BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013444
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 188/322 (58%), Gaps = 20/322 (6%)
Query: 127 IANAAARVCPAVVNLSAPRE--FXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRAL 184
IA+ ++ PAVV++ R+ F IV DG I+T AHVV + H
Sbjct: 16 IADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKH----- 70
Query: 185 PKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMG 244
+V V L++G T+E + + D +DIA++KI+ + LP LG SS+L PG++VVA+G
Sbjct: 71 ---RVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIG 127
Query: 245 CPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAINAGNSGGPLVNIDGEIVGIN 304
P SLQNTVT GIVS R +LGL +Y+QTD IN GNSGGPLVN+DGE++GIN
Sbjct: 128 SPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGIN 187
Query: 305 IMKVAAADGLSFAVPIDSAAKII-----EQFKKNGRVVRPWLGLKMLDLNDMIIAQLKER 359
+KV A G+SFA+P D K + Q K + ++G++M+ L +LK+R
Sbjct: 188 TLKVTA--GISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDR 245
Query: 360 DPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLK 419
FP+V SG + V P +PA G +DV+I +G+ V S ++ +++ + L
Sbjct: 246 HRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVI--KRESTLN 303
Query: 420 VVVQRANDQLVTLTVIPEEANP 441
+VV+R N+ ++ +TVIPEE +P
Sbjct: 304 MVVRRGNEDIM-ITVIPEEIDP 324
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 218 bits (555), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 126/322 (39%), Positives = 188/322 (58%), Gaps = 20/322 (6%)
Query: 127 IANAAARVCPAVVNLSAPRE--FXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRAL 184
IA+ ++ PAVV++ R+ F IV DG I+T AHVV + H
Sbjct: 16 IADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKH----- 70
Query: 185 PKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMG 244
+V V L++G T+E + + D +DIA++KI+ + LP LG SS+L PG++VVA+G
Sbjct: 71 ---RVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIG 127
Query: 245 CPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAINAGNSGGPLVNIDGEIVGIN 304
P SLQNTVT GIVS R +LGL +Y+QTD IN GN+GGPLVN+DGE++GIN
Sbjct: 128 SPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGIN 187
Query: 305 IMKVAAADGLSFAVPIDSAAKII-----EQFKKNGRVVRPWLGLKMLDLNDMIIAQLKER 359
+KV A G+SFA+P D K + Q K + ++G++M+ L +LK+R
Sbjct: 188 TLKVTA--GISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDR 245
Query: 360 DPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLK 419
FP+V SG + V P +PA G +DV+I +G+ V S ++ +++ + L
Sbjct: 246 HRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVI--KRESTLN 303
Query: 420 VVVQRANDQLVTLTVIPEEANP 441
+VV+R N+ ++ +TVIPEE +P
Sbjct: 304 MVVRRGNEDIM-ITVIPEEIDP 324
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 184/319 (57%), Gaps = 21/319 (6%)
Query: 127 IANAAARVCPAVVNLSA--PREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRAL 184
IA+ + PAVV + F +V ADG I+T AHVV D
Sbjct: 17 IADVVEKTAPAVVYIEILDRHPFLGREVPISNGSGFVVAADGLIVTNAHVVAD------- 69
Query: 185 PKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMG 244
+ +V V L G T+E V D +DIA ++I +K PLP LG S+ + G++VVAMG
Sbjct: 70 -RRRVRVRLLSGDTYEAVVTAVDPVADIATLRIQTKEPLPTLPLGRSADVRQGEFVVAMG 128
Query: 245 CPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAINAGNSGGPLVNIDGEIVGIN 304
P +LQNT+T+GIVS R + DLGL EY+QTD AI+ GN+GGPLVN+DGE++G+N
Sbjct: 129 SPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQTDAAIDFGNAGGPLVNLDGEVIGVN 188
Query: 305 IMKVAAADGLSFAVPIDSAAKIIEQFKKNGRVV------RPWLGLKMLDLNDMIIAQLKE 358
MKV A G+SFA+P D + + + +K R ++G+ ML L+ I+A+L+
Sbjct: 189 TMKVTA--GISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYIGVMMLTLSPSILAELQL 246
Query: 359 RDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPL 418
R+PSFP+V+ GVL+ V GSPAH AG P DV++ + VQ+ ++ E + R L
Sbjct: 247 REPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAV--RTQSQL 304
Query: 419 KVVVQRANDQLVTLTVIPE 437
V ++R + L TL V PE
Sbjct: 305 AVQIRRGRETL-TLYVTPE 322
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 12/205 (5%)
Query: 127 IANAAARVCPAVVNLSAPRE--FXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRAL 184
IA+ ++ PAVV++ R+ F IV DG I+T AHVV + H
Sbjct: 16 IADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKH----- 70
Query: 185 PKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMG 244
+V V L++G T+E + + D +DIA++KI+ + LP LG SS+L PG++VVA+G
Sbjct: 71 ---RVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIG 127
Query: 245 CPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAINAGNSGGPLVNIDGEIVGIN 304
P SLQNTVT GIVS R +LGL +Y+QTD IN GNSGGPLVN+DGE++GIN
Sbjct: 128 SPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGIN 187
Query: 305 IMKVAAADGLSFAVPIDSAAKIIEQ 329
+KV A G+SFA+P D K + +
Sbjct: 188 TLKVTA--GISFAIPSDKIKKFLTE 210
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 12/205 (5%)
Query: 127 IANAAARVCPAVVNLSAPRE--FXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRAL 184
IA+ ++ PAVV++ R+ F IV DG I+T AHVV + H
Sbjct: 33 IADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKH----- 87
Query: 185 PKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMG 244
+V V L++G T+E + + D +DIA++KI+ + LP LG SS+L PG++VVA+G
Sbjct: 88 ---RVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIG 144
Query: 245 CPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAINAGNSGGPLVNIDGEIVGIN 304
P SLQNTVT GIVS R +LGL +Y+QTD IN GNSGGPLVN+DGE++GIN
Sbjct: 145 SPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGIN 204
Query: 305 IMKVAAADGLSFAVPIDSAAKIIEQ 329
+KV A G+SFA+P D K + +
Sbjct: 205 TLKVTA--GISFAIPSDKIKKFLTE 227
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 125/205 (60%), Gaps = 12/205 (5%)
Query: 127 IANAAARVCPAVVNLSAPRE--FXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRAL 184
IA+ ++ PAVV++ R+ F IV DG I+T AHVV + H
Sbjct: 33 IADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKH----- 87
Query: 185 PKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMG 244
+V V L++G T+E + + D +DIA++KI+ + LP LG SS+L PG++VVA+G
Sbjct: 88 ---RVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIG 144
Query: 245 CPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAINAGNSGGPLVNIDGEIVGIN 304
P SLQNTVT GIVS R +LGL +Y+QTD IN GN+GGPLVN+DGE++GIN
Sbjct: 145 SPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGIN 204
Query: 305 IMKVAAADGLSFAVPIDSAAKIIEQ 329
+KV A G+SFA+P D K + +
Sbjct: 205 TLKVTA--GISFAIPSDKIKKFLTE 227
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 158/286 (55%), Gaps = 27/286 (9%)
Query: 161 IVDADGTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSK 220
I+D G I+T HV+ D ++ V LQDGR FE ++ +D +D+A++KIN+
Sbjct: 43 IMDQRGYIITNKHVINDAD--------QIIVALQDGRVFEALLVGSDSLTDLAVLKINAT 94
Query: 221 TPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQ 279
LP + GD V+A+G P++L T+T GI+S R +GL R+ +LQ
Sbjct: 95 GGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQ 150
Query: 280 TDCAINAGNSGGPLVNIDGEIVGINIMKVAAA------DGLSFAVPIDSAAKIIEQFKKN 333
TD +IN GNSGG LVN GE++GIN + + +G+ FA+P A KI+++ ++
Sbjct: 151 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 210
Query: 334 GRVVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVI 393
GRV+R ++G+ + IA L + ++ G++V V+P PA AG +D++I
Sbjct: 211 GRVIRGYIGIGGRE-----IAPLHAQGGGIDQLQ-GIVVNEVSPDGPAANAGIQVNDLII 264
Query: 394 KFDGKPVQSITEIIEIMGD-RVGEPLKVVVQRANDQLVTLTVIPEE 438
D KP S E ++ + + R G + VVV R + QL TL V +E
Sbjct: 265 SVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQL-TLQVTIQE 309
