BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013446
(443 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255555781|ref|XP_002518926.1| RNA-binding protein, putative [Ricinus communis]
gi|223541913|gb|EEF43459.1| RNA-binding protein, putative [Ricinus communis]
Length = 379
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/385 (69%), Positives = 297/385 (77%), Gaps = 53/385 (13%)
Query: 106 MAVVESASQDSAVSSAGSIPAS------------NGQDHPKQN-----------GGTMVM 142
MA+VE+AS D +S + +S N QDH N +
Sbjct: 1 MAIVENASVDLGISIGSASSSSSSLDSSVSSASSNDQDHSNHNNSHDHGRSLIENSISIQ 60
Query: 143 P-------------LDQGLYNQNNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLA 189
P L + ++QRS+GGGD +RD+RELQELFSKLNPMAEEFVPPSLA
Sbjct: 61 PLYMKAQVQSPPPNLQVAQLHHHHQRSSGGGDLQRDIRELQELFSKLNPMAEEFVPPSLA 120
Query: 190 K---TNNNNHGVNGFNGGFFANNSLIFNNHN--------ARNGNVNANAAVRRKKSFGQG 238
+NN HG+NG N GF+ NN NN++ +RNG +N +AA RRKK++ QG
Sbjct: 121 NNKISNNYIHGLNGLNVGFYTNN----NNYDPAFMLTNASRNGQLNGSAA-RRKKNYNQG 175
Query: 239 KRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF 298
KRR+NSRTS+AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF
Sbjct: 176 KRRLNSRTSMAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF 235
Query: 299 AFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIY 358
AFIEFT E EGARAALNLAGT+LG+YPVRVLPSKTAIAPVNPTFLPR++DEREMC RTIY
Sbjct: 236 AFIEFTHE-EGARAALNLAGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCIRTIY 294
Query: 359 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVV 418
CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVV
Sbjct: 295 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVV 354
Query: 419 LGSLPIRVSPSKTPVRPRAPRLPMH 443
LGSLPIRVSPSKTPVRPRAPR+PMH
Sbjct: 355 LGSLPIRVSPSKTPVRPRAPRIPMH 379
>gi|297742454|emb|CBI34603.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 246/295 (83%), Positives = 259/295 (87%), Gaps = 20/295 (6%)
Query: 154 QRSNGG-----GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFAN 208
RSNGG GD DMRELQELFSKLNPMAEEFVPPSLA NG NGGF++N
Sbjct: 118 HRSNGGHLQRNGDSGVDMRELQELFSKLNPMAEEFVPPSLAN--------NGLNGGFYSN 169
Query: 209 NSLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQV 268
S NN RNG VN RRK +FGQGKRRMNSRTS+AQREEIIRRTVYVSDIDQQV
Sbjct: 170 GSETHNN--TRNGQVNG----RRKNNFGQGKRRMNSRTSMAQREEIIRRTVYVSDIDQQV 223
Query: 269 TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
TEE+LAALF+ CGQVVDCR+CGDPNSVLRFAF+EFTDE EGARAAL+LAGTMLG+YPVRV
Sbjct: 224 TEEKLAALFITCGQVVDCRVCGDPNSVLRFAFVEFTDE-EGARAALSLAGTMLGYYPVRV 282
Query: 329 LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL 388
LPSKTAIAPVNPTFLPR EDEREMCARTIYCTNIDKKV+QADVKLFFESVCGEVYRLRLL
Sbjct: 283 LPSKTAIAPVNPTFLPRNEDEREMCARTIYCTNIDKKVSQADVKLFFESVCGEVYRLRLL 342
Query: 389 GDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
GDYHHSTRIAFVEF+MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLP+H
Sbjct: 343 GDYHHSTRIAFVEFIMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPIH 397
>gi|359474160|ref|XP_002272303.2| PREDICTED: polyadenylate-binding protein [Vitis vinifera]
Length = 398
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 245/295 (83%), Positives = 259/295 (87%), Gaps = 19/295 (6%)
Query: 154 QRSNGG-----GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFAN 208
RSNGG GD DMRELQELFSKLNPMAEEFVPPSLA NG NGGF++N
Sbjct: 118 HRSNGGHLQRNGDSGVDMRELQELFSKLNPMAEEFVPPSLAN--------NGLNGGFYSN 169
Query: 209 NSLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQV 268
S NN RNG VN R+K +FGQGKRRMNSRTS+AQREEIIRRTVYVSDIDQQV
Sbjct: 170 GSETHNN--TRNGQVNGR---RKKNNFGQGKRRMNSRTSMAQREEIIRRTVYVSDIDQQV 224
Query: 269 TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
TEE+LAALF+ CGQVVDCR+CGDPNSVLRFAF+EFTDE EGARAAL+LAGTMLG+YPVRV
Sbjct: 225 TEEKLAALFITCGQVVDCRVCGDPNSVLRFAFVEFTDE-EGARAALSLAGTMLGYYPVRV 283
Query: 329 LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL 388
LPSKTAIAPVNPTFLPR EDEREMCARTIYCTNIDKKV+QADVKLFFESVCGEVYRLRLL
Sbjct: 284 LPSKTAIAPVNPTFLPRNEDEREMCARTIYCTNIDKKVSQADVKLFFESVCGEVYRLRLL 343
Query: 389 GDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
GDYHHSTRIAFVEF+MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLP+H
Sbjct: 344 GDYHHSTRIAFVEFIMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPIH 398
>gi|15235177|ref|NP_192799.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
gi|4115925|gb|AAD03436.1| contains similarity to RNA recognition motifs (Pfam: PF00076,
Score=5.5e-23, N=2) [Arabidopsis thaliana]
gi|4539439|emb|CAB40027.1| RNA-binding protein [Arabidopsis thaliana]
gi|4959384|gb|AAD34325.1| RNA-binding protein [Arabidopsis thaliana]
gi|7267758|emb|CAB78184.1| RNA-binding protein [Arabidopsis thaliana]
gi|14517528|gb|AAK62654.1| AT4g10610/T4F9_70 [Arabidopsis thaliana]
gi|18700204|gb|AAL77712.1| AT4g10610/T4F9_70 [Arabidopsis thaliana]
gi|21592407|gb|AAM64358.1| RNA-binding protein [Arabidopsis thaliana]
gi|332657507|gb|AEE82907.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
Length = 336
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 254/357 (71%), Positives = 277/357 (77%), Gaps = 40/357 (11%)
Query: 106 MAVVESASQDSAVSSAGSIP-------------ASNGQDHPKQNGGTMVMPLDQGLYNQ- 151
MAV+ES ++ V + G I AS+ DH GG G++++
Sbjct: 1 MAVIESVGANTTVEAGGLISPSPPSSVTSQESGASSNNDH----GG-------NGIHDEI 49
Query: 152 --NNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFA-N 208
+ RS+GG FKRDMREL EL SKLNPMA+EF+PPSL K VNGFNGGFFA N
Sbjct: 50 GVHVARSDGGESFKRDMRELHELLSKLNPMAKEFIPPSLTKPV-----VNGFNGGFFAVN 104
Query: 209 NSLIFNNHNARNGNVNANAAVRRKKSFGQ-GKRRMNSRTSLAQREEIIRRTVYVSDIDQQ 267
N + A N VN + + RRKKSFGQ GKRRMN RTSLAQREEIIRRTVYVSDIDQQ
Sbjct: 105 NGFV----AAGNFPVNEDGSFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQ 160
Query: 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR 327
VTEEQLA LF+G GQVVDCRICGDPNSVLRFAFIEFTDE GAR ALNL+GTMLGFYPV+
Sbjct: 161 VTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDEV-GARTALNLSGTMLGFYPVK 219
Query: 328 VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 387
V+PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK+TQ D+KLFFESVCGEVYRLRL
Sbjct: 220 VMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRL 279
Query: 388 LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRA-PRLPMH 443
LGDYHH TRI FVEFVMAESAIAALNCSGV+LGSLPIRVSPSKTPVR RA PR MH
Sbjct: 280 LGDYHHPTRIGFVEFVMAESAIAALNCSGVLLGSLPIRVSPSKTPVRSRAIPRHQMH 336
>gi|15223304|ref|NP_174556.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
gi|6714278|gb|AAF25974.1|AC017118_11 F6N18.17 [Arabidopsis thaliana]
gi|332193408|gb|AEE31529.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
Length = 358
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/340 (73%), Positives = 269/340 (79%), Gaps = 21/340 (6%)
Query: 112 ASQDSAVSSAGSIPASNGQDHPKQNGGTMVMPLDQGLYNQ------NNQRSNGGGDFKRD 165
SQDS VSS + Q+H + V+ DQGLY++ + +GG FKRD
Sbjct: 32 TSQDSGVSS-------DDQNH--HSRIDQVLRHDQGLYSKIGSHVARSDGVDGGESFKRD 82
Query: 166 MRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFN--GGFFANNSLIFNNHNARNGNV 223
MRELQELFSKLNPMAEEFVPPSL K N F G FF NN +
Sbjct: 83 MRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGNGG---YG 139
Query: 224 NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV 283
N N RRKKSFGQGKRRMN+RTS+AQRE++IRRTVYVSD+DQQVTEEQLA LFV CGQV
Sbjct: 140 NENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQV 199
Query: 284 VDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
VDCRICGDPNSVLRFAFIEFTDE EGA ALNL+GTMLGFYPV+VLPSKTAIAPVNPTFL
Sbjct: 200 VDCRICGDPNSVLRFAFIEFTDE-EGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFL 258
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV 403
PRTEDEREMCARTIYCTNIDKKVTQ+DVK+FFES CGEVYRLRLLGDY HSTRIAFVEFV
Sbjct: 259 PRTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFV 318
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPR+PR PMH
Sbjct: 319 MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRHPMH 358
>gi|297809287|ref|XP_002872527.1| RNA-binding protein 37 [Arabidopsis lyrata subsp. lyrata]
gi|297318364|gb|EFH48786.1| RNA-binding protein 37 [Arabidopsis lyrata subsp. lyrata]
Length = 336
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 252/351 (71%), Positives = 271/351 (77%), Gaps = 28/351 (7%)
Query: 106 MAVVESASQDSAVSSAGSIPA---------SNGQDHPKQNGGTMVMPLDQGLYNQNNQRS 156
MAV+ES ++ V + G I +G +GG + G + RS
Sbjct: 1 MAVIESVGANTTVEAGGLISPSPPSSVTSQESGVSSNNDHGGNEI----HGEIGVHVARS 56
Query: 157 NGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNH 216
+G FKRDMREL EL SKLNPMA+EFVPPSL K VNGFNGGFFA NN
Sbjct: 57 DGDESFKRDMRELHELLSKLNPMAKEFVPPSLTKPV-----VNGFNGGFFA-----VNNG 106
Query: 217 NARNGN--VNANAAVRRKKSFGQ-GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQL 273
GN VN + RRKKSFGQ GKRRMN RTSLAQREEIIRRTVYVSDIDQQVTEEQL
Sbjct: 107 FGAAGNFPVNEDGGFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQL 166
Query: 274 AALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
A LF+G GQVVDCRICGDPNSVLRFAFIEFTDE GARAAL+L+GTMLGFYPV+V+PSKT
Sbjct: 167 AGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDEV-GARAALSLSGTMLGFYPVKVMPSKT 225
Query: 334 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHH 393
AIAPVNPTFLPRTEDEREMCARTIYCTNIDKK+TQAD+KLFFESVCGEVYRLRLLGDYHH
Sbjct: 226 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQADIKLFFESVCGEVYRLRLLGDYHH 285
Query: 394 STRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRA-PRLPMH 443
TRI FVEFVMAESAIAALNCSGV+LGSLPIRVSPSKTPVR RA PR MH
Sbjct: 286 PTRIGFVEFVMAESAIAALNCSGVLLGSLPIRVSPSKTPVRSRAVPRHQMH 336
>gi|1174153|gb|AAA86641.1| RNA-binding protein [Arabidopsis thaliana]
Length = 336
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 252/357 (70%), Positives = 275/357 (77%), Gaps = 40/357 (11%)
Query: 106 MAVVESASQDSAVSSAGSIP-------------ASNGQDHPKQNGGTMVMPLDQGLYNQ- 151
MAV+ES ++ V + G I AS+ DH GG G++++
Sbjct: 1 MAVIESVGANTTVEAGGLISPSPPSSVTSQESGASSNNDH----GG-------NGIHDEI 49
Query: 152 --NNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFA-N 208
+ RS+GG FKRDMREL EL SKLNPMA+EF+PPSL K VNGFNGGFFA N
Sbjct: 50 GVHVARSDGGESFKRDMRELHELLSKLNPMAKEFIPPSLTKPV-----VNGFNGGFFAVN 104
Query: 209 NSLIFNNHNARNGNVNANAAVRRKKSFGQ-GKRRMNSRTSLAQREEIIRRTVYVSDIDQQ 267
N + A N VN + + RRKKSFGQ GKRRMN RTSLAQREEIIRRTVYVSDI QQ
Sbjct: 105 NGFV----AAGNFPVNEDGSFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIYQQ 160
Query: 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR 327
VTEEQLA LF+G GQVVDCRICGDPNSVLRFAFIEFTDE GAR ALNL+GTMLGFYPV+
Sbjct: 161 VTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDEV-GARTALNLSGTMLGFYPVK 219
Query: 328 VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 387
V+PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK+TQ D+KLFFESVCGEVYRLRL
Sbjct: 220 VMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRL 279
Query: 388 LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRA-PRLPMH 443
LGDYHH TRI FVEFVMAESAI ALNCSGV+LGSLPIRVSPSKTPVR RA PR MH
Sbjct: 280 LGDYHHPTRIGFVEFVMAESAIGALNCSGVLLGSLPIRVSPSKTPVRSRAIPRHQMH 336
>gi|225455232|ref|XP_002272223.1| PREDICTED: uncharacterized protein LOC100245327 [Vitis vinifera]
gi|302143972|emb|CBI23077.3| unnamed protein product [Vitis vinifera]
Length = 361
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/371 (65%), Positives = 275/371 (74%), Gaps = 43/371 (11%)
Query: 106 MAVVESASQDSAVSSAGSIPASN---GQDHPKQ------------NGGTMVMPLDQGLYN 150
MAVVE+A SSA S A GQ P N +++P D+ Y+
Sbjct: 1 MAVVENAGNKVGSSSANSESADTNDFGQSQPSNHTVMQNLQQKNTNSKPILLPNDENYYS 60
Query: 151 Q------NNQRSNGG------GDFKRD------MRELQELFSKLNPMAEEFVPPSLAKTN 192
Q SNG G F RD +R+L++L SKLNPMAEEFVPPSLA
Sbjct: 61 QKIPQFQQKAGSNGVAKIQMVGSFGRDREDGGDIRDLEDLLSKLNPMAEEFVPPSLA--- 117
Query: 193 NNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQRE 252
N HG + + NN ++ N GN N NA R++ ++ Q KRR+NSRTS+AQRE
Sbjct: 118 -NGHGWSAGAAFGYTNNFVLQANF----GNANGNAGRRKRNNYNQ-KRRINSRTSMAQRE 171
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
E+I+RTVYVSDIDQQVTEE LAALF+ CGQVVDCRICGDPNSVLRFAF+EFTDE EGARA
Sbjct: 172 EVIKRTVYVSDIDQQVTEEDLAALFINCGQVVDCRICGDPNSVLRFAFVEFTDE-EGARA 230
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
AL+LAGTMLG+YPVRVLPSKTAIAPVNPTFLPR+EDEREMCARTIYCTNIDKKVTQA+VK
Sbjct: 231 ALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVTQAEVK 290
Query: 373 LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 432
LFFES+CGEV+RLRLLGDYHHSTRIAFVEFVMAESAIAALNCSG +LGSLPIRVSPSKTP
Sbjct: 291 LFFESICGEVHRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGAILGSLPIRVSPSKTP 350
Query: 433 VRPRAPRLPMH 443
VRPRAPR +H
Sbjct: 351 VRPRAPRPALH 361
>gi|79325059|ref|NP_001031614.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
gi|332657508|gb|AEE82908.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
Length = 326
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/338 (70%), Positives = 262/338 (77%), Gaps = 39/338 (11%)
Query: 106 MAVVESASQDSAVSSAGSIP-------------ASNGQDHPKQNGGTMVMPLDQGLYNQ- 151
MAV+ES ++ V + G I AS+ DH GG G++++
Sbjct: 1 MAVIESVGANTTVEAGGLISPSPPSSVTSQESGASSNNDH----GG-------NGIHDEI 49
Query: 152 --NNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFA-N 208
+ RS+GG FKRDMREL EL SKLNPMA+EF+PPSL K VNGFNGGFFA N
Sbjct: 50 GVHVARSDGGESFKRDMRELHELLSKLNPMAKEFIPPSLTKPV-----VNGFNGGFFAVN 104
Query: 209 NSLIFNNHNARNGNVNANAAVRRKKSFGQ-GKRRMNSRTSLAQREEIIRRTVYVSDIDQQ 267
N + A N VN + + RRKKSFGQ GKRRMN RTSLAQREEIIRRTVYVSDIDQQ
Sbjct: 105 NGFV----AAGNFPVNEDGSFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQ 160
Query: 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR 327
VTEEQLA LF+G GQVVDCRICGDPNSVLRFAFIEFTDE GAR ALNL+GTMLGFYPV+
Sbjct: 161 VTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDEV-GARTALNLSGTMLGFYPVK 219
Query: 328 VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 387
V+PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK+TQ D+KLFFESVCGEVYRLRL
Sbjct: 220 VMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRL 279
Query: 388 LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 425
LGDYHH TRI FVEFVMAESAIAALNCSGV+LGSLPIR
Sbjct: 280 LGDYHHPTRIGFVEFVMAESAIAALNCSGVLLGSLPIR 317
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 344 PRTE--DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVE 401
PRT E+ RT+Y ++ID++VT+ + F G+V R+ GD + R AF+E
Sbjct: 137 PRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGF-GQVVDCRICGDPNSVLRFAFIE 195
Query: 402 FVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAP 438
F A ALN SG +LG P++V PSKT + P P
Sbjct: 196 FTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNP 232
>gi|79319100|ref|NP_001031131.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
gi|332193409|gb|AEE31530.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
Length = 406
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/323 (73%), Positives = 255/323 (78%), Gaps = 21/323 (6%)
Query: 113 SQDSAVSSAGSIPASNGQDHPKQNGGTMVMPLDQGLYNQ---NNQRSNG---GGDFKRDM 166
SQDS VSS + Q+H + V+ DQGLY++ + RS+G G FKRDM
Sbjct: 33 SQDSGVSS-------DDQNHHSRID--QVLRHDQGLYSKIGSHVARSDGVDGGESFKRDM 83
Query: 167 RELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFN--GGFFANNSLIFNNHNARNGNVN 224
RELQELFSKLNPMAEEFVPPSL K N F G FF NN G N
Sbjct: 84 RELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGF---AGTGNGGYGN 140
Query: 225 ANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV 284
N RRKKSFGQGKRRMN+RTS+AQRE++IRRTVYVSD+DQQVTEEQLA LFV CGQVV
Sbjct: 141 ENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVV 200
Query: 285 DCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLP 344
DCRICGDPNSVLRFAFIEFTDE EGA ALNL+GTMLGFYPV+VLPSKTAIAPVNPTFLP
Sbjct: 201 DCRICGDPNSVLRFAFIEFTDE-EGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLP 259
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
RTEDEREMCARTIYCTNIDKKVTQ+DVK+FFES CGEVYRLRLLGDY HSTRIAFVEFVM
Sbjct: 260 RTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVM 319
Query: 405 AESAIAALNCSGVVLGSLPIRVS 427
AESAIAALNCSGVVLGSLPIR S
Sbjct: 320 AESAIAALNCSGVVLGSLPIRSS 342
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y +++D++VT+ + F S CG+V R+ GD + R AF+EF E A+ ALN
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNL 231
Query: 415 SGVVLGSLPIRVSPSKTPVRPRAP 438
SG +LG P++V PSKT + P P
Sbjct: 232 SGTMLGFYPVKVLPSKTAIAPVNP 255
>gi|255582539|ref|XP_002532053.1| RNA-binding protein, putative [Ricinus communis]
gi|223528275|gb|EEF30325.1| RNA-binding protein, putative [Ricinus communis]
Length = 385
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/279 (78%), Positives = 236/279 (84%), Gaps = 10/279 (3%)
Query: 165 DMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVN 224
DM +L E+ S LNPMA+EFVPPSL NNHG G NG + NN N GN
Sbjct: 117 DMSDLVEILSNLNPMAKEFVPPSLV----NNHGYLG-NGFGYTNNFPAQTNP----GNAI 167
Query: 225 ANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV 284
N R+K SF QG+RRMN+RTS+AQRE++IRRTVYVSDIDQQVTEEQLA LFV CGQVV
Sbjct: 168 GNTIKRKKNSFNQGRRRMNTRTSMAQREDVIRRTVYVSDIDQQVTEEQLAGLFVHCGQVV 227
Query: 285 DCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLP 344
DCRICGDPNSVLRFAFIEFTDE EGARAALNL+GT+LGFYP+RVLPSKTAIAPVNPTFLP
Sbjct: 228 DCRICGDPNSVLRFAFIEFTDE-EGARAALNLSGTVLGFYPLRVLPSKTAIAPVNPTFLP 286
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
R+EDEREMCART+YCTNIDKKVTQADV+LFFES CGEV RLRLLGDYHHSTRIAFVEF +
Sbjct: 287 RSEDEREMCARTVYCTNIDKKVTQADVRLFFESFCGEVQRLRLLGDYHHSTRIAFVEFTV 346
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
AESAI ALNCSG VLGSLPIRVSPSKTPVRPR PR P+H
Sbjct: 347 AESAILALNCSGAVLGSLPIRVSPSKTPVRPRIPRSPLH 385
>gi|356516140|ref|XP_003526754.1| PREDICTED: uncharacterized protein LOC100799585 [Glycine max]
Length = 378
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/325 (68%), Positives = 254/325 (78%), Gaps = 8/325 (2%)
Query: 122 GSIPASNGQ-DHPKQNGGTMVMPLDQGLYNQNNQRS--NGGGDFKRDMRELQELFSKLNP 178
G++P N ++ Q G ++ Y N S N G FKRDMR+L+EL SKLNP
Sbjct: 59 GTMPVPNSNYNYNAQMGQMHANGVNNDGYGMNGVMSGENEGESFKRDMRDLEELLSKLNP 118
Query: 179 MAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQG 238
MAEEFVPPSL+ T+ G G + NN ++ NN GN N RRK + QG
Sbjct: 119 MAEEFVPPSLSNTHGYLAGPGAGAGFGYPNNFILLNNF----GNANGQTNRRRKNGYNQG 174
Query: 239 KRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF 298
KRR+N + + +REE+ RRTVYVSDIDQ VTEEQLAALF+ CGQVVDCR+CGDPNS+LRF
Sbjct: 175 KRRVNHKMDMEKREEMTRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRF 234
Query: 299 AFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIY 358
AFIEFTDE EGARAALNL+GTMLG+YP+RVLPSKTAIAPVNPTFLPR+EDEREMC+RTIY
Sbjct: 235 AFIEFTDE-EGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIY 293
Query: 359 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVV 418
CTNIDKK+TQADVK FFES+CGEV RLRLLGDYHHSTRIAFVEF +AESAIAAL+CSGV+
Sbjct: 294 CTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAALSCSGVI 353
Query: 419 LGSLPIRVSPSKTPVRPRAPRLPMH 443
LGSLPIRVSPSKTPVR RAPR MH
Sbjct: 354 LGSLPIRVSPSKTPVRSRAPRPTMH 378
>gi|297851722|ref|XP_002893742.1| hypothetical protein ARALYDRAFT_473465 [Arabidopsis lyrata subsp.
lyrata]
gi|297339584|gb|EFH70001.1| hypothetical protein ARALYDRAFT_473465 [Arabidopsis lyrata subsp.
lyrata]
Length = 409
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/323 (71%), Positives = 247/323 (76%), Gaps = 10/323 (3%)
Query: 113 SQDSAVSSAGSIPASNGQDHPKQNGGTMVMPLDQGLYNQNNQRSNGGGDFKRDMRELQEL 172
SQDS VSS S + + G + + G + + +GG FKRDMRELQEL
Sbjct: 33 SQDSGVSSDDQNHHSRIDQVLRHDQGDVGLYSKIGSHVARSDGVDGGESFKRDMRELQEL 92
Query: 173 FSKLNPMAEEFVPPSLAKTNNNNHGVNGFN------GGFFANNSLIFNNHNARNGNVNAN 226
FSKLNPMAEEFVPPSL K N G FF NN + G N N
Sbjct: 93 FSKLNPMAEEFVPPSLTKQGGNGGLNGVNGGFFTSAGSFFRNNGF---SGTGNGGYGNEN 149
Query: 227 AAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDC 286
RRKKSFGQGKRRMN+RTS+AQRE++IRRTVYVSD+DQQVTEEQLA LFV CGQVVDC
Sbjct: 150 GGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDC 209
Query: 287 RICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT 346
RICGDPNSVLRFAFIEFTDE EGA ALNL+GTMLGFYPV+VLPSKTAIAPVNPTFLPRT
Sbjct: 210 RICGDPNSVLRFAFIEFTDE-EGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRT 268
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAE 406
EDEREMCARTIYCTNIDKKVTQ+DVK+FFES CGEVYRLRLLGDY HSTRIAFVEFVMAE
Sbjct: 269 EDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAE 328
Query: 407 SAIAALNCSGVVLGSLPIRVSPS 429
SAIAALNCSGVVLGSLPIR S
Sbjct: 329 SAIAALNCSGVVLGSLPIRSGES 351
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y +++D++VT+ + F S CG+V R+ GD + R AF+EF E A+ ALN
Sbjct: 180 RTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNL 238
Query: 415 SGVVLGSLPIRVSPSKTPVRPRAP 438
SG +LG P++V PSKT + P P
Sbjct: 239 SGTMLGFYPVKVLPSKTAIAPVNP 262
>gi|356516142|ref|XP_003526755.1| PREDICTED: uncharacterized protein LOC100800126 [Glycine max]
Length = 369
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/326 (70%), Positives = 262/326 (80%), Gaps = 17/326 (5%)
Query: 122 GSIPASNGQDHPKQNGGTMVMPLDQGLYNQNNQRS--NGGGDFKRDMRELQELFSKLNPM 179
G++P NG K G ++ Y N S NGG FKRDMR+L+EL SKLNPM
Sbjct: 57 GTMPVPNGNFSYKHANG-----VNNDGYGMNGVMSEENGGESFKRDMRDLEELLSKLNPM 111
Query: 180 AEEFVPPSLAKTNNNNHGV-NGFNGGF-FANNSLIFNNHNARNGNVNANAAVRRKKSFGQ 237
AEEFVPPSLA N HG+ G N GF + NN ++ NN+ NG N RRK +
Sbjct: 112 AEEFVPPSLA----NTHGLLAGPNAGFGYTNNFILPNNYGNTNGQTNNR---RRKNGYNP 164
Query: 238 GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR 297
GKRRMN + + +REE+IRRTVYVSDIDQ VTEEQLAALF+ CGQVVDCR+CGDPNS+LR
Sbjct: 165 GKRRMNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILR 224
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTI 357
FAFIEFTD+ EGARAAL+L+GTMLG+YP+RVLPSKTAIAPVNPTFLPR+EDEREMC+RTI
Sbjct: 225 FAFIEFTDD-EGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTI 283
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGV 417
YCTNIDKK+TQADVK FFES+CGEV+RLRLLGDYHHSTRIAFVEF +AESAIAAL+CSGV
Sbjct: 284 YCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGV 343
Query: 418 VLGSLPIRVSPSKTPVRPRAPRLPMH 443
+LGSLPIRVSPSKTPVRPRAPR PMH
Sbjct: 344 ILGSLPIRVSPSKTPVRPRAPRPPMH 369
>gi|356509167|ref|XP_003523323.1| PREDICTED: uncharacterized protein LOC100787572 [Glycine max]
Length = 369
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/289 (76%), Positives = 249/289 (86%), Gaps = 10/289 (3%)
Query: 157 NGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHG-VNGFNGGF-FANNSLIFN 214
NGG FKRDMR+L+EL SKLNPMAEEFVPPSLA N HG + G N GF + NN ++
Sbjct: 89 NGGESFKRDMRDLEELLSKLNPMAEEFVPPSLA----NTHGFLAGPNAGFGYTNNIILPT 144
Query: 215 NHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLA 274
N+ NG N RRK + GKRRMN++ + +REE+IRRTVYVSDIDQ VTEEQLA
Sbjct: 145 NYGNTNGQTNNR---RRKNGYNPGKRRMNNKMDMEKREEMIRRTVYVSDIDQLVTEEQLA 201
Query: 275 ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTA 334
ALF+ CGQVVDCR+CGDPNS+LRFAF+EFTDE EGARAAL+L+GTMLG+YP+RVLPSKTA
Sbjct: 202 ALFLNCGQVVDCRVCGDPNSILRFAFVEFTDE-EGARAALSLSGTMLGYYPLRVLPSKTA 260
Query: 335 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHS 394
IAPVNPTFLPR+EDEREMC+RTIYCTNIDKK+TQADVK FFES+CGEV+RLRLLGDYHHS
Sbjct: 261 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHS 320
Query: 395 TRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
TRIAFVEF +AESAIAAL+CSGV+LGSLPIRVSPSKTPVRPRAPR PMH
Sbjct: 321 TRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRPPMH 369
>gi|357464159|ref|XP_003602361.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355491409|gb|AES72612.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 384
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/327 (66%), Positives = 252/327 (77%), Gaps = 22/327 (6%)
Query: 133 PKQNGGTMVMPLDQ----GLYNQ---NNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVP 185
P N G + + Q G+ NQ + NGG FKR+MR+L+EL SKLNPMAEEFVP
Sbjct: 64 PNGNHGFIAHQMSQMHGNGVQNQHLVDGYGGNGGESFKREMRDLEELLSKLNPMAEEFVP 123
Query: 186 PSLAKTNNNNHGVNGFNGGF-FANNSLIFNNHNARN--------GNVNANAAVRRKKSFG 236
PSL TN + + G N GF + NN+ + N+ G +N RRK +
Sbjct: 124 PSLV-TNYHGYLAAGPNAGFGYPNNNFMLQNNFGNANANATANNGQINR----RRKNGYN 178
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVL 296
KRR+ + + +REE+IRRTVYVSDIDQQVTEEQLAALF+ CGQVVDCR+CGDPNS+L
Sbjct: 179 NAKRRVYHKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSIL 238
Query: 297 RFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART 356
RFAF+EFTDE GARAALNL+GTMLG+YP+RVLPSKTAIAPVNPTFLPR+EDEREMC RT
Sbjct: 239 RFAFVEFTDEV-GARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCTRT 297
Query: 357 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSG 416
IYCTN+DKK+TQADVK FFES+CGEV RLRLLGDYHHSTRIAFVEF +AESAIAAL+CSG
Sbjct: 298 IYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFAVAESAIAALSCSG 357
Query: 417 VVLGSLPIRVSPSKTPVRPRAPRLPMH 443
VVLGSLPIRVSPSKTPVR RA R PMH
Sbjct: 358 VVLGSLPIRVSPSKTPVRARAVRTPMH 384
>gi|449438861|ref|XP_004137206.1| PREDICTED: uncharacterized protein LOC101204595 [Cucumis sativus]
Length = 403
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/297 (72%), Positives = 241/297 (81%), Gaps = 21/297 (7%)
Query: 153 NQRSNG------GGD-FKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGF 205
NQR NG GGD FKRDMR+L+EL SKLNPMAEEFVPPSLAK + G+
Sbjct: 114 NQRPNGVINGADGGDTFKRDMRDLEELLSKLNPMAEEFVPPSLAKNFS----------GY 163
Query: 206 FANNSLIFNNH---NARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVS 262
F L + N + N N + R+K F QG+RRMN++ + +R+E+ RRTVYVS
Sbjct: 164 FTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKMNAVKRDEMTRRTVYVS 223
Query: 263 DIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLG 322
DIDQQVTEE LA +F CG+VVDCRICGDPNS+L FAFIEFTDE EGARA+LNL+GT+LG
Sbjct: 224 DIDQQVTEELLATVFASCGEVVDCRICGDPNSILHFAFIEFTDE-EGARASLNLSGTVLG 282
Query: 323 FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEV 382
FYPVRVLPSKTAIAPVNP FLPR++DEREMC+RTIYCTNIDKKVTQA+VKLFFES+CGEV
Sbjct: 283 FYPVRVLPSKTAIAPVNPDFLPRSDDEREMCSRTIYCTNIDKKVTQAEVKLFFESLCGEV 342
Query: 383 YRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
RLRLLGDYHHSTRIAFVEF MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPR+PR
Sbjct: 343 QRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPR 399
>gi|449483221|ref|XP_004156526.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Cucumis
sativus]
Length = 316
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/297 (72%), Positives = 241/297 (81%), Gaps = 21/297 (7%)
Query: 153 NQRSNG------GGD-FKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGF 205
NQR NG GGD FKRDMR+L+EL SKLNPMAEEFVPPSLAK + G+
Sbjct: 27 NQRPNGVINGADGGDTFKRDMRDLEELLSKLNPMAEEFVPPSLAKNFS----------GY 76
Query: 206 FANNSLIFNNH---NARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVS 262
F L + N + N N + R+K F QG+RRMN++ + +R+E+ RRTVYVS
Sbjct: 77 FTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKMNAVKRDEMTRRTVYVS 136
Query: 263 DIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLG 322
DIDQQVTEE LA +F CG+VVDCRICGDPNS+L FAFIEFTDE EGARA+LNL+GT+LG
Sbjct: 137 DIDQQVTEELLATVFASCGEVVDCRICGDPNSILHFAFIEFTDE-EGARASLNLSGTVLG 195
Query: 323 FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEV 382
FYPVRVLPSKTAIAPVNP FLPR++DEREMC+RTIYCTNIDKKVTQA+VKLFFES+CGEV
Sbjct: 196 FYPVRVLPSKTAIAPVNPDFLPRSDDEREMCSRTIYCTNIDKKVTQAEVKLFFESLCGEV 255
Query: 383 YRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
RLRLLGDYHHSTRIAFVEF MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPR+PR
Sbjct: 256 QRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPR 312
>gi|50725622|dbj|BAD33089.1| putative RNA-binding protein RBP37 [Oryza sativa Japonica Group]
gi|182375457|dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group]
gi|215736921|dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222639804|gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza sativa Japonica Group]
Length = 302
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/288 (73%), Positives = 234/288 (81%), Gaps = 6/288 (2%)
Query: 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHG---VNGFNGGFFANNSLIFNN 215
G +R+MR+L++L SKLNPMAEEFVPPSLA + + + F A + L
Sbjct: 18 GDAGEREMRDLEDLLSKLNPMAEEFVPPSLAAASPTAYAYYPTPTPSHVFPAVDGL--AG 75
Query: 216 HNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAA 275
R GKRRMNSRTS+AQR+E+IRRTVYVSDID QVTEEQLAA
Sbjct: 76 PRPRKKGGGGGGGGGFGGQGHAGKRRMNSRTSMAQRDEVIRRTVYVSDIDHQVTEEQLAA 135
Query: 276 LFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
LF+ CGQVVDCR+CGDPNSVLRFAFIEFTDE E ARAALNL+GT+LG+YPVRVLPSKTAI
Sbjct: 136 LFINCGQVVDCRMCGDPNSVLRFAFIEFTDE-ESARAALNLSGTVLGYYPVRVLPSKTAI 194
Query: 336 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHST 395
APVNPTFLPR++DEREMCARTIYCTNIDKKV+QADVKLFFES+CGEVYRLRLLGDYHHST
Sbjct: 195 APVNPTFLPRSDDEREMCARTIYCTNIDKKVSQADVKLFFESICGEVYRLRLLGDYHHST 254
Query: 396 RIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
RIAFVEFVMAESA AALNCSGV+LGSLPIRVSPSKTPVRPRAPR MH
Sbjct: 255 RIAFVEFVMAESATAALNCSGVILGSLPIRVSPSKTPVRPRAPRQLMH 302
>gi|218200388|gb|EEC82815.1| hypothetical protein OsI_27601 [Oryza sativa Indica Group]
Length = 277
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/285 (73%), Positives = 232/285 (81%), Gaps = 25/285 (8%)
Query: 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNA 218
G +R+MR+L++L SKLNPMAEEFVPPSLA + + S +F +A
Sbjct: 18 GDAGEREMRDLEDLLSKLNPMAEEFVPPSLAAASPTAYAYYPT-----PTPSHVFPAGHA 72
Query: 219 RNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFV 278
GKRRMN RTS+AQR+E+IRRTVYVSDID QVTEEQLAALF+
Sbjct: 73 -------------------GKRRMNRRTSMAQRDEVIRRTVYVSDIDHQVTEEQLAALFI 113
Query: 279 GCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPV 338
CGQVVDCR+CGDPNSVLRFAFIEFTDE E ARAALNL+GT+LG+YPVRVLPSKTAIAPV
Sbjct: 114 NCGQVVDCRMCGDPNSVLRFAFIEFTDE-ESARAALNLSGTVLGYYPVRVLPSKTAIAPV 172
Query: 339 NPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIA 398
NPTFLPR++DEREMCARTIYCTNIDKKV+QADVKLFFES+CGEVYRLRLLGDYHHSTRIA
Sbjct: 173 NPTFLPRSDDEREMCARTIYCTNIDKKVSQADVKLFFESICGEVYRLRLLGDYHHSTRIA 232
Query: 399 FVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
FVEFVMAESA AALNCSGV+LGSLPIRVSPSKTPVRPRAPR MH
Sbjct: 233 FVEFVMAESATAALNCSGVILGSLPIRVSPSKTPVRPRAPRQLMH 277
>gi|255646437|gb|ACU23697.1| unknown [Glycine max]
Length = 291
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/292 (72%), Positives = 237/292 (81%), Gaps = 15/292 (5%)
Query: 158 GGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGV------NGFNGGFFANNSL 211
GG FKRDMR+L+EL SKLNPMAEEFVPPSL N HG G + NN +
Sbjct: 9 GGESFKRDMRDLEELLSKLNPMAEEFVPPSLT----NTHGYLPGPGAGAGAGFGYPNNFI 64
Query: 212 IFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEE 271
+ NN NG N RRK + GKRR+N + + +REE+IRRTVYVSDIDQ VTEE
Sbjct: 65 LLNNFGDANGQTNR----RRKNGYNHGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEE 120
Query: 272 QLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331
QLA LF+ CGQVVD R+CGDPNS+LRFAF+EFTDE +GARAALNL+GTMLG+YP+RVLPS
Sbjct: 121 QLAGLFLNCGQVVDYRVCGDPNSILRFAFVEFTDE-DGARAALNLSGTMLGYYPLRVLPS 179
Query: 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY 391
KTAIAPVNPTFLPR+EDEREMC+RTIYCTNIDKK+TQADVK FFES+CGEV RLRLLGDY
Sbjct: 180 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDY 239
Query: 392 HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
HHSTRIAFVEF +AESAIAAL+CSGV+LGSLPIRVSPSKTPVR RAPR MH
Sbjct: 240 HHSTRIAFVEFTVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRPSMH 291
>gi|357139501|ref|XP_003571320.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Brachypodium distachyon]
Length = 328
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/306 (70%), Positives = 240/306 (78%), Gaps = 30/306 (9%)
Query: 163 KRDMRELQELFSKLNPMAEEFVPPSLAKTNNN-------------NHGVNGFNGGFFANN 209
+R+MR+L+EL SKLNPMAEEFVPPSLA + N G GGF A+
Sbjct: 28 EREMRDLEELLSKLNPMAEEFVPPSLATAPHPTAAGYAAAAGYYPNPSAGGGRGGFVASP 87
Query: 210 SLIFNNHNARNGNVNANAAVRRKKSFGQ------------GKRRMNSRTSLAQREEIIRR 257
+ H G A A R +K FG GKRR+NSRTS AQR+E+IRR
Sbjct: 88 A----AHRGVVGFPAAPADGRGRKKFGGYAGAGPGGYPQGGKRRVNSRTSQAQRDEVIRR 143
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLA 317
TVYVSDID QVTEEQLAALF+ GQVVDCR+CGDPNSVLRFAFIEFTDE EGARAAL L+
Sbjct: 144 TVYVSDIDHQVTEEQLAALFINVGQVVDCRMCGDPNSVLRFAFIEFTDE-EGARAALTLS 202
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 377
GT+LG+YPVRVLPSKTAIAPVNPTFLPR++DEREMCARTIYCTNID+KV+QADVKLFFES
Sbjct: 203 GTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDRKVSQADVKLFFES 262
Query: 378 VCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRA 437
+CGEVYRLRLLGDY H+TRIAFVEFVMAESA AALNCSGV+LGSLPIRVSPSKTPVRPRA
Sbjct: 263 ICGEVYRLRLLGDYQHNTRIAFVEFVMAESATAALNCSGVILGSLPIRVSPSKTPVRPRA 322
Query: 438 PRLPMH 443
PR MH
Sbjct: 323 PRPLMH 328
>gi|388492572|gb|AFK34352.1| unknown [Medicago truncatula]
Length = 376
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/288 (71%), Positives = 240/288 (83%), Gaps = 10/288 (3%)
Query: 157 NGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGF-FANNSLIFNN 215
NGG FKR+MR+L+EL SKLNPMAEEFVPPSL TNN+ + G GF + NN ++ NN
Sbjct: 96 NGGESFKREMRDLEELLSKLNPMAEEFVPPSL--TNNHGYLAAGPAAGFGYPNNFILLNN 153
Query: 216 HNARNGNVNANAAVRRKKSFG-QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLA 274
+ NG N RRK + GKRR N + + +REE+IRRTVY SDIDQ VTEEQLA
Sbjct: 154 YANANGQTNR----RRKNGYTTNGKRRANHKVDMEKREEMIRRTVYASDIDQLVTEEQLA 209
Query: 275 ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTA 334
+LF+ CGQVVDCR+C DPNS+LRFAFIEFTDE E ARAA++L+GTMLG+YP+RVLPSKTA
Sbjct: 210 SLFLNCGQVVDCRVCRDPNSILRFAFIEFTDE-ESARAAVSLSGTMLGYYPLRVLPSKTA 268
Query: 335 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHS 394
IAPVNPTFLPR+EDEREMC+RTIYCTNIDKK+TQADVK FFES+CGEV+RLRLLGDY HS
Sbjct: 269 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHS 328
Query: 395 TRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPR-APRLP 441
TRIAFVEF +AESAIAAL+CSGV+LG+LPIRVSPSKTPVR R +PR P
Sbjct: 329 TRIAFVEFAVAESAIAALSCSGVILGALPIRVSPSKTPVRARSSPRSP 376
>gi|168046548|ref|XP_001775735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672887|gb|EDQ59418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 256
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/279 (73%), Positives = 229/279 (82%), Gaps = 24/279 (8%)
Query: 166 MRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNA 225
MREL++L +KLNP+A+EFVPPS A + A + ++
Sbjct: 1 MRELEDLLTKLNPLAKEFVPPSHAD----------------------LASTTAPSSVASS 38
Query: 226 NAAVRRKKSFGQ-GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV 284
R+K F Q KRR+NSRTS AQRE+ IRRTVYVSDIDQQVTEEQLAALF+ CGQVV
Sbjct: 39 KGQPRKKNGFNQVNKRRVNSRTSRAQREDSIRRTVYVSDIDQQVTEEQLAALFITCGQVV 98
Query: 285 DCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLP 344
DCR+CGDPNSVLRFAF+EFTDE EGARAAL+LAGTMLG+YPVRVLPSKTAI PVNPTFLP
Sbjct: 99 DCRVCGDPNSVLRFAFVEFTDE-EGARAALSLAGTMLGYYPVRVLPSKTAIVPVNPTFLP 157
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
R+EDEREMCARTIYCTNIDKKV+QADVKLFFES+CGEV RLRLLGDYHHSTRIAFVEFVM
Sbjct: 158 RSEDEREMCARTIYCTNIDKKVSQADVKLFFESLCGEVARLRLLGDYHHSTRIAFVEFVM 217
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
AESA+AALNCSG +LGSLPIRVSPSKTPVRPR+PR P+H
Sbjct: 218 AESAMAALNCSGAILGSLPIRVSPSKTPVRPRSPRSPLH 256
>gi|147804944|emb|CAN62612.1| hypothetical protein VITISV_033249 [Vitis vinifera]
Length = 369
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/256 (80%), Positives = 220/256 (85%), Gaps = 19/256 (7%)
Query: 154 QRSNGG-----GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFAN 208
RSNGG GD DMRELQELFSKLNPMAEEFVPPSLA NG NGGF++N
Sbjct: 118 HRSNGGXLQRNGDSGVDMRELQELFSKLNPMAEEFVPPSLAN--------NGLNGGFYSN 169
Query: 209 NSLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQV 268
S NN RNG VN R+K +FGQGKRRMNSRTS+AQREEIIRRTVYVSDIDQQV
Sbjct: 170 GSETHNN--TRNGQVNGR---RKKNNFGQGKRRMNSRTSMAQREEIIRRTVYVSDIDQQV 224
Query: 269 TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
TEE+LAALF+ CGQVVDCR+CGDPNSVLRFAF+EFTDE EGARAAL+LAGTMLG+YPVRV
Sbjct: 225 TEEKLAALFITCGQVVDCRVCGDPNSVLRFAFVEFTDE-EGARAALSLAGTMLGYYPVRV 283
Query: 329 LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL 388
LPSKTAIAPVNPTFLPR EDEREMCARTIYCTNIDKKV+QADVKLFFESVCGEVYRLRLL
Sbjct: 284 LPSKTAIAPVNPTFLPRNEDEREMCARTIYCTNIDKKVSQADVKLFFESVCGEVYRLRLL 343
Query: 389 GDYHHSTRIAFVEFVM 404
GDYHHSTRIAFVEF+M
Sbjct: 344 GDYHHSTRIAFVEFIM 359
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
E+ RT+Y ++ID++VT+ + F + CG+V R+ GD + R AFVEF E A A
Sbjct: 209 EIIRRTVYVSDIDQQVTEEKLAALFIT-CGQVVDCRVCGDPNSVLRFAFVEFTDEEGARA 267
Query: 411 ALNCSGVVLGSLPIRVSPSKTPVRPRAP 438
AL+ +G +LG P+RV PSKT + P P
Sbjct: 268 ALSLAGTMLGYYPVRVLPSKTAIAPVNP 295
>gi|357464151|ref|XP_003602357.1| Splicing factor, arginine/serine-rich [Medicago truncatula]
gi|355491405|gb|AES72608.1| Splicing factor, arginine/serine-rich [Medicago truncatula]
Length = 384
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/296 (70%), Positives = 242/296 (81%), Gaps = 18/296 (6%)
Query: 157 NGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGF-FANNSLIFNN 215
NGG FKR+MR+L+EL SKLNPMAEEFVPPSL TNN+ + G GF + NN ++ NN
Sbjct: 96 NGGESFKREMRDLEELLSKLNPMAEEFVPPSL--TNNHGYLAAGPAAGFGYPNNFILLNN 153
Query: 216 HNARNGNVNANAAVRRKKSFG-QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLA 274
+ NG N RRK + GKRR N + + +REE+IRRTVYVSDIDQ VTEEQLA
Sbjct: 154 YANANGQTNR----RRKNGYTTNGKRRANHKVDMEKREEMIRRTVYVSDIDQLVTEEQLA 209
Query: 275 ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTA 334
+LF+ CGQVVDCR+CGDPNS+LRFAFIEFTDE E ARAA++L+GTMLG+YP+RVLPSKTA
Sbjct: 210 SLFLNCGQVVDCRVCGDPNSILRFAFIEFTDE-ESARAAVSLSGTMLGYYPLRVLPSKTA 268
Query: 335 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHS 394
IAPVNPTFLPR+EDEREMC+RTIYCTNIDKK+TQADVK FFES+CGEV+RLRLLGDY HS
Sbjct: 269 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHS 328
Query: 395 TRIAFVEFVM--------AESAIAALNCSGVVLGSLPIRVSPSKTPVRPR-APRLP 441
TRIAFVEF + AESAIAAL+CSGV+LG+LPIRVSPSKTPVR R +PR P
Sbjct: 329 TRIAFVEFAVIFFASFFQAESAIAALSCSGVILGALPIRVSPSKTPVRARSSPRSP 384
>gi|224028543|gb|ACN33347.1| unknown [Zea mays]
gi|413941691|gb|AFW74340.1| CID11 [Zea mays]
Length = 328
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/298 (71%), Positives = 239/298 (80%), Gaps = 19/298 (6%)
Query: 163 KRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHG-VNGFNGGFFANNSLIFNNHNARNG 221
+R+MR+L++L SKLNPMAEEFVPPSLA ++ GF+ + F + +G
Sbjct: 33 EREMRDLEDLLSKLNPMAEEFVPPSLASPAALTPAPLSPAAYGFYPAGAG-FAVASPGHG 91
Query: 222 NVNANAAVRRKKSF-------------GQG---KRRMNSRTSLAQREEIIRRTVYVSDID 265
V AV + G G +RR NSRTS+AQR+EIIRRTVYVSDID
Sbjct: 92 GVVGFPAVADAHAARGRKKGGAGGGFSGHGHPARRRTNSRTSMAQRDEIIRRTVYVSDID 151
Query: 266 QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYP 325
QVTEE LAALF+ CGQVVDCR+CGDPNSVLRFAFIEFTDE EGARAALNL+GT+LG+YP
Sbjct: 152 HQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDE-EGARAALNLSGTVLGYYP 210
Query: 326 VRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL 385
VRVLPSKTAIAPVNPTFLPR++DEREMCARTIYCTNIDKKVTQAD+KLFFES+CGEV+RL
Sbjct: 211 VRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICGEVFRL 270
Query: 386 RLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
RLLGDYHHSTRIAFVEFVMAESA AALNCSGV+LGSLPIRVSPSKTPVRPRAPR MH
Sbjct: 271 RLLGDYHHSTRIAFVEFVMAESATAALNCSGVILGSLPIRVSPSKTPVRPRAPRQLMH 328
>gi|226529745|ref|NP_001150079.1| CID11 [Zea mays]
gi|195636508|gb|ACG37722.1| CID11 [Zea mays]
Length = 328
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/298 (70%), Positives = 237/298 (79%), Gaps = 19/298 (6%)
Query: 163 KRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHG-VNGFNGGFFANNSLIFNNHNARNG 221
+R+MR+L++L SKLNPMAEEFVPPSLA ++ GF+ + F + +G
Sbjct: 33 EREMRDLEDLLSKLNPMAEEFVPPSLASPAALTPAPLSPAAYGFYPAGAG-FAVASPGHG 91
Query: 222 NVNANAAVRRKKSFGQG----------------KRRMNSRTSLAQREEIIRRTVYVSDID 265
V AV + +RR NSRTS+AQR+EIIRRTVYVSDID
Sbjct: 92 GVVGFPAVADAHAARGRKKGGAGGGFSGHGHPGRRRTNSRTSMAQRDEIIRRTVYVSDID 151
Query: 266 QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYP 325
QVTEE LAALF+ CGQVVDCR+CGDPNSVLRFAFIEFTDE EGARAALNL+GT+LG+YP
Sbjct: 152 HQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDE-EGARAALNLSGTVLGYYP 210
Query: 326 VRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL 385
VRVLPSKTAIAPVNPTFLPR++DEREMCARTIYCTNIDKKVTQAD+KLFFES+CGEV+RL
Sbjct: 211 VRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICGEVFRL 270
Query: 386 RLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
RLLGDYHHSTRIAFVEFVMAESA AALNCSGV+LGSLPIRVSPSKTPVRPRAPR MH
Sbjct: 271 RLLGDYHHSTRIAFVEFVMAESATAALNCSGVILGSLPIRVSPSKTPVRPRAPRQLMH 328
>gi|242080315|ref|XP_002444926.1| hypothetical protein SORBIDRAFT_07g001560 [Sorghum bicolor]
gi|241941276|gb|EES14421.1| hypothetical protein SORBIDRAFT_07g001560 [Sorghum bicolor]
Length = 348
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/312 (68%), Positives = 235/312 (75%), Gaps = 32/312 (10%)
Query: 163 KRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNG------------GFF--AN 208
+R+MR+L++L SKLNPMAEEFVPPSL G G GF+ AN
Sbjct: 38 EREMRDLEDLLSKLNPMAEEFVPPSLTSPVAVAVGAGPGPGPLTPAPLSPAAYGFYPAAN 97
Query: 209 NSLIFNNHNARNGNVN-----------------ANAAVRRKKSFGQGKRRMNSRTSLAQR 251
+ A G V A G+RR NSRTS+AQR
Sbjct: 98 AGFAVASPAAHRGVVGFPAAVADAAHAGRGRKKGGAGGGFGGHGHPGRRRTNSRTSMAQR 157
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
+E+IRRTVYVSDID QVTEE LAALF+ CGQVVDCR+CGDPNSVLRFAFIEFTDE EGAR
Sbjct: 158 DEVIRRTVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDE-EGAR 216
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AALNL+GT+LG+YPVRVLPSKTAIAPVNPTFLPR++DEREMCARTIYCTNIDKKVTQAD+
Sbjct: 217 AALNLSGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADL 276
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
KLFFES+CGEV+RLRLLGDYHHSTRIAFVEFVMAESA AALNCSGV+LGSLPIRVSPSKT
Sbjct: 277 KLFFESICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNCSGVILGSLPIRVSPSKT 336
Query: 432 PVRPRAPRLPMH 443
PVRPRAPR MH
Sbjct: 337 PVRPRAPRQLMH 348
>gi|326514404|dbj|BAJ96189.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 324
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/295 (70%), Positives = 229/295 (77%), Gaps = 12/295 (4%)
Query: 158 GGGDFKRDMRELQELFSKLNPMAEEFVPPSLAK----------TNNNNHGVNGFNGGFFA 207
GG +R+MR+L+EL SKLNPMAEEFVPPSLA N GF
Sbjct: 30 GGDAGEREMRDLEELLSKLNPMAEEFVPPSLAAHPMPPPPYAGYYPNGPPAAGFAPVASP 89
Query: 208 NNSLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQ 267
+ + A GKRR+NSRTS AQR+E+IRRTVYVSDID Q
Sbjct: 90 GHRGVVGFPAADGRGRKKFGGGYGGGYPHGGKRRVNSRTSQAQRDEVIRRTVYVSDIDHQ 149
Query: 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR 327
VTEEQLAALF+ GQVVDCR+CGDPNSVLRFAFIEFTDE EGARAAL L+GT+LG+YPVR
Sbjct: 150 VTEEQLAALFINVGQVVDCRMCGDPNSVLRFAFIEFTDE-EGARAALTLSGTVLGYYPVR 208
Query: 328 VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 387
VLPSKTAIAPVNPTFLPR++DEREMCARTIYCTNIDKKV+QADVKLFFES+CGEVYRLRL
Sbjct: 209 VLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQADVKLFFESICGEVYRLRL 268
Query: 388 LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPM 442
LGDY H+TRIAFVEFVMAESA AALNCSGV+LGSLPIRVSP KTPVRPRAPR PM
Sbjct: 269 LGDYQHNTRIAFVEFVMAESATAALNCSGVILGSLPIRVSPFKTPVRPRAPR-PM 322
>gi|224118386|ref|XP_002317806.1| predicted protein [Populus trichocarpa]
gi|222858479|gb|EEE96026.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/280 (75%), Positives = 237/280 (84%), Gaps = 11/280 (3%)
Query: 152 NNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSL 211
++QR+ G DM +L E+ SKLNPMAEEFVPPSLA N+ G G GF ANN L
Sbjct: 13 HHQRAKSNG--VNDMNDLVEMLSKLNPMAEEFVPPSLA----NHPGFFGNGFGFNANNFL 66
Query: 212 IFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEE 271
+ N+ NG N R+K S+ QG+RRMN+RTS+AQR+EII+RTVYVSDIDQQVTEE
Sbjct: 67 VQINNGIANGQTNR----RKKNSYNQGRRRMNNRTSMAQRDEIIKRTVYVSDIDQQVTEE 122
Query: 272 QLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331
QLA LF+ CGQVVDCRICGDPNSVLRFAF+EFTDE EGAR AL+L+GT+LGFYP+RVLPS
Sbjct: 123 QLAGLFIHCGQVVDCRICGDPNSVLRFAFVEFTDE-EGARTALSLSGTVLGFYPLRVLPS 181
Query: 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY 391
KTAIAPVNPTFLPR+EDEREMCART+YCTNIDKK+TQADV+LFFES CGEV+RLRLLGDY
Sbjct: 182 KTAIAPVNPTFLPRSEDEREMCARTVYCTNIDKKITQADVRLFFESFCGEVHRLRLLGDY 241
Query: 392 HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
HHSTRIAFVEF +AESAIAALNCSG VLGSLPIRVSPSKT
Sbjct: 242 HHSTRIAFVEFAVAESAIAALNCSGAVLGSLPIRVSPSKT 281
>gi|308081540|ref|NP_001182915.1| uncharacterized protein LOC100501201 [Zea mays]
gi|238008164|gb|ACR35117.1| unknown [Zea mays]
gi|413921443|gb|AFW61375.1| hypothetical protein ZEAMMB73_448284 [Zea mays]
Length = 342
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/302 (69%), Positives = 233/302 (77%), Gaps = 26/302 (8%)
Query: 163 KRDMRELQELFSKLNPMAEEFVPPSLAKTNNN---NHG----------VNGF---NGGFF 206
+R+MR+L++L SKLNPMAEEFVPPSLA + HG GF N GF
Sbjct: 37 EREMRDLEDLLSKLNPMAEEFVPPSLASPISGAGAGHGALTPAPLSPAAYGFYPVNAGFA 96
Query: 207 ANN---------SLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR 257
+ + + H R + G+RR NSRTS+AQR+E IRR
Sbjct: 97 VASPGHRGVVSFPAVADAHAGRGMKKDGAGGFGGHGHGHPGRRRTNSRTSMAQRDEAIRR 156
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLA 317
TVYVSDID QVTEE LAALF+ CGQVVDCR+CGDPNSVLRFAFIEFTDE EGARAALNL+
Sbjct: 157 TVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDE-EGARAALNLS 215
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 377
GT+LG+YPV+VLPSKTAIAPVN TFLPR++DEREMCARTIYCTNIDKKVTQAD+KLFFES
Sbjct: 216 GTVLGYYPVKVLPSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFES 275
Query: 378 VCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRA 437
+CGEV+RLRLLGDYHHSTRIAFVEFVMAESA AALNCSGVVLGSLPIRVSPSKTPVRPR
Sbjct: 276 ICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNCSGVVLGSLPIRVSPSKTPVRPRV 335
Query: 438 PR 439
PR
Sbjct: 336 PR 337
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
E+ RT+Y ++ID++VT+ L F CG+V R+ GD + R AF+EF AE A
Sbjct: 249 EMCARTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFV-MAESAT 307
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
AALN +G +LG P+RV PSKT + P P L
Sbjct: 308 AALNCSGVVLGSLPIRVSPSKTPVRPRVPRHL 339
>gi|297819578|ref|XP_002877672.1| hypothetical protein ARALYDRAFT_485298 [Arabidopsis lyrata subsp.
lyrata]
gi|297323510|gb|EFH53931.1| hypothetical protein ARALYDRAFT_485298 [Arabidopsis lyrata subsp.
