334333333334555556678999999999998853
No 144
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.98 E-value=12 Score=43.18 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHcCCCCC--cEEEeeceecCCCceecccCCCC
Q 013441 272 NTLRQALIYKALGFSMP--YFAHVSLILAPDRSKLSKRHGAT 311 (443)
Q Consensus 272 ntp~q~~ly~aLg~~~P--~f~Hlplil~~dg~KLSKR~g~~ 311 (443)
..++.+.|-..|.-+.| ...-+|||.+..|+||||+-|++
T Consensus 560 WVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNV 601 (995)
T KOG0432|consen 560 WVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNV 601 (995)
T ss_pred HHHHHHHhhhhhcCCCCchheeechhhccccccccchhhccc
Confidence 55667766666655666 34456899999999999999984
No 145
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.48 E-value=27 Score=39.82 Aligned_cols=124 Identities=17% Similarity=0.265 Sum_probs=65.0
Q ss_pred EecCCCCCCHHHHHHHHH--HcCCCCC--cEEEeeceecCCCceecccCCCCChHHHHHCC------CCHHHHHHHHHHh
Q 013441 264 IRAEEHLPNTLRQALIYK--ALGFSMP--YFAHVSLILAPDRSKLSKRHGATSVGQFREMG------YLPQAMVNYLALL 333 (443)
Q Consensus 264 IRG~D~l~ntp~q~~ly~--aLg~~~P--~f~Hlplil~~dg~KLSKR~g~~si~~~r~~G------~~peai~n~l~~L 333 (443)
+-|.|.+.- =.|..|.- |-.-..| ...-+...++++|.||||+-|++.=-.+.-+| |-.++++.+++
T Consensus 571 LEG~DQ~rG-WFQSsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA-- 647 (937)
T KOG0433|consen 571 LEGVDQFRG-WFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVA-- 647 (937)
T ss_pred Eecchhcch-HHHHHHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeee--
Confidence 446665422 13443322 2222355 23344677999999999999996333333445 66777777666
Q ss_pred CCCCCCCC----ccc-CHHHHHh------ccccccccC---CCccccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 013441 334 GWGDGTEN----EFF-TLKQLVE------KFTIERVNK---SGAIFDSTKLRWMNGQHLRAIPSNELTKLIGE 392 (443)
Q Consensus 334 G~~~~~~~----e~~-s~~eli~------~F~l~~v~~---~~~~fd~~kL~~~n~~~l~~~~~~~l~~~~~~ 392 (443)
|....++. .++ -..|.+. +|-+..+.. .-..++...|..++..-|.++ +++.+.+.+
T Consensus 648 ~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql--~~~~~~i~e 718 (937)
T KOG0433|consen 648 GSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQL--DAIVKRIIE 718 (937)
T ss_pred cccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHH--HHHHHHHHH
Confidence 22221111 111 1122222 343333333 335578888888888777765 344444444
No 146
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.35 E-value=3.4 Score=46.31 Aligned_cols=40 Identities=30% Similarity=0.247 Sum_probs=24.5
Q ss_pred EeeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHH
Q 013441 292 HVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLA 331 (443)
Q Consensus 292 Hlplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~ 331 (443)
--.+++..||+|||||..+..=-.+.=+-|-.+|++-||.
T Consensus 590 vnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLI 629 (1070)
T KOG0434|consen 590 VNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLI 629 (1070)
T ss_pred EeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeee
Confidence 3478999999999999876311111112245666666653
No 147
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.28 E-value=27 Score=39.91 Aligned_cols=69 Identities=26% Similarity=0.288 Sum_probs=43.9
Q ss_pred CCceEEEeC-CCCCCcCChhhHHHHH---HHHHHHHHcCCeEEEE---ecCCCcccCcHHHHHHHHHHHHHcCCCCCCC
Q 013441 53 DGQVRVRFA-PSPTGNLHVGGARTAL---FNYLFARSKGGKFVLR---IEDTDLERSTKESEEAVLQDLSWLGLDWDEG 124 (443)
Q Consensus 53 ~~~vr~RFA-PSPTG~LHiG~~rtAL---~n~l~Ar~~gG~fiLR---IEDTD~~R~~~~~~~~I~~dL~wLGl~wDeg 124 (443)
+.+.-+-|+ |.-+|.||+||+.|.- |.-.|- ..+|+-+|- +-.|- --.....+.+.+.++-+|-.+|..