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 156/288 (54%), Gaps = 32/288 (11%)
Query: 161 IVDADGTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSK 220
I+D G I+T HV+ D ++ V LQDGR FE ++ +D +D+A++KIN+
Sbjct: 69 IMDQRGYIITNKHVINDAD--------QIIVALQDGRVFEALLVGSDSLTDLAVLKINAT 120
Query: 221 TPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQ 279
LP + GD V+A+G P++L T+T GI+S R +GL R+ +LQ
Sbjct: 121 GGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQ 176
Query: 280 TDCAINAGNSGGPLVNIDGEIVGINIMKVAAA------DGLSFAVPIDSAAKIIEQFKKN 333
TD +IN GN GG LVN GE++GIN + + +G+ FA+P A KI+++ ++
Sbjct: 177 TDASINPGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
Query: 334 GRVVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVI 393
GRV+R ++G+ + IA L + ++ G++V V+P PA AG +D++I
Sbjct: 237 GRVIRGYIGIGGRE-----IAPLHAQGGGIDQLQ-GIVVNEVSPDGPAANAGIQVNDLII 290
Query: 394 KFDGKP----VQSITEIIEIMGDRVGEPLKVVVQRANDQLVTLTVIPE 437
D KP ++++ ++ EI R G + VVV R + QL I E
Sbjct: 291 SVDNKPAISALETMAQVAEI---RPGSVIPVVVMRDDKQLTLQVTIQE 335
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 154/286 (53%), Gaps = 27/286 (9%)
Query: 161 IVDADGTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSK 220
I D G I+T HV+ D ++ V LQDGR FE ++ +D +D+A++KIN+
Sbjct: 43 IXDQRGYIITNKHVINDAD--------QIIVALQDGRVFEALLVGSDSLTDLAVLKINAT 94
Query: 221 TPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQ 279
LP + GD V+A+G P++L T+T GI+S R +GL R+ +LQ
Sbjct: 95 GGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQ 150
Query: 280 TDCAINAGNSGGPLVNIDGEIVGINIMKVAAA------DGLSFAVPIDSAAKIIEQFKKN 333
TD +IN GNSGG LVN GE+ GIN + + +G+ FA+P A KI ++ ++
Sbjct: 151 TDASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRD 210
Query: 334 GRVVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVI 393
GRV+R ++G+ + IA L + ++ G++V V+P PA AG +D++I
Sbjct: 211 GRVIRGYIGIGGRE-----IAPLHAQGGGIDQLQ-GIVVNEVSPDGPAANAGIQVNDLII 264
Query: 394 KFDGKPVQSITEIIEIMGD-RVGEPLKVVVQRANDQLVTLTVIPEE 438
D KP S E + + + R G + VVV R + QL TL V +E
Sbjct: 265 SVDNKPAISALETXDQVAEIRPGSVIPVVVXRDDKQL-TLQVTIQE 309
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 156/286 (54%), Gaps = 27/286 (9%)
Query: 161 IVDADGTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSK 220
I+D G I+T HV+ D ++ V LQDGR FE ++ +D +D+A++ I +
Sbjct: 48 IMDQRGYIITNKHVIND--------ADQIIVALQDGRVFEALLVGSDSLTDLAVLIIKAT 99
Query: 221 TPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQ 279
LP + GD V+A+G P++L T+T GI+S R +GL R+ +LQ
Sbjct: 100 GGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQ 155
Query: 280 TDCAINAGNSGGPLVNIDGEIVGINIMKVAAA------DGLSFAVPIDSAAKIIEQFKKN 333
TD +IN GNSGG LVN GE++GIN + + +G+ FA+P A KI+++ ++
Sbjct: 156 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 215
Query: 334 GRVVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVI 393
GRV+R ++G+ + IA L + ++ G++V V+P PA AG +D++I
Sbjct: 216 GRVIRGYIGIGGRE-----IAPLHAQGGGIDQLQ-GIVVNEVSPDGPAANAGIQVNDLII 269
Query: 394 KFDGKPVQSITEIIEIMGD-RVGEPLKVVVQRANDQLVTLTVIPEE 438
D KP S E ++ + + R G + VVV R + QL TL V +E
Sbjct: 270 SVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQL-TLQVTIQE 314
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 141/275 (51%), Gaps = 24/275 (8%)
Query: 161 IVDAD-GTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINS 219
I+DAD G ++T HVV + + V L DGR F+ ++ D SDIA+++I +
Sbjct: 92 IIDADKGYVVTNNHVVDNAT--------VIKVQLSDGRKFDAKMVGKDPRSDIALIQIQN 143
Query: 220 KTPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRRE-YL 278
L A K+ S L GD+ VA+G P L TVT+GIVS + R GL E ++
Sbjct: 144 PKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFI 199
Query: 279 QTDCAINAGNSGGPLVNIDGEIVGINIMKVA---AADGLSFAVPIDSAAKIIEQFKKNGR 335
QTD AIN GNSGG LVN++GE++GIN +A G+ FA+P + + Q + G+
Sbjct: 200 QTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQ 259
Query: 336 VVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKF 395
V R LG+ +LN + +K + + G V V P S A AG DV+
Sbjct: 260 VKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 396 DGKPVQSITEIIEIMGDR-VGEPLKVVVQRANDQL 429
+GKP+ S + +G VG L + + R Q+
Sbjct: 314 NGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV 348
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 369 GVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQ 428
GV+V V G+PA G DV+I + + V++I E+ +++ D L + +QR +
Sbjct: 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL-DSKPSVLALNIQRGDST 442
Query: 429 LVTL 432
+ L
Sbjct: 443 IYLL 446
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 149/282 (52%), Gaps = 30/282 (10%)
Query: 165 DGTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+G I+T HV+ + + VTLQDGR + ++ D +D+A++KI++K L
Sbjct: 88 NGVIITNDHVIRN--------ASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKN-LK 138
Query: 225 AAKLGTSSKLCPGDWVVAMGCPHSLQN-----TVTAGIVSCVDRKSSDLGLGGMRREYLQ 279
+ +G S KL GD+VVA+G P L + + T GIVS + R SDL + G+ ++Q
Sbjct: 139 SLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR--SDLNIEGVEN-FIQ 195
Query: 280 TDCAINAGNSGGPLVNIDGEIVGIN---IMKVAAADGLSFAVPIDSAAKIIEQFKKNGRV 336
TD AIN GNSGG LVN GE++GIN + G+ FA+PI+ + +Q K G +
Sbjct: 196 TDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFGSI 255
Query: 337 VRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKFD 396
R +G+ + L + + +P G LV V P SPA LAG D++ + +
Sbjct: 256 HRGLMGIFVQHLTPELAQAM-----GYPEDFQGALVSQVNPNSPAELAGLKAGDIITQIN 310
Query: 397 GKPVQSITEI---IEIMGDRVGEPLKVVVQRANDQLVTLTVI 435
+ T++ I ++ RVG +K++V+R N L V+
Sbjct: 311 DTKITQATQVKTTISLL--RVGSTVKIIVERDNKPLTLSAVV 350
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 141/275 (51%), Gaps = 24/275 (8%)
Query: 161 IVDAD-GTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINS 219
I+DAD G ++T HVV + + V L DGR F+ ++ D SDIA+++I +
Sbjct: 92 IIDADKGYVVTNNHVVDNAT--------VIKVQLSDGRKFDAKMVGKDPRSDIALIQIQN 143
Query: 220 KTPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRRE-YL 278
L A K+ S L GD+ VA+G P L TVT+GIVS + R GL E ++
Sbjct: 144 PKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFI 199
Query: 279 QTDCAINAGNSGGPLVNIDGEIVGINIMKVA---AADGLSFAVPIDSAAKIIEQFKKNGR 335
QTD AIN GNSGG LVN++GE++GIN +A G+ FA+P + + Q + G+
Sbjct: 200 QTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQ 259
Query: 336 VVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKF 395
V R LG+ +LN + +K + + G V V P S A AG DV+
Sbjct: 260 VKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 396 DGKPVQSITEIIEIMGDR-VGEPLKVVVQRANDQL 429
+GKP+ S + +G VG L + + R Q+
Sbjct: 314 NGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV 348
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 369 GVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQ 428
GV+V V G+PA G DV+I + + V++I E+ +++ D L + +QR +
Sbjct: 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL-DSKPSVLALNIQRGDST 442
Query: 429 LVTL 432
+ L
Sbjct: 443 IYLL 446
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 149/282 (52%), Gaps = 30/282 (10%)
Query: 165 DGTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+G I+T HV+ + + VTLQDGR + ++ D +D+A++KI++K L
Sbjct: 88 NGVIITNDHVIRN--------ASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKN-LK 138
Query: 225 AAKLGTSSKLCPGDWVVAMGCPHSLQN-----TVTAGIVSCVDRKSSDLGLGGMRREYLQ 279
+ +G S KL GD+VVA+G P L + + T GIVS + R SDL + G+ ++Q
Sbjct: 139 SLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR--SDLNIEGVEN-FIQ 195
Query: 280 TDCAINAGNSGGPLVNIDGEIVGIN---IMKVAAADGLSFAVPIDSAAKIIEQFKKNGRV 336