lyrata]
Length = 351
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/292 (67%), Positives = 238/292 (81%), Gaps = 18/292 (6%)
Query: 149 YNQNNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFAN 208
+N+N +R N G ++++L + FSKLNPMA+EFVPPSLA++ + G F N
Sbjct: 73 FNRNGERDNNG-----EIKDLADAFSKLNPMAQEFVPPSLARSQS----------GVFRN 117
Query: 209 NSLIFNNHNARNGNVNANAAV-RRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQ 267
NN A + N R++SFGQGKRR+N RTSLAQ++++IRRTVYVSDIDQQ
Sbjct: 118 GLGFTNNFAAPPKLADGNDHFPTRRRSFGQGKRRINKRTSLAQKDDVIRRTVYVSDIDQQ 177
Query: 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR 327
VTEE LA +F+ CGQVVDCR+CGDPNSVLRFAFIEFT+E EGARAAL+++GT+LGFYP++
Sbjct: 178 VTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNE-EGARAALSMSGTVLGFYPLK 236
Query: 328 VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 387
VLPSKTAIAPVNPTFLPR+EDEREMC RT+YCTNIDK++TQ D+K+FFE +CGEV+RLR
Sbjct: 237 VLPSKTAIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKVFFEMLCGEVHRLR- 295
Query: 388 LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
LGDYHH TRIAFVEF MAESAIAAL+CSG+VLG+LPIRVSPSKTPVRP PR
Sbjct: 296 LGDYHHQTRIAFVEFAMAESAIAALHCSGIVLGALPIRVSPSKTPVRPHFPR 347
>gi|302788706|ref|XP_002976122.1| hypothetical protein SELMODRAFT_56081 [Selaginella moellendorffii]
gi|300156398|gb|EFJ23027.1| hypothetical protein SELMODRAFT_56081 [Selaginella moellendorffii]
Length = 267
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/274 (72%), Positives = 225/274 (82%), Gaps = 7/274 (2%)
Query: 166 MRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNA 225
MREL++L KLNP+A+EFVPPS T + V FF + F + R +
Sbjct: 1 MRELEDLLKKLNPLAKEFVPPS--PTTQGDLEVLLETKAFFVLATFSFFAGSDRKLGL-- 56
Query: 226 NAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD 285
+ ++ + GK+R N+R S AQREE IRRTVYVSDIDQQVTEEQLAALF+ CGQV+D
Sbjct: 57 --FLVQQNGYNTGKKRYNNRQSKAQREECIRRTVYVSDIDQQVTEEQLAALFINCGQVID 114
Query: 286 CRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
CR+CGDPNSVLRFAF+EFTDE EGAR ALNLAGTMLGFYPVRVLPSKTAI PVNPTFLPR
Sbjct: 115 CRVCGDPNSVLRFAFVEFTDE-EGARQALNLAGTMLGFYPVRVLPSKTAIVPVNPTFLPR 173
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMA 405
+EDER+MCARTIYCTNIDKKV+Q+DVKLFFES+CGEV RLRLLGDYHHSTRIAFVEF +A
Sbjct: 174 SEDERQMCARTIYCTNIDKKVSQSDVKLFFESLCGEVSRLRLLGDYHHSTRIAFVEFALA 233
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
ESA+AALNCSG +LGSLPIRVSPSKTPVRPR+PR
Sbjct: 234 ESAMAALNCSGAILGSLPIRVSPSKTPVRPRSPR 267
>gi|15229132|ref|NP_190508.1| CTC-interacting domain 10 protein [Arabidopsis thaliana]
gi|79314662|ref|NP_001030833.1| CTC-interacting domain 10 protein [Arabidopsis thaliana]
gi|12324442|gb|AAG52182.1|AC012329_9 putative RNA-binding protein; 38450-35693 [Arabidopsis thaliana]
gi|6723409|emb|CAB66418.1| RNA-binding-like protein [Arabidopsis thaliana]
gi|222424104|dbj|BAH20012.1| AT3G49390 [Arabidopsis thaliana]
gi|332645014|gb|AEE78535.1| CTC-interacting domain 10 protein [Arabidopsis thaliana]
gi|332645015|gb|AEE78536.1| CTC-interacting domain 10 protein [Arabidopsis thaliana]
Length = 353
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/293 (67%), Positives = 239/293 (81%), Gaps = 20/293 (6%)
Query: 149 YNQNNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNN--NHGVNGFNGGFF 206
++ N +R N G ++++L + FSKLNPMA+EFVPPSLA++ + +G+ GF F
Sbjct: 75 FSGNGERDNNG-----EIKDLADAFSKLNPMAQEFVPPSLARSQSGVLRNGL-GFTNNFA 128
Query: 207 ANNSLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQ 266
A L N + RR++SFGQGKRRMN RTSLAQ++++IRRTVYVSDIDQ
Sbjct: 129 APPKLADGNDHF----------PRRRRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQ 178
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
QVTEE LA +F+ CGQVVDCR+CGDPNSVLRFAFIEFT+E EGARAAL+++GT+LGFYP+
Sbjct: 179 QVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNE-EGARAALSMSGTVLGFYPL 237
Query: 327 RVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386
+VLPSKTAIAPVNPTFLPR+EDEREMC RT+YCTNIDK++TQ D+K FFE +CGEV+RLR
Sbjct: 238 KVLPSKTAIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLR 297
Query: 387 LLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
LGDYHH TRIAFVEF MAESAIAAL+CSG+VLG+LPIRVSPSKTPVRP PR
Sbjct: 298 -LGDYHHQTRIAFVEFAMAESAIAALHCSGIVLGALPIRVSPSKTPVRPHFPR 349
>gi|110737686|dbj|BAF00782.1| RNA-binding - like protein [Arabidopsis thaliana]
Length = 353
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/293 (67%), Positives = 238/293 (81%), Gaps = 20/293 (6%)
Query: 149 YNQNNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNN--NHGVNGFNGGFF 206
++ N +R N G ++++L + FSKLNPMA+EFVPPSLA++ + +G+ GF F
Sbjct: 75 FSGNGERDNNG-----EIKDLADAFSKLNPMAQEFVPPSLARSQSGVLRNGL-GFTNNFA 128
Query: 207 ANNSLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQ 266
A L N + RR++SFGQGKRRMN RTSLAQ++++IRRTVYVSDIDQ
Sbjct: 129 APPKLADGNDHF----------PRRRRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQ 178
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
QVTEE LA +F+ CGQVVDCR+CGDPNSVLRFAFIEFT+E EGARAAL+++GT+LGFYP+
Sbjct: 179 QVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNE-EGARAALSMSGTVLGFYPL 237
Query: 327 RVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386
+VLPSKTAIAPVNPTFLPR+EDEREMC RT+YCTNIDK++TQ D+K FFE CGEV+RLR
Sbjct: 238 KVLPSKTAIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMPCGEVHRLR 297
Query: 387 LLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
LGDYHH TRIAFVEF MAESAIAAL+CSG+VLG+LPIRVSPSKTPVRP PR
Sbjct: 298 -LGDYHHQTRIAFVEFAMAESAIAALHCSGIVLGALPIRVSPSKTPVRPHFPR 349
>gi|302769672|ref|XP_002968255.1| hypothetical protein SELMODRAFT_66365 [Selaginella moellendorffii]
gi|300163899|gb|EFJ30509.1| hypothetical protein SELMODRAFT_66365 [Selaginella moellendorffii]
Length = 260
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/272 (70%), Positives = 219/272 (80%), Gaps = 12/272 (4%)
Query: 166 MRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNA 225
MREL++L KLNP+A+EFVPPS G + + N+ +
Sbjct: 1 MRELEDLLKKLNPLAKEFVPPS--------RGDPALSKELLSKQ---INHQQQQLQQQQP 49
Query: 226 NAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD 285
R++ + GK+R N+R S AQREE IRRTVYVSDIDQQVTEEQLAALF+ CGQV+D
Sbjct: 50 LQQQRKQNGYNTGKKRYNNRQSKAQREECIRRTVYVSDIDQQVTEEQLAALFINCGQVID 109
Query: 286 CRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
CR+CGDPNSVLRFAF+EFTDE EGAR ALNLAGTMLGFYPVRVLPSKTAI PVNPTFLPR
Sbjct: 110 CRVCGDPNSVLRFAFVEFTDE-EGARQALNLAGTMLGFYPVRVLPSKTAIVPVNPTFLPR 168
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMA 405
+EDER+MCARTIYCTNIDKKV+Q+DVKLFFES+CGEV RLRLLGDYHHSTRIAFVEF +A
Sbjct: 169 SEDERQMCARTIYCTNIDKKVSQSDVKLFFESLCGEVSRLRLLGDYHHSTRIAFVEFALA 228
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKTPVRPRA 437
ESA+AALNCSG +LGSLPIRVSPSKTPVRPR+
Sbjct: 229 ESAMAALNCSGAILGSLPIRVSPSKTPVRPRS 260
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 345 RTEDEREMCAR-TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV 403
+++ +RE C R T+Y ++ID++VT+ + F + CG+V R+ GD + R AFVEF
Sbjct: 70 QSKAQREECIRRTVYVSDIDQQVTEEQLAALFIN-CGQVIDCRVCGDPNSVLRFAFVEFT 128
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAP 438
E A ALN +G +LG P+RV PSKT + P P
Sbjct: 129 DEEGARQALNLAGTMLGFYPVRVLPSKTAIVPVNP 163
>gi|116781618|gb|ABK22180.1| unknown [Picea sitchensis]
Length = 288
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/294 (68%), Positives = 226/294 (76%), Gaps = 34/294 (11%)
Query: 155 RSNGGGDFKRDMRELQELFSKLNPMAEEFVP-----PSLAKTNNNNHGVNGFNGGFFANN 209
R+ G F DMREL +L SKLNP+AEEF+P PS +NG G FANN
Sbjct: 24 RAENKGGFNGDMRELVDLLSKLNPLAEEFIPQPHRSPSFI--------ING--NGSFANN 73
Query: 210 SLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVT 269
S R+K +F QGKRR+N R AQ+E+ +RRTVYV DID QVT
Sbjct: 74 SR------------------RKKNNFNQGKRRLNGRNIRAQQEDSVRRTVYVCDIDHQVT 115
Query: 270 EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVL 329
EEQLAALF+ CGQV+DCRICGDPNSVLRFAFIEF DE +GARAAL+LAGTMLG+YPVRVL
Sbjct: 116 EEQLAALFINCGQVIDCRICGDPNSVLRFAFIEFADE-QGARAALSLAGTMLGYYPVRVL 174
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
PSKTAI PVNPTFLPR+EDEREMCARTIYCTNIDKKV+Q +V++FFES+CGEV RLRLLG
Sbjct: 175 PSKTAILPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQVEVRMFFESLCGEVSRLRLLG 234
Query: 390 DYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
D+ HSTRIAFVEFVMAESAI ALNCSG ++GSLPIRVSPSKTPVRPR P MH
Sbjct: 235 DHVHSTRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTPVRPRIPHPTMH 288
>gi|115474513|ref|NP_001060853.1| Os08g0116400 [Oryza sativa Japonica Group]
gi|113622822|dbj|BAF22767.1| Os08g0116400, partial [Oryza sativa Japonica Group]
Length = 283
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/205 (90%), Positives = 198/205 (96%), Gaps = 1/205 (0%)
Query: 239 KRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF 298
KRRMNSRTS+AQR+E+IRRTVYVSDID QVTEEQLAALF+ CGQVVDCR+CGDPNSVLRF
Sbjct: 80 KRRMNSRTSMAQRDEVIRRTVYVSDIDHQVTEEQLAALFINCGQVVDCRMCGDPNSVLRF 139
Query: 299 AFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIY 358
AFIEFTDE E ARAALNL+GT+LG+YPVRVLPSKTAIAPVNPTFLPR++DEREMCARTIY
Sbjct: 140 AFIEFTDE-ESARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIY 198
Query: 359 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVV 418
CTNIDKKV+QADVKLFFES+CGEVYRLRLLGDYHHSTRIAFVEFVMAESA AALNCSGV+
Sbjct: 199 CTNIDKKVSQADVKLFFESICGEVYRLRLLGDYHHSTRIAFVEFVMAESATAALNCSGVI 258
Query: 419 LGSLPIRVSPSKTPVRPRAPRLPMH 443
LGSLPIRVSPSKTPVRPRAPR MH
Sbjct: 259 LGSLPIRVSPSKTPVRPRAPRQLMH 283
>gi|168022364|ref|XP_001763710.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685203|gb|EDQ71600.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/214 (86%), Positives = 201/214 (93%), Gaps = 2/214 (0%)
Query: 231 RKKSFGQGK-RRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC 289
+K + QG RR+NSRTS AQRE+ IRRTVYVSDIDQQVTEEQLAALF+ CGQVVDCR+C
Sbjct: 1 KKNGYNQGNNRRVNSRTSRAQREDSIRRTVYVSDIDQQVTEEQLAALFITCGQVVDCRVC 60
Query: 290 GDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE 349
GDPNSVLRFAF+EFTDE EGARAAL+LAGTMLG+YPVRVLPSKTAI PVNPTFLPR+EDE
Sbjct: 61 GDPNSVLRFAFVEFTDE-EGARAALSLAGTMLGYYPVRVLPSKTAIVPVNPTFLPRSEDE 119
Query: 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAI 409
REMCARTIYCTNIDKKV+QADVKLFFES+CGEV RLRLLGDYHHSTRIAFVEFVMAESA+
Sbjct: 120 REMCARTIYCTNIDKKVSQADVKLFFESLCGEVARLRLLGDYHHSTRIAFVEFVMAESAM 179
Query: 410 AALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
AALNCSG +LGSLPIRVSPSKTPVRPR+PR P+H
Sbjct: 180 AALNCSGAILGSLPIRVSPSKTPVRPRSPRSPLH 213
>gi|50725623|dbj|BAD33090.1| putative RNA-binding protein RBP37 [Oryza sativa Japonica Group]
Length = 201
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/202 (90%), Positives = 195/202 (96%), Gaps = 1/202 (0%)
Query: 242 MNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFI 301
MNSRTS+AQR+E+IRRTVYVSDID QVTEEQLAALF+ CGQVVDCR+CGDPNSVLRFAFI
Sbjct: 1 MNSRTSMAQRDEVIRRTVYVSDIDHQVTEEQLAALFINCGQVVDCRMCGDPNSVLRFAFI 60
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTN 361
EFTDE E ARAALNL+GT+LG+YPVRVLPSKTAIAPVNPTFLPR++DEREMCARTIYCTN
Sbjct: 61 EFTDE-ESARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTN 119
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGS 421
IDKKV+QADVKLFFES+CGEVYRLRLLGDYHHSTRIAFVEFVMAESA AALNCSGV+LGS
Sbjct: 120 IDKKVSQADVKLFFESICGEVYRLRLLGDYHHSTRIAFVEFVMAESATAALNCSGVILGS 179
Query: 422 LPIRVSPSKTPVRPRAPRLPMH 443
LPIRVSPSKTPVRPRAPR MH
Sbjct: 180 LPIRVSPSKTPVRPRAPRQLMH 201
>gi|14030687|gb|AAK53018.1|AF375434_1 At1g32790 [Arabidopsis thaliana]
gi|25090128|gb|AAN72236.1| At1g32790/F6N18_9 [Arabidopsis thaliana]
Length = 201
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/202 (90%), Positives = 192/202 (95%), Gaps = 1/202 (0%)
Query: 242 MNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFI 301
MN+RTS+AQRE++IRRTVYVSD+DQQVTEEQLA LFV CGQVVDCRICGDPNSVLRFAFI
Sbjct: 1 MNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFI 60
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTN 361
EFTDE EGA ALNL+GTMLGFYPV+VLPSKTAIAPVNPTFLPRTEDE EMCARTIYCTN
Sbjct: 61 EFTDE-EGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDESEMCARTIYCTN 119
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGS 421
IDKKVTQ+DVK+FFE CGEVYRLRLLGDY HSTRIAFVEFVMAESAIAALNCSGVVLGS
Sbjct: 120 IDKKVTQSDVKIFFEYFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNCSGVVLGS 179
Query: 422 LPIRVSPSKTPVRPRAPRLPMH 443
LPIRVSPSKTPVRPR+PR PMH
Sbjct: 180 LPIRVSPSKTPVRPRSPRHPMH 201
>gi|224114547|ref|XP_002316790.1| predicted protein [Populus trichocarpa]
gi|222859855|gb|EEE97402.1| predicted protein [Populus trichocarpa]
Length = 308
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/278 (67%), Positives = 217/278 (78%), Gaps = 15/278 (5%)
Query: 166 MRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNA 225
+++L ++F+KLNP+A+EF P S K N +N F + N +A N
Sbjct: 46 VQKLVDMFTKLNPLAKEFFPSSYNKNNPKQFHINNFP---------VPNKQSA-----ND 91
Query: 226 NAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD 285
N RR+ F QG+RR+N R AQRE+ IRRTVYVSDIDQ VTEEQLA LF GCGQVVD
Sbjct: 92 NFPKRRRNDFNQGRRRLNGRAYRAQREDSIRRTVYVSDIDQHVTEEQLAGLFSGCGQVVD 151
Query: 286 CRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
CRICGDP SVLRFAF+EF E +GARAALNL GTMLG+YPVRVLPSKTAI PVNPTFLP+
Sbjct: 152 CRICGDPRSVLRFAFVEFAVE-QGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPQ 210
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMA 405
+EDEREMC RT+YCTNI+KKV+QA+VK FFES+CGEV RLRLLGD+ HSTRIAFVEF MA
Sbjct: 211 SEDEREMCTRTVYCTNIEKKVSQAEVKNFFESICGEVTRLRLLGDHVHSTRIAFVEFAMA 270
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
ESAI ALNCSG+VLGS P+RVSPSKTPVRPR RL +H
Sbjct: 271 ESAIVALNCSGMVLGSQPVRVSPSKTPVRPRVTRLALH 308
>gi|147803358|emb|CAN68836.1| hypothetical protein VITISV_026310 [Vitis vinifera]
Length = 195
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/196 (90%), Positives = 190/196 (96%), Gaps = 1/196 (0%)
Query: 248 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEA 307
+AQREE+I+RTVYVSDIDQQVTEE LAALF+ CGQVVDCRICGDPNSVLRFAF+EFTDE
Sbjct: 1 MAQREEVIKRTVYVSDIDQQVTEEDLAALFINCGQVVDCRICGDPNSVLRFAFVEFTDE- 59
Query: 308 EGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367
EGARAAL+LAGTMLG+YPVRVLPSKTAIAPVNPTFLPR+EDEREMCARTIYCTNIDKKVT
Sbjct: 60 EGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVT 119
Query: 368 QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427
QA+VKLFFES+CGEV+RLRLLGDYHHSTRIAFVEFVMAESAIAALNCSG +LGSLPIRVS
Sbjct: 120 QAEVKLFFESICGEVHRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGAILGSLPIRVS 179
Query: 428 PSKTPVRPRAPRLPMH 443
PSKTPVRPRAPR +H
Sbjct: 180 PSKTPVRPRAPRPALH 195
>gi|413921444|gb|AFW61376.1| hypothetical protein ZEAMMB73_448284 [Zea mays]
Length = 482
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/287 (67%), Positives = 219/287 (76%), Gaps = 26/287 (9%)
Query: 163 KRDMRELQELFSKLNPMAEEFVPPSLAKTNNN---NHG----------VNGF---NGGFF 206
+R+MR+L++L SKLNPMAEEFVPPSLA + HG GF N GF
Sbjct: 37 EREMRDLEDLLSKLNPMAEEFVPPSLASPISGAGAGHGALTPAPLSPAAYGFYPVNAGFA 96
Query: 207 ANN---------SLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR 257
+ + + H R + G+RR NSRTS+AQR+E IRR
Sbjct: 97 VASPGHRGVVSFPAVADAHAGRGMKKDGAGGFGGHGHGHPGRRRTNSRTSMAQRDEAIRR 156
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLA 317
TVYVSDID QVTEE LAALF+ CGQVVDCR+CGDPNSVLRFAFIEFTDE EGARAALNL+
Sbjct: 157 TVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDE-EGARAALNLS 215
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 377
GT+LG+YPV+VLPSKTAIAPVN TFLPR++DEREMCARTIYCTNIDKKVTQAD+KLFFES
Sbjct: 216 GTVLGYYPVKVLPSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFES 275
Query: 378 VCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPI 424
+CGEV+RLRLLGDYHHSTRIAFVEFVMAESA AALNCSGVVLGSLPI
Sbjct: 276 ICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNCSGVVLGSLPI 322
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y ++ID +VT+ ++ F + CG+V R+ GD + R AF+EF E A AALN
Sbjct: 156 RTVYVSDIDHQVTEENLAALFIN-CGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNL 214
Query: 415 SGVVLGSLPIRVSPSKTPVRP 435
SG VLG P++V PSKT + P
Sbjct: 215 SGTVLGYYPVKVLPSKTAIAP 235
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
E+ RT+Y ++ID++VT+ L F CG+V R+ GD + R AF+EF AE A
Sbjct: 249 EMCARTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFV-MAESAT 307
Query: 312 AALNLAGTMLGFYPVRVL 329
AALN +G +LG P+ ++
Sbjct: 308 AALNCSGVVLGSLPISLM 325
>gi|358248658|ref|NP_001240174.1| uncharacterized protein LOC100779109 [Glycine max]
gi|255639113|gb|ACU19856.1| unknown [Glycine max]
Length = 296
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/294 (64%), Positives = 227/294 (77%), Gaps = 7/294 (2%)
Query: 150 NQNNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANN 209
+ N S + + +++L ++F+KLNP+A+EF P S + N++HG GFN
Sbjct: 10 DANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSP--NHDHGFQGFNQ-LSPTQ 66
Query: 210 SLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVT 269
L+ +A +N+ RR+ SF QG+RR++ R+ AQRE+ IRRTVYVS+IDQ VT
Sbjct: 67 FLVSTKPSANENFLNSR---RRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSEIDQHVT 123
Query: 270 EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVL 329
EE+LAALF CGQV+DCRICGDP+SVLRFAF+EF DE GAR ALNL GT+LG+YPVRVL
Sbjct: 124 EERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEY-GARTALNLGGTVLGYYPVRVL 182
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
PSKTAI PVNPTFLPR++DEREMCARTIYCTNIDKKV+QA+VK FFES CGEV RLRLLG
Sbjct: 183 PSKTAILPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLG 242
Query: 390 DYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
D HSTRIAFVEF MAESAI ALNCSG++LG+ PIRVSPSKTPVRPR PR H
Sbjct: 243 DQVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVPRPASH 296
>gi|224056565|ref|XP_002298913.1| predicted protein [Populus trichocarpa]
gi|222846171|gb|EEE83718.1| predicted protein [Populus trichocarpa]
Length = 307
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/279 (66%), Positives = 216/279 (77%), Gaps = 17/279 (6%)
Query: 166 MRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNAR-NGNVN 224
+++L ++F+KLNP+A+EF P S +K N N L FNN + N
Sbjct: 45 VQKLVDMFTKLNPLAKEFFPSSYSKNNPN---------------ELHFNNFAVPVKQSAN 89
Query: 225 ANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV 284
N R++ +F QG+R++N R AQ+E+ IRRTVYVSDIDQ VTEE+LA LF GCGQVV
Sbjct: 90 DNFPKRKRNNFNQGRRKLNGRAYRAQQEDSIRRTVYVSDIDQHVTEERLAGLFSGCGQVV 149
Query: 285 DCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLP 344
DCR+CGDP+SVLRFAF+EF DE +GARAALNL GTMLG+YPVRVLPSKTAI PVNPTFLP
Sbjct: 150 DCRVCGDPHSVLRFAFVEFADE-QGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLP 208
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
R+EDEREMC RT+YCTNIDKKV+Q +VK FFES+CGEV RLRLLGD HSTRIAFVEF M
Sbjct: 209 RSEDEREMCTRTVYCTNIDKKVSQVEVKNFFESICGEVTRLRLLGDQVHSTRIAFVEFAM 268
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
AESAI ALNCSG+ LGS P+RVSPSKTPVRPR R MH
Sbjct: 269 AESAIVALNCSGMALGSQPVRVSPSKTPVRPRVTRPAMH 307
>gi|15231858|ref|NP_188063.1| CTC-interacting domain 9 protein [Arabidopsis thaliana]
gi|11994215|dbj|BAB01337.1| unnamed protein product [Arabidopsis thaliana]
gi|332642006|gb|AEE75527.1| CTC-interacting domain 9 protein [Arabidopsis thaliana]
Length = 327
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 183/300 (61%), Positives = 222/300 (74%), Gaps = 5/300 (1%)
Query: 144 LDQGLYNQNNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNG 203
+D+G+ + S + + DM +L +F KLNP+A+EF P NN V N
Sbjct: 28 IDEGIEKSSITDSKTETESRLDMHKLVAMFKKLNPLAKEFFPSYYDPKKNNQ--VAKANQ 85
Query: 204 GFFANNSLIFNNHNARNGNVNA--NAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYV 261
A++ + +++A + R+++++ QG+RR+ R S AQRE+ IRRTVYV
Sbjct: 86 FLPADDFETTKKQSGEEFDLDAKKDDNTRKRRNYSQGRRRLTGRISKAQREDSIRRTVYV 145
Query: 262 SDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTML 321
SDIDQ VTEE LA LF CGQVVDCRICGDP+SVLRFAF+EF D+ +GA AL+L GTML
Sbjct: 146 SDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADD-QGAHEALSLGGTML 204
Query: 322 GFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGE 381
GFYPVRVLPSKTAI PVNPTFLPR+EDEREMC RTIYCTNIDKKV+QADV+ FFES CGE
Sbjct: 205 GFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGE 264
Query: 382 VYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLP 441
V RLRLLGD HSTRIAFVEF +A+SA++ALNCSG+V+GS PIRVSPSKTPVRPR R P
Sbjct: 265 VTRLRLLGDQLHSTRIAFVEFALADSALSALNCSGMVVGSQPIRVSPSKTPVRPRITRPP 324
>gi|224061485|ref|XP_002300503.1| predicted protein [Populus trichocarpa]
gi|222847761|gb|EEE85308.1| predicted protein [Populus trichocarpa]
Length = 197
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 170/198 (85%), Positives = 187/198 (94%), Gaps = 1/198 (0%)
Query: 242 MNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFI 301
++SRTS+AQRE+ +RRTVYVSDIDQQVTEEQLAALF+ CGQVVDCRICGDPNSVL FAFI
Sbjct: 1 ISSRTSMAQREDTVRRTVYVSDIDQQVTEEQLAALFINCGQVVDCRICGDPNSVLHFAFI 60
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTN 361
EFTDE EGARAAL+L+GTMLG+YPV+VLPSKTAIAPVN TFLPR +DEREMCARTIYCTN
Sbjct: 61 EFTDE-EGARAALSLSGTMLGYYPVKVLPSKTAIAPVNHTFLPRNDDEREMCARTIYCTN 119
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGS 421
ID+ TQ+D+KLFFES+CGEVYRLRLLGD+HH TRIAFVEFVMAESAIAALNCSG V+GS
Sbjct: 120 IDRNFTQSDIKLFFESLCGEVYRLRLLGDHHHPTRIAFVEFVMAESAIAALNCSGAVIGS 179
Query: 422 LPIRVSPSKTPVRPRAPR 439
LPIRVSPSKTPVRPR PR
Sbjct: 180 LPIRVSPSKTPVRPRGPR 197
>gi|356556922|ref|XP_003546769.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 296
Score = 360 bits (924), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 184/295 (62%), Positives = 225/295 (76%), Gaps = 9/295 (3%)
Query: 150 NQNNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNN-HGVNGFNGGFFAN 208
+ N S + + +++L ++F+KLNP+A+EF P S + ++N G N + F
Sbjct: 10 DANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDNRFQGFNQLSPTHF-- 67
Query: 209 NSLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQV 268
L+ +A + N RR+ SF QG+R+++ R+ AQRE+ IRRTVYVS+IDQ V
Sbjct: 68 --LVSTKPSA---DENFPNNRRRRNSFNQGRRKVSGRSLKAQREDSIRRTVYVSEIDQHV 122
Query: 269 TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
TEE+LAALF CGQV+DCRICGDP+SVLRFAF+EF DE GAR ALNL GT+LG+YPVRV
Sbjct: 123 TEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEY-GARTALNLGGTVLGYYPVRV 181
Query: 329 LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL 388
LPSKTAI PVNPTFLPR++DEREMCART+YCTNIDKKV+QA+VK FFES CGEV RLRLL
Sbjct: 182 LPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKVSQAEVKNFFESACGEVMRLRLL 241
Query: 389 GDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
GD+ HSTRIAFVEF MAESAI ALNCSG++LG+ PIRVSPSKTPVRPR R H
Sbjct: 242 GDHVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVTRPASH 296
>gi|224115532|ref|XP_002317057.1| predicted protein [Populus trichocarpa]
gi|222860122|gb|EEE97669.1| predicted protein [Populus trichocarpa]
Length = 195
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 168/193 (87%), Positives = 185/193 (95%), Gaps = 1/193 (0%)
Query: 248 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEA 307
+AQ+EEI+RRTVYVSDIDQQVTEEQLAALF+ CGQVVDCRICGDP SVLRFAFIEFTDE
Sbjct: 1 MAQQEEIVRRTVYVSDIDQQVTEEQLAALFINCGQVVDCRICGDPKSVLRFAFIEFTDE- 59
Query: 308 EGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367
EGA+AAL+L+GTMLG+YPV+VLPSKTAIAPVNPTFLPR +DEREMCARTIYCTNID+ +T
Sbjct: 60 EGAQAALSLSGTMLGYYPVKVLPSKTAIAPVNPTFLPRNDDEREMCARTIYCTNIDRNLT 119
Query: 368 QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427
QA++KLFFES+CGEVY LRLLGD+HH TRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS
Sbjct: 120 QANIKLFFESLCGEVYHLRLLGDHHHPTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 179
Query: 428 PSKTPVRPRAPRL 440
PSKTPVRPR PR+
Sbjct: 180 PSKTPVRPRGPRI 192
>gi|388509636|gb|AFK42884.1| unknown [Lotus japonicus]
Length = 313
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 181/282 (64%), Positives = 223/282 (79%), Gaps = 6/282 (2%)
Query: 161 DFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNAR- 219
D + +M++L ++F+KLNP+AEEF+P S A + +H GFN ++ N + NN+N +
Sbjct: 30 DSEFNMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQ--WSPNPFLVNNNNNKP 87
Query: 220 --NGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF 277
+ RR+ +F QG RR R AQRE+ +RRTVYVSDIDQ VTEE+LAALF
Sbjct: 88 LADDQYPNANNRRRRNNFNQGGRRFTGRVLKAQREDSVRRTVYVSDIDQHVTEERLAALF 147
Query: 278 VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAP 337
CG V+DCRICGDP+SVLRFAF+EF DE GARAALNL+GT+LG+YPVRVLPSKTAI P
Sbjct: 148 TTCGSVIDCRICGDPHSVLRFAFVEFADEY-GARAALNLSGTVLGYYPVRVLPSKTAILP 206
Query: 338 VNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI 397
VNPTFLPR++DEREMC+RT+YCTNIDKKV+QA+VK FFE CGEV R+RLLGD+ HSTRI
Sbjct: 207 VNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRI 266
Query: 398 AFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
AFVEF +AESAI AL+CSG++LG+ P+RVSPSKTPVRPR PR
Sbjct: 267 AFVEFAIAESAIIALSCSGMLLGTQPVRVSPSKTPVRPRVPR 308
>gi|218187722|gb|EEC70149.1| hypothetical protein OsI_00850 [Oryza sativa Indica Group]
Length = 317
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 182/291 (62%), Positives = 217/291 (74%), Gaps = 16/291 (5%)
Query: 162 FKRDMRELQELFSKLNPMAEEFVPPSLAKTNN------------NNHGVNGFNGGFFANN 209
+++ +++L +L SKLNP A+EFVP S A ++ + + + G+NGG +
Sbjct: 28 YQKGVQKLVDLLSKLNPAAKEFVPSSAAVSSPSRKALSADAPVFDYNSIGGWNGGGKESG 87
Query: 210 SLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVT 269
+ + + R + + +RR QG+RRMN R A RE+ IRRTVYVSDID VT
Sbjct: 88 A---DAYQQRRDLTDDDQLLRRNGYLSQGRRRMNERARHADREDSIRRTVYVSDIDHTVT 144
Query: 270 EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVL 329
EE+LA +F CGQVVDCRICGDP+SVLRFAFIEF DE EGARAALNL GTMLGFYPVRVL
Sbjct: 145 EERLADIFANCGQVVDCRICGDPHSVLRFAFIEFADE-EGARAALNLGGTMLGFYPVRVL 203
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
PSKTAI PVNP FLPRTEDE+EM RT+YCTNIDKKVTQ DVK FFE +CGEV RLRLLG
Sbjct: 204 PSKTAILPVNPKFLPRTEDEKEMVIRTVYCTNIDKKVTQLDVKNFFEELCGEVSRLRLLG 263
Query: 390 DYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
D HSTRIAFVEFV AE AI ALNCSG++LG+LP+RVSPSKTPV+PR R+
Sbjct: 264 DNVHSTRIAFVEFVHAECAIMALNCSGMILGTLPVRVSPSKTPVKPRLNRV 314
>gi|115435208|ref|NP_001042362.1| Os01g0209400 [Oryza sativa Japonica Group]
gi|56201519|dbj|BAD73038.1| RNA-binding protein -like [Oryza sativa Japonica Group]
gi|56201749|dbj|BAD73106.1| RNA-binding protein -like [Oryza sativa Japonica Group]
gi|113531893|dbj|BAF04276.1| Os01g0209400 [Oryza sativa Japonica Group]
gi|215737283|dbj|BAG96212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 308
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 181/280 (64%), Positives = 214/280 (76%), Gaps = 3/280 (1%)
Query: 162 FKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNG 221
+++ +++L +L SKLNP A+EFVP S A ++ + ++ + F NS+ N +
Sbjct: 28 YQKGVQKLVDLLSKLNPAAKEFVPSSAAVSSPSRKALSA-DAPVFDYNSIGGWNGGGKES 86
Query: 222 NVNANAAVRRKKSF-GQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGC 280
+A RR+ + QG+RRMN R A RE+ IRRTVYVSDID VTEE+LA +F C
Sbjct: 87 GADAYQQRRRRNGYLSQGRRRMNERARHADREDSIRRTVYVSDIDHTVTEERLADIFANC 146
Query: 281 GQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNP 340
GQVVDCRICGDP+SVLRFAFIEF DE EGAR ALNL GTMLGFYPVRVLPSKTAI PVNP
Sbjct: 147 GQVVDCRICGDPHSVLRFAFIEFADE-EGARTALNLGGTMLGFYPVRVLPSKTAILPVNP 205
Query: 341 TFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFV 400
FLPRTEDE+EM RT+YCTNIDKKVTQ DVK FFE +CGEV RLRLLGD HSTRIAFV
Sbjct: 206 KFLPRTEDEKEMVIRTVYCTNIDKKVTQLDVKNFFEELCGEVSRLRLLGDNVHSTRIAFV 265
Query: 401 EFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
EFV AE AI ALNCSG++LG+LP+RVSPSKTPV+PR R+
Sbjct: 266 EFVHAECAIMALNCSGMILGTLPVRVSPSKTPVKPRLNRV 305
>gi|357140847|ref|XP_003571974.1| PREDICTED: uncharacterized protein LOC100841044 [Brachypodium
distachyon]
Length = 350
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 188/304 (61%), Positives = 220/304 (72%), Gaps = 31/304 (10%)
Query: 162 FKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNN---HNA 218
+K DMR+L+EL SKLNP A+EFVP S + G GG A+ + + A
Sbjct: 50 YKSDMRKLEELMSKLNPCAQEFVPSSRRAASAPAPG-----GGLSADAPVFVSAAEFFGA 104
Query: 219 RNGNVNANAA----------------------VRRKKSFGQGKRRMNSRTSLAQREEIIR 256
G + A +RR SF QG+RRM RT + RE+ +R
Sbjct: 105 GAGQLQGTGAGGGRDSSSDGSSNGGGQPQNRRIRRNGSFNQGRRRMGGRTRRSDREDSVR 164
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
RTVYVSD+DQQVTE++LA +F CGQVVDCRICGDP+SVLRFAFIEF D+A GARAALNL
Sbjct: 165 RTVYVSDVDQQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFAFIEFADDA-GARAALNL 223
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
AGTMLG+YPVRVLPSKTAI PVNP FLPRTEDE+EM +RT+YCTNIDKKVT+ DVK+FF+
Sbjct: 224 AGTMLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKKVTEDDVKIFFQ 283
Query: 377 SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPR 436
+CG+V RLRLLGDY HST IAFVEF AESAI ALN SG+VLGSLPIRVSPSKTPVRPR
Sbjct: 284 RLCGKVSRLRLLGDYVHSTCIAFVEFTQAESAILALNYSGLVLGSLPIRVSPSKTPVRPR 343
Query: 437 APRL 440
+PR+
Sbjct: 344 SPRV 347
>gi|79319864|ref|NP_001031182.1| CTC-interacting domain 8 protein [Arabidopsis thaliana]
gi|332194856|gb|AEE32977.1| CTC-interacting domain 8 protein [Arabidopsis thaliana]
Length = 308
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 175/277 (63%), Positives = 203/277 (73%), Gaps = 22/277 (7%)
Query: 166 MRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNA 225
M++L +F KLNP A+EF P TN ++ V N
Sbjct: 50 MKKLVAMFKKLNPEAKEFFPSYKRNTNQSDDFVIAIKPSGEDNK---------------- 93
Query: 226 NAAVRRKKSFGQGKR-RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV 284
+R+ ++ QG+R R+ R S AQRE+ IRRTVYVSDIDQ VTEE LA LF CGQVV
Sbjct: 94 ----KRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVV 149
Query: 285 DCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLP 344
DCRICGDPNSVLRFAF+EF+D+ +GAR+AL+L GTM+G+YPVRVLPSKTAI PVNPTFLP
Sbjct: 150 DCRICGDPNSVLRFAFVEFSDD-QGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLP 208
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
R+EDEREMC+RTIYCTN+DK T+ DV FF+S CGEV RLRLLGD HSTRIAFVEF M
Sbjct: 209 RSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAM 268
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLP 441
AESA+AALNCSG+VLGS PIRVSPSKTPVR R R P
Sbjct: 269 AESAVAALNCSGIVLGSQPIRVSPSKTPVRSRITRSP 305
>gi|222617961|gb|EEE54093.1| hypothetical protein OsJ_00835 [Oryza sativa Japonica Group]
Length = 317
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 181/291 (62%), Positives = 216/291 (74%), Gaps = 16/291 (5%)
Query: 162 FKRDMRELQELFSKLNPMAEEFVPPSLAKTNN------------NNHGVNGFNGGFFANN 209
+++ +++L +L SKLNP A+EFVP S A ++ + + + G+NGG +
Sbjct: 28 YQKGVQKLVDLLSKLNPAAKEFVPSSAAVSSPSRKALSADAPVFDYNSIGGWNGGGKESG 87
Query: 210 SLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVT 269
+ + + R + + +RR QG+RRMN R A RE+ IRRTVYVSDID VT
Sbjct: 88 A---DAYQQRRDLTDDDQLLRRNGYLSQGRRRMNERARHADREDSIRRTVYVSDIDHTVT 144
Query: 270 EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVL 329
EE+LA +F CGQVVDCRICGDP+SVLRFAFIEF DE EGAR ALNL GTMLGFYPVRVL
Sbjct: 145 EERLADIFANCGQVVDCRICGDPHSVLRFAFIEFADE-EGARTALNLGGTMLGFYPVRVL 203
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
PSKTAI PVNP FLPRTEDE+EM RT+YCTNIDKKVTQ DVK FFE +CGEV RLRLLG
Sbjct: 204 PSKTAILPVNPKFLPRTEDEKEMVIRTVYCTNIDKKVTQLDVKNFFEELCGEVSRLRLLG 263
Query: 390 DYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
D HSTRIAFVEFV AE AI ALNCSG++LG+LP+RVSPSKTPV+PR R+
Sbjct: 264 DNVHSTRIAFVEFVHAECAIMALNCSGMILGTLPVRVSPSKTPVKPRLNRV 314
>gi|51969708|dbj|BAD43546.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51970080|dbj|BAD43732.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 295
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 175/277 (63%), Positives = 203/277 (73%), Gaps = 22/277 (7%)
Query: 166 MRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNA 225
M++L +F KLNP A+EF P TN ++ V N
Sbjct: 37 MKKLVAMFKKLNPEAKEFFPSYKRNTNQSDDFVIAIKPSGEDNK---------------- 80
Query: 226 NAAVRRKKSFGQGKR-RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV 284
+R+ ++ QG+R R+ R S AQRE+ IRRTVYVSDIDQ VTEE LA LF CGQVV
Sbjct: 81 ----KRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVV 136
Query: 285 DCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLP 344
DCRICGDPNSVLRFAF+EF+D+ +GAR+AL+L GTM+G+YPVRVLPSKTAI PVNPTFLP
Sbjct: 137 DCRICGDPNSVLRFAFVEFSDD-QGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLP 195
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
R+EDEREMC+RTIYCTN+DK T+ DV FF+S CGEV RLRLLGD HSTRIAFVEF M
Sbjct: 196 RSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAM 255
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLP 441
AESA+AALNCSG+VLGS PIRVSPSKTPVR R R P
Sbjct: 256 AESAVAALNCSGIVLGSQPIRVSPSKTPVRSRITRSP 292
>gi|225462109|ref|XP_002277842.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and nuclear
[Vitis vinifera]
gi|296088694|emb|CBI38144.3| unnamed protein product [Vitis vinifera]
Length = 292
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 180/269 (66%), Positives = 209/269 (77%), Gaps = 19/269 (7%)
Query: 175 KLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKS 234
KLNP+A+EF P S ++++ LI + + + N RR+ +
Sbjct: 43 KLNPLAKEFFPSS------------------YSHDHLIPTDFSKDSPNDAYPNNRRRRNN 84
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
+ QG+RR++ R AQRE+ IRRTVYVSDIDQ VTEE+LAALF CGQVVDCR+CGDP+S
Sbjct: 85 YNQGRRRLSGRAFRAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVVDCRVCGDPHS 144
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA 354
VLRFAF+EF DE GARAALNL GTMLG+YPVRVLPSKTAI PVNPTFLPR+EDEREMCA
Sbjct: 145 VLRFAFVEFADE-HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCA 203
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+YCTNIDKKV+QA+VK FFE CGEV RLRLLGD+ HSTRIAFVEF MAESAI ALNC
Sbjct: 204 RTVYCTNIDKKVSQAEVKNFFERACGEVSRLRLLGDHVHSTRIAFVEFAMAESAIVALNC 263
Query: 415 SGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
SG+VLG+ PIRVSPSKTPVRPR PR +H
Sbjct: 264 SGLVLGTQPIRVSPSKTPVRPRVPRATLH 292
>gi|326502318|dbj|BAJ95222.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 317
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 183/290 (63%), Positives = 210/290 (72%), Gaps = 14/290 (4%)
Query: 161 DFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNN---------HG-VNGFNGGFFANNS 210
++ +D+++L +L SKLNP A+EFVP S A T +G + G NGG A+
Sbjct: 29 EYHKDVQKLVDLLSKLNPAAKEFVPSSAAATPRKGLSADAPVFYYGSIGGRNGGIGADAG 88
Query: 211 LIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTE 270
I R V+ RR G+RR N R A REE IRRTVYVS++D VTE
Sbjct: 89 YIGYQQRMRRNFVDNE---RRNGYINHGRRRTNERARRADREESIRRTVYVSELDHTVTE 145
Query: 271 EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330
E+LA +F CGQVVDCRICGDPNSV+RFAFIEF E EGARAALNL GTMLGFYPVRVLP
Sbjct: 146 ERLAEIFANCGQVVDCRICGDPNSVMRFAFIEFAGE-EGARAALNLGGTMLGFYPVRVLP 204
Query: 331 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD 390
SKTAI PVNP FLP TEDE+EM RT+YCTNIDKKVTQ DVK FFE +CGEV RLRLLGD
Sbjct: 205 SKTAILPVNPKFLPATEDEKEMVIRTVYCTNIDKKVTQLDVKSFFEELCGEVSRLRLLGD 264
Query: 391 YHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
HSTRIAFVEFV AE AI ALNCSG++LG+LP+RVSPSKTPV+PR R+
Sbjct: 265 NVHSTRIAFVEFVNAEGAIQALNCSGMILGTLPVRVSPSKTPVKPRLNRV 314
>gi|255578158|ref|XP_002529948.1| RNA-binding protein, putative [Ricinus communis]
gi|223530546|gb|EEF32425.1| RNA-binding protein, putative [Ricinus communis]
Length = 281
Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 170/260 (65%), Positives = 206/260 (79%), Gaps = 10/260 (3%)
Query: 166 MRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNA 225
+++L ++F+KLNP+A+EF P S NNNN N N NN + + + N ++
Sbjct: 31 VQKLVDMFTKLNPLAKEFFPSSY---NNNNITHNFLN----LNNFAVVVDKQSPIDNFSS 83
Query: 226 NAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD 285
N R++ ++ QGKRR+N R AQR++ IRRTVYVSDIDQ VTEE+LA LF CGQVVD
Sbjct: 84 NR--RKRNNYNQGKRRLNGRAYRAQRDDSIRRTVYVSDIDQHVTEERLAGLFSSCGQVVD 141
Query: 286 CRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
CR+CGDP+SVLRFAF+EF DE GARAALNL GT+LG+YP RVLPSKTAI PVNPTFLPR
Sbjct: 142 CRVCGDPHSVLRFAFVEFADE-HGARAALNLGGTVLGYYPFRVLPSKTAILPVNPTFLPR 200
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMA 405
+EDEREMC+RT+YCTNIDKK++QA+VK FFES CGEV RLRLLGD+ HSTRIAFVEF MA
Sbjct: 201 SEDEREMCSRTVYCTNIDKKISQAEVKTFFESTCGEVTRLRLLGDHVHSTRIAFVEFAMA 260
Query: 406 ESAIAALNCSGVVLGSLPIR 425
ESAI ALNCSG+V+G+ PIR
Sbjct: 261 ESAIIALNCSGMVVGTQPIR 280
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y ++ID+ VT+ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 113 RTVYVSDIDQHVTEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 171
Query: 415 SGVVLGSLPIRVSPSKTPVRPRAP 438
G VLG P RV PSKT + P P
Sbjct: 172 GGTVLGYYPFRVLPSKTAILPVNP 195
>gi|357127346|ref|XP_003565343.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Brachypodium distachyon]
Length = 310
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 183/294 (62%), Positives = 215/294 (73%), Gaps = 27/294 (9%)
Query: 162 FKRDMRELQELFSKLNPMAEEFVPPSLAKTNN----------NNHGVNGFNGGF---FAN 208
+++D+++L +L S LNP A EFVP S A + + + G NGG +
Sbjct: 28 YQKDVQKLVDLLSNLNPAAREFVPSSAAPPSKKALSADAPVFDYCSIGGANGGSRDSGVD 87
Query: 209 NSLIFNN-HNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQ 267
++ I N H R+G +N G+RRMN R A RE+ IRRTVYVS++D
Sbjct: 88 STYIGNQQHKMRSGYIN------------HGRRRMNERARRADREDSIRRTVYVSELDHT 135
Query: 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR 327
VTEE+LA +F CGQVVDCRICGDP+SVLRFAFIEF+DE EGARAALNL GTMLGFYPVR
Sbjct: 136 VTEERLADIFANCGQVVDCRICGDPHSVLRFAFIEFSDE-EGARAALNLGGTMLGFYPVR 194
Query: 328 VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 387
VLPSKTAI PVNP FLPRTEDE+EM RTIYCTNIDKKVTQ DVK FF+ +CGEV RLRL
Sbjct: 195 VLPSKTAILPVNPKFLPRTEDEKEMVIRTIYCTNIDKKVTQLDVKSFFQELCGEVSRLRL 254
Query: 388 LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLP 441
LGD HSTRIAFVEFV AE AI ALNCSG++LG+LP+RVSPSKTPV+PR R+P
Sbjct: 255 LGDNVHSTRIAFVEFVNAEGAIMALNCSGMILGTLPVRVSPSKTPVKPRINRVP 308
>gi|357124236|ref|XP_003563809.1| PREDICTED: uncharacterized protein LOC100835921 [Brachypodium
distachyon]
Length = 351
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 179/307 (58%), Positives = 217/307 (70%), Gaps = 27/307 (8%)
Query: 161 DFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIF------- 213
++K D+R+L+ELF KLNP AEEFVP L++ + + F + ++ +
Sbjct: 48 EYKSDVRKLEELFKKLNPSAEEFVP--LSRRQADGGRRLSADAPVFVSPAIDYYAPHHPF 105
Query: 214 -----------------NNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIR 256
++ +G+VN RR+ F QG+RRM R RE+ +R
Sbjct: 106 QQQQPQQMHVLQVVGGGGRDSSSDGSVNGQPNRRRRNGFNQGRRRMGPRPRRTDREDSVR 165
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
RTVYVSDIDQ VTE++LA +F CGQVVDCRICGDPNSV+RFAFIEF D+ GARAAL+L
Sbjct: 166 RTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVMRFAFIEFADDV-GARAALSL 224
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
AGT+LG+YPVRVLPSKTAI PVNP FLPRTEDE+EM +RT+YCTNIDK V + VK FFE
Sbjct: 225 AGTILGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNVPEDVVKKFFE 284
Query: 377 SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPR 436
+CGEV RLRLLGDY HST IAFVEFV AE AI ALNCSG++LGSLP+RVSPSKTPVRPR
Sbjct: 285 GICGEVARLRLLGDYVHSTCIAFVEFVQAEGAIMALNCSGMLLGSLPVRVSPSKTPVRPR 344
Query: 437 APRLPMH 443
+PR H
Sbjct: 345 SPRAMSH 351
>gi|15220902|ref|NP_175769.1| CTC-interacting domain 8 protein [Arabidopsis thaliana]
gi|12324022|gb|AAG51971.1|AC024260_9 RNA-binding protein, putative; 40942-42923 [Arabidopsis thaliana]
gi|48427656|gb|AAT42377.1| At1g53650 [Arabidopsis thaliana]
gi|332194855|gb|AEE32976.1| CTC-interacting domain 8 protein [Arabidopsis thaliana]
Length = 314
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 174/279 (62%), Positives = 202/279 (72%), Gaps = 20/279 (7%)
Query: 166 MRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNA 225
M++L +F KLNP A+EF P TN ++ V +G N
Sbjct: 50 MKKLVAMFKKLNPEAKEFFPSYKRNTNQSDDFVIAIKP----------------SGEDNK 93
Query: 226 NAAVRRKKSFGQGKR---RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQ 282
A+ R++ + R+ R S AQRE+ IRRTVYVSDIDQ VTEE LA LF CGQ
Sbjct: 94 KVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQ 153
Query: 283 VVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTF 342
VVDCRICGDPNSVLRFAF+EF+D+ +GAR+AL+L GTM+G+YPVRVLPSKTAI PVNPTF
Sbjct: 154 VVDCRICGDPNSVLRFAFVEFSDD-QGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTF 212
Query: 343 LPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF 402
LPR+EDEREMC+RTIYCTN+DK T+ DV FF+S CGEV RLRLLGD HSTRIAFVEF
Sbjct: 213 LPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEF 272
Query: 403 VMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLP 441
MAESA+AALNCSG+VLGS PIRVSPSKTPVR R R P
Sbjct: 273 AMAESAVAALNCSGIVLGSQPIRVSPSKTPVRSRITRSP 311
>gi|326514092|dbj|BAJ92196.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326532980|dbj|BAJ89335.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 351
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 177/307 (57%), Positives = 215/307 (70%), Gaps = 27/307 (8%)
Query: 161 DFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIF------- 213
++K D+R+L+ELF KLNP AEEFVP L++ + + F + ++ +
Sbjct: 48 EYKSDVRKLEELFKKLNPSAEEFVP--LSRRQGDGARRLSADAPVFVSPAIDYYAPHHPF 105
Query: 214 -----------------NNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIR 256
++ +G+ N RR+ F QG+RRM R RE+ +R
Sbjct: 106 QHQQMHVLQVVGGGGGAGRDSSSDGSANGQPNRRRRNGFNQGRRRMGVRPRRTDREDSVR 165
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
RTVYVSDIDQ VTE++LA +F CGQVVDCRICGDPNSV+RFAFIEF D+ GARAAL L
Sbjct: 166 RTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVMRFAFIEFADDV-GARAALAL 224
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
GT+LGFYPVRVLPSKTAI PVNP FLPRTEDE+EM +RT+YCTNIDK V + VK FFE
Sbjct: 225 GGTVLGFYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNVPEDVVKNFFE 284
Query: 377 SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPR 436
+CGEV RLRLLGDY H+T IAFVEFV AE AI ALNCSG++LGSLP+RVSPSKTPVRPR
Sbjct: 285 GICGEVARLRLLGDYVHATCIAFVEFVEAEGAILALNCSGMLLGSLPVRVSPSKTPVRPR 344
Query: 437 APRLPMH 443
+PR+ H
Sbjct: 345 SPRVVSH 351
>gi|413941689|gb|AFW74338.1| hypothetical protein ZEAMMB73_453710 [Zea mays]
Length = 182
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 159/177 (89%), Positives = 171/177 (96%), Gaps = 1/177 (0%)
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
+VTEE LAALF+ CGQVVDCR+CGDPNSVLRFAFIEFTDE EGARAALNL+GT+LG+YPV
Sbjct: 7 RVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDE-EGARAALNLSGTVLGYYPV 65
Query: 327 RVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386
RVLPSKTAIAPVNPTFLPR++DEREMCARTIYCTNIDKKVTQAD+KLFFES+CGEV+RLR
Sbjct: 66 RVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICGEVFRLR 125
Query: 387 LLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
LLGDYHHSTRIAFVEFVMAESA AALNCSGV+LGSLPIRVSPSKTPVRPRAPR MH
Sbjct: 126 LLGDYHHSTRIAFVEFVMAESATAALNCSGVILGSLPIRVSPSKTPVRPRAPRQLMH 182
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
E+ RT+Y ++ID++VT+ L F CG+V R+ GD + R AF+EF AE A
Sbjct: 90 EMCARTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFV-MAESAT 148
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNP 340
AALN +G +LG P+RV PSKT + P P
Sbjct: 149 AALNCSGVILGSLPIRVSPSKTPVRPRAP 177
>gi|297812631|ref|XP_002874199.1| ctc-interacting domain 13 [Arabidopsis lyrata subsp. lyrata]
gi|297320036|gb|EFH50458.1| ctc-interacting domain 13 [Arabidopsis lyrata subsp. lyrata]
Length = 313
Score = 337 bits (863), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 168/268 (62%), Positives = 210/268 (78%), Gaps = 18/268 (6%)
Query: 168 ELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANA 227
+L S+LNPMA+EFVP LA+T++ F + L F N N V A +
Sbjct: 58 DLMSEISRLNPMAKEFVPSFLAQTHSE-----------FLRSRLWFTN----NFPVQAIS 102
Query: 228 AVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCR 287
+RR SFGQG+R +N +T+L Q E++I+RTVYVSDIDQQVTEEQLA+LF+ CGQVVDCR
Sbjct: 103 TMRR--SFGQGRRWINKKTNLVQNEDVIKRTVYVSDIDQQVTEEQLASLFLSCGQVVDCR 160
Query: 288 ICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE 347
ICGD S+LRFAFIEFTD AEGAR+AL +GT+ G +P+RV SKTAIAPVNP+FLPR+E
Sbjct: 161 ICGDHKSILRFAFIEFTD-AEGARSALRKSGTVFGSHPIRVHISKTAIAPVNPSFLPRSE 219
Query: 348 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAES 407
+E E C +T+YCTNIDK+VT+ +++ FF++VCGEV+ LRLLGD++H TRIAFVEF +AES
Sbjct: 220 EELEKCGKTVYCTNIDKQVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAES 279
Query: 408 AIAALNCSGVVLGSLPIRVSPSKTPVRP 435
AI+ALN SGVVLG LPIR+SPSKTPVRP
Sbjct: 280 AISALNYSGVVLGELPIRISPSKTPVRP 307
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
++ RT+Y ++ID++VT+ + F S CG+V R+ GD+ R AF+EF AE A +
Sbjct: 126 DVIKRTVYVSDIDQQVTEEQLASLFLS-CGQVVDCRICGDHKSILRFAFIEFTDAEGARS 184
Query: 411 ALNCSGVVLGSLPIRVSPSKTPVRPRAP 438
AL SG V GS PIRV SKT + P P
Sbjct: 185 ALRKSGTVFGSHPIRVHISKTAIAPVNP 212
>gi|242051635|ref|XP_002454963.1| hypothetical protein SORBIDRAFT_03g002180 [Sorghum bicolor]
gi|241926938|gb|EES00083.1| hypothetical protein SORBIDRAFT_03g002180 [Sorghum bicolor]
Length = 298
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 177/290 (61%), Positives = 209/290 (72%), Gaps = 21/290 (7%)
Query: 161 DFKRDMRELQELFSKLNPMAEEFVPPSLAKTNN----------NNHGVNGFNGGFFANNS 210
+++ +++L +L SKLNP A+EFVP + A + + G NG A
Sbjct: 17 EYQAGVQKLVDLLSKLNPAAKEFVPSAAASPPKKALSADAPVFDYRSIGGGNGATDAAFY 76
Query: 211 LIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTE 270
+ F N + R GN N QG+RR N R A+RE+ IRRTVYVS++D VTE
Sbjct: 77 VGFGNQHRRRGNGYIN----------QGRRRTNDRVRRAEREDSIRRTVYVSELDHTVTE 126
Query: 271 EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330
E+LA +F CGQVVDCRICGDP+SVLRFAFIEF+DE EGAR ALNL GT+ GFYPVRVLP
Sbjct: 127 ERLADIFATCGQVVDCRICGDPHSVLRFAFIEFSDE-EGARTALNLGGTIFGFYPVRVLP 185
Query: 331 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD 390
SKTAI PVNP FLPRTEDE+EM RT+YCTNIDK VTQ DVK FFE +CGEV RLRLLGD
Sbjct: 186 SKTAILPVNPKFLPRTEDEKEMVMRTVYCTNIDKMVTQLDVKKFFEELCGEVSRLRLLGD 245
Query: 391 YHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
HSTRIAFVEFV AE AI ALNCSG++LG+LP+RVSPSKTPV+PR R+
Sbjct: 246 NVHSTRIAFVEFVHAEGAIMALNCSGMILGTLPVRVSPSKTPVKPRVNRV 295
>gi|388522717|gb|AFK49420.1| unknown [Medicago truncatula]
Length = 188
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 158/189 (83%), Positives = 178/189 (94%), Gaps = 2/189 (1%)
Query: 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
+IRRTVYVSDIDQ VTEEQLA+LF+ CGQVVDCR+CGDPNS+LRFAFIEFTDE E ARAA
Sbjct: 1 MIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDE-ESARAA 59
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
++L+GTMLG+YP+RVLPSKTAIAPVNPT LPR+EDEREMC+RTIYCTNIDKK+TQADVK
Sbjct: 60 VSLSGTMLGYYPLRVLPSKTAIAPVNPTSLPRSEDEREMCSRTIYCTNIDKKLTQADVKH 119
Query: 374 FFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPV 433
FFES+CGEV+RLRLLGDY HSTRIAFVEF +AESAIAAL+CSGV+LG+LPIRVSPSKTPV
Sbjct: 120 FFESICGEVHRLRLLGDYQHSTRIAFVEFAVAESAIAALSCSGVILGALPIRVSPSKTPV 179
Query: 434 RPR-APRLP 441
R R +PR P
Sbjct: 180 RARSSPRSP 188
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 246 TSLAQRE---EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFI 301
TSL + E E+ RT+Y ++ID+++T+ + F CG+V R+ GD R AF+
Sbjct: 87 TSLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFV 146
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
EF AE A AAL+ +G +LG P+RV PSKT +
Sbjct: 147 EFA-VAESAIAALSCSGVILGALPIRVSPSKTPV 179
>gi|218198344|gb|EEC80771.1| hypothetical protein OsI_23281 [Oryza sativa Indica Group]
Length = 372
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 178/315 (56%), Positives = 216/315 (68%), Gaps = 33/315 (10%)
Query: 161 DFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHN--- 217
++K D R+L+ELF KLNP AEEFVP + + + + F + ++ F + +
Sbjct: 59 EYKSDARKLEELFKKLNPSAEEFVPLARRRGGGDGARRLSADAPVFVSPAIDFYSQHPVQ 118
Query: 218 ----------------------ARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEII 255
+ +G+ N RR+ SF QG+RRM R RE+ +
Sbjct: 119 QPPPIQVLPVVVGGGGGAGLDSSSDGSTNGQPNRRRRSSFNQGRRRMGGRPRRTDREDSV 178
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN 315
RRTVYVSDIDQ VTE++LA +F CGQVVDCRICGDPNSVLRFAFIEF D+ GARAAL
Sbjct: 179 RRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFAFIEFADDV-GARAALT 237
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L GT+LG+YPVRVLPSKTAI PVNP FLPRTEDE+EM +RT+YCTNIDK V + VK FF
Sbjct: 238 LGGTVLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNVPEDAVKSFF 297
Query: 376 ESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR-------VSP 428
E +CGEV RLRLLGDY HST IAFVEFV A+SAI AL+CSG+VLG+LP+R VSP
Sbjct: 298 EGMCGEVARLRLLGDYVHSTCIAFVEFVQADSAILALSCSGMVLGALPVRQANTPYAVSP 357
Query: 429 SKTPVRPRAPRLPMH 443
SKTPVRPR+PR+ H
Sbjct: 358 SKTPVRPRSPRVTSH 372
>gi|242093252|ref|XP_002437116.1| hypothetical protein SORBIDRAFT_10g021290 [Sorghum bicolor]
gi|241915339|gb|EER88483.1| hypothetical protein SORBIDRAFT_10g021290 [Sorghum bicolor]
Length = 364
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 177/315 (56%), Positives = 212/315 (67%), Gaps = 37/315 (11%)
Query: 162 FKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNG 221
+ D+R+L+ELFSKLNP AEEFVPPS + + ++ F + + H+
Sbjct: 48 YASDIRKLEELFSKLNPSAEEFVPPSRRRVDGGARRLSADAPVFVSPAIDYYARHHQLPP 107
Query: 222 N-----------------------------------VNANAAVRRKKSFGQGKRRMNSRT 246
VN RR+ F QG+RRM
Sbjct: 108 PPLQQQQPMHVLQFVGGVGGGGMGGGGGRDSSSDGSVNGQPNRRRRNGFIQGRRRMMGGR 167
Query: 247 SL-AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD 305
+ RE+ +RRTVYVSDIDQ VTE++LA +F CGQVVDCRICGDPNSVLRFAFIEF D
Sbjct: 168 PRRSDREDSVRRTVYVSDIDQHVTEQKLAEVFSTCGQVVDCRICGDPNSVLRFAFIEFAD 227
Query: 306 EAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK 365
+ GA+AAL L GT+LGFYPV+VLPSKTAI PVNP FLPRTEDE+EM +RT+YCTNIDKK
Sbjct: 228 DV-GAQAALALGGTVLGFYPVKVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKK 286
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 425
+ + +VK FFE CGEV RLRLLGDY HST IAFVEFV A+SAI ALNCSG+VLG+LP+R
Sbjct: 287 IGEDEVKQFFEGTCGEVSRLRLLGDYVHSTCIAFVEFVQADSAILALNCSGIVLGTLPVR 346
Query: 426 VSPSKTPVRPRAPRL 440
VSPSKTPVRPR+PR+
Sbjct: 347 VSPSKTPVRPRSPRV 361
>gi|226507984|ref|NP_001149092.1| LOC100282713 [Zea mays]
gi|195624680|gb|ACG34170.1| CID11 [Zea mays]
gi|414875767|tpg|DAA52898.1| TPA: CID11 [Zea mays]
Length = 299
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 172/290 (59%), Positives = 207/290 (71%), Gaps = 21/290 (7%)
Query: 161 DFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARN 220
+++ +++L +L S LNP A+EFVP + A + ++ +F+ H+
Sbjct: 18 EYQAGVQKLVDLLSNLNPAAKEFVPSAAASPPKKA----------LSADAPVFDYHSIGG 67
Query: 221 GNVNANAA----------VRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTE 270
GN +AA R QG+RR N R A RE+ IRRTVYVS++D VTE
Sbjct: 68 GNGATDAAFYVGFGHQPRTRGNGYINQGRRRTNGRVRRADREDSIRRTVYVSELDHTVTE 127
Query: 271 EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330
E+LA +F CGQVVDCRICGDP+SVLRFAFIEF+DE EGAR ALNL GT+ GFYPVRVLP
Sbjct: 128 ERLADIFTTCGQVVDCRICGDPHSVLRFAFIEFSDE-EGARTALNLGGTIFGFYPVRVLP 186
Query: 331 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD 390
SKTAI PVNP FLPRT+DE+EM RT+YCTNIDK VTQ DVK FFE +CGEV RLRLLGD
Sbjct: 187 SKTAILPVNPKFLPRTDDEKEMVMRTVYCTNIDKMVTQLDVKKFFEELCGEVSRLRLLGD 246
Query: 391 YHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
HSTRIAFVEFV AE AI ALNCSG++LG+LP+RVSPSKTPV+PR R+
Sbjct: 247 NVHSTRIAFVEFVHAEGAIMALNCSGMILGTLPVRVSPSKTPVKPRVNRV 296
>gi|15238531|ref|NP_197832.1| CTC-interacting domain 13 protein [Arabidopsis thaliana]
gi|9758532|dbj|BAB08927.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|332005928|gb|AED93311.1| CTC-interacting domain 13 protein [Arabidopsis thaliana]
Length = 320
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 159/266 (59%), Positives = 203/266 (76%), Gaps = 11/266 (4%)
Query: 169 LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAA 228
L+ S LNPMA+EFVP LA+T+++ F N F NH +
Sbjct: 59 LKSEISHLNPMAKEFVPSFLAQTHHSE----------FWGNRFWFTNHFPKQTIFLIGQF 108
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRI 288
+++FG+G+ + +T+L Q E++I+RTVYVSDID QVTEEQLA+LF+ CGQVVDCR+
Sbjct: 109 ATMRRNFGKGRPWITKKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCRM 168
Query: 289 CGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTED 348
CGD S+LRFAFIEFTD AEGAR+AL +GTM G +P+RV SKTAIAPVNP+FLP+++D
Sbjct: 169 CGDYKSILRFAFIEFTD-AEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKD 227
Query: 349 EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA 408
E E C +T+YCTNIDK+VT+ +++ FF++VCGEV+ LRLLGD++H TRIAFVEF +AESA
Sbjct: 228 ELEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESA 287
Query: 409 IAALNCSGVVLGSLPIRVSPSKTPVR 434
I+ALNCSGVVLG LPIRVSPSKTPVR
Sbjct: 288 ISALNCSGVVLGELPIRVSPSKTPVR 313
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
+M RT+Y ++ID +VT+ + F S CG+V R+ GDY R AF+EF AE A +
Sbjct: 133 DMIKRTVYVSDIDNQVTEEQLASLFLS-CGQVVDCRMCGDYKSILRFAFIEFTDAEGARS 191
Query: 411 ALNCSGVVLGSLPIRVSPSKTPVRPRAP 438
AL SG + GS PIRV SKT + P P
Sbjct: 192 ALRKSGTMFGSHPIRVFMSKTAIAPVNP 219
>gi|449438949|ref|XP_004137250.1| PREDICTED: protein MEI2-like 2-like [Cucumis sativus]
gi|449483120|ref|XP_004156498.1| PREDICTED: protein MEI2-like 2-like [Cucumis sativus]
Length = 306
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 167/278 (60%), Positives = 210/278 (75%), Gaps = 9/278 (3%)
Query: 165 DMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVN 224
D +L E+FS LNP+A+EF P S + +H F+ + NN + N + ++
Sbjct: 28 DAHKLAEMFSNLNPLAKEFFPSSYS-----HHDRQDFHFYYQNNNRSLAKNFQVADQLLH 82
Query: 225 ANAAVRRKKSFG-QGKRRMNS-RTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVG-CG 281
++ RR+ F QG+RRMN+ R+ AQ+EE IRRTVYVSDID+ V+EE+LA +F CG
Sbjct: 83 SDNNRRRRPEFNNQGRRRMNNNRSVRAQQEESIRRTVYVSDIDKDVSEEELAKVFREFCG 142
Query: 282 QVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 341
V DCRICGDP+SVLRFAF+EF +E ARAA+ L+GT++G YPV+VLPSKTAI PVNPT
Sbjct: 143 YVNDCRICGDPHSVLRFAFVEFANE-HSARAAVGLSGTVVGSYPVKVLPSKTAILPVNPT 201
Query: 342 FLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVE 401
FLP++ DE +MC RTIYCTNIDKKV+QA+VK FFE+ CGEV RLRLLGD HSTRIAFVE
Sbjct: 202 FLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCGEVTRLRLLGDQLHSTRIAFVE 261
Query: 402 FVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
F +AE+A+ ALNCSG++LG+ PIRVSPSKTPVRPR R
Sbjct: 262 FALAETALQALNCSGMILGAQPIRVSPSKTPVRPRVTR 299
>gi|297829996|ref|XP_002882880.1| ctc-interacting domain 9 [Arabidopsis lyrata subsp. lyrata]
gi|297328720|gb|EFH59139.1| ctc-interacting domain 9 [Arabidopsis lyrata subsp. lyrata]
Length = 337
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 168/283 (59%), Positives = 203/283 (71%), Gaps = 11/283 (3%)
Query: 165 DMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVN 224
DM++L +F KLNP+A+EF P NH V N A++ N + + +
Sbjct: 57 DMQKLVAMFKKLNPLAKEFFPSYYDP--KKNHHVGKANQFLSADDFATTNKQSGEEFDPD 114
Query: 225 A--NAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQ 282
A + R+++++ QG+RR+ R S AQRE+ IRRTVYVSDIDQ VTEE LA LF CGQ
Sbjct: 115 AKKDDNTRKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQ 174
Query: 283 VVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVL----PSKTAIAPV 338
VVDCRICGDP+SVLRFAF+EF D+ +GAR AL+L GTMLGFYPVRV S++ I+
Sbjct: 175 VVDCRICGDPHSVLRFAFVEFADD-QGAREALSLGGTMLGFYPVRVKNCHSTSESHISSK 233
Query: 339 NPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIA 398
+EDEREMC RTIYCTNIDKKV+QADV+ FFES CGEV RLRLLGD HSTRIA
Sbjct: 234 GK--CSDSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIA 291
Query: 399 FVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLP 441
FVEF +A+SA+ ALNCSG+V+GS PIRVSPSKTPVRPR R P
Sbjct: 292 FVEFTLADSALRALNCSGMVVGSQPIRVSPSKTPVRPRITRPP 334
>gi|218190389|gb|EEC72816.1| hypothetical protein OsI_06525 [Oryza sativa Indica Group]
Length = 287
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 177/286 (61%), Positives = 207/286 (72%), Gaps = 20/286 (6%)
Query: 173 FSKLNPMAEEFVPPS----LAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAA 228
SKLNP A+EFVP S + G++ + F + + F A G V +
Sbjct: 1 MSKLNPRAQEFVPSSRRAPPSSAAQAAVGLSA-DAPVFVSAAEYFVGSGAGAGGVGGRDS 59
Query: 229 V--------------RRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLA 274
RR+ F QG+RR RT A RE+ +RRTVYVSDIDQQVTE++LA
Sbjct: 60 SSDGSSNGGGQPQNRRRRSGFNQGRRRTGGRTRRADREDSVRRTVYVSDIDQQVTEQKLA 119
Query: 275 ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTA 334
+F CGQVVDCRICGDP+SVLRFAFIEF D+A GARAAL L GTMLG+YPVRVLPSKTA
Sbjct: 120 EVFSNCGQVVDCRICGDPHSVLRFAFIEFADDA-GARAALTLGGTMLGYYPVRVLPSKTA 178
Query: 335 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHS 394
I PVNP FLPRTEDE+EM +RT+YCTNIDKKVT+ DVK+FF+ +CG+V RLRLLGDY HS
Sbjct: 179 ILPVNPKFLPRTEDEKEMVSRTVYCTNIDKKVTEEDVKIFFQQLCGKVSRLRLLGDYVHS 238
Query: 395 TRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
T IAFVEF AESAI ALN SG+VLG+LPIRVSPSKTPVRPR+PR+
Sbjct: 239 TCIAFVEFAQAESAILALNYSGMVLGTLPIRVSPSKTPVRPRSPRV 284
>gi|125581461|gb|EAZ22392.1| hypothetical protein OsJ_06050 [Oryza sativa Japonica Group]
Length = 299
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 160/211 (75%), Positives = 182/211 (86%), Gaps = 1/211 (0%)
Query: 230 RRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC 289
RR+ F QG+RR RT A RE+ +RRTVYVSDIDQQVTE++LA +F CGQVVDCRIC
Sbjct: 87 RRRSGFNQGRRRTGGRTRRADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDCRIC 146
Query: 290 GDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE 349
GDP+SVLRFAFIEF D+A GARAAL L GTMLG+YPVRVLPSKTAI PVNP FLPRTEDE
Sbjct: 147 GDPHSVLRFAFIEFADDA-GARAALTLGGTMLGYYPVRVLPSKTAILPVNPKFLPRTEDE 205
Query: 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAI 409
+EM +RT+YCTNIDKKVT+ DVK+FF+ +CG+V RLRLLGDY HST IAFVEF AESAI
Sbjct: 206 KEMVSRTVYCTNIDKKVTEEDVKIFFQQLCGKVSRLRLLGDYVHSTCIAFVEFAQAESAI 265
Query: 410 AALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
ALN SG+VLG+LPIRVSPSKTPVRPR+PR+
Sbjct: 266 LALNYSGMVLGTLPIRVSPSKTPVRPRSPRV 296
>gi|115445273|ref|NP_001046416.1| Os02g0244600 [Oryza sativa Japonica Group]
gi|50252270|dbj|BAD28276.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113535947|dbj|BAF08330.1| Os02g0244600 [Oryza sativa Japonica Group]
Length = 359
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 160/211 (75%), Positives = 182/211 (86%), Gaps = 1/211 (0%)
Query: 230 RRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC 289
RR+ F QG+RR RT A RE+ +RRTVYVSDIDQQVTE++LA +F CGQVVDCRIC
Sbjct: 147 RRRSGFNQGRRRTGGRTRRADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDCRIC 206
