Query 013445
Match_columns 443
No_of_seqs 214 out of 375
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2580 Mitochondrial import i 100.0 7.8E-71 1.7E-75 559.1 22.7 369 26-437 41-426 (459)
2 TIGR00984 3a0801s03tim44 mitoc 100.0 3.5E-63 7.6E-68 504.2 20.4 325 54-436 1-354 (378)
3 PF04280 Tim44: Tim44-like dom 99.7 4.2E-17 9.1E-22 144.4 6.6 118 315-434 1-122 (147)
4 COG4395 Uncharacterized protei 99.2 1.7E-11 3.6E-16 121.7 7.5 118 314-435 132-255 (281)
5 KOG2580 Mitochondrial import i 98.5 5.8E-07 1.3E-11 93.7 11.7 251 47-346 67-356 (459)
6 TIGR00984 3a0801s03tim44 mitoc 97.1 0.0014 3.1E-08 68.5 7.4 100 65-197 19-139 (378)
7 PF07464 ApoLp-III: Apolipopho 90.1 0.39 8.6E-06 44.8 4.3 30 49-78 43-73 (155)
8 PF07961 MBA1: MBA1-like prote 87.9 1.3 2.7E-05 44.1 6.3 66 329-395 67-132 (235)
9 PRK01919 tatB sec-independent 63.4 27 0.00058 33.4 6.9 19 47-65 37-55 (169)
10 PF05957 DUF883: Bacterial pro 59.6 91 0.002 26.1 9.0 17 65-81 2-18 (94)
11 PRK06568 F0F1 ATP synthase sub 51.1 2E+02 0.0044 26.9 10.5 78 49-126 33-111 (154)
12 COG1422 Predicted membrane pro 45.8 37 0.00081 33.3 5.0 39 47-85 58-96 (201)
13 PRK09635 sigI RNA polymerase s 45.3 42 0.00092 33.8 5.5 50 314-365 154-203 (290)
14 COG1510 Predicted transcriptio 43.8 89 0.0019 30.2 7.0 46 52-101 98-143 (177)
15 KOG2391 Vacuolar sorting prote 42.9 1.2E+02 0.0027 32.1 8.5 72 48-134 211-286 (365)
16 TIGR02957 SigX4 RNA polymerase 38.8 54 0.0012 32.5 5.1 50 314-365 144-193 (281)
17 KOG2542 Uncharacterized conser 35.2 72 0.0016 34.6 5.5 71 296-368 390-466 (500)
18 PRK04654 sec-independent trans 31.9 1.6E+02 0.0036 29.2 7.0 27 49-76 43-69 (214)
19 CHL00118 atpG ATP synthase CF0 30.9 4.2E+02 0.009 24.2 10.5 28 53-80 55-82 (156)
20 KOG2481 Protein required for n 28.2 30 0.00065 38.3 1.4 56 342-403 87-142 (570)
21 PRK06253 O-phosphoseryl-tRNA s 27.0 66 0.0014 35.8 3.7 87 263-354 36-143 (529)
22 PF12893 Lumazine_bd_2: Putati 26.9 59 0.0013 27.6 2.7 55 337-391 5-76 (116)
23 PF11544 Spc42p: Spindle pole 26.1 1.3E+02 0.0029 25.3 4.5 36 60-95 4-39 (76)
24 PRK13454 F0F1 ATP synthase sub 25.9 5.6E+02 0.012 24.1 11.0 28 53-80 64-91 (181)
25 PF14357 DUF4404: Domain of un 25.0 1.4E+02 0.003 25.2 4.5 37 66-102 2-38 (85)
26 PF10540 Membr_traf_MHD: Munc1 24.8 85 0.0018 28.4 3.5 32 339-371 1-32 (137)
27 PF00430 ATP-synt_B: ATP synth 24.6 4.5E+02 0.0097 22.5 8.9 28 53-80 32-59 (132)
28 TIGR01069 mutS2 MutS2 family p 24.4 5.3E+02 0.012 30.0 10.5 16 45-60 491-506 (771)
29 PRK13428 F0F1 ATP synthase sub 24.3 6.3E+02 0.014 27.3 10.5 31 49-79 30-60 (445)
30 PRK09636 RNA polymerase sigma 24.2 1.1E+02 0.0025 30.3 4.6 50 314-365 151-200 (293)
31 COG0711 AtpF F0F1-type ATP syn 24.2 5.7E+02 0.012 23.6 11.0 39 46-84 32-71 (161)
32 PF05957 DUF883: Bacterial pro 24.1 4.2E+02 0.0092 22.0 9.3 12 66-77 10-21 (94)
33 PF06698 DUF1192: Protein of u 23.7 1.8E+02 0.0039 23.3 4.7 36 64-100 24-59 (59)
34 PF05103 DivIVA: DivIVA protei 22.8 9.5 0.00021 33.2 -3.0 44 38-81 16-59 (131)
35 PF11657 Activator-TraM: Trans 22.7 6.3E+02 0.014 23.6 9.5 14 67-80 45-58 (144)
36 TIGR00470 sepS O-phosphoseryl- 21.7 1E+02 0.0022 34.3 3.9 87 264-355 37-143 (533)
37 PF08579 RPM2: Mitochondrial r 21.6 1.3E+02 0.0028 27.4 3.9 53 325-380 15-78 (120)
38 PRK08241 RNA polymerase factor 20.6 1.1E+02 0.0025 30.7 3.8 53 313-365 188-243 (339)
39 PF08826 DMPK_coil: DMPK coile 20.6 1.6E+02 0.0034 23.7 3.8 31 50-80 28-58 (61)
40 PHA01794 hypothetical protein 20.2 4.2E+02 0.0091 24.6 6.8 40 47-89 71-110 (134)
No 1
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-71 Score=559.14 Aligned_cols=369 Identities=25% Similarity=0.414 Sum_probs=313.8
Q ss_pred cCCccchhhccccCCC-CCCCcccHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhh
Q 013445 26 QGSSTRLRLVSANGYS-SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDG 104 (443)
Q Consensus 26 ~~~~~r~~~~~~~~ys-~~Rr~sff~~f~d~iK~E~~KNkElqeniK~l~eea~kL~~s~e~lK~r~k~~a~~~~K~V~~ 104 (443)
+++..|+.+.+.++|| ++||.|||++|+||||+||+||||||+|||+|++++++|+++ |+|| .||++|..+
T Consensus 41 ~~~~ar~~~~q~~~yss~~~r~s~ls~f~dn~r~E~~knkElqe~iK~lkd~a~~L~es-da~k-----kaR~k~~~~-- 112 (459)
T KOG2580|consen 41 TRLGARLPFSQTRGYSSPGRRRSFLSEFSDNVRAELDKNKELQESIKKLKDRAGELEES-DALK-----KARTKYETA-- 112 (459)
T ss_pred hcccccccccccccccCCCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhccc-hHHH-----HHHHHHHHH--
Confidence 3678888888999999 589999999999999999999999999999999999999999 5665 599999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCccCCcccccccccCchhhhhhhcccCccchhhhccccccCC
Q 013445 105 VWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSIS 184 (443)
Q Consensus 105 a~~esE~~~~k~s~~~k~ki~~a~e~vk~t~~~~k~~~s~s~~~~~~~~~~~~~~e~~~~a~~~~d~a~s~~~~f~~~~~ 184 (443)
|++++++|+.++.+++++.|.|+... +++++|.-. .+.+++.+|+.++|++++++-+++|++|.++..
