Your job contains 1 sequence.
>013446
MRWKRHSTVHFQDDVKQIPHSSIRRSSSVFDSLSNSLCVNYFVTESKKSKNNNNSLALRF
VLHQWKEFQFQLSLRLFSFIDQSKVKIFERVNQVQEGKKERKKETMAVVESASQDSAVSS
AGSIPASNGQDHPKQNGGTMVMPLDQGLYNQNNQRSNGGGDFKRDMRELQELFSKLNPMA
EEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQGKR
RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF
IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT
NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLG
SLPIRVSPSKTPVRPRAPRLPMH
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013446
(443 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2139242 - symbol:CID12 "CTC-interacting domain... 977 9.9e-114 2
TAIR|locus:2035629 - symbol:CID11 "CTC-interacting domain... 1066 8.1e-108 1
TAIR|locus:2082961 - symbol:CID10 "CTC-interacting domain... 904 3.2e-100 2
TAIR|locus:2091657 - symbol:CID9 "CTC-interacting domain ... 838 1.2e-89 2
TAIR|locus:2024842 - symbol:CID8 "CTC-interacting domain ... 825 1.7e-86 2
TAIR|locus:2184022 - symbol:CID13 "CTC-interacting domain... 775 5.5e-77 1
UNIPROTKB|F1NA16 - symbol:Gga.54187 "Uncharacterized prot... 143 4.3e-09 2
UNIPROTKB|J9P0H2 - symbol:SREK1 "Uncharacterized protein"... 143 7.9e-09 2
RGD|621696 - symbol:Srek1 "splicing regulatory glutamine/... 155 3.7e-08 1
UNIPROTKB|Q9JKL7 - symbol:Srek1 "Splicing regulatory glut... 155 3.7e-08 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 150 9.5e-08 1
MGI|MGI:2145245 - symbol:Srek1 "splicing regulatory gluta... 151 1.0e-07 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 146 2.7e-07 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 145 4.5e-07 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 146 5.3e-07 1
UNIPROTKB|Q8WXA9 - symbol:SREK1 "Splicing regulatory glut... 143 8.5e-07 1
UNIPROTKB|E2R749 - symbol:SREK1 "Uncharacterized protein"... 143 8.6e-07 1
ZFIN|ZDB-GENE-040801-132 - symbol:srek1 "splicing regulat... 142 1.1e-06 1
GENEDB_PFALCIPARUM|PFF0300w - symbol:PFF0300w "RNA-bindin... 120 1.6e-06 2
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 121 2.0e-06 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 137 2.5e-06 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 119 4.5e-06 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 135 4.7e-06 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 137 5.9e-06 1
POMBASE|SPBC1861.04c - symbol:SPBC1861.04c "RNA-binding p... 138 7.9e-06 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 121 8.8e-06 1
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 135 9.2e-06 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 103 1.1e-05 2
DICTYBASE|DDB_G0291386 - symbol:DDB_G0291386 "RNA recogni... 128 1.4e-05 2
WB|WBGene00020354 - symbol:T08B6.5 species:6239 "Caenorha... 118 2.5e-05 1
TAIR|locus:2142519 - symbol:AT5G10350 species:3702 "Arabi... 122 2.7e-05 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 122 2.8e-05 1
DICTYBASE|DDB_G0277371 - symbol:pabpn1 "polyadenylate-bin... 121 3.9e-05 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 104 4.8e-05 1
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 123 5.6e-05 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 123 5.6e-05 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 123 5.8e-05 1
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 126 5.9e-05 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 118 6.5e-05 1
DICTYBASE|DDB_G0275459 - symbol:DDB_G0275459 "RNA-binding... 109 6.6e-05 2
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 121 7.5e-05 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 124 7.6e-05 1
DICTYBASE|DDB_G0293252 - symbol:DDB_G0293252 "putative RN... 127 7.8e-05 1
TAIR|locus:2831834 - symbol:AT5G03580 species:3702 "Arabi... 102 7.9e-05 1
POMBASE|SPAC19G12.07c - symbol:rsd1 "RNA-binding protein ... 126 8.4e-05 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 122 8.7e-05 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 126 8.9e-05 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 122 9.0e-05 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 121 9.6e-05 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 121 9.6e-05 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 121 9.6e-05 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 121 9.6e-05 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 122 0.00011 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 122 0.00011 2
UNIPROTKB|Q9U1N0 - symbol:HRP65 "Hrp65 protein" species:7... 98 0.00012 2
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 119 0.00015 1
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 119 0.00015 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 125 0.00018 1
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 125 0.00018 1
TAIR|locus:2100696 - symbol:PHIP1 "phragmoplastin interac... 123 0.00018 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 119 0.00018 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 122 0.00019 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 123 0.00019 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 122 0.00019 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 122 0.00019 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 122 0.00021 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 122 0.00021 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 122 0.00021 1
DICTYBASE|DDB_G0289941 - symbol:DDB_G0289941 "Nucleolar p... 121 0.00021 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 122 0.00024 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 121 0.00024 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 122 0.00025 1
UNIPROTKB|Q9DDY9 - symbol:pabpn1-a "Polyadenylate-binding... 117 0.00025 1
UNIPROTKB|Q5QP23 - symbol:RBM39 "RNA-binding protein 39" ... 114 0.00030 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 122 0.00030 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 121 0.00034 1
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 119 0.00035 2
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 96 0.00035 1
GENEDB_PFALCIPARUM|MAL13P1.120 - symbol:MAL13P1.120 "spli... 122 0.00037 1
UNIPROTKB|Q8IE99 - symbol:MAL13P1.120 "Splicing factor, p... 122 0.00037 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 120 0.00040 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 120 0.00041 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 120 0.00041 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 120 0.00041 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 117 0.00041 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 117 0.00041 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 117 0.00041 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 120 0.00042 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 120 0.00042 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 119 0.00042 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 120 0.00044 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 119 0.00045 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 116 0.00053 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 119 0.00055 1
TAIR|locus:2086884 - symbol:NUC-L2 "nucleolin like 2" spe... 122 0.00063 2
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 116 0.00065 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 115 0.00066 1
UNIPROTKB|H0Y4X3 - symbol:RBM39 "RNA-binding protein 39" ... 114 0.00072 1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 110 0.00073 1
UNIPROTKB|Q5QP21 - symbol:RBM39 "RNA-binding protein 39" ... 109 0.00074 1
WARNING: Descriptions of 6 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2139242 [details] [associations]
symbol:CID12 "CTC-interacting domain 12" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 InterPro:IPR009818 Pfam:PF07145 EMBL:AL161517
EMBL:AL049523 EMBL:AF118222 EMBL:AF109721 EMBL:AY039599
EMBL:AY078011 EMBL:AY086286 IPI:IPI00524673 PIR:T04196
RefSeq:NP_192799.1 UniGene:At.24082 ProteinModelPortal:Q9S7N9
SMR:Q9S7N9 STRING:Q9S7N9 PRIDE:Q9S7N9 EnsemblPlants:AT4G10610.1
GeneID:826653 KEGG:ath:AT4G10610 TAIR:At4g10610 InParanoid:Q9S7N9
OMA:DMRELHE PhylomeDB:Q9S7N9 ProtClustDB:CLSN2682834
ArrayExpress:Q9S7N9 Genevestigator:Q9S7N9 Uniprot:Q9S7N9
Length = 336
Score = 977 (349.0 bits), Expect = 9.9e-114, Sum P(2) = 9.9e-114
Identities = 193/214 (90%), Positives = 200/214 (93%)
Query: 232 KKSFGQ-GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG 290
KKSFGQ GKRRMN RTSLAQREEIIRRTVYVSDIDQQVTEEQLA LF+G GQVVDCRICG
Sbjct: 124 KKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICG 183
Query: 291 DPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER 350
DPNSVLRFAFIEFTDE GAR ALNL+GTMLGFYPV+V+PSKTAIAPVNPTFLPRTEDER
Sbjct: 184 DPNSVLRFAFIEFTDEV-GARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDER 242
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
EMCARTIYCTNIDKK+TQ D+KLFFESVCGEVYRLRLLGDYHH TRI FVEFVMAESAIA
Sbjct: 243 EMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIA 302
Query: 411 ALNCSGVVLGSLPIRVSPSKTPVRPRA-PRLPMH 443
ALNCSGV+LGSLPIRVSPSKTPVR RA PR MH
Sbjct: 303 ALNCSGVLLGSLPIRVSPSKTPVRSRAIPRHQMH 336
Score = 165 (63.1 bits), Expect = 9.9e-114, Sum P(2) = 9.9e-114
Identities = 40/90 (44%), Positives = 52/90 (57%)
Query: 106 MAVVESASQDSAVSSAGSIPASNGQDHPKQNGGTMVMPLD--QGLYNQ---NNQRSNGGG 160
MAV+ES ++ V + G I S Q G G++++ + RS+GG
Sbjct: 1 MAVIESVGANTTVEAGGLISPSPPSSVTSQESGASSNNDHGGNGIHDEIGVHVARSDGGE 60
Query: 161 DFKRDMRELQELFSKLNPMAEEFVPPSLAK 190
FKRDMREL EL SKLNPMA+EF+PPSL K
Sbjct: 61 SFKRDMRELHELLSKLNPMAKEFIPPSLTK 90
>TAIR|locus:2035629 [details] [associations]
symbol:CID11 "CTC-interacting domain 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0046482 "para-aminobenzoic acid metabolic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
IPI:IPI00657306 RefSeq:NP_001031131.1 UniGene:At.27546
ProteinModelPortal:F4IEC7 SMR:F4IEC7 PRIDE:F4IEC7
EnsemblPlants:AT1G32790.2 GeneID:840173 KEGG:ath:AT1G32790
OMA:NARTSMA PhylomeDB:F4IEC7 Uniprot:F4IEC7
Length = 406
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 226/322 (70%), Positives = 249/322 (77%)
Query: 112 ASQDSAVSSAGSIPASNGQDHPKQNGGTMVMPLDQGLYNQNNQ---RSNG--GGD-FKRD 165
+S S+++S S +S+ Q+H + V+ DQGLY++ RS+G GG+ FKRD
Sbjct: 25 SSPPSSMTSQDSGVSSDDQNHHSRID--QVLRHDQGLYSKIGSHVARSDGVDGGESFKRD 82
Query: 166 MRELQELFSKLNPMAEEFVPPSLAKTXXXXXXXXXXXXXXXXXXSLIFXXXXXXXXXXXX 225
MRELQELFSKLNPMAEEFVPPSL K + F
Sbjct: 83 MRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGNGGYGNEN 142
Query: 226 XXXXXXKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD 285
KKSFGQGKRRMN+RTS+AQRE++IRRTVYVSD+DQQVTEEQLA LFV CGQVVD
Sbjct: 143 GGFRR-KKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVD 201
Query: 286 CRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
CRICGDPNSVLRFAFIEFTDE EGA ALNL+GTMLGFYPV+VLPSKTAIAPVNPTFLPR
Sbjct: 202 CRICGDPNSVLRFAFIEFTDE-EGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPR 260
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMA 405
TEDEREMCARTIYCTNIDKKVTQ+DVK+FFES CGEVYRLRLLGDY HSTRIAFVEFVMA
Sbjct: 261 TEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMA 320
Query: 406 ESAIAALNCSGVVLGSLPIRVS 427
ESAIAALNCSGVVLGSLPIR S
Sbjct: 321 ESAIAALNCSGVVLGSLPIRSS 342