TD AIN GNSGG LVN GE++GIN + G+ FA+PI+ + +Q K G +
Sbjct: 196 TDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFGSI 255
Query: 337 VRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKFD 396
R +G+ + L + + +P G LV V P SPA LAG D++ + +
Sbjct: 256 HRGLMGIFVQHLTPELAQAM-----GYPEDFQGALVSQVNPNSPAELAGLKAGDIITQIN 310
Query: 397 GKPVQSITEI---IEIMGDRVGEPLKVVVQRANDQLVTLTVI 435
+ T++ I ++ RVG +K++V+R N L V+
Sbjct: 311 DTKITQATQVKTTISLL--RVGSTVKIIVERDNKPLTLSAVV 350
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 141/275 (51%), Gaps = 24/275 (8%)
Query: 161 IVDAD-GTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINS 219
I+DAD G ++T HVV + + V L DGR F+ ++ D SDIA+++I +
Sbjct: 92 IIDADKGYVVTNNHVVDNAT--------VIKVQLSDGRKFDAKMVGKDPRSDIALIQIQN 143
Query: 220 KTPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRRE-YL 278
L A K+ S L GD+ VA+G P L TVT+GIVS + R GL E ++
Sbjct: 144 PKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFI 199
Query: 279 QTDCAINAGNSGGPLVNIDGEIVGINIMKVA---AADGLSFAVPIDSAAKIIEQFKKNGR 335
QTD AIN GN+GG LVN++GE++GIN +A G+ FA+P + + Q + G+
Sbjct: 200 QTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQ 259
Query: 336 VVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKF 395
V R LG+ +LN + +K + + G V V P S A AG DV+
Sbjct: 260 VKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 396 DGKPVQSITEIIEIMGDR-VGEPLKVVVQRANDQL 429
+GKP+ S + +G VG L + + R Q+
Sbjct: 314 NGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV 348
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 369 GVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQ 428
GV+V V G+PA G DV+I + + V++I E+ +++ D L + +QR +
Sbjct: 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL-DSKPSVLALNIQRGDST 442
Query: 429 LVTL 432
+ L
Sbjct: 443 IYLL 446
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 149/282 (52%), Gaps = 30/282 (10%)
Query: 165 DGTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+G I+T HV+ + + VTLQDGR + ++ D +D+A++KI++K L
Sbjct: 88 NGVIITNDHVIRN--------ASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKN-LK 138
Query: 225 AAKLGTSSKLCPGDWVVAMGCPHSLQN-----TVTAGIVSCVDRKSSDLGLGGMRREYLQ 279
+ +G S KL GD+VVA+G P L + + T GIVS + R SDL + G+ ++Q
Sbjct: 139 SLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR--SDLNIEGVEN-FIQ 195
Query: 280 TDCAINAGNSGGPLVNIDGEIVGIN---IMKVAAADGLSFAVPIDSAAKIIEQFKKNGRV 336
TD AIN GN+GG LVN GE++GIN + G+ FA+PI+ + +Q K G +
Sbjct: 196 TDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFGSI 255
Query: 337 VRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKFD 396
R +G+ + L + + +P G LV V P SPA LAG D++ + +
Sbjct: 256 HRGLMGIFVQHLTPELAQAM-----GYPEDFQGALVSQVNPNSPAELAGLKAGDIITQIN 310
Query: 397 GKPVQSITEI---IEIMGDRVGEPLKVVVQRANDQLVTLTVI 435
+ T++ I ++ RVG +K++V+R N L V+
Sbjct: 311 DTKITQATQVKTTISLL--RVGSTVKIIVERDNKPLTLSAVV 350
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 141/275 (51%), Gaps = 24/275 (8%)
Query: 161 IVDAD-GTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINS 219
I+DAD G ++T HVV + + V L DGR F+ ++ D SDIA+++I +
Sbjct: 92 IIDADKGYVVTNNHVVDNAT--------VIKVQLSDGRKFDAKMVGKDPRSDIALIQIQN 143
Query: 220 KTPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRRE-YL 278
L A K+ S L GD+ VA+G P L TVT+GIVS + R GL E ++
Sbjct: 144 PKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFI 199
Query: 279 QTDCAINAGNSGGPLVNIDGEIVGINIMKVA---AADGLSFAVPIDSAAKIIEQFKKNGR 335
QTD AIN GN+GG LVN++GE++GIN +A G+ FA+P + + Q + G+
Sbjct: 200 QTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQ 259
Query: 336 VVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKF 395
V R LG+ +LN + +K + + G V V P S A AG DV+
Sbjct: 260 VKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 396 DGKPVQSITEIIEIMGDR-VGEPLKVVVQRANDQL 429
+GKP+ S + +G VG L + + R Q+
Sbjct: 314 NGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV 348
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 369 GVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQ 428
GV+V V G+PA G DV+I + + V++I E+ +++ D L + +QR +
Sbjct: 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL-DSKPSVLALNIQRGDST 442
Query: 429 LVTL 432
+ L
Sbjct: 443 IYLL 446
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 131/244 (53%), Gaps = 20/244 (8%)
Query: 166 GTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPA 225
G +LT HV+ K+ + L DGR F+ ++ +D SDIA+++I + + L
Sbjct: 75 GYVLTNNHVINQAQ--------KISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQ 126
Query: 226 AKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAIN 285
+ S KL GD+ VA+G P L T T+GIVS + R S L L G+ ++QTD +IN
Sbjct: 127 IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR--SGLNLEGLEN-FIQTDASIN 183
Query: 286 AGNSGGPLVNIDGEIVGINIMKVA---AADGLSFAVPIDSAAKIIEQFKKNGRVVRPWLG 342
GNSGG L+N++GE++GIN +A + G+ FA+P + A + +Q G + R LG
Sbjct: 184 RGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLG 243
Query: 343 LKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQS 402
+K +++ I +V+ G V V PGS + AG D++ +GKP+ S
Sbjct: 244 IKGTEMSADIAKAFN------LDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNS 297
Query: 403 ITEI 406
E+
Sbjct: 298 FAEL 301
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 141/275 (51%), Gaps = 24/275 (8%)
Query: 161 IVDAD-GTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINS 219
I+DAD G ++T HVV + + V L DGR F+ ++ D SDIA+++I +
Sbjct: 92 IIDADKGYVVTNNHVVDNAT--------VIKVQLSDGRKFDAKMVGKDPRSDIALIQIQN 143
Query: 220 KTPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRRE-YL 278
L A K+ S L GD+ VA+G P L TVT+GIVS + R GL E ++
Sbjct: 144 PKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFI 199
Query: 279 QTDCAINAGNSGGPLVNIDGEIVGINIMKVA---AADGLSFAVPIDSAAKIIEQFKKNGR 335
QTD AIN GN+GG LVN++GE++GIN +A G+ FA+P + + Q + G+
Sbjct: 200 QTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQ 259
Query: 336 VVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKF 395
V R LG+ +LN + +K + + G V V P S A AG DV+
Sbjct: 260 VKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 396 DGKPVQSITEIIEIMGDR-VGEPLKVVVQRANDQL 429
+GKP+ S + +G VG L + + R Q+
Sbjct: 314 NGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV 348
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 369 GVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQ 428
GV+V V G+PA G DV+I + + V++I E+ +++ D L + +QR +
Sbjct: 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL-DSKPSVLALNIQRGDST 442
Query: 429 LVTL 432
+ L
Sbjct: 443 IYLL 446
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 148/282 (52%), Gaps = 30/282 (10%)
Query: 165 DGTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+G I+T HV+ + + VTLQDGR + ++ D +D+A++KI++K L
Sbjct: 88 NGVIITNDHVIRN--------ASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKN-LK 138
Query: 225 AAKLGTSSKLCPGDWVVAMGCPHSLQN-----TVTAGIVSCVDRKSSDLGLGGMRREYLQ 279
+ +G S KL GD+VVA+G P L + + T GIVS + R SDL + G+ ++Q
Sbjct: 139 SLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR--SDLNIEGVEN-FIQ 195
Query: 280 TDCAINAGNSGGPLVNIDGEIVGIN---IMKVAAADGLSFAVPIDSAAKIIEQFKKNGRV 336
TD AI GNSGG LVN GE++GIN + G+ FA+PI+ + +Q K G +
Sbjct: 196 TDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFGSI 255
Query: 337 VRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKFD 396
R +G+ + L + + +P G LV V P SPA LAG D++ + +
Sbjct: 256 HRGLMGIFVQHLTPELAQAM-----GYPEDFQGALVSQVNPNSPAELAGLKAGDIITQIN 310