T Consensus 113 -----e~~t~~~s~~~kk~~~e~~e~~k~~~----~ea~eS~~~---k~t~~~~~e~~kqA~~sae~vd~~~~kv~~T~~ 180 (459)
T KOG2580|consen 113 -----ESETQASSEVLKKKLGELKETVKLGA----EEAWESALG---KKTKEAVEEAQKQASGSAEEVDTFFEKVGQTAA 180 (459)
T ss_pred -----HhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHhhhhh---ccchhhHHHHHHHhhcchhhhhHhhhhhhhhhh
Confidence 88899999999999999988888875 466765422 277778889999999999877777777777766
Q ss_pred ChhhhHHHHHhHHHHHHHHHHhhhhhhcccccCCCCcccccCCCCCCCCCCCCCc-ccceEEecCcchhHHH-HHHhhcC
Q 013445 185 SPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKST-RTDLVVTPSKKSMWSK-LKEKMQG 262 (443)
Q Consensus 185 ~~~~se~~~klr~~~~~~~~k~g~~~vkeEl~~~~~~RKr~~~~~~~~~~~e~~~-~t~vv~~~~k~s~W~~-~k~~~~~ 262 (443)
+|.||+.+..+++ -++.++.|..+||++....|++.+..+..++++.++|+++ +++|| +|++|+||+ |++|+++
T Consensus 181 yk~vSe~~~~vkk--~~d~s~~g~~i~k~~~r~lr~r~~~~~~~~~~~~~~E~n~~a~~vv--~h~~skw~~kwe~fkek 256 (459)
T KOG2580|consen 181 YKAVSEVMETVKK--EIDSSRYGLDIVKERPRKLRKRTEFLGDTFPSEKVGEPNEEAEGVV--LHKDSKWYQKWEDFKEK 256 (459)
T ss_pred HHHHHHHHHhhcc--cchhhhhhhhchhhhhhhchhhhhhhccCCCcccccCCCcceeeEE--eccchHHHHHHHHHHhc
Confidence 6666666666654 3466666666666666654444445556666777777654 45544 699999999 9999999
Q ss_pred CccchhhccccccccccchhchHHhhhhhcccccchhh-------hhhhccccccCcchHHHHHHHHHHhCCCCChhhHH
Q 013445 263 YPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVH-------KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFV 335 (443)
Q Consensus 263 ~pi~~~~~g~~~pv~~k~~e~~ed~r~~~EeSDNPlV~-------ki~dI~d~lf~eTe~a~vL~eIk~~DPsFd~~~Fl 335 (443)
|.++++|. +|+..||+||||+|. +|.++.+++|.+|+++++|++|+++||+||.++|+
T Consensus 257 ~~~~~k~~---------------~lk~~ydeseN~~i~~~rdvtdki~~~~~g~fsktE~Sev~tei~~iDPsF~~~~Fl 321 (459)
T KOG2580|consen 257 NVVVRKFQ---------------ELKKKYDESENPSIRASRDVTDKITDVDGGLFSKTEMSEVLTEIKKIDPSFDKEDFL 321 (459)
T ss_pred ccchHHHH---------------HHHhhccccccHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHhcCCCCCcHHHH
Confidence 99999999 999999999999994 55556668999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCeecceeeecccccchhh------hhheehhhcc
Q 013445 336 SEVQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRVNEFVKFYHFLF------VCFFFFFWLS 408 (443)
Q Consensus 336 ~gar~ai~p-ILeAf~kGD~e~LK~wcseavyn~faa~I~~R~~~Gl~~DskILdI~~i~~~~~------~~~~~~~~~~ 408 (443)
+.|+++|+| ||+||.+||+++||+||+|++|++|+++|++++++|+.+|++||||..++-+++ |.++++ |+
T Consensus 322 r~~ee~IiPnVLeAyvkGD~evLK~wcsea~~~~~aa~~keykk~gv~~d~kILdI~~Vdia~~KmM~d~PVlIit--Fq 399 (459)
T KOG2580|consen 322 RECEEYIIPNVLEAYVKGDLEVLKKWCSEAPFSQLAAPIKEYKKHGVYFDSKILDIRGVDIASGKMMEDGPVLIIT--FQ 399 (459)
T ss_pred HHHHHhhhHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHHHHHhcCeeecceeeeeccchhHHhhhhccCCEEEEE--Ee
Confidence 999999999 999999999999999999999999999999999999999999999999988766 666653 57
Q ss_pred CccceeeeecccchhhhhhhccccccCCc
Q 013445 409 SSDCHFISIHLGTLGVCKSLLLHIQPSNL 437 (443)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
.+.-||.++--|- |++|-.|+|+..+.
T Consensus 400 aQeI~~vRd~~Ge--vveGd~d~i~~v~y 426 (459)
T KOG2580|consen 400 AQEIMCVRDAKGE--VVEGDPDKILRVYY 426 (459)
T ss_pred eEEEEEEEcCCCc--eecCCCCceeeEEe
Confidence 7888999999999 99999999998653
No 2
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=100.00 E-value=3.5e-63 Score=504.22 Aligned_cols=325 Identities=18% Similarity=0.305 Sum_probs=269.5
Q ss_pred HHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 013445 54 KKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKG 133 (443)
Q Consensus 54 d~iK~E~~KNkElqeniK~l~eea~kL~~s~e~lK~r~k~~a~~~~K~V~~a~~esE~~~~k~s~~~k~ki~~a~e~vk~ 133 (443)
||||+||+||+|||||||+|++++++|+++ |+|| .||++|+.+ |+++.++|+++++++.+..+.|.+
T Consensus 1 d~~k~E~~kskE~~enik~l~~~~~~~~es-ea~k-----~ar~~y~~~-------~~~~~~~s~~~~~~l~~~~~~v~~ 67 (378)
T TIGR00984 1 DTFRDELQKSQELQESIKQLQDRSGKLNES-DALK-----KARKAYEKA-------ESGTLKSSEVVGKTLGKLGDTMKK 67 (378)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHhhhhhh-HHHH-----HHHHHHHHH-------hcccchhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999998 7998 699999999 777889999999999999999998
Q ss_pred hhcccccccCccCCcccccccccCchhhhhhhcccCccchhhhccccccCCChhhhHHHHHhHHHHHHHHHHhhhhhhcc
Q 013445 134 TFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKD 213 (443)
Q Consensus 134 t~~~~k~~~s~s~~~~~~~~~~~~~~e~~~~a~~~~d~a~s~~~~f~~~~~~~~~se~~~klr~~~~~~~~k~g~~~vke 213 (443)
... ++.+|. ..+ + ........+++.+ ++++++++.+|+|++|+.+|++++.+|+
T Consensus 68 ~~~----~~~~s~--~~k-~---~~~~~~~ta~~~~----------------~~~~~~~~~v~~T~~yk~vs~~~~~~k~ 121 (378)
T TIGR00984 68 MAH----KAWESE--LGK-K---MKKAGAETAKTAA----------------EHVDKSAEPVRDTAVYKHVSQSMKDGKD 121 (378)
T ss_pred HHH----HHhhcH--HHH-H---HHHHHHHHhhhhh----------------hhHHHhcccccccHHHHHHHHHHHhhhc
Confidence 864 334432 101 1 1122222333332 2489999999999999999999999999
