Query 013445
Match_columns 443
No_of_seqs 214 out of 375
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qk9_A Mitochondrial import in 100.0 4.1E-40 1.4E-44 314.6 6.9 166 251-435 7-187 (222)
2 2cw9_A Translocase of inner mi 100.0 1.8E-28 6.3E-33 228.6 10.1 146 287-434 3-160 (194)
3 3s84_A Apolipoprotein A-IV; fo 39.3 2.6E+02 0.0089 26.8 11.5 17 86-102 70-86 (273)
4 3s84_A Apolipoprotein A-IV; fo 31.8 2.3E+02 0.008 27.2 9.7 52 85-136 91-142 (273)
5 2q6q_A Spindle POLE BODY compo 25.4 1.9E+02 0.0066 22.9 6.3 37 60-96 2-38 (74)
6 1ev7_A Type IIE restriction en 25.3 1E+02 0.0036 30.7 6.0 105 311-418 11-120 (317)
7 3dmc_A NTF2-like protein; stru 23.7 20 0.00068 30.0 0.5 30 335-364 11-40 (134)
8 2f86_B Hypothetical protein K1 22.5 23 0.00079 30.5 0.7 29 337-365 13-41 (143)
9 3oja_B Anopheles plasmodium-re 22.1 2.1E+02 0.0072 29.3 7.9 17 119-135 562-578 (597)
10 2w6b_A RHO guanine nucleotide 21.6 2E+02 0.0069 21.8 5.5 18 66-83 15-32 (56)
11 3he4_B Synzip5; heterodimeric 20.6 1.1E+02 0.0039 21.7 3.8 25 64-88 6-30 (46)
12 2i7u_A Four-alpha-helix bundle 20.5 1.5E+02 0.005 22.3 4.5 22 56-80 4-25 (62)
No 1
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=100.00 E-value=4.1e-40 Score=314.56 Aligned_cols=166 Identities=21% Similarity=0.388 Sum_probs=124.4
Q ss_pred hhHHH-HHHhhcCCccchhhccccccccccchhchHHhhhh-hcccccchhhhhhhccc---cccCcchHHHHHHHHHHh
Q 013445 251 SMWSK-LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRER-WETSDNPIVHKIQDMNE---TIFQETDAAASIKEIRRR 325 (443)
Q Consensus 251 s~W~~-~k~~~~~~pi~~~~~g~~~pv~~k~~e~~ed~r~~-~EeSDNPlV~ki~dI~d---~lf~eTe~a~vL~eIk~~ 325 (443)
.+|++ |++|+++||++++|+ |||++ |||||||+|+++++|+| |+|++|+++++|++|+++
T Consensus 7 ~~~~~~w~~fk~~~~~~~~~~---------------~~k~~~~~es~np~i~~~r~itd~v~~~f~~te~a~~l~~Ik~~ 71 (222)
T 3qk9_A 7 ESFGKKVEDFKEKTVVGRSIQ---------------SLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLM 71 (222)
T ss_dssp --------------------C---------------HHHHHHHHHCCCHHHHHHHHHCC---------CCHHHHTTCC--
T ss_pred hHHHHHHHHHhhcCHHHHHHH---------------HHHhhhcccccCHHHHHHHHHHHhcccccCCCHHHHHHHHHHHh
Confidence 38999 999999999999999 99999 99999999999999998 489999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHH-HHHHHHhCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCeecceeeecccccchhh------
Q 013445 326 DPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRVNEFVKFYHFLF------ 398 (443)
Q Consensus 326 DPsFd~~~Fl~gar~ai~p-ILeAf~kGD~e~LK~wcseavyn~faa~I~~R~~~Gl~~DskILdI~~i~~~~~------ 398 (443)
||+|++++|+++|+.+|.| ||+||++||+++||+||++++|+.|+++|++|+++|+++|++||+|.+++-+.+
T Consensus 72 DPsF~~~~Fl~~a~~ai~p~Il~Af~~GD~~~Lk~llse~~y~~f~~~i~~r~~~G~~~d~~il~I~~vdI~~a~~~~~~ 151 (222)
T 3qk9_A 72 DPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQ 151 (222)
T ss_dssp ---CCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHTTTEEECCEEEEEEEEEEEEEEECSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHHCCCEeeeeEeeecceEEEEEEEecCC
Confidence 9999999999999999888 999999999999999999999999999999999999999999999977765432
Q ss_pred --hhheehhhccCccceeeee-cccchhhhhhhccccccC
Q 013445 399 --VCFFFFFWLSSSDCHFISI-HLGTLGVCKSLLLHIQPS 435 (443)
Q Consensus 399 --~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 435 (443)
+. +++-+..+..||+++ ..|. |++|..++|+..