Query: 290 GDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE 349
GDP+SVLRFAFIEF D+A GARAAL L GTMLG+YPVRVLPSKTAI PVNP FLPRTEDE
Sbjct: 207 GDPHSVLRFAFIEFADDA-GARAALTLGGTMLGYYPVRVLPSKTAILPVNPKFLPRTEDE 265
Query: 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAI 409
+EM +RT+YCTNIDKKVT+ DVK+FF+ +CG+V RLRLLGDY HST IAFVEF AESAI
Sbjct: 266 KEMVSRTVYCTNIDKKVTEEDVKIFFQQLCGKVSRLRLLGDYVHSTCIAFVEFAQAESAI 325
Query: 410 AALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
ALN SG+VLG+LPIRVSPSKTPVRPR+PR+
Sbjct: 326 LALNYSGMVLGTLPIRVSPSKTPVRPRSPRV 356
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 162 FKRDMRELQELFSKLNPMAEEFV 184
+K DMR+L+EL SKLNP A+EFV
Sbjct: 57 YKSDMRKLEELMSKLNPRAQEFV 79
>gi|414868267|tpg|DAA46824.1| TPA: hypothetical protein ZEAMMB73_802900 [Zea mays]
Length = 328
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 151/176 (85%), Positives = 163/176 (92%), Gaps = 1/176 (0%)
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
+VTEE LAALF+ CGQVVDCR+CGDPNSVLRFAFIEFTD+ EGARAALNL+G MLG+YPV
Sbjct: 152 EVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDD-EGARAALNLSGNMLGYYPV 210
Query: 327 RVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386
VLPSKTAIAPVN TFLPR++DEREMCARTIYCTNIDK V QAD+KLFFES+CGEV+RLR
Sbjct: 211 NVLPSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKMVAQADLKLFFESICGEVFRLR 270
Query: 387 LLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPM 442
LLGDYHHSTRIAFVEFVMAESA AALN SGVVLGSLPIRV+PSKTPVRPR PR M
Sbjct: 271 LLGDYHHSTRIAFVEFVMAESATAALNSSGVVLGSLPIRVNPSKTPVRPRDPRQLM 326
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
E+ RT+Y ++ID+ V + L F CG+V R+ GD + R AF+EF AE A
Sbjct: 235 EMCARTIYCTNIDKMVAQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFV-MAESAT 293
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNP 340
AALN +G +LG P+RV PSKT + P +P
Sbjct: 294 AALNSSGVVLGSLPIRVNPSKTPVRPRDP 322
>gi|297853152|ref|XP_002894457.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297340299|gb|EFH70716.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 769
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 162/256 (63%), Positives = 186/256 (72%), Gaps = 11/256 (4%)
Query: 172 LFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 231
+F KLNP A+EF P S K N + + F +I + + + RR
Sbjct: 1 MFKKLNPEAKEFFP-SYKKNTNQSLSSDDF---------VIAKKPSGEDNKKDGINRRRR 50
Query: 232 KKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD 291
+ R+ R S AQRE IRRTVYVSDIDQ VTEE LA LF CGQVVDCRICGD
Sbjct: 51 NNYNQGRRVRLPGRASKAQREVSIRRTVYVSDIDQSVTEEVLAGLFSSCGQVVDCRICGD 110
Query: 292 PNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDERE 351
PNSVLRFAF+EF+D+ +GARAAL+L GTM+G+YPVRVLPSKTAI PVNPTFLPR+EDERE
Sbjct: 111 PNSVLRFAFVEFSDD-QGARAALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDERE 169
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
MC RTIYCTN+DK T+ VK FF+S CGEV RLRLLGD HSTRIAFVEF MAESA+AA
Sbjct: 170 MCTRTIYCTNVDKNATEDVVKTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAA 229
Query: 412 LNCSGVVLGSLPIRVS 427
LNCSG+VLGS PIR+S
Sbjct: 230 LNCSGIVLGSQPIRLS 245
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y ++ID+ VT+ + F S CG+V R+ GD + R AFVEF + A AAL+
Sbjct: 76 RTVYVSDIDQSVTEEVLAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARAALSL 134
Query: 415 SGVVLGSLPIRVSPSKTPVRPRAP 438
G ++G P+RV PSKT + P P
Sbjct: 135 GGTMIGYYPVRVLPSKTAILPVNP 158
>gi|226530673|ref|NP_001141946.1| uncharacterized protein LOC100274095 [Zea mays]
gi|194706550|gb|ACF87359.1| unknown [Zea mays]
gi|195626910|gb|ACG35285.1| CID11 [Zea mays]
gi|413947723|gb|AFW80372.1| CID11 [Zea mays]
Length = 302
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 169/290 (58%), Positives = 207/290 (71%), Gaps = 17/290 (5%)
Query: 161 DFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARN 220
+++ +++L +L S LNP A+EFVP S + + ++ +F+ +
Sbjct: 17 EYQAGVQKLVDLLSNLNPAAKEFVPSSAPAAAASPPKKA------LSADAPVFDYRSTAG 70
Query: 221 GNVNANAAV-------RRKKSFG---QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTE 270
GN + +RK+ G QG+RR N R A RE+ +RRTVYVS++D VTE
Sbjct: 71 GNGATDDPFYVGFGNQQRKRGNGYINQGRRRTNDRLRRADREDSVRRTVYVSELDHTVTE 130
Query: 271 EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330
E+LA +F CG VVDCRICGDP+SVLRFAFIEF+DE EGAR ALNL GT+ GFYPVRVLP
Sbjct: 131 ERLADIFATCGHVVDCRICGDPHSVLRFAFIEFSDE-EGARTALNLGGTIFGFYPVRVLP 189
Query: 331 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD 390
SKTAI PVNP FLPRT+DE+EM RT+YCTNIDK VTQ DVK FFE +CGEV RLRLLGD
Sbjct: 190 SKTAILPVNPKFLPRTDDEKEMVMRTVYCTNIDKMVTQLDVKKFFEELCGEVSRLRLLGD 249
Query: 391 YHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
HSTRIAFVEFV AE AI ALNCSG++LG+LP+RVSPSKTPV+PR R+
Sbjct: 250 NVHSTRIAFVEFVHAEGAIMALNCSGMILGTLPVRVSPSKTPVKPRVNRM 299
>gi|212274583|ref|NP_001130716.1| hypothetical protein [Zea mays]
gi|194689926|gb|ACF79047.1| unknown [Zea mays]
gi|413954111|gb|AFW86760.1| hypothetical protein ZEAMMB73_977651 [Zea mays]
Length = 365
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 172/317 (54%), Positives = 210/317 (66%), Gaps = 38/317 (11%)
Query: 161 DFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARN 220
+++ DMR+L+EL SKLNP AEEFVP S + + ++ F + + H+
Sbjct: 47 EYESDMRKLEELLSKLNPSAEEFVPQSRRRVDGGAPRLSADAPVFVSPAIDYYARHHQLP 106
Query: 221 GN------------------------------------VNANAAVRRKKSFGQGKRRM-N 243
N RR+ F QG+RRM
Sbjct: 107 PPPLLQQQQPMHVLQFVGGVGGVGMGGGGGMDSSSDGSANGQPNRRRRNGFIQGRRRMMG 166
Query: 244 SRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEF 303
+R A RE+ +RRTVYVSD+DQ VTE++LA +F CGQVVDCRICGDPNSVLRFAFIEF
Sbjct: 167 ARPRRADREDSVRRTVYVSDVDQHVTEQKLAEVFSTCGQVVDCRICGDPNSVLRFAFIEF 226
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNID 363
D+ A+AAL L GT+LGFYPV+VLPSKTAI PVNP FLP T+DE+EM +RT+YCTNID
Sbjct: 227 ADDVA-AQAALALGGTVLGFYPVKVLPSKTAILPVNPKFLPHTDDEKEMVSRTVYCTNID 285
Query: 364 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLP 423
KK+ + +VK FFE CGEV RLRLLGDY HST IAFVEFV A+SAI ALNCSG+VLG+LP
Sbjct: 286 KKIAEDEVKQFFEGTCGEVSRLRLLGDYVHSTCIAFVEFVQADSAILALNCSGIVLGTLP 345
Query: 424 IRVSPSKTPVRPRAPRL 440
+RVSPSKTPVR R+PR+
Sbjct: 346 VRVSPSKTPVRSRSPRV 362
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV 403
PR D + RT+Y +++D+ VT+ + F S CG+V R+ GD + R AF+EF
Sbjct: 169 PRRADREDSVRRTVYVSDVDQHVTEQKLAEVF-STCGQVVDCRICGDPNSVLRFAFIEFA 227
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
+A AAL G VLG P++V PSKT + P P+ H
Sbjct: 228 DDVAAQAALALGGTVLGFYPVKVLPSKTAILPVNPKFLPH 267
>gi|62867578|emb|CAI84654.1| hypothetical protein [Nicotiana tabacum]
Length = 201
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 156/202 (77%), Positives = 172/202 (85%), Gaps = 1/202 (0%)
Query: 242 MNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFI 301
MN+R AQRE+ IRRTVYV++ID VTEEQLAALF GQVVDCRICGDP+S LRFAF+
Sbjct: 1 MNNRAYKAQREDSIRRTVYVAEIDNNVTEEQLAALFSAYGQVVDCRICGDPHSRLRFAFV 60
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTN 361
EF DE ARAAL+L GT+LGF P++VLPSKTAI PVNPTFLPR+EDEREMCART+YCTN
Sbjct: 61 EFADEY-SARAALSLCGTILGFSPLKVLPSKTAILPVNPTFLPRSEDEREMCARTVYCTN 119
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGS 421
IDKKVTQADVK FFE+ CGEV RLRLLGD+ HSTRIAFVEFVMAESAI AL+C G +LGS
Sbjct: 120 IDKKVTQADVKNFFETRCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALDCCGEILGS 179
Query: 422 LPIRVSPSKTPVRPRAPRLPMH 443
IRVSPSKTPVRPR PR M
Sbjct: 180 QRIRVSPSKTPVRPRLPRAMMQ 201
>gi|8671859|gb|AAF78422.1|AC018748_1 Contains similarity to RNA-binding protein from Arabidopsis
thaliana gi|2129727 and contains RNA recognition
PF|00076 domain. ESTs gb|H37317, gb|F14415, gb|AA651290
come from this gene [Arabidopsis thaliana]
Length = 829
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 160/258 (62%), Positives = 186/258 (72%), Gaps = 20/258 (7%)
Query: 172 LFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 231
+F KLNP A+EF P TN ++ V +G N A+ R
Sbjct: 1 MFKKLNPEAKEFFPSYKRNTNQSDDFVIAIK----------------PSGEDNKKVAINR 44
Query: 232 KKSFGQGKR---RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRI 288
++ + R+ R S AQRE+ IRRTVYVSDIDQ VTEE LA LF CGQVVDCRI
Sbjct: 45 RRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRI 104
Query: 289 CGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTED 348
CGDPNSVLRFAF+EF+D+ +GAR+AL+L GTM+G+YPVRVLPSKTAI PVNPTFLPR+ED
Sbjct: 105 CGDPNSVLRFAFVEFSDD-QGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSED 163
Query: 349 EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA 408
EREMC+RTIYCTN+DK T+ DV FF+S CGEV RLRLLGD HSTRIAFVEF MAESA
Sbjct: 164 EREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESA 223
Query: 409 IAALNCSGVVLGSLPIRV 426
+AALNCSG+VLGS PI V
Sbjct: 224 VAALNCSGIVLGSQPISV 241
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y ++ID+ VT+ + F S CG+V R+ GD + R AFVEF + A +AL+
Sbjct: 73 RTVYVSDIDQSVTEEGLAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSL 131
Query: 415 SGVVLGSLPIRVSPSKTPVRPRAP 438
G ++G P+RV PSKT + P P
Sbjct: 132 GGTMIGYYPVRVLPSKTAILPVNP 155
>gi|195626410|gb|ACG35035.1| CID11 [Zea mays]
Length = 378
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/315 (53%), Positives = 205/315 (65%), Gaps = 37/315 (11%)
Query: 162 FKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNG 221
+K D+++L+ L SKLNP A+EFVP S G + ++ +F + G
Sbjct: 62 YKSDLKKLENLMSKLNPSAQEFVPSSRRTAPAAVAAAKPAGGRVLSADAPVFVSAAEYYG 121
Query: 222 NVNANAAV-----------------------------------RRKKSFGQGKRRMNSRT 246
+ + RR+ SF G+RR
Sbjct: 122 AAGGHLEIGGGGGKVVVGGGGRDSSSDGSSNGGGGGSRHQPNRRRRNSFNHGRRRGAGGR 181
Query: 247 SLAQR-EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD 305
E+ +RRTVYVSDIDQ VTE++LA +F CG+VVDCRICGDP+SVLRFAFIEF+D
Sbjct: 182 PRRGDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGRVVDCRICGDPHSVLRFAFIEFSD 241
Query: 306 EAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK 365
+A GARAAL LAGT+LG YPVRVLPSKTAI PVNP FLP+T+DE+EM +RT+YCTNIDKK
Sbjct: 242 DA-GARAALTLAGTILGCYPVRVLPSKTAILPVNPKFLPQTDDEKEMVSRTVYCTNIDKK 300
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 425
VT+ DVK FF+ CG+V RLRLL D HST IAFVEF AESAI ALN SG+VLGSLPIR
Sbjct: 301 VTEEDVKGFFQQACGKVSRLRLLTDIVHSTCIAFVEFAQAESAIMALNFSGMVLGSLPIR 360
Query: 426 VSPSKTPVRPRAPRL 440
VSPSKTPVRPR+PR+
Sbjct: 361 VSPSKTPVRPRSPRV 375
>gi|212274823|ref|NP_001130545.1| uncharacterized protein LOC100191644 [Zea mays]
gi|194689440|gb|ACF78804.1| unknown [Zea mays]
gi|224030729|gb|ACN34440.1| unknown [Zea mays]
gi|413926010|gb|AFW65942.1| CID11 [Zea mays]
Length = 379
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 168/317 (52%), Positives = 204/317 (64%), Gaps = 39/317 (12%)
Query: 162 FKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNG 221
+K D+++L+ L SKLNP A+EFVP S G + ++ +F + G
Sbjct: 61 YKSDLKKLENLMSKLNPCAQEFVPSSRRTAPAAVAAAKPAGGRVLSADAPVFVSAAEYYG 120
Query: 222 NVNANAAV-------------------------------------RRKKSFGQGKRRMNS 244
+ + RR+ SF G+RR
Sbjct: 121 AAGGHLEIGGGGGGGKVVVGGGGRDSSSDGSSNGGGGGSRHQPNRRRRNSFNHGRRRGAG 180
Query: 245 RTSLAQR-EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEF 303
E+ +RRTVYVSDIDQ VTE++LA +F CG+VVDCRICGDP+SVLRFAFIEF
Sbjct: 181 GRPRRGDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGRVVDCRICGDPHSVLRFAFIEF 240
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNID 363
+D+ GARAAL LAGT+LG YPVRVLPSKTAI PVNP FLP+T+DE+EM +RT+YCTNID
Sbjct: 241 SDDG-GARAALTLAGTILGCYPVRVLPSKTAILPVNPKFLPQTDDEKEMVSRTVYCTNID 299
Query: 364 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLP 423
KKVT+ DVK FF+ CG+V RLRLL D HST IAFVEF AESAI ALN SG+VLGSLP
Sbjct: 300 KKVTEEDVKGFFQQACGKVSRLRLLTDIVHSTCIAFVEFAQAESAIMALNFSGMVLGSLP 359
Query: 424 IRVSPSKTPVRPRAPRL 440
IRVSPSKTPVRPR+PR+
Sbjct: 360 IRVSPSKTPVRPRSPRV 376
>gi|222635710|gb|EEE65842.1| hypothetical protein OsJ_21610 [Oryza sativa Japonica Group]
Length = 367
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 163/288 (56%), Positives = 198/288 (68%), Gaps = 26/288 (9%)
Query: 161 DFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHN--- 217
++K D R+L+ELF KLNP AEEFVP + + + + F + ++ F + +
Sbjct: 56 EYKSDARKLEELFKKLNPSAEEFVPLARRRGGGDGARRLSADAPVFVSPAIDFYSQHPVQ 115
Query: 218 ----------------------ARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEII 255
+ +G+ N RR+ SF QG+RRM R RE+ +
Sbjct: 116 QPPPIQVLPVVVGGGGGAGLDSSSDGSTNGQPNRRRRSSFNQGRRRMGGRPRRTDREDSV 175
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN 315
RRTVYVSDIDQ VTE++LA +F CGQVVDCRICGDPNSVLRFAFIEF D+ GARAAL
Sbjct: 176 RRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFAFIEFADDV-GARAALT 234
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L GT+LG+YPVRVLPSKTAI PVNP FLPRTEDE+EM +RT+YCTNIDK V + VK FF
Sbjct: 235 LGGTVLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNVPEDAVKSFF 294
Query: 376 ESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLP 423
E +CGEV RLRLLGDY HST IAFVEFV A+SAI AL+CSG+VLG+LP
Sbjct: 295 EGMCGEVARLRLLGDYVHSTCIAFVEFVQADSAILALSCSGMVLGALP 342
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 348 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAES 407
D + RT+Y ++ID+ VT+ + F S CG+V R+ GD + R AF+EF
Sbjct: 170 DREDSVRRTVYVSDIDQHVTEQKLAEVF-SNCGQVVDCRICGDPNSVLRFAFIEFADDVG 228
Query: 408 AIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
A AAL G VLG P+RV PSKT + P P+
Sbjct: 229 ARAALTLGGTVLGYYPVRVLPSKTAILPVNPKF 261
>gi|413921445|gb|AFW61377.1| hypothetical protein ZEAMMB73_448284 [Zea mays]
Length = 315
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 157/250 (62%), Positives = 180/250 (72%), Gaps = 26/250 (10%)
Query: 163 KRDMRELQELFSKLNPMAEEFVPPSLAKTNNN---NHG----------VNGF---NGGFF 206
+R+MR+L++L SKLNPMAEEFVPPSLA + HG GF N GF
Sbjct: 37 EREMRDLEDLLSKLNPMAEEFVPPSLASPISGAGAGHGALTPAPLSPAAYGFYPVNAGFA 96
Query: 207 ANN---------SLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR 257
+ + + H R + G+RR NSRTS+AQR+E IRR
Sbjct: 97 VASPGHRGVVSFPAVADAHAGRGMKKDGAGGFGGHGHGHPGRRRTNSRTSMAQRDEAIRR 156
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLA 317
TVYVSDID QVTEE LAALF+ CGQVVDCR+CGDPNSVLRFAFIEFTDE EGARAALNL+
Sbjct: 157 TVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDE-EGARAALNLS 215
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 377
GT+LG+YPV+VLPSKTAIAPVN TFLPR++DEREMCARTIYCTNIDKKVTQAD+KLFFES
Sbjct: 216 GTVLGYYPVKVLPSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFES 275
Query: 378 VCGEVYRLRL 387
+CGEV R L
Sbjct: 276 ICGEVGRSLL 285
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
E RT+Y ++ID +VT+ ++ F + CG+V R+ GD + R AF+EF E A A
Sbjct: 152 EAIRRTVYVSDIDHQVTEENLAALFIN-CGQVVDCRMCGDPNSVLRFAFIEFTDEEGARA 210
Query: 411 ALNCSGVVLGSLPIRVSPSKTPVRP 435
ALN SG VLG P++V PSKT + P
Sbjct: 211 ALNLSGTVLGYYPVKVLPSKTAIAP 235
>gi|147818437|emb|CAN60729.1| hypothetical protein VITISV_013180 [Vitis vinifera]
Length = 642
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/177 (77%), Positives = 155/177 (87%), Gaps = 1/177 (0%)
Query: 231 RKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG 290
R+ ++ QG+RR++ R AQRE+ IRRTVYVSDIDQ VTEE+LAALF CGQVVDCR+CG
Sbjct: 324 RRNNYNQGRRRLSGRAFRAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVVDCRVCG 383
Query: 291 DPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER 350
DP+SVLRFAF+EF DE GARAALNL GTMLG+YPVRVLPSKTAI PVNPTFLPR+EDER
Sbjct: 384 DPHSVLRFAFVEFADE-HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER 442
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAES 407
EMCART+YCTNIDKKV+QA+VK FFE CGEV RLRLLGD+ HSTRIAFVEF M +S
Sbjct: 443 EMCARTVYCTNIDKKVSQAEVKNFFERACGEVSRLRLLGDHVHSTRIAFVEFAMGQS 499
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y ++ID+ VT+ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 350 RTVYVSDIDQHVTEERLAALFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 408
Query: 415 SGVVLGSLPIRVSPSKTPVRPRAP 438
G +LG P+RV PSKT + P P
Sbjct: 409 GGTMLGYYPVRVLPSKTAILPVNP 432
>gi|224106628|ref|XP_002333653.1| predicted protein [Populus trichocarpa]
gi|222837945|gb|EEE76310.1| predicted protein [Populus trichocarpa]
Length = 158
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 134/158 (84%), Positives = 150/158 (94%), Gaps = 1/158 (0%)
Query: 248 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEA 307
+AQ+EEI+RRTVYVSDIDQQVTEEQLAALF+ CGQVVDCRICGDP SVLRFAFIEFTDE
Sbjct: 1 MAQQEEIVRRTVYVSDIDQQVTEEQLAALFINCGQVVDCRICGDPKSVLRFAFIEFTDE- 59
Query: 308 EGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367
EGA+AAL+L+GTMLG+YPV+VLPSKTAIAPVNPTFLPR +DEREMCARTIYCTNID+ +T
Sbjct: 60 EGAQAALSLSGTMLGYYPVKVLPSKTAIAPVNPTFLPRNDDEREMCARTIYCTNIDRNLT 119
Query: 368 QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMA 405
QA++KLFFES+CGEVY LRLLGD+HH TRIAFVEFVM
Sbjct: 120 QANIKLFFESLCGEVYHLRLLGDHHHPTRIAFVEFVMV 157
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 349 EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA 408
+ E+ RT+Y ++ID++VT+ + F + CG+V R+ GD R AF+EF E A
Sbjct: 4 QEEIVRRTVYVSDIDQQVTEEQLAALFIN-CGQVVDCRICGDPKSVLRFAFIEFTDEEGA 62
Query: 409 IAALNCSGVVLGSLPIRVSPSKTPVRPRAP 438
AAL+ SG +LG P++V PSKT + P P
Sbjct: 63 QAALSLSGTMLGYYPVKVLPSKTAIAPVNP 92
>gi|53793069|dbj|BAD54280.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|53793076|dbj|BAD54286.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 206
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 134/182 (73%), Positives = 151/182 (82%), Gaps = 1/182 (0%)
Query: 242 MNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFI 301
M R RE+ +RRTVYVSDIDQ VTE++LA +F CGQVVDCRICGDPNSVLRFAFI
Sbjct: 1 MGGRPRRTDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFAFI 60
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTN 361
EF D+ GARAAL L GT+LG+YPVRVLPSKTAI PVNP FLPRTEDE+EM +RT+YCTN
Sbjct: 61 EFADDV-GARAALTLGGTVLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTN 119
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGS 421
IDK V + VK FFE +CGEV RLRLLGDY HST IAFVEFV A+SAI AL+CSG+VLG+
Sbjct: 120 IDKNVPEDAVKSFFEGMCGEVARLRLLGDYVHSTCIAFVEFVQADSAILALSCSGMVLGA 179
Query: 422 LP 423
LP
Sbjct: 180 LP 181
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV 403
PR D + RT+Y ++ID+ VT+ + F S CG+V R+ GD + R AF+EF
Sbjct: 5 PRRTDREDSVRRTVYVSDIDQHVTEQKLAEVF-SNCGQVVDCRICGDPNSVLRFAFIEFA 63
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
A AAL G VLG P+RV PSKT + P P+
Sbjct: 64 DDVGARAALTLGGTVLGYYPVRVLPSKTAILPVNPKF 100
>gi|413941690|gb|AFW74339.1| hypothetical protein ZEAMMB73_453710 [Zea mays]
Length = 286
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 143/221 (64%), Positives = 165/221 (74%), Gaps = 19/221 (8%)
Query: 163 KRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHG-VNGFNGGFFANNSLIFNNHNARNG 221
+R+MR+L++L SKLNPMAEEFVPPSLA ++ GF+ + F + +G
Sbjct: 33 EREMRDLEDLLSKLNPMAEEFVPPSLASPAALTPAPLSPAAYGFYPAGAG-FAVASPGHG 91
Query: 222 NVNANAAVRRKKSF-------------GQG---KRRMNSRTSLAQREEIIRRTVYVSDID 265
V AV + G G +RR NSRTS+AQR+EIIRRTVYVSDID
Sbjct: 92 GVVGFPAVADAHAARGRKKGGAGGGFSGHGHPARRRTNSRTSMAQRDEIIRRTVYVSDID 151
Query: 266 QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYP 325
QVTEE LAALF+ CGQVVDCR+CGDPNSVLRFAFIEFTDE EGARAALNL+GT+LG+YP
Sbjct: 152 HQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDE-EGARAALNLSGTVLGYYP 210
Query: 326 VRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV 366
VRVLPSKTAIAPVNPTFLPR++DEREMCARTIYCTNIDKKV
Sbjct: 211 VRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKV 251
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
E+ RT+Y ++ID +VT+ ++ F + CG+V R+ GD + R AF+EF E A A
Sbjct: 139 EIIRRTVYVSDIDHQVTEENLAALFIN-CGQVVDCRMCGDPNSVLRFAFIEFTDEEGARA 197
Query: 411 ALNCSGVVLGSLPIRVSPSKTPVRPRAP 438
ALN SG VLG P+RV PSKT + P P
Sbjct: 198 ALNLSGTVLGYYPVRVLPSKTAIAPVNP 225
>gi|326508995|dbj|BAJ86890.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 169
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/170 (76%), Positives = 145/170 (85%), Gaps = 1/170 (0%)
Query: 274 AALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
A +F CGQVVDCRICGDPNSV+RFAFIEF D+ GARAAL L GT+LGFYPVRVLPSKT
Sbjct: 1 AEVFSNCGQVVDCRICGDPNSVMRFAFIEFADDV-GARAALALGGTVLGFYPVRVLPSKT 59
Query: 334 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHH 393
AI PVNP FLPRTEDE+EM +RT+YCTNIDK V + VK FFE +CGEV RLRLLGDY H
Sbjct: 60 AILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNVPEDVVKNFFEGICGEVARLRLLGDYVH 119
Query: 394 STRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
+T IAFVEFV AE AI ALNCSG++LGSLP+RVSPSKTPVRPR+PR+ H
Sbjct: 120 ATCIAFVEFVEAEGAILALNCSGMLLGSLPVRVSPSKTPVRPRSPRVVSH 169
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEAEGA 310
+E++ RTVY ++ID+ V E+ + F G CG+V R+ GD AF+EF EAEGA
Sbjct: 76 KEMVSRTVYCTNIDKNVPEDVVKNFFEGICGEVARLRLLGDYVHATCIAFVEFV-EAEGA 134
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNP 340
ALN +G +LG PVRV PSKT + P +P
Sbjct: 135 ILALNCSGMLLGSLPVRVSPSKTPVRPRSP 164
>gi|413916285|gb|AFW56217.1| hypothetical protein ZEAMMB73_723080 [Zea mays]
Length = 246
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/144 (87%), Positives = 135/144 (93%), Gaps = 5/144 (3%)
Query: 265 DQQ----VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTM 320
DQQ VTEE LAALF+ CGQVVDC +CGDPNSVLRF FIEFTDE EGARAALNL+GTM
Sbjct: 16 DQQIVFKVTEENLAALFINCGQVVDCHMCGDPNSVLRFTFIEFTDE-EGARAALNLSGTM 74
Query: 321 LGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG 380
LG+YPVRVLPSKTAIAPVNPTFLPR++DEREMCARTIYCTNIDKKVTQAD+KLFFES+CG
Sbjct: 75 LGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICG 134
Query: 381 EVYRLRLLGDYHHSTRIAFVEFVM 404
EV+RLRLLGDYHHSTRIAFVEFVM
Sbjct: 135 EVFRLRLLGDYHHSTRIAFVEFVM 158
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 365 KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPI 424
KVT+ ++ F + CG+V + GD + R F+EF E A AALN SG +LG P+
Sbjct: 22 KVTEENLAALFIN-CGQVVDCHMCGDPNSVLRFTFIEFTDEEGARAALNLSGTMLGYYPV 80
Query: 425 RVSPSKTPVRPRAP 438
RV PSKT + P P
Sbjct: 81 RVLPSKTAIAPVNP 94
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFT 304
E+ RT+Y ++ID++VT+ L F CG+V R+ GD + R AF+EF
Sbjct: 105 EMCARTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFV 157
>gi|159464635|ref|XP_001690547.1| RNA binding protein [Chlamydomonas reinhardtii]
gi|158280047|gb|EDP05806.1| RNA binding protein [Chlamydomonas reinhardtii]
Length = 464
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 127/199 (63%), Positives = 150/199 (75%), Gaps = 1/199 (0%)
Query: 236 GQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSV 295
G G++ + EE IRRTVY+S +D +TEE LAA F CG+++DCRICGDPNS
Sbjct: 174 GPGQQAQKKKRPQKGLEENIRRTVYISYVDCSLTEENLAAFFSDCGRILDCRICGDPNSA 233
Query: 296 LRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR 355
+RFAFIEF D E A AL G++LG P+RVLPSKTAI PVN +PR+ DE E C+R
Sbjct: 234 MRFAFIEFMD-VECAAKALEKTGSVLGNSPLRVLPSKTAIMPVNQELMPRSADEVERCSR 292
Query: 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCS 415
T+Y NIDKKV + DVK FFES+CG+V R+RLLGDY HSTRIAFVEF AE A+AALNCS
Sbjct: 293 TVYAANIDKKVDKNDVKAFFESLCGKVSRIRLLGDYAHSTRIAFVEFHHAEGALAALNCS 352
Query: 416 GVVLGSLPIRVSPSKTPVR 434
G +LGSLPIRVSPSKTPVR
Sbjct: 353 GALLGSLPIRVSPSKTPVR 371
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y + +D +T+ ++ FF S CG + R+ GD + + R AF+EF+ E A AL
Sbjct: 195 RTVYISYVDCSLTEENLAAFF-SDCGRILDCRICGDPNSAMRFAFIEFMDVECAAKALEK 253
Query: 415 SGVVLGSLPIRVSPSKTPVRP 435
+G VLG+ P+RV PSKT + P
Sbjct: 254 TGSVLGNSPLRVLPSKTAIMP 274
>gi|302830029|ref|XP_002946581.1| hypothetical protein VOLCADRAFT_56092 [Volvox carteri f.
nagariensis]
gi|300268327|gb|EFJ52508.1| hypothetical protein VOLCADRAFT_56092 [Volvox carteri f.
nagariensis]
Length = 238
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/183 (67%), Positives = 145/183 (79%), Gaps = 1/183 (0%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
EE I+RTVY+S +D +TEE LAA F CG++VDCRICGDPNS +RFAFIEF D E A
Sbjct: 12 EENIKRTVYISYVDCTLTEENLAAFFSDCGRIVDCRICGDPNSAMRFAFIEFAD-VEFAT 70
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AL G++LG P+RVLPSKTAI PVN +PR+ DE E C+RT+Y NIDKKV + DV
Sbjct: 71 KALEKTGSVLGKSPLRVLPSKTAIMPVNQELMPRSPDEVERCSRTVYAANIDKKVDKNDV 130
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
+ FFES+CG+V R+RLLGDY HSTRIAFVEF AE A+AALNCSG +LGSLPIRVSPSKT
Sbjct: 131 RAFFESLCGKVSRIRLLGDYAHSTRIAFVEFQHAEGALAALNCSGALLGSLPIRVSPSKT 190
Query: 432 PVR 434
PV+
Sbjct: 191 PVK 193
>gi|218201903|gb|EEC84330.1| hypothetical protein OsI_30837 [Oryza sativa Indica Group]
Length = 353
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 133/261 (50%), Positives = 165/261 (63%), Gaps = 20/261 (7%)
Query: 175 KLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKS 234
+LNP A EF + + + NG + H +R G+ N + R
Sbjct: 96 RLNPDAPEFTAAASIRRRRSPGSGNGISS----------TRHWSRRGSRNFSRQGRSAP- 144
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPN 293
+SR AQ+EE +RRT++VSDID VTE+ LA LF C VVDCRICGD +
Sbjct: 145 -------FSSRVRRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVVDCRICGDHS 197
Query: 294 SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMC 353
S LRFAFIEF DE++ A AAL+L G +LG P+RV PSKTAI PVNP+FLP++E EREMC
Sbjct: 198 SGLRFAFIEFQDESD-AYAALDLDGYVLGICPLRVSPSKTAIMPVNPSFLPQSEAEREMC 256
Query: 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413
+RTIYCTNIDK V D+K F E G+V+RL+LLGD H TRIAF+EF + AI ALN
Sbjct: 257 SRTIYCTNIDKSVNVTDLKYFCEEHFGQVFRLKLLGDDGHPTRIAFIEFAEVDGAINALN 316
Query: 414 CSGVVLGSLPIRVSPSKTPVR 434
SG+ PIRV PSKTP+R
Sbjct: 317 SSGIFASGQPIRVCPSKTPIR 337
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 51/94 (54%)
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
R + E RTI+ ++ID VT+ + F S C V R+ GD+ R AF+EF
Sbjct: 150 RRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVVDCRICGDHSSGLRFAFIEFQD 209
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAP 438
A AAL+ G VLG P+RVSPSKT + P P
Sbjct: 210 ESDAYAALDLDGYVLGICPLRVSPSKTAIMPVNP 243
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGC----GQVVDCRICGDPNSVLRFAFIE 302
S A+RE + RT+Y ++ID+ V L C GQV ++ GD R AFIE
Sbjct: 249 SEAERE-MCSRTIYCTNIDKSVNVTDLKYF---CEEHFGQVFRLKLLGDDGHPTRIAFIE 304
Query: 303 FTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPV 338
F E +GA ALN +G P+RV PSKT I V
Sbjct: 305 FA-EVDGAINALNSSGIFASGQPIRVCPSKTPIRSV 339
>gi|222641306|gb|EEE69438.1| hypothetical protein OsJ_28831 [Oryza sativa Japonica Group]
Length = 353
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 133/261 (50%), Positives = 165/261 (63%), Gaps = 20/261 (7%)
Query: 175 KLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKS 234
+LNP A EF + + + NG + H +R G+ N + R
Sbjct: 96 RLNPDAPEFTAAASIRRRRSPGSGNGISS----------TRHWSRRGSRNFSRQGRSAP- 144
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPN 293
+SR AQ+EE +RRT++VSDID VTE+ LA LF C VVDCRICGD +
Sbjct: 145 -------FSSRVRRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVVDCRICGDHS 197
Query: 294 SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMC 353
S LRFAFIEF DE++ A AAL+L G +LG P+RV PSKTAI PVNP+FLP++E EREMC
Sbjct: 198 SGLRFAFIEFQDESD-AYAALDLDGYVLGICPLRVSPSKTAIMPVNPSFLPQSEAEREMC 256
Query: 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413
+RTIYCTNIDK V D+K F E G+V+RL+LLGD H TRIAF+EF + AI ALN
Sbjct: 257 SRTIYCTNIDKSVNVTDLKYFCEEHFGQVFRLKLLGDDGHPTRIAFIEFAEVDGAINALN 316
Query: 414 CSGVVLGSLPIRVSPSKTPVR 434
SG+ PIRV PSKTP+R
Sbjct: 317 SSGIFASGQPIRVCPSKTPIR 337
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 51/94 (54%)
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
R + E RTI+ ++ID VT+ + F S C V R+ GD+ R AF+EF
Sbjct: 150 RRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVVDCRICGDHSSGLRFAFIEFQD 209
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAP 438
A AAL+ G VLG P+RVSPSKT + P P
Sbjct: 210 ESDAYAALDLDGYVLGICPLRVSPSKTAIMPVNP 243
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGC----GQVVDCRICGDPNSVLRFAFIE 302
S A+RE + RT+Y ++ID+ V L C GQV ++ GD R AFIE
Sbjct: 249 SEAERE-MCSRTIYCTNIDKSVNVTDLKYF---CEEHFGQVFRLKLLGDDGHPTRIAFIE 304
Query: 303 FTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPV 338
F E +GA ALN +G P+RV PSKT I V
Sbjct: 305 FA-EVDGAINALNSSGIFASGQPIRVCPSKTPIRSV 339
>gi|307105908|gb|EFN54155.1| hypothetical protein CHLNCDRAFT_13101, partial [Chlorella
variabilis]
Length = 187
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 112/183 (61%), Positives = 141/183 (77%), Gaps = 1/183 (0%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
EE +R TVY+SDI VTE QLAA F CGQ+VDCR+CGDPNS +RFAFIEF E + A+
Sbjct: 6 EEKVRCTVYISDISDTVTEAQLAAFFQDCGQLVDCRVCGDPNSSMRFAFIEFMQE-DSAQ 64
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AL +G MLG +P+RV PSKTAI PVN T+LPR+ +ERE+ ART++ NID+ V + +
Sbjct: 65 QALGKSGAMLGDFPIRVSPSKTAIVPVNNTYLPRSTEERELVARTVFVGNIDRVVEREQL 124
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
FF+++CG V ++RLLGD HS +IAF+EFV AESA AAL SG +LG+LP+RVSPSKT
Sbjct: 125 SEFFQNLCGPVSKIRLLGDSQHSAKIAFIEFVTAESARAALKLSGALLGTLPLRVSPSKT 184
Query: 432 PVR 434
PVR
Sbjct: 185 PVR 187
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
R +E+ C T+Y ++I VT+A + FF+ CG++ R+ GD + S R AF+EF+
Sbjct: 3 RRNEEKVRC--TVYISDISDTVTEAQLAAFFQD-CGQLVDCRVCGDPNSSMRFAFIEFMQ 59
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPVRP 435
+SA AL SG +LG PIRVSPSKT + P
Sbjct: 60 EDSAQQALGKSGAMLGDFPIRVSPSKTAIVP 90
>gi|388517685|gb|AFK46904.1| unknown [Lotus japonicus]
Length = 124
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/124 (85%), Positives = 119/124 (95%)
Query: 320 MLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVC 379
MLG+YP+RVLPSKTAIAPVNPTFLPR+EDEREMC+RTIYCTNIDKK+TQ+DVK FFES+C
Sbjct: 1 MLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQSDVKNFFESIC 60
Query: 380 GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
GEV RLRLLGD++HSTRIAFVEF +AESAIAAL+CSGV+LGSLPIRVSPSKTPVR R+PR
Sbjct: 61 GEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRSPR 120
Query: 440 LPMH 443
PMH
Sbjct: 121 SPMH 124
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
E+ RT+Y ++ID+++T+ + F CG+V R+ GD N R AF+EF AE A
Sbjct: 32 EMCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEF-KVAESAI 90
Query: 312 AALNLAGTMLGFYPVRVLPSKTAI 335
AAL+ +G +LG P+RV PSKT +
Sbjct: 91 AALSCSGVILGSLPIRVSPSKTPV 114
>gi|116789825|gb|ABK25401.1| unknown [Picea sitchensis]
Length = 124
Score = 226 bits (576), Expect = 2e-56, Method: Composition-based stats.
Identities = 104/124 (83%), Positives = 114/124 (91%)
Query: 320 MLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVC 379
MLG+YPVRVLPSKTAI PVNPTFLPR+EDEREMCARTIYCTNIDKKV+Q +V++FFES+C
Sbjct: 1 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQVEVRMFFESLC 60
Query: 380 GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
GEV RLRLLGD+ HSTRIAFVEFVMAESAI ALNCSG ++GSLPIRVSPSKTPVRPR P
Sbjct: 61 GEVSRLRLLGDHVHSTRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTPVRPRIPH 120
Query: 440 LPMH 443
MH
Sbjct: 121 PTMH 124
Score = 66.2 bits (160), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
E+ RT+Y ++ID++V++ ++ F CG+V R+ GD R AF+EF AE A
Sbjct: 32 EMCARTIYCTNIDKKVSQVEVRMFFESLCGEVSRLRLLGDHVHSTRIAFVEFV-MAESAI 90
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNP 340
ALN +G ++G P+RV PSKT + P P
Sbjct: 91 LALNCSGAIVGSLPIRVSPSKTPVRPRIP 119
>gi|227204205|dbj|BAH56954.1| AT4G10610 [Arabidopsis thaliana]
Length = 206
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 132/220 (60%), Positives = 149/220 (67%), Gaps = 38/220 (17%)
Query: 106 MAVVESASQDSAVSSAGSI-------------PASNGQDHPKQNGGTMVMPLDQGLYNQ- 151
MAV+ES ++ V + G I AS+ DH GG G++++
Sbjct: 1 MAVIESVGANTTVEAGGLISPSPPSSVTSQESGASSNNDH----GGN-------GIHDEI 49
Query: 152 --NNQRSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFA-N 208
+ RS+GG FKRDMREL EL SKLNPMA+EF+PPSL K VNGFNGGFFA N
Sbjct: 50 GVHVARSDGGESFKRDMRELHELLSKLNPMAKEFIPPSLTKPV-----VNGFNGGFFAVN 104
Query: 209 NSLIFNNHNARNGNVNANAAVRRKKSFGQ-GKRRMNSRTSLAQREEIIRRTVYVSDIDQQ 267
N + A N VN + + RRKKSFGQ GKRRMN RTSLAQREEIIRRTVYVSDIDQQ
Sbjct: 105 NGFV----AAGNFPVNEDGSFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQ 160
Query: 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEA 307
VTEEQLA LF+G GQVVDCRICGDPNSVLRFAFIEFTDE
Sbjct: 161 VTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDEG 200
>gi|384248219|gb|EIE21704.1| hypothetical protein COCSUDRAFT_56895 [Coccomyxa subellipsoidea
C-169]
Length = 231
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 165/260 (63%), Gaps = 36/260 (13%)
Query: 175 KLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKS 234
+LNP A+EFVPP NGF + + +++ + +V+A
Sbjct: 5 RLNPGAKEFVPPG-----------NGFQ--------VSWQSYSFQKQDVSA--------- 36
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
G R S +R+ +++ VTE LA +F G++VDCR+CGDPNS
Sbjct: 37 --PGSLHTFQRQSRPRRKAALQK-----QFGGNVTEAALADVFKHSGKIVDCRVCGDPNS 89
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA 354
+RFAFIEF DE E + A+ L GTMLG +P+RV+PSKTAI PVN +FLPRT++E E CA
Sbjct: 90 AMRFAFIEFADE-EAIQRAIKLNGTMLGKFPIRVMPSKTAIVPVNNSFLPRTQEELERCA 148
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y NIDKKV + +V++FF+++CG V ++RLL DY+H + IAFVEF +SA AL+C
Sbjct: 149 RTVYIANIDKKVDREEVRVFFQTLCGPVTKIRLLSDYNHVSSIAFVEFADFKSARKALDC 208
Query: 415 SGVVLGSLPIRVSPSKTPVR 434
SG +LGSLPIRV+PSK PVR
Sbjct: 209 SGALLGSLPIRVTPSKAPVR 228
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 425
VT+A + F+ G++ R+ GD + + R AF+EF E+ A+ +G +LG PIR
Sbjct: 63 VTEAALADVFKH-SGKIVDCRVCGDPNSAMRFAFIEFADEEAIQRAIKLNGTMLGKFPIR 121
Query: 426 VSPSKTPVRP 435
V PSKT + P
Sbjct: 122 VMPSKTAIVP 131
>gi|384245723|gb|EIE19216.1| hypothetical protein COCSUDRAFT_38408 [Coccomyxa subellipsoidea
C-169]
Length = 200
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 129/175 (73%), Gaps = 1/175 (0%)
Query: 260 YVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGT 319
+ S Q+VTE LA +F G++VDCR+CGDPNS +RFAFIEF DE + A+ L G
Sbjct: 24 WQSPFHQKVTEASLADVFKDSGKIVDCRVCGDPNSAMRFAFIEFADE-RAVQQAIKLNGA 82
Query: 320 MLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVC 379
LG YP+RV+PSKTAI PVN +FLPRT+ E E CART+Y NIDK+V + DV+ FFE++C
Sbjct: 83 KLGKYPIRVMPSKTAIVPVNTSFLPRTQKELECCARTVYVANIDKRVDREDVRQFFETLC 142
Query: 380 GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVR 434
G V ++RLL DY+ + IAFVEF +SA AL+CSG +LG LPIRV+PSK PVR
Sbjct: 143 GPVKKIRLLSDYNKVSSIAFVEFAGFDSARKALDCSGALLGMLPIRVTPSKAPVR 197
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 85/196 (43%), Gaps = 41/196 (20%)
Query: 176 LNPMAEEFVPP-------------------SLAKTNNNNHGVNGFNGGFFANNSL----- 211
LNP A+EFVPP SLA ++ + N+++
Sbjct: 6 LNPSAKEFVPPGKGFQESWQSPFHQKVTEASLADVFKDSGKIVDCRVCGDPNSAMRFAFI 65
Query: 212 IFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLA----------QRE-EIIRRTVY 260
F + A + N A K R M S+T++ Q+E E RTVY
Sbjct: 66 EFADERAVQQAIKLNGAKLGKYPI----RVMPSKTAIVPVNTSFLPRTQKELECCARTVY 121
Query: 261 VSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGT 319
V++ID++V E + F CG V R+ D N V AF+EF + AR AL+ +G
Sbjct: 122 VANIDKRVDREDVRQFFETLCGPVKKIRLLSDYNKVSSIAFVEFAG-FDSARKALDCSGA 180
Query: 320 MLGFYPVRVLPSKTAI 335
+LG P+RV PSK +
Sbjct: 181 LLGMLPIRVTPSKAPV 196
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 364 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLP 423
+KVT+A + F+ G++ R+ GD + + R AF+EF + A+ +G LG P
Sbjct: 30 QKVTEASLADVFKD-SGKIVDCRVCGDPNSAMRFAFIEFADERAVQQAIKLNGAKLGKYP 88
Query: 424 IRVSPSKTPVRP 435
IRV PSKT + P
Sbjct: 89 IRVMPSKTAIVP 100
>gi|413954119|gb|AFW86768.1| hypothetical protein ZEAMMB73_327506 [Zea mays]
Length = 219
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/120 (82%), Positives = 111/120 (92%), Gaps = 1/120 (0%)
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
+VTEE LAALF+ CGQVVDCR+CGDPNSVLRFAFIEFTDE EGARAALNL+GT+LG+YP+
Sbjct: 39 EVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDE-EGARAALNLSGTVLGYYPI 97
Query: 327 RVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386
VL SKTAIAPVN TFLPR++DEREMCARTIYCTNIDKKVTQAD+KLFFES+CGE+ R
Sbjct: 98 NVLLSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICGELKVCR 157
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 365 KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPI 424
+VT+ ++ F + CG+V R+ GD + R AF+EF E A AALN SG VLG PI
Sbjct: 39 EVTEENLAALFIN-CGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGYYPI 97
Query: 425 RVSPSKTPVRP 435
V SKT + P
Sbjct: 98 NVLLSKTAIAP 108
>gi|413952071|gb|AFW84720.1| hypothetical protein ZEAMMB73_482719 [Zea mays]
Length = 625
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/116 (83%), Positives = 108/116 (93%), Gaps = 1/116 (0%)
Query: 266 QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYP 325
QVTEE LAALF+ GQVVDC +CGDPNSVL+FAFIEFTDE EGAR ALNL+GT+L +YP
Sbjct: 308 HQVTEENLAALFINYGQVVDCHMCGDPNSVLQFAFIEFTDE-EGARVALNLSGTVLRYYP 366
Query: 326 VRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGE 381
VRVLPSKTAIAPVNPTF+PR++DEREMCARTIYCTNIDKKVTQAD+KLFFES+CGE
Sbjct: 367 VRVLPSKTAIAPVNPTFVPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICGE 422
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 365 KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPI 424
+VT+ ++ F + G+V + GD + + AF+EF E A ALN SG VL P+
Sbjct: 309 QVTEENLAALFINY-GQVVDCHMCGDPNSVLQFAFIEFTDEEGARVALNLSGTVLRYYPV 367
Query: 425 RVSPSKTPVRPRAP 438
RV PSKT + P P
Sbjct: 368 RVLPSKTAIAPVNP 381
>gi|413943210|gb|AFW75859.1| putative ubiquitin-conjugating enzyme family [Zea mays]
Length = 699
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/142 (73%), Positives = 113/142 (79%), Gaps = 21/142 (14%)
Query: 263 DIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLG 322
D+ QVTEE LAALF+ CGQVVDCR+CGDPNSVLRF FIEFTDE EGARAALNL+GT+L
Sbjct: 482 DLFCQVTEENLAALFINCGQVVDCRMCGDPNSVLRFTFIEFTDE-EGARAALNLSGTVLR 540
Query: 323 FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEV 382
+YPV VLPSKT IAPVNPTFLPR VTQAD+KLFFES+CGEV
Sbjct: 541 YYPVSVLPSKTVIAPVNPTFLPR--------------------VTQADLKLFFESICGEV 580
Query: 383 YRLRLLGDYHHSTRIAFVEFVM 404
+RLRLLGDYHHSTRIAFVEFVM
Sbjct: 581 FRLRLLGDYHHSTRIAFVEFVM 602
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 365 KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPI 424
+VT+ ++ F + CG+V R+ GD + R F+EF E A AALN SG VL P+
Sbjct: 486 QVTEENLAALFIN-CGQVVDCRMCGDPNSVLRFTFIEFTDEEGARAALNLSGTVLRYYPV 544
Query: 425 RVSPSKTPVRPRAP 438
V PSKT + P P
Sbjct: 545 SVLPSKTVIAPVNP 558
>gi|414884994|tpg|DAA61008.1| TPA: hypothetical protein ZEAMMB73_630517 [Zea mays]
Length = 295
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 127/188 (67%), Gaps = 3/188 (1%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDE 306
+Q +E ++RT++V ID VTE+ LA LF G VVDCRICGDP S LRF F+E E
Sbjct: 100 SQWDETVKRTIFVKYIDHNVTEDILACLFQLFGTVVDCRICGDPTSDDGLRFGFVELQHE 159
Query: 307 AEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV 366
E A A+L+L G ++ P+ V S+TAI P+NP FLP++E E E C RTIYCTNI K V
Sbjct: 160 DE-AIASLDLDGYIISVSPLSVSRSRTAICPINPKFLPQSEAEWETCLRTIYCTNISKNV 218
Query: 367 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
T ++++ F E+ G+V R+RLL + ST IAF+EFV AIAAL G+ + +PIR+
Sbjct: 219 TSSNLRSFCEAYFGKVCRVRLLDNKERSTNIAFIEFVEVYGAIAALGSGGIYVDGVPIRM 278
Query: 427 SPSKTPVR 434
PSK+P+R
Sbjct: 279 CPSKSPIR 286
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 340 PTFLPRTEDER-EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTR 396
PTF + E RTI+ ID VT+ + F+ + G V R+ GD R
Sbjct: 92 PTFFKSHRSQWDETVKRTIFVKYIDHNVTEDILACLFQ-LFGTVVDCRICGDPTSDDGLR 150
Query: 397 IAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
FVE + AIA+L+ G ++ P+ VS S+T + P P+
Sbjct: 151 FGFVELQHEDEAIASLDLDGYIISVSPLSVSRSRTAICPINPKF 194
>gi|413922754|gb|AFW62686.1| hypothetical protein ZEAMMB73_396388 [Zea mays]
Length = 279
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/155 (61%), Positives = 109/155 (70%), Gaps = 18/155 (11%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
RM+SR + R +YV VTEE L ALF+ CGQVVDC +CGDPN VL
Sbjct: 72 RMSSRCVITCR-------LYVQG--WMVTEENLVALFINCGQVVDCHMCGDPNLVLSLLT 122
Query: 301 ---------IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDERE 351
++ D EGARAALNL+GT+LG+YPV VLPSKTAIAPVN TFLPR+ DE E
Sbjct: 123 LCNGSTIYGVKNIDVPEGARAALNLSGTVLGYYPVNVLPSKTAIAPVNETFLPRSNDEHE 182
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386
MCARTIYCTNIDKKVTQAD+KLFFES+CGE+ R
Sbjct: 183 MCARTIYCTNIDKKVTQADLKLFFESICGELKVCR 217
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 371 VKLFFESVCGEVYRLRLLGD----------YHHSTRIAFVEFVMAESAIAALNCSGVVLG 420
V LF CG+V + GD + ST + E A AALN SG VLG
Sbjct: 96 VALFIN--CGQVVDCHMCGDPNLVLSLLTLCNGSTIYGVKNIDVPEGARAALNLSGTVLG 153
Query: 421 SLPIRVSPSKTPVRP 435
P+ V PSKT + P
Sbjct: 154 YYPVNVLPSKTAIAP 168
>gi|414884567|tpg|DAA60581.1| TPA: hypothetical protein ZEAMMB73_957971 [Zea mays]
Length = 296
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/105 (80%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Query: 282 QVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 341
VVDCR+CGDPNSVLRFAFIEF DE EGARAA NL+ T+LG+YPV VLPSKTAIAPVN T
Sbjct: 131 HVVDCRMCGDPNSVLRFAFIEFADE-EGARAAPNLSRTVLGYYPVNVLPSKTAIAPVNET 189
Query: 342 FLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386
FLPR++DEREMCA TIYCTNIDKKVTQAD+ LFFES+CGE+ R
Sbjct: 190 FLPRSDDEREMCASTIYCTNIDKKVTQADLNLFFESICGELKVCR 234
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%)
Query: 373 LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 432
+F + V R+ GD + R AF+EF E A AA N S VLG P+ V PSKT
Sbjct: 123 VFHLHISPHVVDCRMCGDPNSVLRFAFIEFADEEGARAAPNLSRTVLGYYPVNVLPSKTA 182
Query: 433 VRP 435
+ P
Sbjct: 183 IAP 185
>gi|50726388|dbj|BAD33999.1| RNA-binding protein-like [Oryza sativa Japonica Group]
Length = 316
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 110/252 (43%), Positives = 139/252 (55%), Gaps = 40/252 (15%)
Query: 175 KLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKS 234
+LNP A EF + + + NG + H +R G+ N + R
Sbjct: 96 RLNPDAPEFTAAASIRRRRSPGSGNGISS----------TRHWSRRGSRNFSRQGRSAP- 144
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPN 293
+SR AQ+EE +RRT++VSDID VTE+ LA LF C VVDCRICGD +
Sbjct: 145 -------FSSRVRRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVVDCRICGDHS 197
Query: 294 SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMC 353
S LRFAFIEF DE++ A AAL+L G +LG P+RV PSKTAI PVNP+FLP
Sbjct: 198 SGLRFAFIEFQDESD-AYAALDLDGYVLGICPLRVSPSKTAIMPVNPSFLP--------- 247
Query: 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413
+V D+K F E G+V+RL+LLGD H TRIAF+EF + AI ALN
Sbjct: 248 -----------QVNVTDLKYFCEEHFGQVFRLKLLGDDGHPTRIAFIEFAEVDGAINALN 296
Query: 414 CSGVVLGSLPIR 425
SG+ PIR
Sbjct: 297 SSGIFASGQPIR 308
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 51/94 (54%)
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
R + E RTI+ ++ID VT+ + F S C V R+ GD+ R AF+EF
Sbjct: 150 RRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVVDCRICGDHSSGLRFAFIEFQD 209
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAP 438
A AAL+ G VLG P+RVSPSKT + P P
Sbjct: 210 ESDAYAALDLDGYVLGICPLRVSPSKTAIMPVNP 243
>gi|242044320|ref|XP_002460031.1| hypothetical protein SORBIDRAFT_02g021070 [Sorghum bicolor]
gi|241923408|gb|EER96552.1| hypothetical protein SORBIDRAFT_02g021070 [Sorghum bicolor]
Length = 288
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 129/224 (57%), Gaps = 26/224 (11%)
Query: 218 ARNGNVNANAAVRRKKSFGQGKRRMNS------RTSLAQREEIIRRTVYVSDIDQQVTEE 271
AR N A RR S ++ NS ++ +Q +E ++RT++V ID VTEE
Sbjct: 63 ARPNNSGTGRAARRPAS--NSRQDANSPRNAFFKSHRSQWDETVKRTIFVKYIDHTVTEE 120
Query: 272 QLAALFVGCGQVVDCRICGDPNSV-LRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330
LA +F G VVDCRICG P S LRF F+E E E A A+L+L G+++G V V
Sbjct: 121 TLACMFRLFGTVVDCRICGHPTSGGLRFGFVELRHEDE-ALASLDLDGSIIGISAVSVSR 179
Query: 331 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD 390
S+TAI P+NP FLP++E E E C RTIYCT+I K V RL+LL +
Sbjct: 180 SRTAICPINPKFLPQSEAEWETCLRTIYCTSISKIVC----------------RLKLLDN 223
Query: 391 YHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVR 434
ST IAF+EF + AIAAL G+ + +PIR+ PSK+P+R
Sbjct: 224 GERSTNIAFIEFAEVDGAIAALMSGGIYVDGIPIRMCPSKSPIR 267
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 336 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHST 395
+P N F E RTI+ ID VT+ + F + G V R+ G H T
Sbjct: 87 SPRNAFFKSHRSQWDETVKRTIFVKYIDHTVTEETLACMFR-LFGTVVDCRICG---HPT 142
Query: 396 ----RIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
R FVE + A+A+L+ G ++G + VS S+T + P P+
Sbjct: 143 SGGLRFGFVELRHEDEALASLDLDGSIIGISAVSVSRSRTAICPINPKF 191
>gi|290985874|ref|XP_002675650.1| predicted protein [Naegleria gruberi]
gi|284089247|gb|EFC42906.1| predicted protein [Naegleria gruberi]
Length = 422
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 118/190 (62%), Gaps = 6/190 (3%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAE 308
A+ ++ I+RT+YV+ ID Q+ E Q+ F CG++V+ R+CGD RFAF EF ++ E
Sbjct: 80 AEEDDKIKRTIYVTSIDTQILEAQVCEFFSYCGRIVNYRVCGDTQHPTRFAFFEF-EQKE 138
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTAIAPV-----NPTFLPRTEDEREMCARTIYCTNID 363
A+AA++L+G LG Y +R+L S+T I P N T + RT+Y N D
Sbjct: 139 SAQAAVSLSGQFLGRYALRILGSRTPIQPTPGAVGNGAVYSFTPAHHDQINRTVYVGNAD 198
Query: 364 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLP 423
+T+ D+K FF++ CG V ++ L GD HS R AFVEF+ ES AL CSG +LG+
Sbjct: 199 ISLTEDDLKEFFDANCGPVTKVVLAGDAVHSARFAFVEFLHMESRNKALECSGTLLGNRN 258
Query: 424 IRVSPSKTPV 433
IR++PS+TP+
Sbjct: 259 IRINPSRTPI 268
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 87/162 (53%), Gaps = 25/162 (15%)
Query: 297 RFAFIEFTDEAEGARAALNLAGT-MLGFY------------PVRVLPSKTAIAPVN---- 339
++AF+EF+ +E A+ A+ L+GT +LG + P V + T I+P +
Sbjct: 8 KYAFVEFS-SSEEAKVAIELSGTEILGKHLKISLSRSPISNPTPVQSNPTQISPTDDNAT 66
Query: 340 ------PTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHH 393
+ L R +E + RTIY T+ID ++ +A V FF S CG + R+ GD H
Sbjct: 67 KYQFLSESELKRKAEEDDKIKRTIYVTSIDTQILEAQVCEFF-SYCGRIVNYRVCGDTQH 125
Query: 394 STRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRP 435
TR AF EF ESA AA++ SG LG +R+ S+TP++P
Sbjct: 126 PTRFAFFEFEQKESAQAAVSLSGQFLGRYALRILGSRTPIQP 167
>gi|413918321|gb|AFW58253.1| hypothetical protein ZEAMMB73_482713 [Zea mays]
Length = 249
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/158 (55%), Positives = 100/158 (63%), Gaps = 39/158 (24%)
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
VTEE LAALF+ C QVVDCR+CGDPNSVLRFAFIEFTDE EGARAALNL+ T+LG+YPV
Sbjct: 31 MVTEENLAALFINCRQVVDCRMCGDPNSVLRFAFIEFTDE-EGARAALNLSRTVLGYYPV 89
Query: 327 RVLPSKTAIAPVNPTFLPR-----------------TEDEREMCARTI------------ 357
VLPSKTAIAPVN TFLPR +M ++ +
Sbjct: 90 NVLPSKTAIAPVNKTFLPRVCKPFGTNMLVLSSWLNVHALYDMVSKKVGRFSVLYSLTMN 149
Query: 358 -YCT--------NIDKKVTQADVKLFFESVCGEVYRLR 386
C NIDKKVTQAD+KLFFES+CGE+ R
Sbjct: 150 MKCVQGLSTAQINIDKKVTQADLKLFFESICGELKVCR 187
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 425
VT+ ++ F + C +V R+ GD + R AF+EF E A AALN S VLG P+
Sbjct: 32 VTEENLAALFIN-CRQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSRTVLGYYPVN 90
Query: 426 VSPSKTPVRP 435
V PSKT + P
Sbjct: 91 VLPSKTAIAP 100
>gi|413921446|gb|AFW61378.1| hypothetical protein ZEAMMB73_448284 [Zea mays]
Length = 206
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 104/169 (61%), Gaps = 25/169 (14%)
Query: 163 KRDMRELQELFSKLNPMAEEFVPPSLAKTNNN---NHG----------VNGF---NGGFF 206
+R+MR+L++L SKLNPMAEEFVPPSLA + HG GF N GF
Sbjct: 37 EREMRDLEDLLSKLNPMAEEFVPPSLASPISGAGAGHGALTPAPLSPAAYGFYPVNAGFA 96
Query: 207 ANN---------SLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR 257
+ + + H R + G+RR NSRTS+AQR+E IRR
Sbjct: 97 VASPGHRGVVSFPAVADAHAGRGMKKDGAGGFGGHGHGHPGRRRTNSRTSMAQRDEAIRR 156
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE 306
TVYVSDID QVTEE LAALF+ CGQVVDCR+CGDPNSVLRFAFIEFTDE
Sbjct: 157 TVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDE 205
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV 403
E RT+Y ++ID +VT+ ++ F + CG+V R+ GD + R AF+EF
Sbjct: 152 EAIRRTVYVSDIDHQVTEENLAALFIN-CGQVVDCRMCGDPNSVLRFAFIEFT 203
>gi|414878000|tpg|DAA55131.1| TPA: hypothetical protein ZEAMMB73_948686 [Zea mays]
Length = 237
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/116 (68%), Positives = 87/116 (75%), Gaps = 21/116 (18%)
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
VTEE LA LF+ CGQVVDCR+ GDPNSVLRFAF+EFTDE EGARAALNL+GT LG+YPV
Sbjct: 87 MVTEENLATLFINCGQVVDCRMRGDPNSVLRFAFVEFTDE-EGARAALNLSGTELGYYPV 145
Query: 327 RVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEV 382
VLPSKTAIAPVN TFLPR VTQAD+KLFFES+CGE+
Sbjct: 146 NVLPSKTAIAPVNETFLPR--------------------VTQADLKLFFESICGEI 181
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
C RT VT+ ++ F + CG+V R+ GD + R AFVEF E A AAL
Sbjct: 75 CVRTCRLYVQGWMVTEENLATLFIN-CGQVVDCRMRGDPNSVLRFAFVEFTDEEGARAAL 133
Query: 413 NCSGVVLGSLPIRVSPSKTPVRP 435
N SG LG P+ V PSKT + P
Sbjct: 134 NLSGTELGYYPVNVLPSKTAIAP 156
>gi|357153308|ref|XP_003576409.1| PREDICTED: uncharacterized protein LOC100831764 [Brachypodium
distachyon]
Length = 294
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 107/176 (60%), Gaps = 19/176 (10%)
Query: 269 TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEA-------------------EG 309
TE+ LA F CG VVDCRIC +P S FAFIEF A +
Sbjct: 93 TEKDLADRFRQCGAVVDCRICRNPRSEFLFAFIEFQYHANFEFHVKQNIKKQMLHPISDD 152
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
A AAL+L G +G V+V PS+TAI VNP+FL +++ E+EMC+RT+YCTNI+K VT A
Sbjct: 153 ASAALHLKGVTIGDRHVKVAPSRTAIMHVNPSFLAQSDGEKEMCSRTVYCTNIEKSVTCA 212
Query: 370 DVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 425
++ FF++ G V R+RLLGD +H T IAFVEF + IAAL G+ LPIR
Sbjct: 213 ELVGFFQAYFGSVSRVRLLGDDNHVTGIAFVEFAEVSADIAALRSIGIYARGLPIR 268
>gi|414884993|tpg|DAA61007.1| TPA: hypothetical protein ZEAMMB73_630517 [Zea mays]
Length = 317
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 116/216 (53%), Gaps = 47/216 (21%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQ-------------------------- 282
+Q +E ++RT++V ID VTE+ LA LF G
Sbjct: 110 SQWDETVKRTIFVKYIDHNVTEDILACLFQLFGTSYIVWDRKVNAYISTRWCIFFYITNR 169
Query: 283 --VVDCRICGDPNS--VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPV 338
VVDCRICGDP S LRF F+E E E A A+L+L G ++ P+ V S+TAI P+
Sbjct: 170 YTVVDCRICGDPTSDDGLRFGFVELQHEDE-AIASLDLDGYIISVSPLSVSRSRTAICPI 228
Query: 339 NPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIA 398
NP FLP++E E E C RTIYCTNI K V R+RLL + ST IA
Sbjct: 229 NPKFLPQSEAEWETCLRTIYCTNISKNVC----------------RVRLLDNKERSTNIA 272
Query: 399 FVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVR 434
F+EFV AIAAL G+ + +PIR+ PSK+P+R
Sbjct: 273 FIEFVEVYGAIAALGSGGIYVDGVPIRMCPSKSPIR 308
>gi|303278248|ref|XP_003058417.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459577|gb|EEH56872.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 187
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 107/183 (58%), Gaps = 1/183 (0%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
E + V+VS++ V+E LA +F GCG+V+DCR CGD +FAF+ F E
Sbjct: 6 EPTMWHNVHVSNVSLSVSESALARVFAGCGRVLDCRTCGDCGDKKKFAFVAFETSHE-VD 64
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AL L G ++ +RV SKTA+ PVNP LP +E + E C RT+Y +NID + D+
Sbjct: 65 QALTLDGFVVDGRAIRVTRSKTAVIPVNPGLLPTSEADVERCGRTVYVSNIDPTTSDDDL 124
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
K FE+ G + R L R AF+EF A SA++AL SG V+G+ +RV PSKT
Sbjct: 125 KRAFEANAGAIRRAHALSSSRRDARNAFIEFENASSAVSALGMSGRVIGARKVRVVPSKT 184
Query: 432 PVR 434
P++
Sbjct: 185 PLK 187
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 357 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSG 416
++ +N+ V+++ + F CG V R GD + AFV F + AL G
Sbjct: 13 VHVSNVSLSVSESALARVFAG-CGRVLDCRTCGDCGDKKKFAFVAFETSHEVDQALTLDG 71
Query: 417 VVLGSLPIRVSPSKTPVRPRAPRL 440
V+ IRV+ SKT V P P L
Sbjct: 72 FVVDGRAIRVTRSKTAVIPVNPGL 95
>gi|238008810|gb|ACR35440.1| unknown [Zea mays]
Length = 92
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 75/89 (84%)
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
M RT+YCTNIDK VTQ DVK FFE +CGEV RLRLLGD HSTRIAFVEFV AE AI A
Sbjct: 1 MVMRTVYCTNIDKMVTQLDVKKFFEELCGEVSRLRLLGDNVHSTRIAFVEFVHAEGAIMA 60
Query: 412 LNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
LNCSG++LG+LP+RVSPSKTPV+PR R+
Sbjct: 61 LNCSGMILGTLPVRVSPSKTPVKPRVNRM 89
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 254 IIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
++ RTVY ++ID+ VT+ + F CG+V R+ GD R AF+EF AEGA
Sbjct: 1 MVMRTVYCTNIDKMVTQLDVKKFFEELCGEVSRLRLLGDNVHSTRIAFVEFV-HAEGAIM 59
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAP 337
ALN +G +LG PVRV PSKT + P
Sbjct: 60 ALNCSGMILGTLPVRVSPSKTPVKP 84
>gi|145353373|ref|XP_001420989.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357398|ref|XP_001422906.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581225|gb|ABO99282.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583150|gb|ABP01265.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 183
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 109/184 (59%), Gaps = 2/184 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEAEGA 310
E+ + TV+V D+ V+E +LA +F CG+++DCR+CGD N+ +AF+ F + AE
Sbjct: 1 EKAVPYTVFVKDVPASVSERELADVFASCGRIIDCRMCGDANTHKFSYAFVAF-ECAEAV 59
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
AL L T L + V S TA+ PVNP LP+ E E E CARTIY N+DK V
Sbjct: 60 DRALLLDKTPLHGKNIMVKKSDTAVIPVNPLLLPQNEREVESCARTIYVANVDKTVDSHA 119
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
+KL FE G V RL L + +AFVEFV ES AL+ +G LG+ IRVS SK
Sbjct: 120 LKLLFEDRAGPVNRLHLQVKNNAVANVAFVEFVDLESVGTALHLTGEQLGNRMIRVSASK 179
Query: 431 TPVR 434
TP+R
Sbjct: 180 TPLR 183
>gi|413926011|gb|AFW65943.1| hypothetical protein ZEAMMB73_108884 [Zea mays]
Length = 92
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 75/89 (84%)
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
M +RT+YCTNIDKKVT+ DVK FF+ CG+V RLRLL D HST IAFVEF AESAI A
Sbjct: 1 MVSRTVYCTNIDKKVTEEDVKGFFQQACGKVSRLRLLTDIVHSTCIAFVEFAQAESAIMA 60
Query: 412 LNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
LN SG+VLGSLPIRVSPSKTPVRPR+PR+
Sbjct: 61 LNFSGMVLGSLPIRVSPSKTPVRPRSPRV 89
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 254 IIRRTVYVSDIDQQVTEEQLAALFV-GCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
++ RTVY ++ID++VTEE + F CG+V R+ D AF+EF +AE A
Sbjct: 1 MVSRTVYCTNIDKKVTEEDVKGFFQQACGKVSRLRLLTDIVHSTCIAFVEFA-QAESAIM 59
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNP 340
ALN +G +LG P+RV PSKT + P +P
Sbjct: 60 ALNFSGMVLGSLPIRVSPSKTPVRPRSP 87
>gi|308810827|ref|XP_003082722.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
gi|116061191|emb|CAL56579.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
Length = 650
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 123/229 (53%), Gaps = 8/229 (3%)
Query: 212 IFNNHNARNGNVNANAAVRRKKSFGQGKRR--MNSRTSLAQREEIIR---RTVYVSDIDQ 266
++ N R GN N + RR S G G R + R S++ R TV+V +I
Sbjct: 146 LYAGPNGRVGN-NMDNQWRRANSDGSGGGRHTYHGRHSVSDERAGGRGSPNTVFVKEIPA 204
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEAEGARAALNLAGTMLGFYP 325
V+E +LA F CG++VDCR+C D NS +AF+ F + A+ + AL+L L
Sbjct: 205 SVSERELAETFAACGRIVDCRMCRDANSNKFSYAFVAF-ETADEVQNALSLDKMSLHGKN 263
Query: 326 VRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL 385
+ V S TA+ PVNP LP+ E E E ARTIY N+DK V +K FFE G V RL
Sbjct: 264 IVVRRSDTAVIPVNPLLLPQNEAELESTARTIYVANVDKSVDSDALKTFFERHAGAVNRL 323
Query: 386 RLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVR 434
L +AFVEFV ESA ++L +G LG +RVS SKTP+R
Sbjct: 324 HLQVKNAADANVAFVEFVNLESAASSLRLTGKQLGQRVVRVSASKTPLR 372
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 29/193 (15%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAG 318
VY+S+I + ++ L A+F CG+V + + +P S +AF+EF D+AE A+ ALN G
Sbjct: 403 VYISNIPKNLSPGTLRAMFSECGRVTNVELLNNPKSKFPYAFVEF-DDAESAKRALNFRG 461
Query: 319 ---------TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
L + R + A+ PV + D+ E RT++ T+ID + +
Sbjct: 462 REVQGCAINIELTYNKKRRGAPRLALDPV-------SVDKME---RTVFVTDIDPDLEPS 511
Query: 370 DVKLFFESVCGEV----YRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLP 423
V+ FE CG V Y+ G+ +A++EF S AL+ C LG S
Sbjct: 512 FVRSKFEDECGPVTLFWYKAFEKGE---KQALAYIEFTELSSVEKALDQCRTHFLGESRL 568
Query: 424 IRVSPSKTPVRPR 436
I+V S TP+ P+
Sbjct: 569 IKVRHSHTPLVPK 581
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 91/210 (43%), Gaps = 31/210 (14%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-----CRICGDPNSVLRFAFIEFTDEA 307
E RT+YV+++D+ V + L F V+ + D N AF+EF +
Sbjct: 289 ESTARTIYVANVDKSVDSDALKTFFERHAGAVNRLHLQVKNAADAN----VAFVEFVN-L 343
Query: 308 EGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREM--------------- 352
E A ++L L G LG VRV SKT + VN R ++R M
Sbjct: 344 ESAASSLRLTGKQLGQRVVRVSASKTPLR-VNR----RMSEQRAMSYYASGTNGDAATPP 398
Query: 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
+Y +NI K ++ ++ F S CG V + LL + AFVEF AESA AL
Sbjct: 399 APTKVYISNIPKNLSPGTLRAMF-SECGRVTNVELLNNPKSKFPYAFVEFDDAESAKRAL 457
Query: 413 NCSGVVLGSLPIRVSPSKTPVRPRAPRLPM 442
N G + I + + R APRL +
Sbjct: 458 NFRGREVQGCAINIELTYNKKRRGAPRLAL 487
>gi|414876665|tpg|DAA53796.1| TPA: hypothetical protein ZEAMMB73_994570 [Zea mays]
Length = 266
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 81/124 (65%), Gaps = 17/124 (13%)
Query: 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR 327
VTEE LA LF+ CGQVV+CR+CGDPNSVLRFAFIEFTDE F P
Sbjct: 93 VTEENLATLFINCGQVVECRMCGDPNSVLRFAFIEFTDEVNET------------FLPRV 140
Query: 328 VLPSKTAIAPVNP-----TFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEV 382
PS T + ++ ++DEREMCARTIY TNIDKKVTQAD+KLFFES+CGE+
Sbjct: 141 CKPSGTNMLVLSSWLNVHALSDMSDDEREMCARTIYYTNIDKKVTQADLKLFFESICGEL 200
Query: 383 YRLR 386
R
Sbjct: 201 KVCR 204
>gi|414585783|tpg|DAA36354.1| TPA: hypothetical protein ZEAMMB73_057809 [Zea mays]
Length = 217
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/84 (75%), Positives = 70/84 (83%), Gaps = 1/84 (1%)
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTI 357
FAFIEF+DE EGAR ALNL GT+ GFYPVRVLPSKTA+ PVNP FLPRT+DE+EM RT+
Sbjct: 60 FAFIEFSDE-EGARTALNLGGTIFGFYPVRVLPSKTAMLPVNPKFLPRTDDEKEMVMRTV 118
Query: 358 YCTNIDKKVTQADVKLFFESVCGE 381
Y TNIDK VTQ DV FFE +CGE
Sbjct: 119 YRTNIDKMVTQLDVNKFFEELCGE 142
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 397 IAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
AF+EF E A ALN G + G P+RV PSKT + P P+
Sbjct: 60 FAFIEFSDEEGARTALNLGGTIFGFYPVRVLPSKTAMLPVNPKF 103
>gi|294460213|gb|ADE75689.1| unknown [Picea sitchensis]
Length = 79
Score = 126 bits (317), Expect = 2e-26, Method: Composition-based stats.
