Query 013441
Match_columns 443
No_of_seqs 292 out of 2321
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gri_A Glutamate--tRNA ligase; 100.0 3E-116 9E-121 933.8 41.3 385 53-437 22-411 (512)
2 2ja2_A Glutamyl-tRNA synthetas 100.0 1E-113 4E-118 907.7 39.1 380 53-434 4-388 (498)
3 1j09_A Glutamyl-tRNA synthetas 100.0 2E-111 6E-116 886.6 40.3 376 55-437 1-377 (468)
4 4g6z_A Glutamate-tRNA ligase; 100.0 3E-112 9E-117 893.5 30.1 381 47-437 17-399 (490)
5 2cfo_A Glutamyl-tRNA synthetas 100.0 5E-108 2E-112 864.7 41.2 375 55-437 1-384 (492)
6 3afh_A Glutamyl-tRNA synthetas 100.0 3E-108 1E-112 865.2 32.1 365 54-437 24-389 (488)
7 2o5r_A Glutamyl-tRNA synthetas 100.0 2E-104 7E-109 836.4 39.5 381 55-437 13-395 (481)
8 3al0_C Glutamyl-tRNA(Gln) amid 100.0 2E-103 7E-108 845.4 29.2 365 54-437 128-493 (592)
9 1nzj_A Hypothetical protein YA 100.0 5.5E-86 1.9E-90 658.0 20.7 282 53-364 3-289 (298)
10 1qtq_A GLNRS, protein (glutami 100.0 8.5E-81 2.9E-85 660.4 18.9 323 37-387 8-375 (553)
11 2hz7_A Glutaminyl-tRNA synthet 100.0 5.5E-77 1.9E-81 654.5 18.0 311 37-375 48-396 (851)
12 3aii_A Glutamyl-tRNA synthetas 100.0 1.4E-74 4.8E-79 612.8 27.0 273 53-380 94-399 (553)
13 1irx_A Lysyl-tRNA synthetase; 100.0 4.1E-46 1.4E-50 396.6 -1.5 342 55-435 21-423 (523)
14 1li5_A Cysrs, cysteinyl-tRNA s 99.9 2.4E-23 8.3E-28 218.4 16.3 236 61-351 29-311 (461)
15 2dlc_X Tyrosyl-tRNA synthetase 99.9 1.7E-23 5.7E-28 215.6 13.9 200 55-333 41-253 (394)
16 2csx_A Methionyl-tRNA syntheta 99.9 3.7E-23 1.3E-27 218.1 16.1 263 56-351 8-341 (497)
17 1iq0_A Arginyl-tRNA synthetase 99.9 5.3E-23 1.8E-27 221.9 14.0 254 55-375 104-467 (592)
18 3tqo_A Cysteinyl-tRNA syntheta 99.9 4.7E-22 1.6E-26 208.2 16.9 236 61-349 32-312 (462)
19 2d5b_A Methionyl-tRNA syntheta 99.9 9.3E-22 3.2E-26 207.3 15.7 255 58-351 8-343 (500)
20 1n3l_A Tyrosyl-tRNA synthetase 99.8 1.5E-19 5E-24 184.9 18.3 251 54-386 36-309 (372)
21 3c8z_A Cysteinyl-tRNA syntheta 99.8 6.9E-20 2.4E-24 189.7 15.1 247 59-351 44-337 (414)
22 3fnr_A Arginyl-tRNA synthetase 99.8 3.4E-19 1.2E-23 186.9 15.8 97 234-331 206-313 (464)
23 2cyb_A Tyrosyl-tRNA synthetase 99.8 1.2E-19 4E-24 182.4 11.7 217 55-353 34-258 (323)
24 3sp1_A Cysteinyl-tRNA syntheta 99.8 2.8E-18 9.6E-23 180.9 18.9 236 61-349 49-343 (501)
25 1f7u_A Arginyl-tRNA synthetase 99.7 4E-18 1.4E-22 184.2 13.3 249 53-379 142-490 (607)
26 4dlp_A Aminoacyl-tRNA syntheta 99.7 3.6E-17 1.2E-21 174.2 14.4 263 56-352 28-368 (536)
27 3h99_A Methionyl-tRNA syntheta 99.7 1.9E-16 6.4E-21 169.5 18.3 279 56-351 21-392 (560)
28 2x1l_A Methionyl-tRNA syntheta 99.6 9.3E-16 3.2E-20 162.6 13.6 257 59-351 18-356 (524)
29 3kfl_A Methionyl-tRNA syntheta 99.6 2E-15 6.8E-20 161.9 11.7 264 56-352 29-386 (564)
30 2zue_A Arginyl-tRNA synthetase 99.5 2.2E-14 7.6E-19 155.6 13.6 257 53-375 118-501 (629)
31 2g36_A Tryptophanyl-tRNA synth 99.5 1.7E-13 5.8E-18 138.6 17.0 237 55-379 12-273 (340)
32 2el7_A Tryptophanyl-tRNA synth 99.4 2.5E-12 8.7E-17 129.8 15.4 233 63-385 9-269 (337)
33 2cya_A Tyrosyl-tRNA synthetase 99.4 1.5E-12 5.1E-17 132.7 12.7 256 55-390 37-330 (364)
34 1yi8_B Tryptophanyl-tRNA synth 99.4 2E-12 6.7E-17 131.3 11.0 235 55-379 24-283 (351)
35 1i6k_A TRPRS, tryptophanyl-tRN 99.4 3E-12 1E-16 128.8 11.9 191 63-333 9-220 (328)
36 2yy5_A Tryptophanyl-tRNA synth 99.3 2.4E-12 8.2E-17 130.5 11.0 196 63-332 12-229 (348)
37 1rqg_A Methionyl-tRNA syntheta 99.3 8.5E-12 2.9E-16 137.4 15.1 89 61-158 10-119 (722)
38 3u1f_A Methionyl-tRNA syntheta 99.3 1.1E-11 3.6E-16 131.8 15.4 89 61-158 17-125 (542)
39 2zp1_A Tyrosyl-tRNA synthetase 99.3 1.8E-11 6E-16 122.5 14.9 211 55-354 30-249 (314)
40 3tzl_A Tryptophanyl-tRNA synth 99.2 3.3E-10 1.1E-14 113.7 14.9 237 63-391 11-270 (322)
41 3jxe_A Tryptophanyl-tRNA synth 98.8 7.7E-08 2.6E-12 98.8 14.9 192 55-332 73-278 (392)
42 3a04_A Tryptophanyl-tRNA synth 98.8 1.9E-08 6.4E-13 102.8 10.2 193 62-332 77-281 (372)
43 2cyc_A Tyrosyl-tRNA synthetase 98.7 6.1E-08 2.1E-12 99.1 11.9 252 63-392 41-345 (375)
44 2ip1_A Tryptophanyl-tRNA synth 98.7 1.1E-07 3.8E-12 98.8 13.8 205 55-332 102-320 (432)
45 3hzr_A Tryptophanyl-tRNA synth 98.7 6.2E-08 2.1E-12 99.3 11.7 200 54-336 81-298 (386)
46 1r6t_A Tryptophanyl-tRNA synth 98.7 2.1E-07 7.3E-12 97.8 14.7 203 55-332 155-374 (477)
47 1h3f_A Tyrosyl-tRNA synthetase 98.6 2.6E-07 8.9E-12 96.0 12.8 199 54-333 36-257 (432)
48 3hv0_A Tryptophanyl-tRNA synth 98.6 7.1E-07 2.4E-11 91.7 15.8 67 261-333 222-292 (393)
49 2j5b_A Tyrosyl-tRNA synthetase 98.6 1.5E-07 5E-12 95.4 9.2 195 63-333 48-258 (348)
50 3foc_A Tryptophanyl-tRNA synth 98.5 2.7E-07 9.1E-12 96.2 10.2 240 54-333 90-359 (451)
51 2jan_A Tyrosyl-tRNA synthetase 98.5 4.1E-07 1.4E-11 94.5 11.4 104 259-380 187-290 (432)
52 3tze_A Tryptophanyl-tRNA synth 98.5 1.6E-06 5.4E-11 89.4 14.1 194 54-332 100-314 (406)
53 1r6u_A Tryptophanyl-tRNA synth 98.4 1.5E-06 5.1E-11 90.4 13.7 203 54-332 107-327 (437)
54 3sz3_A Tryptophanyl-tRNA synth 98.4 1.2E-07 4.1E-12 95.7 5.0 92 63-170 14-111 (341)
55 3prh_A Tryptophanyl-tRNA synth 98.4 6.1E-07 2.1E-11 92.0 9.8 92 61-168 41-138 (388)
56 3n9i_A Tryptophanyl-tRNA synth 98.4 3.4E-07 1.1E-11 92.6 6.9 191 63-332 23-234 (346)
57 3vgj_A Tyrosyl-tRNA synthetase 98.4 2.5E-06 8.6E-11 87.1 13.2 84 244-333 185-273 (373)
58 2yxn_A Tyrosyl-tRNA synthetase 98.4 3.5E-07 1.2E-11 91.6 6.7 71 259-332 191-262 (322)
59 3i05_A Tryptophanyl-tRNA synth 98.3 1.6E-06 5.3E-11 89.2 8.4 67 260-332 225-294 (395)
60 1jil_A Tyrrs, tyrosyl-tRNA syn 98.3 2.7E-06 9.4E-11 88.1 10.3 116 245-380 168-289 (420)
61 2pid_A Tyrosyl-tRNA synthetase 98.2 1.1E-06 3.9E-11 89.1 6.9 115 245-379 192-311 (356)
62 2ts1_A Tyrosyl-tRNA synthetase 98.2 2E-06 6.7E-11 89.1 7.2 117 245-381 167-289 (419)
63 3p0j_A Tyrosyl-tRNA synthetase 98.1 2.4E-05 8.4E-10 85.6 14.9 197 55-333 40-256 (690)
64 1y42_X Tyrosyl-tRNA synthetase 98.0 1.5E-05 5.2E-10 81.8 9.9 102 259-380 232-351 (392)
65 2v0c_A Aminoacyl-tRNA syntheta 97.9 1.2E-05 4.1E-10 90.4 7.4 94 56-158 36-151 (878)
66 4arc_A Leucine--tRNA ligase; l 97.9 2.2E-05 7.5E-10 88.2 8.4 96 56-158 56-171 (880)
67 1wkb_A Leucyl-tRNA synthetase; 97.8 3.1E-05 1E-09 86.2 8.4 96 56-158 37-178 (810)
68 1ile_A Ilers, isoleucyl-tRNA s 97.6 2.1E-05 7.1E-10 87.8 3.3 90 60-158 45-173 (821)
69 1ffy_A Isoleucyl-tRNA syntheta 97.6 8.7E-05 3E-09 83.8 7.4 93 57-158 52-178 (917)
70 1gax_A Valrs, valyl-tRNA synth 97.5 0.00022 7.6E-09 79.9 9.6 96 56-158 37-168 (862)
71 1wz2_A Leucyl-tRNA synthetase; 97.3 0.00016 5.6E-09 82.0 5.2 94 56-158 37-178 (967)
72 1ffy_A Isoleucyl-tRNA syntheta 96.1 0.014 4.7E-07 65.9 9.4 87 258-349 547-638 (917)
73 1ile_A Ilers, isoleucyl-tRNA s 95.2 0.045 1.5E-06 60.9 9.0 88 258-349 543-635 (821)
74 1gax_A Valrs, valyl-tRNA synth 93.7 0.1 3.5E-06 58.5 7.6 89 258-349 480-572 (862)
75 1wkb_A Leucyl-tRNA synthetase; 93.2 0.11 3.8E-06 57.6 6.9 75 258-334 602-681 (810)
76 1wz2_A Leucyl-tRNA synthetase; 93.0 0.17 5.9E-06 57.3 8.0 75 258-334 602-681 (967)
77 3p0j_A Tyrosyl-tRNA synthetase 91.0 0.72 2.5E-05 50.4 9.7 78 53-139 380-468 (690)
78 4arc_A Leucine--tRNA ligase; l 90.0 0.41 1.4E-05 53.8 6.9 78 256-334 540-670 (880)
79 2v0c_A Aminoacyl-tRNA syntheta 88.9 0.88 3E-05 51.1 8.5 45 302-349 636-681 (878)
No 1
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=2.6e-116 Score=933.81 Aligned_cols=385 Identities=41% Similarity=0.737 Sum_probs=369.7
Q ss_pred CCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 013441 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (443)
Q Consensus 53 ~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~g 132 (443)
.++|||||||||||+||||||||||+||++||++||+|||||||||++|++++++++|++||+||||+|||||.+||+||
T Consensus 22 ~~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~ 101 (512)
T 4gri_A 22 MLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYA 101 (512)
T ss_dssp --CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTC
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 013441 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (443)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~ 212 (443)
||+||+|+++|++++++|+++|+||+||||++|+++.|+.+...+.+|.|++.|++++.++..+...+|.++++|||+|.
T Consensus 102 py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~ 181 (512)
T 4gri_A 102 PYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPL 181 (512)
T ss_dssp CCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCS
T ss_pred CccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999998
Q ss_pred CCceeeeecccceeeecCC-CCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEE
Q 013441 213 GGSLKISDLIRGEVSWNLD-TLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFA 291 (443)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~-~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~ 291 (443)
++.+.|+|.++|++.+... ..+|+||+|+||+|||||||||||++|||||||||+||++|||+|++||++|||++|.|+
T Consensus 182 ~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg~~~P~y~ 261 (512)
T 4gri_A 182 EGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKWKPPIYC 261 (512)
T ss_dssp SCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEE
T ss_pred cCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcCCCCCeEE
Confidence 8899999999999998765 457999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHH
Q 013441 292 HVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLR 371 (443)
Q Consensus 292 Hlplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~ 371 (443)
|+|+|++.+|+|||||+|+.+|.+||++||+|+||+|||++|||++++++|+||++||++.|+++++++++++||++||.
T Consensus 262 H~pli~~~~g~kLSKR~~~~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~ 341 (512)
T 4gri_A 262 HLPMVMGNDGQKLSKRHGSTALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKNDLEQFFSIEKINKSPAIFDYHKLD 341 (512)
T ss_dssp EECCCBCTTSSBCCTTTSCCBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHHHHHHCCGGGBCSSCCBCCHHHHH
T ss_pred ecchhccccccccCcccccccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHHHHHHHHhcCCCCCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHcCCCCCC----CchHHHHHHHHHhhccccccchhhhccccccCcc
Q 013441 372 WMNGQHLRAIPSNELTKLIGERWKSTGILTES----KGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPL 437 (443)
Q Consensus 372 ~~n~~~l~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 437 (443)
|||++||++++.+++.+++.|++++.|+.... +.+++.+++.++|+|++++.|+.+.+.|||..|.
T Consensus 342 ~~N~~~i~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~l~k~r~~~l~di~~~~~~ff~~~~ 411 (512)
T 4gri_A 342 FFNSYYIREKKDEDLFNLLLPFFQKKGYVSKPSTLEENQKLKLLIPLIKSRIKKLSDALNMTKFFYEDIK 411 (512)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHHHHHTTCSSTTHHHHHTHHHHSCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcCCcccccchhhHHHHHHHHHHHHhhcccHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999886432 2468999999999999999999999999998653
No 2
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=1.1e-113 Score=907.67 Aligned_cols=380 Identities=39% Similarity=0.660 Sum_probs=365.8
Q ss_pred CCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 013441 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (443)
Q Consensus 53 ~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~g 132 (443)
.++|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|++||+||||+|||||++||+||
T Consensus 4 ~~~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~ 83 (498)
T 2ja2_A 4 TETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYG 83 (498)
T ss_dssp CCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTC
T ss_pred CCCeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 013441 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (443)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~ 212 (443)
||+||+|+++|++++++|+++|+||+||||++||+++| .+...+.+|.|+|+||+++.+|..+...+|.+++||||+|
T Consensus 84 ~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r-~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~- 161 (498)
T 2ja2_A 84 PYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARH-VAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMP- 161 (498)
T ss_dssp CCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHH-HHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCC-
T ss_pred CeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHH-HHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECC-
Confidence 99999999999999999999999999999999999998 6767778899999999999999988888999999999999
Q ss_pred CCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHc-----CCCC
Q 013441 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL-----GFSM 287 (443)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aL-----g~~~ 287 (443)
++.+.|+|+++|++.+++..++||||+|+||+|||||||||||++|||||||||+||++|||+|++||++| ||++
T Consensus 162 ~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~g~g~~~ 241 (498)
T 2ja2_A 162 DDDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERI 241 (498)
T ss_dssp SSCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHTTSCCCC
T ss_pred CCceEEEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhhcCCCCC
Confidence 68899999999999999989999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcEEEeeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccH
Q 013441 288 PYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDS 367 (443)
Q Consensus 288 P~f~Hlplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~ 367 (443)
|.|+|+|+|+|.+|+|||||+|+.+|++|+++||+|+||+|||++|||+++++.|++|++|+++.|+++++++++++||+
T Consensus 242 P~~~h~plil~~~g~KLSKR~g~~~l~~~r~~G~~peAl~~~l~~lG~s~~~~~e~~s~~eli~~f~~~~~~~~~a~fd~ 321 (498)
T 2ja2_A 242 PKFAHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMVAAFDVADVNSSPARFDQ 321 (498)
T ss_dssp CEEEEECCEECSSSSBCCTTSGGGBHHHHHHHTCCHHHHHHHHHTSSCCSCSSCCCCCHHHHHHHCCGGGCCCSCEECCH
T ss_pred CeEEEeeeeECCCCCcccccCCcccHHHHHhCCCCHHHHHHHHHHhCCCCCcccccCCHHHHHhhCChhhcCccccccCH
Confidence 99999999999999999999999999999999999999999999999998877899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhccccccchhhhcccccc
Q 013441 368 TKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLS 434 (443)
Q Consensus 368 ~kL~~~n~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 434 (443)
+||.|||++||++++.+++++++.|++++.|+....+.+++.+++.++|+|++++.|+++.+.|||.
T Consensus 322 ~kL~~~N~~~i~~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~r~~~l~e~~~~~~~~f~ 388 (498)
T 2ja2_A 322 KKADALNAEHIRMLDVGDFTVRLRDHLDTHGHHIALDEAAFAAAAELVQTRIVVLGDAWELLKFFND 388 (498)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHTTSCSSTTHHHHHHGGGST
T ss_pred HHHHHhhHHHHHhcCHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcC
Confidence 9999999999999999999999999999988632334579999999999999999999999999993
No 3
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=1.7e-111 Score=886.57 Aligned_cols=376 Identities=40% Similarity=0.730 Sum_probs=361.9
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
+|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|++||+||||+||++|++||+||||
T Consensus 1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 013441 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (443)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 214 (443)
+||+|+++|++++++|+++|+||+||||++||+++|+.+. .|+|+||+++.+|..+++.+|.+++||||+|.++
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~------~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~ 154 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG------GYDGRARNIPPEEAEERARRGEPHVIRLKVPRPG 154 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHS------SCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSC
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcC------CCCCcccCCCHHHHHHHHhcCCCceEEEecCCCC
Confidence 9999999999999999999999999999999999887642 7999999999999999899999999999999888
Q ss_pred ceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEee
Q 013441 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (443)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlp 294 (443)
.+.|+|+++|++++++..++||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|+|
T Consensus 155 ~~~~~D~~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~ 234 (468)
T 1j09_A 155 TTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMP 234 (468)
T ss_dssp EEEEEETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEEC
T ss_pred ceEEEeccceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEee
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHH
Q 013441 295 LILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMN 374 (443)
Q Consensus 295 lil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n 374 (443)
+|+|.+|+|||||+|+.+|++|+++||+|+||+|||++|||++++..|+++++++++.|+++++++++++||++||.|+|
T Consensus 235 li~~~~g~klSKR~g~~~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~el~~~f~~~~~~~~~~~~d~~kl~~~N 314 (468)
T 1j09_A 235 LLRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRWMN 314 (468)
T ss_dssp CCBCTTSCBCCTTTSCCBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHHHHCCGGGCCCSCCBCCHHHHHHHH
T ss_pred eeeCCCCCccccccchhhHHHHHHCCCCHHHHHHHHHHhccCCcccccCCCHHHHHhhCChhhcCccccccChHHhhhhc
Confidence 99999999999999999999999999999999999999999987777999999999999999999999999999999999
Q ss_pred HHHHhc-CChhHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhccccccchhhhccccccCcc
Q 013441 375 GQHLRA-IPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPL 437 (443)
Q Consensus 375 ~~~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 437 (443)
++||+. ++.+++.+++.|++.+.|+ ...+.+++.+++.++|+|++++.|+++...|||..|+
T Consensus 315 ~~~i~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~l~e~~~~~~~~f~~~~ 377 (468)
T 1j09_A 315 GKYIREVLSLEEVAERVKPFLREAGL-SWESEAYLRRAVELMRPRFDTLKEFPEKARYLFTEDY 377 (468)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTTC-CCSCHHHHHHHHHHHGGGCSSTTHHHHHSGGGTCSCC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCC-CcccHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCC
Confidence 999999 9999999999999999886 2234579999999999999999999999999998654
No 4
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=2.7e-112 Score=893.55 Aligned_cols=381 Identities=40% Similarity=0.723 Sum_probs=337.1
Q ss_pred ccCCCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCC
Q 013441 47 TNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPG 126 (443)
Q Consensus 47 ~~~~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~ 126 (443)
..+.+..++|||||||||||+|||||+||||+||++||++||+|||||||||++|+++++++.|++||+||||+||++
T Consensus 17 ~~p~~~~~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~-- 94 (490)
T 4g6z_A 17 QGPGSMTRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEG-- 94 (490)
T ss_dssp -------CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEE--
T ss_pred ccccccCCCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCC--
Confidence 334455668999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceE
Q 013441 127 VGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTY 206 (443)
Q Consensus 127 ~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~i 206 (443)
||+||+|+++|++++++|+++|+||+||||++||+++|+.+...|.+|.|+|+||++++++. +...+|.++++
T Consensus 95 ------~~~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-~~~~~g~~~~~ 167 (490)
T 4g6z_A 95 ------PYYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVL-PEPPAGVAPVL 167 (490)
T ss_dssp ------EEEGGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCC-CCCCTTCCCEE
T ss_pred ------CcccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhh-hhhhcCCCceE
Confidence 79999999999999999999999999999999999999888777888999999999985432 22356899999
Q ss_pred EEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCC
Q 013441 207 RFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFS 286 (443)
Q Consensus 207 R~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~ 286 (443)
|||+|.++.+.|+|+++|++++++..++||||+|+||+|||||||||||++|||||||||+||++|||+|++||+||||+
T Consensus 168 R~k~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG~~ 247 (490)
T 4g6z_A 168 RFRNPLTGTVAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGE 247 (490)
T ss_dssp EECCCCSSEEEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTTCC
T ss_pred EEecCCCCcEEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcCCC
Confidence 99999888999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCcccc
Q 013441 287 MPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFD 366 (443)
Q Consensus 287 ~P~f~Hlplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd 366 (443)
+|.|+|+|+|++.+|+|||||+|+++|.+||++||+|+||+|||++|||+++ +.|+||++||++.|+++++++++++||
T Consensus 248 ~P~f~HlpLi~~~~g~KLSKR~g~~sl~~~r~~G~~peal~n~l~~lG~s~~-~~e~~s~~eli~~F~~~~~~~~~~~fd 326 (490)
T 4g6z_A 248 VPVYAHLPTVLNEQGEKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHG-DAEIFTREQFVEWFDLEHLGKSPAQYD 326 (490)
T ss_dssp CCEEEEECCEECTTSSBCCTTTTCCBHHHHHHTTCCHHHHHHHHHTSSBCCT-TCCCCCHHHHHHHCCGGGBCSSCEECC
T ss_pred CCeEEEecceeCCCCCcccCCCCCcCHHHHHHCCCCHHHHHHHHHHhCCCCC-CccccCHHHHHhhCCHhhCCCCCCccC
Confidence 9999999999999999999999999999999999999999999999999975 578999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHcCCCCC--CCchHHHHHHHHHhhccccccchhhhccccccCcc
Q 013441 367 STKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTE--SKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPL 437 (443)
Q Consensus 367 ~~kL~~~n~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 437 (443)
++||.|||++||++++.++|++++.|++++.|+... .+.+++.+++.++|+|++++.|+++...|||..|.
T Consensus 327 ~~KL~~~N~~~i~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~e~~~~~~~~f~~~~ 399 (490)
T 4g6z_A 327 HNKLNWLNNHYIKEADDARLAGLAKPFFAALGIDAGAIEQGPDLVSVMGLMKDRASTVKEIAENSAMFYRAPA 399 (490)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTCCHHHHHHSSCHHHHHHHHCTTCSSHHHHHHHHGGGTSCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCccccccHHHHHHHHHHHHHhcCcHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999887421 22458999999999999999999999999998764
No 5
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=5.4e-108 Score=864.68 Aligned_cols=375 Identities=45% Similarity=0.774 Sum_probs=358.9
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
+|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|++||+||||+||++ ||
T Consensus 1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~--------~~ 72 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEG--------PY 72 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEE--------EE
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCC--------Cc
Confidence 3899999999999999999999999999999999999999999999999999999999999999999996 79
Q ss_pred eccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 013441 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (443)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 214 (443)
+||+|+++|++++++|+++|+||+||||++||+++|+.+...|.+|.|+|+||+++.+|..+++.+|.++++||++|.++
T Consensus 73 ~QS~r~~~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 152 (492)
T 2cfo_A 73 FQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDR 152 (492)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTC
T ss_pred cccCCHHHHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCC
Confidence 99999999999999999999999999999999999998888888899999999999999988889999999999999878
Q ss_pred ceeeeecccceeeecCCCC-CCeEEEecC-----CccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCC
Q 013441 215 SLKISDLIRGEVSWNLDTL-GDFVIMRSN-----GQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMP 288 (443)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~-~D~VL~RsD-----G~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P 288 (443)
.+.|+|+++|.+++++..+ +||||+|+| |+||||||||||||+|||||||||+||++|||+|++||++|||++|
T Consensus 153 ~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P 232 (492)
T 2cfo_A 153 QIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPP 232 (492)
T ss_dssp EEEEEETTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCC
T ss_pred ceEEEecceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCc
Confidence 9999999999999998888 999999999 9999999999999999999999999999999999999999999999
Q ss_pred cEEEeeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCC-CCCCcccCHHHHHhccccccccCCCccccH
Q 013441 289 YFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGD-GTENEFFTLKQLVEKFTIERVNKSGAIFDS 367 (443)
Q Consensus 289 ~f~Hlplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~-~~~~e~~s~~eli~~F~l~~v~~~~~~fd~ 367 (443)
.|+|+|+|++.+|+|||||+|+++|.+|+++||+|+||+|||++|||++ ++..|++|++++++.|+++++++++++||+
T Consensus 233 ~~~H~plil~~~g~KLSKr~g~~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~~~e~i~~f~~~~i~~~~~~~d~ 312 (492)
T 2cfo_A 233 NFAHTPLILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKHFSFERINKAGARFDW 312 (492)
T ss_dssp EEEEECCEECSSSSBCCTTSSCCBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCCHHHHHHHCCSTTBCSSCEECCH
T ss_pred eEEEeeeEECCCCCEecccCCcccHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccCHHHHHhhcChhhcCccccccCH
Confidence 9999999999999999999999999999999999999999999999997 566799999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHcCCC-CC-CCchHHHHHHHHHhhccccccchhhhccccccCcc
Q 013441 368 TKLRWMNGQHLRAIPSNELTKLIGERWKSTGIL-TE-SKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPL 437 (443)
Q Consensus 368 ~kL~~~n~~~l~~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 437 (443)
+||.|||++||++++.+++++++.+++.+.|.+ .. .+.+++.+++.++|+|++++.|+++...|||..++
T Consensus 313 ~kl~~~N~~~i~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~l~~~~~~~~~r~~~l~e~~~~~~~~f~~~~ 384 (492)
T 2cfo_A 313 DKLNWLNRQYIQQLEPEEFLAELIPLWQGAGYAFDEERDRPWLFDLAQLLQPGLNTLREAIDQGAVFFIPSV 384 (492)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTCCCCTTTTHHHHHHHHHHHGGGCSSGGGHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcCcccccHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999998843 21 23479999999999999999999999999998653
No 6
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=3.2e-108 Score=865.21 Aligned_cols=365 Identities=47% Similarity=0.831 Sum_probs=346.1
Q ss_pred CceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 013441 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (443)
Q Consensus 54 ~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gp 133 (443)
++|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|++||+||||+||++|++||+|||
T Consensus 24 ~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp 103 (488)
T 3afh_A 24 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 103 (488)
T ss_dssp -CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 013441 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (443)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 213 (443)
|+||+|+++|++++++|+++|+||+||||++||+++ .+|.|+|+| +.+.+|.++++|||+| +
T Consensus 104 ~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~--------~~~~Y~~~~---------~~~~~G~~~~iR~k~~-~ 165 (488)
T 3afh_A 104 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKE--------LFTTYEYPH---------EYKEKGHPVTIKFKVL-P 165 (488)
T ss_dssp CBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSE--------EEEESSCCH---------HHHHTTCCEEEEECCC-S
T ss_pred eeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhh--------cCCCCCchh---------hHHhcCCCceEEEECC-C
Confidence 999999999999999999999999999999999754 246899872 3456799999999999 6
Q ss_pred CceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEe
Q 013441 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHV 293 (443)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hl 293 (443)
+.+.|+|+++|.+.+++..++|+||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|+
T Consensus 166 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~ 245 (488)
T 3afh_A 166 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHI 245 (488)
T ss_dssp SEEEEEETTTEEEEEEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEE
T ss_pred CceeEEeccceeEeecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEE
Confidence 88999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHH
Q 013441 294 SLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWM 373 (443)
Q Consensus 294 plil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~ 373 (443)
|+|+|.+|+|||||+|+++|++|+++||+|+||+|||++|||+++++ |++|++|+++.|+++++++++++||++||.|+
T Consensus 246 pli~~~~g~KLSKR~g~~~l~~~r~~G~~peal~n~l~~lG~s~~~~-e~~s~~e~i~~f~~~~i~~~~~~fd~~kl~~~ 324 (488)
T 3afh_A 246 PLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGD-EIFTIEEKLQSFDPKDISNKGVIFDYQKLEWV 324 (488)
T ss_dssp CCEECTTSSBCCTTTSCCBHHHHHHHTCCHHHHHHHHHHTTCCCSSC-SCCCHHHHGGGCCGGGSCSSCEECCHHHHHHH
T ss_pred eeeeCCCCCcccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCCccc-ccCCHHHHHhhCChhhcCccccccChHHhhhc
Confidence 99999999999999999999999999999999999999999998766 99999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHcCC-CCCCCchHHHHHHHHHhhccccccchhhhccccccCcc
Q 013441 374 NGQHLRAIPSNELTKLIGERWKSTGI-LTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPL 437 (443)
Q Consensus 374 n~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 437 (443)
|++||++++.+++++++.+++.+.|. +...+.+++.+++.++|+|++++.|+++...|||..++
T Consensus 325 N~~~i~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~l~~~~~~~~~r~~~l~el~~~~~~~f~~~~ 389 (488)
T 3afh_A 325 NGKHMRRIDLEDLKREFIEWAKYAGKEIPSVDERYFSETLRICREKVNTLSQLYDIMYPFMNDDY 389 (488)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHTTSCSSHHHHHHHHHHHHCSCC
T ss_pred cHHHHhcCCHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999884 33234579999999999999999999999999998653
No 7
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-104 Score=836.36 Aligned_cols=381 Identities=48% Similarity=0.832 Sum_probs=367.1
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
-||+||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|+++|+|||++||++|..||+||||
T Consensus 13 vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y 92 (481)
T 2o5r_A 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPY 92 (481)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred EEEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCce
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCc--CCCCCHHHHHHHHhcCCCceEEEecCC
Q 013441 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGK--WATATDAEVQKELERGTPYTYRFRVPK 212 (443)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~--cr~ls~~e~~~~~~~g~~~~iR~k~~~ 212 (443)
+||+|+++|++++++|+++|+||+||||+++|+++|+.+...|.+|.|+|. ||+++.+|..+++.+|.+++|||++|.