Q ss_pred cccCC----------C-CcccccCCCCC-CCCC-CCCCcccceEEecCcchhHHH-HHHhhcCCccchhhcccccccccc
Q 013445 214 ELSGS----------P-SKRKHLEYTPS-PSWT-GEKSTRTDLVVTPSKKSMWSK-LKEKMQGYPVFKRITGISEPVVTK 279 (443)
Q Consensus 214 El~~~----------~-~~RKr~~~~~~-~~~~-~e~~~~t~vv~~~~k~s~W~~-~k~~~~~~pi~~~~~g~~~pv~~k 279 (443)
|++.. | .+|+|.+..+. ...+ .+|+++|+++| ||+|+|++ |.+|+++||++++|+
T Consensus 122 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~n~~a~~v~~--~k~s~~~~~w~~fk~~~~~~~~~~--------- 190 (378)
T TIGR00984 122 SSRYGFIADKEQRRRPRELTKRTDGRDFAKSRVVEANESVTDVVL--HSDSSWYSKVEDFKESNVVYRKIQ--------- 190 (378)
T ss_pred ccccccccchhhhhhHHHhhhhhcccccccccccccCCcccceEE--ecccHHHHHHHHHHhhCHHHHHHH---------
Confidence 98863 1 12344333321 2233 55677899765 99999999 999999999999999
Q ss_pred chhchHHhhhhhcccccchhhhhhhccc-------cccCcchHHHHHHHHHHhCCCCChhhHHHHHHHHHHH-HHHHHHh
Q 013445 280 GQEIAEDVRERWETSDNPIVHKIQDMNE-------TIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VLSAYMK 351 (443)
Q Consensus 280 ~~e~~ed~r~~~EeSDNPlV~ki~dI~d-------~lf~eTe~a~vL~eIk~~DPsFd~~~Fl~gar~ai~p-ILeAf~k 351 (443)
|||++||+||||+|+.+|+|+| +||++|+++.+|++|+++||+||+++|+++|+.||.| ||+||++
T Consensus 191 ------~lk~~~~eSeNp~i~~~r~itdkv~~~~~~lF~ete~a~~l~eIk~~DPsFd~~~Fl~gar~aI~p~ILeAf~k 264 (378)
T TIGR00984 191 ------ELKKKYDESENPLVRMMRGVTDKIGGVFSGMFSETEVSEVLTEFKKIDPTFDKEHFLRFLREYIVPEILEAYVK 264 (378)
T ss_pred ------HHHHHhhcccChhhhHhHHhhhhhhhhhhcccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999987666555 5999999999999999999999999999999999766 9999999
Q ss_pred CCHHHHhhhcCHHHHHHHHHHHHHHHHCCCeecceeeecccccchhhh------hheehhhccCccceeeeecc-cchhh
Q 013445 352 GDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRVNEFVKFYHFLFV------CFFFFFWLSSSDCHFISIHL-GTLGV 424 (443)
Q Consensus 352 GD~e~LK~wcseavyn~faa~I~~R~~~Gl~~DskILdI~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~ 424 (443)
||+++||+||++++|++|+++|++|+++|+++|++||+|.+++-+.+= +-.+++-|..+++||+++.- |. |
T Consensus 265 GD~e~LK~~lse~vy~~f~a~I~qr~~~G~~~d~~iL~I~~veI~~ak~~e~~~~pviiV~F~aQqI~~vRd~~tGe--V 342 (378)
T TIGR00984 265 GDLEVLKSWCSEAPFSVYATVVKEYKKMGVSTKGRILDIRGVEIASGKLLEPGDIPVLIVTFRAQEINVTKNAKSGE--V 342 (378)
T ss_pred CCHHHHHHhhCHHHHHHHHHHHHHHHHCCCeeeeEEeeecCeEEEEEEecCCCCeEEEEEEEEEEEEEEEEcCCCCc--e
Confidence 999999999999999999999999999999999999999877654431 12244457789999999999 99 9
Q ss_pred hhhhccccccCC
Q 013445 425 CKSLLLHIQPSN 436 (443)
Q Consensus 425 ~~~~~~~~~~~~ 436 (443)
++|..++|+...
T Consensus 343 VeGd~d~I~~v~ 354 (378)
T TIGR00984 343 VAGDPDNIQRIN 354 (378)
T ss_pred eeCCCCceeEEE
Confidence 999999998653
No 3
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=99.68 E-value=4.2e-17 Score=144.40 Aligned_cols=118 Identities=27% Similarity=0.332 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHhCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCeecceeeeccccc
Q 013445 315 AAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRVNEFVKFY 394 (443)
Q Consensus 315 ~a~vL~eIk~~DPsFd~~~Fl~gar~ai~pILeAf~kGD~e~LK~wcseavyn~faa~I~~R~~~Gl~~DskILdI~~i~ 394 (443)
.|.++++|+++||+||+..|+.+++.+|.||++||.+||++.|++||++++|+.|...|++|...|...+.+++.|.+++
T Consensus 1 ~a~a~~~i~~~dp~Fd~~~F~~~ak~~f~~i~~A~~~~D~~~l~~~~t~~~~~~~~~~i~~~~~~g~~~~~~~v~i~~~~ 80 (147)
T PF04280_consen 1 LASAIKQIKQRDPGFDPAAFLEEAKEAFLPIQEAWAKGDLEALRPLLTEELYERLQAEIKARRSRGEVNDPEIVRIDNAE 80 (147)
T ss_dssp -HHHHCCHHHH-TT--HHHHHHHHHHTHHHHHHHHHHT-HHHHHHHB-HHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred CchHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhCHHHHHHHHHHHHHHHHcCCcccceEEEEEEEE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999997775
Q ss_pred chhh----hhheehhhccCccceeeeecccchhhhhhhcccccc
Q 013445 395 HFLF----VCFFFFFWLSSSDCHFISIHLGTLGVCKSLLLHIQP 434 (443)
Q Consensus 395 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (443)
-+.+ -.-.+++-+.+.+.||+.+..|. |+.|..+.+++
T Consensus 81 i~~~~~~~~~~~vtv~f~~~~~~~~~d~~G~--ii~G~~~~~~~ 122 (147)
T PF04280_consen 81 IVEAEQEGNFDQVTVRFRSQQIDYVDDKDGE--IIEGDPDKIQE 122 (147)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEEETTTCT--CCCCSTTS-EE
T ss_pred eeeceeeCCEEEEEEEEEEEEEEEEECCCCc--EeeCCCCCceE
Confidence 4332 11112223445556669999999 89997776654
No 4
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.23 E-value=1.7e-11 Score=121.74 Aligned_cols=118 Identities=21% Similarity=0.200 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHhCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCeecceeeec--c
Q 013445 314 DAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRVNEF--V 391 (443)
Q Consensus 314 e~a~vL~eIk~~DPsFd~~~Fl~gar~ai~pILeAf~kGD~e~LK~wcseavyn~faa~I~~R~~~Gl~~DskILdI--~ 391 (443)
..+.+++.+...||+|++..||.+++.+|++|++||..||+++|+.++++++|+.|.++|-+|+..|.+.+++.|+| .