Identities = 58/77 (75%), Positives = 66/77 (85%), Gaps = 2/77 (2%)
Query: 320 MLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVC 379
MLG+YPVRVLPSKTAIAPVNPTFLPRTE+EREMCARTIYCTNIDKKV+Q+D+K FFE++C
Sbjct: 1 MLGYYPVRVLPSKTAIAPVNPTFLPRTEEEREMCARTIYCTNIDKKVSQSDLKAFFETLC 60
Query: 380 GEVYRL--RLLGDYHHS 394
G + RL Y HS
Sbjct: 61 GFSLEIAWRLSSFYSHS 77
>gi|413944598|gb|AFW77247.1| hypothetical protein ZEAMMB73_128485 [Zea mays]
Length = 331
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 64/76 (84%)
Query: 308 EGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367
+GAR ALNL GT+ GFYPVRVLPSKTAI PVNP FLPRT+DE+EM RT+Y TNIDK VT
Sbjct: 135 KGARTALNLGGTIFGFYPVRVLPSKTAILPVNPKFLPRTDDEKEMVMRTVYRTNIDKMVT 194
Query: 368 QADVKLFFESVCGEVY 383
Q DVK FFE +CGE+Y
Sbjct: 195 QLDVKKFFEELCGELY 210
>gi|224132620|ref|XP_002321367.1| predicted protein [Populus trichocarpa]
gi|222868363|gb|EEF05494.1| predicted protein [Populus trichocarpa]
Length = 74
Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/59 (88%), Positives = 57/59 (96%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
+EDERE+CARTIYCTNIDKK+TQADVKLFFES CGEV+RLRLLGDYHHSTRIAFVEF +
Sbjct: 2 SEDEREICARTIYCTNIDKKITQADVKLFFESFCGEVHRLRLLGDYHHSTRIAFVEFAV 60
Score = 43.1 bits (100), Expect = 0.32, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEF 303
EI RT+Y ++ID+++T+ + F CG+V R+ GD + R AF+EF
Sbjct: 7 EICARTIYCTNIDKKITQADVKLFFESFCGEVHRLRLLGDYHHSTRIAFVEF 58
>gi|413936264|gb|AFW70815.1| hypothetical protein ZEAMMB73_092717 [Zea mays]
Length = 271
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
++ I V+ I VTEE L LF+ CGQVVDCR+CGDPNSVLRFAFIEF DE EGAR
Sbjct: 86 QDHILSLVFHLHISPHVTEENLTTLFINCGQVVDCRMCGDPNSVLRFAFIEFADE-EGAR 144
Query: 312 AALNLAGTMLGFYPVRVLPSK 332
AALNL+GT+LG+YPV VLPSK
Sbjct: 145 AALNLSGTVLGYYPVNVLPSK 165
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
R D+++ ++ +I VT+ ++ F + CG+V R+ GD + R AF+EF
Sbjct: 81 RYLDDQDHILSLVFHLHISPHVTEENLTTLFIN-CGQVVDCRMCGDPNSVLRFAFIEFAD 139
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPVR 434
E A AALN SG VLG P+ V PSK P+
Sbjct: 140 EEGARAALNLSGTVLGYYPVNVLPSKLPLH 169
>gi|440801206|gb|ELR22227.1| RNAbinding protein, putative [Acanthamoeba castellanii str. Neff]
Length = 533
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 105/204 (51%), Gaps = 37/204 (18%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALNL 316
TVYV+ +D Q+ EE + LF CG V + R+CG+ N RFAF+EF+ E A A+ L
Sbjct: 164 TVYVTGVDTQLREEHVIQLFSLCGTVTNIRMCGETENKATRFAFVEFSTR-ESALMAMGL 222
Query: 317 AGTMLGFYPVRVLPSKTAI--------------------------APVNPTFLPRTEDER 350
+LG P++V+PSKTAI A +PT+ +
Sbjct: 223 TNIVLGNAPIKVMPSKTAIQAGSRGGGGGPGGGGGPRPPHHAHAAAAFDPTY-------Q 275
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAI 409
E +RT+Y +D +++A++ F S G V +L + GD H R AFVEF A
Sbjct: 276 ERASRTLYVGGVDSNLSEAELLQMF-SGFGTVTKLAMAGDTTVHQARFAFVEFSTVAEAH 334
Query: 410 AALNCSGVVLGSLPIRVSPSKTPV 433
AL +G V+G PIRVS SKTP+
Sbjct: 335 MALAMNGTVVGERPIRVSQSKTPI 358
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 104/234 (44%), Gaps = 59/234 (25%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN 315
+RTVYV I + E L F C ++ R+ GDP+ RF FIEF EGA+ A N
Sbjct: 13 QRTVYVGCIPSNLNSETLGHFFSTCDTIIQIRLAGDPSYSTRFGFIEFATP-EGAQRACN 71
Query: 316 LAGTMLGFYPVRVLPSKTAI---------------------------------------- 335
+ G L +R+ SKTAI
Sbjct: 72 MNGVELDGKKLRITLSKTAISSTSSHSGHSAHSAQSDASSAYASAAAGHMGLHAYGAAYG 131
Query: 336 -------------APVNPTFLP-RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGE 381
A + P + P ++R C T+Y T +D ++ + V F S+CG
Sbjct: 132 MGYGAQGGMPYMHAGMPPAYAPAHGSNDRVAC--TVYVTGVDTQLREEHVIQLF-SLCGT 188
Query: 382 VYRLRLLGDYHH-STRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVR 434
V +R+ G+ + +TR AFVEF ESA+ A+ + +VLG+ PI+V PSKT ++
Sbjct: 189 VTNIRMCGETENKATRFAFVEFSTRESALMAMGLTNIVLGNAPIKVMPSKTAIQ 242
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGA 310
+E RT+YV +D ++E +L +F G G V + GD RFAF+EF+ AE A
Sbjct: 275 QERASRTLYVGGVDSNLSEAELLQMFSGFGTVTKLAMAGDTTVHQARFAFVEFSTVAE-A 333
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAI 335
AL + GT++G P+RV SKT I
Sbjct: 334 HMALAMNGTVVGERPIRVSQSKTPI 358
>gi|413954118|gb|AFW86767.1| hypothetical protein ZEAMMB73_327506, partial [Zea mays]
Length = 81
Score = 114 bits (284), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/62 (82%), Positives = 57/62 (91%)
Query: 305 DEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDK 364
D EGARAALNL+GT+LG+YP+ VL SKTAIAPVN TFLPR++DEREMCARTIYCTNIDK
Sbjct: 11 DVPEGARAALNLSGTVLGYYPINVLLSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDK 70
Query: 365 KV 366
KV
Sbjct: 71 KV 72
>gi|290997908|ref|XP_002681523.1| predicted protein [Naegleria gruberi]
gi|284095147|gb|EFC48779.1| predicted protein [Naegleria gruberi]
Length = 408
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 112/202 (55%), Gaps = 15/202 (7%)
Query: 244 SRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC------GDPNSVL- 296
S +S+ RT+++S ID +E++L F G + + R+C + N+ L
Sbjct: 192 SNSSIVDANSAASRTIHISGIDSSFSEDELLDYFSVYGDITNYRLCNNDQQSSNSNTQLQ 251
Query: 297 -RFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAI-APVNPTFLPRTEDEREMCA 354
+FAFIE+ + +A + + G++ G ++V SKTAI P + + + R++
Sbjct: 252 TKFAFIEYATTEQSLKAIM-VNGSLWGKSKLKVSHSKTAIQTPPKKSLIDK--QYRDLVE 308
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN 413
RTI+ ID K++Q VK FFE +CG ++R+ + GD + TR F+EF +S + AL
Sbjct: 309 RTIHVGGIDVKLSQDHVKAFFEELCGAIHRIAMAGDTESYETRFCFIEFEDKQSTLRALR 368
Query: 414 CSG-VVLGSLP-IRVSPSKTPV 433
SG + GS+ I+VSPSK+P+
Sbjct: 369 LSGCTIAGSVKQIKVSPSKSPI 390
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
RT+++ +I T E L LF GQV + ++ GDP+ RFAF+EF D + A+ +L+L
Sbjct: 33 RTIHIGNISSYTTVESLQLLFSKYGQVTNIKLAGDPSYAKRFAFVEFVDHHQ-AKLSLSL 91
Query: 317 AGT 319
GT
Sbjct: 92 DGT 94
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
PS + ++P D +RTI+ + ID ++ ++ +F SV G++ RL
Sbjct: 180 PSSLYLGGLSPISNSSIVDANSAASRTIHISGIDSSFSEDELLDYF-SVYGDITNYRLCN 238
Query: 390 DYHHS--------TRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVR 434
+ S T+ AF+E+ E ++ A+ +G + G ++VS SKT ++
Sbjct: 239 NDQQSSNSNTQLQTKFAFIEYATTEQSLKAIMVNGSLWGKSKLKVSHSKTAIQ 291
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
+RTI+ NI T ++L F S G+V ++L GD ++ R AFVEFV A +L
Sbjct: 31 TSRTIHIGNISSYTTVESLQLLF-SKYGQVTNIKLAGDPSYAKRFAFVEFVDHHQAKLSL 89
Query: 413 NCSGVVLGSLPIRVSPSK 430
+ G +++S +K
Sbjct: 90 SLDGTEFMGQNLKISMAK 107
>gi|255079476|ref|XP_002503318.1| predicted protein [Micromonas sp. RCC299]
gi|226518584|gb|ACO64576.1| predicted protein [Micromonas sp. RCC299]
Length = 144
Score = 98.2 bits (243), Expect = 8e-18, Method: Composition-based stats.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 16/145 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--------------NSVLRFAFIEF 303
TVYV +I +E + F CG V +CR+ DP N R AF+ F
Sbjct: 1 TVYVREIPAGASEADVHDHFYTCGAVRECRVSADPHPPSKTDAGAGPDTNKKTRVAFVAF 60
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNID 363
E R AL + G++L P++V+PS+T + PVNP LPRTE+ERE CART+Y +N+D
Sbjct: 61 ETE-NAVREALTMDGSLLLGEPIQVMPSRTEVMPVNPGLLPRTEEERERCARTVYVSNVD 119
Query: 364 KKVTQADVKLFFESVC-GEVYRLRL 387
V +++ E++ G++ L L
Sbjct: 120 PDVRSNELRSALEAIADGKIAALHL 144
Score = 44.3 bits (103), Expect = 0.11, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--------------HSTRIAFVE 401
T+Y I ++ADV F + CG V R+ D H TR+AFV
Sbjct: 1 TVYVREIPAGASEADVHDHFYT-CGAVRECRVSADPHPPSKTDAGAGPDTNKKTRVAFVA 59
Query: 402 FVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
F + AL G +L PI+V PS+T V P P L
Sbjct: 60 FETENAVREALTMDGSLLLGEPIQVMPSRTEVMPVNPGL 98
>gi|224061487|ref|XP_002300504.1| predicted protein [Populus trichocarpa]
gi|222847762|gb|EEE85309.1| predicted protein [Populus trichocarpa]
Length = 155
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 89/150 (59%), Gaps = 24/150 (16%)
Query: 106 MAVVESASQDSAV--SSAGSIPASNGQDHPKQNGGTMVMPLDQGL----------YNQNN 153
MAV E+ S D + + +SN QDH N ++ PL + YN ++
Sbjct: 1 MAVGENVSVDLGNFRAESSVSSSSNDQDHHIHNNNVLIQPLYMKVFQVGHHQAPPYNHHH 60
Query: 154 Q-RSNGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNN----HGVNGFNGGFFAN 208
Q RSNGG +KR++RELQELFSKLNPMA EFVPPSL +NNN+ +G+NG NGGF+ N
Sbjct: 61 QQRSNGGESYKREIRELQELFSKLNPMAAEFVPPSL--SNNNSFGTVNGLNGVNGGFYGN 118
Query: 209 ----NSLIFN-NHNARNGNVNANAAVRRKK 233
N+L+ N N RNG VN NAA R K
Sbjct: 119 SSSSNNLVVNGNGFDRNGQVNGNAARRVKN 148
>gi|384249045|gb|EIE22527.1| hypothetical protein COCSUDRAFT_66269 [Coccomyxa subellipsoidea
C-169]
Length = 303
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 97/178 (54%), Gaps = 14/178 (7%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
RT+YV ++ ++V E L ALF CG V RI GDP+ R+AFIEFT E ++ A+ L
Sbjct: 6 RTIYVGNVGKEVDENALMALFGHCGTVTQIRIAGDPSYDTRYAFIEFTTPEE-SQTAMML 64
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNID-KKVTQADVKLFF 375
G M+ +RV ++ P + R+ D + RTI+ + ++++ + +F
Sbjct: 65 DGMMVFERQIRVNMARGGSGP----GVVRSNDP-DRVQRTIHIGGLPFDELSEESISDYF 119
Query: 376 ESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPV 433
++ GEV +R S R A+VEF ++A A++ G LGS ++VS SKTP+
Sbjct: 120 SNI-GEVNAVR------KSGRFAWVEFNTLQAAQTAMSLDGESLGSGTMKVSASKTPI 170
>gi|440795967|gb|ELR17076.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 347
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 43/217 (19%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLA 317
TV V++I TE+ L F CG +V + GD + ++AF+ F A+ A AAL L+
Sbjct: 39 TVIVTNISPLATEQDLRDFFANCGNIVQINLLGDGLGISQYAFVRFETMAQ-ANAALTLS 97
Query: 318 GTMLGFYPVRV-----------------------------------------LPSKTAIA 336
+ PV++ +P A+
Sbjct: 98 TGAVAGMPVKIVMAASDIPVGGAAAAATAALPTPLALTPGVGAASGLGLLGAIPHSLALL 157
Query: 337 PVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR 396
+P ++++ ARTIY N++ +T + FF ++CG + RL GD H +R
Sbjct: 158 SGSPANAQSYHEKQDEIARTIYVGNVNSTITSEQLMQFF-AICGPITFCRLAGDESHPSR 216
Query: 397 IAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPV 433
AF+EF E+A AA+ +G +L ++V+ SK P+
Sbjct: 217 FAFIEFATKEAAQAAMMLNGTMLLDRAVKVNHSKNPI 253
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE 306
S ++++ I RT+YV +++ +T EQL F CG + CR+ GD + RFAFIEF +
Sbjct: 166 SYHEKQDEIARTIYVGNVNSTITSEQLMQFFAICGPITFCRLAGDESHPSRFAFIEFATK 225
Query: 307 AEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTED 348
E A+AA+ L GTML V+V SK I V P P+T D
Sbjct: 226 -EAAQAAMMLNGTMLLDRAVKVNHSKNPI--VKP---PKTVD 261
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
P + PV P F T+ TNI T+ D++ FF + CG + ++ LLG
Sbjct: 23 PGSDGLLPVPPQF----------SVSTVIVTNISPLATEQDLRDFFAN-CGNIVQINLLG 71
Query: 390 DYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV--SPSKTPV 433
D ++ AFV F A AAL S + +P+++ + S PV
Sbjct: 72 DGLGISQYAFVRFETMAQANAALTLSTGAVAGMPVKIVMAASDIPV 117
>gi|328769388|gb|EGF79432.1| hypothetical protein BATDEDRAFT_35374 [Batrachochytrium
dendrobatidis JAM81]
Length = 555
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 99/199 (49%), Gaps = 34/199 (17%)
Query: 263 DIDQQVTEEQLAALFVGCGQVVDCRI--CGDPNSVLRFAFIEFTDEAEGARAALNLAGTM 320
++ +Q+TEE L F G +V + C + N +++ + ++F D +E A AL+L GT+
Sbjct: 22 NLSKQITEELLCQFFSFIGPIVSISLQPC-EANPLVQESLVQFQD-SEDAALALHLTGTV 79
Query: 321 LGFYPVRVLPSKTAI-----------APVNPT----FLP--------------RTEDERE 351
L + + P I P NPT +P T ++
Sbjct: 80 LADKALFITPPSAKIQSFNSHGYLNIPPPNPTAPGVLVPGSMAGSTIVPYGQTATIAGQD 139
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
RTIY NI ++Q +V + F S CG+V ++++ GD HSTR AF+EF +ESA A
Sbjct: 140 SVDRTIYTGNIHSGLSQQEVSMLFSS-CGDVTQVKMAGDATHSTRYAFIEFATSESAAMA 198
Query: 412 LNCSGVVLGSLPIRVSPSK 430
LN G+++ I+V+ SK
Sbjct: 199 LNLHGMMVAGRAIKVNRSK 217
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 245 RTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFT 304
+T+ ++ + RT+Y +I +++++++ LF CG V ++ GD R+AFIEF
Sbjct: 131 QTATIAGQDSVDRTIYTGNIHSGLSQQEVSMLFSSCGDVTQVKMAGDATHSTRYAFIEFA 190
Query: 305 DEAEGARAALNLAGTMLGFYPVRVLPSKTAIA 336
+E A ALNL G M+ ++V SK +I
Sbjct: 191 -TSESAAMALNLHGMMVAGRAIKVNRSKHSIG 221
>gi|156392403|ref|XP_001636038.1| predicted protein [Nematostella vectensis]
gi|156223137|gb|EDO43975.1| predicted protein [Nematostella vectensis]
Length = 686
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 8/145 (5%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAE 308
A + E IRRTV+V+++D ++T E L + F CG + R+ GD R+A+IEF E +
Sbjct: 153 ANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFA-ETQ 211
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQ 368
+AL +G + G P++V SK A++ P P+ D + C + KV
Sbjct: 212 AIVSALQYSGAIFGGKPIKVTHSKNAVS--KPP--PKHSDRKRACFGVFNGMGVQVKVLH 267
Query: 369 ADVKLFFESVCGEVYRLRLLGDYHH 393
A + SVC +Y++ L+G H
Sbjct: 268 A---RWLHSVCHCLYQMVLVGRTGH 289
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 57/237 (24%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVL---RFAFIEFTDEAEGARAA 313
+ + VS++ T EQL LF G+V D ++ + ++ + F++F D + A
Sbjct: 11 KLIQVSNVAHNATLEQLKVLFSFIGEVEDLKLFPESPAITVQSKVCFVKFVDPS-SVPIA 69
Query: 314 LNLAGTM-----LGFYPV------------RVLPSKTAIA----------PVNPTFLPR- 345
L+L T+ L PV +++ + +A+A P P +P+
Sbjct: 70 LHLTNTVFIDKSLIVVPVSDEPVSEEEKALQLVAASSALALGMGDGGGILPT-PALIPQL 128
Query: 346 -----------------------TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEV 382
++ E RT++ N+D ++T A++ L F S CG++
Sbjct: 129 MSSSGNTIAVPSSVPPPPPLTNVDANKVEEIRRTVFVNNLDPEIT-AEMLLSFFSSCGDI 187
Query: 383 YRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
+R+ GD TR A++EF ++ ++AL SG + G PI+V+ SK V P+
Sbjct: 188 KYIRMGGDDGKPTRYAYIEFAETQAIVSALQYSGAIFGGKPIKVTHSKNAVSKPPPK 244
>gi|428166786|gb|EKX35755.1| hypothetical protein GUITHDRAFT_118030 [Guillardia theta CCMP2712]
Length = 254
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 335 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHS 394
I P P E C TIY N++ +T + FF +VCG+V +R+ GD +
Sbjct: 2 IGPYGPNHTAALLAEGASC--TIYVGNLNPSITAEQLNQFFSAVCGQVLHVRMAGDDPAT 59
Query: 395 ------TRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP-VRPRA 437
TR AFV+F+ E A A+ SG +LG LPI+ P+K P V+PR+
Sbjct: 60 AFRFDRTRFAFVQFLSKEQADIAMTLSGTILGGLPIKCGPAKNPIVQPRS 109
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 14/96 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGD-PNSVLRF-----AFIEFTDEAEGA 310
T+YV +++ +T EQL F CGQV+ R+ GD P + RF AF++F + E A
Sbjct: 21 TIYVGNLNPSITAEQLNQFFSAVCGQVLHVRMAGDDPATAFRFDRTRFAFVQFLSK-EQA 79
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT 346
A+ L+GT+LG P++ P+K NP PR+
Sbjct: 80 DIAMTLSGTILGGLPIKCGPAK------NPIVQPRS 109
>gi|413944368|gb|AFW77017.1| hypothetical protein ZEAMMB73_226641 [Zea mays]
Length = 273
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 37/38 (97%)
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEV 382
+++DE EMCARTIYCTNIDKKVTQAD+KLFFES+CGE+
Sbjct: 178 QSDDECEMCARTIYCTNIDKKVTQADLKLFFESICGEI 215
>gi|255638879|gb|ACU19742.1| unknown [Glycine max]
Length = 179
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 49/70 (70%), Gaps = 6/70 (8%)
Query: 157 NGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHG-VNGFNGGF-FANNSLIFN 214
NGG FKRDMR+L+EL SKLNPMAEEFVPPSLA T HG + G N GF + NN ++ N
Sbjct: 89 NGGESFKRDMRDLEELLSKLNPMAEEFVPPSLANT----HGLLAGPNAGFGYTNNFILPN 144
Query: 215 NHNARNGNVN 224
N+ NG N
Sbjct: 145 NYGNTNGQTN 154
>gi|413941688|gb|AFW74337.1| hypothetical protein ZEAMMB73_453710 [Zea mays]
Length = 50
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/47 (80%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Query: 397 IAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
I F+ F AESA AALNCSGV+LGSLPIRVSPSKTPVRPRAPR MH
Sbjct: 5 ICFLIF-QAESATAALNCSGVILGSLPIRVSPSKTPVRPRAPRQLMH 50
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNP 340
F+ F +AE A AALN +G +LG P+RV PSKT + P P
Sbjct: 5 ICFLIF--QAESATAALNCSGVILGSLPIRVSPSKTPVRPRAP 45
>gi|414884540|tpg|DAA60554.1| TPA: hypothetical protein ZEAMMB73_865049 [Zea mays]
Length = 401
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 37/41 (90%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386
++DEREMCARTIY TNIDKKVTQAD+KLFFES+CGE+ R
Sbjct: 299 SDDEREMCARTIYRTNIDKKVTQADLKLFFESICGELKVCR 339
>gi|414584705|tpg|DAA35276.1| TPA: hypothetical protein ZEAMMB73_072205 [Zea mays]
Length = 364
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 36/42 (85%)
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386
+++DEREMCARTIYCTNIDKKVTQ D KLFFES CGE+ R
Sbjct: 261 QSDDEREMCARTIYCTNIDKKVTQTDPKLFFESKCGELKVCR 302
>gi|224109734|ref|XP_002333211.1| predicted protein [Populus trichocarpa]
gi|222835117|gb|EEE73552.1| predicted protein [Populus trichocarpa]
Length = 50
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/41 (80%), Positives = 36/41 (87%)
Query: 399 FVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 439
F++ + AE AIAALNCSG VLGSLPIRVSPSKTPVRPR PR
Sbjct: 6 FLQLLQAEGAIAALNCSGAVLGSLPIRVSPSKTPVRPRIPR 46
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 306 EAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNP 340
+AEGA AALN +G +LG P+RV PSKT + P P
Sbjct: 11 QAEGAIAALNCSGAVLGSLPIRVSPSKTPVRPRIP 45
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 21/186 (11%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDE 306
A ++ + ++YV D++ VT+ QL LF GQVV R+C D NS L +A++ +++
Sbjct: 114 AAQQPLPTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNP 173
Query: 307 AEGARA--ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDK 364
+ ARA ALN A L P+RV+ S R R + I+ N+DK
Sbjct: 174 MDAARAMEALNFA--PLNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDK 219
Query: 365 KVTQADVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSL 422
+ + F S G + ++ + D S FV++ ESA +A+ + +G+++
Sbjct: 220 TIDNKTLHDTF-SAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDK 278
Query: 423 PIRVSP 428
P+ V P
Sbjct: 279 PVYVGP 284
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALN 315
+ +Y+ ++D +T++QL LF G++ C+I D N V + + F+ F+ E ++A
Sbjct: 404 QNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTE 463
Query: 316 LAGTMLGFYPVRV 328
+ G M+ P+ V
Sbjct: 464 MNGKMISGKPLYV 476
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 21/186 (11%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDE 306
A ++ + ++YV D++ VT+ QL LF GQVV R+C D NS L +A++ +++
Sbjct: 114 AAQQPLPTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNP 173
Query: 307 AEGARA--ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDK 364
+ ARA ALN A L P+RV+ S R R + I+ N+DK
Sbjct: 174 MDAARAMEALNFA--PLNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDK 219
Query: 365 KVTQADVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSL 422
+ + F S G + ++ + D S FV++ ESA +A+ + +G+++
Sbjct: 220 TIDNKTLHDTF-SAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDK 278
Query: 423 PIRVSP 428
P+ V P
Sbjct: 279 PVYVGP 284
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALN 315
+ +Y+ ++D +T++QL LF G++ C+I D N V + + F+ F+ E ++A
Sbjct: 404 QNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTE 463
Query: 316 LAGTMLGFYPVRV 328
+ G M+ P+ V
Sbjct: 464 MNGKMISGKPLYV 476
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 27/183 (14%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R + R+ I R++ V+V +D V ++L A F CG+V+ C++ D + +
Sbjct: 83 RVMFSIRDPIQRKSGMNNVFVKKLDTAVNAKELQAAFTKCGRVLSCKVALDSAGNSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA----R 355
F++F + A+GA+AAL + G+ LG V V P FL R +RE+ A R
Sbjct: 143 FVQF-ETADGAKAALEMDGSKLGDCEVVVAP-----------FLRRV--DREVMAAKSFR 188
Query: 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAES---AIAAL 412
IY N+ V +ADVK E+ G+V L L T+ A V F E+ AIAAL
Sbjct: 189 NIYIKNLKATVAEADVKTTVETF-GKVNSLFLSEHAPFPTKFALVAFEEHEAAVKAIAAL 247
Query: 413 NCS 415
N S
Sbjct: 248 NES 250
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 21/182 (11%)
Query: 254 IIRRTVYVSD--IDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
+ R +VYV D ID EE + LF VV ++C D L + ++ F A+
Sbjct: 5 VQRTSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTPADA 64
Query: 310 ARA--ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367
+ ALN G G +RV+ F R +R+ ++ +D V
Sbjct: 65 EKVIDALNYTGITPG-RQIRVM------------FSIRDPIQRKSGMNNVFVKKLDTAVN 111
Query: 368 QADVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
+++ F + CG V ++ L +S FV+F A+ A AAL G LG + V
Sbjct: 112 AKELQAAF-TKCGRVLSCKVALDSAGNSKGYGFVQFETADGAKAALEMDGSKLGDCEVVV 170
Query: 427 SP 428
+P
Sbjct: 171 AP 172
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
R +YV + +T+++L +F G++ C I +PN + FAF+ F D + A +
Sbjct: 289 RNLYVKHLPDDITDDRLREIFAPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRS 348
Query: 316 LAGTML 321
L G L
Sbjct: 349 LNGHSL 354
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 27/183 (14%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R + R+ + R++ V+V +D + ++L A F CG+V+ C++ D + +
Sbjct: 83 RVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA----R 355
F++F + AEGA+AAL++ G+ LG S+ +AP F+ R +RE+ A R
Sbjct: 143 FVQF-ETAEGAKAALDMNGSKLG-------DSEVVVAP----FVRRV--DREVMAAKSFR 188
Query: 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAES---AIAAL 412
IY NI T+ADVK E G+V L L T+ A V F E+ AIAAL
Sbjct: 189 NIYIKNIAAAATEADVKAAAEKF-GKVNSLFLSEHAPFPTKFALVAFEEHEAAVQAIAAL 247
Query: 413 NCS 415
N S
Sbjct: 248 NES 250
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 254 IIRRTVYVSD--IDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEF--TDEA 307
+ R +VYV D ID EE + LF VV ++C D L + ++ F T +A
Sbjct: 5 VQRTSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADA 64
Query: 308 EGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367
E ALN G G +RV+ F R +R+ ++ +D +
Sbjct: 65 EKVIDALNYTGIAPG-RQIRVM------------FSIRDPLQRKSGMNNVFVKKLDTAIN 111
Query: 368 QADVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
+++ F + CG V ++ L +S FV+F AE A AAL+ +G LG + V
Sbjct: 112 AKELQAAF-TKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAALDMNGSKLGDSEVVV 170
Query: 427 SP 428
+P
Sbjct: 171 AP 172
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
R +YV + +T+++L +F G++ C I +PN + FAF+ F D + A +
Sbjct: 289 RNLYVKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRS 348
Query: 316 LAGTML 321
L G L
Sbjct: 349 LNGQPL 354
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 27/183 (14%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R + R+ + R++ V+V +D + ++L A F CG+V+ C++ D + +
Sbjct: 83 RVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA----R 355
F++F + AEGA+AAL++ G+ LG S+ +AP F+ R +RE+ A R
Sbjct: 143 FVQF-ETAEGAKAALDMNGSKLG-------DSEVVVAP----FVRRV--DREVMAAKSFR 188
Query: 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAES---AIAAL 412
IY NI T+ADVK E G+V L L T+ A V F E+ AIAAL
Sbjct: 189 NIYIKNIAAAATEADVKAAAEKF-GKVNSLFLSEHAPFPTKFALVAFEEHEAAVQAIAAL 247
Query: 413 NCS 415
N S
Sbjct: 248 NES 250
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 254 IIRRTVYVSD--IDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEF--TDEA 307
+ R +VYV D ID EE + LF VV ++C D L + ++ F T +A
Sbjct: 5 VQRTSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADA 64
Query: 308 EGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367
E ALN G G +RV+ F R +R+ ++ +D +
Sbjct: 65 EKVIDALNYTGIAPGLQ-IRVM------------FSIRDPLQRKSGMNNVFVKKLDTAIN 111
Query: 368 QADVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
+++ F + CG V ++ L +S FV+F AE A AAL+ +G LG + V
Sbjct: 112 AKELQAAF-TKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAALDMNGSKLGDSEVVV 170
Query: 427 SP 428
+P
Sbjct: 171 AP 172
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
R +YV + +T+++L +F G++ C I +PN + FAF+ F D + A +
Sbjct: 289 RNLYVKHLPDDITDDKLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRS 348
Query: 316 LAGTML 321
L G L
Sbjct: 349 LNGQPL 354
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D++ VT+ QL LF GQVV R+C D NS L +A++ F++ + ARA
Sbjct: 38 SLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARAL-- 95
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
ML F P+ P + + +P+ R + I+ N+DK + + F
Sbjct: 96 ---EMLNFVPLNNKPIRVMYSNRDPS-------SRRSGSANIFIKNLDKTIDNKTLHDTF 145
Query: 376 ESVCGEVYRLRL-LGDYHHSTRIAFVEF---VMAESAIAALNCSGVVLGSLPIRVSP 428
S G + ++ D S FV++ A+SA+ +LN G+++ P+ V P
Sbjct: 146 -SAFGAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLN--GMLINDKPVYVGP 199
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALN 315
+ +Y+ ++D ++++QL LF G++ C++ D N V + + F+ F+ E ++A
Sbjct: 319 QNLYLKNLDDGISDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITE 378
Query: 316 LAGTMLGFYPVRV 328
+ G ML P+ V
Sbjct: 379 MNGKMLSGKPLYV 391
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 21/164 (12%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
V+V +D + ++L A F CG+V+ C++ D + + F++F + A+G +AAL +
Sbjct: 101 VFVKKLDTAINAKELQAAFSKCGRVLSCKVALDSAGNSKGYGFVQF-ETADGTKAALEMN 159
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA---RTIYCTNIDKKVTQADVKLF 374
G+ LG S+ +AP F+ R D M A R IY NI T+ADVK
Sbjct: 160 GSKLG-------DSEVVVAP----FVRRV-DREAMAAKSFRNIYIKNITASATEADVKAI 207
Query: 375 FESVCGEVYRLRLLGDYHHSTR---IAFVEFVMAESAIAALNCS 415
E G+V L L T+ +AF E A AIAALN S
Sbjct: 208 VEEF-GKVDSLFLSEHARFPTKFALVAFEEHQAAVQAIAALNES 250
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 21/180 (11%)
Query: 256 RRTVYVSD--IDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEF--TDEAEG 309
R +VYV D ID EE + LF VV ++C D L + ++ F T +AE
Sbjct: 7 RTSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEK 66
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
ALN G G +RV+ F R +R+ ++ +D +
Sbjct: 67 VIDALNYTGIAPG-RQIRVM------------FSIRDPLQRKSGMNNVFVKKLDTAINAK 113
Query: 370 DVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 428
+++ F S CG V ++ L +S FV+F A+ AAL +G LG + V+P
Sbjct: 114 ELQAAF-SKCGRVLSCKVALDSAGNSKGYGFVQFETADGTKAALEMNGSKLGDSEVVVAP 172
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
R +Y+ + +T+++L +F G++ C I +PN L+ FAF+ F D+ + A +
Sbjct: 289 RNLYIKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTLKGFAFVCFEDKQHASAALRS 348
Query: 316 LAGTML 321
L G L
Sbjct: 349 LNGHPL 354
>gi|340385705|ref|XP_003391349.1| PREDICTED: hypothetical protein LOC100639209, partial [Amphimedon
queenslandica]
Length = 358
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 332 KTAIAPVNPTFLPRTED----EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 387
++A APV P+ P T + + + RTIY N+ + V FF++ CGE+ +R+
Sbjct: 16 QSAAAPVLPSMPPITGNVDPSKIDEIRRTIYVGNLSSTLHADQVMNFFQT-CGEIKYVRM 74
Query: 388 LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPV 433
GD TR AFVEF ES AL +G + G PI+V+ SK +
Sbjct: 75 AGDETQPTRFAFVEFANPESVQVALQYNGAMFGDRPIKVNHSKNAI 120
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAAL 314
IRRT+YV ++ + +Q+ F CG++ R+ GD RFAF+EF + E + AL
Sbjct: 41 IRRTIYVGNLSSTLHADQVMNFFQTCGEIKYVRMAGDETQPTRFAFVEFAN-PESVQVAL 99
Query: 315 NLAGTMLGFYPVRVLPSKTAI 335
G M G P++V SK AI
Sbjct: 100 QYNGAMFGDRPIKVNHSKNAI 120
>gi|224112839|ref|XP_002316306.1| predicted protein [Populus trichocarpa]
gi|222865346|gb|EEF02477.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 7/177 (3%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQV--VDCRICGDPNSVLRFAFIEFTDEAEGA 310
E I VYV I TE+ + + F GCG + VDC D A I F EA A
Sbjct: 191 EDIADRVYVGGIPYYSTEDDIRSFFEGCGTITEVDCMTFPDSGKFRGIAIISFKTEA-AA 249
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
+ AL+L G+ +G + +++ P KT P F P + IY N+ +T+ D
Sbjct: 250 KRALDLDGSDMGGFYLKIQPYKTTKVNKEPNFAPGIVE----GYNRIYVGNLSWDITEDD 305
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427
+K FF R + + V+F +S + AL ++ PI++S
Sbjct: 306 LKKFFSDCKISSIRFGMDKETGEFRGYGHVDFSDNDSLVKALKLDQRIVCGRPIKIS 362
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
++ ++YV D+D VT+ QL LF GQVV RIC D S L + ++ F++ + A
Sbjct: 20 QLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAA 79
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
+A L T L P+R++ S R R+ A I+ N+D+ + D
Sbjct: 80 KAMDVLNFTPLNNKPIRIMYSH------------RDPSVRKSGAANIFIKNLDRAI---D 124
Query: 371 VKLFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
K ++ S+ G + ++ D ++ FV+F ESA +A++ +G++L P+ V
Sbjct: 125 HKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV 184
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 236 GQGKRRMNSRTSLAQR-EEIIRRTV--------YVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ ++ L +R E+ ++ TV Y+ ++D VT+E+L+ LF G V C
Sbjct: 276 GKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSC 335
Query: 287 RICGDPNSVLRFA-FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332
+I DP + R + F+ F+ E RA + G M+ P+ V P++
Sbjct: 336 KILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQ 382
>gi|326427350|gb|EGD72920.1| hypothetical protein PTSG_04652 [Salpingoeca sp. ATCC 50818]
Length = 976
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 20/193 (10%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGAR 311
E +RTV+V ++D V E+ L F CG + D R+ P+ + FA+IEF +++ A
Sbjct: 686 EAAQRTVFVKNLDFAVDEDMLQMFFKDCGAIRDIRLVRKPSGQSKGFAYIEFEEKSSLA- 744
Query: 312 AALNLAGTMLGFYPVRVLP----SKTAIAPVNPT-FLPRTEDEREMCARTIYCTNIDKKV 366
AL+ + PV V P SKTA+ P + T F P RT++ +D
Sbjct: 745 FALSKDRQFMNGRPVLVDPCVDRSKTALRPKHQTGFDP----------RTVFVKRLDHSC 794
Query: 367 TQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMA-ESAIAALNCSGVVLGSLPI 424
T+ DV+ FE G V +R++ R A+VEF + ++A A +N +
Sbjct: 795 TEQDVRTLFEQY-GAVKEVRMVTTLAGKPRGFAYVEFEASRDAATAIMNLDKAEFKGRQL 853
Query: 425 RVSPSKTPVRPRA 437
+V+ S P + A
Sbjct: 854 QVALSNPPSKGHA 866
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
++ ++YV D+D VT+ QL LF GQVV RIC D S L + ++ F++ + A
Sbjct: 20 QLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAA 79
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
+A L T L P+R++ S R R+ A I+ N+D+ + D
Sbjct: 80 KAMDVLNFTPLNNKPIRIMYSH------------RDPSVRKSGAANIFIKNLDRAI---D 124
Query: 371 VKLFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
K ++ S+ G + ++ D ++ FV+F ESA +A++ +G++L P+ V
Sbjct: 125 HKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV 184
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 236 GQGKRRMNSRTSLAQR-EEIIRRTV--------YVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ ++ L +R E+ ++ TV Y+ ++D VT+E+L+ LF G V C
Sbjct: 276 GKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSC 335
Query: 287 RICGDPNSVLRFA-FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332
+I DP + R + F+ F+ E RA + G M+ P+ V P++
Sbjct: 336 KILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQ 382
>gi|340383093|ref|XP_003390052.1| PREDICTED: hypothetical protein LOC100637518 [Amphimedon
queenslandica]
Length = 428
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 332 KTAIAPVNPTFLPRT----EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 387
++A APV P+ P T + + RTIY N+ + V FF++ CGE+ +R+
Sbjct: 84 QSAAAPVLPSMPPITGNVDPSKIDEIRRTIYVGNLSSTLHADQVMNFFQT-CGEIKYVRM 142
Query: 388 LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
GD TR AFVEF ES AL +G + G PI+V+ SK
Sbjct: 143 AGDETQPTRFAFVEFANPESVQVALQYNGAMFGDRPIKVNHSK 185
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAAL 314
IRRT+YV ++ + +Q+ F CG++ R+ GD RFAF+EF + E + AL
Sbjct: 109 IRRTIYVGNLSSTLHADQVMNFFQTCGEIKYVRMAGDETQPTRFAFVEFAN-PESVQVAL 167
Query: 315 NLAGTMLGFYPVRVLPSKTAI 335
G M G P++V SK AI
Sbjct: 168 QYNGAMFGDRPIKVNHSKNAI 188
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D V + QL +F G VV R+C D N+ L +A++ F+ A+ ARA
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAM-- 100
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
ML F PV P + + +P+ R+ A I+ N+DK + D K F
Sbjct: 101 ---EMLNFTPVNGKPIRIMYSNRDPS-------SRKSGAANIFIKNLDKSI---DNKALF 147
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+ S G + ++ + ++ FV++ ESA A+N +G++L + V P
Sbjct: 148 DTFSAFGTILSCKVATEISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGP 204
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 259 VYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNL 316
+Y+ ++D V + E+L LF G + C++ D N V + + F+ F + +RA + +
Sbjct: 326 LYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAM 385
Query: 317 AGTMLGFYPVRV 328
G M+G P+ V
Sbjct: 386 NGKMVGSKPLYV 397
>gi|291242201|ref|XP_002740997.1| PREDICTED: splicing factor, arginine/serine-rich 12-like
[Saccoglossus kowalevskii]
Length = 574
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 253 EIIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
E IRRT+YV ++D Q VT EQL F G+V R+ GD RFAF+EF+D+ A
Sbjct: 166 EEIRRTIYVGNLDSQTVTAEQLLNFFSQVGEVKYVRMAGDETQPTRFAFVEFSDQNSVA- 224
Query: 312 AALNLAGTMLGFYPVRVLPSKTAI 335
AAL G M G P+++ S AI
Sbjct: 225 AALTYNGVMFGGRPLKINHSNNAI 248
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
E RTIY N+D + A+ L F S GEV +R+ GD TR AFVEF S A
Sbjct: 166 EEIRRTIYVGNLDSQTVTAEQLLNFFSQVGEVKYVRMAGDETQPTRFAFVEFSDQNSVAA 225
Query: 411 ALNCSGVVLGSLPIRV 426
AL +GV+ G P+++
Sbjct: 226 ALTYNGVMFGGRPLKI 241
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAAL 314
+++YV D++ VT+ QL LF GQV+ R+C D +S L +A++ F + + ARA
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
L L P+RV+ S R R + I+ N+DK + +
Sbjct: 99 LLNFAPLNGKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKAIDHKTLHDT 146
Query: 375 FESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F S G + ++ D S FV++ E+A +A+ + +G+++ P+ V P
Sbjct: 147 F-SAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGP 201
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAAL 314
+++YV D++ VT+ QL LF GQV+ R+C D +S L +A++ F + + ARA
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
L L P+RV+ S R R + I+ N+DK + +
Sbjct: 99 LLNFAPLNGKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKAIDHKTLHDT 146
Query: 375 FESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F S G + ++ D S FV++ E+A +A+ + +G+++ P+ V P
Sbjct: 147 F-SAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGP 201
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D + ++QL LF G++ C+I D N V + + F+ F+ E ++A +
Sbjct: 323 LYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMN 382
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMC 353
G M+ P+ V F R ED + M
Sbjct: 383 GKMISGKPLYV------------AFAQRKEDRKAML 406
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAAL 314
+++YV D++ VT+ QL LF GQV+ R+C D +S L +A++ F + + ARA
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
L L P+RV+ S R R + I+ N+DK + +
Sbjct: 99 LLNFAPLNGKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKAIDHKTLHDT 146
Query: 375 FESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F S G + ++ D S FV++ E+A +A+ + +G+++ P+ V P
Sbjct: 147 F-SAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGP 201
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D + ++QL LF G++ C+I D N V + + F+ F+ E ++A +
Sbjct: 323 LYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMN 382
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMC 353
G M+ P+ V F R ED + M
Sbjct: 383 GKMISGKPLYV------------AFAQRKEDRKVML 406
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D V + QL +F G VV R+C D N+ L +A++ F+ A+ ARA
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARAL-- 97
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
ML F P+ P + + +P+ R+ A I+ N+DK + D K +
Sbjct: 98 ---EMLNFTPINGKPIRIMYSNRDPS-------SRKSGAANIFIKNLDKSI---DNKALY 144
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+ SV G + ++ + ++ FV+F + E+A A++ +G++L + V P
Sbjct: 145 DTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGP 201
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 28/212 (13%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
VYV ++ + TE+ L +F G + + + + R F F+ F + + ARA +L
Sbjct: 220 VYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLN 279
Query: 318 GTMLG---FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART-IYCTNIDKKVTQAD-VK 372
G +Y R + F ++ + T +Y N+D + + +K
Sbjct: 280 GKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLK 339
Query: 373 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPSK 430
F G + +++ D + ++ FV F AE A AL +G ++GS P+ V+ ++
Sbjct: 340 EIFADF-GTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQ 398
Query: 431 -------------TPVRPR------APRLPMH 443
+ +RP APR+PM+
Sbjct: 399 RKEERRARLQAQFSQMRPMVMPPSVAPRMPMY 430
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D V + QL +F G VV R+C D N+ L +A++ F+ A+ ARA
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEM 99
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T + P+R++ S R R+ A I+ N+DK + D K +
Sbjct: 100 LNFTPINGKPIRIMYSN------------RDPSSRKSGAANIFIKNLDKSI---DNKALY 144
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+ SV G + ++ + ++ FV+F + E+A A++ +G++L + V P
Sbjct: 145 DTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGP 201
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D V + QL +F G VV R+C D N+ L +A++ ++ A+ ARA
Sbjct: 41 SLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARAL-- 98
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
ML F P+ P + + +P+ R+ I+ N+DK + D K +
Sbjct: 99 ---EMLNFTPINGKPIRIMYSNRDPSL-------RKSGTANIFIKNLDKSI---DNKALY 145
Query: 376 ESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
++ C G + ++ D ++ FV++ E+A AA++ +G+++ + V P
Sbjct: 146 DTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGP 202
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D V +++L LF G + C++ D N V R + F+ F + +RA +
Sbjct: 324 LYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMN 383
Query: 318 GTMLGFYPVRV 328
M+G P+ V
Sbjct: 384 SKMVGSKPLYV 394
>gi|340382751|ref|XP_003389881.1| PREDICTED: hypothetical protein LOC100632051 [Amphimedon
queenslandica]
Length = 475
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 332 KTAIAPVNPTFLPRT----EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 387
++A APV P+ P T + + RTIY N+ + AD + F CGE+ +R+
Sbjct: 149 QSAAAPVLPSMPPITGNVDPSKIDEIRRTIYVGNLSSTL-HADQVMNFFLTCGEIKYVRM 207
Query: 388 LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
GD TR AFVEF ES AL +G + G PI+V+ SK
Sbjct: 208 AGDEMQPTRFAFVEFANPESVQVALQYNGAMFGDRPIKVNHSK 250
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAAL 314
IRRT+YV ++ + +Q+ F+ CG++ R+ GD RFAF+EF + E + AL
Sbjct: 174 IRRTIYVGNLSSTLHADQVMNFFLTCGEIKYVRMAGDEMQPTRFAFVEFAN-PESVQVAL 232
Query: 315 NLAGTMLGFYPVRVLPSKTAI 335
G M G P++V SK AI
Sbjct: 233 QYNGAMFGDRPIKVNHSKNAI 253
>gi|75334880|sp|Q9LEB4.1|RBP45_NICPL RecName: Full=Polyadenylate-binding protein RBP45;
Short=Poly(A)-binding protein RBP45; AltName:
Full=RNA-binding protein 45; Short=NplRBP45
gi|9663767|emb|CAC01237.1| RNA Binding Protein 45 [Nicotiana plumbaginifolia]
Length = 409
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 34/213 (15%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCR 287
S G G+RR +S T++V D+ VT+ L F V +VV R
Sbjct: 163 SLGAGERRDDS----------AEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDR 212
Query: 288 ICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS---KTAIAPVNPTFL- 343
I G + F++F DE+E RA + G + P+R+ P+ K P T+
Sbjct: 213 ITGRSKG---YGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQN 269
Query: 344 PR-TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF 402
P+ T+ E + TI+ +D V + ++ F S GE+ ++++ R FV+F
Sbjct: 270 PQATQGESDPNNTTIFVGGLDPTVAEEHLRQVF-SPYGELVHVKIVA----GKRCGFVQF 324
Query: 403 ---VMAESAIAALNCSGVVLGSLPIRVSPSKTP 432
AE A+++LN G LG IR+S ++P
Sbjct: 325 GTRASAEQALSSLN--GTQLGGQSIRLSWGRSP 355
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D V + QL +F G VV R+C D N+ L +A++ F+ A+ ARA
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAL-- 100
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
ML F PV P + + +P+ R+ A I+ N+DK + D K +
Sbjct: 101 ---EMLNFTPVNGKPIRIMYSNRDPS-------SRKSGAANIFIKNLDKSI---DNKALY 147
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+ S G + ++ + ++ FV++ ESA A+N +G++L + V P
Sbjct: 148 DTFSAFGNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGP 204
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 259 VYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNL 316
+Y+ ++D V + E+L LF G + C++ D N V + + F+ F + RA + +
Sbjct: 326 LYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAM 385
Query: 317 AGTMLGFYPVRV 328
G M+G P+ V
Sbjct: 386 NGKMVGSKPLYV 397
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ + V + QL +F G VV R+C D NS L +A++ + ++ + ARA
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T + P+R++ S R R+ I+ N+DK + D K +
Sbjct: 96 LNFTPINGKPIRIMYSN------------RDPSSRKSGTGNIFIKNLDKSI---DNKALY 140
Query: 376 ESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
++ C G + ++ D +R FV+F ESA +A++ +G+++ + V P
Sbjct: 141 DTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGP 197
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGA 310
E+ +Y+ ++++ + +E+L LF G + C++ D N V R + F+ F +
Sbjct: 312 EKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDAN 371
Query: 311 RAALNLAGTMLGFYPVRV 328
RA + G M+G P+ V
Sbjct: 372 RALTEMNGKMVGSKPLYV 389
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 8/176 (4%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
VYV ++ VT+++L +F G + + D + R F F+ F + A+A L
Sbjct: 216 VYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELN 275
Query: 318 GTMLG---FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART-IYCTNIDKKVTQADVKL 373
G + Y R + F ++ E T +Y N+++ + ++
Sbjct: 276 GKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRE 335
Query: 374 FFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
F G + +++ D + +R FV F AE A AL +G ++GS P+ V+
Sbjct: 336 LFAEY-GNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVA 390
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
+ + ++YV D++Q VTE QL LF GQ+V R+C D S L + ++ + + + A
Sbjct: 25 QFVSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAA 84
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
+A +L F PV P + + +PT R+ A IY N+DK +
Sbjct: 85 QAL-----EVLNFTPVNGKPIRIMYSYRDPTI-------RKSGAGNIYIKNLDKAIDNKA 132
Query: 371 VKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+ F S G + ++ D S FV+F ESA A++ +G++L + V P
Sbjct: 133 LHDTF-SAFGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGP 191
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 236 GQGKRRMNSRTSL-AQREEIIRRTV--------YVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ +++ L Q E+ ++ TV YV ++D +T+++L LF G + C
Sbjct: 281 GKAQKKSEREVELKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSC 340
Query: 287 RICGDPNSVLRFA-FIEFTDEAEGARAALNLAGTMLGFYPVRV 328
++ DPN V + + F+ ++ E ++A + G M+ P+ V
Sbjct: 341 KVMRDPNGVSKGSGFVAYSTAEEASKALTEMNGKMIVSKPLYV 383
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 30/212 (14%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
VYV ++ + TEE L +F G + + D + R F F+ F + + AR+ L
Sbjct: 210 VYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALN 269
Query: 318 GTMLG---FYPVRVLPSKTAIAPVNPTF---LPRTEDEREMCARTIYCTNIDKKVTQADV 371
G +Y + + F L T D+ E +Y N+D +T +
Sbjct: 270 GKTFDEKEWYVGKAQKKSEREVELKGQFEQTLKETVDKFE--GLNLYVKNLDDSITDDKL 327
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429
K F S G + +++ D + ++ FV + AE A AL +G ++ S P+ V+ +
Sbjct: 328 KELF-SEFGTITSCKVMRDPNGVSKGSGFVAYSTAEEASKALTEMNGKMIVSKPLYVALA 386
Query: 430 K-------------TPVRPR-----APRLPMH 443
+ + +RP PR+PM+
Sbjct: 387 QRKEERRARLQAQFSQMRPAMAPAVGPRMPMY 418
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ + V + QL +F G VV R+C D NS L +A++ + ++ + ARA
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T + P+R++ S R R+ I+ N+DK + D K +
Sbjct: 96 LNFTPINGKPIRIMYSN------------RDPSSRKSGTGNIFIKNLDKSI---DNKALY 140
Query: 376 ESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
++ C G + ++ D +R FV+F ESA +A++ +G+++ + V P
Sbjct: 141 DTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGP 197
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGA 310
E+ +Y+ ++++ + +E+L LF G + C++ D N V R + F+ F +
Sbjct: 312 EKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDAN 371
Query: 311 RAALNLAGTMLGFYPVRV 328
RA + G M+G P+ V
Sbjct: 372 RALTEMNGKMVGSKPLYV 389
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 8/176 (4%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
VYV ++ VT+++L +F G + + D + R F F+ F + A+A L
Sbjct: 216 VYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELN 275
Query: 318 GTMLG---FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART-IYCTNIDKKVTQADVKL 373
G + Y R + F ++ E T +Y N+++ + ++
Sbjct: 276 GKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRE 335
Query: 374 FFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
F G + +++ D + +R FV F AE A AL +G ++GS P+ V+
Sbjct: 336 LFAEY-GNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVA 390
>gi|198429455|ref|XP_002129672.1| PREDICTED: similar to splicing factor, arginine/serine-rich 12
[Ciona intestinalis]
Length = 373
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 19/189 (10%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICG---DPNSV-LRFAFIEFTDEAEGARAAL 314
+ V++I T EQ+ LF G V+ + DPN+ + AFI++ D + A
Sbjct: 7 IQVTNIAPTATLEQIHTLFDHLGTFVEFELFPRNPDPNNPGTKVAFIKYADPS-SVGVAQ 65
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFL----PRT----------EDEREMCARTIYCT 360
+L T+ + +P I P + P T + + + RTIY
Sbjct: 66 HLTSTVFIDRALICVPYTDGIIPNETVAMQFATPATALIQAGGVIDQTKLDEIKRTIYVG 125
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLG 420
N+D K AD + F CGEV +R+ GD TR AF+EF E +A+ +G + G
Sbjct: 126 NLDSKQATADQLMTFFGTCGEVKFVRMAGDETQPTRFAFIEFAKIEHVDSAMKLNGTLFG 185
Query: 421 SLPIRVSPS 429
++++ S
Sbjct: 186 DRALKINHS 194
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 255 IRRTVYVSDID-QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
I+RT+YV ++D +Q T +QL F CG+V R+ GD RFAFIEF + E +A
Sbjct: 118 IKRTIYVGNLDSKQATADQLMTFFGTCGEVKFVRMAGDETQPTRFAFIEFA-KIEHVDSA 176
Query: 314 LNLAGTMLGFYPVRVLPS-----KTAIAPVNPT 341
+ L GT+ G +++ S K A+ PVN T
Sbjct: 177 MKLNGTLFGDRALKINHSNNAIVKPAVKPVNDT 209
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 21/176 (11%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALNL 316
+YV D+D V + QL +F G VV R+C D N+ L +A++ F+ A+ ARA
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAL--- 100
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
ML F PV P + + +P+ R+ A I+ N+DK + D K ++
Sbjct: 101 --EMLNFTPVNGKPIRIMYSNRDPS-------SRKSGAANIFIKNLDKSI---DNKALYD 148
Query: 377 --SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
S G + ++ + ++ FV++ ESA A+N +G++L + V P
Sbjct: 149 TFSAFGNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGP 204
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 259 VYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNL 316
+Y+ ++D V + E+L LF G + C++ D N V + + F+ F + RA + +
Sbjct: 326 LYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAM 385
Query: 317 AGTMLGFYPVRV 328
G M+G P+ V
Sbjct: 386 NGKMVGSKPLYV 397
>gi|193648018|ref|XP_001950341.1| PREDICTED: nucleolysin TIAR-like [Acyrthosiphon pisum]
Length = 388
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 19/188 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
RT+YV ++D VTEE L ALF G V C++ +P S +AF+EF + A A +
Sbjct: 8 RTLYVGNLDPSVTEELLCALFTNIGPVNACKVIREPGSD-PYAFLEFDTHSGAATALAAM 66
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
G + ++V A P N P+ + I+ ++ ++ +K F
Sbjct: 67 NGRLFLDKEMKV---NWATTPGN---QPKLDTSNHY---HIFVGDLSPEIETHTLKEAFA 117
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPS-K 430
GE+ R++ D S AFV FV AE+AI ++N G LGS IR + S +
Sbjct: 118 PF-GEISNCRIVRDPQTLKSKGYAFVSFVKKSDAENAINSMN--GQWLGSRSIRTNWSTR 174
Query: 431 TPVRPRAP 438
P PRAP
Sbjct: 175 KPPPPRAP 182
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D++ V++ QL LF GQVV R+C D S L +A++ F++ + ARA
Sbjct: 47 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEV 106
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L +L P+RV+ S R R + I+ N+DK + + F
Sbjct: 107 LNFAVLNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKTIDNKTLHETF 154
Query: 376 ESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
S G + ++ + + S FV++ E+A A+ + +G+++ P+ V P
Sbjct: 155 SSF-GTILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGP 208
>gi|384499302|gb|EIE89793.1| hypothetical protein RO3G_14504 [Rhizopus delemar RA 99-880]
Length = 292
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 17/191 (8%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALN 315
TV+V ++ T E++ F CG V D R+ PN V FA I+FT AEG +AA+
Sbjct: 82 TVFVGQLNFDATAEEIRTHFGQCGPVSDVRLRMHPNGVKSRGFAHIDFT-SAEGKQAAMA 140
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPT-FLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
L GT +RV ++ A T + P+T+ ++ N+ + +K
Sbjct: 141 LDGTEFMGRTIRVDDAQPAQGRSTDTNYGPKTD--------KVFVANLSYDTDEDSLKQA 192
Query: 375 FE---SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPSK 430
FE ++ GE+ L + D IA+++F + A AA+ +GV L PIR S
Sbjct: 193 FEKFGTIVGEIG-LPISRDTGRIRGIAYIQFETEDEAEAAVKGMNGVYLDGRPIRTDFSG 251
Query: 431 TPVRPRAPRLP 441
R R P
Sbjct: 252 DNDRNRLGERP 262
>gi|443735038|gb|ELU18893.1| hypothetical protein CAPTEDRAFT_226786 [Capitella teleta]
Length = 518
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAAL 314
IRRT++V ++D T EQL F G+V R+ GD RFAF+EFT++A + AL
Sbjct: 165 IRRTIFVGNLDSISTPEQLLQFFTQAGEVKYVRMAGDETLPTRFAFVEFTEQASLLK-AL 223
Query: 315 NLAGTMLGFYPVRVLPSKTAI 335
L G++ PVRV S AI
Sbjct: 224 VLNGSLFSGRPVRVNHSNVAI 244
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RTI+ N+D T + FF + GEV +R+ GD TR AFVEF S + AL
Sbjct: 167 RTIFVGNLDSISTPEQLLQFF-TQAGEVKYVRMAGDETLPTRFAFVEFTEQASLLKALVL 225
Query: 415 SGVVLGSLPIRV 426
+G + P+RV
Sbjct: 226 NGSLFSGRPVRV 237
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ + V + QL +F G VV R+C D NS L +A++ + ++ + ARA
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T + P+R++ S R R+ I+ N+DK + D K +
Sbjct: 96 LNFTPINGKPIRIMYSN------------RDPSSRKSGTGNIFIKNLDKSI---DNKALY 140
Query: 376 ESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
++ C G + ++ D +R FV+F ESA +A++ +G+++ + V P
Sbjct: 141 DTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGP 197
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL F GQVV R+C D + L + ++ FT + ARA
Sbjct: 41 SLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQE 100
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L L PVRV+ S R R A I+ N+DK + + F
Sbjct: 101 LNYIPLNGKPVRVMYSH------------RDPSVRRSGAGNIFIKNLDKSIDHKALHDTF 148
Query: 376 ESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
SV G + ++ D S FV++ ESA A+ +G++L + V P
Sbjct: 149 -SVFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGP 202
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D V++E+L LF G V C++ DPN + R + F+ F+ E +A ++
Sbjct: 324 LYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAMSEMS 383
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 384 GKMIENKPLYV 394
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV D+D VT+ QL +F GQVV R+C D + L + ++ +++ + ARA
Sbjct: 27 VTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 86
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T L P+RV+ S R R+ A I+ N+DK + +
Sbjct: 87 LDVLNFTPLNGKPIRVMYSH------------RDPSIRKSGAGNIFIKNLDKAIDHKALH 134
Query: 373 LFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F S G + ++ L S FV+F ESA+ A+ +G++L + V P
Sbjct: 135 DTF-SAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGP 191
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 23/109 (21%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D + +++L LF G + C++ DPN + R + F+ F+ E +RA + +
Sbjct: 313 LYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMN 372
Query: 318 GTML----------------------GFYPVRVLPSKTAIAPVNPTFLP 344
G M+ F +R +P ++AP P + P
Sbjct: 373 GKMVVSKPLYVALAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIYPP 421
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV D+D VT+ QL LF GQVV R+C D S L + ++ +++ + +RA
Sbjct: 27 VTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRA 86
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T L P+RV+ S R R+ + I+ N+DK + +
Sbjct: 87 LDVLNFTPLNGNPIRVMYSH------------RDPSVRKSGSGNIFIKNLDKAIDHKALH 134
Query: 373 LFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F S G + ++ D S FV+F E+A+ A+ +G++L + V P
Sbjct: 135 DTF-SAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGP 191
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D + +++L LF G G + C++ DPN + R + F+ F+ E ARA +
Sbjct: 313 LYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMN 372
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 373 GRMIVSKPLYV 383
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV D+D VT+ QL LF GQVV R+C D S L + ++ +++ + +RA
Sbjct: 27 VTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRA 86
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T L P+RV+ S R R+ + I+ N+DK + +
Sbjct: 87 LDVLNFTPLNGNPIRVMYSH------------RDPSVRKSGSGNIFIKNLDKAIDHKALH 134
Query: 373 LFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F S G + ++ D S FV+F E+A+ A+ +G++L + V P
Sbjct: 135 DTF-SAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGP 191
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D + +++L LF G G + C++ DPN + R + F+ F+ E ARA +
Sbjct: 313 LYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMN 372
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 373 GRMIVSKPLYV 383
>gi|157114083|ref|XP_001657973.1| nucleolysin tia-1 [Aedes aegypti]
gi|108877443|gb|EAT41668.1| AAEL006710-PA [Aedes aegypti]
Length = 453
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 24/195 (12%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE--AEG 309
EE +T+YV ++DQ VTE+ L ALF G V C+I + +S +AFIE+ + A+
Sbjct: 3 EEAYPKTLYVGNLDQSVTEDLLCALFGQMGAVKSCKIIREASSD-PYAFIEYANHQSAQT 61
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
A AA+N + + + A +P N P+T+ + I+ ++ ++
Sbjct: 62 ALAAMNKR-----LFLKKEIKVNWATSPGN---QPKTDTSQH---HHIFVGDLSPEIETE 110
Query: 370 DVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPI 424
++ F GE+ R++ D S AFV FV AE+AI +N G LGS I
Sbjct: 111 TLREAFAPF-GEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIQMMN--GQWLGSRSI 167
Query: 425 RVSPSKTPVRPRAPR 439
R + S +P APR
Sbjct: 168 RTNWSTR--KPPAPR 180
>gi|348524300|ref|XP_003449661.1| PREDICTED: hypothetical protein LOC100695937 [Oreochromis
niloticus]
Length = 459
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T EQL F G V R+ GD RFAF+EF ++ AR A
Sbjct: 163 IRRTVYVGNLNSQTTTAEQLLEFFKQVGDVKFVRMAGDETQPTRFAFVEFVEQESVAR-A 221
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L L G M G P++V S AI
Sbjct: 222 LTLNGVMFGDRPLKVNHSNNAI 243
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T A+ L F G+V +R+ GD TR AFVEFV ES AL
Sbjct: 165 RTVYVGNLNSQTTTAEQLLEFFKQVGDVKFVRMAGDETQPTRFAFVEFVEQESVARALTL 224
Query: 415 SGVVLGSLPIRV 426
+GV+ G P++V
Sbjct: 225 NGVMFGDRPLKV 236
>gi|383863609|ref|XP_003707272.1| PREDICTED: nucleolysin TIAR-like [Megachile rotundata]
Length = 392
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 22/185 (11%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE--AEG 309
EE RT+YV ++D V+EE L ALF G V C+I +P + +AF+EFT+ A
Sbjct: 3 EESNPRTLYVGNLDSSVSEELLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 61
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
A AA+N + + + A +P N L + I+ ++ ++
Sbjct: 62 ALAAMNKRSFL-----NKEMKVNWATSPGNQPKLDTSNHHH------IFVGDLSPEIETQ 110
Query: 370 DVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPI 424
+K F GE+ R++ D S AFV FV AE+AIAA+N G LGS I
Sbjct: 111 TLKEAFAPF-GEISNCRIVRDPQTMKSKGYAFVSFVKKSEAEAAIAAMN--GQWLGSRSI 167
Query: 425 RVSPS 429
R + S
Sbjct: 168 RTNWS 172
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV D++ VT+ QL LF GQVV R+C D S L + ++ +++ + ARA
Sbjct: 23 VTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARA 82
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T L P+RV+ S +PT R+ A I+ N+DK + +
Sbjct: 83 LEMLNFTPLNGSPIRVMYSHR-----DPTI-------RKSGAGNIFIKNLDKAIDHKALH 130
Query: 373 LFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F S G + ++ D S FV+F E+A A+ +G++L + V P
Sbjct: 131 DTF-SAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGP 187
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 236 GQGKRRMNSRTSLAQR-EEIIRRT--------VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ +++ L QR E+ ++ +Y+ ++D + +E+L LF G + C
Sbjct: 277 GKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSC 336
Query: 287 RICGDPNSVLRFA-FIEFTDEAEGARAALNLAGTMLGFYPVRV 328
++ DPN + R + F+ F+ E +RA L + G ++ P+ V
Sbjct: 337 KVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKIVVSKPLYV 379
>gi|84468322|dbj|BAE71244.1| putative DNA binding protein [Trifolium pratense]
Length = 402
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 25/190 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ VT+ L F V +VV R+ G + F+ F DE E R
Sbjct: 153 TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKG---YGFVRFADEGEQMR 209
Query: 312 AALNLAGTMLGFYPVRVLPSK------TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK 365
A + G + P+R+ P+ T A + + P + E + TI+ N+D
Sbjct: 210 AMTEMQGVLCSTRPMRIGPATNKNPAATTQAKASYSNTPGGQSENDPNNTTIFVGNLDPN 269
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALNCSGVVLGSL 422
VT ++ F S GE+ +++ R FV+F AE AI LN G +LG
Sbjct: 270 VTDDHLRQVF-SQYGELVHVKI----PSGKRCGFVQFSDRSSAEEAIRVLN--GTLLGGQ 322
Query: 423 PIRVSPSKTP 432
+R+S +TP
Sbjct: 323 NVRLSWGRTP 332
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 26/213 (12%)
Query: 220 NGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVG 279
NG+ A AV + G G L + + ++YV D++ V++ QL LF
Sbjct: 12 NGSPGAVPAVVSPGAVGVG---------LGVAQPLPTTSLYVGDLEGSVSDSQLYELFSQ 62
Query: 280 CGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAP 337
GQVV R+C D S L +A++ F + + ARA L L P+RV+ S
Sbjct: 63 AGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEVLNFAPLNNKPIRVMYSN----- 117
Query: 338 VNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTR 396
R R + I+ N+DK + + F S G + ++ D S
Sbjct: 118 -------RDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSF-GTILSCKVAMDEGGQSKG 169
Query: 397 IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
FV++ E+A A+ + +G+++ P+ V P
Sbjct: 170 FGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGP 202
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D + ++QL LF G++ C++ D N + + + F+ F+ E ++A +
Sbjct: 324 LYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTEMN 383
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMC 353
G M+ P+ V F R ED + M
Sbjct: 384 GKMISGKPLYV------------AFAQRKEDRKAML 407
>gi|193704514|ref|XP_001944340.1| PREDICTED: hypothetical protein LOC100161931 [Acyrthosiphon pisum]
Length = 673
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAE 308
++R E IRRT+ ++D+ VT+++L F G V R C N + R+A +E++++A
Sbjct: 167 SRRIEEIRRTLAAINVDENVTDDELIGFFQKAGDVKYVRWCSRENDITRYALVEYSEQA- 225
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTAIA 336
A L L G LG PV+V + AIA
Sbjct: 226 SVIAGLKLNGVQLGSRPVQVTHATQAIA 253
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 91/233 (39%), Gaps = 63/233 (27%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVL-----RFAFIEFTDEAEGAR 311
+ + V++I Q T++Q+ LF G++ D R+ V R ++++ D A
Sbjct: 15 KVIQVTNIAPQATKDQMQTLFGCIGKIEDIRLYPQIRDVSVPVQSRICYVKYFDSLCVAV 74
Query: 312 A------------------------------ALNLAG---TMLGFYP------------V 326
A AL++A + G YP +
Sbjct: 75 AQHLTNTVFIDRALIVTPYQSSVGDIPDEYRALDIANQANIVPGLYPSDPKLPAHVVNQI 134
Query: 327 RVLPSKTAIAPVNPTF----------LPRTEDER--EMCARTIYCTNIDKKVTQADVKLF 374
+P I +P LP T D R E RT+ N+D+ VT ++ F
Sbjct: 135 EGIPPNQVIVTNDPVLASNGLPPYPQLPITYDSRRIEEIRRTLAAINVDENVTDDELIGF 194