Score = 179 (68.1 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 40/95 (42%), Positives = 59/95 (62%)
Query: 349 ERE-MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAES 407
+RE + RT+Y +++D++VT+ + F S CG+V R+ GD + R AF+EF E
Sbjct: 166 QREDVIRRTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEG 224
Query: 408 AIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR-LP 441
A+ ALN SG +LG P++V PSKT + P P LP
Sbjct: 225 AMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLP 259
Score = 39 (18.8 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 106 MAVVESASQDSAVSSAGSIPASNGQDHPKQNGGTMVMPLDQGLYNQNNQRSNGGGDFKRD 165
MAVVE+ + +A + G + Q P +M D G+ + ++Q + D +
Sbjct: 1 MAVVETGAAATAADAGGVVI----QPPPSSPPSSMTSQ-DSGV-SSDDQNHHSRID--QV 52
Query: 166 MRELQELFSKL 176
+R Q L+SK+
Sbjct: 53 LRHDQGLYSKI 63
>TAIR|locus:2082961 [details] [associations]
symbol:CID10 "CTC-interacting domain 10" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 EMBL:AC012329
EMBL:AL132956 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818
Pfam:PF07145 EMBL:AK317338 IPI:IPI00545615 PIR:T45844
RefSeq:NP_001030833.1 RefSeq:NP_190508.1 UniGene:At.738
ProteinModelPortal:Q9SG10 SMR:Q9SG10 PRIDE:Q9SG10
EnsemblPlants:AT3G49390.1 EnsemblPlants:AT3G49390.2 GeneID:824101
KEGG:ath:AT3G49390 TAIR:At3g49390 InParanoid:Q9SG10 OMA:ETDDRIN
PhylomeDB:Q9SG10 ProtClustDB:CLSN2684239 Genevestigator:Q9SG10
Uniprot:Q9SG10
Length = 353
Score = 904 (323.3 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 168/208 (80%), Positives = 194/208 (93%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD 291
++SFGQGKRRMN RTSLAQ++++IRRTVYVSDIDQQVTEE LA +F+ CGQVVDCR+CGD
Sbjct: 144 RRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGD 203
Query: 292 PNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDERE 351
PNSVLRFAFIEFT+E EGARAAL+++GT+LGFYP++VLPSKTAIAPVNPTFLPR+EDERE
Sbjct: 204 PNSVLRFAFIEFTNE-EGARAALSMSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDERE 262
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
MC RT+YCTNIDK++TQ D+K FFE +CGEV+RLRL GDYHH TRIAFVEF MAESAIAA
Sbjct: 263 MCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAA 321
Query: 412 LNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
L+CSG+VLG+LPIRVSPSKTPVRP PR
Sbjct: 322 LHCSGIVLGALPIRVSPSKTPVRPHFPR 349
Score = 110 (43.8 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 146 QGLYNQNNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKT 191
Q + N NG D ++++L + FSKLNPMA+EFVPPSLA++
Sbjct: 67 QKVQTLNGFSGNGERDNNGEIKDLADAFSKLNPMAQEFVPPSLARS 112
>TAIR|locus:2091657 [details] [associations]
symbol:CID9 "CTC-interacting domain 9" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB028617 HSSP:P11940 HOGENOM:HOG000006309 IPI:IPI00526270
RefSeq:NP_188063.1 UniGene:At.53311 ProteinModelPortal:Q9LRR6
SMR:Q9LRR6 EnsemblPlants:AT3G14450.1 GeneID:820668
KEGG:ath:AT3G14450 TAIR:At3g14450 eggNOG:NOG243629
InParanoid:Q9LRR6 OMA:PRVNRVG PhylomeDB:Q9LRR6
ProtClustDB:CLSN2915572 Genevestigator:Q9LRR6 Uniprot:Q9LRR6
Length = 327
Score = 838 (300.0 bits), Expect = 1.2e-89, Sum P(2) = 1.2e-89
Identities = 161/210 (76%), Positives = 182/210 (86%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD 291
++++ QG+RR+ R S AQRE+ IRRTVYVSDIDQ VTEE LA LF CGQVVDCRICGD
Sbjct: 116 RRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGD 175
Query: 292 PNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDERE 351
P+SVLRFAF+EF D+ +GA AL+L GTMLGFYPVRVLPSKTAI PVNPTFLPR+EDERE
Sbjct: 176 PHSVLRFAFVEFADD-QGAHEALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDERE 234
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
MC RTIYCTNIDKKV+QADV+ FFES CGEV RLRLLGD HSTRIAFVEF +A+SA++A
Sbjct: 235 MCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALSA 294
Query: 412 LNCSGVVLGSLPIRVSPSKTPVRPRAPRLP 441
LNCSG+V+GS PIRVSPSKTPVRPR R P
Sbjct: 295 LNCSGMVVGSQPIRVSPSKTPVRPRITRPP 324
Score = 76 (31.8 bits), Expect = 1.2e-89, Sum P(2) = 1.2e-89
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 144 LDQGLYNQNNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVP 185
+D+G+ + S + + DM +L +F KLNP+A+EF P
Sbjct: 28 IDEGIEKSSITDSKTETESRLDMHKLVAMFKKLNPLAKEFFP 69
>TAIR|locus:2024842 [details] [associations]
symbol:CID8 "CTC-interacting domain 8" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AC024260 HSSP:P11940 EMBL:BT014885 IPI:IPI00524059 PIR:F96576
RefSeq:NP_175769.1 UniGene:At.37370 ProteinModelPortal:Q9C8M0
SMR:Q9C8M0 STRING:Q9C8M0 EnsemblPlants:AT1G53650.1 GeneID:841802
KEGG:ath:AT1G53650 TAIR:At1g53650 HOGENOM:HOG000006309
InParanoid:Q9C8M0 OMA:ITEMATD PhylomeDB:Q9C8M0
ProtClustDB:CLSN2682126 Genevestigator:Q9C8M0 Uniprot:Q9C8M0
Length = 314
Score = 825 (295.5 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 159/211 (75%), Positives = 180/211 (85%)
Query: 232 KKSFGQGKR-RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG 290
+ ++ QG+R R+ R S AQRE+ IRRTVYVSDIDQ VTEE LA LF CGQVVDCRICG
Sbjct: 102 RNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICG 161
Query: 291 DPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER 350
DPNSVLRFAF+EF+D+ +GAR+AL+L GTM+G+YPVRVLPSKTAI PVNPTFLPR+EDER
Sbjct: 162 DPNSVLRFAFVEFSDD-QGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDER 220
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
EMC+RTIYCTN+DK T+ DV FF+S CGEV RLRLLGD HSTRIAFVEF MAESA+A
Sbjct: 221 EMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVA 280
Query: 411 ALNCSGVVLGSLPIRVSPSKTPVRPRAPRLP 441
ALNCSG+VLGS PIRVSPSKTPVR R R P
Sbjct: 281 ALNCSGIVLGSQPIRVSPSKTPVRSRITRSP 311
Score = 59 (25.8 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 166 MRELQELFSKLNPMAEEFVP 185
M++L +F KLNP A+EF P
Sbjct: 50 MKKLVAMFKKLNPEAKEFFP 69
>TAIR|locus:2184022 [details] [associations]
symbol:CID13 "CTC-interacting domain 13" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB025641 HOGENOM:HOG000006309 IPI:IPI00536712
RefSeq:NP_197832.1 UniGene:At.54975 ProteinModelPortal:Q9FGE6
SMR:Q9FGE6 EnsemblPlants:AT5G24440.1 GeneID:832515
KEGG:ath:AT5G24440 TAIR:At5g24440 eggNOG:NOG303272
InParanoid:Q9FGE6 OMA:FKLAESA PhylomeDB:Q9FGE6
ProtClustDB:CLSN2916288 Genevestigator:Q9FGE6 Uniprot:Q9FGE6
Length = 320
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 156/266 (58%), Positives = 196/266 (73%)
Query: 169 LQELFSKLNPMAEEFVPPSLAKTXXXXXXXXXXXXXXXXXXSLIFXXXXXXXXXXXXXXX 228
L+ S LNPMA+EFVP LA+T IF
Sbjct: 59 LKSEISHLNPMAKEFVPSFLAQTHHSEFWGNRFWFTNHFPKQTIFLIGQFATM------- 111
Query: 229 XXXKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRI 288
+++FG+G+ + +T+L Q E++I+RTVYVSDID QVTEEQLA+LF+ CGQVVDCR+
Sbjct: 112 ---RRNFGKGRPWITKKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCRM 168
Query: 289 CGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTED 348
CGD S+LRFAFIEFTD AEGAR+AL +GTM G +P+RV SKTAIAPVNP+FLP+++D
Sbjct: 169 CGDYKSILRFAFIEFTD-AEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKD 227
Query: 349 EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA 408
E E C +T+YCTNIDK+VT+ +++ FF++VCGEV+ LRLLGD++H TRIAFVEF +AESA
Sbjct: 228 ELEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESA 287
Query: 409 IAALNCSGVVLGSLPIRVSPSKTPVR 434
I+ALNCSGVVLG LPIRVSPSKTPVR
Sbjct: 288 ISALNCSGVVLGELPIRVSPSKTPVR 313
Score = 182 (69.1 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 46/102 (45%), Positives = 59/102 (57%)
Query: 341 TFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFV 400
T L + ED M RT+Y ++ID +VT+ + F S CG+V R+ GDY R AF+
Sbjct: 126 TNLVQNED---MIKRTVYVSDIDNQVTEEQLASLFLS-CGQVVDCRMCGDYKSILRFAFI 181
Query: 401 EFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR-LP 441
EF AE A +AL SG + GS PIRV SKT + P P LP
Sbjct: 182 EFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLP 223
>UNIPROTKB|F1NA16 [details] [associations]
symbol:Gga.54187 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
OMA:EKEQDKD EMBL:AADN02045988 EMBL:AADN02045989 EMBL:AADN02045990
EMBL:AADN02045991 EMBL:AADN02045992 EMBL:AADN02045993
IPI:IPI00583646 Ensembl:ENSGALT00000023839 Uniprot:F1NA16
Length = 475
Score = 143 (55.4 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 41/112 (36%), Positives = 59/112 (52%)
Query: 318 GTMLGFYPVRVL-PSKTAIAPV-NPTFLPRTEDER-EMCARTIYCTNIDKKVTQADVKL- 373
GT LG P L P+ TA+ + P + + + + RT+Y N++ + T AD L
Sbjct: 129 GT-LGAIPAAALDPNITALGEIPQPPIMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLE 187
Query: 374 FFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 425
FF+ V GEV +R+ GD TR AFVEF S AL +GV+ G P++
Sbjct: 188 FFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 238
Score = 132 (51.5 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 37/104 (35%), Positives = 50/104 (48%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ RA
Sbjct: 166 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRA- 224
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTI 357
L G M G P++ + F+ TE CAR +
Sbjct: 225 LAFNGVMFGDRPLKFVNHSIK----QSDFVQLTEVVHSTCARLL 264
Score = 63 (27.2 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA----FIEFTDEAEGARAAL 314
+ V+++ VT EQ+ LF G + + R+ N+ L F+ +I+F EA A
Sbjct: 7 IQVTNLSLAVTSEQMRTLFGFLGDIEELRLYPPDNAPLAFSSKVCYIKFR-EASSVGVAQ 65
Query: 315 NLAGTM 320
+L T+
Sbjct: 66 HLTNTV 71
Score = 37 (18.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 105 TMAVVESASQDSAVSSAGSIP 125
T+ + +A+ D +++ G IP
Sbjct: 130 TLGAIPAAALDPNITALGEIP 150
>UNIPROTKB|J9P0H2 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104035 KO:K13165 CTD:140890 OMA:EKEQDKD
EMBL:AAEX03001478 RefSeq:XP_544361.3 Ensembl:ENSCAFT00000044884
GeneID:487233 KEGG:cfa:487233 Uniprot:J9P0H2
Length = 626
Score = 143 (55.4 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 41/127 (32%), Positives = 65/127 (51%)
Query: 314 LNLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRTEDER-EMCARTIYCTNIDKKVTQAD 370
L ++ + LG P L P+ + + P + + + + RT+Y N++ + T AD
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 197
Query: 371 VKL-FFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429
L FF+ V GEV +R+ GD TR AFVEF S AL +GV+ G P++++ S
Sbjct: 198 QLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS 256
Query: 430 KTP-VRP 435
V+P
Sbjct: 257 NNAIVKP 263
Score = 138 (53.6 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 36/92 (39%), Positives = 48/92 (52%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ RA
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRA- 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
L G M G P+++ S AI P P+
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQ 269
Score = 64 (27.6 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA----FIEFTDEAEGARAAL 314
+ V+++ VT EQ+ LF G++ + R+ N+ L F+ +++F D + A
Sbjct: 21 IQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKFRDPSS-VGVAQ 79
Query: 315 NLAGTM 320
+L T+
Sbjct: 80 HLTNTV 85
>RGD|621696 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:621696 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 KO:K13165 CTD:140890
HOVERGEN:HBG079174 OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759
RefSeq:NP_064477.1 UniGene:Rn.161755 ProteinModelPortal:Q9JKL7
STRING:Q9JKL7 PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763
UCSC:RGD:621696 eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 155 (59.6 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 44/131 (33%), Positives = 70/131 (53%)
