BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013445
(443 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XF06|TI442_ARATH Mitochondrial import inner membrane translocase subunit TIM44-2
OS=Arabidopsis thaliana GN=TIM44-2 PE=1 SV=1
Length = 469
Score = 492 bits (1267), Expect = e-138, Method: Compositional matrix adjust.
Identities = 248/391 (63%), Positives = 311/391 (79%), Gaps = 13/391 (3%)
Query: 1 MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
MASRKLVRDL +++Q P QL + RL L+ NG++S+R+FSVF EFSKKI+GEA
Sbjct: 1 MASRKLVRDLLITKQ-PLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEA 59
Query: 61 ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
+SNPEF+ +VKE K++AEE++GVKE+LK RTKQTTE+LYKQ GVW EAES KKVS+S+
Sbjct: 60 DSNPEFQKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSV 119
Query: 121 KEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLK 180
K+K SAATEEVK +F+ G +++ G + GE++Q+Q+ S++ +TF+GK K
Sbjct: 120 KDKFSAATEEVKESFKLGKEESAESA---SSSGTGTTEGEKQQQQSGSTEEQDTFFGKFK 176
Query: 181 SSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTR 240
SSISSPK + AF K +D AKKG DIVKDEL G+PSKRKHLEYTP P +TGE+STR
Sbjct: 177 SSISSPKLSEAFHK-----PLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERSTR 231
Query: 241 TDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDN 296
T++V+ P+K+S W K L+EKMQGYPVFKR++G+SEPVV K QEIAEDVRE+WETSDN
Sbjct: 232 TEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSDN 291
Query: 297 PIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVET 356
PIVHKIQDMNE IF+ET +A++ KEIRRRDPSFSLPDFVSE+QEAIRPVL+AY KGD +T
Sbjct: 292 PIVHKIQDMNERIFEETGSASTYKEIRRRDPSFSLPDFVSEIQEAIRPVLNAYSKGDAKT 351
Query: 357 LKKYCSPEVIERCKAEHTAYQSHGIFFDNRV 387
LKKYCS E+IERC AEH A+ S G FFD+++
Sbjct: 352 LKKYCSKELIERCTAEHRAFTSQGYFFDHKL 382
>sp|Q1PF33|TI441_ARATH Mitochondrial import inner membrane translocase subunit TIM44-1
OS=Arabidopsis thaliana GN=TIM44-1 PE=2 SV=1
Length = 474
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 232/393 (59%), Positives = 301/393 (76%), Gaps = 12/393 (3%)
Query: 1 MASRKLVRDLFLSRQRPRFLQL--TPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKG 58
MA RK++RDL +++Q P QL + ++ R + A GY+S+R+FSVF EFSK I+G
Sbjct: 1 MAIRKIIRDLLITKQ-PLLRQLFHQRVLRANARSEFLPAIGYTSHRRFSVFTEFSKNIRG 59
Query: 59 EAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSA 118
EA SNPEF+ +VKELK++ EE KGV E+LK RTKQTTE+LYKQ DGVW EAES KKVS+
Sbjct: 60 EAHSNPEFERTVKELKERTEEFKGVTEDLKVRTKQTTEKLYKQADGVWTEAESAAKKVSS 119
Query: 119 SMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGK 178
S+K+K+SAA+EEVK +F+ G + + + G +AS GE ++Q+ S++ TF+ K
Sbjct: 120 SVKDKLSAASEEVKESFKLGKEENA---ESASSSGTRASQGE--KQQSGSTEELHTFFAK 174
Query: 179 LKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKS 238
KSS+SSPK + F +LKEAK D+ K+ DIVKDEL G+PS++K LE+TP P +TGE+S
Sbjct: 175 FKSSLSSPKVSEVFYRLKEAKPFDIVKQALDIVKDELRGNPSRKKFLEHTPPPPFTGERS 234
Query: 239 TRTDLVVTPSKKSM----WSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETS 294
RT++VVT +K+S W +EKMQG PVFKR++G+SEPVV K QEIAEDVRE WETS
Sbjct: 235 MRTEMVVTQTKQSKLQQKWESFREKMQGSPVFKRLSGMSEPVVNKSQEIAEDVREIWETS 294
Query: 295 DNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDV 354
DNPIVHKIQDMNE +ETD+A++ KEIR RDPSFSLPDF +E++E I+PVL+AY +GDV
Sbjct: 295 DNPIVHKIQDMNEKFLKETDSASTYKEIRSRDPSFSLPDFAAEIEEVIKPVLNAYSEGDV 354