Query: 375 FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427
F+ G+V +R + TR A VE+ S IA L +GV LGS P++V+
Sbjct: 195 FQK-AGDVKYVRWCSRENDITRYALVEYSEQASVIAGLKLNGVQLGSRPVQVT 246
>gi|449278700|gb|EMC86491.1| Splicing factor, arginine/serine-rich 12 [Columba livia]
Length = 517
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG +P + V+P+ + + RT+Y N++ + T AD
Sbjct: 35 AALDPNITALG-----EIPQPPIMGNVDPSKI-------DEIRRTVYVGNLNSQTTTADQ 82
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 83 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 137
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
>gi|110756942|ref|XP_395357.3| PREDICTED: nucleolysin TIAR [Apis mellifera]
gi|340713958|ref|XP_003395500.1| PREDICTED: nucleolysin TIAR-like [Bombus terrestris]
gi|350421173|ref|XP_003492759.1| PREDICTED: nucleolysin TIAR-like [Bombus impatiens]
gi|380025693|ref|XP_003696603.1| PREDICTED: nucleolysin TIAR-like [Apis florea]
Length = 392
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 22/185 (11%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE--AEG 309
EE RT+YV ++D V+EE L ALF G V C+I +P + +AF+EFT+ A
Sbjct: 3 EESNPRTLYVGNLDTSVSEELLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 61
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
A AA+N + + + A +P N L + I+ ++ ++
Sbjct: 62 ALAAMNKRSFL-----NKEMKVNWATSPGNQPKLDTSNHHH------IFVGDLSPEIETQ 110
Query: 370 DVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPI 424
+K F GE+ R++ D S AFV FV AE+AIAA+N G LGS I
Sbjct: 111 TLKEAFAPF-GEISNCRIVRDPQTMKSKGYAFVSFVKKSEAEAAIAAMN--GQWLGSRSI 167
Query: 425 RVSPS 429
R + S
Sbjct: 168 RTNWS 172
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 25/179 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEAEGARAA 313
++YV D+++ VTE L +F G V R+C D SV R +A++ + + A+ RA
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRD--SVTRKSLGYAYVNYHNLADAERAL 74
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L T + P R++ S R R+ I+ N+DK + D K
Sbjct: 75 DTLNYTNIKGQPARLMWSH------------RDPSLRKSGTGNIFVKNLDKSI---DNKA 119
Query: 374 FFE--SVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F+ S+ G + ++ D + S FV + ESA A+ +GV LGS + V P
Sbjct: 120 LFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D V + QL +F G VV R+C D + L +A++ + A+ ARA
Sbjct: 35 SLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARAL-- 92
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
ML F P+ P + + +P+ R+ I+ N+DK + D K +
Sbjct: 93 ---EMLNFTPINGRPIRIMYSNRDPSL-------RKSGTANIFIKNLDKSI---DNKALY 139
Query: 376 ESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
++ C G + ++ D ++ FV++ E+A AA+ +G+++ + V P
Sbjct: 140 DTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 196
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D V +E+L LF G + C++ D N R + F+ F + +RA +
Sbjct: 318 LYLKNLDDTVDDEKLRELFAEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMN 377
Query: 318 GTMLGFYPVRV 328
M+G P+ V
Sbjct: 378 NKMVGSKPLYV 388
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D V + QL +F G VV R+C D S L +A++ + A+ ARA
Sbjct: 33 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL-- 90
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
ML F P+ P + + +P+ R+ I+ N+DK + D K +
Sbjct: 91 ---EMLNFTPINGRPIRIMYSNRDPSL-------RKSGTANIFIKNLDKSI---DNKALY 137
Query: 376 ESVC--GEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
++ C G + ++ D S FV++ E+A AA+ +G+++ + V P
Sbjct: 138 DTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 194
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D V +E+L LF G + C++ D N R + F+ F + +RA +
Sbjct: 316 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 375
Query: 318 GTMLGFYPVRV 328
M+G P+ V
Sbjct: 376 NKMVGNKPLYV 386
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L +F G V R+C D + L +A++ F ++A+G RA
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRAL-- 104
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L + P++ P + + +P R+ A IY N+D + + F
Sbjct: 105 ---EELNYSPIKERPCRIMWSQRDPAL-------RKTGAGNIYIKNLDPAIDNKALHDTF 154
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
S G++ ++ D + +S FV + AESA +A+ + +G++L + V P
Sbjct: 155 -SAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGP 208
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 20/161 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+DQ VT+ QL LF GQVV R+C D ++ L + ++ ++++ + RA
Sbjct: 41 SLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAI-- 98
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+L F P+ + +++ +PT +R+ A I+ N+DK + D+K
Sbjct: 99 ---DVLNFTPLNNKTIRVSVSRRDPT-------DRKSGAGNIFIKNLDKSI---DIKALH 145
Query: 376 ESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
E+ G + ++ D ++ FV++ E+A A++
Sbjct: 146 ETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAID 186
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D + +E+L LF G + C++ DP+ + R + F+ F+ E +RA +
Sbjct: 324 LYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMN 383
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 384 GKMIVSKPLYV 394
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 17/184 (9%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDE 306
A + ++YV D++ VT+ QL LF GQVV R+C D S L + ++ +++
Sbjct: 17 ANNPNFVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNP 76
Query: 307 AEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV 366
+ ARA L T + P+RV+ S R R+ A I+ N+DK +
Sbjct: 77 QDAARALEVLNFTPVNGSPIRVMYSH------------RDPSVRKSGAGNIFIKNLDKAI 124
Query: 367 TQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPI 424
+ F SV G + ++ D S FV+F E+A A+ +G++L +
Sbjct: 125 DHKALHDTF-SVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQV 183
Query: 425 RVSP 428
V P
Sbjct: 184 YVGP 187
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 236 GQGKRRMNSRTSLAQR-EEIIRRT--------VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ +++ L QR E+ ++ +Y+ ++D + +E++ LF G + C
Sbjct: 277 GKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSC 336
Query: 287 RICGDPNSVLRFA-FIEFTDEAEGARAALNLAGTMLGFYPVRV 328
++ DPN + R + F+ F+ E +RA L + G M+ P+ V
Sbjct: 337 KVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLYV 379
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
+ + ++YV D+D VT+ QL LF GQVV R+C D S L + ++ F++ + A
Sbjct: 27 QFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAA 86
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA L T L P+R++ S R R+ I+ N+D+ +
Sbjct: 87 RALDVLNFTPLNNRPIRIMYSH------------RDPSIRKSGQGNIFIKNLDRAIDHKA 134
Query: 371 VKLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
+ F S G + ++ D S FV+F ESA A+ +G++L + V P
Sbjct: 135 LHDTF-STFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGP 193
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D + +E+L LF G + C++ DPN + R + F+ F+ E +RA L +
Sbjct: 315 LYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLEMN 374
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 375 GKMVVSKPLYV 385
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
+ + ++YV D++Q VTE QL LF GQVV R+C D S L + ++ + + + A
Sbjct: 25 QFVPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAA 84
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
+A +L F PV P + + +PT R+ IY N+DK +
Sbjct: 85 QAI-----EVLNFTPVNGKPIRIMYSYRDPTI-------RKSGTGNIYIKNLDKAIDNKA 132
Query: 371 VKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+ F S G + ++ D S FV+F ESA A++ +G++L + V P
Sbjct: 133 LHDTF-SAFGSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGP 191
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 236 GQGKRRMNSRTSLAQR-EEIIRRTV--------YVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ +++ L R E+ ++ TV YV ++D +T+++L LF G + C
Sbjct: 281 GKAQKKSEREVELKGRFEQTLKETVDKFQGLNLYVKNLDDSITDDKLKELFSEFGTITSC 340
Query: 287 RICGDPNSVLRFA-FIEFTDEAEGARAALNLAGTMLGFYPVRV 328
++ DPN V R + F+ F+ E +RA + G M+ P+ V
Sbjct: 341 KVMRDPNGVSRGSGFVAFSTAEEASRALTEMNGKMVVSKPLYV 383
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 56/236 (23%)
Query: 250 QREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFT 304
+RE I + VYV ++ + TEE L +F G + + D N R F F+ F
Sbjct: 197 ERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFE 256
Query: 305 DEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--------- 355
+ + A++ L G V ++ ++E E E+ R
Sbjct: 257 NPDDAAQSVEALNGKTFDEKEWYVGKAQK-----------KSEREVELKGRFEQTLKETV 305
Query: 356 ------TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESA 408
+Y N+D +T +K F S G + +++ D + +R FV F AE A
Sbjct: 306 DKFQGLNLYVKNLDDSITDDKLKELF-SEFGTITSCKVMRDPNGVSRGSGFVAFSTAEEA 364
Query: 409 IAALN-CSGVVLGSLPIRVS--------------------PSKTPVRPRAPRLPMH 443
AL +G ++ S P+ V+ P+ P P PR+P++
Sbjct: 365 SRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQYSQIRPAMAP--PIGPRMPIY 418
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 14/160 (8%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL 314
R V+V ++D+ + +QL+ +F G+V+ C++ D + V + + F++F E A
Sbjct: 30 RGNVFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASGVSKGYGFVQFYSELSVNIACN 89
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
GT++ + V P F+ R + + +Y N+ + T D+K+
Sbjct: 90 VRNGTLIRNQHIHVSP-----------FVSRRQWDESRVFTNVYVKNLAETTTDDDLKMI 138
Query: 375 FESVCGEVYRLRLLGDYHHSTRI-AFVEFVMAESAIAALN 413
FE GE+ ++ D +R+ FV F AE+A+ A++
Sbjct: 139 FEEF-GEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAID 177
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
+YV ++D V +L LF G ++ C++ PN + + F+EF+ E ++A L +
Sbjct: 225 LYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMN 284
Query: 318 GTMLGFYPVRV 328
G ++G P+ V
Sbjct: 285 GKVVGNKPIYV 295
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 19/182 (10%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN-L 316
VYV ++ + T++ L +F G++ + D R F F+ F ++AE A A++ +
Sbjct: 121 VYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNF-EKAEAAVTAIDKM 179
Query: 317 AGTMLG---FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR---TIYCTNIDKKVTQAD 370
GT++ + R K I + F + +R+M R +Y N+D V
Sbjct: 180 NGTIVDEKELHVGRAQRKKNRIQDLKVIF-KLEKIKRDMKTRKGTNLYVKNLDYSVDNTK 238
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRIA----FVEFVMAESAI-AALNCSGVVLGSLPIR 425
++ F S G + +++ H RI+ FVEF +E A A L +G V+G+ PI
Sbjct: 239 LQELF-SEFGTIISCKVMV---HPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIY 294
Query: 426 VS 427
VS
Sbjct: 295 VS 296
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
+ + ++YV D+D VT+ QL LF GQVV R+C D S L + ++ F++ + A
Sbjct: 24 QFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAA 83
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA L T L P+R++ S R R+ I+ N+D+ +
Sbjct: 84 RALDVLNFTPLNNRPIRIMYSH------------RDPSIRKSGQGNIFIKNLDRAIDHKA 131
Query: 371 VKLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
+ F S G + ++ D S FV+F ESA A+ +G++L + V P
Sbjct: 132 LHDTF-STFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGP 190
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D + +++L LF G + C++ DPN + R + F+ F+ E +RA L +
Sbjct: 312 LYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALLEMN 371
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 372 GKMVVSKPLYV 382
>gi|347967649|ref|XP_312633.5| AGAP002335-PA [Anopheles gambiae str. PEST]
gi|333468363|gb|EAA07505.5| AGAP002335-PA [Anopheles gambiae str. PEST]
Length = 458
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 94/195 (48%), Gaps = 24/195 (12%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE--AEG 309
EE +T+YV ++D VTEE L LF G V C+I + S+ FAFIE+ + A+
Sbjct: 3 EESYPKTLYVGNLDTSVTEELLCTLFSQMGTVKSCKIIRE-TSIDPFAFIEYANHQSAQT 61
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
A AA+N M +RV + +A P+T+ + I+ ++ ++
Sbjct: 62 ALAAMNK--RMFLKKEIRVNWATSA------GNQPKTDTSQH---HHIFVGDLSPEIDTE 110
Query: 370 DVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPI 424
++ F GE+ R++ D S AFV FV AE+AIA +N G LGS I
Sbjct: 111 TLREAFAPF-GEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIAMMN--GQWLGSRSI 167
Query: 425 RVSPSKTPVRPRAPR 439
R + S +P APR
Sbjct: 168 RTNWSTR--KPPAPR 180
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
+ + ++YV D+D V + QL LF GQVV R+C D ++ L + ++ + E
Sbjct: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA L T L P+R++ S +PT R+ A I+ N+DK +
Sbjct: 96 RALDELNFTPLNGKPIRIMYSYR-----DPTI-------RKSGAGNIFIKNLDKSIDNKA 143
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+ F S G + ++ D +R FV+F ESA +A++ +G++L + V P
Sbjct: 144 LHDTF-STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D +++++L LF G + C++ DPN + R + F+ F+ E ++A +
Sbjct: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 384 GKMVVSKPLYV 394
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 33/222 (14%)
Query: 250 QREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFT 304
+RE +T VYV ++ + TE+ L +F G + + D + + F F+ F
Sbjct: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
Query: 305 DEAEGARAALNLAGTMLG---FYPVRVLPSKTAIAPVNPTF---LPRTEDEREMCARTIY 358
D + AR+ L G +Y + + F L T D+ E +Y
Sbjct: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE--GLNLY 325
Query: 359 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSG 416
N+D ++ +K F S G + +++ D + +R FV F AE A AL +G
Sbjct: 326 VKNLDDSISDDKLKELF-SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
Query: 417 VVLGSLPIRV-----------------SPSKTPVRPRAPRLP 441
++ S P+ V S + PV PR P P
Sbjct: 385 KMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYP 426
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 15/163 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
E+ + +YV D+D +V+E +L +F G G +V R+C D S L +A++ F ++ +
Sbjct: 25 ELHKAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDAS 84
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
+A L T L P+R++ S P R+ ++ N+D + A
Sbjct: 85 KALACLNHTKLMGKPMRIMWSHRDPLP------------RKTGLANLFVKNLDPSINSAS 132
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413
++ F G + ++ + S FV+F +SA AALN
Sbjct: 133 LQDIFCKF-GNILSCKVAEENGKSKCFGFVQFDSDDSATAALN 174
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 21/186 (11%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R + R+ + R+T ++V ++D + L +F G ++ C++ + F F
Sbjct: 101 RIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENGKSKCFGF 160
Query: 301 IEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYC 359
++F D + A AALN L TML ++ SK R E E +Y
Sbjct: 161 VQF-DSDDSATAALNALNDTMLD--GKKLFVSKFVKK------CERKEASEETKFTNVYV 211
Query: 360 TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVM---AESAIAALNCS 415
N+ + +T+ ++ F S G+V + ++ D + +R FV F A+ A+ ALN
Sbjct: 212 KNLGEDLTEDIIRDKF-SEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN-- 268
Query: 416 GVVLGS 421
G +LGS
Sbjct: 269 GAMLGS 274
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 227 AAVRRKKSF-GQGKRRMNSRTSLAQREEIIR--------RTVYVSDIDQQVTEEQLAALF 277
A + KK F G+ +++ + L +E++ +YV ++D V +++L F
Sbjct: 270 AMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHF 329
Query: 278 VGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLAGTML 321
CGQ+ ++ + + + F F+ F+ E +A L GT+L
Sbjct: 330 SSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLL 374
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 24/220 (10%)
Query: 215 NHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLA 274
+H A N NV+ GQ +N+ S A + ++YV D+ Q VTE L
Sbjct: 45 DHTAGNANVSGGGVSGTAPPAGQRPNGLNAAASAA---NFVSPSLYVGDLHQDVTEAMLF 101
Query: 275 ALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332
+F G V R+C D + L +A++ + + R+ L T++ P R++
Sbjct: 102 EVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTLNYTVIKGQPCRIM--- 158
Query: 333 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE--SVCGEVYRLRLLGD 390
+ R R+ I+ N+DK + D K ++ S+ G + ++ D
Sbjct: 159 ---------WCHRDPSLRKSGNGNIFVKNLDKNI---DNKALYDTFSLFGNILSCKVAVD 206
Query: 391 YH-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+ HS FV + ESA +A++ +G+++G + V P
Sbjct: 207 ENGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGP 246
>gi|26336164|dbj|BAC31767.1| unnamed protein product [Mus musculus]
Length = 317
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 15 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 62
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 63 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 117
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 44 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 102
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 103 LAFNGVMFGDRPLKINHSNNAI 124
>gi|441658628|ref|XP_004091274.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Nomascus leucogenys]
Length = 509
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|426384534|ref|XP_004058817.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 4 [Gorilla gorilla gorilla]
Length = 509
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|395455051|ref|NP_001257421.1| splicing regulatory glutamine/lysine-rich protein 1 isoform c [Homo
sapiens]
Length = 507
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|57525681|ref|NP_001003613.1| splicing regulatory glutamine/lysine-rich protein 1 [Danio rerio]
gi|50417233|gb|AAH78219.1| Zgc:100974 [Danio rerio]
Length = 512
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G V R+ GD RFAF+EF D+ AR A
Sbjct: 166 IRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVAR-A 224
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 225 LTYNGVMFGDRPLKINHSNNAI 246
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 326 VRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL 385
V L + +A P+ P DE RT+Y N++ + T AD L F G+V +
Sbjct: 142 VATLSAVSAQPPLMGNVDPSKVDE---IRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFV 198
Query: 386 RLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
R+ GD TR AFVEF +S AL +GV+ G P+++
Sbjct: 199 RMAGDETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKI 239
>gi|74140797|dbj|BAC29709.2| unnamed protein product [Mus musculus]
Length = 401
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 125
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 126 LAFNGVMFGDRPLKINHSNNAI 147
>gi|426384530|ref|XP_004058815.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Gorilla gorilla gorilla]
gi|426384532|ref|XP_004058816.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Gorilla gorilla gorilla]
Length = 510
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|21040255|ref|NP_631907.1| splicing regulatory glutamine/lysine-rich protein 1 isoform b [Homo
sapiens]
gi|37537968|sp|Q8WXA9.1|SREK1_HUMAN RecName: Full=Splicing regulatory glutamine/lysine-rich protein 1;
AltName: Full=Serine/arginine-rich-splicing regulatory
protein 86; Short=SRrp86; AltName: Full=Splicing factor,
arginine/serine-rich 12; AltName: Full=Splicing
regulatory protein 508; Short=SRrp508
gi|18307966|gb|AAL67778.1|AF459094_1 splicing factor, arginine/serine-rich 12 [Homo sapiens]
gi|85662678|gb|AAI12344.1| SFRS12 protein [Homo sapiens]
gi|119571715|gb|EAW51330.1| splicing factor, arginine/serine-rich 12, isoform CRA_c [Homo
sapiens]
gi|127801393|gb|AAH67770.1| Splicing factor, arginine/serine-rich 12 [Homo sapiens]
Length = 508
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|27369842|ref|NP_766180.1| splicing regulatory glutamine/lysine-rich protein 1 [Mus musculus]
gi|37537951|sp|Q8BZX4.1|SREK1_MOUSE RecName: Full=Splicing regulatory glutamine/lysine-rich protein 1;
AltName: Full=Serine/arginine-rich-splicing regulatory
protein 86; Short=SRrp86; AltName: Full=Splicing factor,
arginine/serine-rich 12
gi|26329009|dbj|BAC28243.1| unnamed protein product [Mus musculus]
gi|47682645|gb|AAH70460.1| Splicing factor, arginine/serine-rich 12 [Mus musculus]
Length = 494
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 125
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 126 LAFNGVMFGDRPLKINHSNNAI 147
>gi|332233720|ref|XP_003266051.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Nomascus leucogenys]
gi|441658625|ref|XP_004091273.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Nomascus leucogenys]
Length = 510
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|18416906|ref|NP_567764.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75331668|sp|Q93W34.1|RP45C_ARATH RecName: Full=Polyadenylate-binding protein RBP45C;
Short=Poly(A)-binding protein RBP45C; AltName:
Full=RNA-binding protein 45C; Short=AtRBP45C
gi|13878153|gb|AAK44154.1|AF370339_1 putative DNA binding protein [Arabidopsis thaliana]
gi|15450814|gb|AAK96678.1| putative DNA binding protein [Arabidopsis thaliana]
gi|17104569|gb|AAL34173.1| putative DNA binding protein [Arabidopsis thaliana]
gi|20259888|gb|AAM13291.1| putative DNA binding protein [Arabidopsis thaliana]
gi|332659882|gb|AEE85282.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 415
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 39/254 (15%)
Query: 199 NGFNGGF----FANNSLIFNNHNARNGNV--NANAAVRRKKS-FGQGKRRMNSRTSLAQR 251
NG++ G+ F N++ N NG ++ A R + G G+RR +
Sbjct: 117 NGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERR---------Q 167
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTD 305
E TV+V D+ VT+ L F V +VV+ R G + F+ F D
Sbjct: 168 AEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKG---YGFVRFAD 224
Query: 306 EAEGARAALNLAGTMLGFYPVRVLPSKT----AIAPVNPTFLPRTEDEREMCARTIYCTN 361
E+E RA + G P+R P+ + P + E + TI+
Sbjct: 225 ESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGA 284
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALNCSGVV 418
+D+ VT+ D+K F GE+ +++ R FV++ AE A++ LN G
Sbjct: 285 VDQSVTEDDLKSVFGQF-GELVHVKIPA----GKRCGFVQYANRACAEQALSVLN--GTQ 337
Query: 419 LGSLPIRVSPSKTP 432
LG IR+S ++P
Sbjct: 338 LGGQSIRLSWGRSP 351
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D++ V++ QL LF GQVV R+C D S L +A++ +++ + ARA
Sbjct: 35 SLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEV 94
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L L P+RV+ S R R + I+ N+DK + + F
Sbjct: 95 LNFAALNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKTIDNKTLHETF 142
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEF---VMAESAIAALNCSGVVLGSLPIRVSP 428
S G + ++ D S FV++ A++AI +LN G+++ P+ V P
Sbjct: 143 SSF-GTILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLN--GMLINDKPVFVGP 196
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D + ++QL LF G++ ++ D N + + + F+ F+ E ++A +
Sbjct: 318 LYLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMN 377
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTI 357
G M+ P+ V F R ED + M T+
Sbjct: 378 GKMISGKPLYV------------AFAQRKEDRKAMLQVTV 405
>gi|410948711|ref|XP_003981074.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Felis catus]
Length = 510
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEAEGARAA 313
++YV D+++ VTE L +F G V R+C D SV R +A++ + + A+ RA
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRD--SVTRKSLGYAYVNYHNLADAERAL 74
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L T + P R++ S R R+ A I+ N+DK + D K
Sbjct: 75 DTLNYTNIKGQPARLMWSH------------RDPSLRKSGAGNIFVKNLDKSI---DNKA 119
Query: 374 FFE--SVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
F+ S+ G + ++ D + S FV + ESA A+ +G+ LGS + V
Sbjct: 120 LFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYV 176
>gi|410948713|ref|XP_003981075.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Felis catus]
Length = 509
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|301609359|ref|XP_002934235.1| PREDICTED: hypothetical protein LOC100329115 [Xenopus (Silurana)
tropicalis]
Length = 566
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRT+YV +++ Q T EQL F G V R+ GD RFAF+EF+D+ R A
Sbjct: 200 IRRTIYVGNLNSQTTTAEQLLEFFKQVGDVRFVRMAGDETQPTRFAFVEFSDQNSVTR-A 258
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 259 LTFNGVMFGDRPLKINHSNNAI 280
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 314 LNLAGTMLGF-YPVRVLPSKTAIAPVNPTFLPRTEDEREM----------------CART 356
L++ T LG P + P T +APV P P ++ RT
Sbjct: 144 LSVPLTSLGVNLPTPLEPVITTLAPVLPALTPAIPAVADLPQPPLMGNVDPTKVDEIRRT 203
Query: 357 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSG 416
IY N++ + T A+ L F G+V +R+ GD TR AFVEF S AL +G
Sbjct: 204 IYVGNLNSQTTTAEQLLEFFKQVGDVRFVRMAGDETQPTRFAFVEFSDQNSVTRALTFNG 263
Query: 417 VVLGSLPIRV 426
V+ G P+++
Sbjct: 264 VMFGDRPLKI 273
>gi|114599978|ref|XP_001162417.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Pan troglodytes]
Length = 510
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|39645085|gb|AAH63761.1| Sfrs12 protein, partial [Mus musculus]
Length = 407
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 125
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 126 LAFNGVMFGDRPLKINHSNNAI 147
>gi|426246385|ref|XP_004016975.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 4 [Ovis aries]
Length = 515
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|154338582|ref|XP_001565513.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062565|emb|CAM39007.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 552
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 21/182 (11%)
Query: 254 IIRRTVYVSD--IDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEF--TDEA 307
+ R +V+V D +D EE + LF VV ++C D L + ++ F T +A
Sbjct: 5 VQRTSVFVGDLPVDLPRPEEAINNLFSSIAPVVSVKVCRDIATQRSLGYGYVNFQTTADA 64
Query: 308 EGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367
E ALN G G Y +RV+ F R +R+ A I+ +D V+
Sbjct: 65 EKVIDALNFTGIAPGRY-IRVM------------FAIRDPLQRKSGANNIFVKKLDAAVS 111
Query: 368 QADVKLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
++ F S CG V ++ D HS FV+F A+ A AAL+ +G +G + V
Sbjct: 112 AKALQAAF-SRCGRVLSCKVALDSEGHSKGYGFVQFETADGAKAALDMNGAKVGDSEVEV 170
Query: 427 SP 428
+P
Sbjct: 171 AP 172
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
R +YV + +T+++L +F G++ C I + N LR FAF+ F D+ A
Sbjct: 289 RNLYVKHLPDDITDDKLREIFAPFGKITSCAIMRESNGSLRGFAFVCFEDKQHATAAMRE 348
Query: 316 LAGTML 321
L G L
Sbjct: 349 LNGRSL 354
>gi|426246381|ref|XP_004016973.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Ovis aries]
gi|426246383|ref|XP_004016974.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Ovis aries]
Length = 516
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|432104582|gb|ELK31194.1| Splicing regulatory glutamine/lysine-rich protein 1 [Myotis
davidii]
Length = 614
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 143 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 201
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 202 LAFNGVMFGDRPLKINHSNNAI 223
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 145 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 204
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 205 NGVMFGDRPLKI 216
>gi|67968786|dbj|BAE00750.1| unnamed protein product [Macaca fascicularis]
Length = 510
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|338718814|ref|XP_003363893.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Equus caballus]
Length = 512
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|4455223|emb|CAB36546.1| putative DNA binding protein [Arabidopsis thaliana]
gi|7269553|emb|CAB79555.1| putative DNA binding protein [Arabidopsis thaliana]
Length = 427
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 39/254 (15%)
Query: 199 NGFNGGF----FANNSLIFNNHNARNGNV--NANAAVRRKKS-FGQGKRRMNSRTSLAQR 251
NG++ G+ F N++ N NG ++ A R + G G+RR +
Sbjct: 117 NGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERR---------Q 167
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTD 305
E TV+V D+ VT+ L F V +VV+ R G + F+ F D
Sbjct: 168 AEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKG---YGFVRFAD 224
Query: 306 EAEGARAALNLAGTMLGFYPVRVLPSKT----AIAPVNPTFLPRTEDEREMCARTIYCTN 361
E+E RA + G P+R P+ + P + E + TI+
Sbjct: 225 ESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGA 284
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALNCSGVV 418
+D+ VT+ D+K F GE+ +++ R FV++ AE A++ LN G
Sbjct: 285 VDQSVTEDDLKSVFGQF-GELVHVKIPA----GKRCGFVQYANRACAEQALSVLN--GTQ 337
Query: 419 LGSLPIRVSPSKTP 432
LG IR+S ++P
Sbjct: 338 LGGQSIRLSWGRSP 351
>gi|9910564|ref|NP_064477.1| splicing regulatory glutamine/lysine-rich protein 1 [Rattus
norvegicus]
gi|37537914|sp|Q9JKL7.1|SREK1_RAT RecName: Full=Splicing regulatory glutamine/lysine-rich protein 1;
AltName: Full=SR-related protein of 86 kDa; AltName:
Full=Serine/arginine-rich-splicing regulatory protein
86; Short=SRrp86; AltName: Full=Splicing factor,
arginine/serine-rich 12
gi|7158880|gb|AAF37578.1|AF234765_1 serine-arginine-rich splicing regulatory protein SRRP86 [Rattus
norvegicus]
Length = 494
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + + RT+Y N++ + T AD
Sbjct: 38 AALDPNITALGEIPQPPL-----MGNVDPSKI-------DEIRRTVYVGNLNSQTTTADQ 85
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 125
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 126 LAFNGVMFGDRPLKINHSNNAI 147
>gi|149059244|gb|EDM10251.1| splicing factor, arginine/serine-rich 12, isoform CRA_b [Rattus
norvegicus]
Length = 494
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + + RT+Y N++ + T AD
Sbjct: 38 AALDPNITALGEIPQPPL-----MGNVDPSKI-------DEIRRTVYVGNLNSQTTTADQ 85
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 125
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 126 LAFNGVMFGDRPLKINHSNNAI 147
>gi|449514352|ref|XP_004177208.1| PREDICTED: LOW QUALITY PROTEIN: splicing regulatory
glutamine/lysine-rich protein 1 [Taeniopygia guttata]
Length = 633
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 321 LGFYPVRVL-PSKTAIA-----PVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
LG P L P+ TA+ P+ P DE RT+Y N++ + T AD L
Sbjct: 145 LGAIPAAALDPNITALGEIPQPPIMGNVDPSKIDE---IRRTVYVGNLNSQTTTADQLLE 201
Query: 375 FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 202 FFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
>gi|170055835|ref|XP_001863758.1| nucleolysin tia-1 [Culex quinquefasciatus]
gi|167875726|gb|EDS39109.1| nucleolysin tia-1 [Culex quinquefasciatus]
Length = 456
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 94/195 (48%), Gaps = 24/195 (12%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE--AEG 309
+E +T+YV ++DQ VTE+ L ALF G V C+I + +S +AFIE+ A+
Sbjct: 3 DEAYPKTLYVGNLDQSVTEDLLCALFGQMGAVKSCKIIREASSD-PYAFIEYASHQSAQT 61
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
A AA+N + + + A +P N P+T+ + I+ ++ ++
Sbjct: 62 ALAAMNKR-----LFLKKEIKVNWATSPGN---QPKTDTSQH---HHIFVGDLSPEIETE 110
Query: 370 DVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPI 424
++ F GE+ R++ D S AFV FV AE+AI +N G LGS I
Sbjct: 111 TLREAFAPF-GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQMMN--GQWLGSRSI 167
Query: 425 RVSPSKTPVRPRAPR 439
R + S +P APR
Sbjct: 168 RTNWSTR--KPPAPR 180
>gi|440908499|gb|ELR58509.1| Splicing factor, arginine/serine-rich 12, partial [Bos grunniens
mutus]
Length = 534
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 82 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 140
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 141 LAFNGVMFGDRPLKINHSNNAI 162
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 84 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 143
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 144 NGVMFGDRPLKI 155
>gi|260821314|ref|XP_002605978.1| hypothetical protein BRAFLDRAFT_126567 [Branchiostoma floridae]
gi|229291315|gb|EEN61988.1| hypothetical protein BRAFLDRAFT_126567 [Branchiostoma floridae]
Length = 645
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV ++D VT EQL F G+V R+ GD RFAF+EF D+ A+ A
Sbjct: 206 IRRTVYVGNLDSATVTAEQLLNFFQQVGEVKYVRMAGDETQPTRFAFVEFADQTSVAK-A 264
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 265 LQYNGIMFGNRPLKINHSNNAI 286
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N+D A+ L F GEV +R+ GD TR AFVEF S AL
Sbjct: 208 RTVYVGNLDSATVTAEQLLNFFQQVGEVKYVRMAGDETQPTRFAFVEFADQTSVAKALQY 267
Query: 415 SGVVLGSLPIRV 426
+G++ G+ P+++
Sbjct: 268 NGIMFGNRPLKI 279
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEAEGARAA 313
++YV D+++ VTE L +F G V R+C D SV R +A++ + + A+ RA
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRD--SVTRKSLGYAYVNYHNLADAERAL 74
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L T + P R++ S R R+ A I+ N+DK + D K
Sbjct: 75 DTLNYTNIKGQPARLMWSH------------RDPSLRKSGAGNIFVKNLDKSI---DNKA 119
Query: 374 FFE--SVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
F+ S+ G + ++ D + S FV + ESA A+ +G+ LGS + V
Sbjct: 120 LFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYV 176
>gi|119571716|gb|EAW51331.1| splicing factor, arginine/serine-rich 12, isoform CRA_d [Homo
sapiens]
Length = 623
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|148686563|gb|EDL18510.1| splicing factor, arginine/serine-rich 12, isoform CRA_a [Mus
musculus]
Length = 519
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 63 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 110
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 111 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 165
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 92 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 150
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 151 LAFNGVMFGDRPLKINHSNNAI 172
>gi|344272595|ref|XP_003408117.1| PREDICTED: LOW QUALITY PROTEIN: splicing regulatory
glutamine/lysine-rich protein 1-like [Loxodonta
africana]
Length = 630
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|432884719|ref|XP_004074556.1| PREDICTED: uncharacterized protein LOC101155617 [Oryzias latipes]
Length = 445
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F G+V +R+ GD TR AFVEFV +S AL
Sbjct: 165 RTVYVGNLNSQTTTADQLLEFFKQVGDVKFVRMAGDETQPTRFAFVEFVEQDSVARALTF 224
Query: 415 SGVVLGSLPIRV 426
+GV+ G P++V
Sbjct: 225 NGVMFGDRPLKV 236
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G V R+ GD RFAF+EF ++ AR A
Sbjct: 163 IRRTVYVGNLNSQTTTADQLLEFFKQVGDVKFVRMAGDETQPTRFAFVEFVEQDSVAR-A 221
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P++V S AI
Sbjct: 222 LTFNGVMFGDRPLKVNHSNNAI 243
>gi|395825410|ref|XP_003785928.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Otolemur garnettii]
Length = 617
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 151 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 198
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 199 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
RT+YV ++D VTE+ + ALF GQ+ C+I +P S + F+EF + ++ + A +
Sbjct: 13 RTLYVGNLDSGVTEDLVCALFSQMGQIKGCKIIHEPGSD-PYCFVEFVNHSDASSAITAM 71
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
M +RV + +AI P P T I+ ++ ++ +D++ F
Sbjct: 72 NARMCLGRELRVNWASSAIQQQTP-HRPDTSKHHH-----IFVGDLSPQIETSDLREAF- 124
Query: 377 SVCGEVYRLRLLGD--YHHSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRV 426
S GE+ R++ D S FV F AE+AI ++ G LGS IR
Sbjct: 125 SPFGEISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIHTMD--GSWLGSRAIRT 177
>gi|126317239|ref|XP_001381458.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Monodelphis domestica]
Length = 613
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|312371659|gb|EFR19788.1| hypothetical protein AND_21810 [Anopheles darlingi]
Length = 440
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 32/199 (16%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRI----CGDPNSVLRFAFIEFTDE- 306
EE +T+YV ++D VTEE L LF G V C+I DP +AFIE+
Sbjct: 3 EESYPKTLYVGNLDTSVTEELLCTLFSQMGTVKSCKIIREASNDP-----YAFIEYASHT 57
Query: 307 -AEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK 365
A+ A AA+N F+ + + A +P N P+T+ + I+ ++ +
Sbjct: 58 SAQTALAAMNKR-----FFLKKEIKVNWATSPGN---QPKTDTSQHY---HIFVGDLSPE 106
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLG 420
+ ++ F GE+ R++ D S AFV FV AE+AI +N G LG
Sbjct: 107 IETETLREAFAPF-GEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIQMMN--GQWLG 163
Query: 421 SLPIRVSPSKTPVRPRAPR 439
S IR + S +P APR
Sbjct: 164 SRSIRTNWSTR--KPPAPR 180
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEAEGARAA 313
++YV D+++ VTE L +F G V R+C D SV R +A++ + + A+ RA
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRD--SVTRKSLGYAYVNYHNLADAERAL 74
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L T + P R++ S R R+ A I+ N+DK + D K
Sbjct: 75 DTLNYTNIKGQPARLMWSH------------RDPSLRKSGAGNIFVKNLDKSI---DNKA 119
Query: 374 FFE--SVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
F+ S+ G + ++ D + S FV + ESA A+ +G+ LGS + V
Sbjct: 120 LFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYV 176
>gi|403267427|ref|XP_003925834.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Saimiri boliviensis boliviensis]
Length = 630
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|355691354|gb|EHH26539.1| Serine/arginine-rich-splicing regulatory protein 86 [Macaca
mulatta]
gi|355749961|gb|EHH54299.1| Serine/arginine-rich-splicing regulatory protein 86 [Macaca
fascicularis]
Length = 620
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 207 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 265
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 266 LAFNGVMFGDRPLKINHSNNAI 287
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 209 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 268
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 269 NGVMFGDRPLKI 280
>gi|410300176|gb|JAA28688.1| splicing regulatory glutamine/lysine-rich protein 1 [Pan
troglodytes]
Length = 626
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|296194448|ref|XP_002744950.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Callithrix jacchus]
Length = 630
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 75 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 134
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 135 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 182
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D Y +S FV + AE+A A+ + +G++L
Sbjct: 183 -AAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLL 227
>gi|332233718|ref|XP_003266050.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Nomascus leucogenys]
Length = 626
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|410929297|ref|XP_003978036.1| PREDICTED: uncharacterized protein LOC101067881 [Takifugu rubripes]
Length = 451
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G V R+ GD RFAF+EF+++ AR A
Sbjct: 163 IRRTVYVGNLNSQTTTADQLLEFFRQVGSVKFVRMAGDETQPTRFAFVEFSEQESVAR-A 221
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 222 LTFNGVMFGDRPLKINHSNNAI 243
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F G V +R+ GD TR AFVEF ES AL
Sbjct: 165 RTVYVGNLNSQTTTADQLLEFFRQVGSVKFVRMAGDETQPTRFAFVEFSEQESVARALTF 224
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 225 NGVMFGDRPLKI 236
>gi|26333193|dbj|BAC30314.1| unnamed protein product [Mus musculus]
Length = 318
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 125
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 126 LAFNGVMFGDRPLKINHSNNAI 147
>gi|410948709|ref|XP_003981073.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Felis catus]
Length = 626
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|395510384|ref|XP_003759457.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Sarcophilus harrisii]
Length = 596
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 163 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 221
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 222 LAFNGVMFGDRPLKINHSNNAI 243
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 165 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 224
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 225 NGVMFGDRPLKI 236
>gi|397470471|ref|XP_003806845.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Pan paniscus]
Length = 626
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|426384528|ref|XP_004058814.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Gorilla gorilla gorilla]
Length = 626
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|116089325|ref|NP_001070667.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a [Homo
sapiens]
gi|119571714|gb|EAW51329.1| splicing factor, arginine/serine-rich 12, isoform CRA_b [Homo
sapiens]
Length = 624
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|402871715|ref|XP_003899799.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Papio anubis]
gi|387541364|gb|AFJ71309.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a
[Macaca mulatta]
Length = 626
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN 315
++YV D+D VTE L +F GQV R+C B L +A++ + E A
Sbjct: 61 SLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALDT 120
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
LA + R++ S+ R R+ ++ N+ + D K +
Sbjct: 121 LAFCDIKGKQCRIMWSQ------------RDPSMRKKGTGNVFIKNLHPDI---DNKTLY 165
Query: 376 E--SVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
+ S G++ ++ D H HS FV + AESA AA+ N +G++L ++ + V+P
Sbjct: 166 DTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAP 222
>gi|354474059|ref|XP_003499249.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Cricetulus griseus]
gi|344246968|gb|EGW03072.1| Splicing factor, arginine/serine-rich 12 [Cricetulus griseus]
Length = 611
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 183 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 241
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 242 LAFNGVMFGDRPLKINHSNNAI 263
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 154 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 201
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 202 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 256
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D V + QL +F G VV R+C D S L +A++ + A+ ARA
Sbjct: 126 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL-- 183
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
ML F P+ P + + +P+ R+ I+ N+DK + D K
Sbjct: 184 ---EMLNFTPINGRPIRIMYSNRDPSL-------RKSGTANIFIKNLDKSI---DNKALH 230
Query: 376 ESVC--GEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
++ C G + ++ D S FV++ E+A AA+ +G+++ + V P
Sbjct: 231 DTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 287
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D V +E+L LF G + C++ D N R + F+ F + +RA +
Sbjct: 409 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 468
Query: 318 GTMLGFYPVRV 328
M+G P+ V
Sbjct: 469 NKMVGNKPLYV 479
>gi|194223833|ref|XP_001492097.2| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Equus caballus]
Length = 628
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 15/163 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
E+ + +YV D+D +V+E +L +F G G +V R+C D S L +A++ F ++ +
Sbjct: 25 ELHKAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDAS 84
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
+A L T L P+R++ S P R+ ++ N+D + A
Sbjct: 85 KALACLNHTKLMGKPMRIMWSHRDPLP------------RKTGLANLFVKNLDPSINSAS 132
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413
++ F G + ++ + S FV+F +SA AALN
Sbjct: 133 LQDIFCKF-GNILSCKVAEENGKSKCFGFVQFDSDDSATAALN 174
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 21/186 (11%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R + R+ + R+T ++V ++D + L +F G ++ C++ + F F
Sbjct: 101 RIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENGKSKCFGF 160
Query: 301 IEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYC 359
++F D + A AALN L TML K R E E +Y
Sbjct: 161 VQF-DSDDSATAALNALNDTMLD--------GKKLFVSKFVKKCERKEASEETKFTNVYV 211
Query: 360 TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVM---AESAIAALNCS 415
N+ + +T+ ++ F S G+V + ++ D + +R FV F A+ A+ ALN
Sbjct: 212 KNLGEDLTEDIIRDKF-SEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN-- 268
Query: 416 GVVLGS 421
G +LGS
Sbjct: 269 GAMLGS 274
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 227 AAVRRKKSF-GQGKRRMNSRTSLAQREEIIR--------RTVYVSDIDQQVTEEQLAALF 277
A + KK F G+ +++ + L +E++ +YV ++D V +++L F
Sbjct: 270 AMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHF 329
Query: 278 VGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLAGTML 321
CGQ+ ++ + + + F F+ F+ E +A L GT+L
Sbjct: 330 SSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLL 374
>gi|301767860|ref|XP_002919343.1| PREDICTED: hypothetical protein LOC100466086 [Ailuropoda
melanoleuca]
gi|281341776|gb|EFB17360.1| hypothetical protein PANDA_007970 [Ailuropoda melanoleuca]
Length = 628
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|327263062|ref|XP_003216340.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Anolis carolinensis]
Length = 626
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 181 RTVYVGNLNSQTTTADQLLEFFKPVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 240
Query: 415 SGVVLGSLPIRV 426
+GVV G P+++
Sbjct: 241 NGVVFGDRPLKI 252
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 179 IRRTVYVGNLNSQTTTADQLLEFFKPVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 237
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G + G P+++ S AI
Sbjct: 238 LAFNGVVFGDRPLKINHSNNAI 259
>gi|431907792|gb|ELK11399.1| Splicing factor, arginine/serine-rich 12 [Pteropus alecto]
Length = 630
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|426246379|ref|XP_004016972.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Ovis aries]
Length = 632
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|329663695|ref|NP_001193066.1| splicing regulatory glutamine/lysine-rich protein 1 [Bos taurus]
Length = 632
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|345794152|ref|XP_544361.3| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Canis lupus familiaris]
Length = 626
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|444510679|gb|ELV09695.1| Splicing regulatory glutamine/lysine-rich protein 1 [Tupaia
chinensis]
Length = 592
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 145 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 203
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 204 LAFNGVMFGDRPLKINHSNNAI 225
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 116 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 163
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 164 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 218
>gi|351713063|gb|EHB15982.1| Splicing factor, arginine/serine-rich 12 [Heterocephalus glaber]
Length = 535
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 119 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 166
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D Y +S FV + AE+A A+ + +G++L
Sbjct: 167 -AAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLL 211
>gi|291395458|ref|XP_002714054.1| PREDICTED: splicing factor, arginine/serine-rich 12 [Oryctolagus
cuniculus]
Length = 618
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|363744206|ref|XP_424756.3| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Gallus gallus]
Length = 621
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 321 LGFYPVRVL-PSKTAIA-----PVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
LG P L P+ TA+ P+ P DE RT+Y N++ + T AD L
Sbjct: 145 LGAIPAAALDPNITALGEIPQPPIMGNVDPSKIDE---IRRTVYVGNLNSQTTTADQLLE 201
Query: 375 FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 202 FFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 119 LNYTLIKGRPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDTAIDNKALHDTF 166
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D Y +S FV + AE+A A+ + +G++L
Sbjct: 167 -AAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLL 211
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 119 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 166
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D Y +S FV + AE+A A+ + +G++L
Sbjct: 167 -AAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLL 211
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 119 LNYTLIKGRPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDTAIDNKALHDTF 166
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D Y +S FV + AE+A A+ + +G++L
Sbjct: 167 -AAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLL 211
>gi|348553835|ref|XP_003462731.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Cavia porcellus]
Length = 556
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARA 312
+ ++YV D++ V+E QL LF GQVV R+C D L +A++ + + RA
Sbjct: 26 VSTSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRA 85
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L ++L P+R++ F R R+ I+ N+DK + +
Sbjct: 86 LELLNFSVLNGNPIRIM------------FSHRDPSIRKSGTANIFIKNLDKTIDNKALH 133
Query: 373 LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F + G + + S FV+F ESA+ A+ +G++L + V P
Sbjct: 134 DTFSAFGGILSCKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGP 190
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 22/131 (16%)
Query: 250 QREEIIRR----TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFT 304
+R+E I + +Y+ ++D V +E+L LF G + C++ DP R + F+ F+
Sbjct: 299 ERKERIEKYQGVNLYLKNLDDTVDDEKLRELFADYGTITSCKVMRDPQGQSRGSGFVAFS 358
Query: 305 DEAEGARAALNLAGTMLGFYPVRVLPS-----------------KTAIAPVNPTFLPRTE 347
E RA + G M+G P+ V + +T+++P PT LP
Sbjct: 359 SPEEATRAVTEMNGKMVGSKPLYVALAQRKEERRARLQAAFAQMRTSVSPAVPTSLPMYH 418
Query: 348 DEREMCARTIY 358
M + Y
Sbjct: 419 PGPGMSPQMPY 429
>gi|50949479|emb|CAH10414.1| hypothetical protein [Homo sapiens]
Length = 331
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 17/187 (9%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEF 303
T ++ + ++YV D+D V+E +L +F GQVV R+C D L +A++ +
Sbjct: 15 TPISGSSPYVAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNY 74
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNID 363
+ ++A L T++ P+R++ S R R+ A I+ N++
Sbjct: 75 GTHQDASQALELLNFTLVKGKPIRIMYSH------------RDPSIRKSGAANIFIKNLE 122
Query: 364 KKVTQADVKLFFESVCGEVYRLR-LLGDYHHSTRIAFVEFVMAESA-IAALNCSGVVLGS 421
K + + F S G + R ++ D +S FV+F ESA IA +G+++
Sbjct: 123 KSIDNKALHDTF-SAFGTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLIND 181
Query: 422 LPIRVSP 428
+ V+P
Sbjct: 182 RQVSVAP 188
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 8/176 (4%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
VYV ++ + T+E L +F G G + + D + + F F+ F + + A A NL
Sbjct: 206 VYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLN 265
Query: 318 GTMLG---FYPVRVLPSKTAIAPVNPTFLP-RTEDEREMCARTIYCTNIDKKVTQADVKL 373
G ++ +Y R A + F R E E + +Y NID + ++
Sbjct: 266 GKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRE 325
Query: 374 FFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
F +V G V +++ S FV F E A+ A+N +G ++GS P+ V+
Sbjct: 326 LF-AVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVA 380
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 214 NNHNARNGNVNANAAVRRKKSF--GQGKRRMNSRTSLAQREEIIRR---------TVYVS 262
N +A N N N + +K + G+ +++ L + E +R+ +Y+
Sbjct: 253 NVDDAANAVENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLK 312
Query: 263 DIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEAEGARAALNLAGTML 321
+ID + +E+L LF G V C++ P + F+ F+ E +A ++ G M+
Sbjct: 313 NIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMV 372
Query: 322 GFYPVRV 328
G P+ V
Sbjct: 373 GSKPLYV 379
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 19/165 (11%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
E+ + +YV D+D +V+E +L +F G G +V R+C D S L +A++ F ++ +
Sbjct: 25 ELHKAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDAS 84
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
+A L T L P+R++ S P R+ ++ N+D + A
Sbjct: 85 KALACLNHTKLMGKPMRIMWSHRDPLP------------RKTGLANLFVKNLDPSINSAS 132
Query: 371 VKLFFESVC--GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413
++ F C G + ++ + S FV+F +SA AALN
Sbjct: 133 LQDIF---CKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAALN 174
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 21/191 (10%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R + R+ + R+T ++V ++D + L +F G ++ C++ + F F
Sbjct: 101 RIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENGKSKCFGF 160
Query: 301 IEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYC 359
++F D + A AALN L TM L K R E E +Y
Sbjct: 161 VQF-DSDDSATAALNALNDTM--------LDGKKLFVSKFVKKCERKEASEETKFTNVYV 211
Query: 360 TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVM---AESAIAALNCS 415
N+ + +T+ ++ F S G+V + ++ D + +R FV F A+ A+ ALN
Sbjct: 212 KNLGEDLTEDIIRDKF-SEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN-- 268
Query: 416 GVVLGSLPIRV 426
G +LGS + V
Sbjct: 269 GAMLGSKKLFV 279
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 227 AAVRRKKSF-GQGKRRMNSRTSLAQREEIIR--------RTVYVSDIDQQVTEEQLAALF 277
A + KK F G+ +++ + L +E++ +YV ++D V +++L F
Sbjct: 270 AMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHF 329
Query: 278 VGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLAGTML 321
CGQ+ ++ + + + F F+ F+ E +A L GT+L
Sbjct: 330 SSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLL 374
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 119 LNYTLIKGRPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDTAIDNKALHDTF 166
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D Y +S FV + AE+A A+ + +G++L
Sbjct: 167 -AAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLL 211
>gi|149059243|gb|EDM10250.1| splicing factor, arginine/serine-rich 12, isoform CRA_a [Rattus
norvegicus]
Length = 610
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 183 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 241
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 242 LAFNGVMFGDRPLKINHSNNAI 263
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 154 AALDPNITALGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 201
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 202 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 256
>gi|148686566|gb|EDL18513.1| splicing factor, arginine/serine-rich 12, isoform CRA_d [Mus
musculus]
Length = 626
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 199 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 257
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 258 LAFNGVMFGDRPLKINHSNNAI 279
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 170 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 217
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 218 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 272
>gi|74217177|dbj|BAC34905.2| unnamed protein product [Mus musculus]
Length = 513
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 183 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 241
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 242 LAFNGVMFGDRPLKINHSNNAI 263
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 185 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 244
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 245 NGVMFGDRPLKI 256
>gi|193787205|dbj|BAG52411.1| unnamed protein product [Homo sapiens]
Length = 514
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|330812809|ref|XP_003291310.1| hypothetical protein DICPUDRAFT_38760 [Dictyostelium purpureum]
gi|325078525|gb|EGC32172.1| hypothetical protein DICPUDRAFT_38760 [Dictyostelium purpureum]
Length = 587
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 18/180 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+ V+ ++ +E+++ LF G + +I + AFI F D A NL
Sbjct: 117 KIVWAGNVHPDSSEDEIRGLFSQFGYIQAIKII----PAKQCAFITFGDVNAAIAAQYNL 172
Query: 317 AGTMLGFYPVRVLPSKTAIAPV-------NPTF-LPRTEDEREMCARTIYCTNIDKKVTQ 368
GT + YP+++ K AP P F P + E+ + ++ NI VT
Sbjct: 173 NGTPIRGYPLKLGFGKVENAPAAFQQQQQQPHFNKPPHHLQEEVPTKNLWLGNIGPSVTS 232
Query: 369 ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVS 427
+K F+ G V +R+L AFV F ESAIAA N +G ++ +P++++
Sbjct: 233 ETLKQLFDQF-GNVDNIRILV----GRGCAFVNFFTVESAIAARNNLTGTMVCGMPLKIN 287
>gi|940288|gb|AAA74208.1| protein localized in the nucleoli of pea nuclei; ORF; putative
[Pisum sativum]
Length = 611
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
+T++V ++ V + + F CG+VVD R+ D + + F +EF AE A++AL
Sbjct: 355 KTLFVGNLSFSVQRSDIESFFQECGEVVDVRLASDEDGRFKGFGHVEFA-TAEAAQSALE 413
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT---EDEREMCARTIYCTNIDKKVTQADVK 372
L G L VR+ +A F P + ++ ++T++ DK + + +++
Sbjct: 414 LNGQELLQRGVRL-----DLARERGAFTPNSTGNQNSGRGQSQTVFVRGFDKSLGEDEIR 468
Query: 373 LFFE---SVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427
E + CG+ R+ + DY +S A+++F ++S A+ G L P+ +
Sbjct: 469 AKLEQHFASCGQASRVSIPKDYDTGYSKGFAYMDFKDSDSFNKAIELHGSELDGYPLSID 528
Query: 428 PSK 430
+K
Sbjct: 529 EAK 531
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV D+D VT+ QL LF GQVV R+C D + L + ++ +++ + ARA
Sbjct: 32 VTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 91
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T L P+R++ S R R+ I+ N+DK + +
Sbjct: 92 LDVLNFTPLNNRPIRIMYSH------------RDPSIRKSGQGNIFIKNLDKAIDHKALH 139
Query: 373 LFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F S G + ++ D S FV+F E+A A+ +G++L + V P
Sbjct: 140 DTFSSF-GNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGP 196
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D + +E+L LF G + C++ DPN V R + F+ F+ E +RA L +
Sbjct: 318 LYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMN 377
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 378 GKMVASKPLYV 388
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL 314
R V+V ++D+ + +QL +F G+V+ C++ D + V + + F++F + A
Sbjct: 30 RGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACN 89
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
GT++ + V P F+ R + ++ +Y N+ + T AD+K
Sbjct: 90 FHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLKRL 138
Query: 375 FESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVL 419
F GE+ ++ D S R FV F AE+A+ A+ +GVV+
Sbjct: 139 FGEF-GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVV 184
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 236 GQGKRRMNSRTSLAQR---EEIIR-------RTVYVSDIDQQVTEEQLAALFVGCGQVVD 285
G+ +R+ N L + E+IIR +YV ++D V +L LF G +
Sbjct: 192 GRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITS 251
Query: 286 CRICGDPNSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
C++ N + + F+EF+ E ++A L + G M+G P+ V
Sbjct: 252 CKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
>gi|297294417|ref|XP_001087835.2| PREDICTED: hypothetical protein LOC697731 isoform 1 [Macaca
mulatta]
Length = 516
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|328852755|gb|EGG01898.1| hypothetical protein MELLADRAFT_91734 [Melampsora larici-populina
98AG31]
Length = 1071
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAAL 314
R T+YV++ + T+E + + F G++ D R S RF +++FT + A++AL
Sbjct: 719 RSTLYVTNFPEDATDEWIRSKFGEFGKIFDVRWPSKRFKSTRRFCYVQFTS-PDSAQSAL 777
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
L T V PS+ ++ + + R +Y T + K V +AD++
Sbjct: 778 ALHNT-------EVAPSQKMSVFISDPLRKKARTDVGANDRELYITCLTKFVQEADLRKL 830
Query: 375 FESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
F+ G++ +R+ L + HS AFVEF SA AAL+ + V L I V+ S +
Sbjct: 831 FQPF-GDIKGVRMILNEDGHSKGFAFVEFETEASAKAALSMNNVELKKRRIGVTISNS 887
>gi|297792959|ref|XP_002864364.1| hypothetical protein ARALYDRAFT_495572 [Arabidopsis lyrata subsp.
lyrata]
gi|297310199|gb|EFH40623.1| hypothetical protein ARALYDRAFT_495572 [Arabidopsis lyrata subsp.