Query: 310 ARAALNLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRTEDER-EMCARTIYCTNIDKKV 366
A ++L ++ + LG P L P+ TA+ + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 367 TQADVKL-FFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 425
T AD L FF+ V GEV +R+ GD TR AFVEF S AL +GV+ G P++
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 139
Query: 426 VSPSKTP-VRP 435
++ S V+P
Sbjct: 140 INHSNNAIVKP 150
Score = 138 (53.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 36/92 (39%), Positives = 48/92 (52%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ RA
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRA- 125
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
L G M G P+++ S AI P P+
Sbjct: 126 LAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQ 156
>UNIPROTKB|Q9JKL7 [details] [associations]
symbol:Srek1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:621696 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003676 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759 RefSeq:NP_064477.1
UniGene:Rn.161755 ProteinModelPortal:Q9JKL7 STRING:Q9JKL7
PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763 UCSC:RGD:621696
eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 155 (59.6 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 44/131 (33%), Positives = 70/131 (53%)
Query: 310 ARAALNLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRTEDER-EMCARTIYCTNIDKKV 366
A ++L ++ + LG P L P+ TA+ + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 367 TQADVKL-FFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 425
T AD L FF+ V GEV +R+ GD TR AFVEF S AL +GV+ G P++
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 139
Query: 426 VSPSKTP-VRP 435
++ S V+P
Sbjct: 140 INHSNNAIVKP 150
Score = 138 (53.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 36/92 (39%), Positives = 48/92 (52%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ RA
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRA- 125
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
L G M G P+++ S AI P P+
Sbjct: 126 LAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQ 156
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 150 (57.9 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 59/208 (28%), Positives = 98/208 (47%)
Query: 241 RMN--SRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDP 292
RMN S + +R++ T++V D+ VT+ L F V +VV RI G
Sbjct: 158 RMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRS 217
Query: 293 NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS---KTAIAPVNPTFL-PR-TE 347
+ F++F DE+E RA + G + P+R+ P+ K P T+ P+ T+
Sbjct: 218 KG---YGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQ 274
Query: 348 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VM 404
E + TI+ +D V + ++ F S GE+ ++++ R FV+F
Sbjct: 275 GESDPNNTTIFVGGLDPTVAEEHLRQVF-SPYGELVHVKIVA----GKRCGFVQFGTRAS 329
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTP 432
AE A+++LN G LG IR+S ++P
Sbjct: 330 AEQALSSLN--GTQLGGQSIRLSWGRSP 355
>MGI|MGI:2145245 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2145245 GO:GO:0005739
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OMA:EKEQDKD OrthoDB:EOG4K3KWS EMBL:AK033354 EMBL:AK037115
EMBL:AK039311 EMBL:AK044086 EMBL:AK052265 EMBL:BC070460
IPI:IPI00227738 IPI:IPI00379480 RefSeq:NP_766180.1
UniGene:Mm.458176 ProteinModelPortal:Q8BZX4 SMR:Q8BZX4
STRING:Q8BZX4 PhosphoSite:Q8BZX4 PaxDb:Q8BZX4 PRIDE:Q8BZX4
Ensembl:ENSMUST00000074616 GeneID:218543 KEGG:mmu:218543
UCSC:uc007rsh.1 InParanoid:Q8BZX4 NextBio:376337 Bgee:Q8BZX4
CleanEx:MM_SFRS12 Genevestigator:Q8BZX4
GermOnline:ENSMUSG00000032621 Uniprot:Q8BZX4
Length = 494
Score = 151 (58.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 43/131 (32%), Positives = 69/131 (52%)
Query: 310 ARAALNLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRTEDER-EMCARTIYCTNIDKKV 366
A ++L ++ + LG P L P+ T + + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 367 TQADVKL-FFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 425
T AD L FF+ V GEV +R+ GD TR AFVEF S AL +GV+ G P++
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 139
Query: 426 VSPSKTP-VRP 435
++ S V+P
Sbjct: 140 INHSNNAIVKP 150
Score = 138 (53.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 36/92 (39%), Positives = 48/92 (52%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ RA
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRA- 125
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
L G M G P+++ S AI P P+
Sbjct: 126 LAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQ 156
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 146 (56.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 44/174 (25%), Positives = 81/174 (46%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL 314
R V+V ++D+ + +QL +F G+V+ C++ D + V + + F++F + A
Sbjct: 30 RGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACN 89
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
GT++ + V P F+ R + ++ +Y N+ + T AD+K
Sbjct: 90 FHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLKRL 138
Query: 375 FESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
F GE+ ++ D S R FV F AE+A+ A+ +GVV+ + V
Sbjct: 139 FGEF-GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHV 191
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 145 (56.1 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 58/189 (30%), Positives = 91/189 (48%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T+YV ++D V+E+ L ALF G V C+I +P + +AFIE+++ + A AL
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNY-QAATTALTA 64
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
L + + + A +P N P+T+ I+ ++ ++ ++ F
Sbjct: 65 MNKRL--FLEKEIKVNWATSPGNQ---PKTDISSH---HHIFVGDLSPEIETETLREAFA 116
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRV--SPS 429
GE+ R++ D H S AFV FV AE+AI A+N G +GS IR S
Sbjct: 117 PF-GEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRTNWSTR 173
Query: 430 KTPVRPRAP 438
K P PR P
Sbjct: 174 KLPP-PREP 181
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 146 (56.5 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 49/177 (27%), Positives = 83/177 (46%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
+Y+ ++D V+E+ L F G++V I D N + R +AF+ F + + RAA +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 318 GTMLG---FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--IYCTNIDKKVTQADVK 372
GT G Y R + F + E E++M A+ IY N++ VT+ +++
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHE-EQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 373 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVLGSLPIRVS 427
F S CG + +L+ D ++ FV F E AI A+ G + P+ V+
Sbjct: 322 KHF-SQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVA 377
>UNIPROTKB|Q8WXA9 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 eggNOG:NOG277302 KO:K13165
EMBL:AF459094 EMBL:BC047322 EMBL:BC067770 EMBL:BC112343
IPI:IPI00103497 IPI:IPI00375462 RefSeq:NP_001070667.1
RefSeq:NP_001257421.1 RefSeq:NP_631907.1 UniGene:Hs.49367
UniGene:Hs.519347 ProteinModelPortal:Q8WXA9 SMR:Q8WXA9
IntAct:Q8WXA9 STRING:Q8WXA9 PhosphoSite:Q8WXA9 DMDM:37537968
PaxDb:Q8WXA9 PeptideAtlas:Q8WXA9 PRIDE:Q8WXA9
Ensembl:ENST00000334121 Ensembl:ENST00000380918 GeneID:140890
KEGG:hsa:140890 UCSC:uc003jun.3 UCSC:uc003juo.3 CTD:140890
GeneCards:GC05P065435 HGNC:HGNC:17882 HPA:HPA037674 MIM:609268
neXtProt:NX_Q8WXA9 PharmGKB:PA38255 HOVERGEN:HBG079174
InParanoid:Q8WXA9 OMA:EKEQDKD OrthoDB:EOG4K3KWS ChiTaRS:SREK1
GenomeRNAi:140890 NextBio:84548 ArrayExpress:Q8WXA9 Bgee:Q8WXA9
CleanEx:HS_SFRS12 Genevestigator:Q8WXA9 GermOnline:ENSG00000153914
Uniprot:Q8WXA9
Length = 508
Score = 143 (55.4 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 41/127 (32%), Positives = 65/127 (51%)
Query: 314 LNLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRTEDER-EMCARTIYCTNIDKKVTQAD 370
L ++ + LG P L P+ + + P + + + + RT+Y N++ + T AD
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 81
Query: 371 VKL-FFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429
L FF+ V GEV +R+ GD TR AFVEF S AL +GV+ G P++++ S
Sbjct: 82 QLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS 140
Query: 430 KTP-VRP 435
V+P
Sbjct: 141 NNAIVKP 147
Score = 138 (53.6 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 36/92 (39%), Positives = 48/92 (52%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ RA
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRA- 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
L G M G P+++ S AI P P+
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQ 153
>UNIPROTKB|E2R749 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
EMBL:AAEX03001478 Ensembl:ENSCAFT00000012107 Uniprot:E2R749
Length = 510
Score = 143 (55.4 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 41/127 (32%), Positives = 65/127 (51%)
Query: 314 LNLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRTEDER-EMCARTIYCTNIDKKVTQAD 370
L ++ + LG P L P+ + + P + + + + RT+Y N++ + T AD
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 81
Query: 371 VKL-FFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429
L FF+ V GEV +R+ GD TR AFVEF S AL +GV+ G P++++ S
Sbjct: 82 QLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS 140
Query: 430 KTP-VRP 435
V+P
Sbjct: 141 NNAIVKP 147
Score = 138 (53.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 36/92 (39%), Positives = 48/92 (52%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ RA
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRA- 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
L G M G P+++ S AI P P+
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQ 153
>ZFIN|ZDB-GENE-040801-132 [details] [associations]
symbol:srek1 "splicing regulatory
glutamine/lysine-rich protein 1" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040801-132 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 OrthoDB:EOG4K3KWS HOGENOM:HOG000121772
EMBL:BX950207 EMBL:CU207241 EMBL:CU467961 IPI:IPI00497438
UniGene:Dr.81675 Ensembl:ENSDART00000134937 HOVERGEN:HBG097523
InParanoid:A2BIN4 Uniprot:A2BIN4
Length = 515
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 37/92 (40%), Positives = 48/92 (52%)
Query: 255 IRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G V R+ GD RFAF+EF D+ ARA
Sbjct: 169 IRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVARA- 227
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
L G M G P+++ S AI P P+
Sbjct: 228 LTYNGVMFGDRPLKINHSNNAIVKP-PELTPQ 258
Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 40/112 (35%), Positives = 59/112 (52%)
Query: 326 VRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL-FFESVCGEVYR 384
V L + +A P+ P DE RT+Y N++ + T AD L FF+ V G+V
Sbjct: 145 VATLSAVSAQPPLMGNVDPSKVDE---IRRTVYVGNLNSQSTTADQLLKFFKQV-GDVKF 200
Query: 385 LRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP-VRP 435
+R+ GD TR AFVEF +S AL +GV+ G P++++ S V+P
Sbjct: 201 VRMAGDETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKINHSNNAIVKP 252
>GENEDB_PFALCIPARUM|PFF0300w [details] [associations]
symbol:PFF0300w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL844505 RefSeq:XP_966051.1
ProteinModelPortal:C6KSQ9 EnsemblProtists:PFF0300w:mRNA
