BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013442
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 557 bits (1435), Expect = e-159, Method: Compositional matrix adjust.
Identities = 263/416 (63%), Positives = 330/416 (79%), Gaps = 7/416 (1%)
Query: 30 EELTQIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKF 89
E+ +QI K L+FAK PE+F WMV IRRKIHENPELG++E ETSKLIR+EL+ +GI Y++
Sbjct: 8 EDTSQIQTKLLEFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRY 67
Query: 90 PVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLG 149
PVA+TGV+GYIGTG+PPFVALRADMDAL ++E VEWEHKSK+ GKMHACGHD HV MLLG
Sbjct: 68 PVAITGVIGYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLG 127
Query: 150 AAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVA 209
AAK+L RH ++GT+VL+FQPAEEG GAKKM + GAL+NVEAIFG+H+S+ P G A
Sbjct: 128 AAKILHEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAA 187
Query: 210 SRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVL 269
SR G LA G FEAVI GKGGHAAIPQHTIDP+VAAS++++SLQ LVSRE DPLDS+V+
Sbjct: 188 SRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVV 247
Query: 270 TVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVVMKQASVQRCNATVTF-- 327
TV+K GG AFN+IPDS+TIGGT RAF+ QL+QR++EV+ KQA+V RCNA+V
Sbjct: 248 TVSKVNGGNAFNVIPDSITIGGTLRAFT--GFTQLQQRVKEVITKQAAVHRCNASVNLTP 305
Query: 328 DDKSFYPVTVNNKNLHEHFQKVAADMLGVQNIKENRPLMGTEDFSFFAEAIPGYFYYLGM 387
+ + P TVNNK+L++ F+KV D+LG + E P+MG+EDFS+FAE IPG+F LGM
Sbjct: 306 NGREPMPPTVNNKDLYKQFKKVVRDLLGQEAFVEAAPVMGSEDFSYFAETIPGHFSLLGM 365
Query: 388 NDETKGKFETGHSPYFRVNEDALPYGAALHASLATRYLLENQPKTTLASRSLHDEL 443
DET G + + HSP +R+NED LPYGAA+HAS+A +YL E K +++ H+EL
Sbjct: 366 QDETNG-YASSHSPLYRINEDVLPYGAAIHASMAVQYLKEKASKGSVS--GFHEEL 418
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 208/378 (55%), Gaps = 15/378 (3%)
Query: 52 MVNIRRKIHENPELGFQEFETSKLIRAELDQMGIP-YKFPVAVTGVVGYI-GTGQPPFVA 109
++N RR +HE+PEL FQE ET+K IR L++ I P TGV+ I G P +A
Sbjct: 34 LINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQLKTGVIAEIKGREDGPVIA 93
Query: 110 LRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVF 169
+RAD+DAL ++E SKV G HACGHD H A ++G A +L R E+KGT+ +F
Sbjct: 94 IRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIF 153
Query: 170 QPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGK 229
QPAEE GA+K+L+AG L V AIFG H PVGT+ + GP A+ FE VI GK
Sbjct: 154 QPAEEIAAGARKVLEAGVLNGVSAIFGXHNKPDLPVGTIGVKEGPLXASVDRFEIVIKGK 213
Query: 230 GGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTI 289
GGHA+IP ++IDPI AA +I LQ +VSR L + V+++ + + G ++N+IPD
Sbjct: 214 GGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEX 273
Query: 290 GGTFRAFSKESIIQLKQRIEEVVMKQASVQRCNATVTFDDKSF-YPVTVNNKNLHEHFQK 348
GT R F KE+ +Q + E + A + K F Y +V N +
Sbjct: 274 EGTVRTFQKEA----RQAVPEHXRRVAEGIAAGYGAQAEFKWFPYLPSVQNDGTFLNAAS 329
Query: 349 VAADMLGVQNI-KENRPLMGTEDFSFFAEAIPGYFYYLGMNDETKGKFETGHSPYFRVNE 407
AA LG Q + E P G EDF+ + E IPG+F + G N E H P F ++E
Sbjct: 330 EAAARLGYQTVHAEQSP--GGEDFALYQEKIPGFFVWXGTNGT-----EEWHHPAFTLDE 382
Query: 408 DALPYGAALHASLATRYL 425
+AL + A LA L
Sbjct: 383 EALTVASQYFAELAVIVL 400
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/379 (33%), Positives = 192/379 (50%), Gaps = 11/379 (2%)
Query: 52 MVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQP-PFVAL 110
M+ IRR +H++PEL F E ET+K I + + V G+ I +G+P +A+
Sbjct: 16 MIEIRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPRGIKVTIDSGKPGKTLAI 75