T Consensus 93 ~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR~k~~~ 172 (481)
T 2o5r_A 93 RQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVFFKMPR 172 (481)
T ss_dssp BGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEEECCCS
T ss_pred eeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEEEEcCC
Confidence 999999999999999999999999999999999999988888888999999 999999999988899999999999987
Q ss_pred CCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 013441 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAH 292 (443)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~H 292 (443)
+.+.|+|+++|.+.+++..++|+||+|+||+||||||||||||+|+|||||||+||++|||+|+++|++|||++|.|+|
T Consensus 173 -~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG~~~p~~~H 251 (481)
T 2o5r_A 173 -KDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAH 251 (481)
T ss_dssp -SCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred -CceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcCCCCCeEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHH
Q 013441 293 VSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRW 372 (443)
Q Consensus 293 lplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~ 372 (443)
+|++++.+|+|||||+|+++|++|+++||+|+||+||+++|||+++.+.|+++++++++.|+++++++++++||++||.|
T Consensus 252 ~plil~~~G~KLSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~~~~~e~~~~~e~i~~f~l~~~~~~~~~fd~~kl~~ 331 (481)
T 2o5r_A 252 VSTILGPDGKKLSKRHGATSVEAFRDMGYLPEALVNYLALLGWSHPEGKELLTLEELISSFSLDRLSPNPAIFDPQKLKW 331 (481)
T ss_dssp ECCEECTTSSBCCGGGSCCBHHHHHHHTCCHHHHHHHHHTSSBCCTTCCCCCCHHHHHHHCCGGGBCSSCEECCHHHHHH
T ss_pred EeeEECCCCCcccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCCCcccccCCHHHHHHhCChhhCCccCcccChHHhhh
Confidence 99999999999999999999999999999999999999999999866678999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhccccccchhhhccccccCcc
Q 013441 373 MNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPL 437 (443)
Q Consensus 373 ~n~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 437 (443)
+|++||++++.+++++++.+++.+.|+. ..+.+++.+++.++|+|++++.|+++.+.|||..|+
T Consensus 332 ~n~~~i~~~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~f~~~~ 395 (481)
T 2o5r_A 332 MNGYYLRNMPIEKLAELAKPFFEKAGIK-IIDEEYFKKVLEITKERVEVLSEFPEESRFFFEDPA 395 (481)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHHHTTTCSSGGGHHHHSGGGTSCCC
T ss_pred hCHHHHHhcCHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHhccCCcHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999998852 234579999999999999999999999999998754
No 8
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-103 Score=845.39 Aligned_cols=365 Identities=47% Similarity=0.831 Sum_probs=346.5
Q ss_pred CceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 013441 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (443)
Q Consensus 54 ~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gp 133 (443)
.+|||||||||||+|||||+||||+||++||++||+|||||||||++|+++++++.|++||+||||+||++|++||+|||
T Consensus 128 ~~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 013441 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (443)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 213 (443)
|+||+|+++|++++++|+++|+||+||||++||+++ .+|.|+|+| +.+.+|.++++|||+| +
T Consensus 208 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~--------~~~~Y~~~~---------~~~~~g~~~~iR~k~~-~ 269 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKE--------LFTTYEYPH---------EYKEKGHPVTIKFKVL-P 269 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEE--------CCCCSSCCH---------HHHHTTCCEEEEECCC-S
T ss_pred eeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhh--------cCCCCCcHH---------HHhhcCCCceEEEECC-C
Confidence 999999999999999999999999999999999754 357899872 3456799999999999 6
Q ss_pred CceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEe
Q 013441 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHV 293 (443)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hl 293 (443)
+.+.|+|+++|.+.+++..++|+||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|+
T Consensus 270 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~hl 349 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHI 349 (592)
T ss_dssp SCCEECCTTTCSEECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEE
T ss_pred CCceeeecccceeeeccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEe
Confidence 88999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHH
Q 013441 294 SLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWM 373 (443)
Q Consensus 294 plil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~ 373 (443)
|+|+|.+|+|||||+|+++|++|+++||+|+||+|||++|||+++++ |++|++++++.|+++++++++++||++||.|+
T Consensus 350 pli~~~~g~KLSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~~~~-e~~s~~e~i~~f~~~~i~~~~~~fd~~kl~~~ 428 (592)
T 3al0_C 350 PLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGD-EIFTIEEKLQSFDPKDISNKGVIFDYQKLEWV 428 (592)
T ss_dssp CCCBCTTSSBCCTTTCSSBHHHHHHTTCCHHHHHHHHTTTTBCCCSC-SCCCTTTTGGGCCTTSBCSSCCBCCHHHHHHH
T ss_pred eeeeCCCCCcccccCCcccHHHHHHCCCCHHHHHHHHHHhCCCCccc-ccCCHHHHHhhCChhhcCcccceeCHHHHhhh
Confidence 99999999999999999999999999999999999999999998766 89999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHcCC-CCCCCchHHHHHHHHHhhccccccchhhhccccccCcc
Q 013441 374 NGQHLRAIPSNELTKLIGERWKSTGI-LTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPL 437 (443)
Q Consensus 374 n~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 437 (443)
|++||++++.++|++++.+++++.|. +...+.+++.+++.++|+|++++.|+++...|||..++
T Consensus 429 N~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~l~el~~~~~~~f~~~~ 493 (592)
T 3al0_C 429 NGKHMRRIDLEDLKREFIEWAKYAGKEIPSVDERYFSETLRICREKVNTLSQLYDIMYPFMNDDY 493 (592)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTCCCCCCCTTTHHHHHHHHHTTCSSSSHHHHTTGGGTCSCC
T ss_pred hHHHhhcCCHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999884 32234578999999999999999999999999998653
No 9
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=5.5e-86 Score=658.04 Aligned_cols=282 Identities=29% Similarity=0.513 Sum_probs=248.9
Q ss_pred CCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 013441 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (443)
Q Consensus 53 ~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~g 132 (443)
.++|||||||||||+|||||+||||+||++||++||+|+|||||||++|++++++++|++||+||||+||++
T Consensus 3 ~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~-------- 74 (298)
T 1nzj_A 3 DTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGD-------- 74 (298)
T ss_dssp -CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSC--------
T ss_pred CCCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCC--------
Confidence 347999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 013441 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (443)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~ 212 (443)
||+||+|++.|++++++|+++|+||+|+||++||++. + .+|+|+|++++.+ |.++++|||+|.
T Consensus 75 ~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~-------~--~~Y~g~cr~~~~~--------g~~~~~R~r~~~ 137 (298)
T 1nzj_A 75 VLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSI-------G--GIYDGHCRVLHHG--------PDNAAVRIRQQH 137 (298)
T ss_dssp CEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHT-------T--SSCCCTTTTTCCC--------STTCEEEECCSS
T ss_pred CeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHc-------C--CCCCCccccCCcC--------CCCCcEEEecCC
Confidence 6999999999999999999999999999999999653 2 2799999998753 678899999985
Q ss_pred CCceeeeecccceeeecC-CCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEE
Q 013441 213 GGSLKISDLIRGEVSWNL-DTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFA 291 (443)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~-~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~ 291 (443)
+.+.|+|+++|.+.++. .+++||||+|+||+|||||||||||++|||||||||+||++|||+|++||++|||+.|.|+
T Consensus 138 -~~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~ 216 (298)
T 1nzj_A 138 -PVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYI 216 (298)
T ss_dssp -CCCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEE
T ss_pred -cccceehhhCcccccCcccCCCCEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEE
Confidence 67899999999998876 3789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHH----HHHhccccccccCCCcc
Q 013441 292 HVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLK----QLVEKFTIERVNKSGAI 364 (443)
Q Consensus 292 Hlplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~----eli~~F~l~~v~~~~~~ 364 (443)
|+|+|++.+|+|||||+|+.+|++++. ..++.|||++|||+++.+.|++|++ |+|+.|+++++++++.+
T Consensus 217 H~pll~~~~g~KLSKR~g~~~v~~~~~----~~~~~~~l~~lG~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~~~ 289 (298)
T 1nzj_A 217 HLPLALNPQGAKLSKQNHAPALPKGDP----RPVLIAALQFLGQQAEAHWQDFSVEQILQSAVKNWRLTAVPESAIV 289 (298)
T ss_dssp EECBCCC-------------CCCSSCC----HHHHHHHHHHTTCCCCSCGGGSCHHHHHHHHHHTCCGGGSCCCSBC
T ss_pred EeeeeECCCCCcccccCCccChhcCCc----cHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHhCCHhhCCCCCCc
Confidence 999999999999999999999987754 4579999999999988777899977 57999999999998853
No 10
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=8.5e-81 Score=660.36 Aligned_cols=323 Identities=21% Similarity=0.312 Sum_probs=282.5
Q ss_pred cceeeeecccccCCCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHH
Q 013441 37 RRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSW 116 (443)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~w 116 (443)
.+|...++..+.++...++|||||||||||+||||||||||+||++||++||+|||||||||++|++++++++|++||+|
T Consensus 8 ~~fi~~~i~~dl~~~~~~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~w 87 (553)
T 1qtq_A 8 TNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEW 87 (553)
T ss_dssp CCHHHHHHHHHHHHTSCSSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHH
Confidence 47777777777665556789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH-
Q 013441 117 LGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ- 195 (443)
Q Consensus 117 LGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~- 195 (443)
|||+||++ ||+||+|++.|+++|++|+++|+||+||||++||++.|+.+ ..+.|++.||+++.+|..
T Consensus 88 LGl~wde~--------~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~----~~~g~~~~~R~~s~ee~~~ 155 (553)
T 1qtq_A 88 LGFHWSGN--------VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTL----TQPGKNSPYRDRSVEENLA 155 (553)
T ss_dssp TTCCCSSS--------CEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCS----SSCCCCCTTTTCCHHHHHH
T ss_pred cCCCCCCC--------CeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhccc----ccCCCCCccccCchhhhHh
Confidence 99999986 79999999999999999999999999999999998876321 245788889999998755
Q ss_pred --HHHhcCC----CceEEEecCCCCceeeeecccceeeecCCCCCCeEEEe---------cC---Cccccchhhhhhccc
Q 013441 196 --KELERGT----PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMR---------SN---GQPVYNFCVTVDDAT 257 (443)
Q Consensus 196 --~~~~~g~----~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~R---------sD---G~PtY~fA~vVDD~~ 257 (443)
+.|.+|. ++++|+|++. ..++..++||||+| +| |+||||||||||||+
T Consensus 156 ~fe~m~~G~~~~g~~~lR~kid~--------------~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~ 221 (553)
T 1qtq_A 156 LFEKMRAGGFEEGKACLRAKIDM--------------ASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDAL 221 (553)
T ss_dssp HHHHHHTTCSCTTSCEEEECSCT--------------TCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHH
T ss_pred HHHHHhCCCccCCceEEEEeccc--------------ccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEecc
Confidence 4677776 7899998763 22345678999999 67 599999999999999
Q ss_pred CCcceEEecCCCCCCHHHHHHHHHHcCCC-CCcEEEeeceecCCCceecccCC----------------CCChHHHHHCC
Q 013441 258 MAISHVIRAEEHLPNTLRQALIYKALGFS-MPYFAHVSLILAPDRSKLSKRHG----------------ATSVGQFREMG 320 (443)
Q Consensus 258 m~ITHVIRG~D~l~ntp~q~~ly~aLg~~-~P~f~Hlplil~~dg~KLSKR~g----------------~~si~~~r~~G 320 (443)
|||||||||+||++|||+|.+||+||||+ .|.++|+.. ++.+|+|||||+| ..+|.+||++|
T Consensus 222 ~GITHviRg~e~~~n~~~q~~l~~alg~~~~P~~~~f~h-Ln~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rG 300 (553)
T 1qtq_A 222 EGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSR-LNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRG 300 (553)
T ss_dssp TTCSEEEEEGGGTTTHHHHHHHHHTSCCSCCCEEEEECC-CCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHT
T ss_pred CCcceEeeccchhhhHHHHHHHHHHcCCCCCCCeEEEEe-ecCCCccccccccccccccCcccCCCCcchhhHHHHHHCC
Confidence 99999999999999999999999999999 697667766 3779999999996 35899999999
Q ss_pred CCHHHHHHHHHHhCCCCCCC-CcccCHHHHHhccccccc-cCCCccccHHHHHHHH--H--HHH---hcCChhHHH
Q 013441 321 YLPQAMVNYLALLGWGDGTE-NEFFTLKQLVEKFTIERV-NKSGAIFDSTKLRWMN--G--QHL---RAIPSNELT 387 (443)
Q Consensus 321 ~~peai~n~l~~LG~~~~~~-~e~~s~~eli~~F~l~~v-~~~~~~fd~~kL~~~n--~--~~l---~~~~~~~l~ 387 (443)
|+|+||+|||+++||+..+. .|+++++++++ |+++++ ++++++||+.||.|+| + +|+ +..+.+++.
T Consensus 301 y~PeAirnfl~~lG~s~~~~~~e~~~le~~~~-~~l~~~~~r~~av~d~~Kl~~~N~~~~~~~~~~p~~p~~~~~g 375 (553)
T 1qtq_A 301 YTAASIREFCKRIGVTKQDNTIEMASLESCIR-EDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMG 375 (553)
T ss_dssp CCHHHHHHHHHHHCCCSSCCCBCHHHHHHHHH-HHHHHHSCEECEESSEEEEEBTTCCSSCEEEEEESCSSCGGGC
T ss_pred CCHHHHHHHHHHcCCCCCccccchhhHHHHHH-hCcccccccccceeccceEEEEcCCCceEEEEecCCCCChHHh
Confidence 99999999999999998765 48999999887 999995 5899999999999999 4 577 455555443
No 11
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=5.5e-77 Score=654.55 Aligned_cols=311 Identities=24% Similarity=0.353 Sum_probs=271.0
Q ss_pred cceeeeecccccCCCCCCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHH
Q 013441 37 RRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSW 116 (443)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~w 116 (443)
.+|...++..+......++|||||||||||+||||||||||+||++||++||+|||||||||++|++++|+++|++||+|
T Consensus 48 ~~fi~~ii~~dl~~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~w 127 (851)
T 2hz7_A 48 PNFITEIIERDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKW 127 (851)
T ss_dssp CCHHHHHHHHHHHTTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHH
Confidence 47888888777665556689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH-
Q 013441 117 LGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ- 195 (443)
Q Consensus 117 LGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~- 195 (443)
|||+||++ ||+||+|+++|++++++|+++|+||+||||+++|++.|..+ ..+.|++.||+++.+|..
T Consensus 128 LGl~wde~--------~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~----~~~G~~s~~R~ls~ee~l~ 195 (851)
T 2hz7_A 128 LGLDWGEH--------FYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNA----TTPGTPSPYRDRSVEENLD 195 (851)
T ss_dssp HTCCCTTC--------EEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBT----TBCCCCCTTTTCCHHHHHH
T ss_pred cCCCCCCC--------cccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcch----hccCCCcccccCCHHHHhh
Confidence 99999986 79999999999999999999999999999999998876321 224677789999988754
Q ss_pred --HHHhcCC----CceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecC------------Cccccchhhhhhccc
Q 013441 196 --KELERGT----PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSN------------GQPVYNFCVTVDDAT 257 (443)
Q Consensus 196 --~~~~~g~----~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsD------------G~PtY~fA~vVDD~~ 257 (443)
+.|.+|. ++++|+|++. ...+..++||||+|++ |+||||||||||||+
T Consensus 196 ~fe~m~~G~~~~g~~vlR~Kid~--------------~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~ 261 (851)
T 2hz7_A 196 LLRRMKAGEFADGEHVLRAKIDL--------------TAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAI 261 (851)
T ss_dssp HHHHHHTTCSCTTSCEEEECCCT--------------TCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHH
T ss_pred HHHHHhcCCcccCCeeEEEeccc--------------cccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeecc
Confidence 5677776 8999999863 1234467899999987 799999999999999
Q ss_pred CCcceEEecCCCCCCHHHHHHHHHHcCCCC-CcEEEeeceecCCCceecccCCC----------------CChHHHHHCC
Q 013441 258 MAISHVIRAEEHLPNTLRQALIYKALGFSM-PYFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMG 320 (443)
Q Consensus 258 m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~-P~f~Hlplil~~dg~KLSKR~g~----------------~si~~~r~~G 320 (443)
|||||||||+||++|||+|.+||++|||+. |.++|+.. ++.+|+|||||+++ .+|.+||++|
T Consensus 262 ~GITHViRG~D~~~n~~~q~~l~~alG~~~~P~~~~fah-Ln~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rG 340 (851)
T 2hz7_A 262 EGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGR-RGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLG 340 (851)
T ss_dssp HTCSEEEEEGGGTTTHHHHHHHHHHTTCSSCCEEEEECC-EEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHT
T ss_pred CCcceeecchhhhhChHHHHHHHHHcCCCCCCCceEEEE-ecCCCccccccccccccccCcccCCCCcchhHHHHHHHcC
Confidence 999999999999999999999999999996 86444444 24489999999953 5799999999
Q ss_pred CCHHHHHHHHHHhCCCCCCC-CcccCHHHHHhccccccc-cCCCccccHHHHHHHHH
Q 013441 321 YLPQAMVNYLALLGWGDGTE-NEFFTLKQLVEKFTIERV-NKSGAIFDSTKLRWMNG 375 (443)
Q Consensus 321 ~~peai~n~l~~LG~~~~~~-~e~~s~~eli~~F~l~~v-~~~~~~fd~~kL~~~n~ 375 (443)
|+|+||+|||+++||+..+. .++++++.++ .|+++++ ++++++||+.||.|+|.
T Consensus 341 y~PeAIr~fl~~lG~s~~~~~~e~~~le~~~-r~~l~~~~~r~~av~d~~Kl~~~N~ 396 (851)
T 2hz7_A 341 VTPEAVRAFAAQIGVSRTNRTVDIAVYENAV-RDDLNHRAPRVMAVLDPVKVTLTNL 396 (851)
T ss_dssp CCHHHHHHHHHHSCCCSSCEEECHHHHHHHH-HHHHHTTCCEECEESSEEEEEETTC
T ss_pred CCHHHHHHHHHhcCCCCCcccccHHHHHHHH-HhcccccccccceEecceeEEEecC
Confidence 99999999999999997654 4677777554 5899995 67999999999999985
No 12
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.4e-74 Score=612.81 Aligned_cols=273 Identities=32% Similarity=0.532 Sum_probs=231.1
Q ss_pred CCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 013441 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (443)
Q Consensus 53 ~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~g 132 (443)
+++|||||||||||+||||||||||+||++||++||+|+|||||||++|++++|+++|++||+||||+||+
T Consensus 94 ~g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~--------- 164 (553)
T 3aii_A 94 KGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDE--------- 164 (553)
T ss_dssp CSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSE---------
T ss_pred CCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCC---------
Confidence 57899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH---HHhcCCC--ceEE
Q 013441 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK---ELERGTP--YTYR 207 (443)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~---~~~~g~~--~~iR 207 (443)
+|+||+|++.|++++++|+++|+||+||||++++++.|.. .+.++||+++.+|..+ .|.+|.+ +++|
T Consensus 165 ~~~qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~--------g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR 236 (553)
T 3aii_A 165 TVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNR--------GEACHCRSLGFRENLQRWREMFEMKEGSAVVR 236 (553)
T ss_dssp EEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHT--------TCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEE
T ss_pred CcccccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhc--------CCCCccccCCHHHHHHHHHHHhcCCcCceEEE
Confidence 5899999999999999999999999999999999877642 3678999999987543 4667754 8999
Q ss_pred EecCCCCceeeeecccceeeecCCCCCCeEEEec---------C---CccccchhhhhhcccCCcceEEecCCCCCCHHH
Q 013441 208 FRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS---------N---GQPVYNFCVTVDDATMAISHVIRAEEHLPNTLR 275 (443)
Q Consensus 208 ~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs---------D---G~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~ 275 (443)
++++. ..++..++||||+|. | |+|||||||+||||+|||||||||.||++|||+
T Consensus 237 ~k~d~--------------~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~ 302 (553)
T 3aii_A 237 VKTDL--------------NHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREK 302 (553)
T ss_dssp ECCCT--------------TCSSGGGTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHH
T ss_pred EEccc--------------ccCCCCCCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHH
Confidence 98753 122346789999997 4 699999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcEEEeeceecCCCceecccCC----------------CCChHHHHHCCCCHHHHHHHHHHhCCCCCC
Q 013441 276 QALIYKALGFSMPYFAHVSLILAPDRSKLSKRHG----------------ATSVGQFREMGYLPQAMVNYLALLGWGDGT 339 (443)
Q Consensus 276 q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g----------------~~si~~~r~~G~~peai~n~l~~LG~~~~~ 339 (443)
|.+||++|||+.|.|+|+|+| +.+|+|||||+| ..+|.+||++||+|+||+|||+.+||+...
T Consensus 303 Q~~l~~alG~~~P~y~H~~~L-~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~ 381 (553)
T 3aii_A 303 QEYLYRHLGWEPPEFIHYGRL-KMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIAD 381 (553)
T ss_dssp HHHHHHHHTCCCCEEECCCCB-C-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHcCCCCCeEEEeeEE-ecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCcc
Confidence 999999999999999999996 679999999987 357999999999999999999999996532
Q ss_pred CCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhc
Q 013441 340 ENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRA 380 (443)
Q Consensus 340 ~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~ 380 (443)
..|++++|...|+++|..
T Consensus 382 -----------------------~~~s~~~L~~~~r~~l~~ 399 (553)
T 3aii_A 382 -----------------------STMSWKKIYGLNRSILEE 399 (553)
T ss_dssp -----------------------BCCCHHHHHHHHHHHHTT
T ss_pred -----------------------ccccHHHHHHHHHHHhhc
Confidence 236666677777777654
No 13
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=4.1e-46 Score=396.62 Aligned_cols=342 Identities=15% Similarity=0.169 Sum_probs=241.3
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHH-----HHcCCeEEEEecCCCcccCc--------------------------
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFA-----RSKGGKFVLRIEDTDLERST-------------------------- 103 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~A-----r~~gG~fiLRIEDTD~~R~~-------------------------- 103 (443)
.+++.-||||||++||||+||||+|+++| ++++|+|++||||||+.|.+
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 45555599999999999999999997775 56899999999999966655
Q ss_pred ----HHHHHHHHHHHHHcCCCCCCCCCCCCCCCceeccc-cHH-HHHHHHHHHHHcC-CeeeecCCHHHHHHHHHHHHhC
Q 013441 104 ----KESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSE-RNS-LYKQYADKLLESG-HVYRCFCSNEELEKMKEIAKLK 176 (443)
Q Consensus 104 ----~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~QSe-r~~-~Y~~~a~~Li~~G-~AY~Cfcs~eel~~~r~~~~~~ 176 (443)
+.+++.|+++|+||||+||. |+||+ |.+ .|++++++|+++| ++|.|++....+.+. .+-..
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D~----------~~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~--~~y~~ 168 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVDL----------LYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQ--PPLPE 168 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEE----------EEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTC--CCCCT
T ss_pred HHHHHHHHHHHHHHHHHcCCCceE----------EechhhccchHHHHHHHHHHHchHHHHHHHHhhcccccc--ccccC
Confidence 34999999999999999985 79999 998 9999999999999 888876321110000 00000
Q ss_pred CCCC--CCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceeeeecccce--eeecCCCCCCeEEEecCCccccchhhh
Q 013441 177 QLPP--VYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGE--VSWNLDTLGDFVIMRSNGQPVYNFCVT 252 (443)
Q Consensus 177 ~~~~--~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~--i~~~~~~~~D~VL~RsDG~PtY~fA~v 252 (443)
+..+ .|++.|+.++.+ ++ ..+. .++||++. .+.+.|.|.++|. ..+.. |+ |+|+|+|+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~-~~---~~~~-~~~~f~~~-~g~~~~~d~~~G~g~~~w~~----d~------~~~~~~l~~~ 232 (523)
T 1irx_A 169 NWWPAMVYCPEHRREAEI-IE---WDGG-WKVKYKCP-EGHEGWVDIRSGNVKLRWRV----DW------PMRWSHFGVD 232 (523)
T ss_dssp TCCSEEEECTTTCCEECE-EE---ECSS-SCEEECCS-SSCCCEECTTSSCEEECHHH----HH------HHHHHHSCCC
T ss_pred CceeccccchhhCCcccc-cc---cCCC-Cceeeeec-CCCccccCCcCCCCCCCCCc----ch------HhhHHHcCCC
Confidence 1122 466778765422 10 1122 46899984 4778899988544 44432 22 7899999999
Q ss_pred hhcccCCcceEEecCCCCCCHHHHHHHH-HHcCCCCCcEEEeeceecC-CCceecccCCCC-ChHHHHHCCCCHHHHHHH
Q 013441 253 VDDATMAISHVIRAEEHLPNTLRQALIY-KALGFSMPYFAHVSLILAP-DRSKLSKRHGAT-SVGQFREMGYLPQAMVNY 329 (443)
Q Consensus 253 VDD~~m~ITHVIRG~D~l~ntp~q~~ly-~aLg~~~P~f~Hlplil~~-dg~KLSKR~g~~-si~~~r~~G~~peai~n~ 329 (443)
|| .||++|+.+|. |++.+..++ ++||+++|.|.|+++|++. +|+|||||+|++ ++.++++. |.|+|+++|
T Consensus 233 vd--~~G~Dh~~~h~----s~~~~~~i~~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~-~~pdalR~~ 305 (523)
T 1irx_A 233 FE--PAGKDHLVAGS----SYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLVRFI 305 (523)
T ss_dssp BC--CEEHHHHSTTS----HHHHHHHHHHHHHCCCCCBCCEECCEEESCC---------CCCCHHHHHTT-SCHHHHHHH
T ss_pred Cc--CCCcCccCCCc----chhhHHHHHHHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHH-cCHHHHHHH
Confidence 98 77888887761 333333333 7999999999999999998 799999999986 99999999 999999999
Q ss_pred HHHhCCCCCCCCcccCHH-HHHhcc-ccccccCCCccccHH--HHHHHHHHH-HhcC-ChhHHHHHHHHHH--HHcCCCC
Q 013441 330 LALLGWGDGTENEFFTLK-QLVEKF-TIERVNKSGAIFDST--KLRWMNGQH-LRAI-PSNELTKLIGERW--KSTGILT 401 (443)
Q Consensus 330 l~~LG~~~~~~~e~~s~~-eli~~F-~l~~v~~~~~~fd~~--kL~~~n~~~-l~~~-~~~~l~~~~~~~~--~~~~~~~ 401 (443)
|+++||.. +..|+.+ ++.+.+ .++++.++...++.. ||.|+|++| |+++ +.+++. ...|++ ...+.+.
T Consensus 306 l~~~~~~~---~~~fs~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~n~~~~i~~~~~~~~~~-~~~p~~~~~~~~~~~ 381 (523)
T 1irx_A 306 YARHRPNK---EIKIDLGLGILNLYDEFEKVERIYFGVEGGKGDDEELRRTYELSMPKKPERLV-AQAPFRFLAVLVQLP 381 (523)
T ss_dssp HHSSCTTS---CEEECCSTTHHHHHHHHHHHHHHHTTSCC-----CHHHHHHHHHCSSCCCCCC-CCCCHHHHHHHTTCT
T ss_pred HHhcCCCC---CceeCcchhHHHHHHHHHHHHHHHhcccccchhhhhhcceeEeeccCCCCCCC-CCCCHHHHHHHHhhc
Confidence 99888753 3345555 444444 335676666666665 699999999 9997 666643 566663 3333222
Q ss_pred CCCchHHHHHHHH--------HhhccccccchhhhccccccC
Q 013441 402 ESKGPFVDEAIQL--------LKDGIDLVPDSDKALSNLLSY 435 (443)
Q Consensus 402 ~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~ 435 (443)
..+.+++.+++.. +++|+++|.|+.+.+.+||..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 423 (523)
T 1irx_A 382 HLTEEDIINVLIKQGHIPRDLSKEDVERVKLRINLARNWVKK 423 (523)
T ss_dssp TCCHHHHHHHHHHTTSSCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 2345789999999 999999999999999998863
No 14
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.90 E-value=2.4e-23 Score=218.40 Aligned_cols=236 Identities=20% Similarity=0.261 Sum_probs=168.7
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc---cC----------cHHHHHHHHHHHHHcCCCC-
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE---RS----------TKESEEAVLQDLSWLGLDW- 121 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~~---R~----------~~~~~~~I~~dL~wLGl~w- 121 (443)
.|+|+|++||||+|++++...++|. ++..|+.+|+|+|.+ |. .+.+.+.+.++++|||+.+
T Consensus 29 gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~LgI~~~ 108 (461)
T 1li5_A 29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRP 108 (461)
T ss_dssp CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5666699999999999999888884 567999999999974 22 5688999999999999997
Q ss_pred CCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeee------cCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH
Q 013441 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRC------FCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ 195 (443)
Q Consensus 122 Degp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~C------fcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~ 195 (443)
|.. .++|++.+.+++++++|+++|+||.+ ||+.+. +.|...|.. +.++
T Consensus 109 d~~---------~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~--------------~~yg~lsg~-~~~~-- 162 (461)
T 1li5_A 109 DME---------PRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD--------------PTYGVLSRQ-DLDQ-- 162 (461)
T ss_dssp SBC---------CBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC--------------TTTTTTTTC-------
T ss_pred ccc---------ccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccc--------------cccccccCC-CHHH--
Confidence 542 47999999999999999999999996 776542 235444432 1222
Q ss_pred HHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec--C-----------Cccccchhhhh-hcccCCcc
Q 013441 196 KELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS--N-----------GQPVYNFCVTV-DDATMAIS 261 (443)
Q Consensus 196 ~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs--D-----------G~PtY~fA~vV-DD~~m~IT 261 (443)
+..|. |+. ++. ......||+++|+ + |.|.||++|++ .....+.+
T Consensus 163 --l~~g~----rv~--------~~~--------~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~ 220 (461)
T 1li5_A 163 --LQAGA----RVD--------VVD--------DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNH 220 (461)
T ss_dssp ----------------------------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSS
T ss_pred --hhcCC----ccc--------chh--------cccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCC
Confidence 22232 111 100 1123468888886 3 45777888865 34445789
Q ss_pred eEEe--cCC----CCCCHHHHHHHHHHcCCCCCc-EEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHh
Q 013441 262 HVIR--AEE----HLPNTLRQALIYKALGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 262 HVIR--G~D----~l~ntp~q~~ly~aLg~~~P~-f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~L 333 (443)
+.|+ |.| |..+.+.|... ++|++.|. +.|.++|.. +|+|||||.|+ ++++++.++ |.|++++.|+...