T Consensus 132 ~~~ag~~~v~~~~~~f~p~~fl~~a~~a~~~Iq~a~~~~D~~tL~~L~tpev~~~~~~e~~e~~~~G~~~~ssfv~~~~~ 211 (281)
T COG4395 132 PLAAGARAVHNADPSFDPARFLNGARAAYEMIQQAYGAGDRKTLRELLTPEVMEYLEAEIAERESKGETNQSSFVTILQA 211 (281)
T ss_pred ccccchhhhhcCCcccchhHHHHHHHHHHHHHHHHhhhccHHHHHHhcCHHHHHHHHHHHhhhhhcCccccceecchhhh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred cccchhh----hhheehhhccCccceeeeecccchhhhhhhccccccC
Q 013445 392 KFYHFLF----VCFFFFFWLSSSDCHFISIHLGTLGVCKSLLLHIQPS 435 (443)
Q Consensus 392 ~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (443)
+|+++.- --..+-|..+.+..| +|+.|. ||+|-.+++++.
T Consensus 212 di~~a~~~~~~~~atv~~~~~~i~~~--~dr~G~--vVdGd~~~~~e~ 255 (281)
T COG4395 212 DIARADVEGDEDYATVAIRYQGIDVT--RDRSGK--VVDGDPDKPEEF 255 (281)
T ss_pred hhhhccccCCceEEEEEEEeeeeeee--ccccCc--eecCCCCcchhh
Confidence 4544332 223344556777777 788999 999987777654
No 5
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=5.8e-07 Score=93.66 Aligned_cols=251 Identities=16% Similarity=0.139 Sum_probs=150.6
Q ss_pred ccHHHHHHHHH--HHhhhC-hhhHHHHHHHHHHHHHHhhhHH-HHHHh---------hHHH----HHHHHHhhhhhh---
Q 013445 47 SVFKEFSKKIK--GEAESN-PEFKHSVKELKKKAEEIKGVKE-ELKER---------TKQT----TEQLYKQVDGVW--- 106 (443)
Q Consensus 47 sff~~f~d~iK--~E~~KN-kElqeniK~l~eea~kL~~s~e-~lK~r---------~k~~----a~~~~K~V~~a~--- 106 (443)
.|+.+|..-+. +|++.| ++||+...+| ++.+.|+.|++ |.+++ |+++ .+..-.-+.++|
T Consensus 67 ~f~dn~r~E~~knkElqe~iK~lkd~a~~L-~esda~kkaR~k~~~~e~~t~~~s~~~kk~~~e~~e~~k~~~~ea~eS~ 145 (459)
T KOG2580|consen 67 EFSDNVRAELDKNKELQESIKKLKDRAGEL-EESDALKKARTKYETAESETQASSEVLKKKLGELKETVKLGAEEAWESA 145 (459)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444443 344444 5677777777 44566666665 44441 1111 223333556677
Q ss_pred -----hhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCccCCcccccccccCchhhhhhhcccCccchhhhccccc
Q 013445 107 -----MEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKS 181 (443)
Q Consensus 107 -----~esE~~~~k~s~~~k~ki~~a~e~vk~t~~~~k~~~s~s~~~~~~~~~~~~~~e~~~~a~~~~d~a~s~~~~f~~ 181 (443)
.++..+++|--..+.+.++.++++|++|..|++. |++.... + ++...+.||.+..
T Consensus 146 ~~k~t~~~~~e~~kqA~~sae~vd~~~~kv~~T~~yk~v--Se~~~~v----------------k--k~~d~s~~g~~i~ 205 (459)
T KOG2580|consen 146 LGKKTKEAVEEAQKQASGSAEEVDTFFEKVGQTAAYKAV--SEVMETV----------------K--KEIDSSRYGLDIV 205 (459)
T ss_pred hhccchhhHHHHHHHhhcchhhhhHhhhhhhhhhhHHHH--HHHHHhh----------------c--ccchhhhhhhhch
Confidence 2222333333335678899999999998765555 4432111 1 2333677888888
Q ss_pred cCCChhhhHHHHHhHHHHHHHHHHhhhhhhcccccCCCCcccccCCCC-CCCCCCCCCcccceEEecCcchhHHHHHHhh
Q 013445 182 SISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTP-SPSWTGEKSTRTDLVVTPSKKSMWSKLKEKM 260 (443)
Q Consensus 182 ~~~~~~~se~~~klr~~~~~~~~k~g~~~vkeEl~~~~~~RKr~~~~~-~~~~~~e~~~~t~vv~~~~k~s~W~~~k~~~ 260 (443)
+ +..+++|+..-+ +...|+ .+.+. +++++.--..-++ .....+|+.|+++.
T Consensus 206 k-------~~~r~lr~r~~~-------------~~~~~~----~~~~~E~n~~a~~vv~h~~----skw~~kwe~fkek~ 257 (459)
T KOG2580|consen 206 K-------ERPRKLRKRTEF-------------LGDTFP----SEKVGEPNEEAEGVVLHKD----SKWYQKWEDFKEKN 257 (459)
T ss_pred h-------hhhhhchhhhhh-------------hccCCC----cccccCCCcceeeEEeccc----hHHHHHHHHHHhcc
Confidence 8 888888885211 122111 11111 2223322222333 36799999999999
Q ss_pred cCCccchhhccccccccccchhchHHhhhhhcccccchhhhhhhc--------cccccCcchHHHHHHH-----HHHhCC
Q 013445 261 QGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDM--------NETIFQETDAAASIKE-----IRRRDP 327 (443)
Q Consensus 261 ~~~pi~~~~~g~~~pv~~k~~e~~ed~r~~~EeSDNPlV~ki~dI--------~d~lf~eTe~a~vL~e-----Ik~~DP 327 (443)
.-.|.++++-+.-+|..++..++.+|++++|..++||+++++..- +|--|+..+..+-+++ |..+--
T Consensus 258 ~~~~k~~~lk~~ydeseN~~i~~~rdvtdki~~~~~g~fsktE~Sev~tei~~iDPsF~~~~Flr~~ee~IiPnVLeAyv 337 (459)
T KOG2580|consen 258 VVVRKFQELKKKYDESENPSIRASRDVTDKITDVDGGLFSKTEMSEVLTEIKKIDPSFDKEDFLRECEEYIIPNVLEAYV 337 (459)
T ss_pred cchHHHHHHHhhccccccHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999887653 2333555544333332 333334
Q ss_pred CCChhhHHHHHHHHHHHHH
Q 013445 328 SFSLPDFVSEVQEAIRPVL 346 (443)
Q Consensus 328 sFd~~~Fl~gar~ai~pIL 346 (443)
.+|++-...-|-++-.-++
T Consensus 338 kGD~evLK~wcsea~~~~~ 356 (459)
T KOG2580|consen 338 KGDLEVLKKWCSEAPFSQL 356 (459)
T ss_pred hccHHHHHHHHhhhHHHHH
Confidence 5677766666666554443
No 6
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=97.06 E-value=0.0014 Score=68.46 Aligned_cols=100 Identities=17% Similarity=0.254 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHhhhHH-HHHH-------------hhHHHHHHHHHhhhhhhhhhh---hhHHHHH---HHHHHHH
Q 013445 65 EFKHSVKELKKKAEEIKGVKE-ELKE-------------RTKQTTEQLYKQVDGVWMEAE---STVKKVS---ASMKEKI 124 (443)
Q Consensus 65 ElqeniK~l~eea~kL~~s~e-~lK~-------------r~k~~a~~~~K~V~~a~~esE---~~~~k~s---~~~k~ki 124 (443)
-||+...+| ++.+-|++|++ |.++ -++.++...-+.++.+| ++| ..+..++ ..+.++|
T Consensus 19 ~l~~~~~~~-~esea~k~ar~~y~~~~~~~~~~s~~~~~~l~~~~~~v~~~~~~~~-~s~~~k~~~~~~~~ta~~~~~~~ 96 (378)
T TIGR00984 19 QLQDRSGKL-NESDALKKARKAYEKAESGTLKSSEVVGKTLGKLGDTMKKMAHKAW-ESELGKKMKKAGAETAKTAAEHV 96 (378)
T ss_pred HHHHHHhhh-hhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhhhhhhhH
Confidence 466666666 45666766666 4443 34456666666888888 555 1111111 1235899
Q ss_pred HHHHHhhhhhhcccccccCccCCcccccccccCchhhhhhhcccCcc-chhhhccccccCCChhhhHHHHHhHH
Q 013445 125 SAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDT-AETFYGKLKSSISSPKFTLAFQKLKE 197 (443)
Q Consensus 125 ~~a~e~vk~t~~~~k~~~s~s~~~~~~~~~~~~~~e~~~~a~~~~d~-a~s~~~~f~~~~~~~~~se~~~klr~ 197 (443)
+++++||++|.+|+.. |++. +++ +++.||+|..+ +.+++.++
T Consensus 97 ~~~~~~v~~T~~yk~v--s~~~----------------------~~~k~~~~~~~~~~~-------~~~r~~~~ 139 (378)
T TIGR00984 97 DKSAEPVRDTAVYKHV--SQSM----------------------KDGKDSSRYGFIADK-------EQRRRPRE 139 (378)
T ss_pred HHhcccccccHHHHHH--HHHH----------------------Hhhhcccccccccch-------hhhhhHHH
Confidence 9999999999765443 4432 223 45779999998 88888776
No 7
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=90.10 E-value=0.39 Score=44.79 Aligned_cols=30 Identities=33% Similarity=0.555 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhh-ChhhHHHHHHHHHHHH
Q 013445 49 FKEFSKKIKGEAES-NPEFKHSVKELKKKAE 78 (443)
Q Consensus 49 f~~f~d~iK~E~~K-NkElqeniK~l~eea~ 78 (443)
++.++.+|.+|+.+ |+++.+-++.|+....
