Query 013443
Match_columns 443
No_of_seqs 334 out of 1711
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 10:40:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013443.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013443hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 68.0 1.2 8.7E-05 30.9 2.0 24 150-173 18-41 (56)
2 d2pg3a1 c.26.2.1 (A:1-230) Que 55.8 1.3 9.4E-05 38.3 0.4 25 151-177 182-206 (230)
3 d2dkta2 g.93.1.1 (A:82-137) RI 49.4 2.9 0.00021 29.0 1.3 38 153-190 4-45 (56)
4 d1vfya_ g.50.1.1 (A:) vps27p p 43.3 4 0.00029 28.9 1.3 23 154-176 8-32 (67)
5 d2dmda2 g.37.1.1 (A:8-33) Zinc 41.5 3.2 0.00023 23.7 0.4 14 166-179 2-15 (26)
6 d1joca1 g.50.1.1 (A:1348-1411) 39.2 6.1 0.00044 27.6 1.7 25 152-176 9-35 (64)
7 d1wfka_ g.50.1.1 (A:) Zinc fin 38.3 5.1 0.00037 30.1 1.3 26 151-176 9-36 (88)
8 d2dkta2 g.93.1.1 (A:82-137) RI 37.3 2.9 0.00021 29.0 -0.3 31 152-182 18-54 (56)
9 d1dvpa2 g.50.1.1 (A:149-220) H 36.7 6.5 0.00048 28.2 1.6 25 152-176 14-40 (72)
10 d2adra2 g.37.1.1 (A:131-161) A 36.6 3.1 0.00023 25.1 -0.2 14 166-179 2-15 (31)
11 d1njqa_ g.37.1.3 (A:) SUPERMAN 35.8 5.2 0.00038 25.3 0.8 13 162-174 2-14 (37)
12 d2c6aa1 g.41.11.1 (A:290-335) 33.4 8.2 0.0006 25.4 1.5 20 152-171 14-33 (46)
13 d2cr8a1 g.41.11.1 (A:8-48) MDM 26.4 13 0.00094 23.8 1.5 19 153-171 6-24 (41)
14 d1tota1 g.44.1.6 (A:1-52) CREB 22.8 10 0.00075 25.6 0.5 22 151-173 6-27 (52)
15 d1kf6c_ f.21.2.2 (C:) Fumarate 22.2 1.3E+02 0.0095 23.6 7.3 21 229-249 57-77 (130)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=67.95 E-value=1.2 Score=30.88 Aligned_cols=24 Identities=29% Similarity=0.710 Sum_probs=21.5
Q ss_pred ceeeccccccccCCCCccCCcCCc
Q 013443 150 KIKYCDTCMLYRPPRCSHCSICNN 173 (443)
Q Consensus 150 ~~kyC~tC~i~RPpRs~HCs~C~~ 173 (443)
..+.|..|...-|+|+..|+.|+.
T Consensus 18 ~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 18 LKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhHHHhhccccCCccccccccCCC
Confidence 458899999999999999998875
No 2
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=55.77 E-value=1.3 Score=38.28 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=20.9
Q ss_pred eeeccccccccCCCCccCCcCCccccc
Q 013443 151 IKYCDTCMLYRPPRCSHCSICNNCVER 177 (443)
Q Consensus 151 ~kyC~tC~i~RPpRs~HCs~C~~CV~r 177 (443)
...-.+| |+|.|.+||-.|..|++|
T Consensus 182 ~~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 182 RYHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hhccCCC--CCCCCCCCCCCCHhHHHH
Confidence 3455677 788899999999999998
No 3
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.43 E-value=2.9 Score=29.03 Aligned_cols=38 Identities=34% Similarity=0.812 Sum_probs=17.3
Q ss_pred eccccccccCC-CCccCCcCCcccccC--C-ccCccccceee
Q 013443 153 YCDTCMLYRPP-RCSHCSICNNCVERF--D-HHCPWVGQCIG 190 (443)
Q Consensus 153 yC~tC~i~RPp-Rs~HCs~C~~CV~rf--D-HHCpWv~nCIG 190 (443)
||..|++|--. ..+||..||-|-..- | -||.=-+.|+.