T Consensus 221 ~dih~gG~Dl~fpH~~~~~aq~~a--~~g~~~~~~~~h~g~v~~-~G~KMSKS~GN~v~~~dll~~-~g~dalR~~ll~~ 296 (461)
T 1li5_A 221 FDIHGGGSDLMFPHHENEIAQSTC--AHDGQYVNYWMHSGMVMV-DREKMSKSLGNFFTVRDVLKY-YDAETVRYFLMSG 296 (461)
T ss_dssp EEEEECBGGGTTTHHHHHHHHHHH--HSSSCCEEEECCBCCEEE-TTBCCCGGGTCCCBHHHHHTT-SCHHHHHHHHHSS
T ss_pred ceEEeccCccCchHHHHHHHHHHH--hcCCCCCcEEEEeeEEEE-CCeEccccCCCccChhHHhhh-CCHHHHHHHHHcC
Confidence 9999 999 45567766653 36887775 568788665 79999999998 699999887 9999999999852
Q ss_pred CCCCCCCCcccCHHHHHh
Q 013441 334 GWGDGTENEFFTLKQLVE 351 (443)
Q Consensus 334 G~~~~~~~e~~s~~eli~ 351 (443)
+...+-.||.+.+.+
T Consensus 297 ---~~~~~~~fs~~~l~~ 311 (461)
T 1li5_A 297 ---HYRSQLNYSEENLKQ 311 (461)
T ss_dssp ---CTTSCEEECHHHHHH
T ss_pred ---CcCCCCCCCHHHHHH
Confidence 233445677776644
No 15
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.7e-23 Score=215.63 Aligned_cols=200 Identities=11% Similarity=0.063 Sum_probs=147.0
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCcccCcH--------HHHHHHHHHHHHcCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLERSTK--------ESEEAVLQDLSWLGLDWD 122 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~~R~~~--------~~~~~I~~dL~wLGl~wD 122 (443)
.+.++|+| ||.|||||+++|+.+|.+++ .|++++++|.| |+..|... .+.++|..+|.|+|++||
T Consensus 41 ~vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 41 KLYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp EEEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred EEEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 47899988 79999999999999999998 89999999999 86544332 245778889999999999
Q ss_pred CCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCC
Q 013441 123 EGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGT 202 (443)
Q Consensus 123 egp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~ 202 (443)
+.. +|.||++.. +.++++.++ .|.|+||..++++.. . .
T Consensus 118 k~~-------i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~---------~-~-------------------- 155 (394)
T 2dlc_X 118 KLK-------FVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAG---------A-D-------------------- 155 (394)
T ss_dssp TCE-------EEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHT---------T-T--------------------
T ss_pred HcE-------EEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhccc---------H-h--------------------
Confidence 853 799999863 334444444 689999999876431 0 0
Q ss_pred CceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHH
Q 013441 203 PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKA 282 (443)
Q Consensus 203 ~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~a 282 (443)
.+|+ .+ .+ +-|..+|..--+.|...++++||++|+|+..|+..++.|++.
T Consensus 156 --~~r~----------~~-----------~~-------~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r 205 (394)
T 2dlc_X 156 --VVKQ----------VA-----------NP-------LLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPS 205 (394)
T ss_dssp --TSCC----------CS-----------SC-------CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGG
T ss_pred --hhcc----------cC-----------Cc-------cceeeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHH
Confidence 0000 00 00 234567777778888889999999999999999999999999
Q ss_pred cCCCCCcEEEeeceecCC-CceecccCCCCChHHHHHCCCCHHHHHHHHHHh
Q 013441 283 LGFSMPYFAHVSLILAPD-RSKLSKRHGATSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 283 Lg~~~P~f~Hlplil~~d-g~KLSKR~g~~si~~~r~~G~~peai~n~l~~L 333 (443)
||++.|.+.|.|+|.+.+ |+|||||.++..|. + -=.|+.|...+...
T Consensus 206 ~~~~~p~~l~~pll~gl~~G~KMSKS~~ns~I~-L---~D~p~~i~kKI~ka 253 (394)
T 2dlc_X 206 LGYKKRAHLMNPMVPGLAQGGKMSASDPNSKID-L---LEEPKQVKKKINSA 253 (394)
T ss_dssp GTCCCCEEEEECCCCCCC----------CCSCB-T---TCCHHHHHHHHHHS
T ss_pred cCCCCCEEEecccccCCCCCCcCCCCCCCCEEe-c---cCCHHHHHHHHHHh
Confidence 999999999999999999 99999999874331 1 12688999888764
No 16
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.89 E-value=3.7e-23 Score=218.12 Aligned_cols=263 Identities=17% Similarity=0.170 Sum_probs=176.1
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCC----------------cccCcHHHHHHHHHHHHHc
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTD----------------LERSTKESEEAVLQDLSWL 117 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD----------------~~R~~~~~~~~I~~dL~wL 117 (443)
+++.-.|+|||.+||||+|++++..++||. ..|..++++.++| ++..++++.+.+.++++||
T Consensus 8 ~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 87 (497)
T 2csx_A 8 YVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEFL 87 (497)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 567777999999999999999999999995 5999999999999 4556788999999999999
Q ss_pred CCCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeee-----cCCHHHHHHHHHHHHhCCCCCCCCCcCCCCC
Q 013441 118 GLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRC-----FCSNEELEKMKEIAKLKQLPPVYTGKWATAT 190 (443)
Q Consensus 118 Gl~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls 190 (443)
|++||. +|++|+ +.+.+++++++|.++|++|.| +|+..+-... ..+ . ...|.|.. +
T Consensus 88 gi~~d~---------~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~-~~~----~--~~~~~c~~-~ 150 (497)
T 2csx_A 88 KIEYTK---------FIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKS-EAE----L--AEDHTCPI-H 150 (497)
T ss_dssp TCCCSE---------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEC----------------------------------
T ss_pred CCcCCC---------CccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEcc-HHH----h--ccCCCCCC-C
Confidence 999996 578998 999999999999999999998 6776543210 000 0 00134421 1
Q ss_pred HHHHHHHHhcCCCceEEEecCCCCceeeeeccc-----c--ee----------eecCCCCCCeEEEe--cC---Cc--c-
Q 013441 191 DAEVQKELERGTPYTYRFRVPKGGSLKISDLIR-----G--EV----------SWNLDTLGDFVIMR--SN---GQ--P- 245 (443)
Q Consensus 191 ~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~-----G--~i----------~~~~~~~~D~VL~R--sD---G~--P- 245 (443)
...++. -....+.|+++. |.|.+. + .+ .+-...+.|++|.| .+ |. |
T Consensus 151 ~~~~~~----~~~~~wf~~l~~-----~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~ 221 (497)
T 2csx_A 151 QKKCEY----IKEPSYFFRLSK-----YQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPF 221 (497)
T ss_dssp -----------CCEEEEECTTS-----SHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETT
T ss_pred CCCCeE----EecCceEEEcHH-----HHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCC
Confidence 111111 122356666653 111100 0 00 01112467999999 54 54 4
Q ss_pred --ccc----------hhhhhhc---ccCCcceEEecCCCCC----CHHHHHHHHHHcCCCCCc-EEEeeceecCCCceec
Q 013441 246 --VYN----------FCVTVDD---ATMAISHVIRAEEHLP----NTLRQALIYKALGFSMPY-FAHVSLILAPDRSKLS 305 (443)
Q Consensus 246 --tY~----------fA~vVDD---~~m~ITHVIRG~D~l~----ntp~q~~ly~aLg~~~P~-f~Hlplil~~dg~KLS 305 (443)
.++ +++++.| ....+++.+.|.|++. +.+.| ..++|+++|. +.|+++|+. +|+|||
T Consensus 222 ~~~~~i~vW~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~---l~~~g~~~~~~~~~~G~v~~-~G~KMS 297 (497)
T 2csx_A 222 DPEHTIYVWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAF---LMSLGYELPKKVFAHGWWTV-EGKKMS 297 (497)
T ss_dssp EEEEEECSHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHH---HHHHTCCCCSCEEEECCEES-SSSBCC
T ss_pred CCCceEEEecccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHH---HHHcCCCCCcEEEECcEEEe-CCceeC
Confidence 444 2555554 2337788889999976 33333 3577998886 778898777 899999
Q ss_pred ccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHh
Q 013441 306 KRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVE 351 (443)
Q Consensus 306 KR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~ 351 (443)
||.|+ +++.++.+. |.+++++.|++..+ +...+-.|+.+.+.+
T Consensus 298 KS~GN~i~~~dli~~-~g~DalR~~ll~~~--~~~~d~~fs~~~l~~ 341 (497)
T 2csx_A 298 KTLGNVVDPYEVVQE-YGLDEVRYFLLREV--PFGQDGDFSKKAILN 341 (497)
T ss_dssp TTTTCCCCHHHHHHH-HCHHHHHHHHHHSS--CTTSCEECCHHHHHH
T ss_pred CcCCCCCCHHHHHHH-CCcHHHHHHHHhcC--CcccCCCCChHHHHH
Confidence 99998 588888874 88999999998764 233455688887755
No 17
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.89 E-value=5.3e-23 Score=221.87 Aligned_cols=254 Identities=18% Similarity=0.147 Sum_probs=185.0
Q ss_pred ceEEEe-CCCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEEecCCCc-----------------------------
Q 013441 55 QVRVRF-APSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDL----------------------------- 99 (443)
Q Consensus 55 ~vr~RF-APSPTG~LHiG~~rtAL~n~l~Ar-----~~gG~fiLRIEDTD~----------------------------- 99 (443)
+|.+=| .|.|||++||||+|++++-..+|| .+...++-.|.|.+.
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 455555 488999999999999997777776 344555556666541
Q ss_pred -----------------------------ccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceecccc--HHHHHHHHH
Q 013441 100 -----------------------------ERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSER--NSLYKQYAD 148 (443)
Q Consensus 100 -----------------------------~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~QSer--~~~Y~~~a~ 148 (443)
++.++.+.+.+.++++||||.+|.. .+.|+. .+.++++++
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~~---------~~es~~~~~~~v~~~~~ 254 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLL---------VWESDIVRAGLLQKALA 254 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEE---------EEHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEEe---------ccCCcccccchHHHHHH
Confidence 1233456778999999999999862 356665 778999999
Q ss_pred HHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceeeeecccceeee
Q 013441 149 KLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSW 228 (443)
Q Consensus 149 ~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~ 228 (443)
+|.++|++|.|. . + .|+| . +-++++. | |
T Consensus 255 ~L~~kG~~y~~~--~-------------g---~~~G-----------------~---~~~~~~~-----~-----g---- 282 (592)
T 1iq0_A 255 LLEQSPHVFRPR--E-------------G---KYAG-----------------A---LVMDASP-----V-----I---- 282 (592)
T ss_dssp HHTTSTTEECCS--S-------------S---TTTT-----------------C---EEEECTT-----T-----S----
T ss_pred HHHHCCCcccCc--c-------------c---CcCC-----------------C---EEEechh-----c-----C----
Confidence 999999999871 1 1 2332 1 2233332 1 1
Q ss_pred cCCCCCCeEEEecCCccccch---hhhhh------cc-cC----------------------CcceE--EecCCCCCCHH
Q 013441 229 NLDTLGDFVIMRSNGQPVYNF---CVTVD------DA-TM----------------------AISHV--IRAEEHLPNTL 274 (443)
Q Consensus 229 ~~~~~~D~VL~RsDG~PtY~f---A~vVD------D~-~m----------------------~ITHV--IRG~D~l~ntp 274 (443)
....+++.|+.|+||.|+|.+ |.+++ |+ .. +.+|+ |.|.||....+
T Consensus 283 ~~~~l~~~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~ 362 (592)
T 1iq0_A 283 PGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQA 362 (592)
T ss_dssp CSCSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHH
T ss_pred CCCCCCceEEEecCCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHH
Confidence 112346799999999999965 66777 22 21 77888 67999999999
Q ss_pred HHHHHHHHcCCCCC--cEEEee--ceecCCCceecccCCCC-ChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHH-
Q 013441 275 RQALIYKALGFSMP--YFAHVS--LILAPDRSKLSKRHGAT-SVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQ- 348 (443)
Q Consensus 275 ~q~~ly~aLg~~~P--~f~Hlp--lil~~dg~KLSKR~g~~-si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~e- 348 (443)
++..+++++|++.| .+.|++ +|.. +|+|||||.|++ +++++.++|+ +++.+++...++..+ +.| .+.+
T Consensus 363 ~~~~~~~alG~~~~~~~~~H~~~g~v~~-~g~KMSKr~Gn~v~l~dll~~~~--~~~~~~~~~~~~~~~-~~e--~~a~~ 436 (592)
T 1iq0_A 363 LVRAALALAGYPALAEKAHHLAYETVLL-EGRQMSGRKGLAVSVDEVLEEAT--RRARAIVEEKNPDHP-DKE--EAARM 436 (592)
T ss_dssp HHHHHHHHTTCHHHHTTEEEEEECCEEE-TTBCSCC----CCBHHHHHHHHH--HHHHHHHHHHCTTCS-CHH--HHHHH
T ss_pred HHHHHHHHcCCCCCCCcEEEEEeeEEEc-CCCcccCCCCCccCHHHHHHHHH--HHHHHHHHhhCCCCC-cHH--HHHHh
Confidence 99999999999763 688995 4655 688999999985 8999999987 788899988876432 222 3443
Q ss_pred ----HHhccccccccCCCccccHHHHHHHHH
Q 013441 349 ----LVEKFTIERVNKSGAIFDSTKLRWMNG 375 (443)
Q Consensus 349 ----li~~F~l~~v~~~~~~fd~~kL~~~n~ 375 (443)
.+..|.+.....++..||++++.++|+
T Consensus 437 vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~ 467 (592)
T 1iq0_A 437 VALGAIRFSMVKTEPKKQIDFRYQEALSFEG 467 (592)
T ss_dssp HHHHHHHHHHHHSCTTSCEEECHHHHHCSSS
T ss_pred hcHHHHHHHHHhcCCCCCCeecHHHHHHHhc
Confidence 678999999999999999999999987
No 18
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.88 E-value=4.7e-22 Score=208.22 Aligned_cols=236 Identities=17% Similarity=0.147 Sum_probs=165.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEEecCCCcc-------------cCcHHHHHHHHHHHHHcCCCCC
Q 013441 61 APSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDLE-------------RSTKESEEAVLQDLSWLGLDWD 122 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar-----~~gG~fiLRIEDTD~~-------------R~~~~~~~~I~~dL~wLGl~wD 122 (443)
.|+|+|++||||+|+++...+++| .++..|+..++|+|.+ ..++.+++.+.+++++||+.+|
T Consensus 32 GPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d 111 (462)
T 3tqo_A 32 GMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSP 111 (462)
T ss_dssp CCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999998766666 4667899999999973 2246889999999999999987
Q ss_pred CCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee------ecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH
Q 013441 123 EGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR------CFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK 196 (443)
Q Consensus 123 egp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~------Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~ 196 (443)
.. -| +.|++.+.+++++++|+++|+||. +||.+.. +.|..-+. .+.+++
T Consensus 112 ~~-------~p-raTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~--------------~~yg~Ls~-~~~~~~-- 166 (462)
T 3tqo_A 112 DQ-------EP-RATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF--------------KDYGKLSH-RHLDEL-- 166 (462)
T ss_dssp SB-------CC-BGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC--------------TTTTTTTT-CSCC----
T ss_pred cc-------cc-ChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc--------------cccccccC-CChHHh--
Confidence 52 12 689999999999999999999994 5776432 34533221 111111
Q ss_pred HHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------------CCccccchhhhhhc-ccCCcce
Q 013441 197 ELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTVDD-ATMAISH 262 (443)
Q Consensus 197 ~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------------DG~PtY~fA~vVDD-~~m~ITH 262 (443)
..|. |..+ .....+..||+|||. .|.|.||+.|++.. ...|-+.
T Consensus 167 --~~g~----r~~~----------------~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~ 224 (462)
T 3tqo_A 167 --QAGA----RVEV----------------SDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPF 224 (462)
T ss_dssp --------------------------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSE
T ss_pred --hccC----cccc----------------ccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCe
Confidence 1222 1111 011234579999997 57899999997754 3446666
Q ss_pred EEe--cCCCCC----CHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCC
Q 013441 263 VIR--AEEHLP----NTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGW 335 (443)
Q Consensus 263 VIR--G~D~l~----ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~ 335 (443)
.|+ |.|++. |...|.. .+.|.+.+.++.+..+++.+|+|||||.|+ +++.++.+. |.|++++.|+..-.+
T Consensus 225 dih~gG~Dl~FpHheneiaqs~--a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~-~g~dalR~~lls~~y 301 (462)
T 3tqo_A 225 DIHGGGLDLKFPHHENEIAQSE--AGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKE-SDVEVLRYFLLSGHY 301 (462)
T ss_dssp EEEEEEGGGTTTHHHHHHHHHH--HHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHSCT
T ss_pred EEEccccccccHHHHhHHHHHH--HHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhh-cChHHhhhhhccCCC
Confidence 666 888664 5555543 345776677766666677899999999998 699999876 999999999987544
Q ss_pred CCCCCCcccCHHHH
Q 013441 336 GDGTENEFFTLKQL 349 (443)
Q Consensus 336 ~~~~~~e~~s~~el 349 (443)
.. +-.||.+.+
T Consensus 302 r~---~l~fs~~~l 312 (462)
T 3tqo_A 302 RN---PLSYSKENL 312 (462)
T ss_dssp TS---CEEECHHHH
T ss_pred CC---CcCcCHHHH
Confidence 32 223555544
No 19
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.87 E-value=9.3e-22 Score=207.31 Aligned_cols=255 Identities=21% Similarity=0.238 Sum_probs=173.7
Q ss_pred EEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCC----------------cccCcHHHHHHHHHHHHHcCC
Q 013441 58 VRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTD----------------LERSTKESEEAVLQDLSWLGL 119 (443)
Q Consensus 58 ~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD----------------~~R~~~~~~~~I~~dL~wLGl 119 (443)
+--.|+|||.+||||+|++++...+||. ..|..++++.++| +...++++.+.+.+++++||+
T Consensus 8 ~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi 87 (500)
T 2d5b_A 8 TTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGI 87 (500)
T ss_dssp ECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3344788999999999999999999995 5999999999998 445567888999999999999
Q ss_pred CCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeee-----cCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHH
Q 013441 120 DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRC-----FCSNEELEKMKEIAKLKQLPPVYTGKWATATDA 192 (443)
Q Consensus 120 ~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~ 192 (443)
.||. .+++++ +.+.+++++++|.++|++|.+ +|...+-.. .....-+|.|..
T Consensus 88 ~~d~---------~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~--------~~~~l~~g~c~~---- 146 (500)
T 2d5b_A 88 AYDD---------FIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFY--------TEKELVEGLCPI---- 146 (500)
T ss_dssp CCSE---------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEC--------CTTTSBTTBCTT----
T ss_pred cCCC---------CcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCccc--------CchhccCCcCCC----
Confidence 9996 478888 899999999999999999987 343321000 000001244521
Q ss_pred HHHHHHhcCCCce------EEEecCCCCceeeeeccc-------cee----------eecCCCCCCeEEEe--cC---Cc
Q 013441 193 EVQKELERGTPYT------YRFRVPKGGSLKISDLIR-------GEV----------SWNLDTLGDFVIMR--SN---GQ 244 (443)
Q Consensus 193 e~~~~~~~g~~~~------iR~k~~~~~~~~~~D~v~-------G~i----------~~~~~~~~D~VL~R--sD---G~ 244 (443)
.|.+.. +.|+++. |.|.+. ..+ .+-...+.|++|.| .+ |.
T Consensus 147 -------~~~~v~~~~~~~wf~~l~~-----~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~ 214 (500)
T 2d5b_A 147 -------HGRPVERRKEGNYFFRMEK-----YRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGI 214 (500)
T ss_dssp -------TCSBCEEEEEEEEEECGGG-----GHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSC
T ss_pred -------CCCeeeEEecCceEEEcHH-----HHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCcc
Confidence 133322 2233321 111000 000 01113468999999 55 54
Q ss_pred --c---------------------ccchhhhhhcccCCcceEEecCCCCCCHHHHH---HHHHHcCCCCCc-EEEeecee
Q 013441 245 --P---------------------VYNFCVTVDDATMAISHVIRAEEHLPNTLRQA---LIYKALGFSMPY-FAHVSLIL 297 (443)
Q Consensus 245 --P---------------------tY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~---~ly~aLg~~~P~-f~Hlplil 297 (443)
| .|+..+..+++. +.+..+.|.||+. +.+. .+..++|+++|. +.|+++|+
T Consensus 215 piP~~~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~-p~di~~~G~D~~~--fh~~~~~a~~~~~g~~~~~~v~~~G~v~ 291 (500)
T 2d5b_A 215 PLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFW-PHAWHLIGKDILK--PHAVFWPTMLKAAGIPMYRHLNVGGFLL 291 (500)
T ss_dssp EETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHG-GGEEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSEEEEECCEE
T ss_pred ccCCCCCCeeEEccccchhhHHHcCCCCCchHHHcC-CCeEEEEeechhh--hHHHHHHHHHHHcCCCCCcEEEECceEE
Confidence 4 244433333333 5677788999975 3332 234678998886 77889999
Q ss_pred cCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHh
Q 013441 298 APDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVE 351 (443)
Q Consensus 298 ~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~ 351 (443)
..+|+|||||.|+ +++.++.+. |.+++++.|++..+ +...+-.|+.+.+.+
T Consensus 292 ~~~G~KMSKS~GN~i~p~d~i~~-~g~DalR~~ll~~~--~~~~d~~fs~~~~~~ 343 (500)
T 2d5b_A 292 GPDGRKMSKTLGNVVDPFALLEK-YGRDALRYYLLREI--PYGQDTPVSEEALRT 343 (500)
T ss_dssp CTTSSCCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHS--CTTSCEECCHHHHHH
T ss_pred eCCCCcccccCCCCCCHHHHHHh-cCcHHHHHHHHhcC--CcccCCCCCHHHHHH
Confidence 8899999999998 588888875 88999999998764 223445678777654
No 20
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.82 E-value=1.5e-19 Score=184.95 Aligned_cols=251 Identities=14% Similarity=0.091 Sum_probs=166.7
Q ss_pred CceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc-------cCcHHHHHH-HHHHHHHcCCCC
Q 013441 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE-------RSTKESEEA-VLQDLSWLGLDW 121 (443)
Q Consensus 54 ~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~~-------R~~~~~~~~-I~~dL~wLGl~w 121 (443)
..|.++|. |||.|||||+.+++.+|.+.+ .|+++++.|.| |+.. |++..+.+. +...|.|+|++|
T Consensus 36 ~~vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp 112 (372)
T 1n3l_A 36 LKIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPL 112 (372)
T ss_dssp CEEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CEEEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 35788998 579999999999999999987 79999999999 7532 334455555 555679999999
Q ss_pred CCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcC
Q 013441 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERG 201 (443)
Q Consensus 122 Degp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g 201 (443)
++.. +|.||+.. .+.+++..++. |.|+||..++++.. ...
T Consensus 113 ~k~~-------i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~~--------~~v-------------------- 152 (372)
T 1n3l_A 113 EKLK-------FIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKAG--------AEV-------------------- 152 (372)
T ss_dssp TTEE-------EEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHHT--------TTT--------------------
T ss_pred hhcE-------EEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhch--------hhh--------------------
Confidence 9753 89999985 44566666665 88899988765310 000
Q ss_pred CCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHH
Q 013441 202 TPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYK 281 (443)
Q Consensus 202 ~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~ 281 (443)
.|+. ++... |..+|..--+.|-...+.+||++|+|+..|...++.|++
T Consensus 153 ----~~~~---------~~~~~-------------------g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~ 200 (372)
T 1n3l_A 153 ----VKQV---------EHPLL-------------------SGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLP 200 (372)
T ss_dssp ----SCCC---------SSCCH-------------------HHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGG
T ss_pred ----hccc---------CCCcc-------------------eeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHH
Confidence 0000 00111 334555555555556789999999999999999999999
Q ss_pred HcCCCCCcEEEeeceecCCCceecccCCCC--ChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhc-------
Q 013441 282 ALGFSMPYFAHVSLILAPDRSKLSKRHGAT--SVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEK------- 352 (443)
Q Consensus 282 aLg~~~P~f~Hlplil~~dg~KLSKR~g~~--si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~------- 352 (443)
.+|+..|...|.|+|.+.+|+|||||.++. .+.+ .|+.+..++.. -.+++...+.-.+.++++.
T Consensus 201 r~~~~~p~~l~~pll~gldG~KMSKS~~ns~I~L~d------~p~~i~kKi~~-A~td~~~~~d~~v~~~lk~~l~~~~~ 273 (372)
T 1n3l_A 201 ALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLD------RKEDVKKKLKK-AFCEPGNVENNGVLSFIKHVLFPLKS 273 (372)
T ss_dssp GGTCCCCEEEEECCCCCSSCC-------CCSCBTTC------CHHHHHHHHHT-CCCCTTCCSSCHHHHHHHHTTGGGTT
T ss_pred HcCCCCCEEEecCccCCCCcccccCCCCCCeEeccC------CHHHHHHHHHH-ccCCCCCCCcccHHHHHHHhhhhhhc
Confidence 999999999999999999999999999873 3322 59999998865 2333322222334445453
Q ss_pred -cccccccCCCccccHHHHHHHHHHHHhc-CChhHH
Q 013441 353 -FTIERVNKSGAIFDSTKLRWMNGQHLRA-IPSNEL 386 (443)
Q Consensus 353 -F~l~~v~~~~~~fd~~kL~~~n~~~l~~-~~~~~l 386 (443)
|++++-.+.....+.+.+..+...|-.. +...++
T Consensus 274 ~f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~ 309 (372)
T 1n3l_A 274 EFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDL 309 (372)
T ss_dssp CEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHH
T ss_pred ceeecccccccCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 6654333333333445666677777653 444443
No 21
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.82 E-value=6.9e-20 Score=189.68 Aligned_cols=247 Identities=19% Similarity=0.149 Sum_probs=149.3
Q ss_pred EeCCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cCcHHHHHHHHHHHHHcCCC
Q 013441 59 RFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE-------------RSTKESEEAVLQDLSWLGLD 120 (443)
Q Consensus 59 RFAPSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~~-------------R~~~~~~~~I~~dL~wLGl~ 120 (443)
--.|+|+|++||||+|++++...+||. ++..|+..++|.|.+ ...+.+.+.+.+++++||+.
T Consensus 44 ~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~ 123 (414)
T 3c8z_A 44 VCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVL 123 (414)
T ss_dssp ECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 347888899999999999988888875 778899999999854 12467888999999999998
Q ss_pred -CCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHH-HHHHHHHHHhCCCCCCCC--CcCCCCCHHHHHH
Q 013441 121 -WDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEE-LEKMKEIAKLKQLPPVYT--GKWATATDAEVQK 196 (443)
Q Consensus 121 -wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~ee-l~~~r~~~~~~~~~~~Y~--g~cr~ls~~e~~~ 196 (443)
+|.. ++.|++.+.+++++++|+++|++|.+.++.++ +- ..-..|. |.......+++.+
T Consensus 124 ~~d~~---------~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~---------f~~~~~~~~g~l~~~~~~~~~~ 185 (414)
T 3c8z_A 124 PPHDY---------VAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVY---------FRADATAQFGYESGYDRDTMLT 185 (414)
T ss_dssp CCSEE---------EEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEE---------ECTTSSTTTTTTTCCCHHHHHH
T ss_pred CCcce---------ecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEE---------EEchhhhhhHhhcCCCHHHHHH
Confidence 8763 46788999999999999999999987653000 00 0001221 1111223445444
Q ss_pred HHhc--CCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec-------------CCccccchhhhh--hccc-C
Q 013441 197 ELER--GTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV--DDAT-M 258 (443)
Q Consensus 197 ~~~~--g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs-------------DG~PtY~fA~vV--DD~~-m 258 (443)
.+.. +... ........||++||. .|.|.||+.|.. ..++ .