T Consensus 43 l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~ 73 (155)
T PF07464_consen 43 LQNVSSSLQEEIKDANPEAEEALKQLKTKLE 73 (155)
T ss_dssp HHHHHHHHHHHHTT-SSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Confidence 78899999999999 9999999999887743
No 8
>PF07961 MBA1: MBA1-like protein; InterPro: IPR024621 Mba1 is an inner membrane protein that is part of the mitochondrial protein export machinery [, ]. It binds to the large subunit of mitochondrial ribosomes and cooperates with the C-terminal ribosome-binding domain of Oxa1, which is a central component of the insertion machinery of the inner membrane. In the absence of both Mba1 and the C terminus of Oxa1, mitochondrial translation products fail to be properly inserted into the inner membrane and serve as substrates of the matrix chaperone Hsp70 []. It is proposed that Mba1 functions as a ribosome receptor that cooperates with Oxa1 in the positioning of the ribosome exit site to the insertion machinery of the inner membrane [].
Probab=87.89 E-value=1.3 Score=44.09 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=54.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCeecceeeecccccc
Q 013445 329 FSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRVNEFVKFYH 395 (443)
Q Consensus 329 Fd~~~Fl~gar~ai~pILeAf~kGD~e~LK~wcseavyn~faa~I~~R~~~Gl~~DskILdI~~i~~ 395 (443)
+....|...|.+-|+-+=+||+.||++.|+..|+..+|+.|.+-+.+|= .|..++=+++.+.+.-.
T Consensus 67 ~~f~~wk~~AiE~yv~~NkaFA~~~~~~L~~~c~~~v~~sL~~R~~~~P-~~~kl~W~L~k~~~~PK 132 (235)
T PF07961_consen 67 PRFNEWKNKAIELYVQMNKAFAAGDLDKLRKICSSWVYESLAARIKQRP-KNSKLDWKLVKYNKNPK 132 (235)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHHHHHHHHhCC-CCCeeeEEEEEecCCCe
Confidence 3456788888888888999999999999999999999999999999887 44577766666655533
No 9
>PRK01919 tatB sec-independent translocase; Provisional
Probab=63.36 E-value=27 Score=33.41 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=11.9
Q ss_pred ccHHHHHHHHHHHhhhChh
Q 013445 47 SVFKEFSKKIKGEAESNPE 65 (443)
Q Consensus 47 sff~~f~d~iK~E~~KNkE 65 (443)
+=|..+++.+|+|++.--|
T Consensus 37 ~k~Rr~~~d~K~ev~~E~e 55 (169)
T PRK01919 37 GRAQRYINDVKAEVSREIE 55 (169)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4466777777777764433
No 10
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=59.60 E-value=91 Score=26.06 Aligned_cols=17 Identities=18% Similarity=0.517 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHh
Q 013445 65 EFKHSVKELKKKAEEIK 81 (443)
Q Consensus 65 ElqeniK~l~eea~kL~ 81 (443)
+|++.|.+|+++++.|-
T Consensus 2 ~l~~~l~~l~~d~~~l~ 18 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLA 18 (94)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56777888888877773
No 11
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=51.12 E-value=2e+02 Score=26.89 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHHHHHHHHHH-hhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 013445 49 FKEFSKKIKGEAESNPEFKHSVKELKKKAEEI-KGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISA 126 (443)
Q Consensus 49 f~~f~d~iK~E~~KNkElqeniK~l~eea~kL-~~s~e~lK~r~k~~a~~~~K~V~~a~~esE~~~~k~s~~~k~ki~~ 126 (443)
+..=-+.|.++++.=...++...++.++.++. ++++..-..-+.++-++.-+..+++.++++.++.+.-+..+..|..
T Consensus 33 LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~ 111 (154)
T PRK06568 33 LDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQN 111 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444678888888888888888888877665 4443222222333444444455555555555555554444444433
No 12
>COG1422 Predicted membrane protein [Function unknown]
Probab=45.77 E-value=37 Score=33.28 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHH
Q 013445 47 SVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKE 85 (443)
Q Consensus 47 sff~~f~d~iK~E~~KNkElqeniK~l~eea~kL~~s~e 85 (443)
|++..+...+==..+|=+|+|+-+|+|+++-.+.+++.+
T Consensus 58 gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d 96 (201)
T COG1422 58 GLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGD 96 (201)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 778888888888888999999999999999888866543
No 13
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=45.28 E-value=42 Score=33.78 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHhCCHHHHhhhcCHHH
Q 013445 314 DAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (443)
Q Consensus 314 e~a~vL~eIk~~DPsFd~~~Fl~gar~ai~pILeAf~kGD~e~LK~wcseav 365 (443)
-+..+.+.|+...|.|.+.. ..-+..+.-.+.|+..||.+.|..+|++++
T Consensus 154 ~l~RAr~~Lr~~~~~~~~~~--~~~~~~~~~f~~a~~~gd~~~l~~ll~~d~ 203 (290)
T PRK09635 154 LAHRARRKINESRIAASVEP--AQHRVVTRAFIEACSNGDLDTLLEVLDPGV 203 (290)
T ss_pred HHHHHHHHHHhhCCCCCCCh--HHHHHHHHHHHHHHHhCCHHHHHHHhhhhh
Confidence 35677888888888776431 233344444999999999999999999998
No 14
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=43.83 E-value=89 Score=30.17 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHh
Q 013445 52 FSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQ 101 (443)
Q Consensus 52 f~d~iK~E~~KNkElqeniK~l~eea~kL~~s~e~lK~r~k~~a~~~~K~ 101 (443)
|-++++.|+++|+| .++++.++.....+. ++|..|.++.+.++...