T Consensus 4 fC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~ 45 (56)
T d2dkta2 4 YCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 45 (56)
T ss_dssp ECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred ECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccC
Confidence 55555555222 235555555554321 1 24555555543
No 4
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.30 E-value=4 Score=28.91 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=16.2
Q ss_pred cccccc--ccCCCCccCCcCCcccc
Q 013443 154 CDTCML--YRPPRCSHCSICNNCVE 176 (443)
Q Consensus 154 C~tC~i--~RPpRs~HCs~C~~CV~ 176 (443)
|..|+. -.-.|-|||+.||+-+=
T Consensus 8 C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 8 CMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp CTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred cccCCCcccCcccccccccCCCEec
Confidence 777764 23458899999997554
No 5
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.48 E-value=3.2 Score=23.75 Aligned_cols=14 Identities=36% Similarity=1.089 Sum_probs=11.9
Q ss_pred ccCCcCCcccccCC
Q 013443 166 SHCSICNNCVERFD 179 (443)
Q Consensus 166 ~HCs~C~~CV~rfD 179 (443)
|.|.+|++|-.|-|
T Consensus 2 hkc~~c~kcfsrkd 15 (26)
T d2dmda2 2 HKCEVCGKCFSRKD 15 (26)
T ss_dssp CCBTTTTBCCCCHH
T ss_pred CccchhhhHhcchh
Confidence 67999999988766
No 6
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.15 E-value=6.1 Score=27.65 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=16.8
Q ss_pred eecccccc--ccCCCCccCCcCCcccc
Q 013443 152 KYCDTCML--YRPPRCSHCSICNNCVE 176 (443)
Q Consensus 152 kyC~tC~i--~RPpRs~HCs~C~~CV~ 176 (443)
+-|..|.. ----|-|||+.||+-+=
T Consensus 9 ~~C~~C~~~F~~~~rrHHCR~CG~v~C 35 (64)
T d1joca1 9 QNCMACGKGFSVTVRRHHCRQCGNIFC 35 (64)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CcCcCcCCcccCCccccchhhhCCeec
Confidence 45777753 22347899999998553
No 7
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.28 E-value=5.1 Score=30.05 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=18.4
Q ss_pred eeecccccc--ccCCCCccCCcCCcccc
Q 013443 151 IKYCDTCML--YRPPRCSHCSICNNCVE 176 (443)
Q Consensus 151 ~kyC~tC~i--~RPpRs~HCs~C~~CV~ 176 (443)
...|..|+. ----|-|||+.|++.+=
T Consensus 9 ~s~C~~C~~~Fs~~~rrhhCr~CG~vfC 36 (88)
T d1wfka_ 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFC 36 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEE
T ss_pred cCcCcccCchhccccccccccccChhhC
Confidence 456888874 23457899999998543
No 8
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.35 E-value=2.9 Score=29.03 Aligned_cols=31 Identities=32% Similarity=0.806 Sum_probs=21.7
Q ss_pred eecccccccc---CCCCccCCcCCccccc--CC-ccC
Q 013443 152 KYCDTCMLYR---PPRCSHCSICNNCVER--FD-HHC 182 (443)
Q Consensus 152 kyC~tC~i~R---PpRs~HCs~C~~CV~r--fD-HHC 182 (443)
-.|..|.+=| ..--.||..|+-|+.. +| |.|
T Consensus 18 yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~l~~~H~C 54 (56)
T d2dkta2 18 YHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKC 54 (56)
T ss_dssp EEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCC
T ss_pred ccCCCCCceeecCCccccccCccccccCcccCCCccc
Confidence 3466665544 5567899999999965 34 666
No 9