T Consensus 186 ~~~~~~~~~~----------------------~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~ 243 (414)
T 3c8z_A 186 LFAERGGDPD----------------------RPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGT 243 (414)
T ss_dssp HHHHTTCCTT----------------------CTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCS
T ss_pred HHhhcccccc----------------------ccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCC
Confidence 3211 1100 000112345555552 256888887743 2222 1
Q ss_pred CcceEEecCCC----CCCHHHHHHHHHHcCCCCC--cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHH
Q 013441 259 AISHVIRAEEH----LPNTLRQALIYKALGFSMP--YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLA 331 (443)
Q Consensus 259 ~ITHVIRG~D~----l~ntp~q~~ly~aLg~~~P--~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~ 331 (443)
.+.-.+-|.|| ..+.+.|.. .+.|.++| .+.|..+|. .+|+|||||.|+ +++.++.++||.|++++.|++
T Consensus 244 ~~di~~~G~D~~~~H~~~~~a~~~--a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll 320 (414)
T 3c8z_A 244 GLDIQGGGSDLIFPHHEYSAAHAE--SVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLF 320 (414)
T ss_dssp CEEEEEEEGGGTTTHHHHHHHHHH--HHHCCSCSEEEEEEECCBC--------------CBHHHHHHTTCCHHHHHHHHH
T ss_pred CceEEEeccccccHHHHHHHHHHH--HhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhhccCCcchheeEEE
Confidence 22222337774 445555543 22487544 367777754 489999999998 699999999999999999998
Q ss_pred HhCCCCCCCCcccCHHHHHh
Q 013441 332 LLGWGDGTENEFFTLKQLVE 351 (443)
Q Consensus 332 ~LG~~~~~~~e~~s~~eli~ 351 (443)
. + +...+-.|+.+.+.+
T Consensus 321 ~-~--~~~~d~~fs~~~l~~ 337 (414)
T 3c8z_A 321 S-G--HYREDRFWSNEVLDE 337 (414)
T ss_dssp T-S--CTTSCBCCCHHHHHH
T ss_pred e-c--CcCCCCCcCHHHHHH
Confidence 6 2 233344577776654
No 22
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.80 E-value=3.4e-19 Score=186.94 Aligned_cols=97 Identities=22% Similarity=0.276 Sum_probs=80.7
Q ss_pred CCeEEEecCCccccc---hhhhhhcccCCcceEE--ecCCCCCCHHHHHHHHHHcCCCCCcEEEee--ce-ecCCCc--e
Q 013441 234 GDFVIMRSNGQPVYN---FCVTVDDATMAISHVI--RAEEHLPNTLRQALIYKALGFSMPYFAHVS--LI-LAPDRS--K 303 (443)
Q Consensus 234 ~D~VL~RsDG~PtY~---fA~vVDD~~m~ITHVI--RG~D~l~ntp~q~~ly~aLg~~~P~f~Hlp--li-l~~dg~--K 303 (443)
.|.||.||||.|||. +|.++++..++++++| .|.||....+++..+++++|+++|.+.|++ ++ ++.+|+ |
T Consensus 206 ~~~vl~ksDG~~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~K 285 (464)
T 3fnr_A 206 KDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYK 285 (464)
T ss_dssp SCEEEECTTSCBCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECC
T ss_pred CceEEEeCCCceehhhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccC
Confidence 479999999999996 8999999999999995 899999999988899999999988888875 76 667885 9
Q ss_pred ecccCCCC-ChHHHHHCCCCHHHHHHHHH
Q 013441 304 LSKRHGAT-SVGQFREMGYLPQAMVNYLA 331 (443)
Q Consensus 304 LSKR~g~~-si~~~r~~G~~peai~n~l~ 331 (443)
||||.|++ ++.++.++ +-+++++.|+.
T Consensus 286 MSKr~Gn~v~l~dll~~-~g~dalRy~~l 313 (464)
T 3fnr_A 286 MSKRAGNFILMSDVVDE-IGSDALRYIFL 313 (464)
T ss_dssp C---CCSSCBHHHHHHH-HCHHHHHHHTT
T ss_pred CcCcCCCCCCHHHHHhh-ccHHHHHHHHH
Confidence 99999985 88888876 56788877664
No 23
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.80 E-value=1.2e-19 Score=182.35 Aligned_cols=217 Identities=15% Similarity=0.152 Sum_probs=162.8
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC-------CCcccCcHHHHHHHHHHHHHcCCCCCCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED-------TDLERSTKESEEAVLQDLSWLGLDWDEGPGV 127 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED-------TD~~R~~~~~~~~I~~dL~wLGl~wDegp~~ 127 (443)
.+-+-|. |||.|||||+ .++.+|...+..|++.++.|.| ++.....+++.+.+.+++.++|++||...
T Consensus 34 ~vy~G~~--PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~-- 108 (323)
T 2cyb_A 34 RAYVGYE--PSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAK-- 108 (323)
T ss_dssp EEEEEEC--CCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCE--
T ss_pred EEEECcC--CCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceE--
Confidence 3556664 6799999997 7899999999999999999977 32345678888999999999999998743
Q ss_pred CCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEE
Q 013441 128 GGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYR 207 (443)
Q Consensus 128 gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR 207 (443)
.++||+.... .++++ ....|.|.||..++.+.. .|. |.
T Consensus 109 -----i~~qS~~~~~-~~~~~----~~~~l~~~~t~~~l~~~~----------~~~-----------------~~----- 146 (323)
T 2cyb_A 109 -----FVLGSEYQLS-RDYVL----DVLKMARITTLNRARRSM----------DEV-----------------SR----- 146 (323)
T ss_dssp -----EEEGGGTTTS-HHHHH----HHHHHHHHSBHHHHHHHT----------TTT-----------------CS-----
T ss_pred -----EEEcchhccc-hHHHH----HHHHHhCccCHHHHhccc----------hhh-----------------cc-----
Confidence 6899998632 12232 334588999999886531 110 00
Q ss_pred EecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCC
Q 013441 208 FRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSM 287 (443)
Q Consensus 208 ~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~ 287 (443)
. .++ + +.|..+|.+..+.|+...+++||++|.|+..++..+..|.+.||.+.
T Consensus 147 -----------~-------------~~~-~---~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~~ 198 (323)
T 2cyb_A 147 -----------R-------------KED-P---MVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSS 198 (323)
T ss_dssp -----------C-------------SSS-C---BTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCC
T ss_pred -----------c-------------cCC-C---CchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCCC
Confidence 0 001 0 45678999999999999999999999999999999999999999999
Q ss_pred CcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhcc
Q 013441 288 PYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKF 353 (443)
Q Consensus 288 P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F 353 (443)
|...|.|+|.+.+|+||||+.|+ +.+.+ .|++|+..+...- +++...+.-.+.++++.|
T Consensus 199 p~~l~~pll~~l~G~KMSKS~~n~I~l~d------~p~~i~~Ki~~a~-td~~~~~~~~~~~~~~~~ 258 (323)
T 2cyb_A 199 PVCLHTPILVGLDGQKMSSSKGNYISVRD------PPEEVERKIRKAY-CPAGVVEENPILDIAKYH 258 (323)
T ss_dssp CEEEEECCCBCTTSSBCCTTTTCSCBTTC------CHHHHHHHHHTSC-CCTTCCTTCHHHHHHHHT
T ss_pred ceEEecCcccCCCCCcccCCcCceeCCCC------CHHHHHHHHHhcC-CCCCCCCcChHHHHHHHH
Confidence 99999999999999999999775 34432 6999999987642 333222333344455554
No 24
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.78 E-value=2.8e-18 Score=180.92 Aligned_cols=236 Identities=18% Similarity=0.195 Sum_probs=145.4
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEEecCC----------Ccc---c----------CcHHHHHHHHH
Q 013441 61 APSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDT----------DLE---R----------STKESEEAVLQ 112 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar-----~~gG~fiLRIEDT----------D~~---R----------~~~~~~~~I~~ 112 (443)
.|+|+|++||||+|+++...+++| .+...|+..|+|+ |.+ | -.+.+++.+.+
T Consensus 49 gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~ 128 (501)
T 3sp1_A 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFN 128 (501)
T ss_dssp CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHH
T ss_pred CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 577779999999999986655554 5778899999998 442 1 14678899999
Q ss_pred HHHHcCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeee-----ecCCHHHHHHHHHHHHhCCCCCCCCCcCC
Q 013441 113 DLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTGKWA 187 (443)
Q Consensus 113 dL~wLGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr 187 (443)
+++.||+.+|.. .| +.+++.+..++++++|+++|+||. .||...- +.|.
T Consensus 129 d~~~Lgi~~d~~-------~~-~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f--------------~~yG---- 182 (501)
T 3sp1_A 129 DCRKLNIVYPDK-------VL-VASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCF--------------KSYG---- 182 (501)
T ss_dssp HHHHTTCCCCSE-------EE-EGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGC--------------TTTT----
T ss_pred HHHHcCCCCCCc-------cc-CcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCcc--------------CCcc----
Confidence 999999998752 24 689999999999999999999996 4555431 2352
Q ss_pred CCCHHHHHHHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEec----------------CCccccchhh
Q 013441 188 TATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS----------------NGQPVYNFCV 251 (443)
Q Consensus 188 ~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~Rs----------------DG~PtY~fA~ 251 (443)
.|+...+.+.+..|. |.. +........||++||. .|.|.||+.|
T Consensus 183 ~ls~~~~~~~~~~g~----r~~----------------~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEc 242 (501)
T 3sp1_A 183 EMAGIDLIDKDMTLP----RVD----------------VDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLEC 242 (501)
T ss_dssp TTTC-------------------------------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHH
T ss_pred ccCCCChhhhhccCC----ccC----------------cccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHH
Confidence 233222211122332 110 0111235578888876 2678999998
Q ss_pred hhh--cccCCcceEEe--cCCCCC----CHHHHHHHHHHcCCCCCc-EEEeeceecCCCceecccCCC-CChHHHHHCCC
Q 013441 252 TVD--DATMAISHVIR--AEEHLP----NTLRQALIYKALGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGY 321 (443)
Q Consensus 252 vVD--D~~m~ITHVIR--G~D~l~----ntp~q~~ly~aLg~~~P~-f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~ 321 (443)
.+. .++ |-+-.|+ |.|++. |.+.|.. .+.|-+.+. |.|..+|. .+|+|||||.|+ +++.++.++||
T Consensus 243 sam~~~~l-g~~~DIH~gG~DLifpHheneiAqs~--a~~g~~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~~gy 318 (501)
T 3sp1_A 243 AAMNLEYF-KDALDIHLGGVDHIGVHHINEIAIAE--CFLNKKWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLEDQNF 318 (501)
T ss_dssp HHHHHHHT-TTCCCEEEEEGGGTTTHHHHHHHHHH--HHHTSCCCSEEEEECCEE-CC----------CCCHHHHHHTTC
T ss_pred HHHHHHHc-CCCceEEeeccccccchHHHHHHHHH--HccCCCCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHhcCC
Confidence 653 333 4333344 888874 4555543 233544444 66878754 599999999998 69999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCcccCHHHH
Q 013441 322 LPQAMVNYLALLGWGDGTENEFFTLKQL 349 (443)
Q Consensus 322 ~peai~n~l~~LG~~~~~~~e~~s~~el 349 (443)
.|++++.||..-.+. .+-.||.+.+
T Consensus 319 g~d~lR~~lls~~yr---~~l~fs~~~l 343 (501)
T 3sp1_A 319 SPLDFRYLCLTSHYR---NQLKFSLDNL 343 (501)
T ss_dssp CHHHHHHHHHTSCTT---SCEECCHHHH
T ss_pred CHHHHHHHHHhccCC---CCCccCHHHH
Confidence 999999998765333 2334555544
No 25
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.75 E-value=4e-18 Score=184.23 Aligned_cols=249 Identities=16% Similarity=0.197 Sum_probs=179.1
Q ss_pred CCceEEEe-CCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecC-------------------------CC---
Q 013441 53 DGQVRVRF-APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIED-------------------------TD--- 98 (443)
Q Consensus 53 ~~~vr~RF-APSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIED-------------------------TD--- 98 (443)
.++|++=| .|.|||+|||||+|++++-..+||- +...++-.|.| +|
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~ 221 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 221 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence 44688888 7999999999999999977777663 33444444555 11
Q ss_pred --------------------c-----cc-------------------CcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 99 --------------------L-----ER-------------------STKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 99 --------------------~-----~R-------------------~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
+ .| .++.+.+.+.++++.||+..|.. .
T Consensus 222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~---------~ 292 (607)
T 1f7u_A 222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVY---------S 292 (607)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEE---------E
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceee---------c
Confidence 0 11 23456678999999999999863 3
Q ss_pred eccccH-HHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 013441 135 RQSERN-SLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (443)
Q Consensus 135 ~QSer~-~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 213 (443)
.-|+.. +...+.++.|.++|++|.- + |. +-++++.
T Consensus 293 ~ES~~~~~~~~~vi~~L~~kG~~ye~-----------------------d-----------------Ga---~~~~~~~- 328 (607)
T 1f7u_A 293 GESQVSKESMLKAIDLFKEKGLTHED-----------------------K-----------------GA---VLIDLTK- 328 (607)
T ss_dssp EGGGCCHHHHHHHHHHHHHTTCEEEE-----------------------T-----------------TE---EEEEGGG-
T ss_pred CcchhhhhHHHHHHHHHHhCCCEEEE-----------------------C-----------------Cc---EEEEecc-
Confidence 566665 6778999999999999951 1 21 1122221
Q ss_pred CceeeeecccceeeecCCCCCCeEEEecCCccccc---hhhhhhcc-cCCcceEE--ecCCCCCCHHHHHHHHHHcCCCC
Q 013441 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYN---FCVTVDDA-TMAISHVI--RAEEHLPNTLRQALIYKALGFSM 287 (443)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~---fA~vVDD~-~m~ITHVI--RG~D~l~ntp~q~~ly~aLg~~~ 287 (443)
| |+ ..++.|+.|+||.|+|. ||.+++.+ .++.+++| .|.||....++...+.+++|++.
T Consensus 329 ----~-----g~------~~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~ 393 (607)
T 1f7u_A 329 ----F-----NK------KLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEW 393 (607)
T ss_dssp ----T-----CT------TTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGG
T ss_pred ----c-----CC------CCCceeEeccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCc
Confidence 1 21 23468999999999995 68888877 46889988 79999877777778889999976
Q ss_pred C-cEEEeec-eecCCCceecccCCCC-ChHHHHHCCCCHHHHHHHHHHhCCCCCC----CCcccCHHH-----HHhcccc
Q 013441 288 P-YFAHVSL-ILAPDRSKLSKRHGAT-SVGQFREMGYLPQAMVNYLALLGWGDGT----ENEFFTLKQ-----LVEKFTI 355 (443)
Q Consensus 288 P-~f~Hlpl-il~~dg~KLSKR~g~~-si~~~r~~G~~peai~n~l~~LG~~~~~----~~e~~s~~e-----li~~F~l 355 (443)
+ .+.|+++ +++ |||||.|++ +++++.++.+. +| .+ +.. +.++ ..|..++.+ .+..|++
T Consensus 394 ~~~~~Hv~fg~v~----kMSkR~G~~v~L~dLlde~~~-~a-~~-~~~---~~~~~~~~~~e~~~~a~~vgi~avry~~L 463 (607)
T 1f7u_A 394 AKDLQHVNFGMVQ----GMSTRKGTVVFLDNILEETKE-KM-HE-VMK---KNENKYAQIEHPEEVADLVGISAVMIQDM 463 (607)
T ss_dssp GGGEEEECCCCEE----SCCGGGTCCCBHHHHHHHHHH-HH-HH-HHH---TCHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecccccc----cccCCCCCcccHHHHHHHHHH-HH-HH-HHH---hCcccccchhhHHHHHHHHHHHHHHHHHh
Confidence 6 5889987 343 699999985 89999887433 44 22 322 2211 345555665 6789999
Q ss_pred ccccCCCccccHHHHHHHHH---HHHh
Q 013441 356 ERVNKSGAIFDSTKLRWMNG---QHLR 379 (443)
Q Consensus 356 ~~v~~~~~~fd~~kL~~~n~---~~l~ 379 (443)
+...+++..||++++.++|+ -||+
T Consensus 464 s~~~~s~~~Fd~d~~~~~~g~t~pylq 490 (607)
T 1f7u_A 464 QGKRINNYEFKWERMLSFEGDTGPYLQ 490 (607)
T ss_dssp SSCTTCCEECCHHHHHCCSSSSHHHHH
T ss_pred ccCCCCCcccCHHHHHHHhccchHHHH
Confidence 99999999999999999986 5554
No 26
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.71 E-value=3.6e-17 Score=174.18 Aligned_cols=263 Identities=17% Similarity=0.202 Sum_probs=147.7
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCc-------------ccCcHHHHHHHHHHHHHc
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDL-------------ERSTKESEEAVLQDLSWL 117 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~-------------~R~~~~~~~~I~~dL~wL 117 (443)
+++.-.|+|||++||||+|++++...+||. ++..|+..++|.+. ....+.+.+.+.++|++|
T Consensus 28 ~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 107 (536)
T 4dlp_A 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL 107 (536)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 567777899999999999999998888883 44557777777654 234577889999999999
Q ss_pred CCCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeee-----cCCHHHHHHHHHHHHhCCCCCCCCC-cCCCC
Q 013441 118 GLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRC-----FCSNEELEKMKEIAKLKQLPPVYTG-KWATA 189 (443)
Q Consensus 118 Gl~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~eel~~~r~~~~~~~~~~~Y~g-~cr~l 189 (443)
||.+|. -++.++ +.+..++++++|.++|++|.+ ||+..+-.- .+.....+. +| .|.
T Consensus 108 gi~~d~---------~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l-~~~~~~~~~----~g~~c~-- 171 (536)
T 4dlp_A 108 NSSNDD---------YIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYY-GEEETEVRA----DGVRYG-- 171 (536)
T ss_dssp TCCCSE---------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEE-CGGGCEECT----TSCEEC--
T ss_pred CCCCCc---------ceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCccc-CHHHhhcCC----CCCccc--
Confidence 999995 234454 888999999999999999986 565432100 000000000 12 121
Q ss_pred CHHHHHHHHhcCCCceEE------EecCCCCceeeeeccc-------cee----------eecCCCCCCeEEEecC---C
Q 013441 190 TDAEVQKELERGTPYTYR------FRVPKGGSLKISDLIR-------GEV----------SWNLDTLGDFVIMRSN---G 243 (443)
Q Consensus 190 s~~e~~~~~~~g~~~~iR------~k~~~~~~~~~~D~v~-------G~i----------~~~~~~~~D~VL~RsD---G 243 (443)
..|.+..+| |+++. +.|.+. +.+ ++-...+.|++|.|++ |
T Consensus 172 ---------~~g~~~e~~~~~~~f~~l~~-----~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WG 237 (536)
T 4dlp_A 172 ---------PQGTPVEWVEEESYFFRLSA-----YQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWG 237 (536)
T ss_dssp ---------TTSSBCEEEEEEEEEECGGG-----GHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCS
T ss_pred ---------CCCCcceEEeccceEEecHH-----HHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCC
Confidence 023333332 33321 111100 000 1111357899999974 1
Q ss_pred c----------cccc------hhhhh-----hcccC--CcceEEecCCCCCC-HHHHHHHHHHcCCCCCcEE-Eeeceec
Q 013441 244 Q----------PVYN------FCVTV-----DDATM--AISHVIRAEEHLPN-TLRQALIYKALGFSMPYFA-HVSLILA 298 (443)
Q Consensus 244 ~----------PtY~------fA~vV-----DD~~m--~ITHVIRG~D~l~n-tp~q~~ly~aLg~~~P~f~-Hlplil~ 298 (443)
. .+|- ++..- ++... ..+--+-|.|++.. +..+..+..++|.++|.-. .+.+++.
T Consensus 238 ipiP~~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~~ 317 (536)
T 4dlp_A 238 IPVPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFN 317 (536)
T ss_dssp CBCTTCTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEEC
T ss_pred eeCCCCCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEee
Confidence 1 1110 11110 01100 11222348887641 2223345577899888533 3367654
Q ss_pred CCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhc
Q 013441 299 PDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEK 352 (443)
Q Consensus 299 ~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~ 352 (443)
+|+|||||.|+ +++.++.+. |.+++++.|++..+ +.+.+-.|+.+.+++.
T Consensus 318 -~G~KMSKS~GNvi~p~d~i~~-~GaDalR~~ll~~~--~~~~d~~fs~~~~~~~ 368 (536)
T 4dlp_A 318 -RGEKMSKSVGNVIDPFELVER-YGLDQLRYFLMREV--PFGQDGSYSHEAIVNR 368 (536)
T ss_dssp -------------CCHHHHHHH-HCHHHHHHHHHHHS--CTTSCEECCHHHHHHH
T ss_pred -CCceecccCCCCCCHHHHHHH-cCcHHHHHHHHhcC--CCCCCCCCCHHHHHHH
Confidence 99999999998 588888775 78999999998853 2234456888877654
No 27
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.70 E-value=1.9e-16 Score=169.53 Aligned_cols=279 Identities=16% Similarity=0.197 Sum_probs=158.8
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHH--HcCCeEEEEecCCC----------------cccCcHHHHHHHHHHHHHc
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTD----------------LERSTKESEEAVLQDLSWL 117 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLRIEDTD----------------~~R~~~~~~~~I~~dL~wL 117 (443)
+++--.|+|||.+||||+|++++...+|| ...|.-++.+..+| ++...+.+.+.+.++|++|
T Consensus 21 ~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 100 (560)
T 3h99_A 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 100 (560)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 45556699999999999999999999988 34565554444444 3345678889999999999
Q ss_pred CCCCCCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeee-------ecCCHHHHHHHHHHHHhCCCCCCC------
Q 013441 118 GLDWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR-------CFCSNEELEKMKEIAKLKQLPPVY------ 182 (443)
Q Consensus 118 Gl~wDegp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~-------Cfcs~eel~~~r~~~~~~~~~~~Y------ 182 (443)
|+.||. .++.+ ++.+..+++.++|.++|.+|. |-....-+.. + ...|..|.+
T Consensus 101 gi~~d~---------~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~-~---~v~g~cp~c~~~~~~ 167 (560)
T 3h99_A 101 NISYDN---------YHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPD-R---FVKGTCPKCKSPDQY 167 (560)
T ss_dssp TCCCSE---------EEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCG-G---GEEEECTTTCCSSEE
T ss_pred CCCCCC---------ceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecc-h---hcCCCCCCCCCcccc
Confidence 999996 23444 455666788999999999993 3211111100 0 000111111
Q ss_pred CCcC---CC-CCHHHHH--------HHHhcCCCceEEEecCCCCc--------eeeeeccccee-eecCCCCCCeEEEec
Q 013441 183 TGKW---AT-ATDAEVQ--------KELERGTPYTYRFRVPKGGS--------LKISDLIRGEV-SWNLDTLGDFVIMRS 241 (443)
Q Consensus 183 ~g~c---r~-ls~~e~~--------~~~~~g~~~~iR~k~~~~~~--------~~~~D~v~G~i-~~~~~~~~D~VL~Rs 241 (443)
...| .. +.+.++. ....--....+.|+++.-.. ..+.+.+++.+ .+-...+.|+.|.|.
T Consensus 168 gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~ 247 (560)
T 3h99_A 168 GDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRD 247 (560)
T ss_dssp TTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEE
T ss_pred cchhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCcccc
Confidence 1111 10 0000000 00000011234444432000 00111111111 111125789999998
Q ss_pred C---Cccc--------c-------chhhhh------------------hcccCCcceEEecCCCCC-CHHHHHHHHHHcC
Q 013441 242 N---GQPV--------Y-------NFCVTV------------------DDATMAISHVIRAEEHLP-NTLRQALIYKALG 284 (443)
Q Consensus 242 D---G~Pt--------Y-------~fA~vV------------------DD~~m~ITHVIRG~D~l~-ntp~q~~ly~aLg 284 (443)
. |.|. | .+..++ .|....+.||+ |.|++. .+-....++.++|
T Consensus 248 ~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g 326 (560)
T 3h99_A 248 APYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSN 326 (560)
T ss_dssp SSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTT
T ss_pred CCcCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCC
Confidence 8 6531 1 111111 12334457777 999864 1223335678899
Q ss_pred CCCCcE-EEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHh
Q 013441 285 FSMPYF-AHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVE 351 (443)
Q Consensus 285 ~~~P~f-~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~ 351 (443)
++.|.- ..+.+|+. +|+|||||.|+ +++.++.++ |.++|++.||+..+-.. .++-.|+.+.+++
T Consensus 327 ~~~p~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~-~GaDalR~~ll~~~~~~-~~d~~f~~~~~~~ 392 (560)
T 3h99_A 327 FRKPSNLFVHGYVTV-NGAKMSKSRGTFIKASTWLNH-FDADSLRYYYTAKLSSR-IDDIDLNLEDFVQ 392 (560)
T ss_dssp BCCCSEEEEECCEEE-TTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHCCSS-CCCEEECHHHHHH
T ss_pred CCCCcEEEEEeEEEe-CCeeccccCCCcCCHHHHHHH-cCcHHHHHHHHHhCCCC-CCCCCcCHHHHHH
Confidence 988842 22355555 89999999998 689999887 89999999998864311 1233578877764
No 28
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.64 E-value=9.3e-16 Score=162.62 Aligned_cols=257 Identities=18% Similarity=0.247 Sum_probs=158.6
Q ss_pred EeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHcCCC
Q 013441 59 RFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWLGLD 120 (443)
Q Consensus 59 RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~----------------~R~~~~~~~~I~~dL~wLGl~ 120 (443)
=-.|.|||.+||||+|++++...+||. ..|.-++++.++|. ....+.+.+.+.+++++||+.
T Consensus 18 t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~ 97 (524)
T 2x1l_A 18 TAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNIS 97 (524)
T ss_dssp ECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCc
Confidence 334899999999999999999999995 68999999999982 223457889999999999999
Q ss_pred CCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeeee-----cCCHHHHH-HHHHHHHhCCCCCCCCC-cCCCCCH
Q 013441 121 WDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRC-----FCSNEELE-KMKEIAKLKQLPPVYTG-KWATATD 191 (443)
Q Consensus 121 wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~eel~-~~r~~~~~~~~~~~Y~g-~cr~ls~ 191 (443)
+|. .++.|+ +.+..++++++|.++|.+|.. ||...+-. ..++ ...+. +| .|--
T Consensus 98 ~d~---------~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~e--v~~g~----~G~~c~~--- 159 (524)
T 2x1l_A 98 FDR---------FIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENE--TTEQP----DGTRIAT--- 159 (524)
T ss_dssp CSE---------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGG--EEECT----TSCEEET---
T ss_pred CCC---------CeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHH--hccCC----CCCcccc---
Confidence 985 467777 889999999999999999963 55432100 0000 00000 00 1110
Q ss_pred HHHHHHHhcCCCceEE------EecCCCCceeeeec----cc-ce--e----------eecCCCCCCeEEEec---CCcc
Q 013441 192 AEVQKELERGTPYTYR------FRVPKGGSLKISDL----IR-GE--V----------SWNLDTLGDFVIMRS---NGQP 245 (443)
Q Consensus 192 ~e~~~~~~~g~~~~iR------~k~~~~~~~~~~D~----v~-G~--i----------~~~~~~~~D~VL~Rs---DG~P 245 (443)
..|.+..+| |+++. |.|. +. |. + .+-...+.|+.|.|. =|.|
T Consensus 160 -------~~g~~v~~~~~~qwF~~l~~-----~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~ 227 (524)
T 2x1l_A 160 -------ETGAPVTWTEEQTYFFRLSA-----YTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVP 227 (524)
T ss_dssp -------TTCCBEEEEEEEEEEECGGG-----SHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCE
T ss_pred -------ccCCcceEEecCCeEeeHHH-----HHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCcc
Confidence 013332221 22221 1110 01 00 0 011135789999886 2443
Q ss_pred --------ccch-hhhh-----------h--c--ccCCcceEEecCCCCCCHHHHH---HHHHHcCCCCC-cEEEeecee
Q 013441 246 --------VYNF-CVTV-----------D--D--ATMAISHVIRAEEHLPNTLRQA---LIYKALGFSMP-YFAHVSLIL 297 (443)
Q Consensus 246 --------tY~f-A~vV-----------D--D--~~m~ITHVIRG~D~l~ntp~q~---~ly~aLg~~~P-~f~Hlplil 297 (443)
.|.+ ...+ + + ....++.-+-|.|++. +.+. .+..++|+++| .+.++.+|+
T Consensus 228 iP~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~--fh~~~~~a~l~~~g~~~~~~v~~hG~v~ 305 (524)
T 2x1l_A 228 VPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIR--FHTVYWPAFLMSAGLPLPKRIFAHGWLL 305 (524)
T ss_dssp ETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSCEEEECCEE
T ss_pred CCCCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhH--hHHHHHHHHHHHCCCCCCcEEEECcEEE
Confidence 1111 1100 0 0 0113455556888862 3332 23456799887 345558877
Q ss_pred cCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHh
Q 013441 298 APDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVE 351 (443)
Q Consensus 298 ~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~ 351 (443)
. +|+|||||.|+ +++.++.+. |.+++++.|++..+ +...+-.|+.+.+.+
T Consensus 306 ~-~G~KMSKS~GN~v~p~d~i~~-~g~DalR~~ll~~~--~~~~d~~fs~~~l~~ 356 (524)
T 2x1l_A 306 N-RGEKMSKSIGNVVDPVNLVDT-FGLDQVRYFLLREV--PFGQDGSYNEDAIIG 356 (524)
T ss_dssp E-CSCSEETTTEESSCHHHHHHH-HCHHHHHHHHHHHS--CTTSCEEECHHHHHH
T ss_pred e-CCcccCCcCCCCCCHHHHHHH-cChHHHHHHHHhcC--CCCCCCCcCHHHHHH
Confidence 6 89999999998 688888876 88999999998743 222344577776654
No 29
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.60 E-value=2e-15 Score=161.89 Aligned_cols=264 Identities=16% Similarity=0.141 Sum_probs=158.0
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cCcHHHHHHHHHHHHHc
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE-------------RSTKESEEAVLQDLSWL 117 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDTD~~-------------R~~~~~~~~I~~dL~wL 117 (443)
+++--.|.|||.+||||+|++++...+||. ++..|+.-++|.+.+ ..++.+.+.+.+++++|
T Consensus 29 ~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~l 108 (564)
T 3kfl_A 29 FATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEM 108 (564)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 566667899999999999999988888873 556677777776532 23577888999999999
Q ss_pred CCCCCCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeeee-----cCCHHHHHHHHHHHHhCCCCCCCCCcCCCCC
Q 013441 118 GLDWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYRC-----FCSNEELEKMKEIAKLKQLPPVYTGKWATAT 190 (443)
Q Consensus 118 Gl~wDegp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~C-----fcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls 190 (443)
||.+|.. ++.+ ++.+..++++++|.++|.+|.. ||...+-. ..+.+...+ .+.+.+.|....