T Consensus 43 ~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~-rL~Gk~vLfPfgFHCTG--MPI~A~AdKLkrEie~fG~ppdf~ 118 (1080)
T KOG0437|consen 43 KPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYE-RLQGKNVLFPFGFHCTG--MPIKASADKLKREIELFGCPPDFP 118 (1080)
T ss_pred cCceeEeccccccCceeeccceeehhhhHHHHHHH-HhcCceEEeecccccCC--CccHHhHHHHHHHHHHhCCCCCCc
Confidence 445555554 7778999999999876 322333 345554443 22332 345566777888888889887754
No 148
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=48.84 E-value=50 Score=30.63 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=66.9
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcc---cC---cHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLE---RS---TKESEEAVLQDLSWLGLDWDEGPGVGG 129 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~---R~---~~~~~~~I~~dL~wLGl~wDegp~~gg 129 (443)
+-+||-| +|+||+..+.. |...--+.++-|-.-+.. ++ ..+-.+.|.+.++..+.. . -
T Consensus 4 ~~G~FdP-----~H~GHl~ii~~----a~~~~D~lii~i~s~~~~~k~~~p~~~~eR~~mi~~al~~~~~~---~----~ 67 (165)
T TIGR01527 4 YIGRFQP-----FHLGHLEVIKK----IAEEVDELIIGIGSAQESHTLENPFTAGERILMITQSLKEVGDL---T----Y 67 (165)
T ss_pred EEeccCC-----CCHHHHHHHHH----HHHHCCEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCc---e----E
Confidence 4578888 89999976554 333356666545333322 11 123334444666655511 0 0
Q ss_pred CCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCC----CCCCCCcCCCCCHHHHHHHHhcCCCce
Q 013441 130 DYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQL----PPVYTGKWATATDAEVQKELERGTPYT 205 (443)
Q Consensus 130 ~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~----~~~Y~g~cr~ls~~e~~~~~~~g~~~~ 205 (443)
...|.-..+..+.+.++++.+.-.=.+ .|++....++ .....|. +|.|+++ ..|..++.+.|.+|.+
T Consensus 68 ~~vP~~d~~~~~~w~~~v~~~~p~~D~--vf~~~~~~~~---~f~e~g~~v~~~p~~~r~--~~S~T~IR~~i~~~~~-- 138 (165)
T TIGR01527 68 YIIPIEDIERNSIWVSYVESMTPPFDV--VYSNNPLVRR---LFKEAGYEVKRPPMFNRK--EYSGTEIRRRMLNGED-- 138 (165)
T ss_pred EEEecCCccHHHHHHHHHHHhCCCCCE--EEECCHHHHH---HHHHcCCEEEECCCcCCC--cccHHHHHHHHHcCCC--
Confidence 001221224455666666655543233 3334322221 1222332 3444443 5688899999988865
Q ss_pred EEEecCC
Q 013441 206 YRFRVPK 212 (443)
Q Consensus 206 iR~k~~~ 212 (443)
|+--||+
T Consensus 139 W~~lVP~ 145 (165)
T TIGR01527 139 WEHLVPK 145 (165)
T ss_pred hhhhCCH
Confidence 6666664
No 149
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=40.84 E-value=3.3e+02 Score=26.81 Aligned_cols=107 Identities=18% Similarity=0.082 Sum_probs=63.2
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
+...|..|+.+ +.+ .++.+++ ++.|.+.+--+-+.|. .-....+.+.+.++..|+..-..- ++
T Consensus 135 ~~~fr~~p~~~---~~~---~a~~~~~--~~~~~~~v~~l~~~~~--~g~~~~~~~~~~~~~~gi~v~~~~-------~~ 197 (348)
T cd06350 135 PSFFRTVPSDT---SQA---LAIVALL--KHFGWTWVGLVYSDDD--YGRSGLSDLEEELEKNGICIAFVE-------AI 197 (348)
T ss_pred CCeeEecCCcH---HHH---HHHHHHH--HHCCCeEEEEEEecch--hHHHHHHHHHHHHHHCCCcEEEEE-------Ec
Confidence 56678888764 233 3444443 4556665444433222 234455667777888887743210 12
Q ss_pred eccccHHHHHHHHHHHHHcC-CeeeecCCHHHHHHHHHHHHhCCC
Q 013441 135 RQSERNSLYKQYADKLLESG-HVYRCFCSNEELEKMKEIAKLKQL 178 (443)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G-~AY~Cfcs~eel~~~r~~~~~~~~ 178 (443)
....-...|...+++|.+.+ .+..++|..++....-++....+.