GeneID:3885781 KEGG:pfa:PFF0300w EuPathDB:PlasmoDB:PF3D7_0606100
HOGENOM:HOG000281446 ProtClustDB:CLSZ2497377 Uniprot:C6KSQ9
Length = 582
Score = 120 (47.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 28/93 (30%), Positives = 52/93 (55%)
Query: 237 QGKRRMNSRTSLAQRE---EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN 293
Q KR ++ + SL ++ ++ + VY+ +I ++ EE + A F G ++ +
Sbjct: 131 QKKRLVDFQNSLNEKNNKFDVFSKIVYMENIPEKYGEEDIKAFFQNVGNTTSYKLQYNEQ 190
Query: 294 SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
+ AF+EF +E E A+AALNL+GT +G + +
Sbjct: 191 KKVHTAFVEFKNE-EHAKAALNLSGTKVGLHEI 222
Score = 104 (41.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
++ ++ +Y NI +K + D+K FF++V G +L + AFVEF E A A
Sbjct: 150 DVFSKIVYMENIPEKYGEEDIKAFFQNV-GNTTSYKLQYNEQKKVHTAFVEFKNEEHAKA 208
Query: 411 ALNCSGVVLG 420
ALN SG +G
Sbjct: 209 ALNLSGTKVG 218
Score = 83 (34.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 26/98 (26%), Positives = 42/98 (42%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAAL 314
I VYV ++ +TEE + F C +++ P ++ IEF +EG A
Sbjct: 7 IANVVYVKNLSSDITEENIREKFGSCDEIISITFKNFPGLNQKYCQIEFKT-SEGITNAS 65
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREM 352
L G L P+ V + I N + L TE ++ +
Sbjct: 66 RLNGESLLNVPMVVSVIEPIINNTNLSELSTTECDKNV 103
Score = 39 (18.8 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGE 381
E+C R Y DK + + + + + GE
Sbjct: 221 EICIRDAYSLINDKDILKNNFSFYSNNTTGE 251
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 121 (47.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 34 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 90
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 91 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 121
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 137 (53.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 50/187 (26%), Positives = 85/187 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAAL 314
T++V D+ +VT+ L+ F G V ++ D + + F+ F DE E RA
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 315 NLAGTMLGFYPVRVLPS--KTAIAPVNPTFLPRTED----EREMCARTIYCTNIDKKVTQ 368
+ G P+R+ P+ K A+ P+ P T+ + + TI+ +D VT
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNAL-PMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTD 273
Query: 369 ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALNCSGVVLGSLPIR 425
++K F GE+ +++ R FV++ AE A++ LN G LG IR
Sbjct: 274 DELKSIFGQF-GELLHVKI----PPGKRCGFVQYANKASAEHALSVLN--GTQLGGQSIR 326
Query: 426 VSPSKTP 432
+S ++P
Sbjct: 327 LSWGRSP 333
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 119 (46.9 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFIEFTD 305
+E I ++VYV ++D VT E+L + F CG V + C + G P FA+IEF++
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAYIEFSE 105
Query: 306 EAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
+ A L L G+ML P++V P +T +
Sbjct: 106 PSLVPNALL-LNGSMLHERPLKVTPKRTNV 134
Score = 111 (44.1 bits), Expect = 0.00013, P = 0.00013
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 348 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMA 405
D+ + A+++Y N+D VT +++ F S CG V R+ +L D H A++EF
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFAS-CGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKTPV 433
AL +G +L P++V+P +T V
Sbjct: 107 SLVPNALLLNGSMLHERPLKVTPKRTNV 134
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 135 (52.6 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 50/186 (26%), Positives = 82/186 (44%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAAL 314
TV+V D+ VT+ L F V ++ D + + F+ F DE+E RA
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 315 NLAGTMLGFYPVRVLPS--KTAIAPVNPTFLPRTED---EREMCARTIYCTNIDKKVTQA 369
+ G P+R P+ K + + P T+ E + TI+ +D+ VT+
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLT-MQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTED 292
Query: 370 DVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALNCSGVVLGSLPIRV 426
D+K F GE+ +++ R FV++ AE A++ LN G LG IR+
Sbjct: 293 DLKSVFGQF-GELVHVKIPA----GKRCGFVQYANRACAEQALSVLN--GTQLGGQSIRL 345
Query: 427 SPSKTP 432
S ++P
Sbjct: 346 SWGRSP 351
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 137 (53.3 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 51/177 (28%), Positives = 79/177 (44%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEF--TDEAEGARAA 313
++YV D+D VT+ QL F QVV R+C D N+ L + ++ + TD+AE A
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
LN + L +R+ T+ R R ++ N+DK V +
Sbjct: 107 LNYS--YLNGKMIRI------------TYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHE 152
Query: 374 FFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
F S CG + ++ D+ +R FV+F +SA A+ +G VL I V P
Sbjct: 153 AF-SGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGP 208
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 138 (53.6 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 53/174 (30%), Positives = 80/174 (45%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEAEGARAALNLA 317
+YV++ E + LF G VVD R N+ RF +++ E A AL L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDE-AHNALQLH 726
Query: 318 GTMLGF-YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+L YP++V S P+ T PR+ E R +Y TNID KV + DV+ FF
Sbjct: 727 KKLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVETFFR 778
Query: 377 SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
G+V +R+ ++ +V + A AL+ +G LG+ + V SK
Sbjct: 779 DY-GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSK 831
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 121 (47.7 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 34 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 90
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 91 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 121
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 135 (52.6 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 54/220 (24%), Positives = 105/220 (47%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDCRIC 289
K++ ++++ ++ + QR++ + VYV I ++ E+ + F G + +
Sbjct: 103 KQTLAHQQQQLATQRTQVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMS 162
Query: 290 GDPNSVLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT 346
DP + FAF+E+ + EGA+ AL + G ++G ++V + + P +
Sbjct: 163 WDPITQKHKGFAFVEY-EIPEGAQLALEQMNGALMGGRNIKV--GRPSNMPQAQQVIDEV 219
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL-GDYHHSTR-IAFVEFVM 404
++E + R IY +I +++ D+K FE+ G + +L G H+ + F+E+
Sbjct: 220 QEEAKSFNR-IYVASIHPDLSEEDIKSVFEAF-GPILYCKLAQGTSLHTHKGYGFIEYAN 277
Query: 405 AES---AIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLP 441
++ AIA++N LG +RV S TP P A P
Sbjct: 278 KQAMDEAIASMNLFD--LGGQLLRVGRSITP--PNALACP 313
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 103 (41.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 36/110 (32%), Positives = 54/110 (49%)
Query: 324 YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVY 383
YPV V PS A APV P E ++ TI N+D+ VT+ ++K F + GEV
Sbjct: 211 YPVTV-PSAVA-APVQAYVAP---PESDVTCTTISVANLDQNVTEEELKKAFSQL-GEVI 264
Query: 384 RLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 432
+++ + +V+F SA A+ G V+G +R+S SK P
Sbjct: 265 YVKIPATKGYG----YVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310
Score = 72 (30.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 22/75 (29%), Positives = 33/75 (44%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCR-----ICGDPNSVLRFAFIEFTDE 306
EE+ RT+++ D+ V E L + F G++V + I G P + FIEF
Sbjct: 21 EEV--RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEG---YGFIEFISH 75
Query: 307 AEGARAALNLAGTML 321
A R GT +
Sbjct: 76 AAAERTLQTYNGTQM 90
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 128 (50.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 49/210 (23%), Positives = 96/210 (45%)
Query: 237 QGKRRMNSRTSLAQREEIIRR-TVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDP-N 293
Q +++M + Q+++ ++Y+ D+ VT++QL F G V R+ D
Sbjct: 92 QQQQQMQQQQQQQQQQQSDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSAT 151
Query: 294 SVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRVL-PSKTAIAPVNPTFLPRTEDERE 351
+ R + F++F + E +A +++ G + P++V P+ + T T +
Sbjct: 152 GISRGYGFVKFASDVEKDKALIDMNGFYINNKPIKVNNPTHKRLNSQTSTIPDLTSTDPN 211
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
A IY + +D + + ++ F + GE+ +++L + AFV FV ESA AA
Sbjct: 212 NTA--IYVSQLDHYIDEGVLQTIFGAY-GEISYIKMLTNKFS----AFVNFVNRESAEAA 264
Query: 412 LNCSGVVLGSLPIRVSPSKTPVRPRAPRLP 441
+ +G+ ++V K P P+ P
Sbjct: 265 FGLNNFPVGNTRLKVQWGKNVAPP--PKSP 292
Score = 45 (20.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 16/88 (18%), Positives = 35/88 (39%)
Query: 90 RVNQVQEGKKERKKETMAVVESASQDSAVSSAGSIPASNGQDHPKQNGGTMVMPLDQ--- 146
R+NQ Q+ +++++++ + G + + Q H + L Q
Sbjct: 6 RINQFQQQQQQQQQQQQQTQYNTQYYGQYQQQGHMMGGHMQQHMQHPNQFQQHHLHQQQM 65
Query: 147 ---GLYNQNNQRSNGGGDFKRDMRELQE 171
G Q Q+ G F + M+++Q+
Sbjct: 66 SMMGHMPQQQQQQQYGRGFPQQMQQMQQ 93
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 118 (46.6 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY 391
K A++ P E++ + AR++Y N+D K T ++++ F +VCG+V R+ + D
Sbjct: 23 KQALSASKKYMAPTAEEQEKTDARSVYVGNVDWKSTVSEIEEHF-AVCGKVARVTIPKDK 81
Query: 392 H--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
+ AFVEF ES AL SG + + I V+ +T
Sbjct: 82 FTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRT 123
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 122 (48.0 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMA 405
E + E+ AR++Y N+D T +V+L F++ CG V R+ +L D + A+VEFV
Sbjct: 81 EGKEEVDARSVYVGNVDYACTPEEVQLHFQT-CGTVNRVTILMDKFGQPKGFAYVEFVEV 139
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKTPV 433
E+ AL + L ++VSP +T V
Sbjct: 140 EAVQEALQLNESELHGRQLKVSPKRTNV 167
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 122 (48.0 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 47/176 (26%), Positives = 79/176 (44%)
Query: 264 IDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALNLAGTMLG 322
+ ++V+EE L G G +C + DP +R E +EAE + L+ +G
Sbjct: 1 MSERVSEEP--GLDKGDG-AEECEL-DDPELKAIRMRVREMEEEAERLKG-LSGQDKSIG 55
Query: 323 FYP---VRVLPSKTAIAPVN--PTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 377
P ++++ SK P E+++E+ R++Y N+D T D++ F S
Sbjct: 56 VSPRPCMKLIHSKMTAGEYTEGPPRPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSS 115
Query: 378 VCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
CG + R+ +L D H A++EF S AA+ V I+V P +T
Sbjct: 116 -CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRT 170
Score = 110 (43.8 bits), Expect = 0.00073, P = 0.00073
Identities = 30/100 (30%), Positives = 52/100 (52%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S +++EI +R+VYV ++D T + L A F CG + + C + G P +A+I
Sbjct: 83 SAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYI 139
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 341
EF E AA+ + T+ ++VLP +T + ++ T
Sbjct: 140 EFA-ERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
>DICTYBASE|DDB_G0277371 [details] [associations]
symbol:pabpn1 "polyadenylate-binding protein 2"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
OMA:FETEGQA Uniprot:Q54ZS8
Length = 222
Score = 121 (47.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 348 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMA 405
D+ E+ +R++Y N+D K T + +F+S CG V R+ +L D H +VEFV
Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQS-CGTVNRITILSDKTTGHPKGCCYVEFVNK 152
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKT--PVRPRAPRLP 441
ES I A+ + ++++P +T P R LP
Sbjct: 153 ESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLP 190
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 104 (41.7 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 28/73 (38%), Positives = 36/73 (49%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRI-CGDPNSVLR-FAFIEFTDEAEGARAALN 315
+VYV + Q TEE+L F GQ+ + RI C R FAFIEF +E RA
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 316 LAGTMLGFYPVRV 328
+ G P+RV
Sbjct: 66 MNGAEFNGRPLRV 78
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 123 (48.4 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 158 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 214
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 215 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 245
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 123 (48.4 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 158 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 214
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 215 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 245
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 123 (48.4 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 41/167 (24%), Positives = 78/167 (46%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
+Y+ ++++ + + + F G +++C + D + R + F+ F D E ARAA+
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHF-DSEEAARAAIEKV 173
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVKLFF 375
ML + + V F+PR + E+E + +Y N+ ++ T+ ++ F
Sbjct: 174 NGMLC--------NNQKVHVVK--FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 223
Query: 376 ESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAA-LNCSGVVLG 420
E G + +L+ D S R FV + +SA+AA + G LG
Sbjct: 224 EPY-GRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLG 269
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 126 (49.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 53/203 (26%), Positives = 89/203 (43%)
Query: 258 TVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNS-VLR-FAFIEFTDEAEGARAAL 314
+++V D+ V E + +LF +I DP + V R + F+ FTDE + A
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 315 NLAGTMLGFYPVRV---LPSKTA--IAPVN--PTFLPRT---------EDEREMCARTIY 358
+ G + G P+RV P A +PVN P +P + T++
Sbjct: 247 EMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVF 306
Query: 359 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGV 417
+ K V++ ++K F++ GE+ +++ FV+FV +SA A+N G
Sbjct: 307 VGGLSKFVSEEELKYLFQNF-GEIVYVKI----PPGKGCGFVQFVNRQSAEIAINQLQGY 361
Query: 418 VLGSLPIRVSPSKTPVRPRAPRL 440
LG+ IR+S + AP L
Sbjct: 362 PLGNSRIRLSWGRNQNPIAAPAL 384
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 118 (46.6 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 243 NSRTSLAQREEIIR---RTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNS 294
NS SL EE ++VYV ++D T E++ F GCG V + C R G P
Sbjct: 61 NSSQSLLTPEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKG 120
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
FA++EFT E EG + AL + ++L ++V P +T
Sbjct: 121 ---FAYVEFT-EKEGMQNALAMTDSLLRGRQIKVDPKRT 155
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 109 (43.4 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 56/204 (27%), Positives = 89/204 (43%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG- 290
K +F + + +S + ++ ++ V+V + VTE L F CG + + +I
Sbjct: 53 KSTFTKKESAAKDESSNTKTDDDLK--VFVGQLPSGVTEYDLKEYFSECGDISNIKILNS 110
Query: 291 DPNSVLRFAFIEFTDEAEGARAALNLAGTML-GFYPVRVLPSKTAIAPVNPTFLPRTEDE 349
+P V AFI F DE +G A+ G G +R+ + + P+ + E
Sbjct: 111 NPQRVA--AFITFADE-KGRDTAITYNGKDFNGQGSLRINGANS-----KPS-----DGE 157
Query: 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI---AFVEFVMAE 406
E TI C NI V + VK FF S CG + R+ L Y S R+ AFV F +
Sbjct: 158 GE--PTTIVCRNIAFTVDETLVKEFF-SKCGSISRVSL-PVYEDSGRLKGFAFVSFDSED 213
Query: 407 SAIAALNCSGVVLGSLPIRVSPSK 430
+ A+ +G I+V S+
Sbjct: 214 AVEKAIALTGTKFEGREIQVERSQ 237
Score = 53 (23.7 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 96 EGKKERKKETMAVVESASQDSAVSSAGS 123
E KK +K+E+ + ES+ +++A SS+ S
Sbjct: 9 ESKKRKKEESESETESSEENNASSSSES 36
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 121 (47.7 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 131 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 187
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 188 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 218
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 124 (48.7 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 57/215 (26%), Positives = 94/215 (43%)
Query: 234 SFGQGKRRMN--SRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVD 285
SF R+N S +S +R++ T++V D+ VT+ L F V +VV
Sbjct: 130 SFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVI 189
Query: 286 CRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP--SKTAIAPVNPTFL 343
R+ G + F+ F+DE+E RA + G P+R+ P SK + ++
Sbjct: 190 DRVTGRTKG---YGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQ 246
Query: 344 PRTED---EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFV 400
+ + T++ +D VT +K F S GE+ +++ R FV
Sbjct: 247 SSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVF-SQYGEIVHVKIPA----GKRCGFV 301
Query: 401 EFV---MAESAIAALNCSGVVLGSLPIRVSPSKTP 432
+F AE A+ LN GV LG +R+S ++P
Sbjct: 302 QFSEKSCAEEALRMLN--GVQLGGTTVRLSWGRSP 334
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 127 (49.8 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 48/177 (27%), Positives = 83/177 (46%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+ V+ +I+ + TEE++ LF G + +I PN + AFI F D +A NL
Sbjct: 177 KIVWAGNINPESTEEEVRHLFSQFGYLQAIKII--PNK--QCAFITFADVNCAIQAQFNL 232
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTED-----EREMCARTIYCTNIDKKVTQADV 371
GT+ P+++ K AP R + + E + ++ N++ V+ +
Sbjct: 233 NGTIFRGLPLKLGFGKVENAPQANFGGGRFDQYNKPHQEETPTKNLWLGNVNSNVSYELL 292
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
K F+ G V +R+L H AFV F ESA AA N +G ++ +P++++
Sbjct: 293 KQIFDQF-GNVDTIRIL----HGRGCAFVNFFTVESAAAARNGLNGTMVCGMPLKIN 344
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 102 (41.0 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNL 316
++Y++++D QV+EE L +F G+V+ + D R FAFIEF RA L++
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77
Query: 317 AGTMLG 322
G ++G
Sbjct: 78 DGRLIG 83
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 126 (49.4 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 57/200 (28%), Positives = 90/200 (45%)
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVL 296
+ + R R+S EE RRTV+VS + ++T +L F G V D +I D S
Sbjct: 220 RSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGR 279
Query: 297 R--FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA 354
A++EF E + +AA+ L+G L PV V ++ A N E R A
Sbjct: 280 SKGVAYVEFCHE-DSVQAAIALSGKRLLGLPVIVQLTE---AEKNRKAREAAELARAASA 335
Query: 355 RTIY---C-TNIDKKVTQADVKLFFESVCGEVYRLRLL-GDYHHSTRIAFVEF---VMAE 406
+ C +NI +T DVK FE G++ + L D + S ++++ + A
Sbjct: 336 EIPFHRLCVSNIHFNLTDEDVKAIFEPF-GDIEFVHLQRDDQNRSKGFGYIQYRNPISAR 394
Query: 407 SAIAALNCSGVVLGSLPIRV 426
+A+ +N G L +RV
Sbjct: 395 NALEKMN--GFDLAGRNMRV 412
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 122 (48.0 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 46/179 (25%), Positives = 77/179 (43%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVLGSLPIRVSPSKT 431
+ S G + ++ D H S FV F E+A A+N +G++L + V K+
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 126 (49.4 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 47/175 (26%), Positives = 76/175 (43%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL F G VV R+C D L + ++ FT+ + ARA
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L L P+RV+ S R R A I+ N+D+ + + F
Sbjct: 97 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
S G + ++ D ++ FV++ ESA A+ +G++L + V P
Sbjct: 145 SSF-GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 122 (48.0 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 55/215 (25%), Positives = 91/215 (42%)
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
FG + S + QR I VYV I ++ E+ + F G + + D +
Sbjct: 105 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 164
Query: 295 VLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRTEDER 350
+ FAF+E+ + E A+ AL + MLG ++V PS I P E+ R
Sbjct: 165 MKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 221
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESA 408
IY ++ + ++ D+K FE+ G++ L D F+E+ A+S+
Sbjct: 222 AF--NRIYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 278
Query: 409 IAALNCSGVV-LGSLPIRVSPSKTPVRPR-APRLP 441
A++ + LG +RV + TP P P P
Sbjct: 279 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 313
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 219 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 219 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 219 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 219 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 55/215 (25%), Positives = 91/215 (42%)
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
FG + S + QR I VYV I ++ E+ + F G + + D +
Sbjct: 64 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 123
Query: 295 VLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRTEDER 350
+ FAF+E+ + E A+ AL + MLG ++V PS I P E+ R
Sbjct: 124 MKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 180
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESA 408
IY ++ + ++ D+K FE+ G++ L D F+E+ A+S+
Sbjct: 181 AF--NRIYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 237
Query: 409 IAALNCSGVV-LGSLPIRVSPSKTPVRPR-APRLP 441
A++ + LG +RV + TP P P P
Sbjct: 238 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 272
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 122 (48.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 55/215 (25%), Positives = 92/215 (42%)
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
FG+ + S + QR I VYV I ++ E+ + F G + + D +
Sbjct: 108 FGKPLLPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 167
Query: 295 VLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRTEDER 350
+ FAF+E+ + E A+ AL + MLG ++V PS I P E+ R
Sbjct: 168 MKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 224
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESA 408
IY ++ + ++ D+K FE+ G++ L D F+E+ A+S+
Sbjct: 225 AF--NRIYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 281
Query: 409 IAALNCSGVV-LGSLPIRVSPSKTPVRPR-APRLP 441
A++ + LG +RV + TP P P P
Sbjct: 282 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 316
Score = 45 (20.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/58 (27%), Positives = 22/58 (37%)
Query: 89 ERVNQVQEGKKERKKETMAVVESASQDSAVSSAGSIPASNGQDHPKQNGGTMVMPLDQ 146
++VN Q G E AVV + + SI NGQ + G + P Q
Sbjct: 8 QQVNGQQGGGSEPAAAAAAVVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLTPEQQ 65
>UNIPROTKB|Q9U1N0 [details] [associations]
symbol:HRP65 "Hrp65 protein" species:7153 "Chironomus
tentans" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005856
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
EMBL:AJ243013 EMBL:AJ404654 ProteinModelPortal:Q9U1N0