T Consensus 109 gi~~D~~---------~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~-l~~~~~~~~-~~~~g~~c~~~~ 177 (564)
T 3kfl_A 109 NYDMNYF---------IRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESF-LTAQNVADG-VDRDGKPCKVSL 177 (564)
T ss_dssp TCCCSEE---------EETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEE-ECGGGEEEE-ECTTSCEEEEET
T ss_pred CCCCCcc---------ccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCC-CCHHHhccC-cCCCCCEecccc
Confidence 9999952 3444 4788999999999999999974 55433210 000000000 011222331000
Q ss_pred HHHHHHHHhcCCCceEE------EecCCCCceeeeeccc----------------cee-eecCCCCCCeEEEe---cC--
Q 013441 191 DAEVQKELERGTPYTYR------FRVPKGGSLKISDLIR----------------GEV-SWNLDTLGDFVIMR---SN-- 242 (443)
Q Consensus 191 ~~e~~~~~~~g~~~~iR------~k~~~~~~~~~~D~v~----------------G~i-~~~~~~~~D~VL~R---sD-- 242 (443)
..|.+..+| |+++. |.|.+. .++ ++-...+.|+.|.| ++
T Consensus 178 --------~~g~~~~~~~~~~~f~~l~~-----~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~ 244 (564)
T 3kfl_A 178 --------ESGHVVTWVEEENYMFRLSA-----FRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMN 244 (564)
T ss_dssp --------TTSCBCEEEEEEEEEECGGG-----GHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTT
T ss_pred --------CCCCccEEEecceeEEEHHH-----HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCC
Confidence 024443332 44432 222110 000 11112578999999 33
Q ss_pred -Ccc-----------------ccchhhhh---hc---------c--cC--C-cceEEecCCCCCCHHHHHHH----HHHc
Q 013441 243 -GQP-----------------VYNFCVTV---DD---------A--TM--A-ISHVIRAEEHLPNTLRQALI----YKAL 283 (443)
Q Consensus 243 -G~P-----------------tY~fA~vV---DD---------~--~m--~-ITHVIRG~D~l~ntp~q~~l----y~aL 283 (443)
|.| +| ++... ++ . .. . --|++ |.|++ ..|..+ ..++
T Consensus 245 WGipiP~~~~~v~yVWfDa~~~y-~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~-GkDii---~FH~~~wpa~L~a~ 319 (564)
T 3kfl_A 245 WSIPVPGDERHCIYVWLDALFNY-YTGALTRVATDGTETLDEDHHALNRWPADVHVV-GKDIL---KFHAIYWPAFLMSA 319 (564)
T ss_dssp CSCEETTEEEEEECHHHHHHTHH-HHHHHEEECTTSCEEECSSSTTTTCCSCSEEEE-EGGGH---HHHHTHHHHHHHHT
T ss_pred CCeecCCCCCCEEEEeccCcHHH-HHHhCccccccccccchhcchhhhcCccceEEE-eeccc---chHHHHHHHHHHhC
Confidence 221 12 11111 00 1 00 0 12443 77765 455533 3678
Q ss_pred CCCCCcEE-EeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhc
Q 013441 284 GFSMPYFA-HVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEK 352 (443)
Q Consensus 284 g~~~P~f~-Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~ 352 (443)
|.++|.-. .+.++ +.+|+|||||.|+ +++.++.+. |.+++++.||+..+ +.+++-.|+.+.+++.
T Consensus 320 g~~~~~~v~~hg~v-~~~G~KMSKS~GNvV~p~d~i~~-~G~DalR~~ll~~~--~~~~D~~fs~~~~~~~ 386 (564)
T 3kfl_A 320 ELPLPERLVSHGWW-TKDHKKISKSLGNAFDPVEKAKE-FGIDALKYFLMRES--NFQDDGDYSDKNMVAR 386 (564)
T ss_dssp TCCCCSCEEEECCE-EETTEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHC--CSSCCEECCHHHHHHH
T ss_pred CCCCCcEEEEcccE-eeCCccccccCCCCCCHHHHHHH-cCcHHHHHHHHHcC--CcccCCCCCHHHHHHH
Confidence 99888533 33554 7799999999998 588888776 78999999998853 2234456888877654
No 30
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.55 E-value=2.2e-14 Score=155.65 Aligned_cols=257 Identities=19% Similarity=0.202 Sum_probs=154.3
Q ss_pred CCceEEEe-CCCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEEecCC-----------------------------
Q 013441 53 DGQVRVRF-APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDT----------------------------- 97 (443)
Q Consensus 53 ~~~vr~RF-APSPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRIEDT----------------------------- 97 (443)
.++|.+=| .|.|||++||||+|++++-...||- +...++--|.|.
T Consensus 118 ~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~ 197 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERG 197 (629)
T ss_dssp TCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccc
Confidence 34677766 5899999999999999987777763 444455555664
Q ss_pred --C-c----------------------------------------ccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 98 --D-L----------------------------------------ERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 98 --D-~----------------------------------------~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
| + +..++.+.+.+.++++.||+.+|.. .
T Consensus 198 ~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~---------~ 268 (629)
T 2zue_A 198 LKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLL---------V 268 (629)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEE---------E
T ss_pred cccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccc---------c
Confidence 1 0 1223556778899999999999863 3
Q ss_pred ecccc--HHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 013441 135 RQSER--NSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (443)
Q Consensus 135 ~QSer--~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~ 212 (443)
+.|+. .+..++++++|.++|.+|.+- . ..|+| . +-+++..
T Consensus 269 ~es~~~~~~~v~~vi~~L~~kG~~y~~~--~----------------ge~~G-----------------a---~~v~~~~ 310 (629)
T 2zue_A 269 WESDIVRRKLFEIALELLSKNENFYIPS--D----------------GKYRG-----------------A---FVMDLRK 310 (629)
T ss_dssp EHHHHHHTTHHHHHHHHHHTSTTEECCS--S----------------STTTT-----------------C---EEEECTT
T ss_pred CcCccccchhHHHHHHHHHHCCCccccc--c----------------CCcCC-----------------c---EEEECcc
Confidence 56665 677899999999999999651 0 11322 1 1122221
Q ss_pred CCceeeeecccceeeecCCCCCCeEEEecCCccccc---hhhhhhc--------ccC---------------------Cc
Q 013441 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYN---FCVTVDD--------ATM---------------------AI 260 (443)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~---fA~vVDD--------~~m---------------------~I 260 (443)
| | ....++..|+.|+||.++|. +|.+.+. ... +.
T Consensus 311 -----~-----g----~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~ 376 (629)
T 2zue_A 311 -----L-----F----PDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNA 376 (629)
T ss_dssp -----T-----C----SSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCC
T ss_pred -----c-----C----CccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCC
Confidence 1 1 01122347999999999994 5666552 111 55
Q ss_pred ceEEe--cCCCCCCHHHHHHHHHHcCCCC-C-cEEEe--eceecCCCceecccCC--C-CChHHHHHCCCCHHHHHHHHH
Q 013441 261 SHVIR--AEEHLPNTLRQALIYKALGFSM-P-YFAHV--SLILAPDRSKLSKRHG--A-TSVGQFREMGYLPQAMVNYLA 331 (443)
Q Consensus 261 THVIR--G~D~l~ntp~q~~ly~aLg~~~-P-~f~Hl--plil~~dg~KLSKR~g--~-~si~~~r~~G~~peai~n~l~ 331 (443)
.|+|- |.+|..--++-..+.+++|++. + .+.|+ .+|.. +|.|||||.| + ++++++.+++ -+....-+.
T Consensus 377 d~~IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~~-~~~KMSkr~G~~n~v~l~dLl~e~--~~~a~~~~~ 453 (629)
T 2zue_A 377 NIVINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVER-PEGKFSGRKGTWVGFTVDEVIQEA--VKRARELIE 453 (629)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEEB-TTBCCCTTTTTTTTCBHHHHHHHH--HHHHHHHHH
T ss_pred CcEEEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEEc-CCCcccCCCCCCCeeeHHHHHHHH--HHHHHHHHH
Confidence 66664 6666422222235667889976 4 57788 56554 6779999999 7 5888887753 111111111
Q ss_pred HhCCCCCCCCc------ccCHHHHHhccccccccCCCccccHHHHHHHHH
Q 013441 332 LLGWGDGTENE------FFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNG 375 (443)
Q Consensus 332 ~LG~~~~~~~e------~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~ 375 (443)
.-+-. -++.+ .+.. +.+..|.+..-..++..||++++..+++
T Consensus 454 ~~~~~-~~~~~~~~~a~~vg~-~AvRy~~L~~~~~~~~~Fd~d~~~~~~~ 501 (629)
T 2zue_A 454 EKNPA-LSDEEKAEVAEKVGI-GAIRYNLIKYSPDKKIIFRWEDVLNFEG 501 (629)
T ss_dssp HHCTT-SCHHHHHHHHHHHHH-HHHHHHHHSSCTTSCEECCHHHHSCCSS
T ss_pred hcCcc-cchhhHHHHHHhcCh-hHhhHHHHhcCCCCCCeecHHHHHHHhc
Confidence 11100 00000 0111 2345666666556667777777665544
No 31
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=99.52 E-value=1.7e-13 Score=138.55 Aligned_cols=237 Identities=19% Similarity=0.256 Sum_probs=163.4
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----C----CcccCcHHHHHHHHHHHHHcCCCCCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----T----DLERSTKESEEAVLQDLSWLGLDWDEGPG 126 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----T----D~~R~~~~~~~~I~~dL~wLGl~wDegp~ 126 (443)
..++.....|||.|||||+..++.||...+..|.+.++.|.| | |+++ ..+....+..++.++|++|+...
T Consensus 12 ~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~-~~~~~~~~~~~~lA~Gldp~k~~- 89 (340)
T 2g36_A 12 HMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK-LKEYTRDLVRGFLACGIDPEKSV- 89 (340)
T ss_dssp CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTTCCTTTSE-
T ss_pred CCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH-HHHHHHHHHHHHHHhCCChhHeE-
Confidence 457777788899999999999999999999999999999999 6 5554 67777888899999999998653
Q ss_pred CCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceE
Q 013441 127 VGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTY 206 (443)
Q Consensus 127 ~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~i 206 (443)
.|.||+..+ |.+. ...+.|++|-.+++++-. |.. ++ +
T Consensus 90 ------if~qS~~~~-~~el-------~~~l~~~~~v~~l~r~~~----------~k~--------~~-~---------- 126 (340)
T 2g36_A 90 ------IFVQSGVKE-HAEL-------ALLFSMIVSVSRLERVPT----------YKE--------IK-S---------- 126 (340)
T ss_dssp ------EEEGGGCTH-HHHH-------HHHHHTTSCHHHHHTCHH----------HHT--------C-------------
T ss_pred ------EEECCchHH-HHHH-------HHHHHccCCHHHHHHhHH----------HHh--------HH-H----------
Confidence 689999865 3332 234668888888764311 100 00 0
Q ss_pred EEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC--
Q 013441 207 RFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG-- 284 (443)
Q Consensus 207 R~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg-- 284 (443)
|++ ..|. + +-|..+|-.--+.|=...+.++|+.|+|...+.-....|.+.|+
T Consensus 127 r~~--------~~~~----~--------------~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~ 180 (340)
T 2g36_A 127 ELN--------YKDL----S--------------TAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYL 180 (340)
T ss_dssp -------------CC----C--------------SHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHH
T ss_pred Hhc--------cCCC----C--------------ChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhh
Confidence 000 0000 0 11233444444445445799999999999988877777777664
Q ss_pred ----CCCCc--EEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCC--------CCCCcccCHHHH
Q 013441 285 ----FSMPY--FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGD--------GTENEFFTLKQL 349 (443)
Q Consensus 285 ----~~~P~--f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~--------~~~~e~~s~~el 349 (443)
++.|. ..|.|+|.+.+|+||||+.++ +.+.+ .|+.+..++... .++ +.+.+...+-++
T Consensus 181 yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~~Ki~~a-~td~~~~~~~~~~~p~~~~v~~~ 253 (340)
T 2g36_A 181 YDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELEQTILRM-MTDPARVRRSDPGNPENCPVWKY 253 (340)
T ss_dssp SCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHHHHHHTC-CCCTTCSSTTSCCCGGGCHHHHH
T ss_pred cccccCCchhhhccccccCCCCccccCCCCCCeEeeeC------CHHHHHHHHHhC-CCCcccccccCCCCCchhHHHHH
Confidence 34565 446899999999999999886 34433 899999998764 222 123455566667
Q ss_pred HhccccccccCCCccccHHHHHHHHHHHHh
Q 013441 350 VEKFTIERVNKSGAIFDSTKLRWMNGQHLR 379 (443)
Q Consensus 350 i~~F~l~~v~~~~~~fd~~kL~~~n~~~l~ 379 (443)
++.|. ++.+++..+...|-.
T Consensus 254 ~~~f~----------~~~~~ieel~~~~~~ 273 (340)
T 2g36_A 254 HQAFD----------ISEEESKWVWEGCTT 273 (340)
T ss_dssp HHHTT----------CCHHHHHHHHHHHHT
T ss_pred HHHHC----------CCHhHHHHHHHHHhc
Confidence 77664 267777788888865
No 32
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=99.41 E-value=2.5e-12 Score=129.79 Aligned_cols=233 Identities=15% Similarity=0.151 Sum_probs=152.4
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcC-CeEEEEecC----CCc---c-cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 013441 63 SPTGNLHVGGARTALFNYLFARSKG-GKFVLRIED----TDL---E-RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~~g-G~fiLRIED----TD~---~-R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gp 133 (443)
-|||.|||||+..++.+|+..+..| .+.++.|.| |.. . ....+....+..++.++|++++... .
T Consensus 9 ~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~-------i 81 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVT-------L 81 (337)
T ss_dssp CSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSE-------E
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheE-------E
Confidence 3679999999999999999888877 788899998 322 1 2456677788899999999998643 6
Q ss_pred eeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 013441 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (443)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 213 (443)
|.||+..+ +.+.+. .+.|+++-.+++++-. | .+++..+
T Consensus 82 ~~qS~~~~-~~el~~-------~l~~~~~~~~l~r~~~----------~------------k~r~~~~------------ 119 (337)
T 2el7_A 82 FVQSHVPE-HTELSW-------VFTTLTPLGDLTRMTQ----------F------------KDKASKQ------------ 119 (337)
T ss_dssp EEGGGSTH-HHHHHH-------HHHHTSBHHHHHTSHH----------H------------HHHTTSS------------
T ss_pred EEcCcchh-hHHHHH-------HHHccCCHHHHHHhHH----------H------------HHHhccC------------
Confidence 89999875 333332 3668888888764311 1 1111000
Q ss_pred CceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHc----C--CCC
Q 013441 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL----G--FSM 287 (443)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aL----g--~~~ 287 (443)
..+ +=|..+|-.--+.|=...+.++|+.|+|...+.-....|.+.| | +..
T Consensus 120 ~~~------------------------~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~ 175 (337)
T 2el7_A 120 ETV------------------------WSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPE 175 (337)
T ss_dssp SCC------------------------BHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred CCC------------------------ChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCC
Confidence 000 0122344333344444568999999999998887777777655 6 678
Q ss_pred CcEEEe---eceecCCC-ceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCC-------CCCCcccCHHHHHhcccc
Q 013441 288 PYFAHV---SLILAPDR-SKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGD-------GTENEFFTLKQLVEKFTI 355 (443)
Q Consensus 288 P~f~Hl---plil~~dg-~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~-------~~~~e~~s~~eli~~F~l 355 (443)
|...|. |+|.+.+| +||||+.++ +.+.+ .|+.+..++...--.. +.+.+...+-++.+.|+
T Consensus 176 P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d------~p~~i~~Ki~~a~td~~~~~~~~~~~p~~~~v~~~~~~~t- 248 (337)
T 2el7_A 176 PQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE------PEESIWQKIQHLPDDPQRIRLSDPGDPERTILFTYLSYFA- 248 (337)
T ss_dssp CEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS------CHHHHHHHHHTCCCCC-------------CHHHHHHHHHS-
T ss_pred CeeecccccccccCCCCccccCCCCCCeeeCcC------CHHHHHHHHHhCCCCCccccccCCCCCchhhHHHHHHHcC-
Confidence 888887 89999999 999999987 33322 5999999887542111 11234445566666663
Q ss_pred ccccCCCccccHHHHHHHHHHHHh-cCChhH
Q 013441 356 ERVNKSGAIFDSTKLRWMNGQHLR-AIPSNE 385 (443)
Q Consensus 356 ~~v~~~~~~fd~~kL~~~n~~~l~-~~~~~~ 385 (443)
+.+++..+..+|-. .+...+
T Consensus 249 ----------~~~~i~~l~~~~~~g~~~~~~ 269 (337)
T 2el7_A 249 ----------PKDLVEALKEEYRKAGVGTYV 269 (337)
T ss_dssp ----------CHHHHHHHHHHHHTTCSCHHH
T ss_pred ----------ChHHHHHHHHHHHhCCCCHHH
Confidence 12577778888875 454443
No 33
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=99.39 E-value=1.5e-12 Score=132.75 Aligned_cols=256 Identities=13% Similarity=0.104 Sum_probs=166.6
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCc--cc---CcHHHHHHHHHHHHHcCCCCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDL--ER---STKESEEAVLQDLSWLGLDWDEGP 125 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~--~R---~~~~~~~~I~~dL~wLGl~wDegp 125 (443)
.+-+-|.| ||.||||| ..++.+|...+..|.+.++.|.| |+. .+ ...+....+..++.++|++|+...
T Consensus 37 ~iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~~ 113 (364)
T 2cya_A 37 KGYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVR 113 (364)
T ss_dssp EEEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCE
T ss_pred EEEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 45677876 69999999 99999999999999999999999 433 13 345667788999999999998643
Q ss_pred CCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCce
Q 013441 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYT 205 (443)
Q Consensus 126 ~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~ 205 (443)
.+.||+.... ..+...+++ +.|.+|-.++.++ +.|-++.
T Consensus 114 -------i~~qS~~~~~-~~~~~~~~~----l~~~~t~~~l~r~----------~~~k~r~------------------- 152 (364)
T 2cya_A 114 -------FVDAEELASD-KDYWGLVIR----VAKRASLARVRRA----------LTIMGRR------------------- 152 (364)
T ss_dssp -------EEEHHHHHTC-HHHHHHHHH----HHHTSCHHHHHTT----------C-------------------------
T ss_pred -------EEecchhhcc-hHHHHHHHH----HHCcCcHHHHHcC----------chhhhhh-------------------
Confidence 5889987643 344444442 5688888777532 1121100
Q ss_pred EEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCC
Q 013441 206 YRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGF 285 (443)
Q Consensus 206 iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~ 285 (443)
. .+.. + +-|..+|-.--+.|=...+.++|+.|.|...+.-....+.+.||.
T Consensus 153 ---~--~~~~----------i--------------~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~ 203 (364)
T 2cya_A 153 ---A--EEAE----------V--------------DASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGR 203 (364)
T ss_dssp ---C--CGGG----------S--------------CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTC
T ss_pred ---c--CCCC----------c--------------cchhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCC
Confidence 0 0000 0 123455555556665567999999999999888888888899999
Q ss_pred CCCcEEEeeceecCC-----------------CceecccC-C-CCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCH
Q 013441 286 SMPYFAHVSLILAPD-----------------RSKLSKRH-G-ATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTL 346 (443)
Q Consensus 286 ~~P~f~Hlplil~~d-----------------g~KLSKR~-g-~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~ 346 (443)
+.|...|.|+|.+.+ |+||||++ + ++.+.+ .|+.+..++... .+++...+.-.+
T Consensus 204 ~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d------~p~~i~~Ki~~a-~td~~~~~~~~v 276 (364)
T 2cya_A 204 KKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVD------SDDDIRRKIRKA-YCPAKQVQGNPV 276 (364)
T ss_dssp CCCEEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTC------CHHHHHHHHHTS-CCCTTCCTTCHH
T ss_pred CCceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccC------CHHHHHHHHHhC-cCCCCCCCCCcH
Confidence 999999999999998 78999995 3 345533 699999988763 233322233335
Q ss_pred HHHHhccccccccC---------CCccccHHHHHHHHHHHHhc-CChhHHHHHH
Q 013441 347 KQLVEKFTIERVNK---------SGAIFDSTKLRWMNGQHLRA-IPSNELTKLI 390 (443)
Q Consensus 347 ~eli~~F~l~~v~~---------~~~~fd~~kL~~~n~~~l~~-~~~~~l~~~~ 390 (443)
-++++.|.+....+ .+...+.+.+..+...|-.. +...++-+.+
T Consensus 277 ~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~l 330 (364)
T 2cya_A 277 LEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAV 330 (364)
T ss_dssp HHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 55666665432221 11123344556666777653 4554433333
No 34
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=99.36 E-value=2e-12 Score=131.29 Aligned_cols=235 Identities=20% Similarity=0.230 Sum_probs=153.3
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCc------ccCcHHHHHHHHHHHHHcCCCCCCCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDL------ERSTKESEEAVLQDLSWLGLDWDEGPGVG 128 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~------~R~~~~~~~~I~~dL~wLGl~wDegp~~g 128 (443)
.+-+.|.| ||.|||||+..++.+|...+.....+++.-|++.. .....+....+..++.++|++|+...
T Consensus 24 ~vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~--- 98 (351)
T 1yi8_B 24 RVLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTT--- 98 (351)
T ss_dssp EEEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEE---
T ss_pred EEEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcE---
Confidence 46688887 59999999999999997666554455555444322 12456677788899999999998643
Q ss_pred CCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHh-cCCCceEE
Q 013441 129 GDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELE-RGTPYTYR 207 (443)
Q Consensus 129 g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~-~g~~~~iR 207 (443)
.|.||+... |.+. ...|.|+++-.++.++-. | .+++. .|
T Consensus 99 ----i~~qS~~~~-~~el-------~~~l~~~~~v~~l~r~~~----------~------------k~~~~~~~------ 138 (351)
T 1yi8_B 99 ----CVVQSAVPE-LAEL-------TVYFLNLVTVSHLRQNPT----------V------------KAEIAQKG------ 138 (351)
T ss_dssp ----EEEGGGCTH-HHHH-------HHHHHTTSBHHHHHTCHH----------H------------HHHHHHHT------
T ss_pred ----EEEcCchhh-HHHH-------HHHHhccCCHHHHHhhhH----------H------------HHHHhhcC------
Confidence 688999875 3322 235779999888864211 1 11111 01
Q ss_pred EecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHc----
Q 013441 208 FRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL---- 283 (443)
Q Consensus 208 ~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aL---- 283 (443)
|.+ .+ +-|..+|-.--+.|=...+.++|+.|+|...+.-....|.+.|
T Consensus 139 ----------f~~----~~--------------~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~y 190 (351)
T 1yi8_B 139 ----------YGE----RV--------------PAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALY 190 (351)
T ss_dssp ----------CTT----CC--------------BHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHT
T ss_pred ----------CCC----CC--------------chHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhc
Confidence 000 00 1123445444455544568999999999998888777777665
Q ss_pred C--CCCCcEE--EeeceecCCCc-eecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCC--------CCCcccCHHHH
Q 013441 284 G--FSMPYFA--HVSLILAPDRS-KLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDG--------TENEFFTLKQL 349 (443)
Q Consensus 284 g--~~~P~f~--Hlplil~~dg~-KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~--------~~~e~~s~~el 349 (443)
| ++.|... |.|+|.+.+|+ ||||+.++ +.+.+ .|+.+..++... .+++ .+.+..+.-++
T Consensus 191 g~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d------~p~~i~~Ki~~a-~td~~~~~~~~~~~~~~~~~~~~ 263 (351)
T 1yi8_B 191 APVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD------SADEVARKVMGM-YTDPGHLRASDPGRVEGNPVFTF 263 (351)
T ss_dssp CSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC------CHHHHHHHHHTC-CCCTTCCSTTSCCCCTTCTTHHH
T ss_pred ccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC------CHHHHHHHHHhc-CCCcccccccCCCCCccchHHHH
Confidence 4 5667643 57999999997 99999987 33322 599999988753 1111 22344455556
Q ss_pred HhccccccccCCCccccHHHHHHHHHHHHh
Q 013441 350 VEKFTIERVNKSGAIFDSTKLRWMNGQHLR 379 (443)
Q Consensus 350 i~~F~l~~v~~~~~~fd~~kL~~~n~~~l~ 379 (443)
+..|. ++.+.+..+...|-.
T Consensus 264 l~~~~----------~~~~~ieel~~~~~~ 283 (351)
T 1yi8_B 264 LDAFD----------PDPARVQALKDQYRA 283 (351)
T ss_dssp HHHHC----------SCHHHHHHHHHHHHH
T ss_pred HHHHc----------CChhHHHHHHHHHHc
Confidence 66663 367777778888876
No 35
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=99.35 E-value=3e-12 Score=128.77 Aligned_cols=191 Identities=17% Similarity=0.152 Sum_probs=133.0
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceec
Q 013441 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE--RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~~--R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~Q 136 (443)
-|||.|||||+..++.||+..+. |.+.++.|.| |++. ....+....+.+++.++|++|+... .|.|
T Consensus 9 ~PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~-------if~q 80 (328)
T 1i6k_A 9 QPSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQAT-------LFIQ 80 (328)
T ss_dssp CCCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEE-------EEEG
T ss_pred CCCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcE-------EEec
Confidence 36799999999999999998765 8899999999 7531 2456667788899999999998643 6899
Q ss_pred cccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCce
Q 013441 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSL 216 (443)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~ 216 (443)
|+..+ +.+..-. +.|.++-.+++++.. | ..+...+. .
T Consensus 81 S~~~~-~~~l~w~-------l~~~~~~~~l~r~~~----------~------------k~~~~~~~------------~- 117 (328)
T 1i6k_A 81 SEVPA-HAQAAWM-------LQCIVYIGELERMTQ----------F------------KEKSAGKE------------A- 117 (328)
T ss_dssp GGCTH-HHHHHHH-------HHHHSCHHHHHTCHH----------H------------HHHHTTCS------------S-
T ss_pred Cchhh-hhHHHHH-------HhccccHHHHHHHHH----------H------------HHHHhccC------------C-
Confidence 99865 3333322 347888888775431 1 01110000 0
Q ss_pred eeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC------CCCCcE
Q 013441 217 KISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMPYF 290 (443)
Q Consensus 217 ~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg------~~~P~f 290 (443)
. +=|..+|-.--+.|=...+.++|+.|+|...+.-....|.+.|| +..|..
T Consensus 118 ----~-------------------~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~ 174 (328)
T 1i6k_A 118 ----V-------------------SAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEA 174 (328)
T ss_dssp ----C-------------------CHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEE
T ss_pred ----C-------------------CchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCee
Confidence 0 01223443333444445699999999999988877777777776 567776
Q ss_pred EE---eeceecCCC--ceecccCCC----CChHHHHHCCCCHHHHHHHHHHh
Q 013441 291 AH---VSLILAPDR--SKLSKRHGA----TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 291 ~H---lplil~~dg--~KLSKR~g~----~si~~~r~~G~~peai~n~l~~L 333 (443)
.+ .|+|.+.+| +||||+.++ +.+. =.|+.|..-+...
T Consensus 175 li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~------d~~~~i~~KI~~a 220 (328)
T 1i6k_A 175 RIPKVGARIMSLVDPTKKMSKSDPNPKAYITLL------DDAKTIEKKIKSA 220 (328)
T ss_dssp ECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTT------CCHHHHHHHHHHC
T ss_pred eeccccccccCCCCCccCCCCCCCCcCceeeec------CCHHHHHHHHHhc
Confidence 64 589999999 899999988 3332 2788888888764
No 36
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=99.35 E-value=2.4e-12 Score=130.50 Aligned_cols=196 Identities=14% Similarity=0.112 Sum_probs=134.3
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC-------CCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcee
Q 013441 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED-------TDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED-------TD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~ 135 (443)
-|||.|||||+..++.+|...+. |.+.++.|.| .|++ ...+....+..++.++||+|+... .|.
T Consensus 12 ~PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~~-------if~ 82 (348)
T 2yy5_A 12 QASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKAC-------LFL 82 (348)
T ss_dssp CCCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEE-------EEE
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHeE-------EEE
Confidence 36799999999999999987776 7899999999 4443 456667788899999999998643 689
Q ss_pred ccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCc
Q 013441 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGS 215 (443)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 215 (443)
||+..+ +.+..-. +.|+++..+|+++.. |...... .+ |
T Consensus 83 qS~~~~-~~el~w~-------l~~~~~~~~l~R~~~----------~k~~~~~-----------~~------~------- 120 (348)
T 2yy5_A 83 QSDLLE-HSMMGYL-------MMVQSNLGELQRMTQ----------FKAKKAE-----------QT------R------- 120 (348)
T ss_dssp GGGCHH-HHHHHHH-------HHHHSBHHHHHHCHH----------HHTTC-----------------------------
T ss_pred CCcccc-hhHHHHH-------HHhhccHHHHhchHH----------HHHHHHh-----------hc------c-------
Confidence 999876 3333222 358889998876532 2100000 00 0
Q ss_pred eeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC------CCCCc
Q 013441 216 LKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMPY 289 (443)
Q Consensus 216 ~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg------~~~P~ 289 (443)
.|+| .|- -+-|..+|-.--+.|=.+.+.++|+.|+|...+.-....|.+.|+ ++.|.
T Consensus 121 -~~~~-------------~~~---~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~ 183 (348)
T 2yy5_A 121 -NPNG-------------TLN---IPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQ 183 (348)
T ss_dssp --------------------C---CBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_pred -cccc-------------CCC---CChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCe
Confidence 0111 000 012334554444555456799999999999988777777777775 67898
Q ss_pred EEE---eeceecCCC--ceecccCCC----CChHHHHHCCCCHHHHHHHHHH
Q 013441 290 FAH---VSLILAPDR--SKLSKRHGA----TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 290 f~H---lplil~~dg--~KLSKR~g~----~si~~~r~~G~~peai~n~l~~ 332 (443)
..| .|+|.+.+| +||||+.++ +.+.+ .|+.|..-+..
T Consensus 184 ~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D------~~~~i~~KI~~ 229 (348)
T 2yy5_A 184 FVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD------PKEVVVKKIRQ 229 (348)
T ss_dssp EECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC------CHHHHHHHHHT
T ss_pred eecccccccccCCCCcchhcCCCCCCCCceEeecC------CHHHHHHHHHh
Confidence 888 589999998 899999988 33322 67888877765
No 37
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.33 E-value=8.5e-12 Score=137.41 Aligned_cols=89 Identities=24% Similarity=0.252 Sum_probs=69.2
Q ss_pred CCCCCCcCChhhHHH-HHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHcCCCC
Q 013441 61 APSPTGNLHVGGART-ALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWLGLDW 121 (443)
Q Consensus 61 APSPTG~LHiG~~rt-AL~n~l~Ar~--~gG~fiLRIEDTD~----------------~R~~~~~~~~I~~dL~wLGl~w 121 (443)
.|.|||.+||||+++ .+....+||. ..|.-++.+-.||. ...+.++.+.+.+++++||+.|
T Consensus 10 ~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~lgis~ 89 (722)
T 1rqg_A 10 LPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKISF 89 (722)
T ss_dssp CCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 489999999999998 8988888874 45665555554442 2235678899999999999999
Q ss_pred CCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeee
Q 013441 122 DEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 122 Degp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (443)
|. .++-++ +...-+++.++|.++|.+|.
T Consensus 90 D~---------~~rT~d~~~~~~v~~~f~~L~~kG~iY~ 119 (722)
T 1rqg_A 90 DF---------FGRTELPIHYKLSQEFFLKAYENGHLVK 119 (722)
T ss_dssp SE---------EEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CC---------CeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 96 345443 66777889999999999997
No 38
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.33 E-value=1.1e-11 Score=131.84 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=71.5
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc---c-------------cCcHHHHHHHHHHHHHcCCCCC
Q 013441 61 APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL---E-------------RSTKESEEAVLQDLSWLGLDWD 122 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~---~-------------R~~~~~~~~I~~dL~wLGl~wD 122 (443)
.|.|||.|||||+++.+....++|. ..|.=++.+.+||. + .-.+++.+.+.+++++||+.+|
T Consensus 17 ~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~lgi~~D 96 (542)
T 3u1f_A 17 IYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQMDYSID 96 (542)
T ss_dssp EEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccC
Confidence 3899999999999999999999985 57887888888885 1 1246788899999999999998
Q ss_pred CCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeee
Q 013441 123 EGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 123 egp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (443)
- .++-+ ++...-+++..+|.++|.+|.