Query: 397 GKPVQSITEI---IEIMGDRVGEPLKVVVQRANDQLVTLTVI 435
+ T++ I ++ RVG +K++V+R N L V+
Sbjct: 311 DTKITQATQVKTTISLL--RVGSTVKIIVERDNKPLTLSAVV 350
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 131/244 (53%), Gaps = 20/244 (8%)
Query: 166 GTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPA 225
G +LT HV+ K+ + L DGR F+ ++ +D SDIA+++I + + L
Sbjct: 75 GYVLTNNHVINQAQ--------KISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQ 126
Query: 226 AKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAIN 285
+ S KL GD+ VA+G P L T T+GIVS + R S L L G+ ++QTD +IN
Sbjct: 127 IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR--SGLNLEGLEN-FIQTDASIN 183
Query: 286 AGNSGGPLVNIDGEIVGINIMKVA---AADGLSFAVPIDSAAKIIEQFKKNGRVVRPWLG 342
GN+GG L+N++GE++GIN +A + G+ FA+P + A + +Q G + R LG
Sbjct: 184 RGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLG 243
Query: 343 LKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQS 402
+K +++ I +V+ G V V PGS + AG D++ +GKP+ S
Sbjct: 244 IKGTEMSADIAKAFN------LDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNS 297
Query: 403 ITEI 406
E+
Sbjct: 298 FAEL 301
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 360 DPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLK 419
D + G+ + V GSPA AG DV+I + V SI E+ +++ +P
Sbjct: 355 DGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVL---AAKPAI 411
Query: 420 VVVQ--RANDQLVTL 432
+ +Q R N+ + L
Sbjct: 412 IALQIVRGNESIYLL 426
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 138/275 (50%), Gaps = 24/275 (8%)
Query: 161 IVDAD-GTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINS 219
I+DAD G ++T HVV + + V L DGR F+ + D SDIA+++I +
Sbjct: 92 IIDADKGYVVTNNHVVDNAT--------VIKVQLSDGRKFDAKXVGKDPRSDIALIQIQN 143
Query: 220 KTPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRRE-YL 278
L A K S L GD+ VA+G P L TVT+GIVS + R GL E ++
Sbjct: 144 PKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFI 199
Query: 279 QTDCAINAGNSGGPLVNIDGEIVGINIMKVA---AADGLSFAVPIDSAAKIIEQFKKNGR 335
QTD AIN GNSGG LVN++GE++GIN +A G+ FA+P + + Q + G+
Sbjct: 200 QTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQ 259
Query: 336 VVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKF 395
V R LG+ +LN + K + + G V V P S A AG DV+
Sbjct: 260 VKRGELGIXGTELNSELAKAXK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 396 DGKPVQSITEIIEIMGDR-VGEPLKVVVQRANDQL 429
+GKP+ S + +G VG L + + R Q+
Sbjct: 314 NGKPISSFAALRAQVGTXPVGSKLTLGLLRDGKQV 348
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 369 GVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQ 428
GV+V V G+PA G DV+I + + V++I E+ +++ D L + +QR +
Sbjct: 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL-DSKPSVLALNIQRGDST 442
Query: 429 LVTL 432
+ L
Sbjct: 443 IYLL 446
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 138/275 (50%), Gaps = 24/275 (8%)
Query: 161 IVDAD-GTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINS 219
I+DAD G ++T HVV + + V L DGR F+ + D SDIA+++I +
Sbjct: 92 IIDADKGYVVTNNHVVDNAT--------VIKVQLSDGRKFDAKXVGKDPRSDIALIQIQN 143
Query: 220 KTPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRRE-YL 278
L A K S L GD+ VA+G P L TVT+GIVS + R GL E ++
Sbjct: 144 PKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFI 199
Query: 279 QTDCAINAGNSGGPLVNIDGEIVGINIMKVA---AADGLSFAVPIDSAAKIIEQFKKNGR 335
QTD AIN GN+GG LVN++GE++GIN +A G+ FA+P + + Q + G+
Sbjct: 200 QTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQ 259
Query: 336 VVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKF 395
V R LG+ +LN + K + + G V V P S A AG DV+
Sbjct: 260 VKRGELGIXGTELNSELAKAXK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 396 DGKPVQSITEIIEIMGDR-VGEPLKVVVQRANDQL 429
+GKP+ S + +G VG L + + R Q+
Sbjct: 314 NGKPISSFAALRAQVGTXPVGSKLTLGLLRDGKQV 348
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 369 GVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQ 428
GV+V V G+PA G DV+I + + V++I E+ +++ D L + +QR +
Sbjct: 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL-DSKPSVLALNIQRGDST 442
Query: 429 LVTL 432
+ L
Sbjct: 443 IYLL 446
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 138/275 (50%), Gaps = 24/275 (8%)
Query: 161 IVDAD-GTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINS 219
I+DAD G ++T HVV + + V L DGR F+ + D SDIA+++I +
Sbjct: 92 IIDADKGYVVTNNHVVDNAT--------VIKVQLSDGRKFDAKXVGKDPRSDIALIQIQN 143
Query: 220 KTPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRRE-YL 278
L A K S L GD+ VA+G P L TVT+GIVS + R GL E ++
Sbjct: 144 PKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFI 199
Query: 279 QTDCAINAGNSGGPLVNIDGEIVGINIMKVA---AADGLSFAVPIDSAAKIIEQFKKNGR 335
QTD AIN GN+GG LVN++GE++GIN +A G+ FA+P + + Q + G+
Sbjct: 200 QTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQ 259
Query: 336 VVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKF 395
V R LG+ +LN + K + + G V V P S A AG DV+
Sbjct: 260 VKRGELGIXGTELNSELAKAXK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 396 DGKPVQSITEIIEIMGDR-VGEPLKVVVQRANDQL 429
+GKP+ S + +G VG L + + R Q+
Sbjct: 314 NGKPISSFAALRAQVGTXPVGSKLTLGLLRDGKQV 348
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 369 GVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQ 428
GV+V V G+PA G DV+I + + V++I E+ +++ D L + +QR +
Sbjct: 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL-DSKPSVLALNIQRGDST 442
Query: 429 LVTL 432
+ L
Sbjct: 443 IYLL 446
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 129/250 (51%), Gaps = 25/250 (10%)
Query: 126 TIANAAARVCPAVVNLSAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFH----GS 181
++ AA+V P+VV L I+ A+G ILT HV+ GS
Sbjct: 7 SVEQVAAKVVPSVVXLE-----TDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGS 61
Query: 182 RALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVV 241
P K VT DGRT TV+ AD SDIA+V++ + L LG+SS L G V+
Sbjct: 62 ---PPPKTTVTFSDGRTAPFTVVGADPTSDIAVVRVQGVSGLTPISLGSSSDLRVGQPVL 118
Query: 242 AMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYL---QTDCAINAGNSGGPLVNIDG 298
A+G P L+ TVT GIVS ++R S G G + L QTD AIN GNSGG LVN +
Sbjct: 119 AIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQNTVLDAIQTDAAINPGNSGGALVNXNA 178
Query: 299 EIVGIN----IMKVAAAD------GLSFAVPIDSAAKIIEQFKKNGRVVRPWLGLKMLDL 348
++VG+N + +AD GL FA+P+D A +I ++ G+ LG+++ +
Sbjct: 179 QLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGKASHASLGVQVTND 238
Query: 349 NDMIIAQLKE 358
D + A++ E
Sbjct: 239 KDTLGAKIVE 248
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 148/287 (51%), Gaps = 32/287 (11%)
Query: 172 AHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINS-KTPLPAAKLGT 230
H+V ++H R + VTL D TF+ V+ D D+A+++I++ K L +G
Sbjct: 64 GHIVTNYHVIRG--ASDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGV 121
Query: 231 SSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAINAGNSG 290
S+ L G V A+G P L +T+T G++S + R+ S G ++ +QTD AIN GNSG
Sbjct: 122 SADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSG 181
Query: 291 GPLVNIDGEIVGINIMKVA---AADGLSFAVPIDSAAKIIEQFKKNGRVVRPWLGLKMLD 347
GPL++ G ++GIN + A+ G+ F++P+D+ I++Q + G+V RP LG+K
Sbjct: 182 GPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVTRPILGIKF-- 239
Query: 348 LNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPS-----------DVVIKFD 396
D + QL SGVLV P PA AG + D++ +
Sbjct: 240 APDQSVEQLG---------VSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVN 290