T Consensus 98 f~ek~~ReId~t~e---~l~k~~~e~~~~~~~-~~~~~~~ke~~~~l~~~ 143 (177)
T COG1510 98 FEEKWKREIDPTKE---ALKKLLEELNEDLDD-RDLTERIKEIKSKLERL 143 (177)
T ss_pred HHHHHHHHhhhHHH---HHHHHHHHccccccc-hhhhHHHHHHHHHHHHH
Confidence 44888999999987 588888887777774 46766666665555543
No 15
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.89 E-value=1.2e+02 Score=32.10 Aligned_cols=72 Identities=22% Similarity=0.190 Sum_probs=42.2
Q ss_pred cHHHHHHH----HHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 013445 48 VFKEFSKK----IKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEK 123 (443)
Q Consensus 48 ff~~f~d~----iK~E~~KNkElqeniK~l~eea~kL~~s~e~lK~r~k~~a~~~~K~V~~a~~esE~~~~k~s~~~k~k 123 (443)
+.+-..+. .++||+.+.-+|++||.+.|+..+-.+==++.+.+|.|..-.+ ++-.++++.|
T Consensus 211 visa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L---------------~~niDIL~~k 275 (365)
T KOG2391|consen 211 VISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSL---------------QKNIDILKSK 275 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH---------------HhhhHHHHHH
Confidence 44444444 5689999999999999998885443220012222333333333 3333477777
Q ss_pred HHHHHHhhhhh
Q 013445 124 ISAATEEVKGT 134 (443)
Q Consensus 124 i~~a~e~vk~t 134 (443)
+.++-++.+++
T Consensus 276 ~~eal~~~~n~ 286 (365)
T KOG2391|consen 276 VREALEKAENL 286 (365)
T ss_pred HHHHHhhhccC
Confidence 77777776663
No 16
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=38.85 E-value=54 Score=32.52 Aligned_cols=50 Identities=18% Similarity=0.353 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHhCCHHHHhhhcCHHH
Q 013445 314 DAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (443)
Q Consensus 314 e~a~vL~eIk~~DPsFd~~~Fl~gar~ai~pILeAf~kGD~e~LK~wcseav 365 (443)
-+..+.+.|+..-|.|.... ..-+..+.-.++|+..||.+.|..+|++++
T Consensus 144 ~l~RAr~~Lr~~~~~~~~~~--~~~~~~~~~f~~a~~~gD~~~l~~lL~~dv 193 (281)
T TIGR02957 144 LVSRARRHLDARRPRFEVSR--EESRQLLERFVEAAQTGDLDGLLELLAEDV 193 (281)
T ss_pred HHHHHHHHHHhhCCCCCCCh--HHHHHHHHHHHHHHHhCCHHHHHHHHhhce
Confidence 35677888888777665432 233445555999999999999999999987
No 17
>KOG2542 consensus Uncharacterized conserved protein (YdiU family) [Function unknown]
Probab=35.21 E-value=72 Score=34.59 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=54.7
Q ss_pred cchhhhhhhccc---cccCcchHHHHHHHHHHhCCCCChhhHHHHHHHHHHH-HHHHHHhCCHHHHhhh--cCHHHHHH
Q 013445 296 NPIVHKIQDMNE---TIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLKKY--CSPEVIER 368 (443)
Q Consensus 296 NPlV~ki~dI~d---~lf~eTe~a~vL~eIk~~DPsFd~~~Fl~gar~ai~p-ILeAf~kGD~e~LK~w--cseavyn~ 368 (443)
|-++.-++..+. ..-++++.|+...+.+++.|.|.+..|+ +|++|-. -++|+.+||...+|+. +.+-+|+.
T Consensus 390 new~kw~rny~~ry~~~~~~~g~aar~~~ekkanm~fvnpkyV--Lrnyi~q~ai~aaeegDfSevkkv~kl~~~Pye~ 466 (500)
T KOG2542|consen 390 NEWAKWLRNYRARYDKDLEGAGDAARWQAEKKANMHFVNPKYV--LRNYIAQNAIEAAEEGDFSEVKKVLKLLETPYEC 466 (500)
T ss_pred hHHHHHHHHHHHHHhhhccCccchHHHHHHhhccccccChHHH--HHHHHHHHHHHHHhccCHHHHHHHHHHhcCCccc
Confidence 455544444322 3456778899999999999999999998 6788888 8899999999999986 45666654
No 18
>PRK04654 sec-independent translocase; Provisional
Probab=31.93 E-value=1.6e+02 Score=29.17 Aligned_cols=27 Identities=19% Similarity=0.446 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 013445 49 FKEFSKKIKGEAESNPEFKHSVKELKKK 76 (443)
Q Consensus 49 f~~f~d~iK~E~~KNkElqeniK~l~ee 76 (443)
|+.+.+.|.+|++ ..||++.+++++..
T Consensus 43 ~~~vk~El~~El~-~~ELrk~l~~~~~~ 69 (214)
T PRK04654 43 WDSVKQELERELE-AEELKRSLQDVQAS 69 (214)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHHH
Confidence 5555555555543 35666665555443
No 19
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=30.91 E-value=4.2e+02 Score=24.20 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=16.7
Q ss_pred HHHHHHHhhhChhhHHHHHHHHHHHHHH
Q 013445 53 SKKIKGEAESNPEFKHSVKELKKKAEEI 80 (443)
Q Consensus 53 ~d~iK~E~~KNkElqeniK~l~eea~kL 80 (443)
-+.|.+.++.-.+.++...++.++.++.
T Consensus 55 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~ 82 (156)
T CHL00118 55 KEYIRKNLTKASEILAKANELTKQYEQE 82 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666665543
No 20
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=28.15 E-value=30 Score=38.29 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCeecceeeecccccchhhhhhee
Q 013445 342 IRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRVNEFVKFYHFLFVCFFF 403 (443)
Q Consensus 342 i~pILeAf~kGD~e~LK~wcseavyn~faa~I~~R~~~Gl~~DskILdI~~i~~~~~~~~~~ 403 (443)
..-...||.+|+..+||.+|...+==.+...|++|- -+=|=.+.||+..+++||.|
T Consensus 87 ~rKl~ka~~k~e~~~~k~L~~~~p~Y~lDhiIKERy------ptf~dAlrDlddaLsmlfLf 142 (570)
T KOG2481|consen 87 ARKLKKAYGKGEEETLRRLLDNKPTYKLDHIIKERY------PTFIDALRDLDDALSMLFLF 142 (570)
T ss_pred HHHHHHHhhcchHHHHHHHhhcCCccchhhHHHHhc------CcHHHHHHHHHHHHHHHHHH
Confidence 444778999999999999999888778888898874 22233469999999999986
No 21
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=27.04 E-value=66 Score=35.81 Aligned_cols=87 Identities=26% Similarity=0.410 Sum_probs=49.1
Q ss_pred CccchhhccccccccccchhchH-Hhhhhhcccccchhhhhhhcccc-----------------ccCcc--hHHHHHHHH
Q 013445 263 YPVFKRITGISEPVVTKGQEIAE-DVRERWETSDNPIVHKIQDMNET-----------------IFQET--DAAASIKEI 322 (443)
Q Consensus 263 ~pi~~~~~g~~~pv~~k~~e~~e-d~r~~~EeSDNPlV~ki~dI~d~-----------------lf~eT--e~a~vL~eI 322 (443)
.|-.+--.|..+|++...+.+.+ .+++-|+|--||+|---++|.-. +.-.+ =..+-+.+|
T Consensus 36 yp~~~~~~~~~hp~~~ti~~lr~ayl~~gf~e~~np~iv~~~~~~~qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i 115 (529)
T PRK06253 36 YPRLKPSYGKPHPVYDTIERLREAYLRMGFEEMINPVIVDEQDIYKQFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQI 115 (529)
T ss_pred CCcccccCCCCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHH
Confidence 34444456677777766554332 58889999999999555555432 21111 012234455
Q ss_pred HH-hCCCCChhhHHHHHHHHHHHHHHHHHhCCH
Q 013445 323 RR-RDPSFSLPDFVSEVQEAIRPVLSAYMKGDV 354 (443)
Q Consensus 323 k~-~DPsFd~~~Fl~gar~ai~pILeAf~kGD~ 354 (443)
.. +...++.+. .+.+..||-+|-+|+.