T Consensus 97 ~---------~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 97 Y---------FIRTTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp E---------EEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred c---------CccCCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 5 23333 355667788899999999997
No 39
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=99.32 E-value=1.8e-11 Score=122.47 Aligned_cols=211 Identities=12% Similarity=0.139 Sum_probs=142.0
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----C-C--cccCcHHHHHHHHHHHHHcCCCCCCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----T-D--LERSTKESEEAVLQDLSWLGLDWDEGPGV 127 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----T-D--~~R~~~~~~~~I~~dL~wLGl~wDegp~~ 127 (443)
.+-+.|.| ||.||||| ..++.+|...+..|.+.++.|-| | | ....+.+....+..++.++|++ ..
T Consensus 30 ~vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d-~~---- 101 (314)
T 2zp1_A 30 SAYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK-AK---- 101 (314)
T ss_dssp EEEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC-CE----
T ss_pred EEEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC-eE----
Confidence 46788888 58999999 99999999999999999999966 2 2 2245677788999999999998 32
Q ss_pred CCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEE
Q 013441 128 GGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYR 207 (443)
Q Consensus 128 gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR 207 (443)
.+.||+.... .++.+.++ .+.|.+|-.++.++. ..+...
T Consensus 102 -----~~~qs~~~~~-~~~~~~~~----~l~~~~t~~~l~~~~---------~~~~~~---------------------- 140 (314)
T 2zp1_A 102 -----YVYGSEFQLD-KDYTLNVY----RLALKTTLKRARRSM---------ELIARE---------------------- 140 (314)
T ss_dssp -----EEEGGGTTTS-HHHHHHHH----HHHHHSCHHHHHHHT---------TTTSCC----------------------
T ss_pred -----EEECChhhcc-hHHHHHHH----HHHCcCcHHHHhccc---------hhhhhc----------------------
Confidence 4679998654 44555555 367888888886542 111100
Q ss_pred EecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCC
Q 013441 208 FRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSM 287 (443)
Q Consensus 208 ~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~ 287 (443)
. ++ . +=|..+|-.--+.|=...++++|+.|+|...+. .+-+-+.-+.
T Consensus 141 ----~---------------------~~-~---~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~----~l~R~i~~~~ 187 (314)
T 2zp1_A 141 ----D---------------------EN-P---KVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIH----MLARELLPKK 187 (314)
T ss_dssp ----C---------------------SS-C---CTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHH----HHHHHHSSSC
T ss_pred ----c---------------------CC-C---CchhhhhHHHHHHhHHhhCCCEEEcChhHHHHH----HHHHHhcCCC
Confidence 0 00 0 112233333334443445899999999986543 3444444477
Q ss_pred CcEEEeeceecCCC-ceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccc
Q 013441 288 PYFAHVSLILAPDR-SKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFT 354 (443)
Q Consensus 288 P~f~Hlplil~~dg-~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~ 354 (443)
|...|.|+|.+.+| +||||+.++ ..+.+ .|+.|..-+... .+++...+..++-++++.|.
T Consensus 188 ~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d------~~~~i~~KI~~a-~td~~~~~~~~~~~~~~~~~ 249 (314)
T 2zp1_A 188 VVCIHNPVLTGLDGEGKMSSSKGNFIAVDD------SPEEIRAKIKKA-YCPAGVVEGNPIMEIAKYFL 249 (314)
T ss_dssp CEEEEECCCBCTTSSSBCCTTTTCSCBTTC------CHHHHHHHHHHS-CCCTTCCTTCHHHHHHHHHC
T ss_pred cEEeeccccccCCcccccCCCCcceecCCC------CHHHHHHHHHhC-CCCCCCCCCCcHHHHHHHHh
Confidence 88899999999999 799999765 34432 788888888763 33333333344555666554
No 40
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=99.16 E-value=3.3e-10 Score=113.66 Aligned_cols=237 Identities=16% Similarity=0.194 Sum_probs=146.4
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----C-Ccc-cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceec
Q 013441 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----T-DLE-RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----T-D~~-R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~Q 136 (443)
-|||.|||||+..++.+|..-+. |.+.++-|-| | |+. ....+....+..++.++|++++... .|.|
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~-------i~~q 82 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSV-------FWLQ 82 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSE-------EEEG
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceE-------EEEC
Confidence 47899999999999999877666 7777777777 3 321 2345666778888999999998653 6889
Q ss_pred cccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCce
Q 013441 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSL 216 (443)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~ 216 (443)
|+-.+ +.+.+- .+-|+++-.+++++-. +++++..+. .+
T Consensus 83 S~~~~-~~el~~-------~l~~~~~~~~l~r~~~----------------------~K~~~~~~~------------~~ 120 (322)
T 3tzl_A 83 SDVKE-VMELYW-------ILSQFTPMGLLERAHS----------------------YKDKVAKGL------------SA 120 (322)
T ss_dssp GGCTH-HHHHHH-------HHGGGCBHHHHHSCHH----------------------HHHHHHTTC------------CC
T ss_pred Ccchh-HHHHHH-------HHhccCcHHHHHhhhH----------------------HHHHHccCC------------CC
Confidence 99875 333322 2458888888764311 111111110 00
Q ss_pred eeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC------CCCCcE
Q 013441 217 KISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMPYF 290 (443)
Q Consensus 217 ~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg------~~~P~f 290 (443)
+=|..+|-.--+.|=...+.++|.-|.|...+--.=.-|.+.|+ ++.|.-
T Consensus 121 ------------------------~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~ 176 (322)
T 3tzl_A 121 ------------------------SHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEA 176 (322)
T ss_dssp ------------------------BHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEE
T ss_pred ------------------------chHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCchh
Confidence 01233444444444445689999999997644332233444443 356665
Q ss_pred EE---eeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCC------CCCCcccCHHHHHhccccccccC
Q 013441 291 AH---VSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGD------GTENEFFTLKQLVEKFTIERVNK 360 (443)
Q Consensus 291 ~H---lplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~------~~~~e~~s~~eli~~F~l~~v~~ 360 (443)
.| .|+|.+.+|+||||+.++ +.+.+ .|+.|...+... .++ +.+.+.-.+-++.+.|.
T Consensus 177 ~~~~~~~~l~~l~G~KMSKS~~n~I~L~d------~p~~i~~KI~~a-~td~~~~~~~~~~~~~~v~~~~~~~~------ 243 (322)
T 3tzl_A 177 RVNEEVAVVVGTDGAKMSKSYQNTIDIFS------SEKTLKKQISSI-VTDSTALEDPKDHENCNIFKIAKLFL------ 243 (322)
T ss_dssp ECCCSSCCCBCTTSSBCCGGGTCCCBSSC------CHHHHHHHHHTC-CCCCCCTTSCCCGGGCHHHHHHGGGC------
T ss_pred hhccccccccCCCCCcCCCCCCCceecCC------CHHHHHHHHHhc-cCCCccccCCCCCcchhHHHHHHHhC------
Confidence 55 689999999999999987 33322 789999888753 111 11233344445555552
Q ss_pred CCccccHHHHHHHHHHHHh-cCChhHHHHHHH
Q 013441 361 SGAIFDSTKLRWMNGQHLR-AIPSNELTKLIG 391 (443)
Q Consensus 361 ~~~~fd~~kL~~~n~~~l~-~~~~~~l~~~~~ 391 (443)
+.+++..+...|-. .+...++-+.+.
T Consensus 244 -----~~~~i~~l~~~~~~g~~~~~~~K~~la 270 (322)
T 3tzl_A 244 -----DESGQKELQIRYEKGGEGYGHFKIYLN 270 (322)
T ss_dssp -----CHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred -----ChhHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56778888888875 455544433333
No 41
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=98.77 E-value=7.7e-08 Score=98.83 Aligned_cols=192 Identities=15% Similarity=0.083 Sum_probs=118.9
Q ss_pred ceEEEeCCCCCCcCChhhHHHHH-HHHHHHHHcCCeEEEEecC-----CCc---ccCcHHHHHHHHHHHHHcCCCCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGARTAL-FNYLFARSKGGKFVLRIED-----TDL---ERSTKESEEAVLQDLSWLGLDWDEGP 125 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL-~n~l~Ar~~gG~fiLRIED-----TD~---~R~~~~~~~~I~~dL~wLGl~wDegp 125 (443)
++++=-.--|||.|||||+..++ .+|+ ....|...++-|-| +|+ .....+....+..++.++|++++...
T Consensus 73 p~~i~sG~~PTG~lHLGh~v~~~~~~~l-Q~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~ 151 (392)
T 3jxe_A 73 GFFLYTGRGPSGPMHIGHIIPFFATKWL-QEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTF 151 (392)
T ss_dssp CCEEEEEECCSSCCBHHHHHHHHHHHHH-HHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEE
T ss_pred CeEEEeccCCCCchhHHHHHHHHHHHHH-HHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceE
Confidence 44443333466999999999996 7884 34467766666666 122 23345666678888899999998753
Q ss_pred CCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCce
Q 013441 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYT 205 (443)
Q Consensus 126 ~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~ 205 (443)
.|.||+-.. |.+.+-.|- |..|-.++.++- .|.. ..
T Consensus 152 -------i~~qS~~~~-~~~~~~~l~-------~~~t~~~~~~~~----------~~~~---~~---------------- 187 (392)
T 3jxe_A 152 -------IFQNSEFTK-IYEMAIPIA-------KKINFSMAKAVF----------GFTE---QS---------------- 187 (392)
T ss_dssp -------EEETTTSTH-HHHHHHHHH-------HHSBHHHHHHHH----------CCCT---TS----------------
T ss_pred -------EEECchhHH-HHHHHHHHH-------hhCCHHHHhhhh----------ccCC---CC----------------
Confidence 689999887 555554442 444444442210 0100 00
Q ss_pred EEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccC-CcceEEecCCCCCCHHHHHHHHHHcC
Q 013441 206 YRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATM-AISHVIRAEEHLPNTLRQALIYKALG 284 (443)
Q Consensus 206 iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m-~ITHVIRG~D~l~ntp~q~~ly~aLg 284 (443)
+=|..+|-.--+.|=... .-++|.-|.|...+--.-.-+.+.+|
T Consensus 188 -----------------------------------~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n 232 (392)
T 3jxe_A 188 -----------------------------------KIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLG 232 (392)
T ss_dssp -----------------------------------BHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHHHHHHHHTGGGT
T ss_pred -----------------------------------chHHHHHHHHHHhhHHhhcCCceeecccchHHHHHHHHHHHHHcC
Confidence 001223322223322233 35788899997654433345567789
Q ss_pred CCCCcEEEeeceecCCC--ceecccCCC--CChHHHHHCCCCHHHHHHHHHH
Q 013441 285 FSMPYFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 285 ~~~P~f~Hlplil~~dg--~KLSKR~g~--~si~~~r~~G~~peai~n~l~~ 332 (443)
.+.|.-.|.|+|.+.+| +||||+.++ +.+. =.|+.|..-+..
T Consensus 233 ~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~------D~p~~I~kKI~k 278 (392)
T 3jxe_A 233 YYKTAALHSKFVPSLTSLSGKMSASKPETAIYLT------DSPEDVEKKVWK 278 (392)
T ss_dssp SCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTT------CCHHHHHHHHHT
T ss_pred CCCCeeeecccccCCCCCccccccCCCCCeeeCC------CCHHHHHHHHHh
Confidence 88999889999999999 599999976 3332 268888776654
No 42
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=98.77 E-value=1.9e-08 Score=102.79 Aligned_cols=193 Identities=18% Similarity=0.168 Sum_probs=113.3
Q ss_pred CCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc----cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 013441 62 PSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE----RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (443)
Q Consensus 62 PSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~~----R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gp 133 (443)
--|||.|||||...++.++ ...+.|...++-|-| |.+. .....+...+..++-.+||+++... .
T Consensus 77 ~~PTG~lHLGhyv~~~~~~-~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~-------i 148 (372)
T 3a04_A 77 FMPSGKFHFGHKLTVDQLI-YLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTE-------F 148 (372)
T ss_dssp ECCCSCCBHHHHHHHHHHH-HHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCE-------E
T ss_pred cCCCcHhHHHHHHHHHHHH-HHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcc-------h
Confidence 3568999999999776654 444567787777887 3322 1244556677788889999998864 6
Q ss_pred eeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 013441 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (443)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 213 (443)
|+||+...-|.+.+..+ .|..+..++++.. + ..+...+
T Consensus 149 f~qS~~~~~~~~l~~~~-------~~~~~~~~~~~~~------~----------~~~~~~~------------------- 186 (372)
T 3a04_A 149 YFQTNRGTPYFRLIQLF-------SGKVTAAEMEAIY------G----------ELTPAKM------------------- 186 (372)
T ss_dssp EEGGGSCHHHHHHHHHH-------TTSSCHHHHHHHH------S----------SCCHHHH-------------------
T ss_pred hhhccchHHHHHHHHHH-------HhhhhHHHHhhhh------h----------ccCcccc-------------------
Confidence 89998765554443332 3455666654331 0 0111111
Q ss_pred CceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC----CCCCc
Q 013441 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG----FSMPY 289 (443)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg----~~~P~ 289 (443)
.++.-+..|.++...|-...| .-+||=.|.|....--.-.-|.+.|| ++.|.
T Consensus 187 -------------~yP~lqAaDil~~~~d~~~gy-----------~a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~ 242 (372)
T 3a04_A 187 -------------MASLTQAADILHVQLDEYGGY-----------RHVVVPVGADQDPHLRLTRDLADRMAGVVELERPA 242 (372)
T ss_dssp -------------HHHHHHHHHHHGGGSGGGTCC-----------CCEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCE
T ss_pred -------------cCCcchhHHHhhhcCccccCc-----------cceecccchhhHHHHHHHHHHHHHhcCcccccChh
Confidence 000000112222222211212 34677789886432222223445565 67888
Q ss_pred EEEeeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHH
Q 013441 290 FAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 290 f~Hlplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~ 332 (443)
-.|.+++.+.+|.||||+..+.+|. .-=.|+.|.+-+..
T Consensus 243 ~~~~~~~pgldG~KmS~S~~ns~I~----l~D~p~~i~kKI~k 281 (372)
T 3a04_A 243 STYHKLQPGLDGRKMSSSRPDSTIF----LTDPPEVARNKLFR 281 (372)
T ss_dssp EEEECCCBCTTSSBCCTTSGGGSCB----TTCCHHHHHHHHHT
T ss_pred hhhhcccCCCCCCccCCCCCCcccc----cCCCHHHHHHHHhc
Confidence 8999999999999999998664331 11268888887765
No 43
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=98.71 E-value=6.1e-08 Score=99.10 Aligned_cols=252 Identities=14% Similarity=0.118 Sum_probs=146.0
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----C-Cc-ccC---cHHHH-HHHH----HHHHHcCCCCCCCCCCC
Q 013441 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----T-DL-ERS---TKESE-EAVL----QDLSWLGLDWDEGPGVG 128 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----T-D~-~R~---~~~~~-~~I~----~dL~wLGl~wDegp~~g 128 (443)
-|||.|||||...++.+|..-+..|.+.++-|-| | |+ .+. +.+.. ..+. .++..+|++++...
T Consensus 41 ~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~--- 117 (375)
T 2cyc_A 41 EISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVE--- 117 (375)
T ss_dssp CCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSE---
T ss_pred CCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccceE---
Confidence 4569999999777999998888888888888888 3 43 122 22333 4444 78889999987643
Q ss_pred CCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEE
Q 013441 129 GDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRF 208 (443)
Q Consensus 129 g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~ 208 (443)
.+.||+-.... .+..-+++ +-|.++-.++.+. +.|
T Consensus 118 ----i~~qS~~~~~~-~~~~~~~~----~~~~~~~~~m~~~----------~~~-------------------------- 152 (375)
T 2cyc_A 118 ----FVLASEILEKG-DYWQTVID----ISKNVTLSRVMRS----------ITI-------------------------- 152 (375)
T ss_dssp ----EEETHHHHTBH-HHHHHHHH----HHTTSBHHHHHHT----------GGG--------------------------
T ss_pred ----EEEcchhhhhh-HHHHHHHH----HhceeEHHHHhcc----------chh--------------------------
Confidence 68899854321 22222222 1223333333211 011
Q ss_pred ecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCC---
Q 013441 209 RVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGF--- 285 (443)
Q Consensus 209 k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~--- 285 (443)
+++.. +|.+ +=|..+|-.--+.|=...+.++|+-|.|...+--.=..+.+.+|.
T Consensus 153 --------------k~r~~------~~~i---~~g~f~YP~LQaaDil~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~ 209 (375)
T 2cyc_A 153 --------------MGRQM------GEAI---DFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPI 209 (375)
T ss_dssp --------------GTCCC------CTTC---BTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGCSSSCE
T ss_pred --------------hhhcc------CCCC---ChHHHHHHHHHHHHHHHhCCCeecccchHHHHHHHHHHHHHHhCCccc
Confidence 00000 0000 123445555555555567899999999976544333455566776
Q ss_pred -----C-CCcEEEeeceecCCC------------------ceecccC-C-CCChHHHHHCCCCHHHHHHHHHHhCCCCCC
Q 013441 286 -----S-MPYFAHVSLILAPDR------------------SKLSKRH-G-ATSVGQFREMGYLPQAMVNYLALLGWGDGT 339 (443)
Q Consensus 286 -----~-~P~f~Hlplil~~dg------------------~KLSKR~-g-~~si~~~r~~G~~peai~n~l~~LG~~~~~ 339 (443)
. .|...|.|+|.+.+| +||||+. + ++.+.+ .|+.|..++... .+++.
T Consensus 210 ~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d------~p~~i~~KI~~A-~t~~~ 282 (375)
T 2cyc_A 210 VHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHD------SPEEIRQKLRKA-FCPAR 282 (375)
T ss_dssp EETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTC------CHHHHHHHHHHS-CCCTT
T ss_pred ccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCC------CHHHHHHHHHHh-cCCCC
Confidence 3 677789999999998 8999998 3 345533 699999998763 33332
Q ss_pred CCcccCHHHHHhccccccccC---------CCccccHHHHHHHHHHHHhc-CChhHHHHHHHH
Q 013441 340 ENEFFTLKQLVEKFTIERVNK---------SGAIFDSTKLRWMNGQHLRA-IPSNELTKLIGE 392 (443)
Q Consensus 340 ~~e~~s~~eli~~F~l~~v~~---------~~~~fd~~kL~~~n~~~l~~-~~~~~l~~~~~~ 392 (443)
..+.-...++++.|.+..-.. .+..++.+.+..+...|-.. +...++-+.+..
T Consensus 283 ~~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~ 345 (375)
T 2cyc_A 283 EVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAE 345 (375)
T ss_dssp CCSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHhcCCCCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 233333455566664332111 11122345566677777653 555554444433
No 44
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=98.70 E-value=1.1e-07 Score=98.84 Aligned_cols=205 Identities=12% Similarity=0.106 Sum_probs=112.1
Q ss_pred ceEEEeCCCCC-CcCChhhHHHHH-HHHHHHHHcCCeEEEEecC----C-Cc---ccCcHHHHHHHHHHHHHcCCCCCCC
Q 013441 55 QVRVRFAPSPT-GNLHVGGARTAL-FNYLFARSKGGKFVLRIED----T-DL---ERSTKESEEAVLQDLSWLGLDWDEG 124 (443)
Q Consensus 55 ~vr~RFAPSPT-G~LHiG~~rtAL-~n~l~Ar~~gG~fiLRIED----T-D~---~R~~~~~~~~I~~dL~wLGl~wDeg 124 (443)
++++=-.--|| |.|||||+..++ .+|+. +.+|.+.++-|-| + |+ ...+.+....++.++..+|++++..
T Consensus 102 ~~~vy~G~dPTag~LHLGh~v~~~~l~~lQ-~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k~ 180 (432)
T 2ip1_A 102 PFFLYTGRGPSSDSMHLGHMIPFVFTKWLQ-EVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNT 180 (432)
T ss_dssp CCEEEEEECCCSSCCBGGGHHHHHHHHHHH-HHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred CeEEEEeecCCCCCccHHHHHHHHHHHHHH-HHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCce
Confidence 44444444678 899999999887 68854 3467776666677 2 22 1234566667788888899998754
Q ss_pred CCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCc
Q 013441 125 PGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPY 204 (443)
Q Consensus 125 p~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~ 204 (443)
. .|.||+-.. ..+.+-+.. +.+ .++.+++.+++ |.
T Consensus 181 ~-------i~~nSd~~~--~~~~~~~~~-------------v~r-------------------m~~~~~~k~r~--~~-- 215 (432)
T 2ip1_A 181 F-------IFSDLQYMG--GAFYETVVR-------------VSR-------------------QITGSTAKAVF--GF-- 215 (432)
T ss_dssp E-------EEEHHHHCS--HHHHHHHHH-------------HHT-------------------SCCHHHHHHTT--CC--
T ss_pred E-------EEeCchhhh--hhHHHHHHH-------------HHh-------------------hhcHHHHHHHh--CC--
Confidence 2 688998652 122222221 111 11222222110 00
Q ss_pred eEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC
Q 013441 205 TYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG 284 (443)
Q Consensus 205 ~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg 284 (443)
. ..+ -.|.+.++.-+.-|++.++.|-.. .....+.++|.-|.|...|--.=.-|.+.+|
T Consensus 216 -------~-~~~-----s~g~f~YPlLQAaDil~l~~d~~~--------~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~ 274 (432)
T 2ip1_A 216 -------N-DSD-----CIGKFHFASIQIATAFPSSFPNVL--------GLPDKTPCLIPCAIDQDPYFRVCRDVADKLK 274 (432)
T ss_dssp -------C-TTS-----CHHHHHTHHHHHHTTSGGGCTTTT--------CCCTTCCEEEEEEGGGHHHHHHHHHHHHHHT
T ss_pred -------C-CCC-----chhhhhHHHHHHHHHHHhccchhh--------cccCCCceEEEeccCcHHHHHHHHHHHHHhC
Confidence 0 000 012222221111122221111000 0001368899999998776554456678899
Q ss_pred CCCCcEEEeeceecCCC--ceecccCCC--CChHHHHHCCCCHHHHHHHHHH
Q 013441 285 FSMPYFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 285 ~~~P~f~Hlplil~~dg--~KLSKR~g~--~si~~~r~~G~~peai~n~l~~ 332 (443)
++.|...|.|+|.+.+| +||||+.++ +.|.+ .|+.|.+-+..
T Consensus 275 ~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d------~p~~i~~KI~~ 320 (432)
T 2ip1_A 275 YSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTD------TPKQIQKKINK 320 (432)
T ss_dssp SCCCEEEEECCCCCTTC--------CGGGCCBTTC------CHHHHHHHHHH
T ss_pred CCCceeeccccccCCCCCccccCCCCCCCeEeccC------CHHHHHHHhhh
Confidence 98898899999999999 899999876 34432 68888887765
No 45
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=98.70 E-value=6.2e-08 Score=99.33 Aligned_cols=200 Identities=12% Similarity=0.060 Sum_probs=117.0
Q ss_pred CceEEEeCCCCCCcCChhhHHHH-HHHHHHHHHcCCeEEEEecCCC-------cccCcHHHHHHHHHHHHHcCCCCCCCC
Q 013441 54 GQVRVRFAPSPTGNLHVGGARTA-LFNYLFARSKGGKFVLRIEDTD-------LERSTKESEEAVLQDLSWLGLDWDEGP 125 (443)
Q Consensus 54 ~~vr~RFAPSPTG~LHiG~~rtA-L~n~l~Ar~~gG~fiLRIEDTD-------~~R~~~~~~~~I~~dL~wLGl~wDegp 125 (443)
.++++=-.--|||.|||||+..+ +.+|+ -+..|..+++-|.|.. ....+.+.....+.++-.+|++++...
T Consensus 81 ~~~~vysG~~PTG~lHLGh~v~~~~~~~l-Q~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~ 159 (386)
T 3hzr_A 81 KPTFIFIQKYPQKEVALEEYITLEFARYL-QDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTF 159 (386)
T ss_dssp CCEEEEEEECCCSSCBGGGHHHHHHHHHH-HHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEE
T ss_pred CCeEEEeccCCCCCccHHHHHHHHHHHHH-HHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceE
Confidence 45555555678899999999999 88994 3445777777787721 112244555677788889999987642
Q ss_pred CCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCce
Q 013441 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYT 205 (443)
Q Consensus 126 ~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~ 205 (443)
.|.||+-...|... --+|.++ ..| .+..+ ..|
T Consensus 160 -------i~~qS~~~~~~~~~----------------~~~l~r~----------~t~---------~~~~~--~~~---- 191 (386)
T 3hzr_A 160 -------IYTDYQYFGKMYRT----------------ISLVEKA----------TAY---------NVVQP--FFN---- 191 (386)
T ss_dssp -------EEEHHHHHHHHHHH----------------HHHHHHH----------CBH---------HHHTT--TSC----
T ss_pred -------EEeccHHHHHHHHH----------------HHHHHhh----------ccH---------HHHHH--HhC----
Confidence 57888876522111 1222221 011 00000 000
Q ss_pred EEEecCCCCceeeee-cccceeeecCCCCCCeEEEecCCccccch----hhhhhcccC-C-cceEEecCCCCCCHHHHHH
Q 013441 206 YRFRVPKGGSLKISD-LIRGEVSWNLDTLGDFVIMRSNGQPVYNF----CVTVDDATM-A-ISHVIRAEEHLPNTLRQAL 278 (443)
Q Consensus 206 iR~k~~~~~~~~~~D-~v~G~i~~~~~~~~D~VL~RsDG~PtY~f----A~vVDD~~m-~-ITHVIRG~D~l~ntp~q~~ 278 (443)
+.+ .-.|.+. ||.-+= +...+|.+. + -++|--|.|-..+--.-.-
T Consensus 192 ------------~~~~~~~g~f~----------------YP~LQaaD~~~~~~pdil~~~~a~~VpvG~DQ~~hl~l~Rd 243 (386)
T 3hzr_A 192 ------------FEYSDNIGKLA----------------SPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQ 243 (386)
T ss_dssp ------------CCSSSBHHHHH----------------HHHHHHHTTSGGGCTTTCSSCCEEEEEEEGGGHHHHHHHHH
T ss_pred ------------CCCCCchhhHh----------------hHHHHHHHHhhhcchHhhCCCCccccccccchHHHHHHHHH
Confidence 000 0011111 121111 111235443 2 4566679997655444456
Q ss_pred HHHHcCCCCCcEEEeeceecCCCc-eecccC-C-CCChHHHHHCCCCHHHHHHHHHHhCCC
Q 013441 279 IYKALGFSMPYFAHVSLILAPDRS-KLSKRH-G-ATSVGQFREMGYLPQAMVNYLALLGWG 336 (443)
Q Consensus 279 ly~aLg~~~P~f~Hlplil~~dg~-KLSKR~-g-~~si~~~r~~G~~peai~n~l~~LG~~ 336 (443)
+.+.+|.+.|...|.|+|.+.+|. ||||++ + .+.+.+ .|+.|..-+...-.+
T Consensus 244 la~r~n~~~p~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D------~p~~i~kKI~k~A~t 298 (386)
T 3hzr_A 244 IATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNSILLSD------NAKQVERKINKLAFS 298 (386)
T ss_dssp HHHHHTCCCCEEEEECCCCCTTCTTCCCCCCTTTSCBTTC------CHHHHHHHHHHTSCC
T ss_pred HHHHcCCCCceEeecCeeeCCCCCCccCcCCCCCeeecCC------CHHHHHHHHHHhccC
Confidence 678899988988899999999995 999994 3 344433 788998888775333
No 46
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=98.67 E-value=2.1e-07 Score=97.83 Aligned_cols=203 Identities=12% Similarity=0.115 Sum_probs=119.3
Q ss_pred ceEEEeCCCCC-CcCChhhHHHHH-HHHHHHHHcCCeEEEEecC-C----C--cccCcHHHHHHHHHHHHHcCCCCCCCC
Q 013441 55 QVRVRFAPSPT-GNLHVGGARTAL-FNYLFARSKGGKFVLRIED-T----D--LERSTKESEEAVLQDLSWLGLDWDEGP 125 (443)
Q Consensus 55 ~vr~RFAPSPT-G~LHiG~~rtAL-~n~l~Ar~~gG~fiLRIED-T----D--~~R~~~~~~~~I~~dL~wLGl~wDegp 125 (443)
++++=-.--|| |.|||||+..++ .+|+. +.+|.+.++-|-| | | ....+.+....++.++..+|++++...
T Consensus 155 ~~~vy~G~dPTag~LHLGh~v~~~~~~~lQ-~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~ 233 (477)
T 1r6t_A 155 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQ-DVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTF 233 (477)
T ss_dssp CEEEEEEECCCTTCCBGGGHHHHHHHHHHH-HHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEE
T ss_pred CcEEEEcccCCCCCccHHHHHHHHHHHHHH-HHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 55554555678 899999999988 67754 3467776666665 2 1 122355666677888888999987643
Q ss_pred CCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCce
Q 013441 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYT 205 (443)
Q Consensus 126 ~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~ 205 (443)
.|.||+-.....++.+... +|.++ .+..++.+++ |.
T Consensus 234 -------i~~nsd~~~~l~~~~~~~~-------------~l~r~-------------------~t~~~~k~r~--~~--- 269 (477)
T 1r6t_A 234 -------IFSDLDYMGMSSGFYKNVV-------------KIQKH-------------------VTFNQVKGIF--GF--- 269 (477)
T ss_dssp -------EEEHHHHGGGCTTHHHHHH-------------HHHHT-------------------CBHHHHHHHH--CC---
T ss_pred -------EEechhhhcccHHHHHHHH-------------HHHhh-------------------ccHHHHHHHh--CC---
Confidence 5789886530001111111 22111 1223332221 10
Q ss_pred EEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhccc----CCcceEEecCCCCCCHHHHHHHHH
Q 013441 206 YRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDAT----MAISHVIRAEEHLPNTLRQALIYK 281 (443)
Q Consensus 206 iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~----m~ITHVIRG~D~l~ntp~q~~ly~ 281 (443)
. ..+ -.|.+.++.-+.-|++. ..+|... .+.++|..|.|...|.-.-.-|.+
T Consensus 270 ------~-~~~-----s~gef~YPlLQAaDil~------------l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~ 325 (477)
T 1r6t_A 270 ------T-DSD-----CIGKISFPAIQAAPSFS------------NSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAP 325 (477)
T ss_dssp ------C-TTS-----BHHHHHHHHHHHGGGSG------------GGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGG
T ss_pred ------C-CCC-----ChhhhhhHHHHHHHHHH------------hccchhhccccCCceeEeccccHHHHHHHHHHHHH
Confidence 0 000 11222222111112111 1122222 356888899998877666666778
Q ss_pred HcCCCCCcEEEeeceecCCC--ceecccCCC--CChHHHHHCCCCHHHHHHHHHH
Q 013441 282 ALGFSMPYFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 282 aLg~~~P~f~Hlplil~~dg--~KLSKR~g~--~si~~~r~~G~~peai~n~l~~ 332 (443)
.+|++.|...|.|+|.+.+| +||||+.++ +.|.+ .|+.|.+-+..