T Consensus 198 ~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~~~~~~~~~~a~~~g~ 242 (348)
T cd06350 198 PPSSTEEDIKRILKKLKSSTARVIVVFGDEDDALRLFCEAYKLGM 242 (348)
T ss_pred cCCCcHHHHHHHHHHHHhCCCcEEEEEeCcHHHHHHHHHHHHhCC
Confidence 22112356888999999998 799988888777665444555444
No 150
>PF08892 YqcI_YcgG: YqcI/YcgG family; InterPro: IPR014988 This group of proteins are functionally uncharacterised. They include YqcI and YcgG from Bacillus subtilis. The alignment contains a conserved FPC motif at the N terminus and CPF at the C terminus.
Probab=36.50 E-value=1.5e+02 Score=28.73 Aligned_cols=72 Identities=26% Similarity=0.293 Sum_probs=59.8
Q ss_pred CCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcC---CeEEEEecCCCcccCcHHHHHHHHHHHHHcC----CCCCCC
Q 013441 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKG---GKFVLRIEDTDLERSTKESEEAVLQDLSWLG----LDWDEG 124 (443)
Q Consensus 53 ~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~g---G~fiLRIEDTD~~R~~~~~~~~I~~dL~wLG----l~wDeg 124 (443)
.+.++..|+.+|+..-.+..+..+|..|+-.-..- -.||+-++-.......++|++...+-|++|- -.|++.
T Consensus 28 ~~~l~y~f~~~~~~~~~~~~l~~~L~~y~~~~~~~~~~~slvvfF~~~~~~~s~~~ye~~~W~~Lq~Lh~~D~~pWp~~ 106 (219)
T PF08892_consen 28 KGQLRYGFIGDPRSPDDDKELADDLREYLEEYRDMGKFTSLVVFFEPPEKELSEEEYEELFWDVLQYLHDRDPKPWPED 106 (219)
T ss_pred CCCeEEEEeCCCCChhhHHHHHHHHHHHHHHhhcccccceEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCcCCCcc
Confidence 57899999999999999999999999998765433 3688888888788999999999999999884 457643
No 151
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=35.82 E-value=2.9e+02 Score=28.43 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=32.7
Q ss_pred HHcCCCCCcEEEeeceecCC-CceecccCCCCChHHHHHCCCCHHHHHHHHH
Q 013441 281 KALGFSMPYFAHVSLILAPD-RSKLSKRHGATSVGQFREMGYLPQAMVNYLA 331 (443)
Q Consensus 281 ~aLg~~~P~f~Hlplil~~d-g~KLSKR~g~~si~~~r~~G~~peai~n~l~ 331 (443)
..||++.|.....|++-+.. |.|||++.....|+-+ =.|+.+..-+.
T Consensus 199 p~l~ykKrihLmnpMvPGL~q~~KMSsSd~~SkIdll----D~~~~V~kKI~ 246 (360)
T KOG2144|consen 199 PDLGYKKRIHLMNPMVPGLAQGEKMSSSDPLSKIDLL----DEPADVNKKIK 246 (360)
T ss_pred hhhCcccceeecCCCCccccccCccccCCcccccccc----cCHHHHHHHHH
Confidence 57899977766668888876 8899999987655332 14556555443
No 152
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=34.86 E-value=32 Score=31.97 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCeeeecCCH
Q 013441 144 KQYADKLLESGHVYRCFCSN 163 (443)
Q Consensus 144 ~~~a~~Li~~G~AY~Cfcs~ 163 (443)
.|.|++|.+.|+.|+|-||.