Query: 111 RADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQ 170
RAD DAL + E S+ G MHACGHDAH A +L A+ L + G +V++ Q
Sbjct: 76 RADFDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAETLAEMKDSFTGKVVVIHQ 135
Query: 171 PAEE-GGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGK 229
PAEE GGAK M++ G L+ V+ + G+HV S G V RPG FF+ + GK
Sbjct: 136 PAEEVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYRPGYVQTGRAFFKLKVQGK 195
Query: 230 GGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTI 289
GGH + P D IVA S + +LQ +VSR P ++ V+T+ F+G G FN+I D V I
Sbjct: 196 GGHGSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVTIGSFDGKGQFNVIKDVVEI 255
Query: 290 GGTFRAFSKESIIQLKQRIEEVVMKQASVQRCNATVTFDDKSFYPVTVNNKNLHEHFQKV 349
G R + + +++ I+ + + T+ ++D YP N+ E+ K
Sbjct: 256 EGDVRGLTDATKATIEKEIKRLSKGLEDMYGVTCTLEYNDD--YPALYNDPEFTEYVAKT 313
Query: 350 AADM---LGVQNIKENRPLMGTEDFSFFAEAIPGYFYYLGMNDETKGKFETGHSPYFRVN 406
+ GV+ + P +EDF+++A+ P F Y G E G+ H P F ++
Sbjct: 314 LKEANLDFGVEMCEPQPP---SEDFAYYAKERPSAFIYTGAAVEN-GEIYPHHHPKFNIS 369
Query: 407 EDALPYGAALHASLATRYL 425
E +L A ++ YL
Sbjct: 370 EKSLLISAEAVGTVVLDYL 388
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYK----FPVAVTGVVGYIGTGQP 105
Y + R I + G + ET + G P + F GVV + TG+P
Sbjct: 49 YQLALGRDVIDADSRXGLPDEETLARAFERAREQGAPERWLPAFEGGFAGVVATLDTGRP 108
Query: 106 -PFVALRADMDALAMEESVEWEHK-------SKVPGKMHACGHDAHVAMLLGAAKMLQVF 157
P +A R D DAL + E + H+ S G HACGHD H A+ LG A +L+ +
Sbjct: 109 GPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTAIGLGLAHVLKQY 168
Query: 158 RHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLA 217
++ G I L+FQPAEEG GA+ + AG +++V+ +H+ + P GTV G
Sbjct: 169 AAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHIGTGVPAGTVVC-GGDNFX 227
Query: 218 AGGFFEAVINGKGGHA 233
A F+ +G HA
Sbjct: 228 ATTKFDVQFSGVAAHA 243
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 131/296 (44%), Gaps = 41/296 (13%)
Query: 38 KFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVA--VTG 95
+ LD+ + + Y + I +IHE PELG +E S+ + L + + +A TG
Sbjct: 6 QILDYIETNK--YSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATG 63
Query: 96 VVGYIGTG-QPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHD-AHVAMLLGAAKM 153
+ +G P + A+ DAL PG HACGH+ A +LGA +
Sbjct: 64 FIATYDSGLDGPAIGFLAEYDAL--------------PGLGHACGHNIIGTASVLGAIGL 109
Query: 154 LQVFRHEIKGTIVLVFQPAEEGG--GGAK-KMLDAGALENVEAIFGLHVSSLFPVGTVAS 210
QV +I G +V++ PAEEGG G AK + AG ++ ++ +H P G
Sbjct: 110 KQVID-QIGGKVVVLGCPAEEGGENGSAKASYVKAGVIDQIDIALXIH-----P-GNETY 162
Query: 211 RPGPTLAAGGFFEAVINGKGGHAAIPQ----HTIDPIVAASNVIVSLQHLVSREADPLDS 266
+ TLA + GK HA+ + +D ++ N + L+ + + D
Sbjct: 163 KTIDTLAV-DVLDVKFYGKSAHASENADEALNALDAXISYFNGVAQLRQHIKK-----DQ 216
Query: 267 QVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVVMKQASVQRCN 322
+V V +GG A NIIPD RA +++ + L +++ ++ A C+
Sbjct: 217 RVHGVI-LDGGKAANIIPDYTHARFYTRAXTRKELDILTEKVNQIARGAAIQTGCD 271
>pdb|3RZA|A Chain A, Crystal Structure Of A Tripeptidase (Sav1512) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 2.10 A
Resolution
pdb|3RZA|B Chain B, Crystal Structure Of A Tripeptidase (Sav1512) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 2.10 A
Resolution
Length = 396
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 79/195 (40%), Gaps = 22/195 (11%)
Query: 145 AMLLGAAKMLQVFRHEI--KGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSL 202
A L ++LQV + + G I V EE G K L++ E ++A FG + +