T Consensus 116 ~~~~~~~~~~~~-----~e~l~~~lh~ykkg~~ 143 (529)
T PRK06253 116 EEILGRDLSEEK-----IESLREVLHSYKKGEI 143 (529)
T ss_pred HHHhCCCCChhH-----HHHHHHHHHHhhcCCC
Confidence 54 333444433 4555567888877764
No 22
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=26.93 E-value=59 Score=27.64 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHhhhcCHHH--------------HHHHHHHHHHH---HHCCCeecceeeecc
Q 013445 337 EVQEAIRPVLSAYMKGDVETLKKYCSPEV--------------IERCKAEHTAY---QSHGIFFDNRVNEFV 391 (443)
Q Consensus 337 gar~ai~pILeAf~kGD~e~LK~wcseav--------------yn~faa~I~~R---~~~Gl~~DskILdI~ 391 (443)
.++..+.--++|+..||.+.|+..+++++ .+.|.+.++.+ ...+...+.+|+.|+
T Consensus 5 ~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~ 76 (116)
T PF12893_consen 5 AIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSID 76 (116)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEE
Confidence 34555555778888999999999988876 46888888887 567777777776653
No 23
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=26.08 E-value=1.3e+02 Score=25.30 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=27.6
Q ss_pred hhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHH
Q 013445 60 AESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTT 95 (443)
Q Consensus 60 ~~KNkElqeniK~l~eea~kL~~s~e~lK~r~k~~a 95 (443)
++.|+||+.-+..-++|.++|..--+.||.++..-+
T Consensus 4 i~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt 39 (76)
T PF11544_consen 4 IKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYT 39 (76)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999765567887655543
No 24
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=25.93 E-value=5.6e+02 Score=24.10 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=17.0
Q ss_pred HHHHHHHhhhChhhHHHHHHHHHHHHHH
Q 013445 53 SKKIKGEAESNPEFKHSVKELKKKAEEI 80 (443)
Q Consensus 53 ~d~iK~E~~KNkElqeniK~l~eea~kL 80 (443)
-+.|.+.++.-.++++...+++++.++.
T Consensus 64 ~~~I~~~l~~Ae~~~~eA~~~~~eye~~ 91 (181)
T PRK13454 64 QGTITNDLAAAEELKQKAVEAEKAYNKA 91 (181)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666665544
No 25
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=24.96 E-value=1.4e+02 Score=25.21 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhh
Q 013445 66 FKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQV 102 (443)
Q Consensus 66 lqeniK~l~eea~kL~~s~e~lK~r~k~~a~~~~K~V 102 (443)
+|+.+.+|+.+.++.....+..|+.+++..+++-+.+
T Consensus 2 L~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~~L 38 (85)
T PF14357_consen 2 LQELLEKLHQELEQNPPLDEETRAELSSLDDDIEAQL 38 (85)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544443444444444444444444
No 26
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=24.84 E-value=85 Score=28.42 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCCHHHHhhhcCHHHHHHHHH
Q 013445 339 QEAIRPVLSAYMKGDVETLKKYCSPEVIERCKA 371 (443)
Q Consensus 339 r~ai~pILeAf~kGD~e~LK~wcseavyn~faa 371 (443)
+.++.|.++ |+.+++.+|..+|.+++|.+.-.
T Consensus 1 e~ai~PL~d-yLd~nL~~L~~~L~~~~f~~vl~ 32 (137)
T PF10540_consen 1 EDAIEPLMD-YLDSNLSILASNLEKENFKRVLK 32 (137)
T ss_dssp HHHHHHHHH-HHCHHHHHHHHHS-HHHHHHHHH
T ss_pred CchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888766 88889999999999999986544
No 27
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=24.62 E-value=4.5e+02 Score=22.49 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=18.9
Q ss_pred HHHHHHHhhhChhhHHHHHHHHHHHHHH
Q 013445 53 SKKIKGEAESNPEFKHSVKELKKKAEEI 80 (443)
Q Consensus 53 ~d~iK~E~~KNkElqeniK~l~eea~kL 80 (443)
.+.|++++..-.+.++..+++.++.++.
T Consensus 32 ~~~I~~~~~~a~~~~~ea~~~~~e~~~~ 59 (132)
T PF00430_consen 32 KAKIQSELEEAEELKEEAEQLLAEYEEK 59 (132)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777666554
No 28
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.38 E-value=5.3e+02 Score=29.97 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=7.2
Q ss_pred CcccHHHHHHHHHHHh
Q 013445 45 QFSVFKEFSKKIKGEA 60 (443)
Q Consensus 45 r~sff~~f~d~iK~E~ 60 (443)
+.|+=...++.-+.=+
T Consensus 491 ~~Glp~~ii~~A~~~~ 506 (771)
T TIGR01069 491 RYGIPHFIIEQAKTFY 506 (771)
T ss_pred HhCcCHHHHHHHHHHH
Confidence 3355444444444433
No 29
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=24.30 E-value=6.3e+02 Score=27.28 Aligned_cols=31 Identities=3% Similarity=0.095 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHHHHHHHHH
Q 013445 49 FKEFSKKIKGEAESNPEFKHSVKELKKKAEE 79 (443)
Q Consensus 49 f~~f~d~iK~E~~KNkElqeniK~l~eea~k 79 (443)
+.+=-+.|+++++.-.+.++...+.+++.++
T Consensus 30 l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~ 60 (445)
T PRK13428 30 MAARQDTVRQQLAESATAADRLAEADQAHTK 60 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444466777777777777777777666443
No 30
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=24.22 E-value=1.1e+02 Score=30.26 Aligned_cols=50 Identities=26% Similarity=0.411 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHhCCHHHHhhhcCHHH
Q 013445 314 DAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (443)
Q Consensus 314 e~a~vL~eIk~~DPsFd~~~Fl~gar~ai~pILeAf~kGD~e~LK~wcseav 365 (443)
-+..+.+.++..-|.+.+ -...-+..+.-.+.||..||.+.|-.++++++
T Consensus 151 ~l~RAr~~Lr~~~~~~~~--~~~~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv 200 (293)
T PRK09636 151 LASRARKHVRAARPRFPV--SDEEGAELVEAFFAALASGDLDALVALLAPDV 200 (293)
T ss_pred HHHHHHHHHHhhCCCCCC--CchHHHHHHHHHHHHHHhCCHHHHHHHHhhCe
Confidence 456788888888776532 22233444555899999999999999988876
No 31
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=24.22 E-value=5.7e+02 Score=23.62 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=26.3
Q ss_pred cccHHHHHHHHHHHhhhChhhHHHHHHHHHHHH-HHhhhH
Q 013445 46 FSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE-EIKGVK 84 (443)
Q Consensus 46 ~sff~~f~d~iK~E~~KNkElqeniK~l~eea~-kL~~s~ 84 (443)
.++|.+--+.|++++..-..+++.-.++.++.+ +|++++
T Consensus 32 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar 71 (161)