Query: 355 ETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRV 387
ETLKKYCS EVIERC AE TAYQ+HG+ FDN++
Sbjct: 355 ETLKKYCSKEVIERCTAERTAYQTHGVLFDNKL 387
>sp|Q01852|TIM44_YEAST Mitochondrial import inner membrane translocase subunit TIM44
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM44 PE=1 SV=1
Length = 431
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 291 WETSDNPIV---HKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VL 346
W+ S+NP++ KI + F ET+++ + + DP+FS F ++E I P +L
Sbjct: 243 WDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEIL 302
Query: 347 SAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRV 387
AY+KGDV+ LKK+ S A+ ++ ++ D R+
Sbjct: 303 EAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRI 343
>sp|O60084|TIM44_SCHPO Mitochondrial import inner membrane translocase subunit tim44
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim44 PE=3 SV=1
Length = 427
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 285 EDVRERWETSDNPIVHKIQDMNETI-------FQETDAAASIKEIRRRDPSFSLPDFVSE 337
+++++ ++ S++PIV I+DM ++I F ET+A+ ++ + DPSF+ F+
Sbjct: 229 QELKKSYQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRFKEIDPSFNTEHFLQY 288
Query: 338 VQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGI 381
++E I P V AY+KGD E LK + S + Y HG+
Sbjct: 289 LREYIVPEVTEAYVKGDKEVLKTWLSEAPFSVYETTTKEYAKHGV 333
>sp|O35094|TIM44_RAT Mitochondrial import inner membrane translocase subunit TIM44
OS=Rattus norvegicus GN=Timm44 PE=2 SV=1
Length = 453
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/388 (21%), Positives = 156/388 (40%), Gaps = 72/388 (18%)
Query: 24 PLQGSSTRL-----RLVSANGYSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
P GSS ++ L YSS + IK E N E K S+K+ + +A+
Sbjct: 31 PRGGSSYQISRPGGELTLTKSYSSGSRKGFLSGLLDNIKQELAQNKEMKESIKKFRDEAK 90
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFRTG 138
+++ + Q + YK + ES + S ++K+K+ E+ GT +
Sbjct: 91 KLE------ESDALQEARRKYKTI-------ESETVRTSEAIKKKLG----ELTGTVKE- 132
Query: 139 STDTSAKHD--DDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLK 196
S D +K D +++G + ++ KQ S E GK T AF+ +
Sbjct: 133 SLDEVSKSDLGRKIKEGVEEAARTAKQSAESVSKGGEKL-GK----------TAAFKAIS 181
Query: 197 EAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEK--------STRTDLVVTPS 248
+ V+ KK +I + L + + R+ + G K + L V
Sbjct: 182 QG--VESVKK--EIDESVLGHTGTYRRPERLRKRTEFAGAKFKESKVFEANEEALGVVLH 237
Query: 249 KKSMW-SKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVH------- 300
K S W + K+ VF R +++ +++ SDN ++
Sbjct: 238 KDSKWYQQWKDFKDNNVVFNRFF---------------EMKMKYDESDNVLIRASRALTD 282
Query: 301 KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLKK 359
K+ D+ +F +T+ + + EI R DP+F F+ + + I P +L A + G+++ LK
Sbjct: 283 KVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDRFLHQCETDIIPNILEAMISGELDILKD 342
Query: 360 YCSPEVIERCKAEHTAYQSHGIFFDNRV 387
+C + ++ G+ F +R+
Sbjct: 343 WCYEATYNQLAHSIQQAKALGLQFHSRI 370
>sp|O35857|TIM44_MOUSE Mitochondrial import inner membrane translocase subunit TIM44
OS=Mus musculus GN=Timm44 PE=2 SV=2
Length = 452
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 143/352 (40%), Gaps = 77/352 (21%)
Query: 34 LVSANGYSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQ 93
L YSS + IK E N E K S+K+ + +A++++ + Q