Sbjct: 132 AGLAAXLEVLQVIKEQQIPHGQIQFVITVGEESGLIGAKELNS---ELLDADFGYAIDAS 188
Query: 203 FPVGT-VASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA 261
VGT V P L A I GK HA+ P+ + I A+ I SR
Sbjct: 189 ADVGTTVVGAPTQXL-----ISAKIIGKTAHASTPKEGVSAINIAAKAI-------SRXK 236
Query: 262 DPLDSQVLT--VAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVVMKQASVQ 319
++ T + KF GG A NI+ D V + R+ E I + +V AS
Sbjct: 237 LGQVDEITTANIGKFHGGSATNIVADEVILEAEARSHDPERIKTQVKHXTDVFETTASEL 296
Query: 320 RCNATVTFDDKSFYP 334
A VT + YP
Sbjct: 297 GGKAEVTVEQS--YP 309
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 145 AMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGG-GAKKMLDAGALENVEAIFGLHVSSLF 203
A++L K+L+ + GTI ++F EE G G++ ++ EA +V S
Sbjct: 125 AVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQE------EAKLADYVLSFE 178
Query: 204 PVGTVASRPGPTLAAGG--FFEAVINGKGGHA-AIPQHTIDPIVAASNVIVSLQHLVSRE 260
P T A +L G + + I GK HA A P+ ++ +V AS++++ + + +
Sbjct: 179 P--TSAGDEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMN-IDDK 235
Query: 261 ADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKE----SIIQLKQRIEEVVMKQA 316
A L T+AK G NIIP S T+ R E ++ L++R ++ + +A
Sbjct: 236 AKNLRFN-WTIAK--AGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEA 292
Query: 317 SVQ 319
V+
Sbjct: 293 DVK 295
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 225 VINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREAD----PLDSQVLTVAKFEGGGAF 280
+ GK GH A P I+P+ + ++ L V E + P Q+ + G GA
Sbjct: 190 TVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNING--GTGAT 247
Query: 281 NIIPDSVTIGGTFRAFSKESIIQLKQRIEEVVMKQA 316
N+IP + + FR ++ + LKQR+ ++ K
Sbjct: 248 NVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHG 283
>pdb|3GB0|A Chain A, Crystal Structure Of Aminopeptidase Pept (Np_980509.1)
From Bacillus Cereus Atcc 10987 At 2.04 A Resolution
Length = 373
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 13/138 (9%)
Query: 163 GTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFF 222
GTI + EE G K LD E + A +G + S VG + PT A
Sbjct: 131 GTIEFIITVGEESGLVGAKALD---RERITAKYGYALDSDGKVGEIVV-AAPTQAK---V 183
Query: 223 EAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVL-TVAKFEGGGAFN 281
A+I GK HA + P S + ++ + + +DS+ + +FEGG N
Sbjct: 184 NAIIRGKTAHAGVA-----PEKGVSAITIAAKAIAKXPLGRIDSETTANIGRFEGGTQTN 238
Query: 282 IIPDSVTIGGTFRAFSKE 299
I+ D V I R+ E
Sbjct: 239 IVCDHVQIFAEARSLINE 256
>pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3IC1|B Chain B, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3ISZ|A Chain A, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|3ISZ|B Chain B, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 377
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 226 INGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREAD-------PLDSQVLTVAKFEGGG 278
I G GH A P +PI A+ + LQ L + + D P Q+ + G G
Sbjct: 188 IQGIQGHVAYPHLAENPIHKAA---LFLQELTTYQWDKGNEFFPPTSLQIANI--HAGTG 242
Query: 279 AFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEVVMKQ 315
+ N+IP + I R ++ + +KQ++ E++ K
Sbjct: 243 SNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEKH 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,762,174
Number of Sequences: 62578
Number of extensions: 529181
Number of successful extensions: 1317
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1296
Number of HSP's gapped (non-prelim): 13
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)