Query 013443
Match_columns 443
No_of_seqs 334 out of 1711
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:40:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 52.7 6.4 0.00022 28.9 1.8 28 150-177 18-45 (56)
2 2dkt_A Ring finger and CHY zin 51.7 5.4 0.00018 34.9 1.6 47 145-191 77-127 (143)
3 3j21_g 50S ribosomal protein L 39.5 16 0.00056 26.2 2.2 28 150-177 13-40 (51)
4 1wfk_A Zinc finger, FYVE domai 38.8 11 0.00037 30.0 1.3 26 150-175 8-35 (88)
5 1joc_A EEA1, early endosomal a 37.1 14 0.00046 31.3 1.8 24 152-175 70-95 (125)
6 1dvp_A HRS, hepatocyte growth 33.2 15 0.00052 33.8 1.6 25 152-176 162-188 (220)
7 1vfy_A Phosphatidylinositol-3- 31.5 13 0.00044 28.3 0.7 23 153-175 13-37 (73)
8 1x4u_A Zinc finger, FYVE domai 29.4 15 0.00052 28.6 0.7 24 152-175 15-40 (84)
9 2yw8_A RUN and FYVE domain-con 27.8 16 0.00056 28.4 0.7 25 151-175 19-45 (82)
10 1z2q_A LM5-1; membrane protein 27.3 17 0.00058 28.4 0.7 25 151-175 21-47 (84)
11 3zyq_A Hepatocyte growth facto 22.6 23 0.00077 32.9 0.7 24 152-175 165-190 (226)
12 2pg3_A Queuosine biosynthesis 21.4 23 0.00077 32.3 0.4 19 160-178 190-208 (232)
13 3t7l_A Zinc finger FYVE domain 20.9 26 0.0009 27.7 0.7 25 151-175 20-46 (90)
14 1y02_A CARP2, FYVE-ring finger 20.8 23 0.0008 29.8 0.3 24 152-175 20-45 (120)
15 3u5e_m 60S ribosomal protein L 20.5 45 0.0015 27.8 2.1 25 151-175 93-119 (128)
16 1tac_A TAT protein; transcript 20.1 32 0.0011 27.2 1.0 13 152-171 25-37 (86)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=52.67 E-value=6.4 Score=28.90 Aligned_cols=28 Identities=29% Similarity=0.599 Sum_probs=23.9
Q ss_pred ceeeccccccccCCCCccCCcCCccccc
Q 013443 150 KIKYCDTCMLYRPPRCSHCSICNNCVER 177 (443)
Q Consensus 150 ~~kyC~tC~i~RPpRs~HCs~C~~CV~r 177 (443)
..+.|..|...-|+|+..|+.|+..-+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 3578999999999999999999866544
No 2
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=51.74 E-value=5.4 Score=34.88 Aligned_cols=47 Identities=26% Similarity=0.569 Sum_probs=34.4
Q ss_pred cCeeeceeeccccccccCCC-CccCCcCCcccccC--C-ccCccccceeec
Q 013443 145 NGITVKIKYCDTCMLYRPPR-CSHCSICNNCVERF--D-HHCPWVGQCIGL 191 (443)
Q Consensus 145 ng~~v~~kyC~tC~i~RPpR-s~HCs~C~~CV~rf--D-HHCpWv~nCIG~ 191 (443)
.|..+...||..|++|-+.+ .+||..||-|-..- | -||.=-|-|+..
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~ 127 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 127 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeecc
Confidence 35556678999999997664 68999999888752 2 377777777643
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.47 E-value=16 Score=26.20 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=23.8
Q ss_pred ceeeccccccccCCCCccCCcCCccccc
Q 013443 150 KIKYCDTCMLYRPPRCSHCSICNNCVER 177 (443)
Q Consensus 150 ~~kyC~tC~i~RPpRs~HCs~C~~CV~r 177 (443)
..+.|..|...-|+++..|+.|+.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 3578999999999999999999876444
No 4
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=38.77 E-value=11 Score=29.99 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=18.2
Q ss_pred ceeeccccccc--cCCCCccCCcCCccc
Q 013443 150 KIKYCDTCMLY--RPPRCSHCSICNNCV 175 (443)
Q Consensus 150 ~~kyC~tC~i~--RPpRs~HCs~C~~CV 175 (443)
....|..|... --.|-|||+.|++-+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEE
Confidence 34568888752 235889999998743
No 5
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.07 E-value=14 Score=31.32 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=17.0
Q ss_pred eeccccccc--cCCCCccCCcCCccc
Q 013443 152 KYCDTCMLY--RPPRCSHCSICNNCV 175 (443)
Q Consensus 152 kyC~tC~i~--RPpRs~HCs~C~~CV 175 (443)
..|..|... --.|-|||+.||+-|
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEE
Confidence 567777652 235889999998743
No 6
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.23 E-value=15 Score=33.75 Aligned_cols=25 Identities=24% Similarity=0.588 Sum_probs=17.9
Q ss_pred eeccccccc--cCCCCccCCcCCcccc
Q 013443 152 KYCDTCMLY--RPPRCSHCSICNNCVE 176 (443)
Q Consensus 152 kyC~tC~i~--RPpRs~HCs~C~~CV~ 176 (443)
+.|..|... ---|-|||+.||+.+=
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFC 188 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccCCCCCccCCcccccccCCcCCEEC
Confidence 578888642 2358999999987543
No 7