Query: 397 GKPVQSITEIIEIMGD-RVGEPLKVVVQRANDQL---VTLTVIPEEA 439
G V + +++ I+ +VG+ + V V R + + VTL P+E+
Sbjct: 291 GTKVSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKISVTLEPKPDES 337
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 22/219 (10%)
Query: 130 AAARVCPAVVNL---SAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRALPK 186
A R PAVVN+ I+D G I+T HV+ D
Sbjct: 25 AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------A 76
Query: 187 GKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMGCP 246
++ V LQDGR FE ++ +D +D+A++KIN+ LP + GD V+A+G P
Sbjct: 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNP 136
Query: 247 HSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQTDCAINAGNSGGPLVNIDGEIVGINI 305
++L T+T GI+S R +GL R+ +LQTD +IN GNSGG LVN GE++GIN
Sbjct: 137 YNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINT 192
Query: 306 MKVAAA------DGLSFAVPIDSAAKIIEQFKKNGRVVR 338
+ + +G+ FA+P A KI+++ ++GRV+R
Sbjct: 193 LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 231
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 22/219 (10%)
Query: 130 AAARVCPAVVNL---SAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRALPK 186
A R PAVVN+ I+D G I+T HV+ D
Sbjct: 37 AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------A 88
Query: 187 GKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMGCP 246
++ V LQDGR FE ++ +D +D+A++KIN+ LP + GD V+A+G P
Sbjct: 89 DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNP 148
Query: 247 HSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQTDCAINAGNSGGPLVNIDGEIVGINI 305
++L T+T GI+S R +GL R+ +LQTD +IN GNSGG LVN GE++GIN
Sbjct: 149 YNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINT 204
Query: 306 MKVAAA------DGLSFAVPIDSAAKIIEQFKKNGRVVR 338
+ + +G+ FA+P A KI+++ ++GRV+R
Sbjct: 205 LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 243
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 22/219 (10%)
Query: 130 AAARVCPAVVNL---SAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRALPK 186
A R PAVVN+ I+D G I+T HV+ D
Sbjct: 35 AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------A 86
Query: 187 GKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMGCP 246
++ V LQDGR FE ++ +D +D+A++KIN+ LP + GD V+A+G P
Sbjct: 87 DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNP 146
Query: 247 HSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQTDCAINAGNSGGPLVNIDGEIVGINI 305
++L T+T GI+S R +GL R+ +LQTD +IN GNSGG LVN GE++GIN
Sbjct: 147 YNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINPGNSGGALVNSLGELMGINT 202
Query: 306 MKVAAA------DGLSFAVPIDSAAKIIEQFKKNGRVVR 338
+ + +G+ FA+P A KI+++ ++GRV+R
Sbjct: 203 LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 102/186 (54%), Gaps = 11/186 (5%)
Query: 161 IVDADGTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKIN-S 219
I D +G ILT HVV G+ + VT+ DG ++ + D DIA++KI S
Sbjct: 62 IFDPEGYILTNYHVV---GGAD-----NITVTMLDGSKYDAEYIGGDEELDIAVIKIKAS 113
Query: 220 KTPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQ 279
P + G S K+ G+W +A+G P Q+TVT G+VS +R+ G +Q
Sbjct: 114 DKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYVGLIQ 173
Query: 280 TDCAINAGNSGGPLVNIDGEIVGIN--IMKVAAADGLSFAVPIDSAAKIIEQFKKNGRVV 337
TD AIN GNSGGPL+NI GE++GIN I+ A L FA+PI++ K ++ +V
Sbjct: 174 TDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILTQKKVE 233
Query: 338 RPWLGL 343
+ +LG+
Sbjct: 234 KAYLGV 239
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 114/219 (52%), Gaps = 22/219 (10%)
Query: 130 AAARVCPAVVNL---SAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRALPK 186
A R PAVVN+ I+D G I+T HV+ D
Sbjct: 35 AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------A 86
Query: 187 GKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMGCP 246
++ V LQDGR FE ++ +D +D+A++KIN+ LP + GD V+A+G P
Sbjct: 87 DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNP 146
Query: 247 HSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQTDCAINAGNSGGPLVNIDGEIVGINI 305
++L T+T GI+S R +GL R+ +LQTD +IN GN GG LVN GE++GIN
Sbjct: 147 YNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNXGGALVNSLGELMGINT 202
Query: 306 MKVAAA------DGLSFAVPIDSAAKIIEQFKKNGRVVR 338
+ + +G+ FA+P A KI+++ ++GRV+R
Sbjct: 203 LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 114/219 (52%), Gaps = 22/219 (10%)
Query: 130 AAARVCPAVVNL---SAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRALPK 186
A R PAVVN+ I+D G I+T HV+ D
Sbjct: 37 AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------A 88
Query: 187 GKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMGCP 246
++ V LQDGR FE ++ +D +D+A++KIN+ LP + GD V+A+G P
Sbjct: 89 DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNP 148
Query: 247 HSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQTDCAINAGNSGGPLVNIDGEIVGINI 305
++L T+T GI+S R +GL R+ +LQTD +IN GN GG LVN GE++GIN
Sbjct: 149 YNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNXGGALVNSLGELMGINT 204
Query: 306 MKVAAA------DGLSFAVPIDSAAKIIEQFKKNGRVVR 338
+ + +G+ FA+P A KI+++ ++GRV+R
Sbjct: 205 LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 243
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 22/219 (10%)
Query: 130 AAARVCPAVVNL---SAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRALPK 186
A R PAVVN+ I+D G I+T HV+ D
Sbjct: 35 AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------A 86
Query: 187 GKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMGCP 246
++ V LQDGR FE ++ +D +D+A++KIN+ LP + GD V+A+G P
Sbjct: 87 DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNP 146
Query: 247 HSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQTDCAINAGNSGGPLVNIDGEIVGINI 305
+L T+T GI+S R +GL R+ +LQTD +IN GNSGG LVN GE++GIN
Sbjct: 147 ANLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINT 202
Query: 306 MKVAAA------DGLSFAVPIDSAAKIIEQFKKNGRVVR 338
+ + +G+ FA+P A KI+++ ++GRV+R
Sbjct: 203 LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 114/219 (52%), Gaps = 22/219 (10%)
Query: 130 AAARVCPAVVNL---SAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRALPK 186
A R PAVVN+ I+D G I+T HV+ D
Sbjct: 35 AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------A 86
Query: 187 GKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMGCP 246
++ V LQDGR FE ++ +D +D+A++KIN+ LP + GD V+A+G P
Sbjct: 87 DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNP 146
Query: 247 HSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQTDCAINAGNSGGPLVNIDGEIVGINI 305
++L +T GI+S R +GL R+ +LQTD +IN GNSGG LVN GE++GIN
Sbjct: 147 YNLGQVITQGIISATGR----IGLNPTGRQNFLQTDASINPGNSGGALVNSLGELMGINT 202
Query: 306 MKVAAA------DGLSFAVPIDSAAKIIEQFKKNGRVVR 338
+ + +G+ FA+P A KI+++ ++GRV+R
Sbjct: 203 LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 106/185 (57%), Gaps = 19/185 (10%)
Query: 161 IVDADGTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSK 220
I+D G I+T HV+ D ++ V LQDGR FE ++ +D +D+A++KIN+
Sbjct: 69 IMDQRGYIITNKHVINDAD--------QIIVALQDGRVFEALLVGSDSLTDLAVLKINAT 120
Query: 221 TPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQ 279
LP + GD V+A+G P +L T+T GI+S R +GL R+ +LQ
Sbjct: 121 GGLPTIPINARRVPHIGDVVLAIGNPANLGQTITQGIISATGR----IGLNPTGRQNFLQ 176
Query: 280 TDCAINAGNSGGPLVNIDGEIVGINIMKVAAA------DGLSFAVPIDSAAKIIEQFKKN 333
TD +IN GNSGG LVN GE++GIN + + +G+ FA+P A KI+++ ++
Sbjct: 177 TDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
Query: 334 GRVVR 338
GRV+R
Sbjct: 237 GRVIR 241