InterPro:IPR012975 Pfam:PF08075 Uniprot:Q9U1N0
Length = 535
Score = 98 (39.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 28/88 (31%), Positives = 43/88 (48%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN 315
R +Y+ ++ VTEE+L LF G++ + I + N FAF++ A RA +
Sbjct: 112 RNRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKN----FAFLKIDYRANAERAKKD 167
Query: 316 LAGTMLGFYPVRV--LPSKTAIAPVNPT 341
L G M P+R+ P+ T I N T
Sbjct: 168 LDGRMRKNKPIRIRFAPNATTIRVKNLT 195
Score = 70 (29.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 122 GSIPASN-GQDHPKQNGGTMVMPLDQGLYNQNNQRSNGGGDFKRDMRELQELF 173
G P N Q+ PK M M +Q NQNN GGG KR+ + + F
Sbjct: 10 GPAPVKNENQNQPKPQRENMNMNKNQN-QNQNNNMGGGGGPNKRNNMNMNKNF 61
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 152 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 208
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 209 EFSDK-ESVRTSLALDESLFRGRQIKVVPKRT 239
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 153 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYI 209
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 210 EFSDK-ESVRTSLALDESLFRGRQIKVVPKRT 240
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 125 (49.1 bits), Expect = 0.00018, P = 0.00018
Identities = 49/177 (27%), Positives = 81/177 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN 315
++YV D+++ VTE L +F G V R+C D L +A++ + + A+ RA
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T + P R++ S +P+ R+ I+ N+DK + D K F
Sbjct: 77 LNYTNIKGQPARLMWSHR-----DPSL-------RKSGTGNIFVKNLDKSI---DNKALF 121
Query: 376 E--SVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+ S+ G + ++ D + S FV + ESA A+ +GV LGS + V P
Sbjct: 122 DTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 125 (49.1 bits), Expect = 0.00018, P = 0.00018
Identities = 49/177 (27%), Positives = 81/177 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN 315
++YV D+++ VTE L +F G V R+C D L +A++ + + A+ RA
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T + P R++ S +P+ R+ I+ N+DK + D K F
Sbjct: 77 LNYTNIKGQPARLMWSHR-----DPSL-------RKSGTGNIFVKNLDKSI---DNKALF 121
Query: 376 E--SVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+ S+ G + ++ D + S FV + ESA A+ +GV LGS + V P
Sbjct: 122 DTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 123 (48.4 bits), Expect = 0.00018, P = 0.00018
Identities = 49/190 (25%), Positives = 83/190 (43%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV--VDCRICGDPNSVLRFAFIEF 303
T + + ++ +YV I Q TE+++ + F CG + VDC++ + + AFI F
Sbjct: 150 TDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITF 209
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER----EMCA--RTI 357
D +GA+ AL +G R L + + P+ +PR + EM +
Sbjct: 210 -DTEDGAKRALAFDRAAMGD---RYLTIQQYVKTTTPS-IPRRKTSSGFAPEMVDGYNRV 264
Query: 358 YCTNIDKKVTQADV-KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSG 416
Y N+ T+ D+ KLF + V V RL + A V+F + S AL
Sbjct: 265 YIGNLAWDTTERDIRKLFSDCVINSV-RLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQ 323
Query: 417 VVLGSLPIRV 426
V+ P+++
Sbjct: 324 QVICGRPVKI 333
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 54/220 (24%), Positives = 96/220 (43%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEI--IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC 289
K++ ++++ + AQR+ I VYV I ++ E+ + F G + +
Sbjct: 84 KQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMS 143
Query: 290 GDPNSVLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPR 345
D ++ FAF+E+ + E A+ AL + MLG ++V PS I P
Sbjct: 144 WDSVTMKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQL 200
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFV 403
E+ R IY ++ + ++ D+K FE+ G++ L D F+E+
Sbjct: 201 AEEARAF--NRIYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYE 257
Query: 404 MAESAIAALNCSGVV-LGSLPIRVSPSKTPVRPR-APRLP 441
A+S+ A++ + LG +RV + TP P P P
Sbjct: 258 KAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 297
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 55/215 (25%), Positives = 91/215 (42%)
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
FG + S + QR I VYV I ++ E+ + F G + + D +
Sbjct: 70 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 129
Query: 295 VLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRTEDER 350
+ FAF+E+ + E A+ AL + MLG ++V PS I P E+ R
Sbjct: 130 MKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 186
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESA 408
IY ++ + ++ D+K FE+ G++ L D F+E+ A+S+
Sbjct: 187 AF--NRIYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 243
Query: 409 IAALNCSGVV-LGSLPIRVSPSKTPVRPR-APRLP 441
A++ + LG +RV + TP P P P
Sbjct: 244 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 278
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 123 (48.4 bits), Expect = 0.00019, P = 0.00019
Identities = 45/179 (25%), Positives = 82/179 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ Q VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ +P+ R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQR-----DPSL-------RKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431
+ S G + +++ D + S FV F E+A A++ +G++L + V K+
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 55/215 (25%), Positives = 91/215 (42%)
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
FG + S + QR I VYV I ++ E+ + F G + + D +
Sbjct: 78 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 137
Query: 295 VLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRTEDER 350
+ FAF+E+ + E A+ AL + MLG ++V PS I P E+ R
Sbjct: 138 MKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 194
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESA 408
IY ++ + ++ D+K FE+ G++ L D F+E+ A+S+
Sbjct: 195 AF--NRIYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 251
Query: 409 IAALNCSGVV-LGSLPIRVSPSKTPVRPR-APRLP 441
A++ + LG +RV + TP P P P
Sbjct: 252 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 286
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 55/215 (25%), Positives = 91/215 (42%)
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
FG + S + QR I VYV I ++ E+ + F G + + D +
Sbjct: 78 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 137
Query: 295 VLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRTEDER 350
+ FAF+E+ + E A+ AL + MLG ++V PS I P E+ R
Sbjct: 138 MKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 194
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESA 408
IY ++ + ++ D+K FE+ G++ L D F+E+ A+S+
Sbjct: 195 AF--NRIYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 251
Query: 409 IAALNCSGVV-LGSLPIRVSPSKTPVRPR-APRLP 441
A++ + LG +RV + TP P P P
Sbjct: 252 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 286
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 122 (48.0 bits), Expect = 0.00021, P = 0.00021
Identities = 55/215 (25%), Positives = 91/215 (42%)
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
FG + S + QR I VYV I ++ E+ + F G + + D +
Sbjct: 107 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 166
Query: 295 VLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRTEDER 350
+ FAF+E+ + E A+ AL + MLG ++V PS I P E+ R
Sbjct: 167 MKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 223
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESA 408
IY ++ + ++ D+K FE+ G++ L D F+E+ A+S+
Sbjct: 224 AF--NRIYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 280
Query: 409 IAALNCSGVV-LGSLPIRVSPSKTPVRPR-APRLP 441
A++ + LG +RV + TP P P P
Sbjct: 281 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 315
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 122 (48.0 bits), Expect = 0.00021, P = 0.00021
Identities = 55/215 (25%), Positives = 91/215 (42%)
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
FG + S + QR I VYV I ++ E+ + F G + + D +
Sbjct: 112 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 171
Query: 295 VLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRTEDER 350
+ FAF+E+ + E A+ AL + MLG ++V PS I P E+ R
Sbjct: 172 MKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 228
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESA 408
IY ++ + ++ D+K FE+ G++ L D F+E+ A+S+
Sbjct: 229 AF--NRIYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 285
Query: 409 IAALNCSGVV-LGSLPIRVSPSKTPVRPR-APRLP 441
A++ + LG +RV + TP P P P
Sbjct: 286 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 320
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 122 (48.0 bits), Expect = 0.00021, P = 0.00021
Identities = 55/215 (25%), Positives = 91/215 (42%)
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
FG + S + QR I VYV I ++ E+ + F G + + D +
Sbjct: 112 FGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 171
Query: 295 VLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRTEDER 350
+ FAF+E+ + E A+ AL + MLG ++V PS I P E+ R
Sbjct: 172 MKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 228
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESA 408
IY ++ + ++ D+K FE+ G++ L D F+E+ A+S+
Sbjct: 229 AF--NRIYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 285
Query: 409 IAALNCSGVV-LGSLPIRVSPSKTPVRPR-APRLP 441
A++ + LG +RV + TP P P P
Sbjct: 286 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 320
>DICTYBASE|DDB_G0289941 [details] [associations]
symbol:DDB_G0289941 "Nucleolar protein 12"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0289941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000149 eggNOG:COG0724
KO:K14837 RefSeq:XP_635997.1 ProteinModelPortal:Q54GS2
EnsemblProtists:DDB0188659 GeneID:8627412 KEGG:ddi:DDB_G0289941
InParanoid:Q54GS2 OMA:REIRIFP ProtClustDB:CLSZ2731818
Uniprot:Q54GS2
Length = 481
Score = 121 (47.7 bits), Expect = 0.00021, P = 0.00021
Identities = 51/201 (25%), Positives = 87/201 (43%)
Query: 239 KRRMNSRTSLAQREEIIRRTVYVSDID-QQVTEEQLAALFVGCGQVVDCRICGDPNSVL- 296
K +M+S+ REE RTV+VS+I+ + +L LF GQ+ R P S +
Sbjct: 242 KLKMDSKKI---REEQNPRTVFVSNINLNHAKDNELKQLFKPFGQIESIRFRSIPLSSID 298
Query: 297 ---RFAFI--EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDERE 351
+ FI EF ++ E A + + + K A + + +
Sbjct: 299 GNRKETFIKKEFHEKRETCNAYIVFKQIADAKKAAKQMNGKEAFGKHLRVDMADHKPTKA 358
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAF--VEFVMAESAI 409
A+TI+ NI + + ++ L F+ G+V +R++ D H + F V F E+A
Sbjct: 359 SDAKTIFIGNIPYETEEEELFLIFDKTFGDVVSVRIIRDSHTNIGKGFGYVNFSTDETAS 418
Query: 410 AALNCSGVVLGSLPIRVSPSK 430
A+ + G IR+ P+K
Sbjct: 419 TAIAQKSIQFGKREIRIFPTK 439
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 122 (48.0 bits), Expect = 0.00024, P = 0.00024
Identities = 46/179 (25%), Positives = 77/179 (43%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVLGSLPIRVSPSKT 431
+ S G + ++ D H S FV F E+A A+N +G++L + V K+
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 121 (47.7 bits), Expect = 0.00024, P = 0.00024
Identities = 37/113 (32%), Positives = 60/113 (53%)
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
P K +PV T +ER+ ART++C + ++ D++ FF +V G+V +R++
Sbjct: 126 PFKKDRSPVRQPIDNLTPEERD--ARTVFCMQLAARIRPRDLEEFFSAV-GKVRDVRIIS 182
Query: 390 DYH--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
D + S IA++EFV + S A+ SG L +PI V S+ + RA L
Sbjct: 183 DRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAE-KNRAAAL 234
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 122 (48.0 bits), Expect = 0.00025, P = 0.00025