T Consensus 117 ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 117 LELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred HHHHHHHHhcCcEEEeeccc
Confidence 47999999999999998875
No 153
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.48 E-value=1.1e+02 Score=33.67 Aligned_cols=92 Identities=22% Similarity=0.344 Sum_probs=53.9
Q ss_pred CCCeEEEecCCcccc---chhhhhhccc----CCcceEE-ecCCCCCCHHHHH-HHHHHcCCCC-CcEEEeeceecCCCc
Q 013441 233 LGDFVIMRSNGQPVY---NFCVTVDDAT----MAISHVI-RAEEHLPNTLRQA-LIYKALGFSM-PYFAHVSLILAPDRS 302 (443)
Q Consensus 233 ~~D~VL~RsDG~PtY---~fA~vVDD~~----m~ITHVI-RG~D~l~ntp~q~-~ly~aLg~~~-P~f~Hlplil~~dg~ 302 (443)
.+=-++.|+||.-.| ++|.++|-.. -.+-.|+ ||.+- +..|. .+.+.+|.+. -.+-|++.=+ +.
T Consensus 293 ~~~~~V~ksdgttLYltRdiaaal~Rl~~y~fdr~iYVvd~~Q~~---hf~~lf~ilk~mg~~~a~~~qHV~~G~---v~ 366 (567)
T KOG1195|consen 293 AGKAVVQKSDGTTLYLTRDIAAALDRLEKYSFDRLIYVVDSQQKD---HFCQLFEILKKMGFDWAKKLQHVNFGR---VQ 366 (567)
T ss_pred cceEEEEcCCCceehHHHHHHHHHHHHHhcCcceEEEEechHHHH---HHHHHHHHHHHhCchhhhhcceecccc---cc
Confidence 355678999998877 6888876322 1223333 22321 12232 5568888773 4578888633 35
Q ss_pred eecccCCCC-ChHHHHHCCCCHHHHHHHHHH
Q 013441 303 KLSKRHGAT-SVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 303 KLSKR~g~~-si~~~r~~G~~peai~n~l~~ 332 (443)
-||.|+|.+ .+++..+. .-+-+.+.++.
T Consensus 367 GmsTRkG~~~fl~dil~e--~re~m~e~M~s 395 (567)
T KOG1195|consen 367 GMSTRKGKVVFLDDILEE--AREQMLEVMAS 395 (567)
T ss_pred cccccCCceeeHHHHHHH--HHHHHHHHHHh
Confidence 799999985 45555444 23444555543
No 154
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=27.72 E-value=5e+02 Score=24.15 Aligned_cols=106 Identities=19% Similarity=0.137 Sum_probs=58.5
Q ss_pred CCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCe-EEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 013441 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGK-FVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDY 131 (443)
Q Consensus 53 ~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~-fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~ 131 (443)
..+...|+.|+++ ..-.|+.+++ +++|.+ +.+-.+|.+-- ....+.+.+.++..|+..-...
T Consensus 113 ~~~~~~~~~p~~~------~~~~a~~~~l--~~~~w~~v~~v~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~------ 175 (298)
T cd06269 113 QFPSFLRTVPSDS------SQAQAIVDLL--KHFGWTWVGLVYSDDDYG---RRLLELLEEELEKNGICVAFVE------ 175 (298)
T ss_pred hCCCeEecCCCcH------HHHHHHHHHH--HHCCCeEEEEEEecchhh---HHHHHHHHHHHHHCCeeEEEEE------
Confidence 3467899999874 3445666654 445554 44444555422 2233333344444455422100
Q ss_pred CceeccccHHHHHHHHHHHHHcC-CeeeecCCHHHHHHHHHHHHhCCC
Q 013441 132 GPYRQSERNSLYKQYADKLLESG-HVYRCFCSNEELEKMKEIAKLKQL 178 (443)
Q Consensus 132 gpy~QSer~~~Y~~~a~~Li~~G-~AY~Cfcs~eel~~~r~~~~~~~~ 178 (443)
.+.... ..+...+++|.+.+ .+...+|+.+++...-+++...|.
