RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 013441
         (443 letters)



>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 305

 Score =  320 bits (820), Expect = e-108
 Identities = 134/310 (43%), Positives = 196/310 (63%), Gaps = 6/310 (1%)

Query: 56  VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
           V  R APSPTG+ HVG A  ALFNY +AR  GG+F++RIEDTD  R    +EE +L  L 
Sbjct: 2   VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61

Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
           WLGL +DEGP VGG +GPYRQSER  LY++YA++LL+ G  YR F + EELE++++    
Sbjct: 62  WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKE--- 118

Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGD 235
                 Y G+       E ++   RG P+  R +VP+ G+ ++ D +RG V ++   + D
Sbjct: 119 ---KGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPD 175

Query: 236 FVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSL 295
            V+++S+G P Y+    VDD  M ++ VIRAEE L +T    L+Y+A G+  P F H+ L
Sbjct: 176 VVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235

Query: 296 ILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTI 355
           +  PD++K+SKR   TS+  ++  G+LP+A+ NYL L+G+      E FTL++ ++ FT 
Sbjct: 236 LRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTW 295

Query: 356 ERVNKSGAIF 365
           ERV+  G +F
Sbjct: 296 ERVSLGGPVF 305


>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
           {Escherichia coli [TaxId: 562]}
          Length = 286

 Score =  247 bits (630), Expect = 6e-80
 Identities = 82/314 (26%), Positives = 136/314 (43%), Gaps = 33/314 (10%)

Query: 55  QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDL 114
           Q   RFAPSP+G LH G    AL +YL AR++ G++++RIED D  R    + E +L+ L
Sbjct: 2   QYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQL 61

Query: 115 SWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAK 174
              GL W        D     QS+R+  Y++    L E G  Y C C+   ++ +  I  
Sbjct: 62  EHYGLHW--------DGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYD 113

Query: 175 LKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLG 234
                  +    A                   R R     +     L     +       
Sbjct: 114 GHCRVLHHGPDNA-----------------AVRIRQQHPVTQFTDQLRGIIHADEKLARE 156

Query: 235 DFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294
           DF+I R +G   YN  V VDD    ++ ++R  + +  T+RQ  +Y+  G+ +P + H+ 
Sbjct: 157 DFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLP 216

Query: 295 LILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQL----V 350
           L L P  +KLSK++ A ++      G     ++  L  LG       + F+++Q+    V
Sbjct: 217 LALNPQGAKLSKQNHAPAL----PKGDPRPVLIAALQFLGQQAEAHWQDFSVEQILQSAV 272

Query: 351 EKFTIERVNKSGAI 364
           + + +  V +S  +
Sbjct: 273 KNWRLTAVPESAIV 286


>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
           {Escherichia coli [TaxId: 562]}
          Length = 331

 Score =  235 bits (601), Expect = 5e-75
 Identities = 56/330 (16%), Positives = 110/330 (33%), Gaps = 30/330 (9%)

Query: 50  NKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEA 109
           +     V  RF P P G LH+G A++   N+  A+   G+  LR +DT+  +   E  E+
Sbjct: 14  SGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVES 73

Query: 110 VLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKM 169
           +  D+ WLG  W               S+       YA +L+  G  Y    + E++ + 
Sbjct: 74  IKNDVEWLGFHW--------SGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREY 125

Query: 170 KEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWN 229
           +           Y  +      A  +K    G          K        ++R  V + 
Sbjct: 126 RGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYR 185

Query: 230 L-DTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGF--- 285
           +          +    P+Y+F   + DA   I+H +   E   N      +   +     
Sbjct: 186 IKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVH 245

Query: 286 -------------SMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLAL 332
                        ++     ++L++     +        ++   R  GY   ++  +   
Sbjct: 246 PRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKR 305

Query: 333 LGWGDG-TENEFFTLKQLVEKFTIERVNKS 361
           +G        E  +L+  +     E +N++
Sbjct: 306 IGVTKQDNTIEMASLESCIR----EDLNEN 331


>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 317

 Score = 97.9 bits (242), Expect = 2e-23
 Identities = 29/290 (10%), Positives = 77/290 (26%), Gaps = 13/290 (4%)

Query: 54  GQVRVRFAPSPTGNLHVGGARTA-----LFNYLFARSKGGKFVLRIEDTDLERSTKESEE 108
            +  V    +P+G +HVG  R       + + L  +    + +   +D D  R    +  
Sbjct: 18  EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVP 77

Query: 109 AVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEK 168
              +D   + +     P    +        +     +     ++  +    +   E  E+
Sbjct: 78  QEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEE 137

Query: 169 MKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSW 228
           ++   + +        K+          E              +   ++     + +   
Sbjct: 138 IRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKC 197