T Consensus 152 ~~p~--itV~f~aq~i~~~rd~k~Ge--VVeGd~d~i~~~ 187 (222)
T 3qk9_A 152 DIPV--LVVGCRAQEINLYRKKKTGE--IAAGDEANILMS 187 (222)
T ss_dssp CCEE--EEEEEEEEEECCEEESTTCC--CSSSCTTCCEEE
T ss_pred CceE--EEEEEEEEEEEEEEeCCCCc--cccCCCCCceEE
Confidence 33 334467778999999 8999 999999998753
No 2
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=99.95 E-value=1.8e-28 Score=228.63 Aligned_cols=146 Identities=18% Similarity=0.285 Sum_probs=122.1
Q ss_pred hhhhhcccccchh-------hhhhhccccccCcchHHHHHHHHHHhCCCCChhhHHHHHHHH-HHHHHHHHHhCCHHHHh
Q 013445 287 VRERWETSDNPIV-------HKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEA-IRPVLSAYMKGDVETLK 358 (443)
Q Consensus 287 ~r~~~EeSDNPlV-------~ki~dI~d~lf~eTe~a~vL~eIk~~DPsFd~~~Fl~gar~a-i~pILeAf~kGD~e~LK 358 (443)
.+++|||||||+| ++++|+++++|++|+.+.+|++|+++||+||+++|+++|+.+ |.+|++||.+||++.|+
T Consensus 3 ~~~~~~~s~n~~v~~~r~~~~~~~~~~~~~f~~s~~~~~l~~i~~~dp~Fd~~~Fl~~ak~~iy~~Iq~A~~~gD~~~Lr 82 (194)
T 2cw9_A 3 SGSSGDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILK 82 (194)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHH
T ss_pred ccccccCCCCceEEeehhhhhhhhhhhccccCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5678999999999 688899999999999999999999999999999999999999 67799999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHCCCeecceeeecccccchhh----hhheehhhccCccceeeeecccchhhhhhhcccccc
Q 013445 359 KYCSPEVIERCKAEHTAYQSHGIFFDNRVNEFVKFYHFLF----VCFFFFFWLSSSDCHFISIHLGTLGVCKSLLLHIQP 434 (443)
Q Consensus 359 ~wcseavyn~faa~I~~R~~~Gl~~DskILdI~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (443)
+||+|++|+.|.+.|++|.++|++.+++||+|.+++.+.+ -.-.+++-|..+..||+++..|. |++|..+.+++
T Consensus 83 ~~~t~~~~~~~~~~i~~r~~~g~~~~~~~v~i~~~el~~a~~~~~~~~itV~f~~~~i~~~rd~~G~--vveG~~~~~~~ 160 (194)
T 2cw9_A 83 DWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGE--VVEGDPDKVLR 160 (194)
T ss_dssp HHBCHHHHHHHHHHHHHHHHTTCEECCEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECEEECTTSC--EEEECTTCCEE
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCccccEEEEecccEEEEEEEeCCeeEEEEEEEEEEEEEEECCCCC--EecCCCCCceE
Confidence 9999999999999999999999999999999966655432 11234445678889999999999 99999887764
No 3
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=39.27 E-value=2.6e+02 Score=26.83 Aligned_cols=17 Identities=6% Similarity=0.274 Sum_probs=8.5
Q ss_pred HHHHhhHHHHHHHHHhh
Q 013445 86 ELKERTKQTTEQLYKQV 102 (443)
Q Consensus 86 ~lK~r~k~~a~~~~K~V 102 (443)
.||.|+..-++.+...+
T Consensus 70 elr~kL~p~~~el~~~l 86 (273)
T 3s84_A 70 QLRRQLTPYAQRMERVL 86 (273)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554444
No 4
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=31.75 E-value=2.3e+02 Score=27.19 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=29.4
Q ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 013445 85 EELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFR 136 (443)
Q Consensus 85 e~lK~r~k~~a~~~~K~V~~a~~esE~~~~k~s~~~k~ki~~a~e~vk~t~~ 136 (443)
|.|++++.--++.+.+.|..-+++--..-.-..+-++.+++.-.+.+++.+.
T Consensus 91 eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~~l~ 142 (273)
T 3s84_A 91 DSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLA 142 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666666666666554433211122222344567788888888888765
No 5
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=25.38 E-value=1.9e+02 Score=22.92 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=28.7
Q ss_pred hhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHH
Q 013445 60 AESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTE 96 (443)
Q Consensus 60 ~~KNkElqeniK~l~eea~kL~~s~e~lK~r~k~~a~ 96 (443)
+..||||+..+.+=++|.++|+.--..||+++-+-++
T Consensus 2 IkQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYte 38 (74)
T 2q6q_A 2 VQQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVD 38 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999998665678876655444
No 6
>1ev7_A Type IIE restriction endonuclease NAEI; APO-NAEI, topoisomerase, helix- turn-helix, CAP, hydrolase; 2.38A {Lechevalieria aerocolonigenes} SCOP: c.52.1.9 PDB: 1iaw_A
Probab=25.27 E-value=1e+02 Score=30.72 Aligned_cols=105 Identities=9% Similarity=-0.030 Sum_probs=79.3
Q ss_pred CcchHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHhCCHHHHhhhcCHHHHHHHHHHHHHHHHCC----Ceecce
Q 013445 311 QETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHG----IFFDNR 386 (443)
Q Consensus 311 ~eTe~a~vL~eIk~~DPsFd~~~Fl~gar~ai~pILeAf~kGD~e~LK~wcseavyn~faa~I~~R~~~G----l~~Dsk 386 (443)
+++++..+.+.|...|| |-+.|-.-++.-|-.|++..--|-..--.-.=.|-+|=.-.-.|.-|..-| ..+|..