lyrata]
Length = 398
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ +VT+ L+ F V +VV R G + F+ F DE E R
Sbjct: 159 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVVDRTTGRSKG---YGFVRFADENEQMR 215
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIA-PVNPTFLPRTE----DEREMCARTIYCTNIDKKV 366
A + G P+R+ P+ A P+ P T+ + + TI+ +D V
Sbjct: 216 AMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGGNAGDSDPNNTTIFVGGLDANV 275
Query: 367 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALNCSGVVLGSLP 423
T ++K F GE+ +++ R FV++ AE A++ LN G LG
Sbjct: 276 TDDELKSIFGQF-GELLHVKI----PPGKRCGFVQYANRATAEHALSVLN--GTQLGGQS 328
Query: 424 IRVSPSKTP 432
IR+S ++P
Sbjct: 329 IRLSWGRSP 337
>gi|356548971|ref|XP_003542872.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 409
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 27/201 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ VT+ L F V +VV R+ G + F+ F+DE+E R
Sbjct: 161 TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKG---YGFVRFSDESEQVR 217
Query: 312 AALNLAGTMLGFYPVRVLPS--KTAIAPVNPTF-----LPR-TEDEREMCARTIYCTNID 363
A + G + P+R+ P+ KT P P+ +++E + TI+ N+D
Sbjct: 218 AMTEMQGVLCSTRPMRIGPASNKTPTTQSQPKASYQNSQPQGSQNENDPNNTTIFVGNLD 277
Query: 364 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALNCSGVVLG 420
VT ++ F S GE+ +++ R FV+F AE A+ LN G +LG
Sbjct: 278 PNVTDDHLRQVF-SQYGELVHVKIPA----GKRCGFVQFADRSCAEEALRVLN--GTLLG 330
Query: 421 SLPIRVSPSKTPVRPRAPRLP 441
+R+S ++P +A P
Sbjct: 331 GQNVRLSWGRSPSNKQAQADP 351
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 16/159 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D +T+ QL LF+ GQV+ R+C D ++ L + ++ +++ + ARA
Sbjct: 19 SLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDL 78
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T L P+R++ S R R+ I+ N+DK + + F
Sbjct: 79 LNFTPLNGKPIRIMYSH------------RDPSIRKSGTANIFIKNLDKSIDNKALHDTF 126
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN 413
S G + ++ D S FV+F ESA A++
Sbjct: 127 -SAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAID 164
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D + +++L LF G + C++ DP+ + R + F+ F+ E +RA +
Sbjct: 302 LYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMN 361
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 362 GKMVVSKPLYV 372
>gi|350594366|ref|XP_003134051.3| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1,
partial [Sus scrofa]
Length = 587
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 218 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 276
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 277 LAFNGVMFGDRPLKINHSNNAI 298
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 220 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 279
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 280 NGVMFGDRPLKI 291
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 16/159 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D +T+ QL LF+ GQV+ R+C D ++ L + ++ +++ + ARA
Sbjct: 19 SLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDL 78
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T L P+R++ S R R+ I+ N+DK + + F
Sbjct: 79 LNFTPLNGKPIRIMYSH------------RDPSIRKSGTANIFIKNLDKSIDNKALHDTF 126
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN 413
S G + ++ D S FV+F ESA A++
Sbjct: 127 -SAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAID 164
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D + +++L LF G + C++ DP+ + R + F+ F+ E +RA +
Sbjct: 302 LYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMN 361
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 362 GKMVVSKPLYV 372
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
+Y+ ++D V+E+ L F G++V I D N + R +AF+ F + + RAA +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 318 GTMLG---FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--IYCTNIDKKVTQADVK 372
GT G Y R + F + E E++M A+ IY N++ VT+ +++
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHE-EQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 373 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVLGSLPIRVS 427
F S CG + +L+ D ++ FV F E AI A+ G + P+ V+
Sbjct: 322 KHF-SQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVA 377
>gi|170057956|ref|XP_001864710.1| fuse-binding protein-interacting repressor siahbp1 [Culex
quinquefasciatus]
gi|167877220|gb|EDS40603.1| fuse-binding protein-interacting repressor siahbp1 [Culex
quinquefasciatus]
Length = 661
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 25/218 (11%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ ++++ S+ + QR++ + VYV I ++ E+ + A F+ G +
Sbjct: 143 VLMKQTLAHQQQQLASQRTQVQRQQALALMCRVYVGSISFELKEDTIRAAFLPFGPIKSI 202
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + EGA+ AL + G MLG ++V P+ +
Sbjct: 203 NMSWDPITQKHKGFAFVEY-EIPEGAQLALEQMNGAMLGGRNIKV---------GRPSNM 252
Query: 344 PRTE---DEREMCART---IYCTNIDKKVTQADVKLFFESVCGEVYRLRL-LGDYHHSTR 396
P+ + DE + A+ IY +I +T+ D+K FE+ G + ++ G HS +
Sbjct: 253 PQAQQVIDEIQEEAKNYNRIYIASIHPDLTEEDIKSVFEAF-GAIATCKMSQGSSAHSHK 311
Query: 397 -IAFVEFVMAESAIAALNCSGVV-LGSLPIRVSPSKTP 432
AF+E+ +SAI A+ + LG +RV S TP
Sbjct: 312 GYAFIEYQTNQSAIEAIASMNLFDLGGQLLRVGRSITP 349
>gi|449454730|ref|XP_004145107.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
gi|449472157|ref|XP_004153511.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
Length = 408
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 36/196 (18%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ VT+ L F V +VV R+ G + F++F DE+E R
Sbjct: 158 TIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTG---RTKGYGFVKFGDESEQIR 214
Query: 312 AALNLAGTMLGFYPVRVLP------------SKTAIAPVNPTFLPRTEDEREMCARTIYC 359
A + G P+R+ P SKT+ NP P T++E + TI+
Sbjct: 215 AMTEMNGVHCSSRPMRIGPAANKNTSGSQQFSKTSYQ--NP---PGTQNENDPNNTTIFV 269
Query: 360 TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALNCSG 416
N+D VT ++ F S GE+ +++ R FV+F AE A+ LN G
Sbjct: 270 GNLDSNVTDEHLRQVF-SQYGELVHVKIPA----GKRCGFVQFSDRSCAEEALRILN--G 322
Query: 417 VVLGSLPIRVSPSKTP 432
+G IR+S ++P
Sbjct: 323 TPIGGQNIRLSWGRSP 338
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL LF QVV R+C D + L + ++ +TD + ARA
Sbjct: 170 SLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALDV 229
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T L P+R++ S R R+ I+ N+DK + + F
Sbjct: 230 LNFTPLNGKPIRIMYSH------------RDPSIRKSGTGNIFIKNLDKGIDHKALHDTF 277
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
S G + ++ D ++ FV+F E+A A++ +G++L + V P
Sbjct: 278 -SAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGP 331
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D + +++L LF G + C++ DPN + R + F+ F+ E +RA +
Sbjct: 453 LYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMN 512
Query: 318 GTMLGFYPVRV 328
M+ P+ V
Sbjct: 513 SKMVVSKPLYV 523
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 25/177 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEAEGARAA 313
++YV D+ + VTE L +F G V+ R+C D SV R +A++ + + A+ RA
Sbjct: 17 SLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRD--SVTRKSLGYAYVNYHNLADAERAL 74
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L T + P R++ S R R+ I+ N+DK + D K
Sbjct: 75 DTLNYTNIKGQPARLMWSH------------RDPSLRKSGTGNIFVKNLDKTI---DNKA 119
Query: 374 FFE--SVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
F+ S+ G + ++ D + S FV + ESA A+ +G+ LGS + V
Sbjct: 120 LFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYV 176
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 164 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLL 208
>gi|307178104|gb|EFN66931.1| Nucleolysin TIAR [Camponotus floridanus]
Length = 393
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 14/178 (7%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
EE RT+YV ++D V+E+ L ALF G V C+I +P + +AF+EFT+ A
Sbjct: 3 EESNPRTLYVGNLDASVSEDLLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQSAAT 61
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
A LA + + + A +P N P+ + I+ ++ ++ +
Sbjct: 62 A---LAAMNKRSFLDKEMKVNWATSPGN---QPKLDTSNH---HHIFVGDLSPEIETQTL 112
Query: 372 KLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNC-SGVVLGSLPIRV 426
K F GE+ R++ D S AFV FV A AA+N +G LGS IR
Sbjct: 113 KEAFAPF-GEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRT 169
>gi|357480263|ref|XP_003610417.1| RNA-binding protein [Medicago truncatula]
gi|355511472|gb|AES92614.1| RNA-binding protein [Medicago truncatula]
Length = 411
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 29/201 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ V++ L +F V +VV R G + F+ F DE+E R
Sbjct: 168 TIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTG---RTKGYGFVRFADESEQMR 224
Query: 312 AALNLAGTMLGFYPVRVLP-------SKTAIAPV-NPTFLPRTEDEREMCARTIYCTNID 363
A + G + P+R+ P ++T+ A NP ++E + TI+ N+D
Sbjct: 225 AMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQ--GGAQNENDPNNTTIFVGNLD 282
Query: 364 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALNCSGVVLG 420
VT +K F + GE+ +++ R FV+F AE A+ LN G +LG
Sbjct: 283 PNVTDEHLKQVF-TQYGELVHVKI----PSGKRCGFVQFADRSSAEEALRVLN--GTLLG 335
Query: 421 SLPIRVSPSKTPVRPRAPRLP 441
+R+S ++P + + P
Sbjct: 336 GQNVRLSWGRSPANKQTQQDP 356
>gi|115620271|ref|XP_781643.2| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like [Strongylocentrotus purpuratus]
Length = 890
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 97/201 (48%), Gaps = 11/201 (5%)
Query: 242 MNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAF 300
MN + +R+ RTV+V ++ VTE+++ +F CG V D R+ + + + +
Sbjct: 603 MNPKKKKPERDNNDPRTVFVKNLGYNVTEKRIRKVFSECGTVRDVRMVTNYQKKFKGYCY 662
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKT-AIAPVNPTFLPRTEDEREMCARTIYC 359
+EF DE E A+ AL + P+ V PSK + AP FL E +M ++
Sbjct: 663 VEFEDE-ESAKKALKKDRETINDRPMYVDPSKDRSGAPAEKKFLY----ENKMEKNKLFV 717
Query: 360 TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAI-AALNCSGV 417
+ + + +T +++ F S G++ +R++ + +A+V+F SA A +
Sbjct: 718 SGLPRTLTTEELEKTF-SKFGKLKGVRIVTFKSGVPKGLAYVDFENEASATRAVMGLDNT 776
Query: 418 VLGSLPIRVSPSKTPVRPRAP 438
+G I V+ S P R +AP
Sbjct: 777 QIGEHTITVAISNPPTR-KAP 796
>gi|388507756|gb|AFK41944.1| unknown [Medicago truncatula]
Length = 411
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 29/201 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ V++ L +F V +VV R G + F+ F DE+E R
Sbjct: 168 TIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTG---RTKGYGFVRFADESEQMR 224
Query: 312 AALNLAGTMLGFYPVRVLP-------SKTAIAPV-NPTFLPRTEDEREMCARTIYCTNID 363
A + G + P+R+ P ++T+ A NP ++E + TI+ N+D
Sbjct: 225 AMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQ--GGAQNENDPNNTTIFVGNLD 282
Query: 364 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALNCSGVVLG 420
VT +K F + GE+ +++ R FV+F AE A+ LN G +LG
Sbjct: 283 PNVTDEHLKQVF-TQYGELVHVKI----PSGKRCGFVQFADRSSAEEALRVLN--GTLLG 335
Query: 421 SLPIRVSPSKTPVRPRAPRLP 441
+R+S ++P + + P
Sbjct: 336 GQNVRLSWGRSPANKQTQQDP 356
>gi|332029721|gb|EGI69600.1| Nucleolysin TIAR [Acromyrmex echinatior]
Length = 393
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE--AEG 309
EE RT+YV ++D V+E+ L ALF G V C+I +P + +AF+EFT+ A
Sbjct: 3 EESNPRTLYVGNLDTSVSEDLLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 61
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
A AA+N + + + A +P N L + I+ ++ ++
Sbjct: 62 ALAAMNKRSFL-----DKEMKVNWATSPGNQPKLDTSNHHH------IFVGDLSPEIETQ 110
Query: 370 DVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNC-SGVVLGSLPIRV 426
+K F GE+ R++ D S AFV FV A AA+N +G LGS IR
Sbjct: 111 TLKEAFAPF-GEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRT 169
Query: 427 SPS 429
+ S
Sbjct: 170 NWS 172
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 56 SLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 164 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLL 208
>gi|28703790|gb|AAH47322.1| Similar to expressed sequence AI450757, partial [Homo sapiens]
Length = 386
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|322795213|gb|EFZ18035.1| hypothetical protein SINV_11488 [Solenopsis invicta]
Length = 455
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE--AEG 309
EE RT+YV ++D V+E+ L ALF G V C+I +P + +AF+EFT+ A
Sbjct: 75 EESNPRTLYVGNLDTTVSEDLLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 133
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
A AA+N + + + A +P N L + I+ ++ ++
Sbjct: 134 ALAAMNKRSFL-----EKEMKVNWATSPGNQPKLDTSNHHH------IFVGDLSPEIETQ 182
Query: 370 DVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNC-SGVVLGSLPIRV 426
+K F GE+ R++ D S AFV FV A AA+N +G LGS IR
Sbjct: 183 TLKEAFAPF-GEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRT 241
Query: 427 SPS 429
+ S
Sbjct: 242 NWS 244
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 56 SLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 164 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLL 208
>gi|380792715|gb|AFE68233.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a,
partial [Macaca mulatta]
Length = 394
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 180 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 238
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 239 LAFNGVMFGDRPLKINHSNNAI 260
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 241
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 242 NGVMFGDRPLKI 253
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 25/177 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEAEGARAA 313
++YV D+ + VTE L +F G V+ R+C D SV R +A++ + + A+ RA
Sbjct: 17 SLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRD--SVTRKSLGYAYVNYHNLADAERAL 74
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L T + P R++ S R R+ I+ N+DK + D K
Sbjct: 75 DTLNYTNIKGQPARLMWSH------------RDPSLRKSGTGNIFVKNLDKTI---DNKA 119
Query: 374 FFE--SVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
F+ S+ G + ++ D + S FV + ESA A+ +G+ LGS + V
Sbjct: 120 LFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYV 176
>gi|147859325|emb|CAN83958.1| hypothetical protein VITISV_039907 [Vitis vinifera]
Length = 410
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 31/210 (14%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVG------CGQVVDCR 287
+ G G+RR + T++V D+ VT+ L F G +VV R
Sbjct: 154 TLGAGERRADDTPDY---------TIFVGDLASDVTDYVLQETFRGHYPSVKGAKVVTDR 204
Query: 288 ICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTF--LPR 345
G + F+ F DE E RA + G P+R+ P+ T PV +F
Sbjct: 205 TTGRSKG---YGFVRFGDEGEQLRAMNEMNGMFCSTRPMRIGPAATK-KPVGASFQNTQG 260
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF--- 402
+ E + TI+ +D VT ++ F S GE+ +++ R FV+F
Sbjct: 261 XQGESDPNNTTIFVGGLDSNVTDDYLRQVF-SQYGELVHVKI----PVGKRCGFVQFANR 315
Query: 403 VMAESAIAALNCSGVVLGSLPIRVSPSKTP 432
AE A+A LN G LG+ IR+S ++P
Sbjct: 316 ACAEQALAGLN--GTQLGAQSIRLSWGRSP 343
>gi|66800585|ref|XP_629218.1| hypothetical protein DDB_G0293252 [Dictyostelium discoideum AX4]
gi|60462622|gb|EAL60825.1| hypothetical protein DDB_G0293252 [Dictyostelium discoideum AX4]
Length = 691
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+ V+ +I+ + TEE++ LF G + +I PN + AFI F D +A NL
Sbjct: 177 KIVWAGNINPESTEEEVRHLFSQFGYLQAIKII--PNK--QCAFITFADVNCAIQAQFNL 232
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTED-----EREMCARTIYCTNIDKKVTQADV 371
GT+ P+++ K AP R + + E + ++ N++ V+ +
Sbjct: 233 NGTIFRGLPLKLGFGKVENAPQANFGGGRFDQYNKPHQEETPTKNLWLGNVNSNVSYELL 292
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
K F+ G V +R+L H AFV F ESA AA N +G ++ +P++++
Sbjct: 293 KQIFDQF-GNVDTIRIL----HGRGCAFVNFFTVESAAAARNGLNGTMVCGMPLKIN 344
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 25/177 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEAEGARAA 313
++YV D+ + VTE L +F G V+ R+C D SV R +A++ + + A+ RA
Sbjct: 17 SLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRD--SVTRKSLGYAYVNYHNLADAERAL 74
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L T + P R++ S R R+ I+ N+DK + D K
Sbjct: 75 DTLNYTNIKGQPARLMWSH------------RDPSLRKSGTGNIFVKNLDKTI---DNKA 119
Query: 374 FFE--SVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
F+ S+ G + ++ D + S FV + ESA A+ +G+ LGS + V
Sbjct: 120 LFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYV 176
>gi|332376136|gb|AEE63208.1| unknown [Dendroctonus ponderosae]
Length = 371
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 19/192 (9%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
+E +T+YV ++D V E+ L ALF G V C+I +P + +AF+EFT+ +
Sbjct: 3 DEAYPKTLYVGNLDISVQEDLLCALFSQIGPVKGCKIIREPGND-PYAFVEFTNHQSAST 61
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
A + + + ++V A +P N P+T+ I+ ++ ++ +
Sbjct: 62 ALIAMNKRVFLDKEMKV---NWATSPGN---QPKTDTSNH---HHIFVGDLSPEIETDTL 112
Query: 372 KLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRV 426
+ F GE+ R++ D S AFV FV AE+AI A+N G LGS IR
Sbjct: 113 REAFAPF-GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQAMN--GQWLGSRSIRT 169
Query: 427 SPS-KTPVRPRA 437
+ S + P PRA
Sbjct: 170 NWSTRKPPPPRA 181
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 162
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 163 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLL 207
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL 314
R V+V ++D+ + +QL +F G+V+ C++ D + V + + F++F + A
Sbjct: 30 RGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACN 89
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
GT++ + V P F+ R + ++ +Y N+ + T AD+K
Sbjct: 90 FHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLKRL 138
Query: 375 FESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPSK 430
F GE+ ++ D S R FV F AE+A+ A+ +GVV+ + V ++
Sbjct: 139 FGEF-GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 195
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 162
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 163 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLL 207
>gi|326524289|dbj|BAK00528.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 429
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 32/231 (13%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEIIRR-TVYVSDIDQQVTEEQLAALFVGCG-QVVDCRIC 289
K+ FGQ R+N + QRE+ ++V D+ +VT+ L A F D R+
Sbjct: 121 KQIFGQ-PIRVNWAYASGQREDTTDHFHIFVGDLSPEVTDSALFAFFSAYSPNCSDARVM 179
Query: 290 GDPNSVLR--FAFIEFTDEAEGARAALNLAGTMLGFYPVR--------------VLPSKT 333
D + + F+ F ++ + A +L G LG +R +
Sbjct: 180 WDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGNRQIRCNWATKGANSGEDQLASDSK 239
Query: 334 AIAPVNPTFLPRT-----ED--EREMCARTIYCTNIDKKVTQADVKLFFESV-CGEVYRL 385
+I VN F ED E RT+Y N+ +VTQ + FF ++ G + +
Sbjct: 240 SIVDVNNNFTENAKQKSNEDAPENNPLYRTVYVGNLAHEVTQDVLHRFFHALGAGAIEEV 299
Query: 386 RLLGDYHHSTRIAFVEFV-MAESAIAALNCSGVVLGSLPIRVSPSKTPVRP 435
R+ H FV++ AE+A+A +G +LG P++ S P P
Sbjct: 300 RV----QHGKGFGFVKYSNHAETALAIQTGNGRILGGKPVKCSWGNKPTPP 346
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
R+VYV +I QVTE L +F G V C++ S + F+++ + A A L L
Sbjct: 61 RSVYVGNIHVQVTEALLREVFQSAGSVDGCKLIRKEKS--SYGFVDYYERGSAALAILTL 118
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
G + P+RV + + + ED + I+ ++ +VT + + FF
Sbjct: 119 NGKQIFGQPIRVNWAYAS---------GQREDTTDHF--HIFVGDLSPEVTDSALFAFFS 167
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 425
+ R++ D S FV F + A +A+N +G LG+ IR
Sbjct: 168 AYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGNRQIR 219
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 164 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLL 208
>gi|18423684|ref|NP_568815.1| RNA-binding protein 45A [Arabidopsis thaliana]
gi|75334165|sp|Q9FPJ8.1|RB45A_ARATH RecName: Full=Polyadenylate-binding protein RBP45A;
Short=Poly(A)-binding protein RBP45A; AltName:
Full=RNA-binding protein 45A; Short=AtRBP45A
gi|11762114|gb|AAG40335.1|AF324983_1 AT5g54900 [Arabidopsis thaliana]
gi|119360145|gb|ABL66801.1| At5g54900 [Arabidopsis thaliana]
gi|332009171|gb|AED96554.1| RNA-binding protein 45A [Arabidopsis thaliana]
Length = 387
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ +VT+ L+ F V +VV R G + F+ F DE E R
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKG---YGFVRFADENEQMR 211
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIA-PVNPTFLPRTE----DEREMCARTIYCTNIDKKV 366
A + G P+R+ P+ A P+ P T+ + + TI+ +D V
Sbjct: 212 AMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANV 271
Query: 367 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALNCSGVVLGSLP 423
T ++K F GE+ +++ R FV++ AE A++ LN G LG
Sbjct: 272 TDDELKSIFGQF-GELLHVKI----PPGKRCGFVQYANKASAEHALSVLN--GTQLGGQS 324
Query: 424 IRVSPSKTP 432
IR+S ++P
Sbjct: 325 IRLSWGRSP 333
>gi|9758270|dbj|BAB08769.1| unnamed protein product [Arabidopsis thaliana]
Length = 390
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ +VT+ L+ F V +VV R G + F+ F DE E R
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKG---YGFVRFADENEQMR 211
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIA-PVNPTFLPRTE----DEREMCARTIYCTNIDKKV 366
A + G P+R+ P+ A P+ P T+ + + TI+ +D V
Sbjct: 212 AMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANV 271
Query: 367 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALNCSGVVLGSLP 423
T ++K F GE+ +++ R FV++ AE A++ LN G LG
Sbjct: 272 TDDELKSIFGQF-GELLHVKI----PPGKRCGFVQYANKASAEHALSVLN--GTQLGGQS 324
Query: 424 IRVSPSKTP 432
IR+S ++P
Sbjct: 325 IRLSWGRSP 333
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ Q VT+ QL +F G V + RIC D + L +A++ + + A+ RA
Sbjct: 9 SLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALDT 68
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ R++ S+ R R+ I+ N+DK V D K F
Sbjct: 69 LNNTLVKGKACRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSV---DHKALF 113
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAA-LNCSGVVLGSLPIRVSPSKT 431
+ S G + +++ D + ++ FV + +SA A + +G+++ + V P K+
Sbjct: 114 DTFSAFGNILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFKS 173
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 236 GQGKRRMNSRTSLAQREEIIRRTV--YVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN 293
G+ +++M L + E + V Y+ +ID + ++L + F G + ++ D
Sbjct: 259 GRAQKKMEREAELKHKFETKYQGVNLYIKNIDDSIDSDKLRSTFAAYGTITSAKVMRDDK 318
Query: 294 SVLR--FAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
S F F+ +T E ++A + G M+G P+ V
Sbjct: 319 STSSKGFGFVCYTTPDEASKAVAEMHGRMVGNKPLYV 355
>gi|358055852|dbj|GAA98197.1| hypothetical protein E5Q_04880 [Mixia osmundae IAM 14324]
Length = 545
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAAL 314
+ V+V + +T E L F CG++V R+ D F +++F D A GA+AAL
Sbjct: 288 KNVFVGGLSWGITNESLQEAFESCGEIVSARVVTDRETGKSRGFGYVDFVD-AAGAKAAL 346
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE--DEREMCARTIYCTNIDKKVTQADVK 372
+AGT L + V S P P+ + DE ++T++ N+ + TQ V
Sbjct: 347 EMAGTELDGRTINVDLSAPRPPRDGPGATPKKQFNDELSAPSQTVFVGNLSFESTQDAVW 406
Query: 373 LFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN 413
F S G V +R+ D A+VEF +SA A++
Sbjct: 407 ESF-SDFGGVNSVRVPTDMETGRPKGFAYVEFGDVDSAKKAVD 448
>gi|321474916|gb|EFX85880.1| hypothetical protein DAPPUDRAFT_20224 [Daphnia pulex]
Length = 346
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 13/185 (7%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
++V D+ ++ L F G++ DCR+ DP ++ + F+ F +++ A +
Sbjct: 88 IFVGDLSPEIETHTLRDAFAAFGEISDCRVVRDPQTLKSKGYGFVSFVKKSDAENAIAGM 147
Query: 317 AGTMLGFYPVRV-LPSKTAIAPVNPTFLPRTEDE----REMCARTIYCTNIDKKVTQADV 371
G LG +R ++ AP + P + +E T+YC N+ + T+ +
Sbjct: 148 NGQWLGTRAIRTNWATRKPPAPKDAGSKPMSYEEVFGQSSSTNCTVYCGNLAQGSTEEAL 207
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPSK 430
+ F G++ +R+ D + AF+ F ESA A+ + L ++ S K
Sbjct: 208 QKIFGPY-GQIQEIRVFKDKGY----AFIRFASKESATQAIVSVHNTDLNGQNVKCSWGK 262
Query: 431 TPVRP 435
P P
Sbjct: 263 EPGEP 267
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 24/187 (12%)
Query: 260 YVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE--AEGARAALNLA 317
YV ++D VTEE + LF G V C+I +P + F+EF + A A AA+N
Sbjct: 1 YVGNLDPSVTEELIMVLFGQIGTVKGCKIIHEPGHE-PYCFVEFAEHHSAAAALAAMNKR 59
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 377
M R + A +P N P+ + + I+ ++ ++ ++ F +
Sbjct: 60 NCM-----GREMKVNWATSPGN---APKQDTSKHF---HIFVGDLSPEIETHTLRDAFAA 108
Query: 378 VCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKTP 432
GE+ R++ D S FV FV AE+AIA +N G LG+ IR + +
Sbjct: 109 F-GEISDCRVVRDPQTLKSKGYGFVSFVKKSDAENAIAGMN--GQWLGTRAIRTNWATR- 164
Query: 433 VRPRAPR 439
+P AP+
Sbjct: 165 -KPPAPK 170
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 162
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 163 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLL 207
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 21/178 (11%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV D+D VTE L +F V RIC D + L +A++ + A+ RA
Sbjct: 10 VSASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 69
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T + P R++ + R R ++ N+DK + D K
Sbjct: 70 LDTLNFTCIRGRPCRIM------------WCLRDPASRRNNDGNVFVKNLDKSI---DNK 114
Query: 373 LFFE--SVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
F+ S+ G + ++ D S F+ F A+SA A++ +G VLG PI V
Sbjct: 115 TLFDTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYV 172
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 15/209 (7%)
Query: 227 AAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDC 286
+A+RRK+ F + +++ I R +YV +I + T E+LA +F CG V
Sbjct: 43 SALRRKRVFSTKAQVQVQEAVQGGKQKEIERRLYVGNIPRTSTNEELAKIFGECGNVEKA 102
Query: 287 RICGDPNS--VLRFAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ D + RFAF+ + E A+AA+ + GT +G RV+ P++ + L
Sbjct: 103 EVMYDKYTKRSRRFAFVTMST-VEDAQAAIEKMNGTEIGG---RVIKVNITEKPLDVSGL 158
Query: 344 PRTEDEREMC--ARTIYCTNIDKKVTQADVKLFFES----VCGEVYRLRLLGDYHHSTRI 397
R +E E +Y N+ K VT +K F + +V R+ G +
Sbjct: 159 NRLTEEAEFIDSPYKVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFV 218
Query: 398 AFVEFVMAESAIAALNCSGVVLGSLPIRV 426
+F E+AI+A N VVL P+RV
Sbjct: 219 SFSSEADVEAAISAFN--NVVLEGKPMRV 245
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 21/178 (11%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV D+D VTE L +F V RIC D + L +A++ + A+ RA
Sbjct: 10 VSASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 69
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T + P R++ + R R ++ N+DK + D K
Sbjct: 70 LDTLNFTCIRGRPCRIM------------WCLRDPASRRNNDGNVFVKNLDKSI---DNK 114
Query: 373 LFFE--SVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
F+ S+ G + ++ D S F+ F A+SA A++ +G VLG PI V
Sbjct: 115 TLFDTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYV 172
>gi|157105905|ref|XP_001649078.1| fuse-binding protein-interacting repressor siahbp1 [Aedes aegypti]
gi|108879987|gb|EAT44212.1| AAEL004415-PA [Aedes aegypti]
Length = 672
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 25/218 (11%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ ++++ S+ + QR++ + VYV I ++ E+ + A F+ G +
Sbjct: 156 VLMKQTLAHQQQQLASQRTQVQRQQALALMCRVYVGSISFELKEDTIRAAFLPFGPIKSI 215
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + EGA+ AL + G MLG ++V P+ +
Sbjct: 216 NMSWDPITQKHKGFAFVEY-EIPEGAQLALEQMNGAMLGGRNIKV---------GRPSNM 265
Query: 344 PRTE---DEREMCART---IYCTNIDKKVTQADVKLFFESVCGEVYRLRL-LGDYHHSTR 396
P+ + DE + A+ IY +I +T+ D+K FE+ G + ++ G H+ +
Sbjct: 266 PQAQQVIDEIQEEAKNYNRIYIASIHPDLTEEDIKSVFEAF-GPIVTCKMSQGSAAHTHK 324
Query: 397 -IAFVEFVMAESAIAALNCSGVV-LGSLPIRVSPSKTP 432
AF+E+ +SAI A+ + LG +RV S TP
Sbjct: 325 GYAFIEYQTNQSAIEAIASMNLFDLGGQLLRVGRSITP 362
>gi|331219745|ref|XP_003322549.1| hypothetical protein PGTG_04086 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 680
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 13/177 (7%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAAL 314
R T+YV++ + +E + + F G + D R S RF +I+FT A A AAL
Sbjct: 320 RSTLYVTNFPEDANDEWIRSKFSQFGSIFDVRWPSKRFKSTRRFCYIQFTSPA-SAEAAL 378
Query: 315 NLAGTMLGFYPVRVLPS-KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L + + V P K ++ +PT +T + + +Y T + K V + D++
Sbjct: 379 QL-------HNLEVSPKQKMSVLISDPT-RKQTRSDNHANEKELYITCLSKYVQEDDLRK 430
Query: 374 FFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429
F S GE+ +R++ D HS AFVEF SA AAL+ + V L I V+ S
Sbjct: 431 LF-SQFGEIKGVRVVLDQAGHSKGFAFVEFQNEMSAKAALSMNNVELKKRRIGVTIS 486
>gi|405961668|gb|EKC27433.1| Putative splicing factor, arginine/serine-rich 7 [Crassostrea
gigas]
Length = 449
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 63/236 (26%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC-------GDPNSVLRFAFIEFT 304
E+I + + +++I T++Q+ LF G++ +C++ GD ++ + ++++
Sbjct: 3 EKITTKVIQITNIAPNATKDQMKTLFGYLGRIDECKMYPSNELPEGDTST--KVCYVKYD 60
Query: 305 DEAEGARA-----------ALNLAGTMLGFYP-----VRVLPSKTA-IAPVNPTF----- 342
D A AL + M G P +++ PS A + P P++
Sbjct: 61 DSVSSGIALHLTNTVFIDRALIIVPVMDGKIPDETTALQIAPSAIAGMIPGTPSWPSNVI 120
Query: 343 -----------------------------LPRTED--EREMCARTIYCTNIDKKVTQADV 371
LP D + E RT+Y N+ K VT +
Sbjct: 121 SQMTGTGLTQMITTHDPKLTALGLLQYPPLPGNTDPAKIEEIRRTVYVGNLAKNVTTEQL 180
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427
FF V GEV +R+ GD T+ A+VEF S AL +GV+ +LPI V+
Sbjct: 181 LSFFSQV-GEVKYVRMAGDEKQPTKNAYVEFTDQRSISTALTYNGVMFQTLPISVT 235
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD 305
T A+ EEI RRTVYV ++ + VT EQL + F G+V R+ GD + A++EFTD
Sbjct: 154 TDPAKIEEI-RRTVYVGNLAKNVTTEQLLSFFSQVGEVKYVRMAGDEKQPTKNAYVEFTD 212
Query: 306 EAEGARAALNLAGTMLGFYPVRV 328
+ AL G M P+ V
Sbjct: 213 Q-RSISTALTYNGVMFQTLPISV 234
>gi|341038993|gb|EGS23985.1| RNA splicing factor (pad-1)-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 594
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 82/192 (42%), Gaps = 34/192 (17%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
+E RRTV+V + ++ +L F G V + +I D N ++EF E E
Sbjct: 225 DERDRRTVFVQQLAARLRTRELKEFFEKAGPVAEAQIVKDRVSNRSKGVGYVEFKSE-ES 283
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART------------- 356
AAL L G L P+ V P TE E+ ART
Sbjct: 284 VAAALQLTGQKLLGIPIIVQP---------------TEAEKNRQARTTSGHHPNSVPFHR 328
Query: 357 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NC 414
+Y NI +T+ D++ FE GE+ ++L D + +R FV+F A +A AL
Sbjct: 329 LYVGNIHFSITETDLQHVFEPF-GELEFVQLQKDENGRSRGYGFVQFRDAANAREALEKM 387
Query: 415 SGVVLGSLPIRV 426
+G L PIRV
Sbjct: 388 NGFDLAGRPIRV 399
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFV 403
T DER+ RT++ + ++ ++K FFE G V +++ D + S + +VEF
Sbjct: 223 TNDERDR--RTVFVQQLAARLRTRELKEFFEK-AGPVAEAQIVKDRVSNRSKGVGYVEFK 279
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSK 430
ES AAL +G L +PI V P++
Sbjct: 280 SEESVAAALQLTGQKLLGIPIIVQPTE 306
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 21/178 (11%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSV--LRFAFIEFTDEAEGARAAL 314
R++YV D++ V E QL LF VV R+C D + L +A++ F++ + A+A
Sbjct: 33 RSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAME 92
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
L T L P+R++ F R R ++ N+D K+ D K
Sbjct: 93 VLNFTPLNGKPIRIM------------FSHRDPTTRRSGHANVFIKNLDTKI---DNKAL 137
Query: 375 FESVC--GEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+E+ G V ++ D + S F++F E A +A+N +G+++ + V P
Sbjct: 138 YETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGP 195
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGA 310
E++ +Y+ ++ + EE+L LF G + C++ D + + + F+ F+ E +
Sbjct: 310 EKMKAANLYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEAS 369
Query: 311 RAALNLAGTMLGFYPVRV 328
RA + G M+G P+ V
Sbjct: 370 RALSEMNGKMIGKKPLYV 387
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 16/180 (8%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
VYV ++ + ++E L +F G + + D N R F F+ F A A L
Sbjct: 214 VYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLN 273
Query: 318 GTMLG---FYPVRVLPSKTAIAPVNPTFLPRTEDER-----EMCARTIYCTNIDKKVTQA 369
G +Y R A + F E ER +M A +Y N+ + +
Sbjct: 274 GMTFSDKVWYVGRAQRKGEREAELKAKF----EQERNSRYEKMKAANLYLKNLGDTIDEE 329
Query: 370 DVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
+K F S G + +++ D ++ FV F E A AL+ +G ++G P+ V+
Sbjct: 330 RLKELF-SEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVA 388
>gi|196010401|ref|XP_002115065.1| hypothetical protein TRIADDRAFT_28658 [Trichoplax adhaerens]
gi|190582448|gb|EDV22521.1| hypothetical protein TRIADDRAFT_28658 [Trichoplax adhaerens]
Length = 309
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 27/171 (15%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEG 309
E+I + + V+ + Q +T++++ +LF CG+V+ C++ D NS L +AF+++ D A+
Sbjct: 3 EKIDQSNLIVNYLPQSMTQDEIQSLFSSCGKVISCKLVRDKNSHHSLGYAFVKYEDVADA 62
Query: 310 ARAALNLAGTMLGFYPVRVL---PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV 366
+A +L G L ++V PS AI N +Y + +
Sbjct: 63 NKAISSLNGLRLQSKVIKVSYARPSSAAIKNAN-----------------LYVSGLPLHY 105
Query: 367 TQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVM---AESAIAALN 413
T D+ F G + ++L D + +R + FV + AE+AI ALN
Sbjct: 106 THQDLDNLFGQY-GAIITSKVLYDGNGVSRGVGFVRYDKRNEAEAAILALN 155
>gi|365192966|gb|AEW68341.1| putative nuclear acid binding protein [Medicago sativa]
Length = 409
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 29/201 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ V++ L +F V +VV R G + F+ F DE+E R
Sbjct: 166 TIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRNTGRSKG---YGFVRFADESEQMR 222
Query: 312 AALNLAGTMLGFYPVRVLP-------SKTAIAPV-NPTFLPRTEDEREMCARTIYCTNID 363
A + G + P+R+ P ++T+ A NP ++E + TI+ N+D
Sbjct: 223 AMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQ--GGAQNENDPNNTTIFVGNLD 280
Query: 364 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALNCSGVVLG 420
VT +K F + GE+ +++ R FV+F AE A+ LN G +LG
Sbjct: 281 PNVTDEHLKQVF-TQYGELVHVKI----PSGKRCGFVQFADRSSAEEALRVLN--GTLLG 333
Query: 421 SLPIRVSPSKTPVRPRAPRLP 441
+R+S ++P + + P
Sbjct: 334 GQNVRLSWGRSPANKQTQQDP 354
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 25/220 (11%)
Query: 215 NHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLA 274
+H A N NV+ + GQ R N + A + ++YV D+ Q VTE L
Sbjct: 45 DHTAGNANVSGGVSGTTTAPAGQ---RPNGGMN-AGAANFVSPSLYVGDLHQDVTEAMLF 100
Query: 275 ALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332
+F G V R+C D + L +A++ + + R+ L T++ P R++
Sbjct: 101 EVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTLNYTVIKGQPCRIM--- 157
Query: 333 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE--SVCGEVYRLRL-LG 389
+ R R+ I+ N+DK + D K ++ S+ G + ++ +
Sbjct: 158 ---------WCHRDPSLRKSGNGNIFVKNLDKNI---DNKALYDTFSLFGNILSCKVAVD 205
Query: 390 DYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
D HS FV + ESA +A++ +G+++G + V P
Sbjct: 206 DNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGP 245
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL F G VV R+C D + L + ++ FT+ + ARA
Sbjct: 37 SLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQE 96
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L L P+RV+ S R R A I+ N+D+ + + F
Sbjct: 97 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144
Query: 376 ESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
SV G + ++ D S FV++ ESA A+ +G++L + V P
Sbjct: 145 -SVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D +++E+L +F G V C++ DPN + + F+ F+ E A L+
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAMSQLS 379
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 380 GKMIESKPLYV 390
>gi|427798071|gb|JAA64487.1| Putative splicing factor arginine/serine-rich, partial
[Rhipicephalus pulchellus]
Length = 381
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
E IRRTVYV ++D T EQL F G+V R+ G + RFAF+EFT+++ RA
Sbjct: 71 EEIRRTVYVGNLDSSATTEQLLKFFSQMGEVKYVRMAGGESQPTRFAFVEFTEQSSVGRA 130
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
E RT+Y N+D T + FF S GEV +R+ G TR AFVEF S
Sbjct: 71 EEIRRTVYVGNLDSSATTEQLLKFF-SQMGEVKYVRMAGGESQPTRFAFVEFTEQSSVGR 129
Query: 411 ALNCSGV 417
AL +G+
Sbjct: 130 ALQFNGI 136
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 162
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 163 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 207
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 160
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 205
>gi|242021493|ref|XP_002431179.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
gi|212516428|gb|EEB18441.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
Length = 403
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 19/198 (9%)
Query: 248 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEA 307
++ EE +T+YV ++D VTE+ L LF G V C+I +PN+ +AF+EF +
Sbjct: 1 MSNSEENYPKTLYVGNLDVSVTEDLLCTLFSQIGSVKGCKIIREPNND-PYAFVEFVNHQ 59
Query: 308 EGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367
+ A + + + ++V A +P N P+ + I+ ++ ++
Sbjct: 60 AASTALIAMNKRHVLEKEIKV---NWATSPGN---QPKQDTSSH---HHIFVGDLSPEIE 110
Query: 368 QADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSL 422
++ F GE+ R++ D S AFV FV AESAI A+N G LG+
Sbjct: 111 MHTLREAFAPF-GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAESAIHAMN--GQWLGNR 167
Query: 423 PIRVSPS-KTPVRPRAPR 439
IR + S + P PR R
Sbjct: 168 SIRTNWSTRKPPPPRTER 185
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGA 310
+ + +VYV D++ V+E QL +F G VV R+C D L +A++ + +
Sbjct: 20 QFVSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDAT 79
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA +L F PV P + + +P+ R+ A I+ N+DK +
Sbjct: 80 RAL-----ELLNFTPVNGKPIRIMFSHRDPSL-------RKSGAANIFIKNLDKAIDNKA 127
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
+ F S G + ++ D ++ FV+F ESA +A+ +G++L + V P
Sbjct: 128 LHDTF-SAFGGILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGP 186
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 18/104 (17%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D V +E+L LF G + C++ DP R + F+ F+ E RA +
Sbjct: 308 LYLKNLDDAVDDEKLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRAVTEMN 367
Query: 318 GTMLGFYPVRVLPS-----------------KTAIAPVNPTFLP 344
M+G P+ V + +T + P PT LP
Sbjct: 368 TKMVGSKPLYVALAQRKEERRVRLQAAFAQMRTPVGPTVPTSLP 411
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 162
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 163 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 207
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL 314
R V+V ++D+ + +QL +F G+V+ C++ D + V + + F++F + A
Sbjct: 101 RGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACN 160
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
GT++ + V P F+ R + ++ +Y N+ + T AD+K
Sbjct: 161 FHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLKRL 209
Query: 375 FESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPSK 430
F GE+ ++ D S R FV F AE+A+ A+ +GVV+ + V ++
Sbjct: 210 FGEF-GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 266
>gi|393212445|gb|EJC97945.1| hypothetical protein FOMMEDRAFT_97432 [Fomitiporia mediterranea
MF3/22]
Length = 1017
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 29/196 (14%)
Query: 233 KSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP 292
+S G K +M S L + E TV+V+D+ TE+ L ALF CG + + +I
Sbjct: 585 RSDGNKKAKMGSTPPLKRDRE--NSTVFVADLPSGATEDDLTALFKDCGDIREIKITSLA 642
Query: 293 NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREM 352
NS R A IEF D E A L + + V
Sbjct: 643 NS--RVATIEFVDR-ESVPAGLTKDKKRINGQEISV---------------------HLA 678
Query: 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHST-RIAFVEFVMAESAIAA 411
T+Y TN +KV A ++ F+ G ++ +R +T R +V+F E+A AA
Sbjct: 679 WQSTLYVTNFPEKVDDAYIRQLFDQF-GVIFDVRWPSKKFKATRRFCYVQFTSKEAAQAA 737
Query: 412 LNCSGVVLG-SLPIRV 426
L+ G L LP+ V
Sbjct: 738 LSLHGTELEPGLPMNV 753
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALNL 316
T+YV++ ++V + + LF G + D R + RF +++FT + E A+AAL+L
Sbjct: 682 TLYVTNFPEKVDDAYIRQLFDQFGVIFDVRWPSKKFKATRRFCYVQFTSK-EAAQAALSL 740
Query: 317 AGTML--GFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVK 372
GT L G P+ V S NP R ++ + A R +Y + K V + D+K
Sbjct: 741 HGTELEPGL-PMNVFIS-------NPE---RKKERTDAGADDREVYVAGLSKFVIRDDLK 789
Query: 373 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
F++ G V +R+ D + +AFVEF SA AL + + + I V+ S +
Sbjct: 790 KLFKTF-GPVKDIRVTKDDTGLCKGVAFVEFEDEPSAQRALQANNHDVKNRRIAVTMSDS 848
Query: 432 PVRPR 436
VR R
Sbjct: 849 RVRAR 853
>gi|403162308|ref|XP_003890369.1| hypothetical protein PGTG_21014 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172551|gb|EHS64663.1| hypothetical protein PGTG_21014 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1087
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 13/177 (7%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAAL 314
R T+YV++ + +E + + F G + D R S RF +I+FT A A AAL
Sbjct: 732 RSTLYVTNFPEDANDEWIRSKFSQFGSIFDVRWPSKRFKSTRRFCYIQFTSPA-SAEAAL 790
Query: 315 NLAGTMLGFYPVRVLPS-KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L + + V P K ++ +PT +T + + +Y T + K V + D++
Sbjct: 791 QL-------HNLEVSPKQKMSVLISDPT-RKQTRSDNHANEKELYITCLSKYVQEDDLRK 842
Query: 374 FFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429
F S GE+ +R++ D HS AFVEF SA AAL+ + V L I V+ S
Sbjct: 843 LF-SQFGEIKGVRVVLDQAGHSKGFAFVEFQNEMSAKAALSMNNVELKKRRIGVTIS 898
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN 315
++YV D++Q V EEQL LF QVV R+C D S L + ++ F++ + A A
Sbjct: 46 SLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKA 105
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T L P+R++ F R R+ ++ N+D + D KL
Sbjct: 106 LNFTPLNGKPIRIM------------FSHRDPSIRKSGYGNVFIKNLDSTL---DNKLLH 150
Query: 376 ESVC--GEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN 413
E+ G V ++ D + S FV+F ESA A++
Sbjct: 151 ETFAAFGTVLSCKVAVDSNGQSKGYGFVQFENEESAERAIS 191
>gi|167517070|ref|XP_001742876.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779500|gb|EDQ93114.1| predicted protein [Monosiga brevicollis MX1]
Length = 1825
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 29/197 (14%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEA 307
A + E RTV+V ++D VTE++L A F CG++VD R+ + + +A++EF A
Sbjct: 642 AHKVEAEDRTVFVKNLDFSVTEDELRARFADCGEIVDVRMPFNHKGKAKGYAYLEFA-SA 700
Query: 308 EGARAALNLAGTMLGFYPVRV--------LPSKTAIAPVNPTFLP--RTEDEREMCARTI 357
AL+ ++G P+ V +PS LP T D+ +++
Sbjct: 701 SAVNPALSKDRQIMGTRPMLVDRYVDRSQMPS-----------LPFKHTTDKN---PKSL 746
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVM-AESAIAALNCS 415
+ N+D K ++A++K F G V +RL+ + S R +V+FV A++A A
Sbjct: 747 FVKNLDYKASEAEIKDLFNK-HGAVEAVRLVTKFDGSRRDFCYVDFVTEADAAKAQAALD 805
Query: 416 GVVLGSLPIRVSPSKTP 432
G +L +RV+ SK P
Sbjct: 806 GHMLHGRALRVNISKPP 822
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 336 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHST 395
APV P + E E RT++ N+D VT+ +++ F CGE+ +R+ ++
Sbjct: 635 APVAPRQAHKVEAED----RTVFVKNLDFSVTEDELRARFAD-CGEIVDVRMPFNHKGKA 689
Query: 396 R-IAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLP 441
+ A++EF A + AL+ ++G+ P+ V + R + P LP
Sbjct: 690 KGYAYLEFASASAVNPALSKDRQIMGTRPMLV--DRYVDRSQMPSLP 734
>gi|427789733|gb|JAA60318.1| Putative rox8 [Rhipicephalus pulchellus]
Length = 406
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 18/175 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
RT+YV ++D VTEE L A+F GQV C+I +P + + F+EF+D A A L +
Sbjct: 13 RTLYVGNLDTAVTEELLVAVFGQMGQVKGCKIIHEPGND-PYCFVEFSDHQSAASALLAM 71
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+ ++V A +P N P+ + + I+ ++ ++ ++ F
Sbjct: 72 NKRLCFGKEMKV---NWATSPGN---TPKLDTSKH---HHIFVGDLSPEIETTQLRDAFA 122
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRV 426
G++ R++ D S FV FV AE+AI +N G LGS IR
Sbjct: 123 PF-GDISDCRVVRDPQTLKSKGYGFVSFVKKADAENAIGTMN--GQWLGSRAIRT 174
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 110 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 157
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 158 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 202
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 121 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 180
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A +
Sbjct: 181 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 232
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
Y NID+ VT+ + + FE GE+ L D +R FV F ESA AA++
Sbjct: 233 YIKNIDQDVTEEEFRELFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 115 LNYTLIKGRPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDTAIDNKALHDTF 162
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 163 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLL 207
>gi|296475869|tpg|DAA17984.1| TPA: splicing factor, arginine/serine-rich 12-like [Bos taurus]
Length = 325
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 132 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 190
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 191 LAFNGVMFGDRPLKINHSNNAI 212
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 134 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 193
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 194 NGVMFGDRPLKI 205
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 46 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 105
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 106 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDNAIDNKALHDTF 153
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 154 -AAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLL 198
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + + +
Sbjct: 117 RIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYG 176
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A I
Sbjct: 177 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNI 228
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
Y NID ++T + + FE+ GE+ L D +R FV + ESA AA+
Sbjct: 229 YIKNIDLEITDDEFRTMFEAF-GEITSATLSHDQDGKSRGFGFVNYANHESAEAAV 283
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 164 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLL 208
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 17/178 (9%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV D++ VT+ L LF GQVV R+C D + L + ++ ++ + ARA
Sbjct: 22 VTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARA 81
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T L P+R++ S R R+ + I+ N+DK + +
Sbjct: 82 LDMLNFTPLNGSPIRIMYSH------------RDPSVRKSGSGNIFIKNLDKGIDHKALH 129
Query: 373 LFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F S G + ++ D S FV+F ESA A+ +G++L + V P
Sbjct: 130 DTF-SAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGP 186
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D + +++L LF G + C++ DPN + R + F+ F+ E ++A + +
Sbjct: 308 LYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASKALMEMN 367
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 368 GKMVVSKPLYV 378
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 110 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 157
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 158 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 202
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 121 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 180
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A +
Sbjct: 181 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 232
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
Y NID+ VT+ + + FE GE+ L D +R FV F ESA AA++
Sbjct: 233 YIKNIDQDVTEEEFRELFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
>gi|356555656|ref|XP_003546146.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 411
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 27/192 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ VT+ L F V +VV R+ G + F+ F++E+E R
Sbjct: 162 TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTG---RTKGYGFVRFSEESEQMR 218
Query: 312 AALNLAGTMLGFYPVRVLPS--KTAIAPVNP--TFL---PR-TEDEREMCARTIYCTNID 363
A + G + P+R+ P+ KT P ++L P+ +++E + TI+ N+D
Sbjct: 219 AMTEMQGVLCSTRPMRIGPASNKTPATQSQPKASYLNSQPQGSQNENDPNNTTIFVGNLD 278
Query: 364 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALNCSGVVLG 420
VT ++ F S GE+ +++ R FV+F AE A+ LN G +LG
Sbjct: 279 PNVTDDHLRQVF-SQYGELVHVKIPA----GKRCGFVQFADRSCAEEALRVLN--GTLLG 331
Query: 421 SLPIRVSPSKTP 432
+R+S ++P
Sbjct: 332 GQNVRLSWGRSP 343
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 164 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLL 208
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 164 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLL 208
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 46 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 105
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 106 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDNAIDNKALHDTF 153
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 154 -AAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLL 198
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + + +
Sbjct: 117 RIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYG 176
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A I
Sbjct: 177 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNI 228
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
Y NID ++T + ++ FE+ GE+ L D +R FV + ESA AA+
Sbjct: 229 YIKNIDLEITDDEFRVMFEAF-GEITSATLSHDQDGKSRGFGFVNYANHESAEAAV 283
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 20/174 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D S L +A++ F ++ R
Sbjct: 3 SLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLET 62
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N++K + D + F
Sbjct: 63 MNLDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFVKNLEKSI---DNRALF 107
Query: 376 ESVC--GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
++ G + +++ D + S FV F ESA A+ +G+VL SL + V
Sbjct: 108 DAFSGFGNILSCKVVSDENGSKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFV 161
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ ++V ++++ + L F G G ++ C++ D N + F
Sbjct: 74 RIMWSQRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNILSCKVVSDENGSKGYGF 133
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ AR
Sbjct: 134 VHFETQESAEKAIEKMNGIVLKSLKVFV-----------GHFKSRKERELELGARAREFT 182
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + A + F G ++++ D ++ FV + E A A++
Sbjct: 183 NVYIKNFGEDMDNARLGEIF-GRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVD 240
>gi|297799290|ref|XP_002867529.1| hypothetical protein ARALYDRAFT_913848 [Arabidopsis lyrata subsp.
lyrata]
gi|297313365|gb|EFH43788.1| hypothetical protein ARALYDRAFT_913848 [Arabidopsis lyrata subsp.
lyrata]
Length = 418
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 32/211 (15%)
Query: 235 FGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRI 288
G G+RR + E TV+V D+ VT+ L F V +VV R
Sbjct: 161 LGAGERR---------QAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVTDRT 211
Query: 289 CGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKT----AIAPVNPTFLP 344
G + F+ F DE+E RA + G P+R P+ + P +
Sbjct: 212 TGRSKG---YGFVRFGDESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQ 268
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF-- 402
+ E + TI+ +D+ V + D+K F GE+ +++ R FV++
Sbjct: 269 GNQGESDPTNTTIFVGALDQSVIEDDLKSVFGQF-GELVHVKI----PAGKRCGFVQYAN 323
Query: 403 -VMAESAIAALNCSGVVLGSLPIRVSPSKTP 432
AE A++ LN G LG IR+S ++P
Sbjct: 324 RACAEQALSLLN--GTQLGGQSIRLSWGRSP 352
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 112 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 159
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 160 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 204
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 123 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 182
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A I
Sbjct: 183 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFDEMKANFTNI 234
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
Y NID VT+ + + FE GE+ L D +R FV + ESA AA++
Sbjct: 235 YIKNIDPDVTEEEFRKIFEQF-GEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVD 290
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 109 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 156
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 157 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 201
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 179
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A +
Sbjct: 180 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 231
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
Y N+D+++++ + + FE GE+ L D +R FV + +SA AA++
Sbjct: 232 YIKNLDQEISEEEFRQMFEKF-GEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + +G RA
Sbjct: 57 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 116
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 117 LNYTLIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDGAIDNKALHDTF 164
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D H +++ FV + AE+A +A+ + +G++L
Sbjct: 165 -AAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLL 209
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 25/180 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + + +
Sbjct: 128 RIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYG 187
Query: 300 FIEFTDEAEGARAAL-NLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRTEDEREMCAR 355
F+ + + AE A +A+ ++ G +L V V +P K R EM A
Sbjct: 188 FVHY-ETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKD-----------RMSKFEEMKAN 235
Query: 356 --TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
IY NID + T + + FE G++ L D +R FV ++ E A A+
Sbjct: 236 FTNIYVKNIDPEATDDEFRALFEKY-GDITSASLAHDQEGKSRGFGFVNYIRHEDANKAV 294
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 25/180 (13%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV D+D VTE L +F V RIC D + L +A++ + A+ RA
Sbjct: 10 VSASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 69
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T + P R++ + R R ++ N+DK + D K
Sbjct: 70 LDTLNFTCIRSRPCRIM------------WCLRDPASRRNNEGNVFVKNLDKSI---DNK 114
Query: 373 LFFE--SVCGEVYRLRLLGDYH-HSTRIAFVEFVMAES---AIAALNCSGVVLGSLPIRV 426
F+ S+ G + ++ D +S F+ F ES AIA LN G++LG PI V
Sbjct: 115 TLFDTFSLFGNIMSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLN--GMILGDRPIYV 172
>gi|118785284|ref|XP_314526.3| AGAP010553-PA [Anopheles gambiae str. PEST]
gi|116128011|gb|EAA09944.4| AGAP010553-PA [Anopheles gambiae str. PEST]
Length = 643
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 108/218 (49%), Gaps = 25/218 (11%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ ++++ S+ + QR++ + VYV I ++ E+ + A F+ G +
Sbjct: 130 VLMKQTLAHQQQQLASQRTQVQRQQALALMCRVYVGSISFELKEDTIRAAFLPFGPIKSI 189
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + EGA+ AL + G MLG ++V P+ +
Sbjct: 190 NMSWDPITQKHKGFAFVEY-EIPEGAQLALEQMNGAMLGGRNIKV---------GRPSNM 239
Query: 344 PRTE---DEREMCART---IYCTNIDKKVTQADVKLFFESVCGEVYRLRL-LGDYHHSTR 396
P+ + DE + A++ IY +I +T+ D+K FE+ G + ++ G+ H+ +
Sbjct: 240 PQAQQVIDEIQEEAKSYNRIYIASIHPDLTEEDIKSVFEAF-GPIMTCKMSQGNAVHTHK 298
Query: 397 -IAFVEFVMAESAIAALNCSGVV-LGSLPIRVSPSKTP 432
F+E+ +SAI A+ + LG +RV S TP
Sbjct: 299 GYGFIEYQTNQSAIEAIASMNLFDLGGQLLRVGRSITP 336
>gi|413916837|gb|AFW56769.1| hypothetical protein ZEAMMB73_720605 [Zea mays]
Length = 318
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 11/56 (19%)
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL-----------LGDYHHSTR 396
+ TIY TNIDKKVT+AD+KLFFES+CGEV R L L +HH R
Sbjct: 251 LSGGTIYRTNIDKKVTEADLKLFFESICGEVGRSLLQTQSPFCIAKSLQKWHHQDR 306
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 205
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A +
Sbjct: 184 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 235
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
Y NID++VT + + FE GE+ L D +R FV F +SA AA++
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
>gi|336389833|gb|EGO30976.1| hypothetical protein SERLADRAFT_455426 [Serpula lacrymans var.
lacrymans S7.9]
Length = 439
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 36/214 (16%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
V+V D+ +V +E L F G + D R+ D NS + F+ F D+ + +A +
Sbjct: 110 VFVGDLSPEVNDEILGKAFSAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 169
Query: 317 AGTMLGFYPVRV-----------------LPSKT--AIAPVNPTFLPRTED----EREMC 353
G LG +RV P T A AP+N P + D +
Sbjct: 170 NGEWLGSRAIRVNWANQKTQGSVAVASPPRPGATGGAPAPINFQGGPLSYDSVVQQTPSY 229
Query: 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAE-SAIAAL 412
T+Y N+ TQAD+ F+S+ G + +R+ D AFV+ E +A+A +
Sbjct: 230 NSTVYVGNLVPYCTQADLIPLFQSI-GYLSEIRMQAD----RGFAFVKLDTHEHAAMAIV 284
Query: 413 NCSGVVLGSLPIRVSPSK-----TPVRPRAPRLP 441
G ++ PI+ S K T +P P P
Sbjct: 285 QLQGQMVHGRPIKCSWGKDRADGTTAQPGGPLSP 318
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 22/194 (11%)
Query: 242 MNSRTSLAQREEIIRRT-VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---SVLR 297
MNS + E RR +YV ++ +VTE L +F G V +I D N L
Sbjct: 1 MNSMGGMGGPAEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLN 60
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTI 357
+ F+E+ D A L G + +R VN + + E +
Sbjct: 61 YGFVEYMDMRAAETALQTLNGRKIFDTEIR----------VNWAYQGQQNKEDTTGHYHV 110
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-----IAFVEFVMAESAIAAL 412
+ ++ +V + F S G + R++ D + +AF + AE AIA +
Sbjct: 111 FVGDLSPEVNDEILGKAF-SAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 169
Query: 413 NCSGVVLGSLPIRV 426
N G LGS IRV
Sbjct: 170 N--GEWLGSRAIRV 181
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 25/197 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R QR+ R+T ++V ++D ++ L ++F G ++ C++ G+ F F
Sbjct: 89 RIMWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKVAGENGRSKGFGF 148
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVL-----PSKTAIAPVNPTFLPRTEDEREMCAR 355
++F + A L TMLG + V +TA AP
Sbjct: 149 VQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTAAAPCE-------------VFT 195
Query: 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALNC 414
+Y N+D+ +T+ +K F SV G+V + ++ D+ S FV F + A A++
Sbjct: 196 NLYVKNLDETITEDGLKDMF-SVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDV 254
Query: 415 -SGVVLGSLPIRVSPSK 430
+G V+GS + V ++
Sbjct: 255 MNGSVIGSKTLFVGKAQ 271
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Query: 251 REEIIRR--TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDE 306
++++++R ++YV D+D +VTE L A F G + R+C L +A++
Sbjct: 9 KQQVLQRGASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSH 68
Query: 307 AEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV 366
A+ +RA L T L P+R++ + R R+ ++ N+D +
Sbjct: 69 AQASRALGLLNHTNLKGKPMRIM------------WCQRDPFARKTGFANLFVKNLDFSI 116
Query: 367 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
+ + ++ F S G + ++ G+ S FV+F +SA+ A
Sbjct: 117 SSSCLESIF-SKYGTILSCKVAGENGRSKGFGFVQFESQDSALVA 160
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 205
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A +
Sbjct: 184 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 235
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
Y NID++VT + + FE GE+ L D +R FV F +SA AA++
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
>gi|403416100|emb|CCM02800.1| predicted protein [Fibroporia radiculosa]
Length = 433
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 31/206 (15%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
V+V D+ +V +E L F G + D R+ D NS + F+ F D+ + +A +
Sbjct: 109 VFVGDLSPEVNDEVLGKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 168
Query: 317 AGTMLGFYPVRV---------LPSKT----------AIAPVN----PTFLPRTEDEREMC 353
G LG +RV PS T A AP+N P +
Sbjct: 169 NGEWLGSRAIRVNWANQKTQGGPSPTMPGRPSGMGGAPAPINFQGGPLSYESVVQQTPAY 228
Query: 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAE-SAIAAL 412
T+Y N+ TQAD+ F+S+ G + +R+ D AFV+ E +A+A +
Sbjct: 229 NTTVYVGNLVPYCTQADLIPLFQSI-GYLSEIRMQAD----RGFAFVKLDTHEHAAMAIV 283
Query: 413 NCSGVVLGSLPIRVSPSKTPVRPRAP 438
G ++ PI+ S K AP
Sbjct: 284 QLQGQMVHGRPIKCSWGKDRADGTAP 309
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL LF GQVV R+C D S L + ++ + + + ARA
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T L P+R++ S +PT R I+ N+DK + + F
Sbjct: 88 LNFTPLHGKPIRIMYSNR-----DPTI-------RRSGNGNIFIKNLDKAIDHKALHDTF 135
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
S G + ++ D ++ FV++ E+A A+ +G++L + V P
Sbjct: 136 -SAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGP 189
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D +++E+L LF G + C++ DP+ V + + F+ F++ E +RA +
Sbjct: 311 LYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMN 370
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 371 GKMVVSKPLYV 381
>gi|406606068|emb|CCH42541.1| Polyadenylate-binding protein 1 [Wickerhamomyces ciferrii]
Length = 787
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALN 315
T+YV D+DQ+VTE+ L++LF + ++C P + L + ++ F+ + + RA +
Sbjct: 136 TLYVGDLDQKVTEKSLSSLFTKYESFLSAKLCYSPTTRLSLGYGYVNFSSDTDANRATED 195
Query: 316 LAGTMLGFYPVRVLP 330
L T++ +R++P
Sbjct: 196 LNYTLVANKEIRIMP 210
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 51 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 110
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 111 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 158
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 159 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 203
>gi|156363387|ref|XP_001626026.1| predicted protein [Nematostella vectensis]
gi|156212886|gb|EDO33926.1| predicted protein [Nematostella vectensis]
Length = 468
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEG 309
EE +RTV+ + + + L F GQV D RI D NS A+IEFTD++
Sbjct: 114 EEKDQRTVFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKS-A 172
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
A+ L+G L P+ V+ ++ A N ++ + +Y ++ +T+A
Sbjct: 173 VPLAIGLSGQKLLGAPIMVMLTQ---AEKNRLAAEAERLKQPLGPTRLYVGSLHFNITEA 229
Query: 370 DVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
VK FE G V ++L+ D + S FV+F AE+A A+ +G L P+++
Sbjct: 230 MVKAVFEPF-GTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 288
Query: 427 SP 428
P
Sbjct: 289 GP 290
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 344 PRTEDE-REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFV 400
P TE+ E RT++C + + + D++ FF V G+V +R++ D + S IA++
Sbjct: 107 PMTEESAEEKDQRTVFCMQLARNIRPRDLEEFFSKV-GQVSDVRIISDRNSRRSKGIAYI 165
Query: 401 EFVMAESAIAALNCSGVVLGSLPIRV 426
EF + A+ SG L PI V
Sbjct: 166 EFTDKSAVPLAIGLSGQKLLGAPIMV 191
>gi|291231285|ref|XP_002735593.1| PREDICTED: TIA-1 related protein-like [Saccoglossus kowalevskii]
Length = 409
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
++ + RT+YV ++D+QVTE + LF G C++ + + F+EF + + A
Sbjct: 9 DDALPRTLYVGNLDRQVTEAFILQLFGQIGPCKSCKMIAEHGGNDPYCFVEFVEHSHAAA 68
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
A + G M+ V+ VN P + + ++ ++ +V D+
Sbjct: 69 ALQTMNGRMILGKEVK----------VNWATTPSSMKKDTSNHHHVFVGDLSSEVDTPDL 118
Query: 372 KLFFESVCGEVYRLRLLGDYH--HSTRIAFVEF---VMAESAIAALNCSGVVLGSLPIRV 426
K F G++ R++ D S FV F V AE+AI +N G L IR
Sbjct: 119 KAAFAPF-GQISDARVVKDLQTNKSKGYGFVSFLNKVDAENAIQGMN--GQWLSGRAIRT 175
Query: 427 S-PSKTPVRPRAPR 439
+ ++ P PR P
Sbjct: 176 NWATRKPPPPRQPE 189
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R++ V++ ++D+ + + + F G ++ C++ D N + +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--- 356
F+ F E ++ + G +L V V F+PR E E+E+ +
Sbjct: 143 FVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELGEKAKLF 191
Query: 357 --IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG-DYHHSTRIAFVEF---VMAESAIA 410
+Y N + +T+ ++ FE G++ +++ D S FV F AE+A+
Sbjct: 192 TNVYVKNFGEDLTEEQLRTMFEKY-GKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVE 250
Query: 411 ALNCSGVVLG 420
ALN ++ G
Sbjct: 251 ALNGKEIIDG 260
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 20/156 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+D+ + D K +
Sbjct: 72 MNFDLIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDRSI---DNKAMY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESA 408
+ S G + ++ D + +++ FV F E+A
Sbjct: 117 DTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAA 152
>gi|391329197|ref|XP_003739062.1| PREDICTED: probable splicing factor, arginine/serine-rich 7-like
[Metaseiulus occidentalis]
Length = 399
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
E IRRT+YV ++D +T E + F CG++ R+ G+ + ++ AF+EFT++A
Sbjct: 164 EEIRRTIYVGNLDPNLTNEIVMKFFSQCGEIKYVRMGGETGASMKHAFVEFTEQASVGN- 222
Query: 313 ALNLAGTMLG 322
A GT+LG
Sbjct: 223 AFQFNGTLLG 232
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 336 APVNPTFLPRTEDER-EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHS 394
AP P DE E RTIY N+D +T V FF S CGE+ +R+ G+ S
Sbjct: 148 APNYPALPAGLSDENVEEIRRTIYVGNLDPNLTNEIVMKFF-SQCGEIKYVRMGGETGAS 206
Query: 395 TRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429
+ AFVEF S A +G +LGS + VS S
Sbjct: 207 MKHAFVEFTEQASVGNAFQFNGTLLGSRAMVVSHS 241
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVL----RFAFIEFTDEAEGARA 312
R + VS+I V+ EQL ALF G V DCR+ L R +I+F E
Sbjct: 8 RVIQVSNIASGVSREQLLALFNHVGSVEDCRLYPSVEQPLENGTRICYIKFK-ELWSVGV 66
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAP 337
A++L+ T+ P+ + P + P
Sbjct: 67 AMHLSNTIFMERPLLIFPMDSDQVP 91
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 25/179 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEAEGARAA 313
++YV D+ VTE L +F G G V R+C D SV R +A++ F + A+ RA
Sbjct: 35 SLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRD--SVTRRSLGYAYVNFHNVADAERAL 92
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L + P+R + + +PT R+ ++ N+DK + D K
Sbjct: 93 -----DTLNYSPIRGKQCRIMWSHRDPTL-------RKAGNANVFVKNLDKTI---DNKA 137
Query: 374 FFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
++ S+ G + ++ D +R FV F ESA A+ +G+++G + V P
Sbjct: 138 LYDTFSLFGNILSCKVATDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGP 196
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 51 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 110
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 111 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 158
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 159 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 203
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL LF GQVV R+C D S L + ++ + + + ARA
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T L P+R++ S +PT R I+ N+DK + + F
Sbjct: 88 LNFTPLHGKPIRIMYSNR-----DPTI-------RRSGNGNIFIKNLDKAIDHKALHDTF 135
Query: 376 ESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
S G + ++ D S FV++ E+A A+ +G++L + V P
Sbjct: 136 -SAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGP 189
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D +++++L LF G + C++ DP+ V + + F+ F+ E +RA +
Sbjct: 311 LYLKNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMN 370
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 371 GKMVVSKPLYV 381
>gi|357121988|ref|XP_003562698.1| PREDICTED: nucleolysin TIAR-like [Brachypodium distachyon]
Length = 427
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 38/226 (16%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEIIRR-TVYVSDIDQQVTEEQLAALFVG-CGQVVDCRIC 289
++ FGQ R+N + QRE+ ++V D+ +VT+ L A F G D R+
Sbjct: 122 RQIFGQ-PIRVNWAYASGQREDTTDHFNIFVGDLSAEVTDSALFAFFSGYSSSCSDARVM 180
Query: 290 GDPNSVLR--FAFIEFTDEAEGARAALNLAGTMLGFYPVRV-LPSKTA------------ 334
D + + F+ F ++ + A +L G LG +R +K A
Sbjct: 181 WDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGNRQIRCNWATKGANSVEDQQTSDSK 240
Query: 335 -IAPVNPTFLPRTEDEREMC----------ARTIYCTNIDKKVTQADVKLFFESV-CGEV 382
IA V F TED +E RT+Y N+ + TQ + FF ++ G +
Sbjct: 241 SIAGVTNNF---TEDGKEKANEDAPENNPLYRTVYVGNLAHEATQDVLHRFFYALGAGAI 297
Query: 383 YRLRLLGDYHHSTRIAFVEFV-MAESAIAALNCSGVVLGSLPIRVS 427
+R+ H FV++ AE+A+A +G +LG PI+ S
Sbjct: 298 EEVRV----QHGKGFGFVKYSSHAEAALAIQMGNGCILGGKPIKCS 339
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
R+VYV +I VTE L +F G V C++ S + F+++ + A A L L
Sbjct: 62 RSVYVGNIHVHVTEAVLREVFQSTGSVEGCKLIRKEKS--SYGFVDYYERGSAALAILQL 119
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
G + P+RV + + + ED + I+ ++ +VT + + FF
Sbjct: 120 NGRQIFGQPIRVNWAYAS---------GQREDTTDHF--NIFVGDLSAEVTDSALFAFFS 168
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 425
R++ D S FV F + A +A+N +G LG+ IR
Sbjct: 169 GYSSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGNRQIR 220
>gi|148686564|gb|EDL18511.1| splicing factor, arginine/serine-rich 12, isoform CRA_b [Mus
musculus]
Length = 223
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVT-EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 92 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 150
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 151 LAFNGVMFGDRPLKINHSNNAI 172
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 94 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 153
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 154 NGVMFGDRPLKI 165
>gi|357631741|gb|EHJ79210.1| sex-lethal [Danaus plexippus]
Length = 333
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Query: 261 VSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALNLAG 318
V+ + Q +TE+ L A+F+ G + CR+ D F F+ FT E + ARA G
Sbjct: 65 VNYLPQTMTEKDLYAMFMSIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAARAIETFNG 124
Query: 319 TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESV 378
Y +R K + A P ED +E +Y TN+ + +T+ ++ F
Sbjct: 125 -----YQLRNKRLKVSYA------RPSGEDIKET---NLYVTNLPRAITEDQLETIFGKY 170
Query: 379 CGEVYRLRLLGDYHHST--RIAFVEFVM---AESAIAALNCSGVVLGSLPIRV 426
G + + +L D + T +AFV F A+ AIAALN GS P+ V
Sbjct: 171 -GRIVQKHILRDKSNGTPRGVAFVRFDKREEAQEAIAALNNVIPEGGSEPLCV 222
>gi|393246659|gb|EJD54168.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 531
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 9/170 (5%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
EE+ ++++V + V +E L F G+VV R+ D F ++EF D A
Sbjct: 269 EEV--KSIFVGRLSWNVDDEWLKTEFAEAGEVVSARVQMDRQTGKSKGFGYVEFADAASA 326
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT-EDEREMCARTIYCTNIDKKVTQ 368
+A + G + PV L T P NP + D R + T++ N+ TQ
Sbjct: 327 KKAVETMNGREIDGRPVN-LDLATPRGPPNPERRAKAFGDSRSEPSATLFVGNLAFSATQ 385
Query: 369 ADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNCSG 416
V F +V GEV +RL D +VEF E+A ALN G
Sbjct: 386 DAVYELFGAV-GEVVNVRLPTDRDSGQPKGFGYVEFADVETASKALNELG 434
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 19/160 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALNL 316
++Y D+D +VTE L LF VV R+C D N L +A+I F++ + RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFERPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 377 SVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+ G + ++ D ++ FV+F ESA AA++
Sbjct: 155 TFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAID 194
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 249 AQREEIIRR----------------TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP 292
++REE +RR +Y+ ++D V +E+L +F G V ++ +P
Sbjct: 308 SEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP 367
Query: 293 NSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
+ R F F+ +++ E RA + G M+G P+ +
Sbjct: 368 QGLSRGFGFVAYSNPEEALRALSEMNGKMIGKKPLYI 404
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++Y D+D TE QL LF G VV R+C D L +A++ F A+ ARA
Sbjct: 21 SLYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAARAIDV 80
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L ++ P+R++ S+ +P R+ I+ N+DK++ D K +
Sbjct: 81 LNFNVVNGKPIRIMYSQR-----DPAL-------RKSGVGNIFIKNLDKEI---DNKALY 125
Query: 376 ESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
++ G + ++ D ++ FV+F E+A A++ +G++L + V P
Sbjct: 126 DTFSQFGNIVSAKVAADGQGVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYVGP 182
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGA 310
E++ +Y+ +++ V + +L LF G + CR+ D + R AF+ F+ E
Sbjct: 296 EKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDASGASRGSAFVAFSSADEAT 355
Query: 311 RAALNLAGTMLGFYPVRV 328
RA + G M G P+ V
Sbjct: 356 RAVTEMNGKMAGTKPLYV 373
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL-NL 316
+Y+ ++++ + + + F G +++C + D + R + F++F D E ARAA+ +
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQF-DSEEAARAAIEKV 188
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVKLF 374
G + V V+ ++PR + E+E R +Y N ++ ++ ++K
Sbjct: 189 NGILCNSQKVHVV-----------KYIPRRDREQEKATQFRNLYVKNFNEDFSEQNMKEM 237
Query: 375 FESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAA-LNCSGVVLGSLPIRVS 427
FE G + +++ D S R FV F +SA+AA + +G LG + V+
Sbjct: 238 FEPY-GRITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVA 291
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 19/160 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALNL 316
++Y D+D +VTE L LF VV R+C D N L +A+I F++ + RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 377 SVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+ G + ++ D ++ FV+F ESA AA++
Sbjct: 155 TFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAID 194
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 249 AQREEIIRR----------------TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP 292
++REE +RR +Y+ ++D V +E+L +F G V ++ +P
Sbjct: 308 SEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP 367
Query: 293 NSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
+ R F F+ +++ E RA + G M+G P+ +
Sbjct: 368 QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404
>gi|320166417|gb|EFW43316.1| hypothetical protein CAOG_01360 [Capsaspora owczarzaki ATCC 30864]
Length = 986
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 17/192 (8%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNL 316
TV+VS++D + TEE + + F G +VD R+ P R + F+EF+ E A+ AL L
Sbjct: 689 TVFVSNLDFKATEEMIRSQFEQIGNIVDVRLVRKPTGRSRGYGFVEFS-SPEAAQKALAL 747
Query: 317 AGTMLGFYPVRVLPS----KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
+ P+ V PS K P P + + +T++ N+ + D+
Sbjct: 748 DRQPVLNRPMYVSPSVDKPKDGDGPA-----PSRYAQDGVDPKTLFVRNLSSLCRRDDLV 802
Query: 373 LFFESVCGEVYRLRLLGDYHHSTRI---AFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429
FE +V +R+ H R A+VEF E A AL G V+ PI
Sbjct: 803 TTFEKF-AKVVDVRMT--RHRDGRFTGRAYVEFANEEDAKLALAADGTVVRGQPISAQVC 859
Query: 430 KTPVRPRAPRLP 441
P + A P
Sbjct: 860 NPPTKAAASETP 871
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALNL 316
++Y D+D +VTE L LF VV R+C D N L +A+I F++ + RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 377 SVC--GEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN 413
+ G + ++ D S FV+F ESA AA++
Sbjct: 155 TFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAID 194