T Consensus 326 r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d------~p~~i~kKi~~ 374 (477)
T 1r6t_A 326 RIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTD------TAKQIKTKVNK 374 (477)
T ss_dssp GGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTC------CHHHHHHHHHH
T ss_pred HhCCCCceeeecccccCCCCCccccCCCCCCCceeecC------CHHHHHHHhcc
Confidence 89998898899999999999 899999887 34432 78888887766
No 47
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=98.60 E-value=2.6e-07 Score=96.04 Aligned_cols=199 Identities=22% Similarity=0.227 Sum_probs=121.7
Q ss_pred CceEEEeCCCCCCc-CChhhHHHHHHHHHHHHHcCCeEEEEecC----C-Ccc-----c------CcHHHHHHHHHHHHH
Q 013441 54 GQVRVRFAPSPTGN-LHVGGARTALFNYLFARSKGGKFVLRIED----T-DLE-----R------STKESEEAVLQDLSW 116 (443)
Q Consensus 54 ~~vr~RFAPSPTG~-LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----T-D~~-----R------~~~~~~~~I~~dL~w 116 (443)
.++++=-.--|||. |||||+. ++.+|..-+..|.+.++-|-| | |+. | .+.+....++..+ +
T Consensus 36 ~~~~vy~G~dPTg~sLHlGh~v-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql-~ 113 (432)
T 1h3f_A 36 RPLTVKLGADPTRPDLHLGHAV-VLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQA-G 113 (432)
T ss_dssp SCCEEEEEECTTCCSCBHHHHH-HHHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHH-T
T ss_pred CCcEEEEcccCCCCCCchhhHH-HHHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHH-H
Confidence 34454445567884 9999999 788888888888888888888 2 442 2 1233334444433 2
Q ss_pred cCCC--CCCCCCCCCCCCceeccccHHH--HHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHH
Q 013441 117 LGLD--WDEGPGVGGDYGPYRQSERNSL--YKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDA 192 (443)
Q Consensus 117 LGl~--wDegp~~gg~~gpy~QSer~~~--Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~ 192 (443)
.||+ ++.. -.+.||+-... |.+ +++ +.|..|-.++. ..+
T Consensus 114 ~~ld~~p~k~-------~i~~nSd~~~~~~~~~----~l~----l~~~~tv~~ml----------------------~~~ 156 (432)
T 1h3f_A 114 KILRQEPHLF-------ELRYNSEWLEGLTFKE----VVR----LTSLMTVAQML----------------------ERE 156 (432)
T ss_dssp TTSCCCTTTE-------EEEETHHHHTTCBHHH----HHH----HHTTSBHHHHT----------------------TSH
T ss_pred HHhcCCCCce-------EEEECCcccccCcHHH----HHH----HhCcCcHHHHH----------------------hhh
Confidence 7887 4432 26788875421 111 121 11222322211 011
Q ss_pred HHHHHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCC
Q 013441 193 EVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPN 272 (443)
Q Consensus 193 e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~n 272 (443)
.+.+++..+. .+ +-|..+|-+--+.|=...+.++++.|.|...|
T Consensus 157 ~~k~r~~~~~------------~i------------------------s~~ef~YPlLQaaDil~l~~~l~~gG~DQ~~n 200 (432)
T 1h3f_A 157 DFKKRYEAGI------------PI------------------------SLHELLYPFAQAYDSVAIRADVEMGGTDQRFN 200 (432)
T ss_dssp HHHHHHHTTC------------CC------------------------BGGGGTHHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred hHHHHhhcCC------------CC------------------------CccccchhhHHhhhhhhcCccEEEechHHHHH
Confidence 2222222111 00 11234555544555555679999999999888
Q ss_pred HHHHHHHHHHcCCCCCcEEEeeceecCCCc-eecccCCC-CChHHHHHCCCCHHHHHHHHHHh
Q 013441 273 TLRQALIYKALGFSMPYFAHVSLILAPDRS-KLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 273 tp~q~~ly~aLg~~~P~f~Hlplil~~dg~-KLSKR~g~-~si~~~r~~G~~peai~n~l~~L 333 (443)
.-.-..|.+.+|..+|...|.|+|.+.+|+ ||||+.++ +.+.+ .|+.+..++...
T Consensus 201 i~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d------sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 201 LLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE------PPEAMFKKLMRV 257 (432)
T ss_dssp HHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS------CHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCCeeCCCC------CHHHHHHHHhCC
Confidence 777778889999887877899999999996 99999887 44543 899999888753
No 48
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=98.59 E-value=7.1e-07 Score=91.71 Aligned_cols=67 Identities=16% Similarity=0.084 Sum_probs=42.3
Q ss_pred ceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCC--ceecccCCC--CChHHHHHCCCCHHHHHHHHHHh
Q 013441 261 SHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 261 THVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg--~KLSKR~g~--~si~~~r~~G~~peai~n~l~~L 333 (443)
++|..|.|...+--.-.-+.+.+|.+.|...|.|+|.+.+| +||||+.++ +.+. =.|+.|.+-+...
T Consensus 222 ~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~------D~p~~i~kKI~k~ 292 (393)
T 3hv0_A 222 CLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVN------DNEESIRNKIMKY 292 (393)
T ss_dssp EEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEECCCCC-------------CCCCBTT------CCHHHHHHHHHHH
T ss_pred eecccccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEecc------CCHHHHHHHHHhh
Confidence 57889999865544444566778999999899999999999 799999976 3443 2789998888764
No 49
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=98.55 E-value=1.5e-07 Score=95.38 Aligned_cols=195 Identities=15% Similarity=0.171 Sum_probs=117.6
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC-----CCc----ccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 013441 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED-----TDL----ERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED-----TD~----~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gp 133 (443)
-|||.|||||...++.+|..-+..|.+.++-|-| +|+ ...+.+..+.+.+++..+|++++... .
T Consensus 48 ~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~-------i 120 (348)
T 2j5b_A 48 EPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTR-------F 120 (348)
T ss_dssp CCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGEE-------E
T ss_pred CCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccceE-------E
Confidence 4569999999878888888888888888888888 343 22345666778888889999987542 5
Q ss_pred eeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 013441 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (443)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 213 (443)
+.||+-...+..+..-++ |....-.+.++.+ ...+.
T Consensus 121 ~~qs~~~~~~~~~~~~~~-------~v~~~~~~~~m~~-------~~~~~------------------------------ 156 (348)
T 2j5b_A 121 IWASEFIASNPSYIERML-------DIAEFSTISRVKR-------CCQIM------------------------------ 156 (348)
T ss_dssp EEHHHHHHHCHHHHHHHH-------HHHHHHHHHHHTC------------------------------------------
T ss_pred EECCHhhhhhhHHHHHHH-------HHHhheeHHHHHh-------hhhhh------------------------------
Confidence 789884211111111111 1111112222210 00010
Q ss_pred CceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccC---CcceEEecCCCCCCHHHHHHHHHHcCCCCCcE
Q 013441 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATM---AISHVIRAEEHLPNTLRQALIYKALGFSMPYF 290 (443)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m---~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f 290 (443)
|+.. +|.+ +=|..+|-.--+.|=... +.++|+-|.|...+--.=..+.+.+|...|..
T Consensus 157 ----------~r~~------~~~i---~~g~f~YP~lQaaDil~~~~~~~~~~~~G~DQ~~~i~l~Rdia~r~~~~~p~~ 217 (348)
T 2j5b_A 157 ----------GRNE------SDCL---KASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGLKIPIS 217 (348)
T ss_dssp -------------------------------CCHHHHHHHHHHHSSTTCCSEECCBGGGHHHHHHHHHHHHHTTCCCCEE
T ss_pred ----------hhhc------cCCc---ChHHHhhHHHHHHHHHHHhcCCCcEEEeccChHHHHHHHHHHHHHhCCCCcee
Confidence 0000 0000 123344544444444444 78999999998655444445668899988998
Q ss_pred EEeeceecC-CC-ceecccCC--CCChHHHHHCCCCHHHHHHHHHHh
Q 013441 291 AHVSLILAP-DR-SKLSKRHG--ATSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 291 ~Hlplil~~-dg-~KLSKR~g--~~si~~~r~~G~~peai~n~l~~L 333 (443)
.|.|+|.+. +| +||||+.+ ++.+.+ .|+.|.+-+...
T Consensus 218 ~~~~~l~gL~dg~~KMSKS~~~~~I~L~d------~p~~i~kKI~ka 258 (348)
T 2j5b_A 218 LSHHMLMSLSGPKKKMSKSDPQGAIFMDD------TEQEVSEKISRA 258 (348)
T ss_dssp EEBCCCCCTTCSSCCCSTTCGGGSCBTTC------CHHHHHHHHHHS
T ss_pred ecCccccCCCCcccccccCCCCCeEeecC------CHHHHHHHHhcc
Confidence 999999999 67 69999983 355533 788888888763
No 50
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=98.51 E-value=2.7e-07 Score=96.23 Aligned_cols=240 Identities=15% Similarity=0.117 Sum_probs=121.1
Q ss_pred CceEEEeCCCCC-CcCChhhHHHHH-HHHHHHHHcCCeEEEEecCC-----C---cccCcHHHHHHHHHHHHHcCCCCCC
Q 013441 54 GQVRVRFAPSPT-GNLHVGGARTAL-FNYLFARSKGGKFVLRIEDT-----D---LERSTKESEEAVLQDLSWLGLDWDE 123 (443)
Q Consensus 54 ~~vr~RFAPSPT-G~LHiG~~rtAL-~n~l~Ar~~gG~fiLRIEDT-----D---~~R~~~~~~~~I~~dL~wLGl~wDe 123 (443)
.++++=-.=-|| |.|||||+..++ .+|+. +..|..+++-|-|- . ....+.+....+++++..+|++++.
T Consensus 90 ~p~~vytG~dPTagsLHLGH~v~~~~l~~lQ-~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpek 168 (451)
T 3foc_A 90 HPIYIYTGRGPSSGALHLGHLLPFIFTKYLQ-DAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDK 168 (451)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHHHH-HHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCeEEEecCCCCCCCccHHHHHHHHHHHHHH-HccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 355555555678 899999999998 88944 44577788888873 1 1122455566777888888999865
Q ss_pred CCCCCCCCCceeccccHH--HHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHh--
Q 013441 124 GPGVGGDYGPYRQSERNS--LYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELE-- 199 (443)
Q Consensus 124 gp~~gg~~gpy~QSer~~--~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~-- 199 (443)
.. .|.||+-.. .|.+.+-.|-+ ..|-.++.+.- + +. ..++-.++-=.+.
T Consensus 169 t~-------i~~nSd~~~~~~~~~~l~~L~r-------~~Tv~~m~~~~------~----f~---~~is~gef~YPlLQA 221 (451)
T 3foc_A 169 TF-------IFINSQYLSLKNRYRFSCLVDR-------MLPISQLRASF------G----FS---NDANVGYAAFPPKQM 221 (451)
T ss_dssp EE-------EEEHHHHTTSTTHHHHHHHHHH-------TCCHHHHHHHH------C----CC---SSSCHHHHTCHHHHH
T ss_pred eE-------EEeCchhhcchhHHHHHHHHHh-------hCCHHHHHhhc------c----cC---CCCchHHHhhHHHHH
Confidence 32 578888653 34444333321 12333332211 1 10 0122222210110
Q ss_pred --------cCCCceEEEecCCC--Cceeeeecccceeee----cCCCCCCeEEEecCCccccchhhhhhcccCCcceEEe
Q 013441 200 --------RGTPYTYRFRVPKG--GSLKISDLIRGEVSW----NLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIR 265 (443)
Q Consensus 200 --------~g~~~~iR~k~~~~--~~~~~~D~v~G~i~~----~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIR 265 (443)
.|-++++ +|.. ......+ + -+++ ..+.-.|.+|.++|-.|.- |- -..|..-.-++|.-
T Consensus 222 aDil~~~~d~~~~~~---vp~~~d~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~-~~~~~~~~~~~VPv 293 (451)
T 3foc_A 222 LPVYSTYFDGLPFTR---VPLPVGTGNEDAA--D-AVSTKKASKKTPKKDAVLSPVHVVEEL-FP-DSKRYQKAMCLIAS 293 (451)
T ss_dssp GGGSGGGGTTSGGGC---CBCC----------------------------CCCCHHHHHHHH-CG-GGGGBCCCEEEEEE
T ss_pred HHHHHhhcCCCCccc---cccccccccchhh--h-hhhhhhccccccchhhhhhhcccchhh-cc-cccccccccceeee
Confidence 1211111 2210 0000000 0 0111 0111234444444411100 00 00011112235778
Q ss_pred cCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCc--eecccCCCCChHHHHHCCCCHHHHHHHHHHh
Q 013441 266 AEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRS--KLSKRHGATSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 266 G~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~--KLSKR~g~~si~~~r~~G~~peai~n~l~~L 333 (443)
|.|...+--.-..+.+.||.+.|...|.|+|.+.+|. ||||+.++..|. .-=.|+.|..-+...
T Consensus 294 G~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~----l~D~p~~I~kKI~k~ 359 (451)
T 3foc_A 294 GIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIY----LTDTPAQIKNKINRY 359 (451)
T ss_dssp CTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCB----TTCCHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeee----ecCCHHHHHHHHhhh
Confidence 9997544333334556789989998899999999985 999999763221 123788888888774
No 51
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=98.51 E-value=4.1e-07 Score=94.49 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=73.7
Q ss_pred CcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCC
Q 013441 259 AISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDG 338 (443)
Q Consensus 259 ~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~ 338 (443)
+.++++-|.|...|--.-..|.+.+|..+|.-.+.|+|.+.+|+||||+.++.+| ++-+.-..|+.+..++... .
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI-~L~d~~tsp~~i~qki~~~--~-- 261 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSL-WLDPQMTSPYAWYQYFVNT--A-- 261 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBC-BSSTTTSCHHHHHHHHHTC--C--
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeE-EccCCCCCHHHHHHHHhcC--C--
Confidence 8999999999988766666777888887777778999999999999999987222 1112234788888887652 1
Q ss_pred CCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhc
Q 013441 339 TENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRA 380 (443)
Q Consensus 339 ~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~ 380 (443)
+. .+..+++.|.. ++.+++..+..+|-..
T Consensus 262 -D~---~v~~~l~l~t~---------~~~~ei~~l~~~~~~g 290 (432)
T 2jan_A 262 -DA---DVIRYLRWFTF---------LSADELAELEQATAQR 290 (432)
T ss_dssp -HH---HHHHHHHHHSC---------CCHHHHHHHHHHHHHC
T ss_pred -ch---hHHHHHHHHHc---------CChHHHHHHHHHHhhc
Confidence 11 13455555543 4667777777777643
No 52
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=98.46 E-value=1.6e-06 Score=89.44 Aligned_cols=194 Identities=18% Similarity=0.102 Sum_probs=116.2
Q ss_pred CceEEEeCCCCCC-cCChhhHHHH-HHHHHHHHHcCCeEEEEecCC----Ccc---cCcHHHHHHHHHHHHHcCCCCCCC
Q 013441 54 GQVRVRFAPSPTG-NLHVGGARTA-LFNYLFARSKGGKFVLRIEDT----DLE---RSTKESEEAVLQDLSWLGLDWDEG 124 (443)
Q Consensus 54 ~~vr~RFAPSPTG-~LHiG~~rtA-L~n~l~Ar~~gG~fiLRIEDT----D~~---R~~~~~~~~I~~dL~wLGl~wDeg 124 (443)
.++++=-.=-||| .|||||+..+ +.+|+ .+..|..+++-|-|. +.+ ..+.+....++.++..+|++++..
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~l-Q~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~ 178 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKYM-QDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLT 178 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHHHHH-HHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHHHHH-HHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 4566655667888 8999999998 78884 445577788878873 111 224556667888888999998753
Q ss_pred CCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCc
Q 013441 125 PGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPY 204 (443)
Q Consensus 125 p~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~ 204 (443)
. .|.||+-.. .|+..--+|.++ .+-.+..+.. |.
T Consensus 179 ~-------i~~qs~~~~----------------~~~~~~~~L~r~-------------------~t~~~~~~~~--g~-- 212 (406)
T 3tze_A 179 Y-------IFSNVEASH----------------HFEENILKISKT-------------------INLNEAIKVF--GF-- 212 (406)
T ss_dssp E-------EEEHHHHGG----------------GGHHHHHHHHHT-------------------CBHHHHHHHH--CC--
T ss_pred E-------EEeccHhHH----------------HHHHHHHHHHhh-------------------CCHHHHHHhh--CC--
Confidence 2 567776553 121111122111 1112221111 10
Q ss_pred eEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhc-------cc-CCcceEEecCCCCCCHHHH
Q 013441 205 TYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDD-------AT-MAISHVIRAEEHLPNTLRQ 276 (443)
Q Consensus 205 ~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD-------~~-m~ITHVIRG~D~l~ntp~q 276 (443)
+.. .-.|.+ +|-+--+.|= .+ .+.++|..|.|...+--.=
T Consensus 213 --------~~~-----~s~g~f-------------------~YPlLQaaD~~~~~~p~il~~~a~lvpvG~DQ~~~i~l~ 260 (406)
T 3tze_A 213 --------DMS-----SNIGQV-------------------GFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLA 260 (406)
T ss_dssp --------CTT-----SBHHHH-------------------HHHHHHHGGGSGGGSTTSCTTCEEEEEEEGGGHHHHHHH
T ss_pred --------CCC-----Ccchhh-------------------hhHHHhhhhhhccchHHhccCCCeEEeeccchHHHHHHH
Confidence 000 001222 2211112210 11 2567888999986554444
Q ss_pred HHHHHHcCCCCCcEEEeeceecCCC--ceecccCC--CCChHHHHHCCCCHHHHHHHHHH
Q 013441 277 ALIYKALGFSMPYFAHVSLILAPDR--SKLSKRHG--ATSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 277 ~~ly~aLg~~~P~f~Hlplil~~dg--~KLSKR~g--~~si~~~r~~G~~peai~n~l~~ 332 (443)
.-+.+.+|.+.|...|.|+|.+.+| +||||+.+ ++.+.+ .|+.|.+-+..
T Consensus 261 Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D------~p~~I~kKI~k 314 (406)
T 3tze_A 261 RDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDD------AQDTIRKKIIA 314 (406)
T ss_dssp HHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTC------CHHHHHHHHHH
T ss_pred HHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCC------CHHHHHHHHHh
Confidence 4567889999999889999999999 69999983 345532 78888887766
No 53
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=98.45 E-value=1.5e-06 Score=90.44 Aligned_cols=203 Identities=12% Similarity=0.092 Sum_probs=115.8
Q ss_pred CceEEEeCCCCC-CcCChhhHHHHH-HHHHHHHHcCCeEEEEecC-C----C--cccCcHHHHHHHHHHHHHcCCCCCCC
Q 013441 54 GQVRVRFAPSPT-GNLHVGGARTAL-FNYLFARSKGGKFVLRIED-T----D--LERSTKESEEAVLQDLSWLGLDWDEG 124 (443)
Q Consensus 54 ~~vr~RFAPSPT-G~LHiG~~rtAL-~n~l~Ar~~gG~fiLRIED-T----D--~~R~~~~~~~~I~~dL~wLGl~wDeg 124 (443)
.++++=-.--|| |.|||||+..++ .+|+. +.+|.+.++-|-| | | ....+.+....+..++..+|++++..
T Consensus 107 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~lQ-~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt 185 (437)
T 1r6u_A 107 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQ-DVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKT 185 (437)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHHHH-HHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHHHH-HHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 355555555678 899999999987 67754 3467776666666 2 2 12234556666788888899998754
Q ss_pred CCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCc
Q 013441 125 PGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPY 204 (443)
Q Consensus 125 p~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~ 204 (443)
. .|.||+-.....++.+... ++.++ ++.+++.+++..+
T Consensus 186 ~-------i~~nSd~~~~l~~~~~l~~-------------~v~rm-------------------~~~~~~k~r~~~~--- 223 (437)
T 1r6u_A 186 F-------IFSDLDYMGMSSGFYKNVV-------------KIQKH-------------------VTFNQVKGIFGFT--- 223 (437)
T ss_dssp E-------EEEHHHHGGGCTTHHHHHH-------------HHHHT-------------------CBHHHHHHHHCCC---
T ss_pred E-------EEechhhhhhHHHHHHHHH-------------HHHhh-------------------ccHHHHHHHhCCC---
Confidence 2 5788886531001111110 22211 2223333222100
Q ss_pred eEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhccc-----CCcceEEecCCCCCCHHHHHHH
Q 013441 205 TYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDAT-----MAISHVIRAEEHLPNTLRQALI 279 (443)
Q Consensus 205 ~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~-----m~ITHVIRG~D~l~ntp~q~~l 279 (443)
..+ -.|.+.++.-+.-|++.+.. |.. .+-++|.-|.|...|--.=.-|
T Consensus 224 ---------~~~-----s~gef~YPlLQAaDil~l~~-------------d~~~g~~~~~~~lVpvG~DQ~~~i~l~Rdl 276 (437)
T 1r6u_A 224 ---------DSD-----CIGKISFPAIQAAPSFSNSF-------------PQIFRDRTDIQCLIPCAIDQDPYFRMTRDV 276 (437)
T ss_dssp ---------TTS-----BHHHHHHHHHHHGGGSGGGC-------------HHHHTTCCCCEEEEEEEGGGHHHHHHHHHH
T ss_pred ---------CCC-----chHhHHHHHHHHHHHHHhhc-------------chhcccccCCceEEEeehhhHHHHHHHHHH
Confidence 000 01222222111112221110 111 2346777899976654444455
Q ss_pred HHHcCCCCCcEEEeeceecCCC--ceecccCCC--CChHHHHHCCCCHHHHHHHHHH
Q 013441 280 YKALGFSMPYFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 280 y~aLg~~~P~f~Hlplil~~dg--~KLSKR~g~--~si~~~r~~G~~peai~n~l~~ 332 (443)
.+.+|++.|...|.|+|.+.+| +||||+.++ +.|.+ .|+.|.+-+..
T Consensus 277 a~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D------~p~~I~kKI~~ 327 (437)
T 1r6u_A 277 APRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTD------TAKQIKTKVNK 327 (437)
T ss_dssp GGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTC------CHHHHHHHHHH
T ss_pred HHHhCCCCceEeecccccCCCCCccccCCCCCCCeeeccC------CHHHHHHHhhc
Confidence 6788988898899999999999 899999877 34432 78888887766
No 54
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=98.43 E-value=1.2e-07 Score=95.72 Aligned_cols=92 Identities=23% Similarity=0.285 Sum_probs=64.1
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceec
Q 013441 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE--RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~~--R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~Q 136 (443)
-|||.|||||+..++-+|..-+. +...++-|-| |++. ....+....+..++..+||+++... .|.|
T Consensus 14 ~PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~-------i~~q 85 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKST-------LFVQ 85 (341)
T ss_dssp CSSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSE-------EEEG
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcE-------EEec
Confidence 46799999999999988864444 3566666777 4422 2345667788888999999998754 6889
Q ss_pred cccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHH
Q 013441 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKMK 170 (443)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r 170 (443)
|+-.+... | .....|.++..+++++.
T Consensus 86 S~v~~~~e-----l---~~~l~~~~~~~~l~R~~ 111 (341)
T 3sz3_A 86 SHVPEHAQ-----L---GWVLNCYTQMGELSRMT 111 (341)
T ss_dssp GGCTHHHH-----H---HHHHHTTSCHHHHHTCH
T ss_pred cchhhhHH-----H---HHHHHhhccHHHHHHHH
Confidence 99764332 1 12245788888887653
No 55
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=98.42 E-value=6.1e-07 Score=91.98 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=65.0
Q ss_pred CCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCce
Q 013441 61 APSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE--RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (443)
Q Consensus 61 APSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~~--R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy 134 (443)
.--|||.|||||+..++.||..-+. |...++-|-| |++. ....+....+..++..+||+++... .|
T Consensus 41 G~~PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~-------if 112 (388)
T 3prh_A 41 GIQPSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKAT-------LF 112 (388)
T ss_dssp EECCCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEE-------EE
T ss_pred eeCCCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeE-------EE
Confidence 3467899999999999999876554 6777777777 4422 2345666788888999999998754 68
Q ss_pred eccccHHHHHHHHHHHHHcCCeeeecCCHHHHHH
Q 013441 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEK 168 (443)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~ 168 (443)
.||+-.+.. +..- .+.|..+-.++++
T Consensus 113 ~qS~v~~~~-el~w-------~l~~~~~~~~L~R 138 (388)
T 3prh_A 113 IQSEVPAHA-QAGW-------MMQCVAYIGELER 138 (388)
T ss_dssp EGGGSTHHH-HHHH-------HHHTTSCHHHHHT
T ss_pred ecccccchH-HHHH-------HHHhhccHHHHHh
Confidence 999976532 2222 2447777777654
No 56
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=98.39 E-value=3.4e-07 Score=92.64 Aligned_cols=191 Identities=17% Similarity=0.189 Sum_probs=113.2
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecC----CCc--ccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceec
Q 013441 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDL--ERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (443)
Q Consensus 63 SPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIED----TD~--~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~Q 136 (443)
.|||.|||||+..++-+|..-+ .+...++-|-| |+. .....+....+..++..+||+++... .|.|
T Consensus 23 ~PTG~lHLGh~vg~l~~~~~lQ-~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~-------if~q 94 (346)
T 3n9i_A 23 QPSGELTIGNYMGALRQWVQMQ-DDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKST-------IFVQ 94 (346)
T ss_dssp CSCSCCBHHHHHHTHHHHHTTT-TTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSE-------EEEG
T ss_pred CCCCcccHHHHHHHHHHHHHHH-hhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceE-------EEec
Confidence 4679999999999999995433 34566666777 432 13345666788888999999998753 6899
Q ss_pred cccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCce
Q 013441 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSL 216 (443)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~ 216 (443)
|+-...... ...+.|.++..+++++.. | .++.. + .. ..
T Consensus 95 S~v~~~~el--------~~~l~~~~~~~~l~R~~~----------~--------k~~~~-~---~~-----------~~- 132 (346)
T 3n9i_A 95 SHVPEHSQL--------SWALNCYTYFGELSRMTQ----------F--------KDKSA-R---YA-----------EN- 132 (346)
T ss_dssp GGCTHHHHH--------HHHHHTTSBHHHHHTCHH----------H--------HHHHH-H---SG-----------GG-
T ss_pred cccccchHH--------HHHHHHHhhHHHHHHHHH----------H--------HHHHh-c---cC-----------CC-
Confidence 987643321 122467777788775532 1 01110 0 00 00
Q ss_pred eeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcC------CCCCcE
Q 013441 217 KISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMPYF 290 (443)
Q Consensus 217 ~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg------~~~P~f 290 (443)
. +=|..+|-.--+.|=...+.++|.-|.|...+--.-..+.+.|| +..|.-
T Consensus 133 ----~-------------------~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~ 189 (346)
T 3n9i_A 133 ----I-------------------NAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEP 189 (346)
T ss_dssp ----C-------------------BHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEE
T ss_pred ----C-------------------CchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHHHHHhccccCCcccccch
Confidence 0 11233444444455556688999999997543222223444444 223331
Q ss_pred E---EeeceecC-CCc-eecccCCC----CChHHHHHCCCCHHHHHHHHHH
Q 013441 291 A---HVSLILAP-DRS-KLSKRHGA----TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 291 ~---Hlplil~~-dg~-KLSKR~g~----~si~~~r~~G~~peai~n~l~~ 332 (443)
. |.+.|.+. +|+ ||||+.++ +.+.+ .|+.|..-+..
T Consensus 190 li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D------~p~~i~kKI~k 234 (346)
T 3n9i_A 190 FIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE------DPKSVVKKIKR 234 (346)
T ss_dssp CCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS------CHHHHHHHHHT
T ss_pred hccCCcccCccCCCCccccCCCCCCCCceecCCC------CHHHHHHHHHh
Confidence 1 23566666 674 99999864 34422 68888877755
No 57
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=98.38 E-value=2.5e-06 Score=87.07 Aligned_cols=84 Identities=8% Similarity=-0.003 Sum_probs=60.2
Q ss_pred ccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCC-CCcEEEeeceecC-CCc-eecccCCC--CChHHHHH
Q 013441 244 QPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFS-MPYFAHVSLILAP-DRS-KLSKRHGA--TSVGQFRE 318 (443)
Q Consensus 244 ~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~-~P~f~Hlplil~~-dg~-KLSKR~g~--~si~~~r~ 318 (443)
..+|-+--+.|=...+.++|+-|.|...+--.=..+.+.+|.. .|.+.|.|+|.+. +|+ ||||+.++ +.+.
T Consensus 185 ~f~YPlLQaaDil~l~ad~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~---- 260 (373)
T 3vgj_A 185 QILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMD---- 260 (373)
T ss_dssp HHHHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTT----
T ss_pred HHHHHHHHHhcccccCCcEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecC----
Confidence 3455554555555668889999999765543334566788876 5888899999995 885 99999853 4443
Q ss_pred CCCCHHHHHHHHHHh
Q 013441 319 MGYLPQAMVNYLALL 333 (443)
Q Consensus 319 ~G~~peai~n~l~~L 333 (443)
=.|+.|..-+...
T Consensus 261 --D~p~~i~~KI~kA 273 (373)
T 3vgj_A 261 --DSESDVNRKIKKA 273 (373)
T ss_dssp --CCHHHHHHHHHHS
T ss_pred --CCHHHHHHHHHhC
Confidence 2788888888763
No 58
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=98.38 E-value=3.5e-07 Score=91.64 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=53.7
Q ss_pred CcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHH
Q 013441 259 AISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 259 ~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~ 332 (443)
+.+.++-|.|...+--.-.-|.+.+|...|.-.+.|+|.+.+|+||||+.++ +.+.+ .-..|+.+..++..