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 22/219 (10%)
Query: 130 AAARVCPAVVNL---SAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRALPK 186
A R PAVVN+ I+D G I+T HV+ D
Sbjct: 37 AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------A 88
Query: 187 GKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMGCP 246
++ V LQDGR FE ++ +D +D+A++KIN+ LP + GD V+A+G P
Sbjct: 89 DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNP 148
Query: 247 HSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQTDCAINAGNSGGPLVNIDGEIVGINI 305
++L T+T GI+S + +GL R+ +LQTD +IN GNSGG LVN GE++GIN
Sbjct: 149 YNLGQTITQGIISA----TGAIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINT 204
Query: 306 MKVAAA------DGLSFAVPIDSAAKIIEQFKKNGRVVR 338
+ + +G+ FA+P A KI+++ ++GRV+R
Sbjct: 205 LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 243
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 22/219 (10%)
Query: 130 AAARVCPAVVNL---SAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRALPK 186
A R PAVVN+ I+D G I+T HV+ D
Sbjct: 35 AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------A 86
Query: 187 GKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMGCP 246
++ V LQDGR FE ++ +D +D+A++KIN+ LP + GD V+A+G P
Sbjct: 87 DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNP 146
Query: 247 HSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQTDCAINAGNSGGPLVNIDGEIVGINI 305
++L T+T GI+S + +GL R+ +LQTD +IN GNSGG LVN GE++GIN
Sbjct: 147 YNLGQTITQGIISA----TGAIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINT 202
Query: 306 MKVAAA------DGLSFAVPIDSAAKIIEQFKKNGRVVR 338
+ + +G+ FA+P A KI+++ ++GRV+R
Sbjct: 203 LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 112/219 (51%), Gaps = 22/219 (10%)
Query: 130 AAARVCPAVVNL---SAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRALPK 186
A R PAVVN+ I D G I+T HV+ D
Sbjct: 37 AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIXDQRGYIITNKHVIND--------A 88
Query: 187 GKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMGCP 246
++ V LQDGR FE ++ +D +D+A++KIN+ LP + GD V+A+G P
Sbjct: 89 DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNP 148
Query: 247 HSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQTDCAINAGNSGGPLVNIDGEIVGINI 305
++L T+T GI+S R +GL R+ +LQTD +IN GNSGG LVN GE+ GIN
Sbjct: 149 YNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVNSLGELXGINT 204
Query: 306 MKVAAA------DGLSFAVPIDSAAKIIEQFKKNGRVVR 338
+ + +G+ FA+P A KI ++ ++GRV+R
Sbjct: 205 LSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDGRVIR 243
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 114/219 (52%), Gaps = 22/219 (10%)
Query: 130 AAARVCPAVVNL---SAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRALPK 186
A R PAVVN+ I+D G I+T HV+ D
Sbjct: 35 AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------A 86
Query: 187 GKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMGCP 246
++ V LQDGR FE ++ +D +D+A++KIN+ LP + GD V+A+G P
Sbjct: 87 DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNP 146
Query: 247 HSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQTDCAINAGNSGGPLVNIDGEIVGINI 305
++L T+T GI+S R +GL R+ +L TD +IN GNSGG LVN GE++GIN
Sbjct: 147 YNLGQTITQGIISATGR----IGLNPTGRQNFLATDASINHGNSGGALVNSLGELMGINT 202
Query: 306 MKVAAA------DGLSFAVPIDSAAKIIEQFKKNGRVVR 338
+ + +G+ FA+P A KI+++ ++GRV+R
Sbjct: 203 LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 106/185 (57%), Gaps = 19/185 (10%)
Query: 161 IVDADGTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSK 220
I+D G I+T HV+ D ++ V LQDGR FE ++ +D +D+A++KIN+
Sbjct: 71 IMDQRGYIITNKHVIND--------ADQIIVALQDGRVFEALLVGSDSLTDLAVLKINAT 122
Query: 221 TPLPAAKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQ 279
LP + GD V+A+G P++L T+T GI+S R +GL R+ +L
Sbjct: 123 GGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLA 178
Query: 280 TDCAINAGNSGGPLVNIDGEIVGINIMKVAAA------DGLSFAVPIDSAAKIIEQFKKN 333
TD +IN GNSGG LVN GE++GIN + + +G+ FA+P A KI+++ ++
Sbjct: 179 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 238
Query: 334 GRVVR 338
GRV+R
Sbjct: 239 GRVIR 243
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 111/215 (51%), Gaps = 22/215 (10%)
Query: 130 AAARVCPAVVNL---SAPREFXXXXXXXXXXXXAIVDADGTILTCAHVVVDFHGSRALPK 186
A R PAVVN+ I+D G I+T HV+ D
Sbjct: 9 AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------A 60
Query: 187 GKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPAAKLGTSSKLCPGDWVVAMGCP 246
++ V LQDGR FE ++ +D +D+A++KIN+ LP + GD V+A+G P
Sbjct: 61 DQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNP 120
Query: 247 HSLQNTVTAGIVSCVDRKSSDLGLGGM-RREYLQTDCAINAGNSGGPLVNIDGEIVGINI 305
++L T+T GI+S R +GL R+ +LQTD +IN GNSGG LVN GE++GIN
Sbjct: 121 YNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINT 176
Query: 306 MKVAAA------DGLSFAVPIDSAAKIIEQFKKNG 334
+ + +G+ FA+P A KI+++ ++G
Sbjct: 177 LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 211
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 100/176 (56%), Gaps = 14/176 (7%)
Query: 166 GTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLPA 225
G +LT HV+ K+ + L DGR F+ ++ +D SDIA+++I + + L
Sbjct: 75 GYVLTNNHVINQAQ--------KISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQ 126
Query: 226 AKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAIN 285
+ S KL GD+ VA+G P L T T+GIVS + R S L L G+ ++QTD +IN
Sbjct: 127 IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR--SGLNLEGLEN-FIQTDASIN 183
Query: 286 AGNSGGPLVNIDGEIVGINIMKVA---AADGLSFAVPIDSAAKIIEQFKKNGRVVR 338
GNSGG L+N++GE++GIN +A + G+ FA+P + A + +Q G ++
Sbjct: 184 RGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEILE 239
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 74.3 bits (181), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 334 GRVVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVI 393
G +R ++G+ ML L+ I+A+L+ R+PSFP+V+ GVL+ V GSPAH AG P DV++
Sbjct: 1 GSHMRRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVIL 60
Query: 394 KFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQLVTLTVIPE 437
+ VQ+ ++ E + R L V ++R + L TL V PE
Sbjct: 61 AIGEQMVQNAEDVYEAV--RTQSQLAVQIRRGRETL-TLYVTPE 101
>pdb|2L97|A Chain A, Solution Structure Of Htra Pdz Domain From Streptococcus
Pneumoniae
Length = 134
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 312 DGLSFAVPIDSAAKIIEQFKKNGRVVRPWLGLKMLDLNDMIIAQLKERD-PSFPNVKSGV 370
+GL FA+P + A IIEQ +KNG+V RP LG++M++L+++ + ++ + PS NV SGV
Sbjct: 2 EGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPS--NVTSGV 59
Query: 371 LVPVVTPGSPA--HLAGFLPSDVVIKFDGKPVQSITEIIEIMGDR-VGEPLKVVVQRAND 427
+V V PA HL + DV+ K D K + S T++ + + +G+ +K+ R
Sbjct: 60 IVRSVQSNMPANGHLEKY---DVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGK 116
Query: 428 QLVT 431
+ T
Sbjct: 117 EETT 120
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 338 RPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVIKFDG 397
+ ++G++M+ L +LK+R FP+V SG + V P +PA G +DV+I +G
Sbjct: 18 KKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISING 77
Query: 398 KPVQSITEIIEIMGDRVGEPLKVVVQRANDQLVTLTVIPEEANP 441
+ V S ++ +++ + L +VV+R N+ ++ +TVIPEE +P
Sbjct: 78 QSVVSANDVSDVI--KRESTLNMVVRRGNEDIM-ITVIPEEIDP 118
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of Pdz
Domain And Ligand Resonances
Length = 105
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 334 GRVVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVI 393