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 249 AQREEIIRR----------------TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP 292
++REE +RR +Y+ ++D V +E+L +F G V ++ +P
Sbjct: 308 SEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP 367
Query: 293 NSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
+ R F F+ +++ E RA + G M+G P+ +
Sbjct: 368 QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404
>gi|345497985|ref|XP_001603213.2| PREDICTED: nucleolysin TIA-1 isoform p40-like [Nasonia vitripennis]
Length = 386
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
++V D+ ++ + L F G++ DCR+ DP ++ + F+ F +AE A +
Sbjct: 62 IFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTMKSKGYGFVSFVKKAEAESAIGAM 121
Query: 317 AGTMLGF------YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
G LG + R P+ + A P ++ T+YC + +T+
Sbjct: 122 NGQWLGSRSIRTNWATRKPPAPKSEANTKPLTFDEVYNQSSPTNCTVYCGGLTNGLTEEL 181
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
++ F S G + +R+ D + AF+ F ESA A+
Sbjct: 182 MQKTF-SPFGSIQEIRVFKDKGY----AFIRFSTKESATHAI 218
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D++ VTE QL F G VV R+C D L +A++ F ++ A A
Sbjct: 33 SLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAIDV 92
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L ++ P+RVL S+ R R I+ N+DK + D K
Sbjct: 93 LNFQVINGKPIRVLYSQ------------RDPAVRRSGVGNIFIKNLDKAI---DNKALL 137
Query: 376 ESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
++ G + ++ D +++ FV+F AE+A AA+ N +G+ L + V P
Sbjct: 138 DTFAQFGTITSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGP 194
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGA 310
E++ +Y+ ++++ +E+L LF G + CR+ D + R AF+ F+ E
Sbjct: 308 EKMAGANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEAT 367
Query: 311 RAALNLAGTMLGFYPVRV 328
RA + G M+G P+ V
Sbjct: 368 RAVTEMNGKMVGAKPLYV 385
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 19/160 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALNL 316
++Y D+D +VTE L LF VV R+C D N L +A+I F++ + RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 377 SVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+ G + ++ D ++ FV+F ESA AA++
Sbjct: 155 TFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAID 194
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 249 AQREEIIRR----------------TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP 292
++REE +RR +Y+ ++D V +E+L +F G V ++ +P
Sbjct: 308 SEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP 367
Query: 293 NSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
+ R F F+ +++ E RA + G M+G P+ +
Sbjct: 368 QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL +F GQVV R+C D + L + ++ +T + ARA
Sbjct: 38 SLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDI 97
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T P+R++ S R R+ I+ N+DK + + F
Sbjct: 98 LNFTPFNNKPIRIMYSH------------RDPSIRKSGTGNIFIKNLDKTIDHKALHDTF 145
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVL 419
S G + ++ D +R FV+F E+A A++ +G++L
Sbjct: 146 SSF-GNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLL 190
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D +++E L LF G + C++ DP+ + R + F+ F+ E +RA +
Sbjct: 320 LYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMN 379
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 380 GKMVVSKPLYV 390
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA
Sbjct: 52 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEE 111
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 112 LNYTLIKGRPCRIMWSQ------------RDPALRKTGHGNVFIKNLDIAIDNKALHDTF 159
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +++ FV + AE+A A+ + +G++L
Sbjct: 160 -AAFGNILSCKVAQDENGNSKGYGFVHYETAEAATNAIKHVNGMLL 204
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 24/174 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D N + +
Sbjct: 123 RIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYG 182
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE-----DEREMCA 354
F+ + A ++ G +L V V +P+ E DE +
Sbjct: 183 FVHYETAEAATNAIKHVNGMLLNEKKVYVG-----------HHIPKKERQSKFDEMKANF 231
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL--GDYHHSTRIAFVEFVMAE 406
+Y NID +V+ + + FE+ G++ L GD S FV F E
Sbjct: 232 TNVYVKNIDPEVSDDEFRTLFENF-GQITSASLARDGDSGTSRGFGFVNFSSHE 284
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + D A G RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + S FV + AE+A A+ + +G++L
Sbjct: 151 -AAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLL 195
>gi|393215302|gb|EJD00793.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 589
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 13/178 (7%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAAL 314
+TV+V + V + LA F CG+VV R+ D N+ F F+EF AEGA AA+
Sbjct: 321 KTVFVGRLSWNVDNDWLAQEFADCGEVVSARVQMDRNTGKSRGFGFVEFA-TAEGANAAV 379
Query: 315 NLAGTM-LGFYPVRVLPSKTAIAPVNPTFLPRT-EDEREMCARTIYCTNIDKKVTQADVK 372
L G + V + KT+ P +P + D + ++ N+ +T+ +
Sbjct: 380 ALNGQKEIDGRAVNL--DKTSAKPADPERRAKAFGDSTSAPSSVLFVGNVSFDMTEDGLW 437
Query: 373 LFFESVCGEVYRLRLLGDYHHSTRI---AFVEFVMAESAIAALNCS-GVVLGSLPIRV 426
F + GEV +RL D + R+ +VEFV ESA A + G+ +G IR+
Sbjct: 438 EVF-AEYGEVKSVRLPTD-RDTQRLKGYGYVEFVDVESAKKAFEGARGMDVGGRTIRL 493
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + D A G RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + S FV + AE+A A+ + +G++L
Sbjct: 151 -AAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLL 195
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 31/193 (16%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ + TE+ L F G V+ RIC D L +A++ F A+ RA
Sbjct: 11 SLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQRALDT 70
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR-----TIYCTNIDKKVTQAD 370
+ ++ P+R++ S +R+ C R ++ N+D+ V D
Sbjct: 71 MNFDVIKGRPIRLMWS-----------------QRDACLRRSGIGNVFVKNLDRSV---D 110
Query: 371 VKLFFE--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVS 427
K +E S G++ +++ D S AFV F +A A+ +G V+ P+ V+
Sbjct: 111 NKTLYEHFSGFGKILSSKVMSDDQGSKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVA 170
Query: 428 PSKTPVRPRAPRL 440
P K P + R L
Sbjct: 171 PFK-PRKDREAEL 182
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +RR+ V+V ++D+ V + L F G G+++ ++ D +AF
Sbjct: 82 RLMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGKILSSKVMSDDQGSKGYAF 141
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F ++ A + G ++ PV V P F PR + E E+ +R T
Sbjct: 142 VHFQSQSAANCAIEQMNGKVINDRPVFVAP-----------FKPRKDREAELRSRASEFT 190
Query: 361 NI 362
N+
Sbjct: 191 NV 192
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALNL 316
+YV D+ + V EE L F G V R+C D + LR+ ++ + A+ A L
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+++ P+RV+ S R D R I+ N++ V A ++ F
Sbjct: 104 NHSLVLDKPIRVMWSN------------RDPDARRSGVGNIFVKNLNNSVDNASLQELF- 150
Query: 377 SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVS 427
S G+V ++ + ++R FV+F ESA A+ N +G + + V+
Sbjct: 151 SKFGDVLSCKVAKNEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVA 203
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 12/178 (6%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALNLA 317
+Y+ +D +TEE + F G +V +I P+ S L F F+ F + +A +
Sbjct: 222 LYMKHLDDDITEELVKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMH 281
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER--EMCART----IYCTNIDKKVTQADV 371
G +LG + V ++ +L R +E+ E+ ++ +Y NI +V +
Sbjct: 282 GMLLGSKALYV--ARAQKKEERKQYLQRLHEEKRNEIITKSNESNVYIKNIHDEVDDDAL 339
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVLGSLPIRVS 427
+ F G + +++ D +R FV + E A + +N GV+ P+ V+
Sbjct: 340 RARFAEY-GNITSAKVMRDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFFGKPLYVA 396
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEF 303
T + EE + TV+V ++ V EE LAA F CG V RI D + F ++ F
Sbjct: 172 TKKPKTEEPVNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAKGFGYVTF 231
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNID 363
+ A+ AA+ L GT L +RV S T P + R E + T++ N+
Sbjct: 232 -ESADALTAAMALTGTELDGREIRVDVS-TPKPPRDGNRQGRKEAPQSAPTTTLFLGNLS 289
Query: 364 KKVTQADVKLFFESVCGEVYRLRLLGDYHHST--RIAFVEFVMAESAIAAL-NCSGVVLG 420
VT+ +++ F S G++ +R D +VE+ E+A A+ +GV +
Sbjct: 290 FNVTEDEIRESF-SQYGQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQKAVEGLNGVEIA 348
Query: 421 SLPIRV 426
+R+
Sbjct: 349 GRSLRL 354
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
+ + ++YV D+D VT+ QL LF GQVV R+C D ++ L + ++ +++ + A
Sbjct: 27 QFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAA 86
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA L T L P+R++ S R R+ I+ N+DK +
Sbjct: 87 RALDVLNFTPLNNKPLRIMYSH------------RDPSIRKSGMANIFIKNLDKTIDHKA 134
Query: 371 VKLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN 413
+ F S G + ++ D S FV+F E+A A++
Sbjct: 135 LHDTFSSF-GNILSCKVATDASGQSKGYGFVQFDSEEAAQNAID 177
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTD 305
SL E+ +Y+ ++D V +E+L LF G + C++ DP+ + R + F+ F+
Sbjct: 302 SLESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAFST 361
Query: 306 EAEGARAALNLAGTMLGFYPVRVLPSK 332
E +RA L G M+ P+ V P++
Sbjct: 362 PEEASRALAELNGKMVVSKPLYVAPAQ 388
>gi|299743563|ref|XP_001835851.2| RNA-binding protein Prp24 [Coprinopsis cinerea okayama7#130]
gi|298405712|gb|EAU85916.2| RNA-binding protein Prp24 [Coprinopsis cinerea okayama7#130]
Length = 1042
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 48/222 (21%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-- 315
TV+V+D+ +QVTE++L +LF CG + + +I PN+V+ A +EF E + AAL
Sbjct: 669 TVFVADLPEQVTEDELKSLFKDCGSIREVKITKLPNAVV--ALVEFF-ERDSVPAALTKD 725
Query: 316 ---LAGTMLGF---YPVRVLPSK---------------------------TAIAPVNP-- 340
L G + + + VR PSK + P P
Sbjct: 726 KKRLQGQEISYGMLFDVR-WPSKKFKTTRRFCYVQFTSPDAAQQALELHRKELEPNLPLN 784
Query: 341 TFLPRTEDEREMC-----ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH-HS 394
++ E ++E R +Y + K T+AD++ F + G+V +R+ + H+
Sbjct: 785 VYISNPERKKERTDHDANEREVYVAGLSKFTTKADLEKLF-ATYGKVKDVRMATEQDGHA 843
Query: 395 TRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPR 436
AFVE+ + A AL+ + L I V+ + VR R
Sbjct: 844 RGYAFVEYEEPQDARRALDANNYELKKRRIAVTLADPRVRAR 885
>gi|226469236|emb|CAX70097.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 463
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 11/182 (6%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR---FAFIEFTDEAE 308
EE RTV+V + ++ + L F G++ D R+ D N R A++EF E E
Sbjct: 99 EERDARTVFVWQLSARIRQRDLEDFFTSVGKIRDVRLIMD-NKTKRSKGIAYVEFR-EVE 156
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT-FLPRTEDEREMCARTIYCTNIDKKVT 367
A+ AL L GT L P+++ S V+ T LPR + + + +Y ++ +T
Sbjct: 157 SAQLALGLTGTRLLGVPIQIQQSHAEKNRVSATPSLPRPSQQNKGPMK-LYIGSLHYNIT 215
Query: 368 QADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPI 424
+ +K FE G++ ++L+ D + S FV +V ++ A AL+ +G L P+
Sbjct: 216 EEMLKGIFEPF-GKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALDQLNGFELAGRPM 274
Query: 425 RV 426
+V
Sbjct: 275 KV 276
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 16/108 (14%)
Query: 339 NPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTR 396
+P P D ART++ + ++ Q D++ FF SV G++ +RL+ D S
Sbjct: 93 SPELSPEERD-----ARTVFVWQLSARIRQRDLEDFFTSV-GKIRDVRLIMDNKTKRSKG 146
Query: 397 IAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK--------TPVRPR 436
IA+VEF ESA AL +G L +PI++ S TP PR
Sbjct: 147 IAYVEFREVESAQLALGLTGTRLLGVPIQIQQSHAEKNRVSATPSLPR 194
>gi|328792887|ref|XP_624017.2| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 1 [Apis
mellifera]
Length = 367
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
++V D+ ++ + L F G++ DCR+ DP ++ + F+ F +AE A +
Sbjct: 57 IFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSFVKKAEAESAIGAM 116
Query: 317 AGTMLGF------YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
G LG + R P+ + A P ++ T+YC + +T+
Sbjct: 117 NGQWLGSRSIRTNWATRKPPAPKSEANAKPLTFDEVYNQSSPTNCTVYCGGLTNGLTEEL 176
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
++ F S G + +R+ D + AF+ F ESA A+
Sbjct: 177 MQKTF-SPFGSIQEIRVFKDKGY----AFIRFSTKESATHAI 213
>gi|86170621|ref|XP_966051.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|46362293|emb|CAG25231.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 582
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 79/214 (36%), Gaps = 50/214 (23%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAAL 314
I VYV ++ +TEE + F C +++ P ++ IEF +EG A
Sbjct: 7 IANVVYVKNLSSDITEENIREKFGSCDEIISITFKNFPGLNQKYCQIEFKT-SEGITNAS 65
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER------------------------ 350
L G L P+ V + I N + L TE ++
Sbjct: 66 RLNGESLLNVPMVVSVIEPIINNTNLSELSTTECDKNVNSLLDVRNSITNQGVQTLLLQK 125
Query: 351 ------------------------EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386
++ ++ +Y NI +K + D+K FF++V G +
Sbjct: 126 QVISEQKKRLVDFQNSLNEKNNKFDVFSKIVYMENIPEKYGEEDIKAFFQNV-GNTTSYK 184
Query: 387 LLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLG 420
L + AFVEF E A AALN SG +G
Sbjct: 185 LQYNEQKKVHTAFVEFKNEEHAKAALNLSGTKVG 218
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 237 QGKRRMNSRTSLAQRE---EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN 293
Q KR ++ + SL ++ ++ + VY+ +I ++ EE + A F G ++ +
Sbjct: 131 QKKRLVDFQNSLNEKNNKFDVFSKIVYMENIPEKYGEEDIKAFFQNVGNTTSYKLQYNEQ 190
Query: 294 SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
+ AF+EF +E E A+AALNL+GT +G + +
Sbjct: 191 KKVHTAFVEFKNE-EHAKAALNLSGTKVGLHEI 222
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + D A G RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + S FV + AE+A A+ + +G++L
Sbjct: 151 -AAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLL 195
>gi|293336608|ref|NP_001168401.1| uncharacterized protein LOC100382170 [Zea mays]
gi|223948043|gb|ACN28105.1| unknown [Zea mays]
gi|414585352|tpg|DAA35923.1| TPA: hypothetical protein ZEAMMB73_028165 [Zea mays]
Length = 432
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLR-- 297
R+N ++ +R++ T++V D+ VT+ L F V V ++ D ++
Sbjct: 166 RLNWASAGEKRDDTPEYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKG 225
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP--SKTAIAPVNPTFLPRT---EDEREM 352
+ F++F D E ARA + G P+R+ P S+ V +P + + E +
Sbjct: 226 YGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAASRKNTGGVVQERVPNSQGAQSENDP 285
Query: 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA-IAA 411
TI+ +D VT+ +K F S GEV +++ R FV+FV SA A
Sbjct: 286 NNTTIFVGGLDPNVTEDTLKQVF-SPYGEVVHVKI----PVGKRCGFVQFVTRPSAEQAL 340
Query: 412 LNCSGVVLGSLPIRVS 427
L G ++G+ +R+S
Sbjct: 341 LMLQGALIGAQNVRLS 356
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 228 AVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCR 287
A RK + G + R+ + + T++V +D VTE+ L +F G+VV +
Sbjct: 259 AASRKNTGGVVQERVPNSQGAQSENDPNNTTIFVGGLDPNVTEDTLKQVFSPYGEVVHVK 318
Query: 288 I-CGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
I G R F++F +A L L G ++G VR+
Sbjct: 319 IPVGK-----RCGFVQFVTRPSAEQALLMLQGALIGAQNVRL 355
>gi|19113513|ref|NP_596721.1| RNA-binding protein Prp24 (predicted) [Schizosaccharomyces pombe
972h-]
gi|74698432|sp|Q9USY2.1|YOW4_SCHPO RecName: Full=Uncharacterized RNA-binding protein C1861.04c
gi|5734577|emb|CAB52740.1| RNA-binding protein Prp24 (predicted) [Schizosaccharomyces pombe]
Length = 1014
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEAEGARAALNLA 317
+YV++ E + LF G VVD R N+ RF +++ E A AL L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDE-AHNALQLH 726
Query: 318 GTML-GFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+L YP++V S P+ T PR+ E R +Y TNID KV + DV+ FF
Sbjct: 727 KKLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVETFFR 778
Query: 377 SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
G+V +R+ ++ +V + A AL+ +G LG+ + V SK
Sbjct: 779 DY-GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSK 831
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
R +YV++ID +V E+ + F GQV RI N F ++ T + A AL+
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTN-QDAENALSA 815
Query: 317 AGTMLGFYPVRVLPS-------KTAIAPVNPTFLPRTEDERE-------------MCART 356
AG LG + V+ S KT ++ + L ++ + E + +++
Sbjct: 816 AGKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKS 875
Query: 357 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV-MAESAIAALNCS 415
+ TN+D V +A ++ FES G++YR+ L H A VEF+ + ++ A+L
Sbjct: 876 LGVTNVDGTVNEARLRSLFESY-GKLYRVVL----HPEHEGAVVEFLDIHDAGKASLALE 930
Query: 416 GVVLGSLPIRVS 427
G +G + ++
Sbjct: 931 GHEIGGRLLHIT 942
>gi|356521983|ref|XP_003529629.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 397
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 25/195 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ VT+ L F + +VV R+ G + F+ F DE+E R
Sbjct: 155 TIFVGDLAADVTDYLLQETFRARYPSIKGAKVVIDRLTGRTKG---YGFVRFGDESEQVR 211
Query: 312 AALNLAGTMLGFYPVRVLPS-----KTAIAPVNPTFLPR-TEDEREMCARTIYCTNIDKK 365
A + G + P+R+ P+ T P P+ ++E + TI+ N+D
Sbjct: 212 AMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPN 271
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALNCSGVVLGSL 422
VT ++ F GE+ +++ R FV+F AE A+ LN G +LG
Sbjct: 272 VTDDHLRQVFGHY-GELVHVKIPA----GKRCGFVQFADRSCAEEALRVLN--GTLLGGQ 324
Query: 423 PIRVSPSKTPVRPRA 437
+R+S ++P +A
Sbjct: 325 NVRLSWGRSPSNKQA 339
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ Q VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
+ S G + +++ D + S FV F E+A A++ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + +K F G ++++ D + ++ FV F E A A++
Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKY-GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 26/181 (14%)
Query: 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNH-NA 218
GD D R L+E+F K P S+ ++N GF GF + F H +A
Sbjct: 199 GDDMNDER-LKEMFGKYGPAL------SVKVMTDDNGKSKGF--GFVS-----FERHEDA 244
Query: 219 RNGNVNANAAVRRKKSF--GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQ 267
+ N KS G+ ++++ +T L ++ E +++ +YV ++D
Sbjct: 245 QKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR 327
+ +E+L F+ G + ++ + F F+ F+ E +A + G ++ P+
Sbjct: 305 IDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 328 V 328
V
Sbjct: 365 V 365
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 27/180 (15%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEF--TDEAEGARAA 313
++YV D+D VT+ QL F QVV R+C D N+ L + ++ + TD+AE A
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 314 LN---LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
LN L G M +R+ T+ R R ++ N+DK V
Sbjct: 107 LNYSYLNGKM-----IRI------------TYSSRDSSARRSGVGNLFVKNLDKSVDNKT 149
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
+ F S CG + ++ D+ +R FV+F +SA A+ +G VL I V P
Sbjct: 150 LHEAF-SGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGP 208
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D VT+E+L LF G + C++ DP+ + + F+ F+ +E +R +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 318 GTMLGFYPVRV 328
G M+G P+ V
Sbjct: 390 GKMVGGKPLYV 400
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F+ G ++ R+C D + LR+A+I F A+ RA
Sbjct: 12 SLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEVIKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A++ +G++L
Sbjct: 117 DTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQQAISTMNGMLL 163
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F +A + G +L V V F R E E E+ AR + T
Sbjct: 143 VHFETHEAAQQAISTMNGMLLNDRKVFV-----------GHFKSRREREAELRARAMEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL 412
NI K Q D+ LF S G++ ++++ D + HS FV F E A A+
Sbjct: 192 NIYVKNLQVDMDEQGLQDLF--SQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAV 248
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 27/182 (14%)
Query: 161 DFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNA 218
+ + DM E LQ+LFS+ + S+ +NN GF F N F H
Sbjct: 197 NLQVDMDEQGLQDLFSQFGKLL------SVKVMKDNNGHSRGFG---FVN----FEKHEE 243
Query: 219 RNGNV---NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQ 266
V N R+ G+ ++R+ + L ++ E +++ +YV ++D
Sbjct: 244 AQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVNLYVKNLDD 303
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
+ +E+L F G + ++ + F F+ F+ E +A + G ++G P+
Sbjct: 304 SIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPL 363
Query: 327 RV 328
V
Sbjct: 364 YV 365
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ Q VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
+ S G + +++ D + S FV F E+A A++ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + +K F G ++++ D + ++ FV F E A A++
Sbjct: 192 NVYIKNFGDDMNDERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 26/181 (14%)
Query: 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNH-NA 218
GD D R L+E+F K P S+ ++N GF GF + F H +A
Sbjct: 199 GDDMNDER-LKEMFGKYGPAL------SVKVMTDDNGKSKGF--GFVS-----FERHEDA 244
Query: 219 RNGNVNANAAVRRKKSF--GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQ 267
+ N KS G+ ++++ +T L ++ E +++ +YV ++D
Sbjct: 245 QKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR 327
+ +E+L F+ G + ++ + F F+ F+ E +A + G ++ P+
Sbjct: 305 IDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 328 V 328
V
Sbjct: 365 V 365
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVVCDEHGSRGFGFVHFETYEAAQQAINTMNGMLL 163
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + +G RA
Sbjct: 54 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 113
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ +P R+ I+ N+D + + F
Sbjct: 114 LNYTLIKGKPCRIMWSQR-----DPAL-------RKTGHGNIFIKNLDAAIDNKALHDTF 161
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D +R FV + AE+A AA+ + +G++L
Sbjct: 162 -AAFGNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLL 206
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ Q VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
+ S G + +++ D + S FV F E+A A++ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 69/178 (38%), Gaps = 20/178 (11%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413
+Y N + + +K F + + D S FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHEDAQKAVD 249
>gi|112734730|ref|NP_001036780.1| sex-lethal isoform L [Bombyx mori]
gi|77379388|gb|ABA71351.1| sex-lethal isoform 1 [Bombyx mori]
Length = 336
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 22/181 (12%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGA 310
+ R + V+ + Q +TE+ L A+FV G + CR+ D F F+ FT E + A
Sbjct: 59 DTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAA 118
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA G Y +R K + A P +D +E +Y TN+ + +T
Sbjct: 119 RAIDTFNG-----YQLRNKRLKVSYA------RPSGDDIKET---NLYVTNLPRAITDDQ 164
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVM---AESAIAALNCSGVVLGSLPIR 425
++ F G + + +L D + T +AFV + A+ AIAALN G+ P+
Sbjct: 165 LETIFGKY-GRIVQKHILRDKNSGTPRGVAFVRYDKREEAQEAIAALNNVIPEGGTEPLS 223
Query: 426 V 426
V
Sbjct: 224 V 224
>gi|225543108|ref|NP_001139415.1| sex lethal [Tribolium castaneum]
Length = 218
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 22/195 (11%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
E + + V+ I Q TEE LA +F G+V +I D N+ F F+++ +E + A
Sbjct: 23 ECDKSKLIVNYIPQFATEEDLALIFTPIGRVESIKIMRDYNTGYSFGFGFVKYFNEEDAA 82
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
+A + G ++V S+ A +M A +Y TN+ K VT+ D
Sbjct: 83 KAIQVINGMNYKNKRLKVSYSRPPGA--------------DMKASNLYITNLPKDVTEDD 128
Query: 371 VKLFFESVCGEVYRLRLLGDYHHST--RIAFVEFVMAESAIAAL-NCSGVVL--GSLPIR 425
V F S GE+ + +L D +AFV F E A AA+ + G +L LP+
Sbjct: 129 VHRLF-SNYGEIIQKSVLKDKITGMPRGVAFVRFSRGEEAKAAIADLDGKLLENAMLPLS 187
Query: 426 VSPSKTPVRPRAPRL 440
V ++ R +A L
Sbjct: 188 VRVAEDHGRQKAQYL 202
>gi|224128984|ref|XP_002328861.1| predicted protein [Populus trichocarpa]
gi|222839291|gb|EEE77628.1| predicted protein [Populus trichocarpa]
Length = 950
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAE 308
A++E+ +++T++VS++ +T EQL LF CG VV+C I +S A+IE++ + E
Sbjct: 341 ARKEDALKKTLHVSNLSPLLTVEQLKQLFSFCGTVVECTIADSKHS----AYIEYS-KPE 395
Query: 309 GARAALNLAGTMLGFYPVRVLPSKT 333
A AAL L +G P+ V +K+
Sbjct: 396 EATAALALNNMDVGGRPLNVETAKS 420
>gi|89885655|dbj|BAE86938.1| sex-lethal [Bombyx mori]
Length = 336
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 22/181 (12%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGA 310
+ R + V+ + Q +TE+ L A+FV G + CR+ D F F+ FT E + A
Sbjct: 59 DTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAA 118
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA G Y +R K + A P +D +E +Y TN+ + +T
Sbjct: 119 RAIDTFNG-----YQLRNKRLKVSYA------RPSGDDIKET---NLYVTNLPRAITDDQ 164
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVM---AESAIAALNCSGVVLGSLPIR 425
++ F G + + +L D + T +AFV + A+ AIAALN G+ P+
Sbjct: 165 LETIFGKY-GRIVQKHILRDKNSGTPRGVAFVRYDKREEAQEAIAALNNVIPEGGTEPLS 223
Query: 426 V 426
V
Sbjct: 224 V 224
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 27/180 (15%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEF--TDEAEGARAA 313
++YV D+D VT+ QL F QVV R+C D N+ L + ++ + TD+AE A
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 314 LN---LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
LN L G M +R+ T+ R R ++ N+DK V
Sbjct: 107 LNYSYLNGKM-----IRI------------TYSSRDSSARRSGVGNLFVKNLDKSVDNKT 149
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
+ F S CG + ++ D+ +R FV+F +SA A+ +G VL I V P
Sbjct: 150 LHEAF-SGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGP 208
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D VT+E+L LF G + C++ DP+ + + F+ F+ +E +R +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 318 GTMLGFYPVRV 328
G M+G P+ V
Sbjct: 390 GKMVGGKPLYV 400
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+D V + QL LF QVV RIC D L + ++ F++ + A+A
Sbjct: 25 SLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDV 84
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T L +R++ + R R+ A ++ N+DK + D K F
Sbjct: 85 LNFTPLNGKTIRIM------------YSIRDPSARKSGAANVFIKNLDKAI---DHKALF 129
Query: 376 E--SVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+ S G + ++ D S FV+F ESA A++ +G+++ + V P
Sbjct: 130 DTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGP 186
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 236 GQGKRRMNSRTSLAQR-EEIIRRTV--------YVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ +++ L +R E+ + TV Y+ ++D V +E+L LF G + C
Sbjct: 276 GKAQKKSERELELKERNEQSTKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSC 335
Query: 287 RICGDPNSVLRFA-FIEFTDEAEGARAALN-LAGTMLGFYPVRV 328
++ DP+ + R + F+ F+ AEGA AL + G M+ P+ V
Sbjct: 336 KVMRDPSGISRGSGFVAFS-IAEGASWALGEMNGKMVAGKPLYV 378
>gi|194742700|ref|XP_001953839.1| GF17967 [Drosophila ananassae]
gi|190626876|gb|EDV42400.1| GF17967 [Drosophila ananassae]
Length = 471
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 20/190 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T+YV ++D V+E+ L ALF G V C+I +P + +AFIE++ + A AL
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGHVKSCKIIREPGND-PYAFIEYST-YQAATTALTA 64
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
L + + + A +P N P+T+ I+ ++ ++ ++ F
Sbjct: 65 MNKRL--FLDKEIKVNWATSPGN---QPKTDISSH---HHIFVGDLSPEIETETLREAFA 116
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
GE+ R++ D H S AFV FV AE+AI A+N G +GS IR + S
Sbjct: 117 PF-GEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAITAMN--GQWIGSRSIRTNWSTR 173
Query: 432 PVRPRAPRLP 441
+ P PR P
Sbjct: 174 KLPP--PREP 181
>gi|17944383|gb|AAL48083.1| RE71384p [Drosophila melanogaster]
Length = 470
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T+YV ++D V+E+ L ALF G V C+I +P + +AFIE+++ + A AL
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSN-YQAATTALTA 64
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
L + + + A +P N P+T+ I+ ++ ++ ++ F
Sbjct: 65 MNKRL--FLEKEIKVNWATSPGN---QPKTDISSH---HHIFVGDLSPEIETETLREAFA 116
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
GE+ R++ D H S AFV FV AE+AI A+N G +GS IR + S
Sbjct: 117 PF-GEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRTNWSTR 173
Query: 432 PVRPRAPRLP 441
+ P PR P
Sbjct: 174 KLPP--PREP 181
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQQAINTMNGMLL 163
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML + K + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQQAINTMNGMLL 163
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML + K + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +V+E L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALET 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K F
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALF 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
+ S G + +++ D H S FV F ++A A++ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDEHGSKGYGFVHFETRDAAERAIDKMNGMLL 163
>gi|66804529|ref|XP_635997.1| hypothetical protein DDB_G0289941 [Dictyostelium discoideum AX4]
gi|60464334|gb|EAL62483.1| hypothetical protein DDB_G0289941 [Dictyostelium discoideum AX4]
Length = 481
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 93/222 (41%), Gaps = 38/222 (17%)
Query: 231 RKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDID-QQVTEEQLAALFVGCGQVVDCRIC 289
RK + K +M+S+ REE RTV+VS+I+ + +L LF GQ+ R
Sbjct: 234 RKDEKTKQKLKMDSK---KIREEQNPRTVFVSNINLNHAKDNELKQLFKPFGQIESIRFR 290
Query: 290 GDPNSVL-----------RF--------AFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330
P S + F A+I F A+ +AA + G +RV
Sbjct: 291 SIPLSSIDGNRKETFIKKEFHEKRETCNAYIVFKQIADAKKAAKQMNGKEAFGKHLRV-- 348
Query: 331 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD 390
+A PT + A+TI+ NI + + ++ L F+ G+V +R++ D
Sbjct: 349 ---DMADHKPT--------KASDAKTIFIGNIPYETEEEELFLIFDKTFGDVVSVRIIRD 397
Query: 391 YHHSTRIAF--VEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
H + F V F E+A A+ + G IR+ P+K
Sbjct: 398 SHTNIGKGFGYVNFSTDETASTAIAQKSIQFGKREIRIFPTK 439
>gi|440487895|gb|ELQ67659.1| RNA-binding protein rsd1 [Magnaporthe oryzae P131]
Length = 570
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 7/179 (3%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
+E RRTV+V + ++ +L F G V + +I D N ++EF E E
Sbjct: 170 DERDRRTVFVQQLAARLRTRELKEFFEKAGPVAEAQIVKDRVSNRSKGVGYVEFKTE-ES 228
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
AAL L G L PV V P++ T T+ + + +Y NI +T+
Sbjct: 229 VAAALQLTGQKLLGIPVIVQPTEAEKNRAVKTESTGTQ-QTSVPFHRLYVGNIHFSITEQ 287
Query: 370 DVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
D++ FE GE+ ++L D +R FV+F A A AL +G L PIRV
Sbjct: 288 DLQNVFEPF-GELEFVQLQKDDSGRSRGYGFVQFRDATQAREALEKMNGFDLAGRPIRV 345
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFV 403
TEDER+ RT++ + ++ ++K FFE G V +++ D + S + +VEF
Sbjct: 168 TEDERDR--RTVFVQQLAARLRTRELKEFFEK-AGPVAEAQIVKDRVSNRSKGVGYVEFK 224
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSK 430
ES AAL +G L +P+ V P++
Sbjct: 225 TEESVAAALQLTGQKLLGIPVIVQPTE 251
>gi|24649519|ref|NP_732945.1| Rox8, isoform D [Drosophila melanogaster]
gi|442620772|ref|NP_732944.2| Rox8, isoform E [Drosophila melanogaster]
gi|442620774|ref|NP_001262897.1| Rox8, isoform G [Drosophila melanogaster]
gi|442620776|ref|NP_001262898.1| Rox8, isoform H [Drosophila melanogaster]
gi|23172126|gb|AAN13978.1| Rox8, isoform D [Drosophila melanogaster]
gi|211938549|gb|ACJ13171.1| FI04408p [Drosophila melanogaster]
gi|440217818|gb|AAN13977.2| Rox8, isoform E [Drosophila melanogaster]
gi|440217819|gb|AGB96277.1| Rox8, isoform G [Drosophila melanogaster]
gi|440217820|gb|AGB96278.1| Rox8, isoform H [Drosophila melanogaster]
Length = 470
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T+YV ++D V+E+ L ALF G V C+I +P + +AFIE+++ + A AL
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSN-YQAATTALTA 64
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
L + + + A +P N P+T+ I+ ++ ++ ++ F
Sbjct: 65 MNKRL--FLEKEIKVNWATSPGN---QPKTDISSH---HHIFVGDLSPEIETETLREAFA 116
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
GE+ R++ D H S AFV FV AE+AI A+N G +GS IR + S
Sbjct: 117 PF-GEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRTNWSTR 173
Query: 432 PVRPRAPRLP 441
+ P PR P
Sbjct: 174 KLPP--PREP 181
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ Q VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
+ S G + +++ D + S FV F E+A A++ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + +K F G ++++ D + ++ FV F E A A++
Sbjct: 192 NVYIKNFGDDMNDERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ + P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 77 MNFDTIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 121
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA-IAALNCSGVVL 419
+ S G + +++ D H S FV F E+A IA +G++L
Sbjct: 122 DTFSAFGNILSCKIVCDEHGSRGYGFVHFETEEAARIAIEKVNGMLL 168
>gi|124513200|ref|XP_001349956.1| splicing factor, putative [Plasmodium falciparum 3D7]
gi|23615373|emb|CAD52364.1| splicing factor, putative [Plasmodium falciparum 3D7]
Length = 864
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN 413
T+ N+D K + D+ FF V G+V ++ + D S +A+VEF E+ I AL
Sbjct: 488 TVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKALA 547
Query: 414 CSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
+G++L + PI++ S+ + RA + H
Sbjct: 548 ANGMMLKNRPIKIQSSQAE-KNRAAKAAKH 576
>gi|256082940|ref|XP_002577709.1| splicing factor [Schistosoma mansoni]
gi|360043602|emb|CCD81148.1| putative splicing factor [Schistosoma mansoni]
Length = 463
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 11/182 (6%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR---FAFIEFTDEAE 308
EE RTV+V + ++ + L F G++ D R+ D N R A++EF E E
Sbjct: 99 EERDARTVFVWQLSARIRQRDLEDFFTSVGKIRDVRLIMD-NKTKRSKGIAYVEFR-EVE 156
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT-FLPRTEDEREMCARTIYCTNIDKKVT 367
A+ AL L GT L P+++ S V+ T LPR + + +Y ++ +T
Sbjct: 157 SAQLALGLTGTRLLGVPIQIQQSHAEKNRVSATPSLPRPSQQNRGPMK-LYIGSLHYNIT 215
Query: 368 QADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPI 424
+ +K FE G++ ++L+ D + S FV +V ++ A AL+ +G L P+
Sbjct: 216 EEMLKGIFEPF-GKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALDQLNGFELAGRPM 274
Query: 425 RV 426
+V
Sbjct: 275 KV 276
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 16/117 (13%)
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
PS+T +P P D ART++ + ++ Q D++ FF SV G++ +RL+
Sbjct: 84 PSRTERRQKSPELSPEERD-----ARTVFVWQLSARIRQRDLEDFFTSV-GKIRDVRLIM 137
Query: 390 D--YHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK--------TPVRPR 436
D S IA+VEF ESA AL +G L +PI++ S TP PR
Sbjct: 138 DNKTKRSKGIAYVEFREVESAQLALGLTGTRLLGVPIQIQQSHAEKNRVSATPSLPR 194
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQQAINTMNGMLL 163
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML + K + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 24/169 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ Q VTE L F G +V R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGQPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVM---AESAIAALNCSGVVL 419
+ S G + +++ D + S FV F AE AI +N G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSRGYGFVHFETHDAAERAIEKMN--GMLL 163
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSRGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETHDAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAREFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F S G +R++ D R FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDEKLKEIF-SKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVD 249
>gi|24649513|ref|NP_732942.1| Rox8, isoform B [Drosophila melanogaster]
gi|24649515|ref|NP_732943.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301090|gb|AAF56224.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301091|gb|AAF56225.1| Rox8, isoform B [Drosophila melanogaster]
Length = 464
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T+YV ++D V+E+ L ALF G V C+I +P + +AFIE+++ + A AL
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSN-YQAATTALTA 64
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
L + + + A +P N P+T+ I+ ++ ++ ++ F
Sbjct: 65 MNKRL--FLEKEIKVNWATSPGN---QPKTDISSH---HHIFVGDLSPEIETETLREAFA 116
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
GE+ R++ D H S AFV FV AE+AI A+N G +GS IR + S
Sbjct: 117 PF-GEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRTNWSTR 173
Query: 432 PVRPRAPRLP 441
+ P PR P
Sbjct: 174 KLPP--PREP 181
>gi|77379390|gb|ABA71352.1| sex-lethal isoform 2 [Bombyx mori]
Length = 313
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 22/181 (12%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGA 310
+ R + V+ + Q +TE+ L A+FV G + CR+ D F F+ FT E + A
Sbjct: 59 DTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAA 118
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA G Y +R K + A P +D +E +Y TN+ + +T
Sbjct: 119 RAIDTFNG-----YQLRNKRLKVSYA------RPSGDDIKET---NLYVTNLPRAITDDQ 164
Query: 371 VKLFFESVCGEVYRLRLLGDYHHST--RIAFVEFVM---AESAIAALNCSGVVLGSLPIR 425
++ F G + + +L D + T +AFV + A+ AIAALN G+ P+
Sbjct: 165 LETIFGKY-GRIVQKHILRDKNSGTPRGVAFVRYDKREEAQEAIAALNNVIPEGGTEPLS 223
Query: 426 V 426
V
Sbjct: 224 V 224
>gi|351697106|gb|EHB00025.1| Polyadenylate-binding protein 2, partial [Heterocephalus glaber]
Length = 189
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ +R E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 45 SIEERMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 101
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 102 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 132
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E+ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 47 EERMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 105
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 106 KESVRTSLALDESLFRGRQIKVIPKRT 132
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ Q VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGQPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N ++ ++ F S G +R++ D + +R FV F E A A++
Sbjct: 192 NVYIKNFGDEMDDEKLRELF-SKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVD 249
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 17/180 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGA 310
+ + ++YV D++ V+E QL +F GQVV R+C D L ++++ + + +
Sbjct: 20 QFVSTSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDAT 79
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA L T + P+R++ F R R+ I+ N+DK +
Sbjct: 80 RALELLNFTGVNGKPIRIM------------FSHRDPSIRKSGTANIFIKNLDKSIDNKA 127
Query: 371 VKLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
+ F + G + ++ D S FV+F ESA A+ +G++L + V P
Sbjct: 128 LHDTF-AAFGNILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGP 186
>gi|440470687|gb|ELQ39749.1| RNA-binding protein rsd1 [Magnaporthe oryzae Y34]
Length = 566
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 7/179 (3%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
+E RRTV+V + ++ +L F G V + +I D N ++EF E E
Sbjct: 170 DERDRRTVFVQQLAARLRTRELKEFFEKAGPVAEAQIVKDRVSNRSKGVGYVEFKTE-ES 228
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
AAL L G L PV V P++ T T+ + + +Y NI +T+
Sbjct: 229 VAAALQLTGQKLLGIPVIVQPTEAEKNRAVKTESTGTQ-QTSVPFHRLYVGNIHFSITEQ 287
Query: 370 DVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
D++ FE GE+ ++L D +R FV+F A A AL +G L PIRV
Sbjct: 288 DLQNVFEPF-GELEFVQLQKDDSGRSRGYGFVQFRDATQAREALEKMNGFDLAGRPIRV 345
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFV 403
TEDER+ RT++ + ++ ++K FFE G V +++ D + S + +VEF
Sbjct: 168 TEDERDR--RTVFVQQLAARLRTRELKEFFEK-AGPVAEAQIVKDRVSNRSKGVGYVEFK 224
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSK 430
ES AAL +G L +P+ V P++
Sbjct: 225 TEESVAAALQLTGQKLLGIPVIVQPTE 251
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
I ++YV D+ +V+E+ L +F G V + R+C D N+ L +A++ + + A+ RA
Sbjct: 8 ISSSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERA 67
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T + P R++ S+ R R+ ++ N+DK + D K
Sbjct: 68 LDTLNNTPIRGKPCRIMWSQ------------RDPSLRKSGVGNVFIKNLDKGI---DHK 112
Query: 373 LFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
++ S G + +++ D ++S++ FV + +SA A+ +G+++ + V P
Sbjct: 113 ALYDTFSAFGNILSCKVVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGP 172
Query: 429 SKT 431
K+
Sbjct: 173 FKS 175
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L +F GQV R+C D S L +A++ F A+G +A
Sbjct: 48 SLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALEE 107
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T + R++ S+ R R + I+ N+ + + F
Sbjct: 108 LNYTPIKGKACRIMWSQ------------RDPSLRRNGSGNIFIKNLHPAIDNKTLHDTF 155
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
S G++ ++ D + +++ FV + +ESA AA+ N +G++L + V P
Sbjct: 156 -SAFGKILSCKIATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGP 209
>gi|270009354|gb|EFA05802.1| hypothetical protein TcasGA2_TC030646 [Tribolium castaneum]
Length = 212
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 22/195 (11%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
E + + V+ I Q TEE LA +F G+V +I D N+ F F+++ +E + A
Sbjct: 23 ECDKSKLIVNYIPQFATEEDLALIFTPIGRVESIKIMRDYNTGYSFGFGFVKYFNEEDAA 82
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
+A + G ++V S+ A +M A +Y TN+ K VT+ D
Sbjct: 83 KAIQVINGMNYKNKRLKVSYSRPPGA--------------DMKASNLYITNLPKDVTEDD 128
Query: 371 VKLFFESVCGEVYRLRLLGDYHHST--RIAFVEFVMAESAIAAL-NCSGVVL--GSLPIR 425
V F S GE+ + +L D +AFV F E A AA+ + G +L LP+
Sbjct: 129 VHRLF-SNYGEIIQKSVLKDKITGMPRGVAFVRFSRGEEAKAAIADLDGKLLENAMLPLS 187
Query: 426 VSPSKTPVRPRAPRL 440
V ++ R +A L
Sbjct: 188 VRVAEDHGRQKAQYL 202
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D++ VT+ QL LF GQVV R+C D ++ L + ++ +++ + +RA
Sbjct: 39 SLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAM-- 96
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
ML F PV + + +PT R+ + I+ N+DK + + F
Sbjct: 97 ---EMLNFTPVNGKSIRVMYSHRDPTL-------RKSGSANIFIKNLDKSIDNKALHDTF 146
Query: 376 ESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN 413
S G + ++ D + S FV++ ESA A++
Sbjct: 147 SSF-GNILSCKIATDSNGQSKGYGFVQYDNEESAQGAID 184
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D + +E+L LF G + C++ DP+ + R + F+ F+ E +RA +
Sbjct: 322 LYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMN 381
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 382 GKMIVSKPLYV 392
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 17/173 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L +F G V R+C D + L +A++ + + A+G RA
Sbjct: 47 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 106
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L +++ P R++ S+ +P R+ I+ N+D+++ + F
Sbjct: 107 LNYSLIKNRPCRIMWSQR-----DPAL-------RKTGQGNIFIKNLDEQIDNKALHDTF 154
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
+ G V ++ D H +++ FV + AE+A A+ N +G++L + V
Sbjct: 155 -AAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYV 206
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
+ + ++YV D+D VT+ QL +F GQVV R+C D ++ L + ++ +++ + A
Sbjct: 8 QFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAA 67
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA L T L P+R++ S R R+ I+ N+DK +
Sbjct: 68 RALDVLNFTPLNNKPIRIMYSH------------RDPSIRKSGMANIFIKNLDKGIDHKA 115
Query: 371 VKLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN 413
+ F S G + ++ D S FV+F E+A A++
Sbjct: 116 LHDTFSSF-GNILSCKVATDASGQSKGYGFVQFDSEEAAQNAID 158
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 213 FNNHNARNGNVNANAAVRRKKSFGQ----GKRRMNSRTSLAQR---EEIIRRTV------ 259
F N + + A A+ KK G+ GK + S L + E+ ++ TV
Sbjct: 235 FVNFESADDAAKAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGL 294
Query: 260 --YVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNL 316
Y+ ++D + +E+L LF G + C++ DP+ + R + F+ F+ E +RA +
Sbjct: 295 NLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEM 354
Query: 317 AGTMLGFYPVRV 328
G ML P+ V
Sbjct: 355 NGKMLISKPLYV 366
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ Q VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGQPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N ++ ++ F S G +R++ D + +R FV F E A A++
Sbjct: 192 NVYIKNFGDEMDDEKLRELF-SKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVD 249
>gi|290563184|ref|NP_001166854.1| sex-lethal isoform S [Bombyx mori]
gi|89885657|dbj|BAE86939.1| sex-lethal [Bombyx mori]
Length = 290
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 22/181 (12%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGA 310
+ R + V+ + Q +TE+ L A+FV G + CR+ D F F+ FT E + A
Sbjct: 13 DTARTNLIVNYLPQNITEKDLYAMFVTIGPIESCRVMKDFKTGYSYGFGFVNFTREEDAA 72
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA G Y +R K + A P +D +E +Y TN+ + +T
Sbjct: 73 RAIDTFNG-----YQLRNKRLKVSYA------RPSGDDIKET---NLYVTNLPRAITDDQ 118
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTR--IAFVEFVM---AESAIAALNCSGVVLGSLPIR 425
++ F G + + +L D + T +AFV + A+ AIAALN G+ P+
Sbjct: 119 LETIFGKY-GRIVQKHILRDKNSGTPRGVAFVRYDKREEAQEAIAALNNVIPEGGTEPLS 177
Query: 426 V 426
V
Sbjct: 178 V 178
>gi|356536386|ref|XP_003536719.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
Length = 597
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 11/181 (6%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAA 313
+RTV+ I + E + F G+V D R+ D NS +IEF D A
Sbjct: 222 QRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYD-VMSVPMA 280
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTF-----LPRTEDEREMCARTIYCTNIDKKVTQ 368
+ L+G L PV V PS+ V T L AR +Y N+ +T+
Sbjct: 281 IALSGQPLLGQPVMVKPSEAEKNLVQSTTSVANGLTGLIGPYSGGARKLYVGNLHVSITE 340
Query: 369 ADVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAALNCSG-VVLGSLPIRV 426
AD++ FE+ G+V ++L L + H FV+F E A A + +G + +G I+V
Sbjct: 341 ADIRRVFEAF-GQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKV 399
Query: 427 S 427
S
Sbjct: 400 S 400
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVE 401
P + ER+ RT++ I K + DV FF S G+V +RL+ D + S + ++E
Sbjct: 214 PEADPERDQ--RTVFAYQISLKADERDVYEFF-SRAGKVRDVRLIMDRNSRRSKGVGYIE 270
Query: 402 FVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
F S A+ SG L P+ V PS+
Sbjct: 271 FYDVMSVPMAIALSGQPLLGQPVMVKPSEA 300
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 20/179 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVLGSLPIRVSPSKT 431
+ S G + ++ D H S FV F E+A A+N +G++L + V K+
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML L + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML-------LNDRKVFV---GHFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|453087053|gb|EMF15094.1| splicing factor, CC1-like protein [Mycosphaerella populorum SO2202]
Length = 622
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 90/216 (41%), Gaps = 36/216 (16%)
Query: 231 RKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG 290
R+ S+ G +T +E RRTV+V + ++ +L F G VVD +I
Sbjct: 210 RRHSYRGGDGGNKRKTPEPTDDERDRRTVFVQQLAARLRSRELRDFFEQVGPVVDAQIVK 269
Query: 291 DPNSVLR--FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTED 348
D S ++EF DE E + A+ L G L P+ IA + TE
Sbjct: 270 DRVSGRSKGVGYVEFKDE-ESVQKAIGLTGQKLLGIPI--------IAQL-------TEA 313
Query: 349 EREMCART---------------IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH- 392
E+ ART +Y NI +T+AD+K FE GE+ +L + +
Sbjct: 314 EKNRQARTTEGTATQSNGVPFHRLYVGNIHFSITEADLKNVFEPF-GELEFAQLQKEENG 372
Query: 393 HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVS 427
S FV+F+ A AL +G L PIRV
Sbjct: 373 RSKGYGFVQFIDPAQAKEALEKMNGFELAGRPIRVG 408
>gi|326517609|dbj|BAK03723.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 990
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAE 308
A++ E +++ V +S++ +T E + LF CG+VVDC I A++E++ + E
Sbjct: 357 AEKAEALKKIVQISNLSPVLTVENIKQLFGYCGKVVDCTIT----ESKHIAYVEYS-KPE 411
Query: 309 GARAALNLAGTMLGFYPVRV-----LPSKTAIAPVN 339
A AAL L+ +G P+ V LP KT+IA N
Sbjct: 412 EATAALALSNVDVGGRPLNVEMAKSLPQKTSIANSN 447
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L +F G V R+C D + L +A++ + + A+G RA +
Sbjct: 58 SLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 117
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L +++ P R++ S+ R R+ I+ N+D K+ + F
Sbjct: 118 LNYSLIKNRPCRIMWSQ------------RDPALRKTGQGNIFIKNLDDKIDNKALHDTF 165
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + ++R AFV + E+A AA+ + +G++L
Sbjct: 166 -AAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLL 210
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T +++ ++D ++ + L F G ++ C++ D N R FA
Sbjct: 129 RIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFA 188
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + E A AA+ ML L K + + R E A+ I
Sbjct: 189 FVHY-ETGEAADAAIKSVNGML-------LNDKKVYVGHHISKKERQSKVEEQRAKFTNI 240
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAALN 413
+ N++ + TQ D++ F+ GE+ L +G+ S AFV + ++A A++
Sbjct: 241 FIKNLEPEFTQKDLEDMFKPF-GEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVD 296
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 240 RRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-F 298
RRM+ L + +YV +ID + +++L + F G + ++ D R F
Sbjct: 324 RRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGF 383
Query: 299 AFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
F+ F+ E RA + G M+G P+ V
Sbjct: 384 GFVCFSQPDEATRAVQEMNGKMIGTKPLYV 413
>gi|389644626|ref|XP_003719945.1| RNA splicing factor Pad-1 [Magnaporthe oryzae 70-15]
gi|351639714|gb|EHA47578.1| RNA splicing factor Pad-1 [Magnaporthe oryzae 70-15]
Length = 564
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 7/179 (3%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
+E RRTV+V + ++ +L F G V + +I D N ++EF E E
Sbjct: 170 DERDRRTVFVQQLAARLRTRELKEFFEKAGPVAEAQIVKDRVSNRSKGVGYVEFKTE-ES 228
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
AAL L G L PV V P++ T T+ + + +Y NI +T+
Sbjct: 229 VAAALQLTGQKLLGIPVIVQPTEAEKNRAVKTESTGTQ-QTSVPFHRLYVGNIHFSITEQ 287
Query: 370 DVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
D++ FE GE+ ++L D +R FV+F A A AL +G L PIRV
Sbjct: 288 DLQNVFEPF-GELEFVQLQKDDSGRSRGYGFVQFRDATQAREALEKMNGFDLAGRPIRV 345
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFV 403
TEDER+ RT++ + ++ ++K FFE G V +++ D + S + +VEF
Sbjct: 168 TEDERDR--RTVFVQQLAARLRTRELKEFFEK-AGPVAEAQIVKDRVSNRSKGVGYVEFK 224
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSK 430
ES AAL +G L +P+ V P++
Sbjct: 225 TEESVAAALQLTGQKLLGIPVIVQPTE 251
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L +F G V R+C D + L +A++ + + A+G RA +
Sbjct: 58 SLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 117
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L +++ P R++ S+ R R+ I+ N+D K+ + F
Sbjct: 118 LNYSLIKNRPCRIMWSQ------------RDPALRKTGQGNIFIKNLDDKIDNKALHDTF 165
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + ++R AFV + E+A AA+ + +G++L
Sbjct: 166 -AAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLL 210
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T +++ ++D ++ + L F G ++ C++ D N R FA
Sbjct: 129 RIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFA 188
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + E A AA+ ML L K + + R E A+ I
Sbjct: 189 FVHY-ETGEAADAAIKSVNGML-------LNDKKVYVGHHISKKERQSKVEEQRAKFTNI 240
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAALN 413
+ N++ + TQ D++ F+ GE+ L +G+ S AFV + ++A A++
Sbjct: 241 FIKNLEPEFTQKDLEDMFKPF-GEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVD 296
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 240 RRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-F 298
RRM+ L + +YV +ID + +++L + F G + ++ D R F
Sbjct: 324 RRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGF 383
Query: 299 AFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
F+ F+ E RA + G M+G P+ V
Sbjct: 384 GFVCFSQPDEATRAVQEMNGKMIGTKPLYV 413
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 20/179 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVLGSLPIRVSPSKT 431
+ S G + ++ D H S FV F E+A A+N +G++L + V K+
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML L + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML-------LNDRKVFV---GHFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV +LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQELF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 62 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 121
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T + P R++ S+ R R+ ++ N+D + + F
Sbjct: 122 LNYTSIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 169
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
S G + ++ D +S FV + AE+A A+ + +G++L
Sbjct: 170 -SQFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLL 214
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNL 316
VY+ +ID+ V++E+ LF G+VV I D N R F F+ F A+A L
Sbjct: 244 VYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAVEEL 302
>gi|389744897|gb|EIM86079.1| hypothetical protein STEHIDRAFT_98435 [Stereum hirsutum FP-91666
SS1]
Length = 1064
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 19/187 (10%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAAL 314
R T+YV++ ++V +E++ +F G + D R + RF +++FT + A+A+L
Sbjct: 723 RSTLYVTNFPERVDDEEVRKIFGKYGLIFDVRWPSKKFKATRRFCYVQFTS-PDAAKASL 781
Query: 315 NLAGTMLG-FYPVRVLPSKTAIAPVNPTFLPRTEDER---EMCARTIYCTNIDKKVTQAD 370
L G L P+ V S P + ER + AR +Y + + K ++D
Sbjct: 782 ELHGHELEPNLPLNVYISN-----------PERKKERTDADANAREVYVSGLSKFADKSD 830
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429
++ F++ G + +R+ D ++ AFVEF + A+ ALN + L + + V+ S
Sbjct: 831 LERVFKTY-GPIKEIRMTVDEQGRSKGFAFVEFEQEKDALNALNANNHELKARRMAVTMS 889
Query: 430 KTPVRPR 436
+ VR R
Sbjct: 890 DSRVRSR 896
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLA 317
TV+V+D+ T++ L ALF CG + D +I PN+ A +EF+ E E AAL
Sbjct: 651 TVFVADLPSNTTDDDLKALFKDCGSIRDIKITSLPNT--HVATVEFS-ERESVPAALTKD 707
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR-TIYCTNIDKKVTQADVKLFFE 376
+ V V + R T+Y TN ++V +V+ F
Sbjct: 708 KKRINGEEVAV----------------------HLAWRSTLYVTNFPERVDDEEVRKIF- 744
Query: 377 SVCGEVYRLRLLGDYHHST-RIAFVEFVMAESAIAALNCSGVVLG-SLPIRV 426
G ++ +R +T R +V+F ++A A+L G L +LP+ V
Sbjct: 745 GKYGLIFDVRWPSKKFKATRRFCYVQFTSPDAAKASLELHGHELEPNLPLNV 796
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
+ + ++YV D+DQ V + QL LF GQVV R+C D + L + ++ F++ + A
Sbjct: 31 QFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAA 90
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA L T L +R++ S R R+ I+ N+DK +
Sbjct: 91 RALDVLNFTPLNNRSIRIMYSH------------RDPSLRKSGTANIFIKNLDKAIDHKA 138
Query: 371 VKLFFESVCGEVYRLRLLGDYHH-STRIAFVEFVMAESAIAALN 413
+ F S G + ++ D S FV+F E+A A++
Sbjct: 139 LHDTFSSF-GLILSCKIATDASGLSKGYGFVQFDNEEAAQNAID 181
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D +++E+L +F G + C++ DP + R + F+ F+ E RA +
Sbjct: 319 LYLKNLDDTISDEKLKEMFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMN 378
Query: 318 GTMLGFYPVRV 328
G M P+ V
Sbjct: 379 GKMFAGKPLYV 389
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ Q VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F S G +R++ D + +R FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDDKLKDIF-SKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVD 249
>gi|405953553|gb|EKC21194.1| Squamous cell carcinoma antigen recognized by T-cells 3
[Crassostrea gigas]
Length = 970
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 32/193 (16%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL 314
RRT +VS++D + E+++ +F CG++ D R+ + +A++EF DE G AL
Sbjct: 771 RRTSFVSNLDYSIDEDRIGQIFAKCGEMTDIRLVKTIKGKSKGYAYVEFKDEL-GVLEAL 829
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK--------- 365
L T P+ P F+ + ED + A+ + T ++K
Sbjct: 830 KLDRT-----PIE----------GRPMFVSKCEDRSQKKAQFKFSTAMEKNKLFIKNLPF 874
Query: 366 --VTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFV-MAESAIAALNCSGVVLGS 421
A +++F E G V +R++ + + +A+VEF ++A A + G+ +G
Sbjct: 875 TCSKDALIQIFSEH--GPVKEVRMVTYRSGAPKGLAYVEFEDEQDAAKAVMKTDGLKIGD 932
Query: 422 LPIRVSPSKTPVR 434
I V+ S P R
Sbjct: 933 HEIEVAISNPPQR 945
>gi|270001539|gb|EEZ97986.1| hypothetical protein TcasGA2_TC000381 [Tribolium castaneum]
Length = 591
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 14/213 (6%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ +++M S+ + QR++ + VYV I ++ E+ + F+ G +
Sbjct: 111 VLMKQTLAHQQQQMASQRTQVQRQQALALMCRVYVGSISFELKEDTIRQSFLPFGPIKSI 170
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + E A+ AL + G M+G ++V+ + + P +
Sbjct: 171 NMSWDPVTQKHKGFAFVEY-EIPEAAQLALEQMNGVMIGGRNIKVV-GRPSNMPQAQAVI 228
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDYHHSTRIAFVEF 402
++E + R IY +I +T+ D+K FE+ +Y +L H F+E+
Sbjct: 229 DEIQEEAKQYNR-IYVASIHPDLTEDDIKSVFEAFGPIIYCKLAQGSSGHKHKGYGFIEY 287
Query: 403 VMAES---AIAALNCSGVVLGSLPIRVSPSKTP 432
A++ AIA++N LG +RV + TP
Sbjct: 288 ETAQAANEAIASMNL--FDLGGQYLRVGRAITP 318
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + ++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVACDKHGSRGFGFVHFETHEAAQQAINTMNGMLL 163
>gi|149063931|gb|EDM14201.1| poly(A) binding protein, nuclear 1, isoform CRA_c [Rattus
norvegicus]
Length = 194
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 50 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 106
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 107 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 137
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 52 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 110
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 111 KESVRTSLALDESLFRGRQIKVIPKRT 137
>gi|221058957|ref|XP_002260124.1| splicing factor [Plasmodium knowlesi strain H]
gi|193810197|emb|CAQ41391.1| splicing factor, putative [Plasmodium knowlesi strain H]
Length = 970
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 343 LPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFV 400
L + ++E + T+ N+D K + D+ FF V G+V ++ + D S +A+V
Sbjct: 581 LQKEQEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYV 640
Query: 401 EFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
EF E+ + AL+ +G +L + PI++ S+ + RA + H
Sbjct: 641 EFYTQEAVVKALSANGYMLKNRPIKIQSSQAE-KNRAAKAAKH 682
>gi|149063930|gb|EDM14200.1| poly(A) binding protein, nuclear 1, isoform CRA_b [Rattus
norvegicus]
Length = 184
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 50 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 106
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 107 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 137
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 52 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 110
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 111 KESVRTSLALDESLFRGRQIKVIPKRT 137
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
+ + ++YV D++ V + QL LF GQVV R+C D + L + ++ FT+ + A
Sbjct: 28 QFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAA 87
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA L T + +RV+ S R R+ I+ N+DK +
Sbjct: 88 RALDVLNFTPMNNKSIRVMYSH------------RDPSSRKSGTANIFIKNLDKTIDHKA 135
Query: 371 VKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN 413
+ F S G++ ++ D S FV+F +SA A++
Sbjct: 136 LHDTFSSF-GQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAID 178
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D +T+E+L +F G + +I DPN V R + F+ F+ E +RA +
Sbjct: 317 LYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMN 376
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 377 GKMIVSKPLYV 387
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 19/167 (11%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALNL 316
+YV D+ + V EE L F G V R+C D + LR+ ++ + A+ A L
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+++ P+RV+ S R D R I+ N+ V A ++ F
Sbjct: 183 NHSLVLDKPIRVMWSN------------RDPDARRSGVGNIFVKNLSSSVDNASLQELF- 229
Query: 377 SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNCSGVVLGSL 422
S G+V ++ + ++R FV+F ESA A+ G + GSL
Sbjct: 230 SKFGDVLSCKVAKNEDGTSRGYGFVQFTSQESADEAI---GNLNGSL 273
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 12/178 (6%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALNLA 317
+Y+ +D +TEE + F G +V +I P+ S L F F+ F + +A +
Sbjct: 301 LYMKHLDDDITEELVKLKFSQFGSIVSVKIMKRPDGSSLGFGFVSFQNPESAIKAQSTMN 360
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER--EMCAR----TIYCTNIDKKVTQADV 371
G +LG + V ++ +L R +E+ E+ R +Y NI +V +
Sbjct: 361 GMLLGSKALYV--ARAQKKEERKQYLQRLHEEKRNEIMTRCNESNVYIKNIHDEVDDDAL 418
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVS 427
+ F G + +++ D +R FV + E A +A+ N GV+ P+ V+
Sbjct: 419 RARFVEF-GNITSAKVMRDDKGISRGFGFVCYSTPEEAKSAVNNMRGVMFFGKPLYVA 475
>gi|195573327|ref|XP_002104645.1| GD18328 [Drosophila simulans]
gi|194200572|gb|EDX14148.1| GD18328 [Drosophila simulans]
Length = 824
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T+YV ++D V+E+ L ALF G V C+I +P + +AFIE+++ + A AL
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSN-YQAASTALTA 64
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
L + + + A +P N P+T+ I+ ++ ++ ++ F
Sbjct: 65 MNKRL--FLEKEIKVNWATSPGNQ---PKTDISSH---HHIFVGDLSPEIETETLREAFA 116
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
GE+ R++ D H S AFV FV AE+AI A+N G +GS IR + S
Sbjct: 117 PF-GEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRTNWSTR 173
Query: 432 PVRPRAPRLP 441
+ P PR P
Sbjct: 174 KLPP--PREP 181
>gi|195504962|ref|XP_002099304.1| GE10834 [Drosophila yakuba]
gi|194185405|gb|EDW99016.1| GE10834 [Drosophila yakuba]
Length = 464
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 20/195 (10%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
+E +T+YV ++D V+E+ L ALF G V C+I +P + +AFIE+++ + A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFGTMGPVKSCKIIREPGND-PYAFIEYSNY-QAAT 59
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AL L + + + A +P N P+T+ I+ ++ ++ +
Sbjct: 60 TALTAMNKRL--FLDKEIKVNWATSPGN---QPKTDISSH---HHIFVGDLSPEIETETL 111
Query: 372 KLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRV 426
+ F GE+ R++ D H S AFV FV AE+AI A+N G +GS IR
Sbjct: 112 REAFAPF-GEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRT 168
Query: 427 SPSKTPVRPRAPRLP 441
+ S + P PR P
Sbjct: 169 NWSTRKLPP--PREP 181
>gi|348577533|ref|XP_003474538.1| PREDICTED: polyadenylate-binding protein 2-like [Cavia porcellus]
Length = 306
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ +R E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEERMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 219 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 249
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E+ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 164 EERMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVIPKRT 249
>gi|327287898|ref|XP_003228665.1| PREDICTED: polyadenylate-binding protein 2-like [Anolis
carolinensis]
Length = 196
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 51 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYI 107
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT--FLPRT 346
EF+D+ E R +L L ++ ++V+P +T ++ T PRT
Sbjct: 108 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRT 153
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D + H A++EF
Sbjct: 53 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKYTGHPKGFAYIEFSD 111
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 112 KESVRTSLALDESLFRGRQIKVIPKRT 138
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL F G VV R+C D L + ++ FT+ + ARA
Sbjct: 21 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 80
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L L P+RV+ S R R A I+ N+D+ + + F
Sbjct: 81 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 128
Query: 376 ESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
S G + ++ D S FV++ ESA A+ +G++L + V P
Sbjct: 129 SSF-GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 182
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D +++E+L +F G V ++ DPN + + F+ F E A L+
Sbjct: 304 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 363
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 364 GKMIESKPLYV 374
>gi|303280195|ref|XP_003059390.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459226|gb|EEH56522.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 589
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAAL 314
+ RTVY +++ +TE+ LA F G V + G + RF F+EFTD+A A AA
Sbjct: 294 VARTVYAGNVNSSITEDMLADFFSVAGVVTYVKFAGSDFNPSRFGFVEFTDKAS-AEAAK 352
Query: 315 NLAGTMLGFYPVRV 328
L+GTML ++V
Sbjct: 353 ALSGTMLAEMTLKV 366
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
ART+Y N++ +T+ + FF SV G V ++ G + +R FVEF SA AA
Sbjct: 294 VARTVYAGNVNSSITEDMLADFF-SVAGVVTYVKFAGSDFNPSRFGFVEFTDKASAEAAK 352
Query: 413 NCSGVVLGSLPIRVSPSKTPV 433
SG +L + ++V S P+
Sbjct: 353 ALSGTMLAEMTLKVKHSNNPI 373
>gi|367034680|ref|XP_003666622.1| hypothetical protein MYCTH_2311474 [Myceliophthora thermophila ATCC
42464]
gi|347013895|gb|AEO61377.1| hypothetical protein MYCTH_2311474 [Myceliophthora thermophila ATCC
42464]
Length = 575
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 23/187 (12%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
+E RRTV+V + ++ +L F G V + +I D N ++EF +E E
Sbjct: 189 DERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNE-ES 247
Query: 310 ARAALNLAGTMLGFYPVRVLPS--------KTAIAPVNPTFLPRTEDEREMCARTIYCTN 361
AAL L G L PV V P+ + + + +P +P +Y N
Sbjct: 248 VAAALQLTGQKLLGIPVIVQPTEAEKNRQARNSESSGHPNSIP---------FHRLYVGN 298
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
I +T+ D++ FE GE+ ++L D +R FV+F A A AL +G L
Sbjct: 299 IHFSITETDLQNVFEPF-GELEFVQLQKDDSGRSRGYGFVQFRDASQAREALEKMNGFDL 357
Query: 420 GSLPIRV 426
PIRV
Sbjct: 358 AGRPIRV 364
>gi|194910009|ref|XP_001982056.1| GG12380 [Drosophila erecta]
gi|190656694|gb|EDV53926.1| GG12380 [Drosophila erecta]
Length = 464
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 20/195 (10%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
+E +T+YV ++D V+E+ L ALF G V C+I +P + +AFIE+++ + A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFGTMGPVKSCKIIREPGND-PYAFIEYSN-YQAAT 59
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AL L + + + A +P N P+T+ I+ ++ ++ +
Sbjct: 60 TALTAMNKRL--FLDKEIKVNWATSPGN---QPKTDISSH---HHIFVGDLSPEIETETL 111
Query: 372 KLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRV 426
+ F GE+ R++ D H S AFV FV AE+AI A+N G +GS IR
Sbjct: 112 REAFAPF-GEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRT 168
Query: 427 SPSKTPVRPRAPRLP 441
+ S + P PR P
Sbjct: 169 NWSTRKLPP--PREP 181
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL F G VV R+C D L + ++ FT+ + ARA
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L L P+RV+ S R R A I+ N+D+ + + F
Sbjct: 97 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144
Query: 376 ESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
S G + ++ D S FV++ ESA A+ +G++L + V P
Sbjct: 145 SSF-GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D +++E+L +F G V ++ DPN + + F+ F E A L+
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 380 GKMIESKPLYV 390
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ + P+R++ S+ +P+ R+ ++ N+DK + D K +
Sbjct: 77 MNFDTIKGRPIRIMWSQR-----DPSL-------RKSGVGNVFIKNLDKSI---DNKALY 121
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA-IAALNCSGVVL 419
+ S G + +++ D H S FV F E+A IA +G++L
Sbjct: 122 DTFSAFGNILSCKIVCDEHGSRGYGFVHFETEEAARIAIEKVNGMLL 168
>gi|385305500|gb|EIF49466.1| pub1p [Dekkera bruxellensis AWRI1499]
Length = 489
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 22/181 (12%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNS-VLRFAFIEFTDEAEGA 310
E+ + T+YV +ID V+E+ L LF G Q+ +I D N +AFIE+ D +
Sbjct: 153 ELSKTTLYVGNIDNSVSEDMLRDLFGSLGAQIQSIKILYDKNKRGFNYAFIEYEDHXKAE 212
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
A L GT+L YP+++ T+ RT+ R T++ ++ ++
Sbjct: 213 NALQALNGTVLANYPLKI------------TWAYRTQQSRSGENFTLFVGDLSPEIDDDS 260
Query: 371 VKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIR 425
+ F V + ++ D S FV F AE+ + +N G+ LG IR
Sbjct: 261 LAATFSKFPSFV-QANVMWDMKTGRSRGYGFVSFQNNQDAETVLQTMN--GMSLGGRSIR 317
Query: 426 V 426
+
Sbjct: 318 L 318
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
I ++YV D+ +V+E+ L +F G V + R+C D N+ L +A++ + + A+ RA
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T P+R + + +P+ R+ ++ N+DK + D K
Sbjct: 68 LDTLNNT-----PIRGKACRIMWSQRDPSL-------RKSGVGNVFIKNLDKGI---DHK 112
Query: 373 LFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
++ S G + +++ D +S++ FV + ESA A+ +G+++ + V P
Sbjct: 113 ALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGP 172
Query: 429 SKT 431
K+
Sbjct: 173 FKS 175
>gi|385302465|gb|EIF46595.1| polyadenylate-binding protein 2 [Dekkera bruxellensis AWRI1499]
Length = 234
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 349 EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHH----STRIAFVEFVM 404
+RE+ R++Y NID T AD+K + CGE+ R+ +L Y+H S A+VEF
Sbjct: 76 QREIDRRSVYVGNIDYSATTADLKKVLDD-CGEINRITIL--YNHYTGRSKGFAYVEFND 132
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPV 433
E A AA+ +G L S + + +T +
Sbjct: 133 VEGAKAAIELNGTELYSRALTIQQKRTNI 161
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGA 310
EI RR+VYV +ID T L + CG++ I + FA++EF D EGA
Sbjct: 78 EIDRRSVYVGNIDYSATTADLKKVLDDCGEINRITILYNHYTGRSKGFAYVEFND-VEGA 136
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAI 335
+AA+ L GT L + + +T I
Sbjct: 137 KAAIELNGTELYSRALTIQQKRTNI 161
>gi|340381668|ref|XP_003389343.1| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like [Amphimedon queenslandica]
Length = 402
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 23/233 (9%)
Query: 211 LIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTE 270
+ F ++ + A V K K++++S+ L EE T++VS++ E
Sbjct: 127 VFFTEESSSKTKCSTGATVTEIKPHAMSKKKIDSK-KLEVNEE---NTIFVSNLASDTDE 182
Query: 271 EQLAALFVGCGQVVDCRIC---GDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR 327
+QL LF CGQV D R+ G +A++EFT +E AL L T+L +
Sbjct: 183 DQLHKLFSQCGQVADVRLIKKFGGKFGTNVYAYVEFT-TSEPTVEALKLDHTVLNSRAIY 241
Query: 328 VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 387
V + N + ++ T++ TN+ +++ D++ F+ V +V +RL
Sbjct: 242 V-------SSCNADRQNKYNNK-----ATVFVTNVAHDLSERDLEDIFKEV-DQVKAVRL 288
Query: 388 LGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPSKTPVRPRAP 438
+ + ++ A++E+ SA AA+ + + I+V+ SK P P
Sbjct: 289 VRNKKGRSKGFAYIEYDTESSARAAVFQLNDREMAGKNIKVAISKPPASKELP 341
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
+YV D+ + V EE L +F G + R+C D ++ LR+ ++ + +A+ A A
Sbjct: 39 ALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEK 98
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L +++ P+RV+ S R D R ++ N++ V ++ F
Sbjct: 99 LNHSLILDKPIRVMWSN------------RDPDARRSGVGNVFVKNLNDLVDNVSLQELF 146
Query: 376 ESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
C G++ ++ + ++R FV+F + ESA A++
Sbjct: 147 ---CKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASI 183
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D+K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DIKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL F QVV R+C D N+ L + ++ +++ + +A
Sbjct: 42 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQK 101
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L + L +R+ T+ R R ++ N+DK V + F
Sbjct: 102 LNYSTLNGKMIRI------------TYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETF 149
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
S CG + ++ D+ +R FV+F +SA A+ +G VL I V P
Sbjct: 150 -SGCGTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGP 203
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D VT+E+L LF G + C++ DP+ + + F+ F+ +E +R +
Sbjct: 325 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 384
Query: 318 GTMLGFYPVRV 328
G M+G P+ V
Sbjct: 385 GKMVGGKPLYV 395
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL- 314
R +Y+ ++++ + + + F G +++C + D + R + F+ F D E ARAA+
Sbjct: 113 RKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHF-DTEEAARAAIE 171
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVK 372
+ G + V V+ F+PR + E+E + +Y N+ ++ T+ ++
Sbjct: 172 KVNGMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLGEEFTEQHLR 220
Query: 373 LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA-LNCSGVVLG 420
FE +L D S R FV + +SA+AA + G LG
Sbjct: 221 EMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLG 269
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + A+G RA
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERALEE 115
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 163
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D H +++ FV + +++A A+ + +G++L
Sbjct: 164 -AAFGNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLL 208
>gi|82595543|ref|XP_725893.1| splicing factor [Plasmodium yoelii yoelii 17XNL]
gi|23481068|gb|EAA17458.1| putative splicing factor [Plasmodium yoelii yoelii]
Length = 698
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN 413
T+ N+D K + D+ FF V G+V ++ + D S +A+VEF +S I AL+
Sbjct: 319 TVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQDSVIKALS 378
Query: 414 CSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
+G +L + PI+V S+ + RA + H
Sbjct: 379 VNGYMLKNRPIKVQSSQAE-KNRAAKATKH 407
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D VTE QL +F G V R+C D + L +A++ F + + RA
Sbjct: 25 SLYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDAERALDT 84
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T + R++ + R R+ A I+ N+DK V + F
Sbjct: 85 LNYTQIKGKACRIM------------WKHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTF 132
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
S G + ++ D H ++R FV+F AE A A++ +G++L + V P
Sbjct: 133 -SQFGNILSCKVSMDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFVGP 186
>gi|328715704|ref|XP_001946343.2| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 1
[Acyrthosiphon pisum]
Length = 419
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 13/162 (8%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
++V D+ ++ + L F G++ DCR+ DP ++ + F+ F +AE A +
Sbjct: 97 IFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSFLKKAEAESAIAAM 156
Query: 317 AGTMLGF------YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
G LG + R P+ + P ++ T+YC + +T
Sbjct: 157 NGQWLGSRSIRTNWATRKPPTLKTDSNTKPLTFDEVYNQSSPTNCTVYCGGLTSGLTDEL 216
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
V+ F G + +R+ D + AFV F ESA A+
Sbjct: 217 VQKTFAPF-GNIQEIRVFKDKGY----AFVRFATKESATHAI 253
>gi|291403571|ref|XP_002717950.1| PREDICTED: poly(A) binding protein, nuclear 1-like [Oryctolagus
cuniculus]
Length = 366