T Consensus 176 -~~~~~~--~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~ 220 (298)
T cd06269 176 -SIPDGS--EDIRRLLKELKSSTARVIVVFSSEEDALRLLEEAVELGM 220 (298)
T ss_pred -EcCCCH--HHHHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHcCC
Confidence 111111 56888999999998 777777776777655444555544
No 155
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=27.33 E-value=83 Score=23.51 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHHHHcCCeeeecCCHHHHHHH
Q 013441 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKM 169 (443)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~ 169 (443)
-+|+..|..+.++|.++|.-+. |.++|.++
T Consensus 8 i~RL~~Y~r~L~~l~~~G~~~v---SS~~La~~ 37 (50)
T PF06971_consen 8 IRRLPLYLRYLEQLKEEGVERV---SSQELAEA 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEE----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeeE---CHHHHHHH
Confidence 4699999999999999999886 57787654
No 156
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=26.93 E-value=2e+02 Score=26.85 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=22.4
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCC
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTD 98 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD 98 (443)
+-+||-| +|+||+..+.. |.+.-.+.++-|-.-+
T Consensus 4 ~~GrF~P-----~H~GHl~~i~~----a~~~~~~vii~i~s~~ 37 (181)
T cd02168 4 YIGRFQP-----FHNGHLAVVLI----ALEKAKKVIILIGSAR 37 (181)
T ss_pred EeeccCC-----CCHHHHHHHHH----HHHHCCeEEEEeCCCC
Confidence 4578988 79999976554 3333347777665543
No 157
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=26.40 E-value=6.8e+02 Score=25.20 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=54.8
Q ss_pred CceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 013441 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (443)
Q Consensus 54 ~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gp 133 (443)
.+...|.+|+.+ ..+ .++.+++ +++|-+.+.-+-|.+.. .-....+.+.+.++..|+.--.. -
T Consensus 111 ~~~~fr~~~~~~---~~~---~a~~~~l--~~~~~~~v~ii~~~~~~-~g~~~~~~~~~~~~~~G~~v~~~--------~ 173 (389)
T cd06352 111 YPTLTRTLPPAR---KLG---EAVLALL--RWFNWHVAVVVYSDDSE-NCFFTLEALEAALREFNLTVSHV--------V 173 (389)
T ss_pred CCceeecCCcHH---HHH---HHHHHHH--HHcCceEEEEEEecCCc-cHHHHHHHHHHHHHhcCCeEEEE--------E
Confidence 356788888765 333 3555554 34555666655544432 22344567777777788763210 0
Q ss_pred eeccc-cHHHHHHHHHHHHHcCCeeeecCCHHHHHHH
Q 013441 134 YRQSE-RNSLYKQYADKLLESGHVYRCFCSNEELEKM 169 (443)
Q Consensus 134 y~QSe-r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~ 169 (443)
+++.. ....+...++++.+.+.++...+..++....
T Consensus 174 ~~~~~~~~~d~~~~l~~i~~~~~vii~~~~~~~~~~~ 210 (389)
T cd06352 174 FMEDNSGAEDLLEILQDIKRRSRIIIMCGSSEDVREL 210 (389)
T ss_pred EecCCccchhHHHHHHHhhhcceEEEEECCHHHHHHH
Confidence 11111 1345667778887777666655565665544
No 158
>COG2969 SspB Stringent starvation protein B [General function prediction only]
Probab=24.12 E-value=40 Score=30.74 Aligned_cols=21 Identities=43% Similarity=0.792 Sum_probs=19.4
Q ss_pred CCCceEEEeCCCCCCcCChhh
Q 013441 52 VDGQVRVRFAPSPTGNLHVGG 72 (443)
Q Consensus 52 ~~~~vr~RFAPSPTG~LHiG~ 72 (443)
..++|+.--||+.||.|||||
T Consensus 46 kDgqIVLNvs~~Av~nL~l~N 66 (155)
T COG2969 46 RDGQIVLNIAPRAVGNLELGN 66 (155)
T ss_pred cCCeEEEEeCcccccceEecC
Confidence 467899999999999999998
No 159
>COG4720 Predicted membrane protein [Function unknown]
Probab=23.76 E-value=42 Score=31.67 Aligned_cols=26 Identities=42% Similarity=0.741 Sum_probs=21.5
Q ss_pred CCCCCcCChhhHHHHHHHHHHHHHcC
Q 013441 62 PSPTGNLHVGGARTALFNYLFARSKG 87 (443)
Q Consensus 62 PSPTG~LHiG~~rtAL~n~l~Ar~~g 87 (443)
|-|+|++|+|.+--++...+|....|
T Consensus 31 p~~~~~i~L~da~i~las~lfGs~~G 56 (177)