G ++ ++G++M+ L +LK+R FP+V SG + V P +PA G +DV+I
Sbjct: 1 GSHMKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVII 60
Query: 394 KFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQLVTLTVIPEEANP 441
+G+ V S ++ +++ + L +VV+R N+ ++ +TVIPEE +P
Sbjct: 61 SINGQSVVSANDVSDVI--KRESTLNMVVRRGNEDIM-ITVIPEEIDP 105
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 111/249 (44%), Gaps = 34/249 (13%)
Query: 160 AIVDADGTILTCAHVVVDFHGSRALPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINS 219
A + DG +LT AH V H ++ K + D R + VL DIA++ + S
Sbjct: 78 AFMIGDGKLLTNAHCVE--HDTQVKVKRR-----GDDRKYVAKVLVRGVDCDIALLSVES 130
Query: 220 KTPLPAA---KLGTSSKLCPGDWVVAMGCPHSLQN-TVTAGIVSCVD-----RKSSDLGL 270
+ A +LG +L D V +G P +VT G+VS ++ SSDL L
Sbjct: 131 EDFWKGAEPLRLGHLPRL--QDSVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSDL-L 187
Query: 271 GGMRREYLQTDCAINAGNSGGPLVNIDGEIVGI--NIMKVAAADGLSFAVPIDSAAKIIE 328
G +Q D AIN GNSGGP N GE +G+ + + + + + +P + +
Sbjct: 188 G------IQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLT 241
Query: 329 QFKKNGRVV-RPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFL 387
+++NG+ P LG+ + L + + R+ GVLV V P S A
Sbjct: 242 DYERNGKYTGYPCLGVLLQKLENPAL-----RECLKVPTNEGVLVRRVEPTSDASKV-LK 295
Query: 388 PSDVVIKFD 396
DV++ FD
Sbjct: 296 EGDVIVSFD 304
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 334 GRVVRPWLGLKMLDLNDMIIAQLKERDPSFPNVKSGVLVPVVTPGSPAHLAGFLPSDVVI 393
G ++ ++G++M + ++ +LK +P FP V SG+ V V P SP+ G D+++
Sbjct: 1 GSHMKRFIGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIV 60
Query: 394 KFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQLVTLTVIPE 437
K +G+P+ +E+ E + PL + V+R ND L+ ++ PE
Sbjct: 61 KVNGRPLVDSSELQEAV--LTESPLLLEVRRGNDDLL-FSIAPE 101
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 16/140 (11%)
Query: 168 ILTCAHVVVDFHGSRALPKGKVDVTLQDG-RTFEGTVLNADFHSDIAIVKINSKTPLPAA 226
++T AHVV G +VT+ G + FE TV++ D D+AI+ + P P
Sbjct: 70 VMTNAHVV----------AGSNNVTVYAGDKPFEATVVSYDPSVDVAILAVPHLPPPPLV 119
Query: 227 KLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGG---MRREYLQTDCA 283
+K G VV +G P T T + R S G + R+
Sbjct: 120 FAAEPAKT--GADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRAD 177
Query: 284 INAGNSGGPLVNIDGEIVGI 303
+ G+SGGPL++++G+++G+
Sbjct: 178 VEQGDSGGPLIDLNGQVLGV 197
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 16/140 (11%)
Query: 168 ILTCAHVVVDFHGSRALPKGKVDVTLQDG-RTFEGTVLNADFHSDIAIVKINSKTPLPAA 226
++T AHVV G +VT+ G + FE TV++ D D+AI+ + P P
Sbjct: 52 VMTNAHVV----------AGSNNVTVYAGDKPFEATVVSYDPSVDVAILAVPHLPPPPLV 101
Query: 227 KLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGG---MRREYLQTDCA 283
+K G VV +G P T T + R S G + R+
Sbjct: 102 FAAEPAKT--GADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRAD 159
Query: 284 INAGNSGGPLVNIDGEIVGI 303
+ G+SGGPL++++G+++G+
Sbjct: 160 VEQGDSGGPLIDLNGQVLGV 179
>pdb|3ID4|A Chain A, Crystal Structure Of Rsep Pdz2 Domain Fused Gkaspv Peptide
Length = 93
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 375 VTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQLVTLTV 434
V P S A AG D ++K DG+P+ + ++ D G+ L + ++R L +LT+
Sbjct: 9 VQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPL-SLTL 67
Query: 435 IPE 437
IPE
Sbjct: 68 IPE 70
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 375 VTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQLVTLTV 434
V P S A AG D ++K DG+P+ + ++ D G+ L + ++R L +LT+
Sbjct: 9 VQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPL-SLTL 67
Query: 435 IPE 437
IPE
Sbjct: 68 IPE 70
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 375 VTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQLVTLTV 434
V P S A AG D ++K DG+P+ + ++ D G+ L + ++R L +LT+
Sbjct: 10 VQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPL-SLTL 68
Query: 435 IPE 437
IPE
Sbjct: 69 IPE 71
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 16/140 (11%)
Query: 168 ILTCAHVVVDFHGSRALPKGKVDVTLQDG-RTFEGTVLNADFHSDIAIVKINSKTPLPAA 226
++T AHVV G +VT+ G + FE TV++ D D+AI+ + P P
Sbjct: 50 VMTNAHVV----------AGSNNVTVYAGDKPFEATVVSYDPSVDVAILAVPHLPPPPLV 99
Query: 227 KLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGG---MRREYLQTDCA 283
+K G VV +G P T T + R S G + R+
Sbjct: 100 FAAEPAKT--GADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRAD 157
Query: 284 INAGNSGGPLVNIDGEIVGI 303
+ G++GGPL++++G+++G+
Sbjct: 158 VEQGDAGGPLIDLNGQVLGV 177
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
pdb|1DUA|A Chain A, Crystal Structure Of Exfoliative Toxin A
Length = 242
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 226 AKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAIN 285
AK+GTS+ L GD + +G P + V+ + R S++ L + R +
Sbjct: 142 AKIGTSNDLKDGDKLELIGYPFDHK-------VNQMHR--SEIELTTLSRGLRYYGFTV- 191
Query: 286 AGNSGGPLVNIDGEIVGINIMKVAAAD---GLSFAVPIDSAAKII 327
GNSG + N +GE+VGI+ KV+ D +++ V I + K I
Sbjct: 192 PGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNYVKRI 236
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 364 PNVKS-GVLVPVVTPGSPAHLAGFLP-SDVVIKFDGKPVQSITE 405
PN K+ G+ + + P SPAHL G L D ++ +GK V++ TE
Sbjct: 32 PNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTE 75
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 367 KSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRAN 426
+ G ++ + PGSPA AG +D+V+ +GK V+++ D V E ++++
Sbjct: 29 QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDH------DGVVE----MIRKGG 78
Query: 427 DQLVTLTVIPEEA 439
DQ TL V+ +EA
Sbjct: 79 DQ-TTLLVLDKEA 90
>pdb|1DUE|A Chain A, Crystal Structure Of Exfoliative Toxin A S195a Mutant
Length = 242
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 226 AKLGTSSKLCPGDWVVAMGCPHSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAIN 285
AK+GTS+ L GD + +G P + V+ + R S++ L + R +
Sbjct: 142 AKIGTSNDLKDGDKLELIGYPFDHK-------VNQMHR--SEIELTTLSRGLRYYGFTV- 191
Query: 286 AGNSGGPLVNIDGEIVGINIMKVAAAD---GLSFAVPIDSAAKII 327
GN+G + N +GE+VGI+ KV+ D +++ V I + K I
Sbjct: 192 PGNAGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNYVKRI 236
>pdb|2ZPM|A Chain A, Crystal Structure Analysis Of Pdz Domain B
Length = 91
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 375 VTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQLVTLTV 434
V P S A AG D ++ DG+P+ + ++ D G L + ++R L +LT+
Sbjct: 11 VQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVXLVRDNPGXSLALEIERQGSPL-SLTL 69
Query: 435 IPE 437
IPE
Sbjct: 70 IPE 72
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 367 KSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRAN 426
+ G ++ + PGSPA AG +D+V+ +GK V+++ D V E ++++
Sbjct: 25 QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDH------DGVVE----MIRKGG 74
Query: 427 DQLVTLTVIPEEA 439
DQ L + +EA
Sbjct: 75 DQTTLLVLDKQEA 87
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 367 KSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQS-----ITEIIEIMGDR 413
+ G ++ + PGSPA AG +D+V+ +GK V++ + E+I GD+
Sbjct: 28 QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ 79
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 32.3 bits (72), Expect = 0.61, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 367 KSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITE 405
K G+ V VT GS AH AG D +++F+G ++S TE
Sbjct: 41 KGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATE 79