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.50 E-value=13 Score=28.27 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=16.4
Q ss_pred eccccccc--cCCCCccCCcCCccc
Q 013443 153 YCDTCMLY--RPPRCSHCSICNNCV 175 (443)
Q Consensus 153 yC~tC~i~--RPpRs~HCs~C~~CV 175 (443)
-|..|... --.|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 57777642 235899999998744
No 8
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.35 E-value=15 Score=28.65 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=16.8
Q ss_pred eeccccccc--cCCCCccCCcCCccc
Q 013443 152 KYCDTCMLY--RPPRCSHCSICNNCV 175 (443)
Q Consensus 152 kyC~tC~i~--RPpRs~HCs~C~~CV 175 (443)
..|..|... --.|-|||+.|++-+
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEE
Confidence 467777642 346899999998743
No 9
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.79 E-value=16 Score=28.35 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=17.6
Q ss_pred eeeccccccc--cCCCCccCCcCCccc
Q 013443 151 IKYCDTCMLY--RPPRCSHCSICNNCV 175 (443)
Q Consensus 151 ~kyC~tC~i~--RPpRs~HCs~C~~CV 175 (443)
...|..|... --.|-|||+.||+-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 3568888642 235899999998744
No 10
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=27.29 E-value=17 Score=28.41 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=17.7
Q ss_pred eeeccccccc--cCCCCccCCcCCccc
Q 013443 151 IKYCDTCMLY--RPPRCSHCSICNNCV 175 (443)
Q Consensus 151 ~kyC~tC~i~--RPpRs~HCs~C~~CV 175 (443)
...|..|... --.|-|||+.|++-+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccchhcccccCCCcEE
Confidence 4578888653 235899999998744
No 11
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.57 E-value=23 Score=32.89 Aligned_cols=24 Identities=25% Similarity=0.728 Sum_probs=17.1
Q ss_pred eecccccc-c-cCCCCccCCcCCccc
Q 013443 152 KYCDTCML-Y-RPPRCSHCSICNNCV 175 (443)
Q Consensus 152 kyC~tC~i-~-RPpRs~HCs~C~~CV 175 (443)
..|..|.. + ---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 46888873 1 223789999999754
No 12
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=21.35 E-value=23 Score=32.35 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=15.2
Q ss_pred ccCCCCccCCcCCcccccC
Q 013443 160 YRPPRCSHCSICNNCVERF 178 (443)
Q Consensus 160 ~RPpRs~HCs~C~~CV~rf 178 (443)
+.+.|..||-.|+.|++|.
T Consensus 190 ~~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 190 YNGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TTSCCTTTTSCSHHHHHHH
T ss_pred cCCCCCCcCCcCHhHHHHH
Confidence 4566668999999999874
No 13
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=20.94 E-value=26 Score=27.69 Aligned_cols=25 Identities=24% Similarity=0.591 Sum_probs=17.4
Q ss_pred eeeccccccc--cCCCCccCCcCCccc
Q 013443 151 IKYCDTCMLY--RPPRCSHCSICNNCV 175 (443)
Q Consensus 151 ~kyC~tC~i~--RPpRs~HCs~C~~CV 175 (443)
...|..|... --.|-|||+.|+.-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 4568888742 234889999998744
No 14
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.83 E-value=23 Score=29.83 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=16.7
Q ss_pred eeccccccc--cCCCCccCCcCCccc
Q 013443 152 KYCDTCMLY--RPPRCSHCSICNNCV 175 (443)
Q Consensus 152 kyC~tC~i~--RPpRs~HCs~C~~CV 175 (443)
..|..|... --.|-|||+.||+.+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred CcccCcCCccccccccccCCCCCCee
Confidence 457777642 245899999998743
No 15
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=20.50 E-value=45 Score=27.75 Aligned_cols=25 Identities=28% Similarity=0.760 Sum_probs=21.7
Q ss_pred eeeccccccccCCCCccCCc--CCccc
Q 013443 151 IKYCDTCMLYRPPRCSHCSI--CNNCV 175 (443)
Q Consensus 151 ~kyC~tC~i~RPpRs~HCs~--C~~CV 175 (443)
.+.|..|...-|+|+..|+. |+..-
T Consensus 93 ~~ic~~~~~~~~~~~~~~~~~~c~~~~ 119 (128)
T 3u5e_m 93 KSVCRKCYARLPPRATNCRKRKCGHTN 119 (128)
T ss_dssp CEEETTTCCEECTTCSSCSCTTTTSCC
T ss_pred eEeeccccccCCchhhccchhhCCCcc
Confidence 58999999999999999994 87643
No 16
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=20.15 E-value=32 Score=27.22 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=8.1
Q ss_pred eeccccccccCCCCccCCcC
Q 013443 152 KYCDTCMLYRPPRCSHCSIC 171 (443)
Q Consensus 152 kyC~tC~i~RPpRs~HCs~C 171 (443)
=||..| ++||.+|
T Consensus 25 CyCKkC-------c~HCq~C 37 (86)
T 1tac_A 25 AHAKKS-------AYHSQVA 37 (86)
T ss_dssp SSTTTT-------TTTCCCS
T ss_pred ceecch-------hhhhhHH
Confidence 466666 5677665
Done!