Query: 229 NLDTLGDFVIMRSNGQPVYNFCVTVD----DATMAISHVIRAEEHLPNTLRQALIYKALG 284
                G   I   N +  +     +           +              + +I +  G
Sbjct: 198 PEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYG 257

Query: 285 FSMPY-FAHVSLILAPDRSKLSKRHG-ATSVGQFREMGYLPQAMVNYLAL 332
              P    +  + +   + K+S   G    +    E   L   +V ++  
Sbjct: 258 KEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYE--VLEPGLVRFIYA 305


>d1j09a1 a.97.1.1 (A:306-468) C-terminal domain of glutamyl-tRNA
           synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}
          Length = 163

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 366 DSTKLRWMNGQHLRAIPSNE-LTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPD 424
           D  KLRWMNG+++R + S E + + +    +  G+  ES+  ++  A++L++   D + +
Sbjct: 1   DLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSWESE-AYLRRAVELMRPRFDTLKE 59

Query: 425 S 425
            
Sbjct: 60  F 60


>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
          {Thermus thermophilus [TaxId: 274]}
          Length = 348

 Score = 30.8 bits (68), Expect = 0.31
 Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 2/39 (5%)

Query: 62 PSPTGNLHVGGARTALFNYLFARSK--GGKFVLRIEDTD 98
                 H+G A T +     AR     G     +  TD
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTD 50


>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase
          (ValRS) {Thermus thermophilus [TaxId: 274]}
          Length = 425

 Score = 31.0 bits (69), Expect = 0.32
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 62 PSPTGNLHVGGARTALFNYLFARSK--GGKFVLRIEDTD 98
          P+ TG+LH+G A          R K   G   + +  TD
Sbjct: 43 PNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD 81


>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
          (MetRS) {Escherichia coli [TaxId: 562]}
          Length = 350

 Score = 30.6 bits (68), Expect = 0.34
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 62 PSPTGNLHVGGARTALFNYLFARSK--GGKFVLRIEDTD 98
          P   G++H+G     +   ++ R +   G  V  I   D
Sbjct: 11 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADD 49


>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
          (IleRS) {Staphylococcus aureus [TaxId: 1280]}
          Length = 450

 Score = 30.7 bits (68), Expect = 0.35
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 62 PSPTGNLHVGGARTALFNYLFARSK--GGKFVLRIEDTD 98
          P   GNLH+G A   +      R K   G +   +   D
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWD 95


>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
           binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 108

 Score = 28.8 bits (64), Expect = 0.48
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 376 QHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQL 414
            +++ +PS E   L  ++WK      + K  +  +  Q 
Sbjct: 34  ANMKDVPSTERMVLCSQQWKLLS--QKEKDAYHKKCDQK 70


>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase
          (LeuRS) {Thermus thermophilus [TaxId: 274]}
          Length = 494

 Score = 29.6 bits (65), Expect = 0.82
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 62 PSPTGNLHVGGARTALFNYLFARSK--GGKFVLRIEDTD 98
          P P+G+LH+G  +      + AR +   G  VL     D
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWD 80


>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 370

 Score = 29.5 bits (65), Expect = 0.94
 Identities = 32/194 (16%), Positives = 50/194 (25%), Gaps = 10/194 (5%)

Query: 61  APSPTGNLHVGGARTALFNYLFAR--SKGGKFVLR---IED--TDLERSTKESEEAVLQD 113
           + +P   LHVG  R        AR  +  G+ VL    I+D       +        L  
Sbjct: 15  SVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTW 74

Query: 114 LSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIA 173
                 D   G      +            ++    L                       
Sbjct: 75  DGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHAL 134

Query: 174 KLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTL 233
             +    V+      A   +    L   +P+ +R R  K     + D             
Sbjct: 135 NARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDP-- 192

Query: 234 GDFVIMRSNGQPVY 247
             FV++RSNG   Y
Sbjct: 193 -FFVLLRSNGTATY 205


>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 264

 Score = 29.0 bits (63), Expect = 1.1
 Identities = 10/61 (16%), Positives = 24/61 (39%)

Query: 93  RIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLE 152
           ++ D              + +L   G++ ++    GG   PY + ++    K  AD ++ 
Sbjct: 179 QLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKDKQIPTQKDLADAIIN 238

Query: 153 S 153
           +
Sbjct: 239 T 239


>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
          (IleRS) {Thermus thermophilus [TaxId: 274]}
          Length = 452

 Score = 29.1 bits (64), Expect = 1.1
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 62 PSPTGNLHVGGARTALFNYLFARSK--GGKFVLRIEDTD 98
          P+  G  HVG A+   +  LF R K   G +  R    D
Sbjct: 47 PTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85