T COG4720 31 PIPNGFLTLGDAGIALASFLFGSRAG 56 (177)
T ss_pred CCCCCeeeHHHHHHHHHHHHHcchHH
Confidence 44459999999999999999976654
No 160
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.44 E-value=7.1e+02 Score=26.79 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=65.6
Q ss_pred CcceEEecCCCCCC-HHHHHHHHHHcCCCCCcEE-EeeceecCCCceecccCCCC-ChHHHHHCCCCHHHHHHHHHHhCC
Q 013441 259 AISHVIRAEEHLPN-TLRQALIYKALGFSMPYFA-HVSLILAPDRSKLSKRHGAT-SVGQFREMGYLPQAMVNYLALLGW 335 (443)
Q Consensus 259 ~ITHVIRG~D~l~n-tp~q~~ly~aLg~~~P~f~-Hlplil~~dg~KLSKR~g~~-si~~~r~~G~~peai~n~l~~LG~ 335 (443)
+++.=|-|.|..-| |.-.-+|-+..+.+.-.|+ -+|++...+|.|+-|+.|+. +++- .--.|=.+-.|...+
T Consensus 227 g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vfGlT~PLlTsstG~KlGKSaGnAvWLdp---~~tspy~lYQfF~~~-- 301 (467)
T KOG2623|consen 227 GCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVFGLTFPLLTSSTGAKLGKSAGNAVWLDP---SKTSPYHLYQFFASL-- 301 (467)
T ss_pred CeeEEecccccccccchHHHHHHHhcccccceeeeeeeeEecCcchhhccCCCceEEecC---ccCCcHHHHHHHHhC--
Confidence 77777889997765 4444455566665444454 67999999999999999872 3321 113566666776654
Q ss_pred CCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhcC
Q 013441 336 GDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAI 381 (443)
Q Consensus 336 ~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~~ 381 (443)
+ + -..+.++.-|.+ .+.+.+..+=..|++.-
T Consensus 302 -p-D----d~v~k~LklfTf---------l~l~eI~~I~~~H~k~P 332 (467)
T KOG2623|consen 302 -P-D----DDVEKFLKLFTF---------LPLEEIKQILEEHRKEP 332 (467)
T ss_pred -c-h----hHHHHHHHHHhc---------CCHHHHHHHHHHHhcCh
Confidence 1 1 125666666665 56666666666666543
No 161
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=22.97 E-value=4.8e+02 Score=26.74 Aligned_cols=106 Identities=11% Similarity=0.124 Sum_probs=60.1
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCe-E--EEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGK-F--VLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDY 131 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~-f--iLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~ 131 (443)
+...|.+|+.+ +.+.+...+ .+++|-+ + |+.-+|.+..+.--...+.+.+.++..|+.-...
T Consensus 118 ~~~~R~~p~~~---~~~~a~~~~-----~~~~~w~~va~ii~~~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~------- 182 (405)
T cd06385 118 ATITRTGPTHK---KLGEFVLHI-----HQHFGWRSHAMLIYSDNKVDDRPCYFAMEGLYMELKKNNITVVDL------- 182 (405)
T ss_pred cceEEecCchH---HHHHHHHHH-----HHhCCCeEEEEEEEecCcccccchHHHHHHHHHHHHhCCeEEEEe-------
Confidence 45679888664 445444333 3445554 2 2333334332322223566777788888764211
Q ss_pred CceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCC
Q 013441 132 GPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQ 177 (443)
Q Consensus 132 gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~ 177 (443)
.+... -...+...+++|.+.+.++.+.|..++....-+++.+.|
T Consensus 183 -~~~~~-~~~d~~~~l~~ik~~~~iii~~~~~~~~~~i~~~a~~~g 226 (405)
T cd06385 183 -VFEED-DLINYTTLLQDIKQKGRVIYVCCSPDIFRRLMLQFWREG 226 (405)
T ss_pred -eccCC-chhhHHHHHHHHhhcceEEEEeCCHHHHHHHHHHHHHcC
Confidence 11111 134577888888888999999898887765544444434
No 162
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.66 E-value=27 Score=39.88 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=38.8
Q ss_pred cceEEecCCCCCCHH-----HHHHHHHHcCCCCCcEEEeeceecCCCceecccCCCC-ChHHHHHCCCCHHHHHHHHHHh
Q 013441 260 ISHVIRAEEHLPNTL-----RQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGAT-SVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 260 ITHVIRG~D~l~ntp-----~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~~-si~~~r~~G~~peai~n~l~~L 333 (443)
|.--+-|.|++.|-- -|..|+.-=.|+.-..+.--|++ ++.||||+.|+. ++++=.+. +..++.+-.|+-.