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 32.0 bits (71), Expect = 0.66, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 367 KSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSIT--EIIEIMGDRVGEPLKVVVQR 424
K G + +V PGSPA AG L D +++ +G+ V+ T +++ + + +VV
Sbjct: 25 KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP 84
Query: 425 ANDQLV 430
ND L+
Sbjct: 85 ENDSLL 90
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 31.6 bits (70), Expect = 0.81, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 367 KSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSIT 404
K G + +V PGSPA AG L D +++ +G+ V+ T
Sbjct: 26 KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET 63
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 31.6 bits (70), Expect = 0.81, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 367 KSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSIT 404
K G + +V PGSPA AG L D +++ +G+ V+ T
Sbjct: 26 KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET 63
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 31.6 bits (70), Expect = 0.83, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 367 KSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSIT 404
K G + +V PGSPA AG L D +++ +G+ V+ T
Sbjct: 26 KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET 63
>pdb|1WCZ|A Chain A, Crystal Structure Of An Alkaline Form Of V8 Protease From
Staphylococcus Aureus
Length = 268
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 273 MRREYLQTDCAINAGNSGGPLVNIDGEIVGIN 304
++ E +Q D + GNSG P+ N E++GI+
Sbjct: 153 LKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIH 184
>pdb|1QY6|A Chain A, Structue Of V8 Protease From Staphylococcus Aureus
pdb|2O8L|A Chain A, Structure Of V8 Protease From Staphylococcus Aureus
Length = 274
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 273 MRREYLQTDCAINAGNSGGPLVNIDGEIVGIN 304
++ E +Q D + GNSG P+ N E++GI+
Sbjct: 153 LKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIH 184
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 375 VTPGSPAHLAGFLPSDVVIKFDGKPVQSI--TEIIEIM 410
V GSPA AG D++ +G+PV + TE+IE++
Sbjct: 40 VEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELL 77
>pdb|1ZTB|A Chain A, Crystal Structure Of Chorismate Synthase From
Mycobacterium Tuberculosis
pdb|2G85|A Chain A, Crystal Structure Of Chorismate Synthase From
Mycobacterium Tuberculosis At 2.22 Angstrons Of
Resolution
Length = 401
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 66 ISSDRWQFGNVSLVSSRVNPASAGSIKKEYPVTKEAPVKEETTGDVKDGKDSCCRCLGRD 125
I + W + + V+PA + + P+T+ P + G +K G D L R
Sbjct: 77 IGNTEWPKWETVMAADPVDPAELADVARNAPLTRPRPGHADYAGMLKYGFDDARPVLERA 136
Query: 126 TIANAAARVCPAVV 139
+ AARV V
Sbjct: 137 SARETAARVAAGTV 150
>pdb|2O11|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase
pdb|2O12|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase In Complex
With Fmn
pdb|2QHF|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase In Complex
With Nca
Length = 407
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 66 ISSDRWQFGNVSLVSSRVNPASAGSIKKEYPVTKEAPVKEETTGDVKDGKDSCCRCLGRD 125
I + W + + V+PA + + P+T+ P + G +K G D L R
Sbjct: 77 IGNTEWPKWETVMAADPVDPAELADVARNAPLTRPRPGHADYAGMLKYGFDDARPVLERA 136
Query: 126 TIANAAARVCPAVV 139
+ AARV V
Sbjct: 137 SARETAARVAAGTV 150
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 366 VKSGVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSI--TEIIEIM 410
V+ V V SPA LAG P D + +G V+ I EI++I+
Sbjct: 35 VEXVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDII 81
>pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg
And Mgadp
Length = 413
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 271 GGMRREYLQTDCAINAGNSGGPLVNIDGEIVGINIMKVAAADGLSFAVPID--SAAKIIE 328
GGM +L+ +N G L + G+ + N+M AAA+G+ +P+D +A K E
Sbjct: 234 GGMAFTFLKV---LNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPVDFVTADKFDE 290
Query: 329 QFKKNGRVVRP-----WLGL 343
Q K V W+GL
Sbjct: 291 QAKIGQATVASGIPAGWMGL 310
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 370 VLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITE 405
+++ +TPGS A A P DV++ DG +S+T
Sbjct: 31 LVITRITPGSKAAAANLCPGDVILAIDGFGTESMTH 66
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 371 LVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSI--TEIIEIM 410
V V SPA LAG P D + +G V+ I EI++I+
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDII 81
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 21 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 61
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 369 GVLVPVVTPGSPAHLAGFLPSDVVIKFDGKPVQSITEIIEIMGDRVGEPLKVVVQRANDQ 428
G + V G PA LAG DV+I+ +G V + E E + DR+ +++ +
Sbjct: 32 GSFIKEVQKGGPADLAGLEDEDVIIEVNG--VNVLDEPYEKVVDRI---------QSSGK 80
Query: 429 LVTLTVIPEEANP 441
VTL V +++ P
Sbjct: 81 NVTLLVCGKKSGP 93
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 21 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 61
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 9 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 49
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 10 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 50
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 10 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 50
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 5 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 45
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 33 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 73
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 5 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 45
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 33 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 73
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 7 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 47
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 32 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 72
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 5 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 45
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 184 LPKGKVDVTLQDGRTFEGTVLNADFHSDIAIVKINSKTPLP 224
+P G++ V + G GTV +H D+A+ +N P P
Sbjct: 25 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTP 65
>pdb|2AS9|A Chain A, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
pdb|2AS9|B Chain B, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
Length = 210
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 273 MRREYLQTDCAINAGNSGGPLVNIDGEIVGI 303
++ L D I GNSG P++N + E++G+
Sbjct: 142 IKDNILNFDAYIEPGNSGSPVLNSNNEVIGV 172
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 375 VTPGSPAHLAGFLPSDVVIKFDGKPVQSITEI 406
VTPGS A LA DV+ DG+ ++T +
Sbjct: 34 VTPGSKAALANLCIGDVITAIDGENTSNMTHL 65
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 28.1 bits (61), Expect = 9.3, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 369 GVLVPVVTPGSPAHLAGFLPSDVVIKFDG-----KPVQSITEIIEIMGDRVGEPLKVVVQ 423
G + V G PA LAG DV+I+ +G +P + + + I+ G V L V +
Sbjct: 28 GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNV--TLLVCGK 85
Query: 424 RANDQL 429
+A D +
Sbjct: 86 KAQDTV 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,726,108
Number of Sequences: 62578
Number of extensions: 519804
Number of successful extensions: 1566
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 124
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)