Identities = 45/179 (25%), Positives = 81/179 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ Q VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ +P+ R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQR-----DPSL-------RKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431
+ S G + +++ D + S FV F E+A A+ +G++L + V K+
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 117 (46.2 bits), Expect = 0.00025, P = 0.00025
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 153 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 209
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF D+ E R +L L ++ ++V+P +T
Sbjct: 210 EFCDK-ESVRTSLALDESLFRGRQIKVVPKRT 240
>UNIPROTKB|Q5QP23 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 HOVERGEN:HBG057646
TIGRFAMs:TIGR01622 UniGene:Hs.282901 HGNC:HGNC:15923
HOGENOM:HOG000236253 ChiTaRS:RBM39 IPI:IPI00647282 SMR:Q5QP23
STRING:Q5QP23 Ensembl:ENST00000374038 Uniprot:Q5QP23
Length = 231
Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
Identities = 35/104 (33%), Positives = 57/104 (54%)
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
P + +PV T +ER+ ART++C + ++ D++ FF +V G+V +R++
Sbjct: 129 PFRKDKSPVREPIDNLTPEERD--ARTVFCMQLAARIRPRDLEEFFSTV-GKVRDVRMIS 185
Query: 390 DYH--HSTRIAFVEFVMAESAIAALNCSGV-VLGSLPIRVSPSK 430
D + S IA+VEFV S A+ +G VLG +PI V S+
Sbjct: 186 DRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLG-VPIIVQASQ 228
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 122 (48.0 bits), Expect = 0.00030, P = 0.00030
Identities = 44/173 (25%), Positives = 78/173 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D L +A++ + D A G RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
+ G + ++ D + S FV + AE+A A+ + +G++L + V
Sbjct: 151 AAF-GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV 202
Score = 121 (47.7 bits), Expect = 0.00039, P = 0.00039
Identities = 47/176 (26%), Positives = 75/176 (42%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D V + +
Sbjct: 114 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYG 173
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A I
Sbjct: 174 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNI 225
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
Y NID +V + + FE GE+ L D +R FV F ESA AA+
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKF-GEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 121 (47.7 bits), Expect = 0.00034, P = 0.00034
Identities = 50/174 (28%), Positives = 77/174 (44%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEAEGARAALNL 316
++Y D+D +VTE L LF VV R+C D N L +A+I F++ + RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 377 --SVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
S G + ++ D S FV+F ESA AA++ +G+++ + V
Sbjct: 155 TFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 119 (46.9 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 54/220 (24%), Positives = 96/220 (43%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEI--IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC 289
K++ ++++ + AQR+ I VYV I ++ E+ + F G + +
Sbjct: 86 KQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMS 145
Query: 290 GDPNSVLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPR 345
D ++ FAF+E+ + E A+ AL + MLG ++V PS I P
Sbjct: 146 WDSVTMKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQL 202
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFV 403
E+ R IY ++ + ++ D+K FE+ G++ L D F+E+
Sbjct: 203 AEEARAF--NRIYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYE 259
Query: 404 MAESAIAALNCSGVV-LGSLPIRVSPSKTPVRPR-APRLP 441
A+S+ A++ + LG +RV + TP P P P
Sbjct: 260 KAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 299
Score = 43 (20.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 16/57 (28%), Positives = 21/57 (36%)
Query: 90 RVNQVQEGKKERKKETMAVVESASQDSAVSSAGSIPASNGQDHPKQNGGTMVMPLDQ 146
+VN Q G E AVV + + SI NGQ + G + P Q
Sbjct: 9 QVNGQQGGGSEPAAAAAAVVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLTPEQQ 65
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
+VYV ++ Q TEE++ F G V + RI D + FAF+EF++EA RA
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 316 LAGTMLGFYPVRV 328
L G +RV
Sbjct: 67 LNGVAFNGRNLRV 79
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 122 (48.0 bits), Expect = 0.00037, P = 0.00037
Identities = 32/104 (30%), Positives = 54/104 (51%)
Query: 345 RTEDEREMCAR---TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHH--STRIAF 399
R ++E E R T+ N+D K + D+ FF V G+V ++ + D S +A+
Sbjct: 474 RLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAY 533
Query: 400 VEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
VEF E+ I AL +G++L + PI++ S+ + RA + H
Sbjct: 534 VEFYTQEAVIKALAANGMMLKNRPIKIQSSQAE-KNRAAKAAKH 576
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 122 (48.0 bits), Expect = 0.00037, P = 0.00037
Identities = 32/104 (30%), Positives = 54/104 (51%)
Query: 345 RTEDEREMCAR---TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHH--STRIAF 399
R ++E E R T+ N+D K + D+ FF V G+V ++ + D S +A+
Sbjct: 474 RLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAY 533
Query: 400 VEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
VEF E+ I AL +G++L + PI++ S+ + RA + H
Sbjct: 534 VEFYTQEAVIKALAANGMMLKNRPIKIQSSQAE-KNRAAKAAKH 576
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 120 (47.3 bits), Expect = 0.00040, P = 0.00040
Identities = 44/179 (24%), Positives = 81/179 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ +P+ R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQR-----DPSL-------RKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431
+ S G + +++ D + S AFV F E+A A+ +G++L + V K+
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 120 (47.3 bits), Expect = 0.00041, P = 0.00041
Identities = 44/179 (24%), Positives = 81/179 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ +P+ R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQR-----DPSL-------RKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431
+ S G + +++ D + S AFV F E+A A+ +G++L + V K+
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 120 (47.3 bits), Expect = 0.00041, P = 0.00041
Identities = 44/179 (24%), Positives = 81/179 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ +P+ R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQR-----DPSL-------RKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431
+ S G + +++ D + S AFV F E+A A+ +G++L + V K+
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 120 (47.3 bits), Expect = 0.00041, P = 0.00041
Identities = 44/179 (24%), Positives = 81/179 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ +P+ R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQR-----DPSL-------RKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431
+ S G + +++ D + S AFV F E+A A+ +G++L + V K+
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 49/188 (26%), Positives = 86/188 (45%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEA 307
++++ ++ +YV D+D VTE+ L F G + RIC DP S L + ++ F A
Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70
Query: 308 EGARAALNLAG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE-REMCARTIYCTNIDKK 365
+ A ALN ++ P R++ S+ P +D R+ I+ N+DK
Sbjct: 71 D-AEWALNTMNFDLINGKPFRLMWSQ----P---------DDRLRKSGVGNIFIKNLDKS 116
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPI 424
+ + F S G + +++ D + S A+V F +A A+ + +GV L + +
Sbjct: 117 IDNRALFYLF-SAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
Query: 425 RVSPSKTP 432
V K P
Sbjct: 176 YVGRFKFP 183
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 49/188 (26%), Positives = 86/188 (45%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEA 307
++++ ++ +YV D+D VTE+ L F G + RIC DP S L + ++ F A
Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70
Query: 308 EGARAALNLAG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE-REMCARTIYCTNIDKK 365
+ A ALN ++ P R++ S+ P +D R+ I+ N+DK
Sbjct: 71 D-AEWALNTMNFDLINGKPFRLMWSQ----P---------DDRLRKSGVGNIFIKNLDKS 116
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPI 424
+ + F S G + +++ D + S A+V F +A A+ + +GV L + +
Sbjct: 117 IDNRALFYLF-SAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
Query: 425 RVSPSKTP 432
V K P
Sbjct: 176 YVGRFKFP 183
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 48/187 (25%), Positives = 85/187 (45%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEA 307
++++ ++ +YV D+D VTE+ L F G + RIC DP S L + ++ F A
Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70
Query: 308 EGARAALNLAG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV 366
+ A ALN ++ P R++ S+ P + R+ I+ N+DK +
Sbjct: 71 D-AEWALNTMNFDLINGKPFRLMWSQ----P--------DDHLRKSGVGNIFIKNLDKSI 117
Query: 367 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIR 425
+ F S G + +++ D + S A+V F +A A+ + +GV L + +
Sbjct: 118 DNRALFYLF-SAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVY 176
Query: 426 VSPSKTP 432
V K P
Sbjct: 177 VGRFKFP 183
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 120 (47.3 bits), Expect = 0.00042, P = 0.00042
Identities = 44/179 (24%), Positives = 81/179 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ +P+ R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQR-----DPSL-------RKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431
+ S G + +++ D + S AFV F E+A A+ +G++L + V K+
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 120 (47.3 bits), Expect = 0.00042, P = 0.00042
Identities = 44/179 (24%), Positives = 81/179 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ +P+ R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQR-----DPSL-------RKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431
+ S G + +++ D + S AFV F E+A A+ +G++L + V K+
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 119 (46.9 bits), Expect = 0.00042, P = 0.00042
Identities = 56/215 (26%), Positives = 89/215 (41%)
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
FG + S + QR I VYV I ++ E+ + F G + + D +
Sbjct: 71 FGDPLSPLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 130
Query: 295 VLR--FAFIEFTDEAEGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRTEDER 350
+ FAF+E+ + E A+ AL + MLG ++V PS I P E+ R
Sbjct: 131 LKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 187
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESA 408
IY ++ ++ D+K FE+ G + L D F+E+ A+SA
Sbjct: 188 AF--NRIYVASVHPDLSDDDIKSVFEAF-GRIKSCSLARDPTTGKHKGYGFIEYDKAQSA 244
Query: 409 IAALNCSGVV-LGSLPIRVSPSKTPVRPR-APRLP 441
A++ + LG +RV + TP P P P
Sbjct: 245 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 279
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 120 (47.3 bits), Expect = 0.00044, P = 0.00044
Identities = 44/179 (24%), Positives = 81/179 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ +P+ R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQR-----DPSL-------RKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431
+ S G + +++ D + S AFV F E+A A+ +G++L + V K+
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKS 175
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 119 (46.9 bits), Expect = 0.00045, P = 0.00045
Identities = 44/183 (24%), Positives = 87/183 (47%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