T COG0711 32 LKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAR 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777788888888887777766666555443 334443
No 32
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=24.07 E-value=4.2e+02 Score=22.03 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHH
Q 013445 66 FKHSVKELKKKA 77 (443)
Q Consensus 66 lqeniK~l~eea 77 (443)
+.+.+..|-..+
T Consensus 10 l~~d~~~l~~~~ 21 (94)
T PF05957_consen 10 LRADLEDLARSA 21 (94)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 33
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.74 E-value=1.8e+02 Score=23.30 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHH
Q 013445 64 PEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYK 100 (443)
Q Consensus 64 kElqeniK~l~eea~kL~~s~e~lK~r~k~~a~~~~K 100 (443)
-||.+-|-.|+.|..+++... .-|.-.+.+|+.+||
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~-~~K~a~r~AAealFk 59 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAI-AKKSASRAAAEALFK 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence 488889999999988887643 334445557777775
No 34
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.78 E-value=9.5 Score=33.16 Aligned_cols=44 Identities=23% Similarity=0.490 Sum_probs=19.1
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHh
Q 013445 38 NGYSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIK 81 (443)
Q Consensus 38 ~~ys~~Rr~sff~~f~d~iK~E~~KNkElqeniK~l~eea~kL~ 81 (443)
|||.+.---+|+....+.+..=...|.+|+.-+..|+.+...++
T Consensus 16 rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 16 RGYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45552112244555555554444555555555555555544443
No 35
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=22.69 E-value=6.3e+02 Score=23.57 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 013445 67 KHSVKELKKKAEEI 80 (443)
Q Consensus 67 qeniK~l~eea~kL 80 (443)
++-+.+|+++.+.+
T Consensus 45 ~~~l~~fk~elE~~ 58 (144)
T PF11657_consen 45 QEQLDQFKEELEEI 58 (144)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555544
No 36
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=21.72 E-value=1e+02 Score=34.28 Aligned_cols=87 Identities=18% Similarity=0.298 Sum_probs=51.0
Q ss_pred ccchhhccccccccccchhchH-Hhhhhhcccccchhhhhhhcccc-----------------ccCcc--hHHHHHHHHH
Q 013445 264 PVFKRITGISEPVVTKGQEIAE-DVRERWETSDNPIVHKIQDMNET-----------------IFQET--DAAASIKEIR 323 (443)
Q Consensus 264 pi~~~~~g~~~pv~~k~~e~~e-d~r~~~EeSDNPlV~ki~dI~d~-----------------lf~eT--e~a~vL~eIk 323 (443)
|-.+--.|..+|++...+.+.+ .+++-|+|--||+|---++|.-. +.-.+ =..+-+.+|.
T Consensus 37 pr~~~~~gk~hpv~~ti~~lreayl~~gf~e~~np~iv~e~~v~kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~ 116 (533)
T TIGR00470 37 PRLKFVYGKPHPLMETIERLREAYLRMGFSEMVNPLIVDEMHIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIE 116 (533)
T ss_pred CcccccCCCCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHH
Confidence 3333334555555544443322 57888999999999555555432 21111 1234467777
Q ss_pred HhCCCCChhhHHHHHHHHHHHHHHHHHhCCHH
Q 013445 324 RRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVE 355 (443)
Q Consensus 324 ~~DPsFd~~~Fl~gar~ai~pILeAf~kGD~e 355 (443)
.+...++.+. .+.+..||-+|-+|..+
T Consensus 117 ~~g~~~~~~~-----~e~lr~~lh~ykkg~id 143 (533)
T TIGR00470 117 NLGIDIDDEK-----KERLREVFHLYKKGAID 143 (533)
T ss_pred HhCCCCChhH-----HHHHHHHHHHhhcCCCc
Confidence 7776666654 55566688888888643
No 37
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=21.60 E-value=1.3e+02 Score=27.38 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=41.3
Q ss_pred hCCCCChhhHHHHHHHHHHHHHHHHHhCCHHHH--------hhhc---CHHHHHHHHHHHHHHHHCC
Q 013445 325 RDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETL--------KKYC---SPEVIERCKAEHTAYQSHG 380 (443)
Q Consensus 325 ~DPsFd~~~Fl~gar~ai~pILeAf~kGD~e~L--------K~wc---seavyn~faa~I~~R~~~G 380 (443)
.+|+|+.+.|+.. -+-.|..+|..||...+ +.-| +-++||..-.+|..|.--+
T Consensus 15 ~e~~lne~~fL~t---~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~ 78 (120)
T PF08579_consen 15 TEPSLNEETFLET---QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS 78 (120)
T ss_pred chhhhhhhHHHHH---HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc
Confidence 4889999999864 47779999999998764 3445 7788998888888887444
No 38
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=20.58 E-value=1.1e+02 Score=30.71 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHhCCCCC---hhhHHHHHHHHHHHHHHHHHhCCHHHHhhhcCHHH
Q 013445 313 TDAAASIKEIRRRDPSFS---LPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (443)
Q Consensus 313 Te~a~vL~eIk~~DPsFd---~~~Fl~gar~ai~pILeAf~kGD~e~LK~wcseav 365 (443)
+-+..+++.|++.-|.+. +..+....+..+.-.++||.+||.+.|-.++++++
T Consensus 188 ~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv 243 (339)
T PRK08241 188 SALQRARATLAERGPSAADTLREPDDPEERALLARYVAAFEAYDVDALVALLTEDA 243 (339)
T ss_pred HHHHHHHHHHhhcCCCcccccCCCCChHHHHHHHHHHHHHhcCCHHHHHHHhcCCE
Confidence 345778888888655421 22355555556666889999999999999999876
No 39
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.58 E-value=1.6e+02 Score=23.69 Aligned_cols=31 Identities=29% Similarity=0.534 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhChhhHHHHHHHHHHHHHH
Q 013445 50 KEFSKKIKGEAESNPEFKHSVKELKKKAEEI 80 (443)
Q Consensus 50 ~~f~d~iK~E~~KNkElqeniK~l~eea~kL 80 (443)
-.|-..|++-=.+|.+|...|+.|+++.++|
T Consensus 28 ~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777777888888888888776554
No 40
>PHA01794 hypothetical protein
Probab=20.23 E-value=4.2e+02 Score=24.58 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHH
Q 013445 47 SVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKE 89 (443)
Q Consensus 47 sff~~f~d~iK~E~~KNkElqeniK~l~eea~kL~~s~e~lK~ 89 (443)
|=++.+++.|++||..+-=|+.-|++-=+- ++.+-+||++
T Consensus 71 ~~~e~lF~eleqEm~~SGFF~~ki~kyien---~EK~~~yl~~ 110 (134)
T PHA01794 71 GTTEGLFAELEKEMVDSGFFRAKIKKYIEN---MEKSARYLKA 110 (134)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhc
Confidence 447788888999999998888888777555 5555567875
Done!