T Consensus 11 ~D~el~~v~~~~~~~DP--dG~r~a~vlR~siD~vlDg~rTGR~~~~qL~KTEKth~GTlvEI~Lrref~~~~G~~lD~~ 88 (317)
T 1ev7_A 11 PDDDLERVRATLYSLDP--DGDRTAGVLRDTLDQLYDGQRTGRWNFDQLHKTEKTHMGTLVEINLHREFQFGDGFETDYE 88 (317)
T ss_dssp TTHHHHHHHHHHHHHSS--SSHHHHHHHHHHHHHHHTHHHHCCCSGGGSCHHHHHTHHHHHHHHHHHHHCCEECSSSSEE
T ss_pred CCHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhcccccCCcCHHHHhhhHhhhhhHHHHHHHHHhcCCCCCCccceE
Confidence 47889999999999999 467788888888999999999997655444445777766666677666554 447888
Q ss_pred eeec-ccccchhhhhheehhhccCccceeeeec
Q 013445 387 VNEF-VKFYHFLFVCFFFFFWLSSSDCHFISIH 418 (443)
Q Consensus 387 ILdI-~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (443)
|.++ +|+-+.+.. +..||-.+...-+|+-++
T Consensus 89 IaG~dVDcK~S~~~-~~WMIP~Ea~~~~cLlv~ 120 (317)
T 1ev7_A 89 IAGVQVDCKFSMSQ-GAWMLPPESIGHICLVIW 120 (317)
T ss_dssp ETTEEEEEEEESST-TCCCBCGGGTTSEEEEEE
T ss_pred ecCceeeeecccCC-cCcccChHHcCceEEEEE
Confidence 8887 777776665 667777777777776554
No 7
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=23.70 E-value=20 Score=30.03 Aligned_cols=30 Identities=3% Similarity=0.123 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHhhhcCHH
Q 013445 335 VSEVQEAIRPVLSAYMKGDVETLKKYCSPE 364 (443)
Q Consensus 335 l~gar~ai~pILeAf~kGD~e~LK~wcsea 364 (443)
+..+++.+.-.++|+..||.+.|-.+|+++
T Consensus 11 ~~~~~~~~~~f~~A~~~gD~~~l~~lla~D 40 (134)
T 3dmc_A 11 LKVAHQGFEFFTQGLATGEWQKFLDMLTED 40 (134)
T ss_dssp HHHHHHHHHHHHHHHHHSCCHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHcCCC
Confidence 345666677788899999999998887653
No 8
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=22.48 E-value=23 Score=30.51 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHhhhcCHHH
Q 013445 337 EVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (443)
Q Consensus 337 gar~ai~pILeAf~kGD~e~LK~wcseav 365 (443)
.+..+++-.++|+..||.+.+..+|++++
T Consensus 13 eI~~~~~~~~~Ai~~gD~~~~~~l~~~dv 41 (143)
T 2f86_B 13 DIVRVTQTLLDAISCKDFETYTRLCDTSM 41 (143)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHccCHHHHHHhcCCCE
Confidence 44555666889999999999998887754
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.15 E-value=2.1e+02 Score=29.26 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhhhhh
Q 013445 119 SMKEKISAATEEVKGTF 135 (443)
Q Consensus 119 ~~k~ki~~a~e~vk~t~ 135 (443)
.+++.+.....++++-.
T Consensus 562 ~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555556666554
No 10
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=21.56 E-value=2e+02 Score=21.83 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 013445 66 FKHSVKELKKKAEEIKGV 83 (443)
Q Consensus 66 lqeniK~l~eea~kL~~s 83 (443)
|++.+.+|+.+..+|+++
T Consensus 15 LkDqV~eL~qe~k~m~k~ 32 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKS 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555566665555544
No 11
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.61 E-value=1.1e+02 Score=21.73 Aligned_cols=25 Identities=40% Similarity=0.676 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHH
Q 013445 64 PEFKHSVKELKKKAEEIKGVKEELK 88 (443)
Q Consensus 64 kElqeniK~l~eea~kL~~s~e~lK 88 (443)
+||+.-|.+|.+.-.+|++-+|-||
T Consensus 6 kelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 5788888888888888888777665
No 12
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=20.47 E-value=1.5e+02 Score=22.33 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=12.6
Q ss_pred HHHHhhhChhhHHHHHHHHHHHHHH
Q 013445 56 IKGEAESNPEFKHSVKELKKKAEEI 80 (443)
Q Consensus 56 iK~E~~KNkElqeniK~l~eea~kL 80 (443)
+++|..| |-+.-|+|-+++.+|
T Consensus 4 lreeaak---lfeewkklaeeaakl 25 (62)
T 2i7u_A 4 LREEAAK---LFEEWKKLAEEAAKL 25 (62)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHH
Confidence 4555444 344566666776666
Done!