I ++YV D+ +V+E+ L +F G V + R+C D N+ L +A++ + + A+ RA
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T P+R + + +P+ R+ ++ N+DK + D K
Sbjct: 68 LDTLNNT-----PIRGKACRIMWSQRDPSL-------RKSGVGNVFIKNLDKGI---DHK 112
Query: 373 LFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
++ S G + +++ D +S++ FV + ESA A+ +G+++ + V P
Sbjct: 113 ALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGP 172
Query: 429 SKT 431
K+
Sbjct: 173 FKS 175
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 116 (45.9 bits), Expect = 0.00053, P = 0.00053
Identities = 49/188 (26%), Positives = 86/188 (45%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEA 307
++++ ++ +YV D+D VTE+ L F G + RIC DP S L + ++ F A
Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70
Query: 308 EGARAALNLAG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE-REMCARTIYCTNIDKK 365
+ A ALN ++ P R++ S+ P +D R+ I+ N+DK
Sbjct: 71 D-AEWALNTMNFDLINGKPFRLMWSQ----P---------DDRLRKSGIGNIFIKNLDKS 116
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPI 424
+ + F S G + +++ D + S A+V F +A A+ + +GV L + +
Sbjct: 117 IDNRALFYLF-SAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
Query: 425 RVSPSKTP 432
V K P
Sbjct: 176 YVGRFKFP 183
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 119 (46.9 bits), Expect = 0.00055, P = 0.00055
Identities = 44/173 (25%), Positives = 80/173 (46%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF G V R+C D L +A++ F + +G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ +P+ R+M ++ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQR-----DPSL-------RKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
S G++ ++ D + + FV F ESA AA+ + +G++L + V
Sbjct: 189 -SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 122 (48.0 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 46/178 (25%), Positives = 72/178 (40%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEAEGARAALN 315
+T++ ++ Q+ + F G+VVD R+ D S + IEF E A+ AL
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEE-AQKALE 442
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ G +L VR+ + P N P + E +RTIY + + ++K
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSN--PGRKGEGSQ-SRTIYVRGFSSSLGEDEIKKEL 499
Query: 376 ES---VCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
S CGEV R+ + D F + AL SG +G I V S+
Sbjct: 500 RSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEALQLSGSEIGGGNIHVEESR 557
Score = 39 (18.8 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 99 KERKKETMAVVESASQDSAVSSAGSIPASNGQDHPKQ 135
K++KKE + VV+ + V +S+ D ++
Sbjct: 39 KKQKKELIDVVQKEKAEKTVPKKVESSSSDASDSDEE 75
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 116 (45.9 bits), Expect = 0.00065, P = 0.00065
Identities = 50/195 (25%), Positives = 84/195 (43%)
Query: 258 TVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAAL 314
+++V D+ V++ L F V ++ D N+ + F+ F DE E +A
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 315 NLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPR---TEDEREMCARTIYCTNIDKKVTQ 368
+ G +R+ P KT ++P T E ++ TI+ +D VT
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 369 ADVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVM---AESAIAALNCSGVVLGSLPI 424
D+K F GE+ +++ +G FV+FV AE A+ LN G V+G +
Sbjct: 318 EDLKQPFNEF-GEIVSVKIPVGK-----GCGFVQFVNRPNAEEALEKLN--GTVIGKQTV 369
Query: 425 RVSPSKTPVRPRAPR 439
R+S + P + PR
Sbjct: 370 RLSWGRNPAN-KQPR 383
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 115 (45.5 bits), Expect = 0.00066, P = 0.00066
Identities = 43/196 (21%), Positives = 85/196 (43%)
Query: 239 KRRMNSRTSLAQREEIIRRT-VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVL- 296
K R + L RE+ T VY+ + + +E L ++F GQ + ++ D +
Sbjct: 173 KSRKDREAEL--REKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSK 230
Query: 297 RFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAI---APVNPTFLPRTEDE-REM 352
RF F+ F A ++ G + + V ++ + A + F ++ R
Sbjct: 231 RFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRAR 290
Query: 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
A +Y N+D + ++ F SV G + R++++ + S + F E+A A+
Sbjct: 291 QAAKLYIKNLDDTIDDETLRKEF-SVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAM 349
Query: 413 -NCSGVVLGSLPIRVS 427
+G +LGS P+ ++
Sbjct: 350 AEMNGRILGSKPLNIA 365
>UNIPROTKB|H0Y4X3 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
HGNC:HGNC:15923 ChiTaRS:RBM39 ProteinModelPortal:H0Y4X3
PRIDE:H0Y4X3 Ensembl:ENST00000448303 Bgee:H0Y4X3 Uniprot:H0Y4X3
Length = 337
Score = 114 (45.2 bits), Expect = 0.00072, P = 0.00072
Identities = 35/104 (33%), Positives = 57/104 (54%)
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
P + +PV T +ER+ ART++C + ++ D++ FF +V G+V +R++
Sbjct: 3 PFRKDKSPVREPIDNLTPEERD--ARTVFCMQLAARIRPRDLEEFFSTV-GKVRDVRMIS 59
Query: 390 DYH--HSTRIAFVEFVMAESAIAALNCSGV-VLGSLPIRVSPSK 430
D + S IA+VEFV S A+ +G VLG +PI V S+
Sbjct: 60 DRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLG-VPIIVQASQ 102
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 110 (43.8 bits), Expect = 0.00073, P = 0.00073
Identities = 49/176 (27%), Positives = 81/176 (46%)
Query: 264 IDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALNLAGTMLG 322
+ ++V+EE L G + +C + DP +R E +EAE + L+ +G
Sbjct: 1 MSERVSEEP--GLDKG-DRAEECEL-DDPELKAIRMRVREMEEEAERLKG-LSGQDKSIG 55
Query: 323 FY--P-VRVLPSK-TAIAPVNPTFLPRT-EDEREMCARTIYCTNIDKKVTQADVKLFFES 377
P ++ SK TA A P + E+++E+ R++Y N+D T D++ F S
Sbjct: 56 VSTRPCMQTTHSKMTAGAYTEGPPQPLSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSS 115
Query: 378 VCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
CG + R+ +L D H A++EF S AA+ V I+V P +T
Sbjct: 116 -CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 170
Score = 109 (43.4 bits), Expect = 0.00096, P = 0.00096
Identities = 30/100 (30%), Positives = 52/100 (52%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S +++EI +R+VYV ++D T + L A F CG + + C + G P +A+I
Sbjct: 83 SAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYI 139
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 341
EF E AA+ + T+ ++VLP +T + ++ T
Sbjct: 140 EFA-ERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISST 178
>UNIPROTKB|Q5QP21 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL357374
IPI:IPI00514831 UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
SMR:Q5QP21 STRING:Q5QP21 Ensembl:ENST00000427743 Uniprot:Q5QP21
Length = 202
Score = 109 (43.4 bits), Expect = 0.00074, P = 0.00074
Identities = 33/98 (33%), Positives = 54/98 (55%)
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
P + +PV T +ER+ ART++C + ++ D++ FF +V G+V +R++
Sbjct: 108 PFRKDKSPVREPIDNLTPEERD--ARTVFCMQLAARIRPRDLEEFFSTV-GKVRDVRMIS 164
Query: 390 DYH--HSTRIAFVEFVMAESAIAALNCSGV-VLGSLPI 424
D + S IA+VEFV S A+ +G VLG +PI
Sbjct: 165 DRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLG-VPI 201
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 105 (42.0 bits), Expect = 0.00075, P = 0.00075
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 248 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTD 305
LA++EEI R+VYV ++D Q T EQL F G G + I D S L +A+IEF +
Sbjct: 19 LAKQEEIDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEF-E 77
Query: 306 EAEGARAALN-LAGTMLGFYPVRVLPSKT 333
+ E + A++ L G +RV +T
Sbjct: 78 QTESVQKAIDELHGKEFRGRELRVTAKRT 106
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 113 (44.8 bits), Expect = 0.00087, P = 0.00087
Identities = 53/190 (27%), Positives = 91/190 (47%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAE 308
R++I R + V+ + Q +T+++L +LF G+V ++ D L + F+ + + A+
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLN-AK 72
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRTEDEREMCARTIYCTNIDKKVT 367
A A+N T+ G +R L SKT + +F P +E ++ +Y + + + +T
Sbjct: 73 DAERAIN---TLNG---LR-LQSKT----IKVSFARPSSETIKDA---NLYISGLPRTMT 118
Query: 368 QADVKLFFESVCGEVYRLRLLGDYHH--STRIAFVEFVM---AESAIAALNCSGVVLGSL 422
Q DV+ F G + R+L D S +AF+ F AE AIA+ N S
Sbjct: 119 QKDVEDMFLPF-GHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSE 177
Query: 423 PIRVSPSKTP 432
PI V + P
Sbjct: 178 PITVKFAANP 187
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 113 (44.8 bits), Expect = 0.00087, P = 0.00087
Identities = 53/189 (28%), Positives = 89/189 (47%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAE 308
R++I R + V+ + Q +T+++L +LF G+V ++ D L + F+ + + A+
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLN-AK 72
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQ 368
A A+N T+ G +R L SKT V P +E ++ +Y + + + +TQ
Sbjct: 73 DAERAIN---TLNG---LR-LQSKTIKVSVAR---PSSESIKDA---NLYISGLPRTMTQ 119
Query: 369 ADVKLFFESVCGEVYRLRLLGDYHH--STRIAFVEFVM---AESAIAALNCSGVVLGSLP 423
DV+ F G + R+L D S +AF+ F AE AIA+ N S P
Sbjct: 120 KDVEDMFLPF-GRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEP 178
Query: 424 IRVSPSKTP 432
I V + P
Sbjct: 179 ITVKFAANP 187
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 117 (46.2 bits), Expect = 0.00088, P = 0.00088
Identities = 44/179 (24%), Positives = 81/179 (45%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ +P+ R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQR-----DPSL-------RKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431
+ S G + +++ D + S FV F E+A A++ +G++L + V K+
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
>POMBASE|SPBC428.12c [details] [associations]
symbol:SPBC428.12c "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC428.12c GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q9UNP9 PIR:T40464 RefSeq:NP_595190.1 ProteinModelPortal:O94359
EnsemblFungi:SPBC428.12c.1 GeneID:2540852 KEGG:spo:SPBC428.12c
eggNOG:NOG331137 OrthoDB:EOG4TJ03G NextBio:20801968 Uniprot:O94359
Length = 116
Score = 92 (37.4 bits), Expect = 0.00096, P = 0.00096
Identities = 28/91 (30%), Positives = 50/91 (54%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL 314
+ TV+V ++ VTE L F+ G+++ + +V R +AF+EF DE E A+ A+
Sbjct: 5 KATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEF-DEPEDAKEAM 63
Query: 315 -NLAGTMLGFYPVRVLPSKTAIAPVNPTFLP 344
N+ ++L +RV P+ A++ T +P
Sbjct: 64 ENMNYSILCDRCIRVSPANFALS-AEETAVP 93
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 114 (45.2 bits), Expect = 0.00099, P = 0.00099
Identities = 52/200 (26%), Positives = 86/200 (43%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEA 307
QR I VYV I ++ E+ + F G + + D ++ FAF+E+ +
Sbjct: 14 QRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEY-EVP 72
Query: 308 EGARAALN-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK 365
E A+ AL + MLG ++V PS I P E+ R IY ++ +
Sbjct: 73 EAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF--NRIYVASVHQD 128
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESAIAALNCSGVV-LGSL 422
++ D+K FE+ G++ L D F+E+ A+S+ A++ + LG
Sbjct: 129 LSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ 187
Query: 423 PIRVSPSKTPVRPR-APRLP 441
+RV + TP P P P
Sbjct: 188 YLRVGKAVTPPMPLLTPATP 207
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 443 369 0.00085 117 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 106
No. of states in DFA: 609 (65 KB)
Total size of DFA: 229 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.26u 0.07s 30.33t Elapsed: 00:00:01
Total cpu time: 30.28u 0.07s 30.35t Elapsed: 00:00:01
Start: Fri May 10 19:34:29 2013 End: Fri May 10 19:34:30 2013
WARNINGS ISSUED: 1