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=36.66 E-value=6.5 Score=28.20 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=17.7
Q ss_pred eecccccc--ccCCCCccCCcCCcccc
Q 013443 152 KYCDTCML--YRPPRCSHCSICNNCVE 176 (443)
Q Consensus 152 kyC~tC~i--~RPpRs~HCs~C~~CV~ 176 (443)
..|..|.. ----|-|||+.|++.+=
T Consensus 14 ~~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 14 RVCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccccCCCcccCccccccccccCCeeC
Confidence 35877864 23458899999998654
No 10
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=36.56 E-value=3.1 Score=25.10 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=12.3
Q ss_pred ccCCcCCcccccCC
Q 013443 166 SHCSICNNCVERFD 179 (443)
Q Consensus 166 ~HCs~C~~CV~rfD 179 (443)
++|.+|+||-.|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 57999999999877
No 11
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=35.81 E-value=5.2 Score=25.33 Aligned_cols=13 Identities=46% Similarity=1.078 Sum_probs=11.0
Q ss_pred CCCCccCCcCCcc
Q 013443 162 PPRCSHCSICNNC 174 (443)
Q Consensus 162 PpRs~HCs~C~~C 174 (443)
|+|.+-|++|++-
T Consensus 2 p~r~~~C~~C~k~ 14 (37)
T d1njqa_ 2 PPRSYTCSFCKRE 14 (37)
T ss_dssp CSSSEECTTTCCE
T ss_pred CCCccCCCCCCCc
Confidence 8899999999863
No 12
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.36 E-value=8.2 Score=25.40 Aligned_cols=20 Identities=40% Similarity=0.893 Sum_probs=17.2
Q ss_pred eeccccccccCCCCccCCcC
Q 013443 152 KYCDTCMLYRPPRCSHCSIC 171 (443)
Q Consensus 152 kyC~tC~i~RPpRs~HCs~C 171 (443)
--|..|+..-||-..||..|
T Consensus 14 WkC~~C~~~N~Pl~ryC~rC 33 (46)
T d2c6aa1 14 WKCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp EECTTTCCEECSSCSSCTTT
T ss_pred ccCccccccCCcchhHhHHH
Confidence 45999999999999998766
No 13
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.43 E-value=13 Score=23.80 Aligned_cols=19 Identities=26% Similarity=0.763 Sum_probs=14.8
Q ss_pred eccccccccCCCCccCCcC
Q 013443 153 YCDTCMLYRPPRCSHCSIC 171 (443)
Q Consensus 153 yC~tC~i~RPpRs~HCs~C 171 (443)
-|..|+..-||=..||..|
T Consensus 6 kC~~C~~~N~Pl~ryC~rC 24 (41)
T d2cr8a1 6 QCTECKKFNSPSKRYCFRC 24 (41)
T ss_dssp ECSSSCCEECSSCCBCTTT
T ss_pred ecCcccccCCcchhHHHHH
Confidence 4888888888888887665
No 14
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.77 E-value=10 Score=25.57 Aligned_cols=22 Identities=27% Similarity=0.824 Sum_probs=16.2
Q ss_pred eeeccccccccCCCCccCCcCCc
Q 013443 151 IKYCDTCMLYRPPRCSHCSICNN 173 (443)
Q Consensus 151 ~kyC~tC~i~RPpRs~HCs~C~~ 173 (443)
+..|..|+..-+.| +||..|..
T Consensus 6 ~~tCd~C~~~i~~R-y~C~~C~D 27 (52)
T d1tota1 6 VYTCNECKHHVETR-WHCTVCED 27 (52)
T ss_dssp CEEETTTTEEESSE-EEESSSSS
T ss_pred EEECcCCCCcCCCc-eECCCCCC
Confidence 35699998765555 89998864
No 15
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=22.18 E-value=1.3e+02 Score=23.61 Aligned_cols=21 Identities=10% Similarity=0.350 Sum_probs=12.3
Q ss_pred hHHHHhhhcchhHHHHHHHHH
Q 013443 229 TIWKAMIKTPASIVLIIYTFI 249 (443)
Q Consensus 229 ~~~~~~~~~~~~i~l~i~~~l 249 (443)
.-|..++++|..+++=+.+++
T Consensus 57 ~~fv~flqnP~vv~lniiaLa 77 (130)
T d1kf6c_ 57 AGFVDFLQNPVIVIINLITLA 77 (130)
T ss_dssp HHHHHHHTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHH
Confidence 345567788866665544443
Done!