Sbjct: 45 LTLTKSYSSGSRKGFLSGLLDNIKQELAKNKEMKESIKKFRDEAKKLE------ESDALQ 98
Query: 94 TTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHD--DDVR 151
+ YK + ES + S ++K+K+ E+ GT + S D +K D ++
Sbjct: 99 EARRKYKSI-------ESETVRTSEAIKKKLG----ELTGTVKE-SLDEVSKSDLGRKIK 146
Query: 152 DGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIV 211
+G + ++ KQ S + E GK T AF+ + + G + V
Sbjct: 147 EGVEEAARTAKQSAESVSKSGEKL-GK----------TAAFKAISQ---------GVESV 186
Query: 212 KDELSGS----------PSK-RKHLEYTPSPSWTGE--KSTRTDLVVTPSKKSMW-SKLK 257
K EL S P + RK E+ + + ++ L V K S W + K
Sbjct: 187 KKELDESVLGQTGPYRRPERLRKRTEFAGAKFKESKVFEANEEALGVVLHKDSKWYQQWK 246
Query: 258 EKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVH-------KIQDMNETIF 310
+ VF R +++ +++ SDN ++ K+ D+ +F
Sbjct: 247 DFKDNNVVFNRFF---------------EMKMKYDESDNVLIRASRALTDKVTDLLGGLF 291
Query: 311 QETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLKKYC 361
+T+ + + EI R DP+F F+ + + I P +L A + G+++ LK +C
Sbjct: 292 SKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPNILEAMISGELDILKDWC 343
>sp|B4U237|UXAC_STREM Uronate isomerase OS=Streptococcus equi subsp. zooepidemicus
(strain MGCS10565) GN=uxaC PE=3 SV=1
Length = 465
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 25 LQGSSTRLRLVSANGYS------SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
L G + RL+ ANG S S + FK F++ ++ + NP + SV ELK
Sbjct: 53 LGGDHYKWRLMRANGISEEEITGSASKLDKFKAFARTLQ-RSYGNPVYHWSVMELKN--- 108
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATE 129
+ GV E L T+ E++Y +++ +E + + +K+ A + + T+
Sbjct: 109 -VFGVCELL---TEDNAEEIYHRINAYLVEHQISPRKLIADSRVRFIGTTD 155
>sp|C0MA32|UXAC_STRE4 Uronate isomerase OS=Streptococcus equi subsp. equi (strain 4047)
GN=uxaC PE=3 SV=1
Length = 465
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 25 LQGSSTRLRLVSANGYS------SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
L G + RL+ ANG S S + FK F++ ++ + NP + SV ELK
Sbjct: 53 LGGDHYKWRLMRANGISEEEITGSASKLDKFKAFARTLQ-RSYGNPVYHWSVMELKN--- 108
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATE 129
+ GV E L T+ E++Y +++ +E + + +K+ A + + T+
Sbjct: 109 -VFGVCELL---TEDNAEEIYHRINAYLVEHQISPRKLIADSRVRFIGTTD 155
>sp|B9DSL9|UXAC_STRU0 Uronate isomerase OS=Streptococcus uberis (strain ATCC BAA-854 /
0140J) GN=uxaC PE=3 SV=1
Length = 467
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 25 LQGSSTRLRLVSANGYS------SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
L G + RL+ ANG S S Q FK F++ ++ + NP + S ELK
Sbjct: 53 LGGDHYKWRLMRANGISEEEITGSASQLDKFKAFARTLQ-RSYGNPVYHWSAMELKN--- 108
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATE 129
+ G++E L T++ E++Y +++ +E + + +K+ A K T+
Sbjct: 109 -VFGIEEVL---TEENAEEIYNRLNTYLLENKVSPRKLIADSKVTFIGTTD 155
>sp|Q13535|ATR_HUMAN Serine/threonine-protein kinase ATR OS=Homo sapiens GN=ATR PE=1
SV=3
Length = 2644
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 217 GSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKS-MWSKLKEKMQGYPVFKRITGISEP 275
G KR+ L + +PS K T V ++KS +WS LK+K + + +G+ P
Sbjct: 426 GISPKRRRLSSSLNPSKRAPKQTEEIKHVDMNQKSILWSALKQKAESLQISLEYSGLKNP 485
Query: 276 VVTKGQEIAEDVRERWETSDNPIVH-KIQDMNETIFQETDAAASIKEIRRRDPSFSLP-- 332
V+ E+ E + + + VH Q+MN F++ + ++ PS +
Sbjct: 486 VI----EMLEGIAVVLQLTALCTVHCSHQNMNCRTFKDCQHKS------KKKPSVVITWM 535
Query: 333 --DFVSEVQEAIRPVLSAYMKGDVET 356