T Consensus 664 iDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmL--NsEKMSKSTGNfmTL~qaieK-Fgad~tRlalAda 740 (1080)
T KOG0437|consen 664 IDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLML--NSEKMSKSTGNFMTLEQAIEK-FGADGTRLALADA 740 (1080)
T ss_pred eeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEe--cchhhccccCCeeeHHHHHHH-hCccceeeeeecc
Confidence 333344888887621 24444443345443444333444 578999999994 55443333 3444555555554
Q ss_pred C
Q 013441 334 G 334 (443)
Q Consensus 334 G 334 (443)
|
T Consensus 741 G 741 (1080)
T KOG0437|consen 741 G 741 (1080)
T ss_pred c
Confidence 4
No 163
>cd00498 Hsp33 Heat shock protein 33 (Hsp33): Cytosolic protein that acts as a molecular chaperone under oxidative conditions. In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat shock), the Cys are reversibly oxidized to disulfide bonds, which causes the chaperone activity to be turned on. Hsp33 is homodimeric in its functional form.
Probab=20.99 E-value=1.6e+02 Score=29.34 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=24.8
Q ss_pred HHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcC
Q 013441 151 LESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERG 201 (443)
Q Consensus 151 i~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g 201 (443)
-++--.|.|.||++.+..+= ..|+.+|+++.++++
T Consensus 224 ~~~~v~f~C~CS~er~~~~L----------------~~Lg~~El~~i~~e~ 258 (275)
T cd00498 224 EKQPVRFRCDCSRERVAAAL----------------LTLGKEELADMIEED 258 (275)
T ss_pred cCCCcCeeCCCCHHHHHHHH----------------HhCCHHHHHHHHHcC
Confidence 34556899999999887542 246788888776654
No 164
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=20.98 E-value=2.9e+02 Score=25.98 Aligned_cols=58 Identities=28% Similarity=0.295 Sum_probs=35.2
Q ss_pred CceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCccc------CcHHHHHHHHHHHHHcCCC
Q 013441 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLER------STKESEEAVLQDLSWLGLD 120 (443)
Q Consensus 54 ~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R------~~~~~~~~I~~dL~wLGl~ 120 (443)
+=+.+||.| +|.||+.+... |-..-...|+-|--.+..+ ...+-...|.+.|+-.|++
T Consensus 6 gv~~GRFqP-----~H~GHl~vi~~----al~~vDeliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~ 69 (172)
T COG1056 6 GVYFGRFQP-----LHTGHLYVIKR----ALSKVDELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLD 69 (172)
T ss_pred EEEEeccCC-----ccHhHHHHHHH----HHHhCCEEEEEEccCcccccccCCCCccchhHHHHHHHHhcCCC
Confidence 347899999 89999986544 3344666666554433222 2234445556667666665
No 165
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=20.32 E-value=1.6e+02 Score=24.43 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHhCCCCCCCCc-ccCHHHHHhc
Q 013441 320 GYLPQAMVNYLALLGWGDGTENE-FFTLKQLVEK 352 (443)
Q Consensus 320 G~~peai~n~l~~LG~~~~~~~e-~~s~~eli~~ 352 (443)
+-.|++|++.|..++....+..+ .+|+++|++.
T Consensus 6 ~A~~e~I~~AL~~~~~~~~~~~~~~it~~dL~~~ 39 (87)
T PF13331_consen 6 HASPEAIREALENARTEDEEPKESEITWEDLIEL 39 (87)
T ss_pred CCCHHHHHHHHHHhCccccCCccCcCCHHHHHHC
Confidence 35899999999998876554443 5999999864
Done!