T Consensus 191 ~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG~KMSKS~~n~I~L~d---~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 191 GVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGGAVWLDP---KKTSPYKFYQFWIN 262 (322)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTEECBSST---TTSCHHHHHHHHHT
T ss_pred CceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCcccccCCCCCeeeccC---CCCCHHHHHHHHhC
Confidence 6777777999877666566677888877676678899999999999999986 33432 23478888887764
No 59
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=98.26 E-value=1.6e-06 Score=89.22 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=41.4
Q ss_pred cceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCC--ceecccCCC-CChHHHHHCCCCHHHHHHHHHH
Q 013441 260 ISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDR--SKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 260 ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg--~KLSKR~g~-~si~~~r~~G~~peai~n~l~~ 332 (443)
.++|..|.|...+--.=.-|.+.+|.+.|...|.|+|.+.+| +||||+.++ +.+.+ .|+.|.+-+..
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D------~p~~i~kKI~k 294 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGTAVLLTD------TEKMVKDKINK 294 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECCCCCC-------------CCBTTC------CHHHHHHHHC-
T ss_pred ceEEEeccchHHHHHHHHHHHHHcCCCCceeeccccccCCCCCcccCCCCCCCcccCCC------CHHHHHHHHHh
Confidence 567889999766544445566789999999899999999999 799999654 44433 78888877644
No 60
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=98.26 E-value=2.7e-06 Score=88.09 Aligned_cols=116 Identities=11% Similarity=0.172 Sum_probs=76.8
Q ss_pred cccchhhhhhcccC----CcceEEecCCCCCCHHHHHHHHHHc-CCCCCcEEEeeceecCCCceecccCCC-CChHHHHH
Q 013441 245 PVYNFCVTVDDATM----AISHVIRAEEHLPNTLRQALIYKAL-GFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFRE 318 (443)
Q Consensus 245 PtY~fA~vVDD~~m----~ITHVIRG~D~l~ntp~q~~ly~aL-g~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~ 318 (443)
.+|-+--+.|=... +.++++-|.|...|--.=..|.+.+ +..+|.-.+.|+|.+.+|+||||+.++ +.+. +
T Consensus 168 f~YplLQaaD~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~---d 244 (420)
T 1jil_A 168 FTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLD---A 244 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSBCBSS---T
T ss_pred HHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCCeEecC---C
Confidence 34443334443344 8999999999887766566777888 877777779999999999999999886 3332 2
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhc
Q 013441 319 MGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRA 380 (443)
Q Consensus 319 ~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~ 380 (443)
.-..|+.+..++... . + -.+..+++.|.. ++.+++..+..+|-..
T Consensus 245 ~~tsp~~i~~ki~~~--~---D---~~v~~~l~~~t~---------~~~~ei~~l~~~~~~g 289 (420)
T 1jil_A 245 EKTSPYEFYQFWINQ--S---D---EDVIKFLKYFTF---------LGKEEIDRLEQSKNEA 289 (420)
T ss_dssp TTSCHHHHHHHHHTC--C---H---HHHHHHHHHHCC---------CCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhcC--C---c---hhHHHHHHHHHc---------CCHHHHHHHHHHHhcC
Confidence 224788888877642 1 1 113445555543 4567777777777643
No 61
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=98.24 E-value=1.1e-06 Score=89.11 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=63.2
Q ss_pred cccchhhhhhcccC----CcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCC-CChHHHHHC
Q 013441 245 PVYNFCVTVDDATM----AISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREM 319 (443)
Q Consensus 245 PtY~fA~vVDD~~m----~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~ 319 (443)
.+|-.--+.|=... +.++|+-|.|...+--.=..|.+.++..+|.-.+.|+|.+.+|+||||+.++ +.+.+ .
T Consensus 192 f~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d---~ 268 (356)
T 2pid_A 192 FFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNR---D 268 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------CCBSST---T
T ss_pred HHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCCeeeccC---C
Confidence 44444334444444 8999999999877665556677888887777788999999999999999876 34422 1
Q ss_pred CCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHh
Q 013441 320 GYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLR 379 (443)
Q Consensus 320 G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~ 379 (443)
-..|+.+..++... . +. .+..+++.|.. ++.+++..+..+|-.
T Consensus 269 ~tsp~~i~~ki~~~--~---D~---~v~~~l~~~t~---------~~~~~i~~l~~~~~~ 311 (356)
T 2pid_A 269 KTSPFELYQFFVRQ--P---DD---SVERYLKLFTF---------LPLPEIDHIMQLHVK 311 (356)
T ss_dssp TSCHHHHHHHHHTC--C---HH---HHHHHHHHHCC---------CCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC--C---ch---hHHHHHHHHHc---------CCchHHHHHHHHHhc
Confidence 24788888887642 1 11 13444454432 355666666666654
No 62
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=98.18 E-value=2e-06 Score=89.14 Aligned_cols=117 Identities=11% Similarity=0.118 Sum_probs=76.3
Q ss_pred cccchhhhhhcccC----CcceEEecCCCCCCHHHHHHHHHHc-CCCCCcEEEeeceecCCCceecccCCC-CChHHHHH
Q 013441 245 PVYNFCVTVDDATM----AISHVIRAEEHLPNTLRQALIYKAL-GFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFRE 318 (443)
Q Consensus 245 PtY~fA~vVDD~~m----~ITHVIRG~D~l~ntp~q~~ly~aL-g~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~ 318 (443)
.+|-+--+.|=... +.++++-|.|...|--.=..|.+.+ +..+|.-.+.|+|.+.+|+||||+.|+ +.+. +
T Consensus 167 f~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~naI~L~---d 243 (419)
T 2ts1_A 167 FSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLD---K 243 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCCCBSS---T
T ss_pred HHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCCeEecC---C
Confidence 34444334443344 8999999999887766556777888 777777779999999999999999876 3332 2
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhcC
Q 013441 319 MGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAI 381 (443)
Q Consensus 319 ~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~~ 381 (443)
.-..|+.+..++... . + -.+..+++.|.. ++.+++..+..+|-...
T Consensus 244 ~~tsp~~i~qki~~~--~---D---~~v~~~l~l~t~---------~~~~ei~~l~~~~~~g~ 289 (419)
T 2ts1_A 244 EKTSPYEFYQFWINT--D---D---RDVIRYLKYFTF---------LSKEEIEALEQELREAP 289 (419)
T ss_dssp TTSCHHHHHHHHHTC--C---H---HHHHHHHHHHCC---------CCHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHhcC--C---c---hhHHHHHHHHHc---------CCHHHHHHHHHHHHccC
Confidence 224788888877642 1 1 113455555543 45677777777776543
No 63
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=98.13 E-value=2.4e-05 Score=85.60 Aligned_cols=197 Identities=14% Similarity=0.128 Sum_probs=116.7
Q ss_pred ceEEEeCCCCCCcCChhhHHHHHH--HHHHHHHcCCeEEEEecC----C-Ccc-cC---cHHHHHHHHHHHHHcCCCCCC
Q 013441 55 QVRVRFAPSPTGNLHVGGARTALF--NYLFARSKGGKFVLRIED----T-DLE-RS---TKESEEAVLQDLSWLGLDWDE 123 (443)
Q Consensus 55 ~vr~RFAPSPTG~LHiG~~rtAL~--n~l~Ar~~gG~fiLRIED----T-D~~-R~---~~~~~~~I~~dL~wLGl~wDe 123 (443)
+.++=-.--|||.||||| .++. ++..-+..|.+.++-|-| | |+. ++ +.+....+..++..+|++++.
T Consensus 40 ~~~vy~G~~PTg~lHLG~--~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 117 (690)
T 3p0j_A 40 LIRCYDGFEPSGRMHIAQ--GIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDK 117 (690)
T ss_dssp TEEEEEEECCCSCCBHHH--HHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CceEEeeecCCCcchhHh--hHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHH
Confidence 444444456789999999 4433 343444567777777777 2 321 22 334456678889999999876
Q ss_pred CCCCCCCCCceeccccH----HHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHh
Q 013441 124 GPGVGGDYGPYRQSERN----SLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELE 199 (443)
Q Consensus 124 gp~~gg~~gpy~QSer~----~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~ 199 (443)
.. .|.||+-. +.|-..+-.+ | +.+|-.++.+. +.+-
T Consensus 118 ~~-------i~~qS~~v~~~~~l~~~~~~~i---~----~~~tv~~m~~~----------~~~~---------------- 157 (690)
T 3p0j_A 118 VL-------FLWSSEEITSHADTYWRMVLDI---G----RQNTIARIKKC----------CTIM---------------- 157 (690)
T ss_dssp EE-------EEEHHHHHTTSHHHHHHHHHHH---H----HTSCHHHHHTT----------C-------------------
T ss_pred eE-------EEechHHHHhhHHHHHHHHHHH---H----hhCCHHHHHhh----------hhhh----------------
Confidence 43 57898732 2332222222 1 11232322210 0010
Q ss_pred cCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHH
Q 013441 200 RGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALI 279 (443)
Q Consensus 200 ~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~l 279 (443)
|+.. ++ =+-|..+|-.--+.|=...+.++|.-|.|...+--.=.-+
T Consensus 158 ------------------------~r~~------~~----i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ~~~l~l~Rdl 203 (690)
T 3p0j_A 158 ------------------------GKTE------GT----LTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREY 203 (690)
T ss_dssp ----------------------------------CC----CCCSCSSHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHH
T ss_pred ------------------------hhcc------CC----CchhhHhhHHHHHHHHHhhCCCEEeccccHHHHHHHHHHH
Confidence 0000 00 0124556655556655566889999999976554333456
Q ss_pred HHHcCCC-CCcEEEeeceecC-CCc-eecccCCC--CChHHHHHCCCCHHHHHHHHHHh
Q 013441 280 YKALGFS-MPYFAHVSLILAP-DRS-KLSKRHGA--TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 280 y~aLg~~-~P~f~Hlplil~~-dg~-KLSKR~g~--~si~~~r~~G~~peai~n~l~~L 333 (443)
.+.+|.. .|...|.|+|.+. +|+ ||||+.++ +.|. =.|+.|..-+...
T Consensus 204 a~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~------D~p~~i~kKI~~A 256 (690)
T 3p0j_A 204 CDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME------DTEEDVARKIRQA 256 (690)
T ss_dssp HHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT------CCHHHHHHHHHTS
T ss_pred HHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeecc------CCHHHHHHHHHhC
Confidence 6788876 5788899999998 885 99999873 4443 2788888887654
No 64
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=98.02 E-value=1.5e-05 Score=81.82 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=66.1
Q ss_pred CcceEEecCCCCCCHHHHHHHHHHc-----------------CCCCCcEEEeeceecCCCceecccCCC-CChHHHHHCC
Q 013441 259 AISHVIRAEEHLPNTLRQALIYKAL-----------------GFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMG 320 (443)
Q Consensus 259 ~ITHVIRG~D~l~ntp~q~~ly~aL-----------------g~~~P~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G 320 (443)
+.++++-|.|...|--.=+-|.+.+ |.++|.-.+.|+|.+.+|+||||+.++ +.|.+ .-
T Consensus 232 ~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d---~~ 308 (392)
T 1y42_X 232 GVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP---YQ 308 (392)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST---TT
T ss_pred CccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC---CC
Confidence 6999999999866544333443332 224566678999999999999999876 33322 12
Q ss_pred CCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhc
Q 013441 321 YLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRA 380 (443)
Q Consensus 321 ~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~ 380 (443)
..|..+..++... . +. .+..++..|.. ++.+++..+..+|-..
T Consensus 309 tsp~~i~qki~~~--~---D~---~v~~~l~~ft~---------l~~~ei~~l~~~~~~g 351 (392)
T 1y42_X 309 TSVFDFYGYFVRR--S---DQ---EVENLLKLFTF---------MPISEITKTMEEHIKD 351 (392)
T ss_dssp SCHHHHHHHHHTC--C---TT---THHHHHHHHCC---------CCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHcC--C---ch---hHHHHHHHHHh---------CChhHHHHHHHHHhcC
Confidence 4788888888653 1 11 23555555542 4666777777777653
No 65
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=97.91 E-value=1.2e-05 Score=90.35 Aligned_cols=94 Identities=23% Similarity=0.276 Sum_probs=71.2
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHc
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWL 117 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~----------------~R~~~~~~~~I~~dL~wL 117 (443)
+.+=-.|.|||.|||||+|++++...++|. ..|.-++.+-.+|. ...+.++.+.+.++|+.|
T Consensus 36 ~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~L 115 (878)
T 2v0c_A 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM 115 (878)
T ss_dssp EEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 444445999999999999999999888884 46777776666552 122467888999999999
Q ss_pred CCCCC--CCCCCCCCCCcee--ccccHHHHHHHHHHHHHcCCeee
Q 013441 118 GLDWD--EGPGVGGDYGPYR--QSERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 118 Gl~wD--egp~~gg~~gpy~--QSer~~~Y~~~a~~Li~~G~AY~ 158 (443)
|+..| . +|+ ..++...-++...+|.++|++|.
T Consensus 116 Gi~~Dw~~---------~~~T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 116 GILYDWDR---------EVTTCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp TCCCCGGG---------CCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCC---------CeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98755 3 232 33466677788999999999997
No 66
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=97.86 E-value=2.2e-05 Score=88.15 Aligned_cols=96 Identities=25% Similarity=0.323 Sum_probs=70.0
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHc
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWL 117 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~----------------~R~~~~~~~~I~~dL~wL 117 (443)
+.+=-.|.|||.|||||+|++++...+||. ..|.-++..-.+|. ..-+.++.+.|.++|+.|
T Consensus 56 ~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~L 135 (880)
T 4arc_A 56 YCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML 135 (880)
T ss_dssp EEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 344446899999999999999999999985 56777776655553 112356788899999999
Q ss_pred CCCCCCCCCCCCCCCceecc--ccHHHHHHHHHHHHHcCCeee
Q 013441 118 GLDWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 118 Gl~wDegp~~gg~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (443)
|+..|-.- +|+-+ ++...-++...+|.++|++|.
T Consensus 136 Gis~Dw~~-------~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 136 GFGYDWSR-------ELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp TCCCCGGG-------CEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCC-------CEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98765210 24433 345566778889999999998
No 67
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=97.81 E-value=3.1e-05 Score=86.22 Aligned_cols=96 Identities=23% Similarity=0.159 Sum_probs=69.5
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHH--HcCCeEEEEecCCCcc---------------------------------
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDLE--------------------------------- 100 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLRIEDTD~~--------------------------------- 100 (443)
+.+--.|.|||.|||||++++++...+|| ...|.-++++-.+|.-
T Consensus 37 ~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~ 116 (810)
T 1wkb_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (810)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHH
T ss_pred EEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHH
Confidence 56666789999999999999999999999 4678888886433320
Q ss_pred -------cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceecccc----HHHHHHHHHHHHHcCCeee
Q 013441 101 -------RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSER----NSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 101 -------R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~QSer----~~~Y~~~a~~Li~~G~AY~ 158 (443)
..+..+.+.+.++|++||+..|-. .+|+-+++ ...-+....+|.++|.+|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~-------~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWS-------REFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHHTTCCCCGG-------GCCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeEEecC-------CceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 012345578999999999875511 14555553 3334567788999999987
No 68
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=97.62 E-value=2.1e-05 Score=87.77 Aligned_cols=90 Identities=23% Similarity=0.279 Sum_probs=67.9
Q ss_pred eCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c------------------------CcH
Q 013441 60 FAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R------------------------STK 104 (443)
Q Consensus 60 FAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~---------R------------------------~~~ 104 (443)
=.|.|||.|||||+++.++...+||. ..|.-++++-.+|.- + .+.
T Consensus 45 ~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~ 124 (821)
T 1ile_A 45 GPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVF 124 (821)
T ss_dssp CCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHH
Confidence 35899999999999999999999984 578878877777741 1 112
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeee
Q 013441 105 ESEEAVLQDLSWLG--LDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 105 ~~~~~I~~dL~wLG--l~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (443)
++.+.+.+.+++|| ++||. +|+-++ +...-+....+|.++|.+|+
T Consensus 125 ~~~~~~~~~~~~lg~~~dwd~---------~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 125 TYEKEWEAFTERIAYWVDLED---------AYATLEPTYIESIWWSLKNLFDRGLLYR 173 (821)
T ss_dssp TTHHHHTTHHHHTTCCCEEEE---------EEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhCCeEccCC---------CeEECCHHHHHHHHHHHHHHHHcCCeee
Confidence 45677889999999 88986 455544 23334456679999999998
No 69
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.56 E-value=8.7e-05 Score=83.76 Aligned_cols=93 Identities=23% Similarity=0.369 Sum_probs=69.7
Q ss_pred EEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc--------------cc--------------CcHHH
Q 013441 57 RVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL--------------ER--------------STKES 106 (443)
Q Consensus 57 r~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~--------------~R--------------~~~~~ 106 (443)
.+==.|.|||.|||||+++.++...++|. ..|.-++.+-.+|. .+ .+.++
T Consensus 52 i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~~ 131 (917)
T 1ffy_A 52 LHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQ 131 (917)
T ss_dssp EECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHHH
Confidence 34445799999999999999999999985 57777776665552 01 23466
Q ss_pred HHHHHHHHHHcCC--CCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeee
Q 013441 107 EEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 107 ~~~I~~dL~wLGl--~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (443)
++.+.++++.||+ +||. +|+-.+ +...-+....+|.++|++|+
T Consensus 132 ~~~~~~~~~rlG~~~Dwd~---------~~~T~d~~~~~~v~~~F~~l~~kGliYr 178 (917)
T 1ffy_A 132 IELQKKDFRRLGVRGDFND---------PYITLKPEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHHHTTTCCSCTTS---------CEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhCeEEccCC---------CeEcCCHHHHHHHHHHHHHHHHcCCeEe
Confidence 7899999999999 5886 465543 33444567778999999998
No 70
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.50 E-value=0.00022 Score=79.95 Aligned_cols=96 Identities=25% Similarity=0.278 Sum_probs=72.1
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc------------------cC-------------
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE------------------RS------------- 102 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~~------------------R~------------- 102 (443)
+.+=-.|.|||.|||||+++.++...++|. ..|.-++.+-.+|.- +.
T Consensus 37 ~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~ 116 (862)
T 1gax_A 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ 116 (862)
T ss_dssp EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHH
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHH
Confidence 344445899999999999999999999985 689988888877731 11
Q ss_pred -cHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceeccc--cHHHHHHHHHHHHHcCCeee
Q 013441 103 -TKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 103 -~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (443)
+.++.+.|.+.++.||+..|-. .+|.-.+ +...-+....+|.++|.+|+
T Consensus 117 ~~~~~~~~~~~q~~rlG~s~Dw~-------r~~~T~d~~~~~~v~~~F~~L~~kGliYr 168 (862)
T 1gax_A 117 WKEESGGTILKQLKRLGASADWS-------REAFTMDEKRSRAVRYAFSRYYHEGLAYR 168 (862)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGG-------GCEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHHHHhCccccCC-------CCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 3567889999999999765521 1344332 44555677889999999998
No 71
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=97.28 E-value=0.00016 Score=82.01 Aligned_cols=94 Identities=23% Similarity=0.207 Sum_probs=66.4
Q ss_pred eEEEeCCCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------------------------
Q 013441 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL---------------------------------- 99 (443)
Q Consensus 56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRIEDTD~---------------------------------- 99 (443)
+.+==.|.|||.||+||+++.++...+||. ..|.-+++.-..|.
T Consensus 37 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~ 116 (967)
T 1wz2_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (967)
T ss_dssp BEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH
T ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH
Confidence 445556899999999999999999999985 57777777533221
Q ss_pred ------ccCcHHHHHHHHHHHHHcCCC--CCCCCCCCCCCCceecccc----HHHHHHHHHHHHHcCCeee
Q 013441 100 ------ERSTKESEEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQSER----NSLYKQYADKLLESGHVYR 158 (443)
Q Consensus 100 ------~R~~~~~~~~I~~dL~wLGl~--wDegp~~gg~~gpy~QSer----~~~Y~~~a~~Li~~G~AY~ 158 (443)
...+..+.+.+.++|+.||+. |+. +|.-.+. ...-+....+|.++|++|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r---------~~~T~d~np~y~~~v~~~F~~L~~kGliyr 178 (967)
T 1wz2_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSR---------EFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (967)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTS---------CCBCSTTSHHHHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceEecCC---------CeEECCCChhHHHHHHHHHHHHHHCCCEEE
Confidence 111234557899999999975 654 4555553 3333456668889999998
No 72
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=96.10 E-value=0.014 Score=65.93 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=57.4
Q ss_pred CCcceEEecCCCCCCHHHHHHHHHH---cCCCCC-cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHH
Q 013441 258 MAISHVIRAEEHLPNTLRQALIYKA---LGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 258 m~ITHVIRG~D~l~ntp~q~~ly~a---Lg~~~P-~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~ 332 (443)
+-+.-.+-|.||+.. -.|..++.+ .|..++ ....+.++++.+|+|||||.|+ +++.++.++ |-++++|.|++.
T Consensus 547 ~P~Dl~~~G~D~~r~-wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~-yGaDalR~~lls 624 (917)
T 1ffy_A 547 FPADMYLEGSDQYRG-WFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQ-KGADIARLWVSS 624 (917)
T ss_dssp SSBSEEEEEGGGGTT-HHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHH-TCHHHHHHHHHT
T ss_pred CCceEEEEEeccccc-HHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHh-CCHHHHHHHHhc
Confidence 345555678888643 234443333 355443 2344489998899999999998 588888875 889999999986
Q ss_pred hCCCCCCCCcccCHHHH
Q 013441 333 LGWGDGTENEFFTLKQL 349 (443)
Q Consensus 333 LG~~~~~~~e~~s~~el 349 (443)
++...+-.|+.+.+
T Consensus 625 ---~~~~~D~~fs~~~l 638 (917)
T 1ffy_A 625 ---TDYLADVRISDEIL 638 (917)
T ss_dssp ---SCTTSCEECCHHHH
T ss_pred ---cCCCCCcccCHHHH
Confidence 23333444665544
No 73
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=95.16 E-value=0.045 Score=60.93 Aligned_cols=88 Identities=14% Similarity=0.082 Sum_probs=57.6
Q ss_pred CCcceEEecCCCCCCHHHHHHHH--HH-cCCCCC-cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHH
Q 013441 258 MAISHVIRAEEHLPNTLRQALIY--KA-LGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 258 m~ITHVIRG~D~l~ntp~q~~ly--~a-Lg~~~P-~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~ 332 (443)
+.++-.+-|.||+..= .+..+. .+ .|.+++ .+.-+.++++.+|+|||||.|+ +++.++.++ |.++++|.||+.
T Consensus 543 ~P~dl~~~G~D~~r~w-~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~-yGaDalR~~ll~ 620 (821)
T 1ile_A 543 FPADFIAEGIDQTRGW-FNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYV 620 (821)
T ss_dssp SSBSBEEEEGGGGGTH-HHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTT-TCHHHHHHHHHH
T ss_pred CCcccccchhhhhccH-HHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHH-hCHHHHHHHHHh
Confidence 3455456688886432 222222 23 365444 3555577788899999999998 589999876 899999999988
Q ss_pred hCCCCCCCCcccCHHHH
Q 013441 333 LGWGDGTENEFFTLKQL 349 (443)
Q Consensus 333 LG~~~~~~~e~~s~~el 349 (443)
.+- ...+-.|+.+.+
T Consensus 621 ~~~--~~~d~~fs~~~l 635 (821)
T 1ile_A 621 SAP--PEADRRFGPNLV 635 (821)
T ss_dssp HSC--SSSCEECCHHHH
T ss_pred CCC--CCCCcEecHHHH
Confidence 751 112234555544
No 74
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=93.73 E-value=0.1 Score=58.51 Aligned_cols=89 Identities=19% Similarity=0.134 Sum_probs=55.8
Q ss_pred CCcceEEecCCCCCCHHH-HHHH-HHHcCCCCC-cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHHh
Q 013441 258 MAISHVIRAEEHLPNTLR-QALI-YKALGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (443)
Q Consensus 258 m~ITHVIRG~D~l~ntp~-q~~l-y~aLg~~~P-~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~L 333 (443)
+-.+-.+-|.|.+..=+. .+.. ....|..|. ...-+.++++.+|+|||||.|+ ++..++.++ |.++++|.||+..
T Consensus 480 ~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~ll~~ 558 (862)
T 1gax_A 480 YPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVER-YGADALRFALIYL 558 (862)
T ss_dssp CSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHH
T ss_pred CCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHH-cChHHHHHHHHhc
Confidence 344555667775542221 1111 133465332 3445578899999999999998 588888875 7899999999886
Q ss_pred CCCCCCCCcccCHHHH
Q 013441 334 GWGDGTENEFFTLKQL 349 (443)
Q Consensus 334 G~~~~~~~e~~s~~el 349 (443)
+- ...+-.|+.+.+
T Consensus 559 ~~--~~~D~~fs~~~l 572 (862)
T 1gax_A 559 AT--GGQDIRLDLRWL 572 (862)
T ss_dssp CC--TTCCEECCHHHH
T ss_pred CC--CCCCCccCHHHH
Confidence 42 223334555544
No 75
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=93.23 E-value=0.11 Score=57.62 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=50.2
Q ss_pred CCcceEEecCCCCCCH-HHHHHHHHH-cCC-CCC-cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHH
Q 013441 258 MAISHVIRAEEHLPNT-LRQALIYKA-LGF-SMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 258 m~ITHVIRG~D~l~nt-p~q~~ly~a-Lg~-~~P-~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~ 332 (443)
+.++--+-|.|++..= ...+.+-.+ ++. +.| .+.|+.+|+. +|+|||||.|+ +++.++.++ |.++++|.||+.
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~-yGaDalR~~ll~ 679 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMS 679 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHH-HCHHHHHHHHHH
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHH-cChHHHHHHHHh
Confidence 3455556689986421 111222223 342 345 4668888776 89999999998 588888876 789999999976
Q ss_pred hC
Q 013441 333 LG 334 (443)
Q Consensus 333 LG 334 (443)
.+
T Consensus 680 ~~ 681 (810)
T 1wkb_A 680 LA 681 (810)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 76
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=92.95 E-value=0.17 Score=57.31 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=51.1
Q ss_pred CCcceEEecCCCCCCH-HHHHHHHHH-cCC-CCC-cEEEeeceecCCCceecccCCC-CChHHHHHCCCCHHHHHHHHHH
Q 013441 258 MAISHVIRAEEHLPNT-LRQALIYKA-LGF-SMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (443)
Q Consensus 258 m~ITHVIRG~D~l~nt-p~q~~ly~a-Lg~-~~P-~f~Hlplil~~dg~KLSKR~g~-~si~~~r~~G~~peai~n~l~~ 332 (443)
+.+...+-|.|++..= -.-+.+-.+ ++. +.| .+.|+.+++. +|+|||||.|+ +++.++.++ |.++++|.||+.
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~-yGaDalR~~ll~ 679 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMS 679 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHT-TCHHHHHHHHHH
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHHH-hChHHHHHHHHh
Confidence 3455556789987431 011111233 343 234 4678888776 89999999998 588888886 899999999976
Q ss_pred hC
Q 013441 333 LG 334 (443)
Q Consensus 333 LG 334 (443)
.+
T Consensus 680 ~~ 681 (967)
T 1wz2_A 680 LA 681 (967)
T ss_dssp HC
T ss_pred CC
Confidence 54
No 77
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=90.98 E-value=0.72 Score=50.43 Aligned_cols=78 Identities=13% Similarity=-0.040 Sum_probs=53.4
Q ss_pred CCceEEEeCCCCCCcCChhhHHHHHHHHHHHH--HcCCeEEEEecCC----Ccc--c---CcHHHHHHHHHHHHHcCCCC
Q 013441 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDT----DLE--R---STKESEEAVLQDLSWLGLDW 121 (443)
Q Consensus 53 ~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLRIEDT----D~~--R---~~~~~~~~I~~dL~wLGl~w 121 (443)
.++.-|=|-| |||.|||||+...+...-.-. ..|+..++-|-|- +.+ . .+.++.....+++..+|++.
T Consensus 380 ~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~ 458 (690)
T 3p0j_A 380 AKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPS 458 (690)
T ss_dssp SSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred CCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 4455567999 999999999998876222222 3488999999883 222 2 23455567778899999985
Q ss_pred CCCCCCCCCCCceecccc
Q 013441 122 DEGPGVGGDYGPYRQSER 139 (443)
Q Consensus 122 Degp~~gg~~gpy~QSer 139 (443)
+.. .++||+-
T Consensus 459 -k~~-------fv~~S~~ 468 (690)
T 3p0j_A 459 -SVK-------IVTENEV 468 (690)
T ss_dssp -TSE-------EEEHHHH
T ss_pred -CeE-------EEECCch
Confidence 221 5788873
No 78
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=90.01 E-value=0.41 Score=53.76 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=54.4
Q ss_pred ccCCcceEEecCCCCCCHHHHH----HHHHHcCC---CCC--cEEEeecee-------cCCCc-----------------
Q 013441 256 ATMAISHVIRAEEHLPNTLRQA----LIYKALGF---SMP--YFAHVSLIL-------APDRS----------------- 302 (443)
Q Consensus 256 ~~m~ITHVIRG~D~l~ntp~q~----~ly~aLg~---~~P--~f~Hlplil-------~~dg~----------------- 302 (443)
.-|.+..-|-|.||...--... .+...+|. ..| ...+..+|+ +.+|+
T Consensus 540 ~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~ 619 (880)
T 4arc_A 540 YWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKG 619 (880)
T ss_dssp HHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTC
T ss_pred ccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhcccccccc
Confidence 3567888888999854321111 11223454 456 344557886 67777
Q ss_pred -------------------eecccCCC-CChHHHHHCCCCHHHHHHHHHHhC
Q 013441 303 -------------------KLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (443)
Q Consensus 303 -------------------KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG 334 (443)
|||||.|+ +++.++.++ |-++++|.|++..+
T Consensus 620 ~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIek-YGADalRl~ll~~~ 670 (880)
T 4arc_A 620 RIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVER-YGADTVRLFMMFAS 670 (880)
T ss_dssp CEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHSS
T ss_pred ccccccccCCccccccccccccCcCCCCCCHHHHHHH-cCchHHHHHHHhcC
Confidence 99999998 588888877 88999999998874
No 79
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=88.93 E-value=0.88 Score=51.06 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=33.0
Q ss_pred ceecccCCC-CChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHH
Q 013441 302 SKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQL 349 (443)
Q Consensus 302 ~KLSKR~g~-~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~el 349 (443)
+|||||.|+ ++..++.++ |-++++|.|++..+- ...+-.++.+.+
T Consensus 636 ~KMSKSkGNvVdP~diI~~-yGADalRl~ll~~~~--~~~D~~fs~~~v 681 (878)
T 2v0c_A 636 AVMSKSKGNGVMVGPFVKE-QGADIARITILFAAP--PENEMVWTEEGV 681 (878)
T ss_dssp EECSGGGTCCCBHHHHHHH-SCHHHHHHHHHHHSC--TTSCEEECHHHH
T ss_pred HHhhccCCCcccHHHHHHH-cCccHHHHHHhccCC--CCCCceeCHHHH
Confidence 899999998 588888876 889999999988642 222333555543
Done!