DF ++V ++ R +L + K D+E
Sbjct: 536 SLDFYTKVLKSCRSLLESVQKLDLEA 561
>sp|B2TS45|MUTS2_CLOBB MutS2 protein OS=Clostridium botulinum (strain Eklund 17B / Type B)
GN=mutS2 PE=3 SV=1
Length = 785
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 19/118 (16%)
Query: 16 RPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKG-EAESNPEFKHSVKEL- 73
RP + L + G S N + +++ + KE K ++ N EF+ ++ L
Sbjct: 473 RPTYRLLIGVPGKS--------NAFEISKRIGLGKEVIDCAKNYMSKENLEFEGLIRNLQ 524
Query: 74 ------KKKAEEIKGVKEE---LKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKE 122
KK A + K +K+E LK++ +Q E+L K D +MEA KK+ A+ K+
Sbjct: 525 EKSIIAKKDARDAKVIKDEADNLKKKYEQKLERLEKVKDKAYMEAREEAKKIVANAKD 582
>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-11 PE=4 SV=1
Length = 1333
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 35 VSANGYSSNRQFSVFKEFSK----KIKGEAESNPEF---KHSVKELKK-----KAEEIKG 82
+S NG S +F V K+FS ++N E KH++ ++ K K E+
Sbjct: 317 ISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPD 376
Query: 83 VKEELKERTKQT-TEQLYKQVDGVWMEAESTVKKVSASMKE------KISAATEEVKGTF 135
+ +E K+ T +T TE+L K + G+ E E T + ++ K+ A +E+
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436
Query: 136 RTG 138
++G
Sbjct: 437 KSG 439
>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-7 PE=4 SV=1
Length = 1333
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 35 VSANGYSSNRQFSVFKEFSK----KIKGEAESNPEF---KHSVKELKK-----KAEEIKG 82
+S NG S +F V K+FS ++N E KH++ ++ K K E+
Sbjct: 317 ISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPD 376
Query: 83 VKEELKERTKQT-TEQLYKQVDGVWMEAESTVKKVSASMKE------KISAATEEVKGTF 135
+ +E K+ T +T TE+L K + G+ E E T + ++ K+ A +E+
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436
Query: 136 RTG 138
++G
Sbjct: 437 KSG 439
>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-1 PE=4 SV=1
Length = 1333
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 35 VSANGYSSNRQFSVFKEFSK----KIKGEAESNPEF---KHSVKELKK-----KAEEIKG 82
+S NG S +F V K+FS ++N E KH++ ++ K K E+
Sbjct: 317 ISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPD 376
Query: 83 VKEELKERTKQT-TEQLYKQVDGVWMEAESTVKKVSASMKE------KISAATEEVKGTF 135
+ +E K+ T +T TE+L K + G+ E E T + ++ K+ A +E+
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436
Query: 136 RTG 138
++G
Sbjct: 437 KSG 439
>sp|Q0VBM2|FA83B_MOUSE Protein FAM83B OS=Mus musculus GN=Fam83b PE=1 SV=1
Length = 1012
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 209 DIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKR 268
D+ K+E + P+ +K + +PS G + R+ L +TP K+ +K K P F R
Sbjct: 745 DVNKEEPNKEPNSKKEGKASPSFLKKGSQKLRSLLSLTPEKRESLAKNKA-----PAFYR 799
Query: 269 ITGISEPVVTKGQE 282
+ S+ +V++G+E
Sbjct: 800 MCSSSDTLVSEGEE 813
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,040,722
Number of Sequences: 539616
Number of extensions: 6578978
Number of successful extensions: 34639
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 598
Number of HSP's that attempted gapping in prelim test: 33166
Number of HSP's gapped (non-prelim): 1601
length of query: 443
length of database: 191,569,459
effective HSP length: 121
effective length of query: 322
effective length of database: 126,275,923
effective search space: 40660847206
effective search space used: 40660847206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)