>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 71

 Score = 26.8 bits (59), Expect = 1.4
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 381 IPSNELTKLIGERWKSTGILTESKGPFVDEA 411
           +  +E +K   ERWK+     + KG F D A
Sbjct: 29  VNFSEFSKKCSERWKTMS--AKEKGKFEDMA 57


>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 80

 Score = 26.7 bits (59), Expect = 1.6
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 381 IPSNELTKLIGERWKSTGILTESKGPFVDEAIQL 414
           + ++E++K +G  WK        K PF+DEA +L
Sbjct: 28  MHNSEISKRLGAEWKLLS--ETEKRPFIDEAKRL 59


>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
          (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
          Length = 361

 Score = 28.4 bits (62), Expect = 1.7
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 62 PSPTGNLHVG-GARTALFNYLFARSK--GGKFVLRIEDTD 98
          P   G +H G  A   L   +F R     G+ V+ I  TD
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTD 50


>d1j5pa3 d.81.1.3 (A:109-211) Hypothetical protein TM1643
           {Thermotoga maritima [TaxId: 2336]}
          Length = 103

 Score = 27.0 bits (60), Expect = 1.9
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 41  VAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED 96
           VA+++         +V +   P+   N+H+          +   S  G +  +IE+
Sbjct: 57  VASTIGLIVGFEKVKVTIVADPAMDHNIHI----------VRISSAIGNYEFKIEN 102


>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 348

 Score = 28.3 bits (62), Expect = 1.9
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 61 APSPTGNLHVGGARTALFNYLFAR 84
          +P+     H G  R+ +     A 
Sbjct: 16 SPNIAKPFHAGHLRSTIIGGFLAN 39


>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 388

 Score = 27.3 bits (59), Expect = 4.2
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 5/65 (7%)

Query: 372 WMNGQHLRAIPS----NELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDK 427
                  RA+ +      L+        +   +   +G   D AI   +  I+L P    
Sbjct: 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI-DLAIDTYRRAIELQPHFPD 272

Query: 428 ALSNL 432
           A  NL
Sbjct: 273 AYCNL 277



 Score = 26.6 bits (57), Expect = 6.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 409 DEAIQLLKDGIDLVPDSDKALSNL 432
            EA+   K+ I + P    A SN+
Sbjct: 356 QEALMHYKEAIRISPTFADAYSNM 379


>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 214

 Score = 26.5 bits (58), Expect = 5.7
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 24/98 (24%)

Query: 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRC----------FCSNEELE---- 167
            +  GVG  Y PY              ++++ G V+ C           C     E    
Sbjct: 122 RDHAGVGDFYDPYAAHRIFDRLPPLGIEIVKVGAVFHCPLCGGIASERTCPEGHREKRTA 181

Query: 168 ----KMKEIAKLKQLPPVYTGKWATATDAEVQKELERG 201
               K++ + +  + PP            E+   L RG
Sbjct: 182 ISMTKVRALLREGKAPP----SELVRP--ELLPILRRG 213


>d1iyra_ a.164.1.1 (A:) C-terminal domain of DFF45/ICAD (DFF-C
           domain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 83

 Score = 25.3 bits (55), Expect = 6.0
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 65  TGNLHVGGARTALFNYLFARSKGGKFV-LRIEDTDLERSTKESEEAVLQDLSW 116
           TG      +  AL +++    +  +   L +   DLE  TKE  +A+   L+W
Sbjct: 1   TGISRETSSDVALASHILTALREKQAPELSLSSQDLELVTKEDPKALAVALNW 53


>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
           binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 101

 Score = 25.2 bits (55), Expect = 8.0
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 381 IPSNELTKLIGERWKSTGILTES-KGPFVDEAIQLLK 416
           +P  E    IG RW+    +++S K  +   A +  +
Sbjct: 32  LPLKERMVEIGSRWQR---ISQSQKEHYKKLAEEQQR 65


>d1wmda1 b.18.1.20 (A:319-434) Alkaline serine protease kp-43,
           C-terminal domain {Bacillus sp. KSM-KP43 [TaxId:
           109322]}
          Length = 116

 Score = 25.2 bits (55), Expect = 8.5
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 10/62 (16%)

Query: 196 KELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDD 255
             L      TY F    G  LKIS      + W+ D         ++   V +  + +  
Sbjct: 7   SSLSTSQKATYSFTATAGKPLKIS------LVWS-DAPASTT---ASVTLVNDLDLVITA 56

Query: 256 AT 257
             
Sbjct: 57  PN 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,660,893
Number of extensions: 78447
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 25
Length of query: 443
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,199,356
Effective search space: 425771380
Effective search space used: 425771380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)