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ +R E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 222 SIEERMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 278
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 279 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 309
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E+ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 224 EERMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 282
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 283 KESVRTSLALDESLFRGRQIKVIPKRT 309
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +VTE L F G ++ R+C D + L +A++ F A+ R +
Sbjct: 111 SLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTD 170
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ ++ N++K + + F
Sbjct: 171 MNLYIIKGKPVRLMWSQ------------RDPSLRKSGIGNVFVKNLEKSINNKSLYDAF 218
Query: 376 ESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
S G + +++ D + S FV F ESA A+ +G++L L I V
Sbjct: 219 SSF-GNILSCKVITDDNGSKGYGFVHFEHRESAERAIQKMNGILLNDLKIFV 269
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 20/178 (11%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V+V ++++ + + L F G ++ C++ D N + F
Sbjct: 182 RLMWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDAFSSFGNILSCKVITDDNGSKGYGF 241
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F RA + G +L + V F R + E E+ A+T
Sbjct: 242 VHFEHRESAERAIQKMNGILLNDLKIFV-----------GHFKSRKDRESELGAQTREFT 290
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413
+Y N + + + + FE + + D S FV F E A A++
Sbjct: 291 NVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAID 348
>gi|395335144|gb|EJF67520.1| hypothetical protein DICSQDRAFT_164378 [Dichomitus squalens
LYAD-421 SS1]
Length = 395
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 30/197 (15%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
V+V D+ +V ++ LA F G + D R+ D NS + F+ F D+ + +A +
Sbjct: 79 VFVGDLSPEVNDDVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 138
Query: 317 AGTMLGFYPVRV-------------LPSKTAI-----APVN----PTFLPRTEDEREMCA 354
G LG +RV P +T + AP+N P +
Sbjct: 139 NGEWLGSRAIRVNWANQKTQGAPPAGPPRTGMGGGAPAPMNFQGGPLSYESVVQQTPAYN 198
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAE-SAIAALN 413
T+Y N+ TQAD+ F+S+ G + +R+ D AFV+ E +A+A +
Sbjct: 199 TTVYVGNLVPYATQADLIPLFQSI-GYLSEIRMQAD----RGFAFVKLDTHEHAAMAIVQ 253
Query: 414 CSGVVLGSLPIRVSPSK 430
G ++ PI+ S K
Sbjct: 254 LQGQMVHGRPIKCSWGK 270
>gi|357625522|gb|EHJ75940.1| hypothetical protein KGM_20346 [Danaus plexippus]
Length = 245
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
++V D+ ++ + L F G++ DCR+ DP ++ + F+ F ++E A +
Sbjct: 56 IFVGDLSPEIETQNLRDAFAPFGEISDCRVVRDPQTLKSKGYGFVSFLKKSEAESAITAM 115
Query: 317 AGTMLGFYPVRV-LPSKTAIAPVN-----PTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
G LG +R ++ AP N P ++ T+YC + +T+
Sbjct: 116 NGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSPTNCTVYCGGLTAGLTEEL 175
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
++ F+ G + +R+ D + AF+ F ESA A+
Sbjct: 176 MQKTFQPF-GTIQEIRVFKDKGY----AFIRFSTKESATHAI 212
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 13/195 (6%)
Query: 245 RTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEF 303
+T A+ EE VY+ ++D V E+ L F G++V I D N + + +AF+ F
Sbjct: 190 KTDRAKAEEKYT-NVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVNF 248
Query: 304 TDEAEGAR-AALNLAGTMLG---FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--I 357
D+ E AR AA + GT G Y R + F + E E+ M A+ I
Sbjct: 249 -DKPEDARWAAETMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHE-EQMMKAKVSNI 306
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-S 415
Y NI+ VT+ +++ F S CG + +L+ D ++ FV F E AI A+
Sbjct: 307 YVKNINVGVTEEELRKHF-SQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 416 GVVLGSLPIRVSPSK 430
G + P+ V+ ++
Sbjct: 366 GKMFHGKPLYVATAQ 380
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K+ +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKVLY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|356563290|ref|XP_003549897.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 402
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 36/220 (16%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-------VGCGQVVDC 286
+F G+RR ++ T++V D+ VT+ L F G V+D
Sbjct: 144 TFSAGERR---------HDDSPDHTIFVGDLAADVTDYLLQETFRARYPSAKGAKVVID- 193
Query: 287 RICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS-----KTAIAPVNPT 341
R+ G + F+ F DE+E RA + G + P+R+ P+ T P
Sbjct: 194 RLTG---RTKGYGFVRFGDESEQVRAMSEMQGVLCSTRPMRIGPASNKNPSTQSQPKASY 250
Query: 342 FLPR-TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFV 400
P+ ++E + TI+ N+D VT ++ F GE+ +++ R FV
Sbjct: 251 QNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQY-GELVHVKIPA----GKRCGFV 305
Query: 401 EFV---MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRA 437
+F AE A+ LN G +LG +R+S ++P +A
Sbjct: 306 QFADRSCAEEALRVLN--GTLLGGQNVRLSWGRSPSNKQA 343
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + ++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLL 163
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML + K + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
+YV D+ + V EE L +F G + R+C D ++ LR+ ++ + +A+ A A
Sbjct: 39 ALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEK 98
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L +++ P+RV+ S R D R ++ N++ V ++ F
Sbjct: 99 LNHSLILDKPIRVMWSN------------RDPDARRSGVGNVFVKNLNDLVDNVSLQELF 146
Query: 376 ESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
C G++ ++ + ++R FV+F + ESA A++
Sbjct: 147 ---CKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASI 183
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + ++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLL 163
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML + K + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 25/189 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D + L +A++ F A+ RA
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R A I+ N+DK + D K +
Sbjct: 79 MNFDMMYGKPIRIMWSQ------------RDPSMRRSGAGNIFIKNLDKSI---DNKAIY 123
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPSKT 431
+ S+ G + ++ D +++ FV F ESA A+ +G++L + V
Sbjct: 124 DTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVG---- 179
Query: 432 PVRPRAPRL 440
+PR RL
Sbjct: 180 KFQPRTARL 188
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T +++ ++D+Q+ + L FV G V+ C++ D + +
Sbjct: 117 RIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFVAFGNVLSCKVATDEQGRSKGYG 176
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE-----DEREMCA 354
F+ + + AE A A+ ML + K + P +PR E DE +
Sbjct: 177 FVHY-ETAEAAETAIKAVNGML------LNDKKVYVGP----HIPRKERQSKLDEMKAQF 225
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413
+Y N+D +VTQ + + F + + D S FV + E A AA++
Sbjct: 226 TNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVD 284
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE + +F G V R+C D + L +A++ + + A+G RA
Sbjct: 46 SLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADGERALEQ 105
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L +++ P R++ S+ R R+ I+ N+D+++ D K
Sbjct: 106 LNYSLIKGRPCRIMWSQ------------RDPALRKTGQGNIFIKNLDEQI---DNKALH 150
Query: 376 ESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVLGSLPIRVSP 428
++ G V ++ D ++ FV + AE+A A+ +G++L + V P
Sbjct: 151 DTFVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGP 207
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 249 AQREEIIRRT----------------VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP 292
A+REE +RR+ +YV +++ V +++L A F G + C++ D
Sbjct: 305 AEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDE 364
Query: 293 NSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
+ F F+ F+ E +A + M+G P+ V
Sbjct: 365 KGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYV 401
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + ++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLL 163
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML + K + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|393218535|gb|EJD04023.1| hypothetical protein FOMMEDRAFT_133373 [Fomitiporia mediterranea
MF3/22]
Length = 422
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
V+V D+ +V + LA F G + D R+ D NS + F+ F D+ + +A +
Sbjct: 106 VFVGDLSPEVNDAVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 165
Query: 317 AGTMLGFYPVRV-----------LPSKT----AIAPVN----PTFLPRTEDEREMCARTI 357
G LG +RV P T A AP+N P + T+
Sbjct: 166 NGEWLGSRAIRVNWANQKTQGAPAPRPTGAGGAPAPINFQGGPLSYETVVQQTPAYNTTV 225
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAE-SAIAALNCSG 416
Y N+ TQAD+ F+S+ G + +R+ D AFV+ E +A+A + G
Sbjct: 226 YVGNLVPYCTQADLIPLFQSI-GYLSEIRMQAD----RGFAFVKLDTHENAAMAIVQLQG 280
Query: 417 VVLGSLPIRVSPSK 430
++ PI+ S K
Sbjct: 281 QMVHGRPIKCSWGK 294
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---SVLRFAFIEFTDEAEGARA 312
R +YV ++ +VTE L +F G V +I D N L + F+E+ D A
Sbjct: 12 RAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMRAAETA 71
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L G + +R VN + T E ++ ++ +V A +
Sbjct: 72 LQTLNGRKIFDTEIR----------VNWAYQGSTAKEDTSGHFHVFVGDLSPEVNDAVLA 121
Query: 373 LFFESVCGEVYRLRLLGDYHHSTR-----IAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
F S G + R++ D + +AF + AE AIA +N G LGS IRV
Sbjct: 122 KAF-SAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMN--GEWLGSRAIRV 177
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + ++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLL 163
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML + K + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|1279563|emb|CAA61298.1| nuM1 [Medicago sativa]
Length = 635
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 13/184 (7%)
Query: 238 GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR 297
GK+ N T E +T++V ++ V + F GC +VVD R+ D + V +
Sbjct: 359 GKKAPN--TPATPNETSGSKTLFVGNLSFDVKRSDIENFFQGCVEVVDVRLASDGDGVFK 416
Query: 298 -FAFIEFTDEAEGARAALNLAGTMLGFYPVR--VLPSKTAIAPVNPTFLPRTEDEREMCA 354
F +EF AE A++AL + G L +R + + A P N + R
Sbjct: 417 GFGHVEFA-TAEAAQSALEMNGQELLHRALRLDLARERGAFTPNNNSNYSAQSGGRGQS- 474
Query: 355 RTIYCTNIDKKVTQADVKL----FFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESA 408
+T++ DK + + +++ F CGE R+ + DY +S A+++F ++S
Sbjct: 475 QTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDYESGYSKGFAYMDFKDSDSF 534
Query: 409 IAAL 412
AL
Sbjct: 535 SKAL 538
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D S L +A+I F A+ RA
Sbjct: 12 SLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ I+ N+D + D K +
Sbjct: 72 MNFEVIKGRPIRIMWSQ------------RDPGLRKSGVGNIFIKNLDDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A++ +G++L
Sbjct: 117 DTFSTFGNILSCKVVCDEHGSRGFGFVHFETREAASQAISTMNGMLL 163
>gi|198422099|ref|XP_002129220.1| PREDICTED: similar to RNA binding motif protein 39 [Ciona
intestinalis]
Length = 465
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAA 411
ARTI+C + +++ D++ FF SV G+V ++L+ D H S IA+VEF ES A
Sbjct: 103 ARTIFCMQLAQRIRVRDLEEFFSSV-GKVREVKLIQDKHSKRSKGIAYVEFKDLESIPLA 161
Query: 412 LNCSGVVLGSLPIRVSPSKT 431
L SG L +PI V P+++
Sbjct: 162 LGLSGQKLLGVPIVVQPTQS 181
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 8/174 (4%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAAL 314
RT++ + Q++ L F G+V + ++ D +S A++EF D E AL
Sbjct: 104 RTIFCMQLAQRIRVRDLEEFFSSVGKVREVKLIQDKHSKRSKGIAYVEFKD-LESIPLAL 162
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
L+G L P+ V P+++ + L + + + +Y ++ + +T+ +K
Sbjct: 163 GLSGQKLLGVPIVVQPTQSEKNKIAAAQL--SLQKAALGPTKLYVGSLHENITEEMIKGI 220
Query: 375 FESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
F S G V +++++ D ++R F+ F AE A AL+ +G + PI++
Sbjct: 221 F-SPFGRVEQVQIIKDDAGASRGYGFITFAEAECAKRALDQLNGFEIAGKPIKL 273
>gi|170084123|ref|XP_001873285.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650837|gb|EDR15077.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 422
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 36/203 (17%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
V+V D+ +V +E LA F G + D R+ D NS + F+ F D+ + +A +
Sbjct: 104 VFVGDLSPEVNDEVLAKAFSAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 163
Query: 317 AGTMLGFYPVRV------------------------LPSKTAIAPVN----PTFLPRTED 348
G LG +RV + + +A AP+N P
Sbjct: 164 NGEWLGSRAIRVNWANQKTQGAPPTTTASSPRPGGAVTTGSAPAPINFQGGPLSYESVVQ 223
Query: 349 EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAE-S 407
+ T+Y N+ TQAD+ F+S+ G + +R+ D AFV+ E +
Sbjct: 224 QTPAYNSTVYVGNLVPYCTQADLIPLFQSI-GYLSEIRMQAD----RGFAFVKLDTHEHA 278
Query: 408 AIAALNCSGVVLGSLPIRVSPSK 430
A+A + G ++ PI+ S K
Sbjct: 279 AMAIVQLQGQMVHGRPIKCSWGK 301
>gi|328876647|gb|EGG25010.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 748
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 22/178 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALF--VGCGQVVDCRICGDPNSV--LRFAFIEFTDEAEGARAA 313
++YV D+ Q+V E LA LF VG V +C D ++ L +A++ F + + RA
Sbjct: 131 SLYVGDLSQEVNELILAELFSKVGRTAVASIHVCRDSATLRSLGYAYVNFYNSVDAERAL 190
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L +++ P R++ S R +R+ I+ N++K V A L
Sbjct: 191 DTLNYSLILGRPCRIMWSH------------RDPTKRKSNVGNIFVKNLEKNVDNA---L 235
Query: 374 FFE--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA-IAALNCSGVVLGSLPIRVSP 428
F+ S G + ++ + S +V F ES+ A L +G +L PI V P
Sbjct: 236 LFDTFSTYGNILSCKIEYEKGISKGYGYVHFENQESSEQAILKVNGTILLGKPIIVEP 293
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAG 318
++V ++++ V L F G ++ C+I + + ++ F ++ +A L + G
Sbjct: 222 IFVKNLEKNVDNALLFDTFSTYGNILSCKIEYEKGISKGYGYVHFENQESSEQAILKVNG 281
Query: 319 TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDERE-MCARTIYCTNIDKKVTQADVKLFFES 377
T+L P+ V P F+ + E +E ++ NID+ VT ++ S
Sbjct: 282 TILLGKPIIVEP-----------FVSKVERFKEKKNENKLFIKNIDENVTSEMLQQEL-S 329
Query: 378 VCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNCSGVV 418
GE+ + D + +AFVEF +E A A L + +
Sbjct: 330 RFGEIESCNIRTDPTGKPKGLAFVEFKTSEDAQALLESTEAI 371
>gi|346327401|gb|EGX96997.1| RNA splicing factor (Pad-1), putative [Cordyceps militaris CM01]
Length = 545
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 84/196 (42%), Gaps = 12/196 (6%)
Query: 238 GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCG-----QVVDCRICGDP 292
G R T + +E RRTV+V + ++ +L A F G Q+V RI G
Sbjct: 140 GPRDKQDATPVLNEDERDRRTVFVQQLAARLRSRELKAFFEKVGPVTEAQIVKDRISGRS 199
Query: 293 NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREM 352
V ++EF +E + AL L G L PV V ++ T P +
Sbjct: 200 KGV---GYVEFKNE-DSVAPALQLTGQKLLGIPVIVQVTEAEKNRQARTTEPGGSHPNHV 255
Query: 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAA 411
+Y NI VT+ D++ F+ GE+ ++L D + +R FV+F A A A
Sbjct: 256 PFHRLYVGNIHFNVTEQDLQAVFDPF-GELEFVQLQKDETNRSRGYGFVQFRDAGQAREA 314
Query: 412 LN-CSGVVLGSLPIRV 426
L +G L PIRV
Sbjct: 315 LEKMNGFDLAGRPIRV 330
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + ++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLL 163
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML + K + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV +LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQELF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + ++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLL 163
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML + K + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 25/189 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D + L +A++ F A+ RA
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R A I+ N+DK + D K +
Sbjct: 79 MNFDMMYGKPIRIMWSQ------------RDPSMRRSGAGNIFIKNLDKSI---DNKAIY 123
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPSKT 431
+ S+ G + ++ D +++ FV F ESA A+ +G++L + V
Sbjct: 124 DTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVG---- 179
Query: 432 PVRPRAPRL 440
+PR RL
Sbjct: 180 KFQPRTARL 188
>gi|302795494|ref|XP_002979510.1| hypothetical protein SELMODRAFT_111082 [Selaginella moellendorffii]
gi|300152758|gb|EFJ19399.1| hypothetical protein SELMODRAFT_111082 [Selaginella moellendorffii]
Length = 432
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 96/245 (39%), Gaps = 57/245 (23%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCR 287
SFG G++RM+ L +++V D+ VT+ L F V +VV
Sbjct: 107 SFGMGEKRMDGGPEL---------SIFVGDLAPDVTDYMLHETFRTRFPSVRGAKVVIDA 157
Query: 288 ICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR-------------------- 327
+ G + F+ F DE E ARA + G P+R
Sbjct: 158 VTGRSKG---YGFVRFADENERARAMSEMNGVYCSSRPMRISAATPKKAMAAGLTTVTAA 214
Query: 328 -VLPSKTAIAPVNPT--------FLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESV 378
++P T +P+ P LP D TI+ +D +T+ +VK F +
Sbjct: 215 TIVPQPTIASPITPPPSLSIQSQVLPPDSDPTNT---TIFVGGLDLNITEEEVKQTFSHI 271
Query: 379 CGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPR- 436
GE+ +++ AFV++ SA AL G V+G IR+S ++P +
Sbjct: 272 -GELVSVKI----PPGKGCAFVQYAQRNSAEDALQRLHGTVIGQQAIRLSWGRSPTSTKQ 326
Query: 437 APRLP 441
AP P
Sbjct: 327 APTSP 331
>gi|9506945|ref|NP_062275.1| polyadenylate-binding protein 2 [Mus musculus]
gi|46396417|sp|Q8CCS6.3|PABP2_MOUSE RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName: Full=Nuclear
poly(A)-binding protein 1; AltName: Full=Poly(A)-binding
protein II; Short=PABII; AltName:
Full=Polyadenylate-binding nuclear protein 1
gi|2351846|gb|AAC00210.1| poly(A) binding protein II [Mus musculus]
gi|33585929|gb|AAH55866.1| Poly(A) binding protein, nuclear 1 [Mus musculus]
gi|148704376|gb|EDL36323.1| poly(A) binding protein, nuclear 1, isoform CRA_b [Mus musculus]
Length = 302
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 158 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 214
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 215 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 245
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 160 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 218
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 219 KESVRTSLALDESLFRGRQIKVIPKRT 245
>gi|449487626|ref|XP_004157720.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101203535
[Cucumis sativus]
Length = 936
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
+ ++RT+ VS++ +T EQL LF CG VV+C I FA+IE++ + E A A
Sbjct: 334 DALKRTLQVSNLSPLLTVEQLKQLFXFCGTVVECTIT----DSKHFAYIEYS-KPEEATA 388
Query: 313 ALNLAGTMLGFYPVRV-----LPSKTAIAPVNPTF 342
AL L +G P+ V LP K A A NP+
Sbjct: 389 ALALNNMDVGGRPLNVEMAKSLPQKPAAA--NPSL 421
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 25/179 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEF--TDEAEGARAA 313
++YV D+ VTE L +F G V R+C D L +A++ + +AE A +
Sbjct: 32 SLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQDAEAALES 91
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
LN + ++ P++ + +PT R+ A I+ N+D+ + D K
Sbjct: 92 LN-------YIDIKGHPTRIMWSNKDPTL-------RKSGAGNIFVKNLDRSI---DTKA 134
Query: 374 FFESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F+++ G + ++ D + ++ FV + ESA A+ +G+V+G + VSP
Sbjct: 135 FYDTFSHFGPILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVSP 193
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 85/195 (43%), Gaps = 23/195 (11%)
Query: 244 SRTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-F 298
+R + ++ +R++ ++V ++D+ + + F G ++ C++ D N V + +
Sbjct: 102 TRIMWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTFSHFGPILSCKVAMDENGVSKGY 161
Query: 299 AFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE-DEREMCART- 356
F+ + E A + G ++G V V P F+ + + D + T
Sbjct: 162 GFVHYDTEESAKEAIEKVNGMVIGGKKVEVSP-----------FIKKQDRDPASVDVFTN 210
Query: 357 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALN 413
+Y N + +K F + GE+ + + D + AFV F MA+ A+ ALN
Sbjct: 211 LYVRNFPVSWDEEALKQFLDKY-GEITSMMIKED-GKGRKFAFVNFAEPEMAKEAVEALN 268
Query: 414 CSGVVLGSLPIRVSP 428
+ + GS P+ V P
Sbjct: 269 GTKLEEGSEPLLVCP 283
>gi|325183868|emb|CCA18326.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325183943|emb|CCA18401.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 429
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 25/222 (11%)
Query: 217 NARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAAL 276
N NG + N R + ++G G RR+++ + +++V D+ +V++E L +
Sbjct: 65 NTFNGQIVPNTIHRFRLNWGAGGRRIDT---------VEDHSIFVGDLAPEVSDELLLST 115
Query: 277 F-VGCGQVVDCRICGDPNSVL--RFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
F V ++ DP + + F F+ F D+ E +A + G P+RV +
Sbjct: 116 FSTRFSSVRGAKVVIDPVTRMPKGFGFVRFGDKGEADQALQTMNGVYCSSRPMRVSVATD 175
Query: 334 AI-------APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386
P++ T + E E T++ +D T+ D++ F V GE+ ++
Sbjct: 176 RTKTRGIMPPPISYTVVGTGNTEEEGANTTVFIGGLDPSTTEDDLRARF-GVIGEIMSVK 234
Query: 387 LLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
+ FV++V ++A A+N +G ++ + +R +
Sbjct: 235 V----PPGRGCGFVQYVTKDAADVAINQMNGALINGVKVRCA 272
>gi|326503120|dbj|BAJ99185.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 724
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 23/193 (11%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC-GDPNSVLRFAFIEFTDEAEGARAALN 315
+T++V ++ V +++ F G+V D R D S FA +EF E A+ A
Sbjct: 465 KTLFVGNLSYNVENDEVKQFFGEAGEVSDIRFATADDGSFKGFAHVEFA-TTEAAQKAYE 523
Query: 316 LAGTMLGFYPVRV--LPSKTAIAPV----NPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
L G L PVR+ + AI P N +F ++ + T + D + +
Sbjct: 524 LNGHDLSGRPVRLDFARERGAITPGSGRDNSSF------KKSGQSNTAFVRGFDSSLGED 577
Query: 370 DVKLFFE---SVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESAIAALNCSGVVLGSLPI 424
+++ + S CG + R+ + DY T IA+VEF S AL +G +G +
Sbjct: 578 EIRSSLQEHFSSCGAIGRVSIPKDYETGTSKGIAYVEFTDGNSLPKALELNGSNIGEFSL 637
Query: 425 RVSPSKTPVRPRA 437
V +K PRA
Sbjct: 638 FVDEAK----PRA 646
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L +F G V R+C D + L +A++ + + A+G RA
Sbjct: 43 SLYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 102
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L + + P R++ S+ R R+ I+ N+D+++ + F
Sbjct: 103 LNYSSIKNRPCRIMWSQ------------RDPALRKTGQGNIFIKNLDEQIDNKALHDTF 150
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
+ G V ++ D H +++ FV + AE+A A+ + +G++L + V P
Sbjct: 151 -AAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGP 204
>gi|201860272|ref|NP_001128480.1| polyadenylate-binding protein 2 [Rattus norvegicus]
gi|149063929|gb|EDM14199.1| poly(A) binding protein, nuclear 1, isoform CRA_a [Rattus
norvegicus]
Length = 302
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 158 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 214
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 215 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 245
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 160 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 218
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 219 KESVRTSLALDESLFRGRQIKVIPKRT 245
>gi|357610697|gb|EHJ67099.1| TIA-1-related RNA binding protein [Danaus plexippus]
Length = 388
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 24/192 (12%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
+E +T+YV ++D VTEE L ALF G+V C+I +P + +AF+EFT+ A A
Sbjct: 3 DESHPKTLYVGNLDASVTEEFLCALFGQIGEVKGCKIIREPGND-PYAFLEFTNHASAAT 61
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
A + + ++V A +P N P+T+ I+ ++ ++ +
Sbjct: 62 ALAAMNRRVFLEKEMKV---NWATSPGN---QPKTDTSNH---HHIFVGDLSPEIETHIL 112
Query: 372 KLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRV 426
+ F GE+ R++ D S AFV FV AE+AI A+N G LGS IR
Sbjct: 113 REAFAPF-GEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN--GQWLGSRSIRT 169
Query: 427 S------PSKTP 432
+ P+K P
Sbjct: 170 NWSTRKPPTKGP 181
>gi|349942059|dbj|GAA29907.1| ELAV like protein 2/3/4 [Clonorchis sinensis]
Length = 645
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 28/192 (14%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAA 313
+ + ++ + +++E++ ALF G+V C++ + S L +AF++F D + +A
Sbjct: 119 KTNLIINYLPPNMSQEEVRALFSSIGEVESCKLVREKTSGESLGYAFVKFYDPLDAGKAI 178
Query: 314 LNLAGTMLGFYPVRVL---PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
L G L V+V PS AI N +Y + +K+TQ +
Sbjct: 179 KTLNGLRLQNKTVKVSLARPSSEAIKGAN-----------------LYICGLPRKMTQPE 221
Query: 371 VKLFFESVCGEVYRLRLLGDYHH--STRIAFVEF---VMAESAIAALNCSGVVLGSLPIR 425
++ F S CG + R+L D S +AF+ + AE+AI LN S PI
Sbjct: 222 LEKLF-SACGHIITARILYDTKTGLSRGVAFIRYDQRTEAEAAIRKLNGYLPPGASEPIT 280
Query: 426 VSPSKTPVRPRA 437
V + +P RA
Sbjct: 281 VKFANSPSSNRA 292
>gi|320580160|gb|EFW94383.1| Splicing factor [Ogataea parapolymorpha DL-1]
Length = 295
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 257 RTVYVSDID-QQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-----FAFIEFTDEAEGA 310
R VYVSD+D +V E++L+ +F G + RI + + FAFI F ++
Sbjct: 116 RQVYVSDLDFYKVDEDKLSEIFSKYGDIEMIRIPVRRDEKSKKLNNGFAFISFRSSSDAV 175
Query: 311 RAALNLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367
++ L L G +L P+++ P K ++ + R ARTI N+D K+
Sbjct: 176 KS-LELDGKLLAGRPMKIELATPKKKKVSVLGTGKFDR--------ARTISVLNVDDKIN 226
Query: 368 QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF-VMAESAIAALNCSGVVLGSLPIRV 426
+K FE + G V ++ L A +EF + S +A +G +G +R+
Sbjct: 227 TETLKAIFEEI-GPVTQIEL----QPENNAALIEFETVRSSGMADFKFNGRKIGDTTVRI 281
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL-NL 316
+Y+ ++++ + + + F G +++C + D + R + F+ F D E ARAA+ +
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHF-DSEEAARAAIEKV 166
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVKLF 374
G + V V+ F+PR + E+E + +Y N+ ++ T+ ++
Sbjct: 167 NGMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREM 215
Query: 375 FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA-LNCSGVVLG 420
FE +L + S R FV F +SA+AA + G LG
Sbjct: 216 FEPYGRITSHKLMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLG 262
>gi|358332953|dbj|GAA51534.1| squamous cell carcinoma antigen recognized by T-cells 3 [Clonorchis
sinensis]
Length = 898
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
RTV+VS++D TE+ L F CG++ R+ D + +A++EF ++A A AL
Sbjct: 626 RTVFVSNLDYSTTEDDLRRTFEECGKLSSVRLVRDYAGRSKGYAYVEF-EQASAADVALK 684
Query: 316 LAGTMLGFYPV-RVLPS-KTAIAPVNPTFLPRTEDER-----------EMCARTIYCTNI 362
+G PS + P F+ R + R ++ ++ N+
Sbjct: 685 KDRQPIGPSAASEATPSTDDTMTIARPMFVSRCDPNRSKSSGFQYSAGKLEPEKLFVRNL 744
Query: 363 DKKVT-QADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNCS-GVVL 419
DK+VT A +LF E G V +R+ + + + A+VEF A+ A AL + G+++
Sbjct: 745 DKRVTAHALEQLFGEH--GTVVSVRIATYRNGAPKGHAYVEFANADQASRALVATDGLLV 802
Query: 420 GSLPIRVSPSKTPVR 434
GS I V+ S PVR
Sbjct: 803 GSKNIAVAISNPPVR 817
>gi|6456838|emb|CAA04179.2| Sex-lethal orthologous protein [Megaselia scalaris]
Length = 307
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 243 NSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAF 300
NS SL + V+ + Q + + +L +LF G + CRI D + + F
Sbjct: 50 NSTNSLNSGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGF 109
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
++F EA+ RA NL G VR K + A P E R+ +Y T
Sbjct: 110 VDFGSEADALRAINNLNGIT-----VRNKRIKVSFA------RPGGEQLRDT---NLYVT 155
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHST--RIAFVEFVM---AESAIAALNCS 415
N+ + +T ++ F G++ + +L D H T +AF+ F A+ AI+ALN
Sbjct: 156 NLSRSITDEQLETIFGKY-GQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNV 214
Query: 416 GVVLGSLPIRVSPSKTPVRPR-----APRLPMH 443
G+ P+ V ++ + + AP P H
Sbjct: 215 IPEGGTQPLTVRVAEEHGKSKGHVYMAPNQPPH 247
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 20/179 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVLGSLPIRVSPSKT 431
+ S G + ++ D H S FV F E+A A+N +G++L + V K+
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML L + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML-------LNDRKVFV---GHFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|449433175|ref|XP_004134373.1| PREDICTED: uncharacterized protein LOC101203535 [Cucumis sativus]
Length = 936
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
+ ++RT+ VS++ +T EQL LF CG VV+C I FA+IE++ + E A A
Sbjct: 334 DALKRTLQVSNLSPLLTVEQLKQLFSFCGTVVECTIT----DSKHFAYIEYS-KPEEATA 388
Query: 313 ALNLAGTMLGFYPVRV-----LPSKTAIAPVNPTF 342
AL L +G P+ V LP K A A NP+
Sbjct: 389 ALALNNMDVGGRPLNVEMAKSLPQKPAAA--NPSL 421
>gi|242074396|ref|XP_002447134.1| hypothetical protein SORBIDRAFT_06g029180 [Sorghum bicolor]
gi|241938317|gb|EES11462.1| hypothetical protein SORBIDRAFT_06g029180 [Sorghum bicolor]
Length = 440
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLR-- 297
R+N ++ +R++ T++V D+ VT+ L F V V ++ D ++
Sbjct: 166 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKG 225
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP--SKTAIAPVNPTFLPRT---EDEREM 352
+ F++F D E ARA + G P+R+ P S+ V +P + + E +
Sbjct: 226 YGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAASRKNTGGVVQERVPNSQGAQSENDP 285
Query: 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA-IAA 411
TI+ +D VT+ +K F S GEV +++ R FV+FV SA A
Sbjct: 286 NNTTIFVGGLDPNVTEDTLKQVF-SPYGEVVHVKI----PVGKRCGFVQFVTRPSAEQAL 340
Query: 412 LNCSGVVLGSLPIRVS 427
L G ++G+ +R+S
Sbjct: 341 LMLQGALIGAQNVRLS 356
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 228 AVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCR 287
A RK + G + R+ + + T++V +D VTE+ L +F G+VV +
Sbjct: 259 AASRKNTGGVVQERVPNSQGAQSENDPNNTTIFVGGLDPNVTEDTLKQVFSPYGEVVHVK 318
Query: 288 I-CGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
I G R F++F +A L L G ++G VR+
Sbjct: 319 IPVGK-----RCGFVQFVTRPSAEQALLMLQGALIGAQNVRL 355
>gi|384491350|gb|EIE82546.1| hypothetical protein RO3G_07251 [Rhizopus delemar RA 99-880]
Length = 348
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG----DPNSVLRFAFIEFTDEAEGARAA 313
T+YV ++DQ+VT+ L +F GQVV +I + + + F+EF D +A
Sbjct: 19 TIYVGNLDQRVTDTMLNEIFTTVGQVVSVKIISVRKHNNFGAVNYGFVEFADPRVAEQAI 78
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER---EMCARTIYCTNIDKKVTQAD 370
++ G + Y +R ++ + A +NP ED + + D+K+ QA
Sbjct: 79 QDMNGRKIFNYEIRANWAQPS-ANINPPLQMTKEDTTNHFHVFVGDLAAEINDEKLAQA- 136
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 425
F V L G +AF + AE AIA +N G LG+ PIR
Sbjct: 137 FSEFGTMSEAHVMWDPLSGKSRGFGFVAFRDKTDAERAIATMN--GEWLGTRPIR 189
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 14/190 (7%)
Query: 232 KKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD 291
+ ++ Q +N + + + V+V D+ ++ +E+LA F G + + + D
Sbjct: 92 RANWAQPSANINPPLQMTKEDTTNHFHVFVGDLAAEINDEKLAQAFSEFGTMSEAHVMWD 151
Query: 292 PNSVLR--FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE 349
P S F F+ F D+ + RA + G LG P+R + P P +
Sbjct: 152 PLSGKSRGFGFVAFRDKTDAERAIATMNGEWLGTRPIRCNWATQKGQTAMPAPQPGQQLP 211
Query: 350 REMCAR-------TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF 402
E+ + +IY NI V+Q D+ F+ G V ++ D AFV+
Sbjct: 212 YEVVVQQTPAYVTSIYVGNIPLNVSQNDLVQPFQRF-GYVQEVKFQAD----RGFAFVKM 266
Query: 403 VMAESAIAAL 412
E+A A+
Sbjct: 267 DTHENAANAI 276
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 19/160 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413
+ S G + ++ D H S FV F E+A A+N
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAIN 156
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML + K + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
>gi|388496342|gb|AFK36237.1| unknown [Medicago truncatula]
Length = 202
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 6/166 (3%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAA 313
+RTV+ + + TE + F G+V D R+ D NS +IEF D A A
Sbjct: 38 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD-AMSVPMA 96
Query: 314 LNLAGTMLGFYPVRVLPSKTA--IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
+ L+G +L PV V PS+ + N + R +Y N+ +T+A++
Sbjct: 97 IALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANL 156
Query: 372 KLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSG 416
+ FE EV +L L + H FV+F E A AA + +G
Sbjct: 157 REIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNG 202
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVE 401
P + ER+ RT++ + K T+ DV FF S G+V +RL+ D + S + ++E
Sbjct: 30 PEADPERDQ--RTVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVGYIE 86
Query: 402 FVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
F A S A+ SG +L P+ V PS+
Sbjct: 87 FYDAMSVPMAIALSGQLLLGQPVMVKPSEA 116
>gi|357454295|ref|XP_003597428.1| RNA-binding protein [Medicago truncatula]
gi|355486476|gb|AES67679.1| RNA-binding protein [Medicago truncatula]
Length = 428
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 53/228 (23%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDP 292
SFG G+RR ++ +++V D+ VT+ L F G V ++ DP
Sbjct: 94 SFGIGERRPDAGPD---------HSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDP 144
Query: 293 NSVLR--FAFIEFTDEAEGARAALNLAGTMLGFYPVRV---LPSKT-------------- 333
N+ + F++F+DE+E RA + G P+R+ P KT
Sbjct: 145 NTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAA 204
Query: 334 -------------AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG 380
APVN T P E ++ TIY N+D V++ ++K F G
Sbjct: 205 APVPKAIYPVPAYTTAPVN-TVPP----EYDVNNTTIYVGNLDLNVSEEELKQNFLQF-G 258
Query: 381 EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
E+ +++ H FV+F SA A+ G +LG IRVS
Sbjct: 259 EIVSVKV----HPGKACGFVQFGARASAEEAIQKMQGKILGQQVIRVS 302
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L +F G ++ R+C D + L +A+I F A+ RA
Sbjct: 75 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 134
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S R R+ I+ N++ + D K +
Sbjct: 135 MNFEMIKGQPIRIMWSH------------RDPGLRKSGMGNIFIKNLENSI---DNKALY 179
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ + H S FV F E+A A+N +G++L
Sbjct: 180 DTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLL 226
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 18/248 (7%)
Query: 189 AKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAV---RRKKSFGQGKRRMNSR 245
+K N HG GF GF + F H A +N + RK G K R
Sbjct: 191 SKVVYNEHGSRGF--GF-----VHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE 243
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFT 304
L R + VYV ++ + E+ L LF G++ ++ D N R F F+ F
Sbjct: 244 AELGARA-LGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFE 302
Query: 305 DEAEGARAALNLAGTMLG---FYPVRVLPSKTAIAPVNPTFLP-RTEDEREMCARTIYCT 360
E +A ++ G + Y R + + F + E + +Y
Sbjct: 303 KHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVK 362
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
N+D + +K F S G + +++ + HS FV F E A A+ +G ++
Sbjct: 363 NLDDSINDERLKEVF-SAYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIV 421
Query: 420 GSLPIRVS 427
G+ P+ V+
Sbjct: 422 GTKPLYVA 429
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 25/176 (14%)
Query: 165 DMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVN 224
D + LQ+LFS+ M S+ ++N GF F N F H V+
Sbjct: 266 DEQGLQDLFSQFGKMQ------SVKVMRDSNGQSRGFG---FVN----FEKHEEAQKAVD 312
Query: 225 A--NAAVRRKKSF-GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQ 272
VR + + G+ ++R ++ L +R E +++ +YV ++D + +E+
Sbjct: 313 HMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDER 372
Query: 273 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
L +F G + ++ + + F F+ F+ E +A + G ++G P+ V
Sbjct: 373 LKEVFSAYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 428
>gi|30179878|sp|O01671.3|SXL_MEGSC RecName: Full=Sex-lethal homolog
gi|9743624|emb|CAC01696.1| sex-lethal homologue [Megaselia scalaris]
Length = 321
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 243 NSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAF 300
NS SL + V+ + Q + + +L +LF G + CRI D + + F
Sbjct: 64 NSTNSLNSGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGF 123
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
++F EA+ RA NL G VR K + A P E R+ +Y T
Sbjct: 124 VDFGSEADALRAINNLNGIT-----VRNKRIKVSFA------RPGGEQLRDT---NLYVT 169
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHST--RIAFVEFVM---AESAIAALNCS 415
N+ + +T ++ F G++ + +L D H T +AF+ F A+ AI+ALN
Sbjct: 170 NLSRSITDEQLETIFGKY-GQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNV 228
Query: 416 GVVLGSLPIRVSPSKTPVRPR-----APRLPMH 443
G+ P+ V ++ + + AP P H
Sbjct: 229 IPEGGTQPLTVRVAEEHGKSKGHVYMAPNQPPH 261
>gi|225461001|ref|XP_002280601.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Vitis vinifera]
Length = 417
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 90/221 (40%), Gaps = 37/221 (16%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVG------CGQVVDCR 287
+ G G+RR + T++V D+ VT+ L F G +VV R
Sbjct: 169 TLGAGERRADDTPDY---------TIFVGDLASDVTDYVLQETFRGHYPSVKGAKVVTDR 219
Query: 288 ICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT- 346
G + F+ F DE E RA + G P+R+ P+ T PV +
Sbjct: 220 TTGRSKG---YGFVRFGDEGEQLRAMNEMNGMFCSTRPMRIGPAATK-KPVGGQQFQKAS 275
Query: 347 -------EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAF 399
+ E + TI+ +D VT ++ F S GE+ +++ R F
Sbjct: 276 FQNTQGNQGESDPNNTTIFVGGLDSNVTDDYLRQVF-SQYGELVHVKI----PVGKRCGF 330
Query: 400 VEF---VMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRA 437
V+F AE A+A LN G LG+ IR+S ++P +A
Sbjct: 331 VQFANRACAEQALAGLN--GTQLGAQSIRLSWGRSPSNKQA 369
>gi|148704375|gb|EDL36322.1| poly(A) binding protein, nuclear 1, isoform CRA_a [Mus musculus]
Length = 294
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 160 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 216
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 217 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 247
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 162 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 220
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 221 KESVRTSLALDESLFRGRQIKVIPKRT 247
>gi|301792821|ref|XP_002931377.1| PREDICTED: polyadenylate-binding protein 2-like [Ailuropoda
melanoleuca]
Length = 178
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 34 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 90
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 91 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 121
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 36 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 94
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 95 KESVRTSLALDESLFRGRQIKVIPKRT 121
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 243 NSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAF 300
+ T AQ+ ++YV D++ VTE QL F G VV R+C D L +A+
Sbjct: 23 DGTTPAAQQPGAGTSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAY 82
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + A A L ++ P+RVL S+ R R I+
Sbjct: 83 VNFQSPNDAAHAIDVLNFQVINGKPIRVLYSQ------------RDPAVRRSGVGNIFIK 130
Query: 361 NIDKKVTQADVKLFFESVC--GEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSG 416
N+DK + D K ++ G + ++ D +++ FV+F E+A AA+ N +G
Sbjct: 131 NLDKAI---DNKALLDTFAQFGTITSAKVAMDGQGNSKGYGFVQFETQEAAQAAIDNVNG 187
Query: 417 VVLGSLPIRVSP 428
+ L + V P
Sbjct: 188 MELNDKQVYVGP 199
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGA 310
E++ +Y+ +++ +E+L LF G + CR+ D + V R AF+ F+ E
Sbjct: 313 EKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPDEAT 372
Query: 311 RAALNLAGTMLGFYPVRV 328
RA + G M+G P+ V
Sbjct: 373 RAVTEMNGKMVGAKPLYV 390
>gi|194374387|dbj|BAG57089.1| unnamed protein product [Homo sapiens]
Length = 168
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 34 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 90
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 91 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 121
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 36 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 94
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 95 KESVRTSLALDESLFRGRQIKVIPKRT 121
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++Y D+D TE QL LF G VV R+C D L +A++ F + ARA
Sbjct: 33 SLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAIDA 92
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L ++ P+R++ S+ R R+ I+ N+DK++ D K +
Sbjct: 93 LNFQVVNGKPIRIMYSQ------------RDPALRKSGVGNIFIKNLDKEI---DNKALY 137
Query: 376 ESVC--GEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
++ G + ++ D S FV+F E A +A+ +G++L + V P
Sbjct: 138 DTFAQFGNIVSAKVATDLQGQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVGP 194
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGA 310
E++ +Y+ +++ V + +L LF G + CR+ D R AF+ F+ E
Sbjct: 308 EKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDTAGASRGSAFVAFSSADEAT 367
Query: 311 RAALNLAGTMLGFYPVRV 328
RA + G M G P+ V
Sbjct: 368 RAVTEMNGKMAGQKPLYV 385
>gi|66818257|ref|XP_642788.1| polyadenylate-binding protein 2 [Dictyostelium discoideum AX4]
gi|74997256|sp|Q54ZS8.1|PABP2_DICDI RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName:
Full=Poly(A)-binding protein II; Short=PABII
gi|60470900|gb|EAL68872.1| polyadenylate-binding protein 2 [Dictyostelium discoideum AX4]
Length = 222
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 348 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMA 405
D+ E+ +R++Y N+D K T + +F+S CG V R+ +L D H +VEFV
Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQS-CGTVNRITILSDKTTGHPKGCCYVEFVNK 152
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKT--PVRPRAPRLP 441
ES I A+ + ++++P +T P R LP
Sbjct: 153 ESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLP 190
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV-----VDCRICGDPNSVLRFAFIEF 303
+EEI R+VYV ++D + T +Q+ A F CG V + + G P ++EF
Sbjct: 93 TDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGC---CYVEF 149
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
++ E A+ L + +++ P +T +
Sbjct: 150 VNK-ESIINAMALNDSFFNERQLKITPKRTNL 180
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 17/177 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFT 304
+ AQ+ ++YV ++D VTE L LF GQV R+C D + L +A++ +
Sbjct: 37 TTAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 96
Query: 305 DEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDK 364
+G +A L T++ P R++ S+ +P R+ ++ N+D
Sbjct: 97 SSEDGEKALEELNYTVIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDH 144
Query: 365 KVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ + F + G + ++ D H +++ FV + AE+A A+ + +G++L
Sbjct: 145 AIDNKALHDTF-AAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLL 200
>gi|26328001|dbj|BAC27741.1| unnamed protein product [Mus musculus]
Length = 292
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 158 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 214
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 215 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 245
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 160 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 218
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 219 KESVRTSLALDESLFRGRQIKVIPKRT 245
>gi|345491945|ref|XP_001599982.2| PREDICTED: nucleolar protein 12-like [Nasonia vitripennis]
Length = 613
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 37/203 (18%)
Query: 245 RTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-------------- 290
R S ++ + RT+YV ++ +++T + + LF G++ R+ G
Sbjct: 320 RLSSEEQAALDARTIYVGNVPKEMTVKTIKKLFRPFGEIDSIRVRGVVAEDSRMSAKVAT 379
Query: 291 -----DPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
P + ++ F +E + A+ AL L G LG +RV S
Sbjct: 380 ITKKMHPKVSTVYVYVAFKEE-QSAKDALKLNGHKLGENTLRVDLS-------------- 424
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHH--STRIAFVEFV 403
T+++ R ++ NI +T+ +V+ F+S CG++ +R++ D S I +V F
Sbjct: 425 TKNKDHDQKRAVFLGNIPFDITEDEVRKHFDS-CGKIESVRIVKDRKSGLSRGIGYVNFE 483
Query: 404 MAESAIAALNCSGVVLGSLPIRV 426
+S AL +G L + IRV
Sbjct: 484 NQDSVTLALELNGTNLKNREIRV 506
>gi|224060343|ref|XP_002300152.1| predicted protein [Populus trichocarpa]
gi|222847410|gb|EEE84957.1| predicted protein [Populus trichocarpa]
Length = 892
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAE 308
A++E+ +++T++VS++ +T EQL LF CG VV+C I +S A+IE++ + E
Sbjct: 315 ARKEDALKKTLHVSNLSPLLTVEQLKQLFSFCGTVVECAIADSKHS----AYIEYS-KPE 369
Query: 309 GARAALNLAGTMLGFYPVRVLPSKT 333
A AAL L +G P+ V +K+
Sbjct: 370 EATAALALNNMDVGGRPLNVEMAKS 394
>gi|299755830|ref|XP_001828914.2| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|298411401|gb|EAU92921.2| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 433
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 30/197 (15%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
V+V D+ +V +E L F G + D R+ D NS + F+ F D+ + +A +
Sbjct: 109 VFVGDLSPEVNDEVLGKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 168
Query: 317 AGTMLGFYPVRV------------------LPSKTAIAPVNPTFLPRTED----EREMCA 354
G LG +RV A APVN P T + +
Sbjct: 169 NGEWLGSRAIRVNWANQKTQGGAPGGGARPSAGGGAPAPVNFQGGPLTYEQVLAQTAPYN 228
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-N 413
T+Y N+ TQAD+ F+S+ G + +R+ D AFV+ E A A+
Sbjct: 229 TTVYVGNLVPYTTQADLIPLFQSI-GYLSEIRMQAD----RGFAFVKLDTHEHAAQAIVQ 283
Query: 414 CSGVVLGSLPIRVSPSK 430
G ++ PI+ S K
Sbjct: 284 LQGQMVHGRPIKCSWGK 300
>gi|281353092|gb|EFB28676.1| hypothetical protein PANDA_022375 [Ailuropoda melanoleuca]
Length = 152
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 20 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 76
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 77 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 107
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 22 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 80
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 81 KESVRTSLALDESLFRGRQIKVIPKRT 107
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 21/182 (11%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
+ + ++YV D++ VT+ L LF G VV R+C D ++ L + ++ + + + A
Sbjct: 28 QFVSTSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAA 87
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA ML F P+ P + + +P+ R I+ N+DK + D
Sbjct: 88 RAL-----DMLNFTPLNGKPIRIMYSFRDPSI-------RRSGTANIFIKNLDKAI---D 132
Query: 371 VKLFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
K ++ S G + ++ D ++ FV+F ESA A + +G++L + V
Sbjct: 133 NKALYDTFSTFGAILSCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYV 192
Query: 427 SP 428
P
Sbjct: 193 GP 194
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D + +++L LF G + C++ DPN + R + F+ F+ E +RA ++
Sbjct: 316 LYVKNLDDSIADDKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMN 375
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 376 GKMVASKPLYV 386
>gi|440893202|gb|ELR46056.1| Polyadenylate-binding protein 2, partial [Bos grunniens mutus]
Length = 189
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 45 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 101
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 102 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 132
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 47 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 105
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 106 KESVRTSLALDESLFRGRQIKVIPKRT 132
>gi|326480772|gb|EGE04782.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton equinum CBS 127.97]
Length = 507
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 22/182 (12%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---SVLRFAFIEFTDEAEG 309
E +R +YV +D +VTE+ L +F G V +I D N L + FIE+ D
Sbjct: 98 EPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFQSKGLNYGFIEYDDPGAA 157
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR-TIYCTNIDKKVTQ 368
RA L G + +R VN + T + + + I+ ++ +V
Sbjct: 158 ERAMQTLNGRRVHQSEIR----------VNWAYQSNTASKEDTSSHFHIFVGDLSNEVND 207
Query: 369 ADVKLFFESVCGEVYRLRLLGDYHHSTR-----IAFVEFVMAESAIAALNCSGVVLGSLP 423
+V L S CG V R++ D +AF E AE A+++++ G LGS
Sbjct: 208 -EVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMD--GEWLGSRA 264
Query: 424 IR 425
IR
Sbjct: 265 IR 266
>gi|354488039|ref|XP_003506178.1| PREDICTED: polyadenylate-binding protein 2-like [Cricetulus
griseus]
Length = 333
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 189 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 245
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 246 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 276
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 191 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 249
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 250 KESVRTSLALDESLFRGRQIKVIPKRT 276
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMIKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEASI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + ++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQHAINTMNGMLL 163
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYC 359
+ F + E A+ A+N + G +L + V V F R E E E+ AR +
Sbjct: 143 VHF-ETHEAAQHAINTMNGMLLNDHKVFV-----------GHFKSRREREVELGARAMEF 190
Query: 360 TNIDKKVTQADV------KLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL 412
TNI K QADV +LF S G++ ++++ D HS FV F E A A+
Sbjct: 191 TNIYVKNLQADVDEQGLQELF--SQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAV 248
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 25/176 (14%)
Query: 165 DMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNV- 223
D + LQELFS+ M S+ +++ GF F N F H V
Sbjct: 203 DEQGLQELFSQFGKML------SVKVMRDSSGHSRGFG---FVN----FETHEEAQKAVV 249
Query: 224 --NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQ 272
N R G+ ++R+ + L +R E +++ +YV ++D + +E+
Sbjct: 250 HMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEK 309
Query: 273 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
L F G + ++ + F F+ F+ E +A + G ++G P+ V
Sbjct: 310 LRKEFSPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|217074578|gb|ACJ85649.1| unknown [Medicago truncatula]
gi|388499396|gb|AFK37764.1| unknown [Medicago truncatula]
Length = 365
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 24/178 (13%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGA 310
E +RTV+ + + TE + F G+V D R+ D NS +IEF D A
Sbjct: 198 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD-AMSV 256
Query: 311 RAALNLAGTMLGFYPVRVLPSK-----------TAIAPVNPTFLPRTEDEREMCARTIYC 359
A+ L+G +L PV V PS+ + A V P R +Y
Sbjct: 257 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYG---------AVDRKLYV 307
Query: 360 TNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSG 416
N+ +T+A+++ FE EV +L L + H FV+F E A AA + +G
Sbjct: 308 GNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNG 365
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVE 401
P + ER+ RT++ + K T+ DV FF S G+V +RL+ D + S + ++E
Sbjct: 193 PEADPERDQ--RTVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVGYIE 249
Query: 402 FVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
F A S A+ SG +L P+ V PS+
Sbjct: 250 FYDAMSVPMAIALSGQLLLGQPVMVKPSEA 279
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 27/196 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R++ V++ ++D+ + + + F G ++ C++ D N + +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--- 356
F+ F E ++ + G +L V V F+PR E E+E+ +
Sbjct: 143 FVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELGEKAKLF 191
Query: 357 --IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG-DYHHSTRIAFVEF---VMAESAIA 410
+Y N + +++ ++ FE G++ +++ D S FV F AE+A+
Sbjct: 192 TNVYVKNFGEDLSEEQLRNMFEKF-GKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVD 250
Query: 411 ALNCSGVVLGSLPIRV 426
ALN +V G P+ V
Sbjct: 251 ALNGKELVEGK-PLYV 265
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 21/175 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+D+ + D K +
Sbjct: 72 MNFDLIRGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDRSI---DNKAMY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
+ S G + ++ D + +++ FV F E+A ++ +G++L + V
Sbjct: 117 DTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 171
>gi|189234753|ref|XP_974490.2| PREDICTED: similar to STE20-like kinase (yeast) [Tribolium
castaneum]
Length = 1819
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 14/213 (6%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ +++M S+ + QR++ + VYV I ++ E+ + F+ G +
Sbjct: 68 VLMKQTLAHQQQQMASQRTQVQRQQALALMCRVYVGSISFELKEDTIRQSFLPFGPIKSI 127
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + E A+ AL + G M+G ++V+ + + P +
Sbjct: 128 NMSWDPVTQKHKGFAFVEY-EIPEAAQLALEQMNGVMIGGRNIKVV-GRPSNMPQAQAVI 185
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDYHHSTRIAFVEF 402
++E + R IY +I +T+ D+K FE+ +Y +L H F+E+
Sbjct: 186 DEIQEEAKQYNR-IYVASIHPDLTEDDIKSVFEAFGPIIYCKLAQGSSGHKHKGYGFIEY 244
Query: 403 VMAES---AIAALNCSGVVLGSLPIRVSPSKTP 432
A++ AIA++N LG +RV + TP
Sbjct: 245 ETAQAANEAIASMNLFD--LGGQYLRVGRAITP 275
>gi|327299776|ref|XP_003234581.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton rubrum CBS 118892]
gi|326463475|gb|EGD88928.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton rubrum CBS 118892]
Length = 507
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 22/182 (12%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---SVLRFAFIEFTDEAEG 309
E +R +YV +D +VTE+ L +F G V +I D N L + FIE+ D
Sbjct: 98 EPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFQSKGLNYGFIEYDDPGAA 157
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR-TIYCTNIDKKVTQ 368
RA L G + +R VN + T + + + I+ ++ +V
Sbjct: 158 ERAMQTLNGRRVHQSEIR----------VNWAYQSNTASKEDTSSHFHIFVGDLSNEVND 207
Query: 369 ADVKLFFESVCGEVYRLRLLGDYHHSTR-----IAFVEFVMAESAIAALNCSGVVLGSLP 423
+V L S CG V R++ D +AF E AE A+++++ G LGS
Sbjct: 208 -EVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMD--GEWLGSRA 264
Query: 424 IR 425
IR
Sbjct: 265 IR 266
>gi|431907175|gb|ELK11241.1| Polyadenylate-binding protein 2 [Pteropus alecto]
Length = 208
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 64 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 120
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 121 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 151
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 66 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 124
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 125 KESVRTSLALDESLFRGRQIKVIPKRT 151
>gi|195331490|ref|XP_002032434.1| GM23518 [Drosophila sechellia]
gi|194121377|gb|EDW43420.1| GM23518 [Drosophila sechellia]
Length = 464
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 18/184 (9%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T+YV ++D V+E+ L ALF G V C+I +P + +AFIE+++ + A AL
Sbjct: 7 KTLYVGNLDTSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSN-YQAASTALTA 64
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
L + + + A +P N P+T+ I+ ++ ++ ++ F
Sbjct: 65 MNKRL--FLEKEIKVNWATSPGN---QPKTDISSH---HHIFVGDLSPEIETETLREAFA 116
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
GE+ R++ D H S AFV FV AE+AI A+N G +GS IR + S
Sbjct: 117 PF-GEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRTNWSTR 173
Query: 432 PVRP 435
+ P
Sbjct: 174 KLPP 177
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARA 312
+ ++YV D++ V+E QL +F GQVV R+C D L +A++ + + + RA
Sbjct: 22 VSTSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRA 81
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L + P+R++ F R R+ I+ N+DK + +
Sbjct: 82 LELLNFNAVNGKPIRIM------------FSHRDPSIRKSGTANIFIKNLDKSIDNKALH 129
Query: 373 LFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F + G + ++ D S FV+F ESA A+ +G++L + V P
Sbjct: 130 DTF-AAFGTILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVGP 186
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 21/116 (18%)
Query: 250 QREEIIRR----TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFT 304
+R+E I + +Y+ ++D + +E+L +F G +V C++ DP R + F+ F+
Sbjct: 295 ERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFS 354
Query: 305 DEAEGARAALNLAGTMLGFYPVRV----------------LPSKTAIAPVNPTFLP 344
E RA + G M+G P+ V +T + P PT LP
Sbjct: 355 SPDEATRAVTEMNGKMVGSKPLYVALAQRKEERRNRLQAAFAQRTPVGPAVPTSLP 410
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 105/266 (39%), Gaps = 43/266 (16%)
Query: 160 GDFKRDMRELQ--ELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHN 217
GD + + E Q E+FS++ + V L + + +N A +L N N
Sbjct: 29 GDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALELLNFN 88
Query: 218 ARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRT----VYVSDIDQQVTEEQL 273
A NG R + R+ IR++ +++ ++D+ + + L
Sbjct: 89 AVNGK--------------------PIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKAL 128
Query: 274 AALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332
F G ++ C++ DP+ + + F++F E A + G +L V V P
Sbjct: 129 HDTFAAFGTILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVGP-- 186
Query: 333 TAIAPVNPTFLPRTE-DEREMCAR--TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
F+ R E D+ + ++ +Y N+ T ++K FE+ G + ++
Sbjct: 187 ---------FVRRQERDQSGVVSKFNNVYVKNLADSTTDDELKKVFEAY-GPISSAVVMR 236
Query: 390 DYHHSTR-IAFVEFVMAESAIAALNC 414
D ++ FV F A+ A A+
Sbjct: 237 DNEGKSKCFGFVNFEHADDAAKAVEA 262
>gi|324497903|gb|ADY39600.1| putative TIA1 protein [Hottentotta judaicus]
Length = 196
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 20/175 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL- 316
T+YV ++D VTEE + ALF G V+ C+I +P + + F+EFTD A A L +
Sbjct: 1 TLYVGNLDPSVTEELILALFTQIGPVIGCKIIHEPGND-PYCFVEFTDHQAAAAALLAMN 59
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
LG + + A +P N P+ + + I+ ++ ++ +K F
Sbjct: 60 KRQCLG----KEMKVNWATSPGN---TPKQDTSKHY---HIFVGDLSPEIETQQLKEAFA 109
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRV 426
GE+ R++ D S FV FV AE+AIA +N G LGS IR
Sbjct: 110 PF-GEISDCRVVRDPQTLKSKGYGFVSFVKKTDAENAIATMN--GQWLGSRAIRT 161
>gi|308809515|ref|XP_003082067.1| RNA recognition motif (ISS) [Ostreococcus tauri]
gi|116060534|emb|CAL55870.1| RNA recognition motif (ISS) [Ostreococcus tauri]
Length = 412
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
E +RRT +VS+ +T EQ+ LF CG +V+CR + S FAFIEF E A A
Sbjct: 281 EELRRTAHVSNYPSALTVEQVKQLFSFCGTIVECR---EGPSGKNFAFIEFESNKE-ALA 336
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
AL L G +G +RV +KT P +PR
Sbjct: 337 ALALNGMNVGGRNIRVELAKT------PRLMPR 363
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT + +N +T VK F S CG + R + AF+EF + A+AAL
Sbjct: 285 RTAHVSNYPSALTVEQVKQLF-SFCGTIVECR---EGPSGKNFAFIEFESNKEALAALAL 340
Query: 415 SGVVLGSLPIRVSPSKTP-VRPRA 437
+G+ +G IRV +KTP + PRA
Sbjct: 341 NGMNVGGRNIRVELAKTPRLMPRA 364
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF G V R+C D + L +A++ + A+G +A
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ A I+ N+D + + F
Sbjct: 121 LNYTLIKGRPCRIMWSQ------------RDPALRKTGAGNIFIKNLDAAIDNKALHDTF 168
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D H +++ FV + E+A A+ + +G++L
Sbjct: 169 -AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLL 213
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALNL 316
+YV ++D VTE L LF GQV R+C D + L +A++ + +G RA L
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 115 NYTLIKGRPCRIMWSQR-----DPLL-------RKTGQGNVFIKNLDAAIDNKALHDTF- 161
Query: 377 SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +++ FV + AE+A A+ N +G++L
Sbjct: 162 AAFGNILSCKVAQDENANSKGYGFVHYETAEAANQAIKNVNGMLL 206
>gi|68073969|ref|XP_678899.1| splicing factor [Plasmodium berghei strain ANKA]
gi|56499509|emb|CAH94054.1| splicing factor, putative [Plasmodium berghei]
Length = 535
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN 413
T+ N+D K + D+ FF V G+V ++ + D S +A+VEF ES I AL+
Sbjct: 156 TVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQESVIKALS 215
Query: 414 CSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
+G +L + PI+V S+ + RA + H
Sbjct: 216 VNGYMLKNRPIKVQSSQAE-KNRAAKATKH 244
>gi|328715702|ref|XP_003245699.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 2
[Acyrthosiphon pisum]
gi|328715706|ref|XP_003245700.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 3
[Acyrthosiphon pisum]
Length = 420
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 13/162 (8%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
++V D+ ++ + L F G++ DCR+ DP ++ + F+ F +AE A +
Sbjct: 64 IFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSFLKKAEAESAIAAM 123
Query: 317 AGTMLGF------YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
G LG + R P+ + P ++ T+YC + +T
Sbjct: 124 NGQWLGSRSIRTNWATRKPPTLKTDSNTKPLTFDEVYNQSSPTNCTVYCGGLTSGLTDEL 183
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
V+ F G + +R+ D + AFV F ESA A+
Sbjct: 184 VQKTFAPF-GNIQEIRVFKDKGY----AFVRFATKESATHAI 220
>gi|326513006|dbj|BAK03410.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525779|dbj|BAJ88936.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 436
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 16/203 (7%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLR-- 297
R+N ++ +R++ T++V D+ VT+ L F V V ++ D ++
Sbjct: 165 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKG 224
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS----KTAI---APVNPTFLPRTEDER 350
+ F++F D E ARA + G P+R+ P+ T + P+ T + +
Sbjct: 225 YGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDN 284
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
+ TI+ +D VT+ +K F + GEV +++ R FV++ SA
Sbjct: 285 DPNNTTIFVGGLDPNVTEDALKQVF-APYGEVVHVKI----PVGKRCGFVQYANRPSAEQ 339
Query: 411 ALN-CSGVVLGSLPIRVSPSKTP 432
AL G ++G +R+S ++P
Sbjct: 340 ALQLLQGTLVGGQNVRLSWGRSP 362
>gi|27807029|ref|NP_776994.1| polyadenylate-binding protein 2 [Bos taurus]
gi|46396285|sp|Q28165.3|PABP2_BOVIN RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName: Full=Nuclear
poly(A)-binding protein 1; AltName: Full=Poly(A)-binding
protein II; Short=PABII; AltName:
Full=Polyadenylate-binding nuclear protein 1
gi|1051125|emb|CAA62006.1| polyA binding protein II [Bos taurus]
gi|126920947|gb|AAI33559.1| Poly(A) binding protein, nuclear 1 [Bos taurus]
gi|296483592|tpg|DAA25707.1| TPA: polyadenylate-binding protein 2 [Bos taurus]
Length = 306
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 219 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 249
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVIPKRT 249
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF G V R+C D + L +A++ + A+G +A
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ A I+ N+D + + F
Sbjct: 121 LNYTLIKGRPCRIMWSQ------------RDPALRKTGAGNIFIKNLDAAIDNKALHDTF 168
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D H +++ FV + E+A A+ + +G++L
Sbjct: 169 -AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLL 213
>gi|336376899|gb|EGO05234.1| hypothetical protein SERLA73DRAFT_44756 [Serpula lacrymans var.
lacrymans S7.3]
Length = 523
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 36/214 (16%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
V+V D+ +V +E L F G + D R+ D NS + F+ F D+ + +A +
Sbjct: 107 VFVGDLSPEVNDEILGKAFSAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 166
Query: 317 AGTMLGFYPVRV-----------------LPSKT--AIAPVNPTFLPRTED----EREMC 353
G LG +RV P T A AP+N P + D +
Sbjct: 167 NGEWLGSRAIRVNWANQKTQGSVAVASPPRPGATGGAPAPINFQGGPLSYDSVVQQTPSY 226
Query: 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAE-SAIAAL 412
T+Y N+ TQAD+ F+S+ G + +R+ D AFV+ E +A+A +
Sbjct: 227 NSTVYVGNLVPYCTQADLIPLFQSI-GYLSEIRMQAD----RGFAFVKLDTHEHAAMAIV 281
Query: 413 NCSGVVLGSLPIRVSPSK-----TPVRPRAPRLP 441
G ++ PI+ S K T +P P P
Sbjct: 282 QLQGQMVHGRPIKCSWGKDRADGTTAQPGGPLSP 315
>gi|156099298|ref|XP_001615651.1| splicing factor [Plasmodium vivax Sal-1]
gi|148804525|gb|EDL45924.1| splicing factor, putative [Plasmodium vivax]
Length = 1016
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN 413
T+ N+D K + D+ FF V G+V ++ + D S +A+VEF +S + AL+
Sbjct: 626 TVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQDSVVKALS 685
Query: 414 CSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
+G +L + PI++ S+ + RA + H
Sbjct: 686 ANGYMLKNRPIKIQSSQAE-KNRAAKAAKH 714
>gi|389742195|gb|EIM83382.1| polyadenylate-binding protein [Stereum hirsutum FP-91666 SS1]
Length = 422
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 35/202 (17%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
V+V D+ +V ++ LA F G + D R+ D NS + F+ F D+ + +A +
Sbjct: 109 VFVGDLSPEVNDDVLAKAFAAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 168
Query: 317 AGTMLGFYPVRV-------------------LPSKT----AIAPVN----PTFLPRTEDE 349
G LG +RV P++T A AP+N P +
Sbjct: 169 NGEWLGSRAIRVNWANQKTQGGLPVSGGPTASPTRTGAGGAPAPINFQGGPLSYESVVQQ 228
Query: 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAE-SA 408
T+Y N+ TQ+D+ F+S+ G + +R+ D AFV+ E +A
Sbjct: 229 TPAFNTTVYVGNLVPYCTQSDLIPLFQSI-GYLSEIRMQAD----RGFAFVKLDTHEHAA 283
Query: 409 IAALNCSGVVLGSLPIRVSPSK 430
+A + G ++ PI+ S K
Sbjct: 284 MAIVQLQGQLVHGRPIKCSWGK 305
>gi|356536490|ref|XP_003536770.1| PREDICTED: nucleolar protein 13-like [Glycine max]
Length = 394
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 11/173 (6%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQV--VDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+YV I TE+ + + F CG + VDC + A I F EA A+ AL L
Sbjct: 151 IYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIITFKTEA-AAKRALAL 209
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
G +G +++ P K A F P E IY N+ +T+ +++ FF
Sbjct: 210 DGADMGGLFLKIQPYKATRANKASDFAP----EILEGYNRIYVGNLSWDITEEELRKFFN 265
Query: 377 SVCGEVYRLRLLGDYHHST--RIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427
+ E+ LR D A V+F ++S AL VL P+R+S
Sbjct: 266 N--SEITSLRFGMDKETGEFRGYAHVDFGDSQSLKKALALDQNVLFGRPVRIS 316
>gi|225466283|ref|XP_002270255.1| PREDICTED: uncharacterized protein LOC100244513 [Vitis vinifera]
Length = 926
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGA 310
+ + +++T+ VS++ +T EQL LF CG VV+C I + FA+IE++ + E A
Sbjct: 337 KADALKKTLQVSNLSPLLTVEQLKQLFSFCGTVVECSITDSKH----FAYIEYS-KPEEA 391
Query: 311 RAALNLAGTMLGFYPVRV-----LPSKTAI--APVNPTFLP 344
AAL L +G P+ V LP K AI +P+ LP
Sbjct: 392 TAALALNNMDVGGRPLNVEMAKSLPPKPAILNSPLASPSLP 432
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|398407631|ref|XP_003855281.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
gi|339475165|gb|EGP90257.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
Length = 598
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAE 308
+EE +RTV+V + + +QL A F G VV+ +I D S ++EF DE E
Sbjct: 206 QEERDKRTVFVQQLAAALRTKQLKAFFEQSGPVVEAQIVKDRVSGRSKGVGYVEFADE-E 264
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART------------ 356
+ AL L G L P+ + TE E+ ART
Sbjct: 265 SVQKALELTGQKLMNIPI---------------IVQLTEAEKNRQARTSEGQPTQSNGIP 309
Query: 357 ---IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG-DYHHSTRIAFVEFVMAESAIAAL 412
+Y NI + ++D++ FE GE+ ++L D S FV+F ++ A AL
Sbjct: 310 FHRLYVGNIHFSIEESDLRDVFEPF-GELEFVQLQKEDTGRSKGYGFVQFAKSDEAKIAL 368
Query: 413 -NCSGVVLGSLPIRV 426
+G + PIRV
Sbjct: 369 EKMNGFEVAGRPIRV 383
>gi|296088276|emb|CBI36502.3| unnamed protein product [Vitis vinifera]
Length = 888
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGA 310
+ + +++T+ VS++ +T EQL LF CG VV+C I + FA+IE++ + E A
Sbjct: 337 KADALKKTLQVSNLSPLLTVEQLKQLFSFCGTVVECSITDSKH----FAYIEYS-KPEEA 391
Query: 311 RAALNLAGTMLGFYPVRV-----LPSKTAI--APVNPTFLP 344
AAL L +G P+ V LP K AI +P+ LP
Sbjct: 392 TAALALNNMDVGGRPLNVEMAKSLPPKPAILNSPLASPSLP 432
>gi|126717485|gb|AAI33469.1| PABPN1 protein [Bos taurus]
Length = 296
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 219 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 249
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVIPKRT 249
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 17/169 (10%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARA 312
+ ++YV D+DQ V E QL LF QVV R+C D L +A++ F+ + A
Sbjct: 33 LSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNA 92
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
+ L F PV P + I+ +P+ R+ ++ N+D + ++
Sbjct: 93 MEH-----LNFTPVNGKPIRIMISNRDPSI-------RKSGYANVFIKNLDLSIDNKALR 140
Query: 373 LFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESA-IAALNCSGVVL 419
F + G V ++ D + S FV+F ESA I+ +G++L
Sbjct: 141 DTF-AAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLL 188
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 9/177 (5%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
VYV ++ + T++ L LF G + + D N + F F+ F + A A L
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER-----EMCARTIYCTNIDKKVTQADVK 372
GT+LG + A + E ER ++ +Y N+D + +K
Sbjct: 275 GTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLK 334
Query: 373 LFFESVCGEVYRLRLLGDYHH-STRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
F S G + +++ D H S FV F + A ALN +G + G P+ V+
Sbjct: 335 ELF-SEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVA 390
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF G V R+C D + L +A++ + A+G +A
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ A I+ N+D + + F
Sbjct: 122 LNYTLIKGRPCRIMWSQ------------RDPALRKTGAGNIFIKNLDAAIDNKALHDTF 169
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D H +++ FV + E+A A+ + +G++L
Sbjct: 170 -AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLL 214
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTD--EAEGARAA 313
++YV D+ VTE L F G ++ R+C D L +A++ F AE A
Sbjct: 46 SLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAHAEWVLAT 105
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
+NL ++ P+R++ S+ R +R+ ++ N++K + D K
Sbjct: 106 MNL--DVIKGNPIRIMWSQ------------RDPGQRKRGVGNVFVKNLEKSI---DNKA 148
Query: 374 FFE--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
++ S G + +++ D + S FV F ESA A+ +G++L +L + V
Sbjct: 149 LYDTFSTFGRILSCKVISDENGSKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFV 204
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDGNLKELF-SQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAV 248
>gi|417409281|gb|JAA51155.1| Putative splicing factor rnps1 sr protein superfamily, partial
[Desmodus rotundus]
Length = 278
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 144 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 200
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 201 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 231
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 146 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 204
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 205 KESVRTSLALDESLFRGRQIKVIPKRT 231
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 33/187 (17%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ ++++E L LF G ++ RIC D + L +A++ F + + RA
Sbjct: 7 SLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAERALDT 66
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L + P+R++ S+ R R+ I+ N+DK + D K +
Sbjct: 67 LNYASVKGIPIRIMWSQ------------RDPSIRKSGIGNIFIKNLDKSI---DNKALY 111
Query: 376 ES-----------VCGEVYRLRLLGDYHHSTRIAFVEFVM---AESAIAALNCSGVVLGS 421
++ VC + GD S FV F AE AIA +N G++L
Sbjct: 112 DTFSAFGNILSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKIN--GMLLNG 169
Query: 422 LPIRVSP 428
+ V P
Sbjct: 170 KQVFVGP 176
>gi|4758876|ref|NP_004634.1| polyadenylate-binding protein 2 [Homo sapiens]
gi|343780920|ref|NP_001230477.1| polyadenylate-binding protein 2 [Sus scrofa]
gi|360039231|ref|NP_001123909.2| polyadenylate-binding protein 2 [Canis lupus familiaris]
gi|114652132|ref|XP_001162168.1| PREDICTED: polyadenylate-binding protein 2 isoform 1 [Pan
troglodytes]
gi|296214561|ref|XP_002753680.1| PREDICTED: polyadenylate-binding protein 2 isoform 2 [Callithrix
jacchus]
gi|395859297|ref|XP_003801976.1| PREDICTED: polyadenylate-binding protein 2 [Otolemur garnettii]
gi|402875708|ref|XP_003901638.1| PREDICTED: polyadenylate-binding protein 2 [Papio anubis]
gi|426376431|ref|XP_004055004.1| PREDICTED: polyadenylate-binding protein 2 [Gorilla gorilla
gorilla]
gi|46403176|sp|Q86U42.3|PABP2_HUMAN RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName: Full=Nuclear
poly(A)-binding protein 1; AltName: Full=Poly(A)-binding
protein II; Short=PABII; AltName:
Full=Polyadenylate-binding nuclear protein 1
gi|2895276|gb|AAC39596.1| poly(A) binding protein II [Homo sapiens]
gi|15012075|gb|AAH10939.1| Poly(A) binding protein, nuclear 1 [Homo sapiens]
gi|119586571|gb|EAW66167.1| poly(A) binding protein, nuclear 1, isoform CRA_a [Homo sapiens]
gi|119586572|gb|EAW66168.1| poly(A) binding protein, nuclear 1, isoform CRA_a [Homo sapiens]
gi|387539310|gb|AFJ70282.1| polyadenylate-binding protein 2 [Macaca mulatta]
Length = 306
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 219 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 249
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVIPKRT 249
>gi|406859894|gb|EKD12956.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1039
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 86/207 (41%), Gaps = 28/207 (13%)
Query: 226 NAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD 285
+A +R K FG + R+ T L T+YV++ E L LF CG++
Sbjct: 631 SALLRDGKYFGDRQIRVTPGTGL---------TLYVTNYPPTADENYLRKLFKECGEIFS 681
Query: 286 CRICG-DPNSVLRFAFIEFTDEAEGARAALNLAGTML-GFYPVRVLPSKTAIAPVNPTFL 343
R NS RF +I F + A AA L G L G Y + S
Sbjct: 682 IRWPSLKVNSHRRFCYISFRT-VDAAAAATKLDGQSLGGMYKLVAKHSD----------- 729
Query: 344 PRTEDEREMC---ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAF 399
P +R+ R I+ T+ID +T +++ F S G+V R+ LL ++ AF
Sbjct: 730 PPNRQKRQGALAEGREIHVTSIDPSITPDELEKLF-SKYGKVERVNLLTKVSGESKGAAF 788
Query: 400 VEFVMAESAIAALNCSGVVLGSLPIRV 426
V F E A AAL+ L S + V
Sbjct: 789 VSFATKEGAAAALDLDKTKLKSRVLNV 815
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 88
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 89 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 133
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 134 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 180
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 100 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 159
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 160 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 208
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 209 NVYIKNFGEEVDDGNLKELF-SQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAV 265
>gi|126010727|gb|AAI33552.1| PABPN1 protein [Bos taurus]
Length = 275
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 131 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 187
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 188 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 218
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 133 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 191
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 192 KESVRTSLALDESLFRGRQIKVIPKRT 218
>gi|414875768|tpg|DAA52899.1| TPA: hypothetical protein ZEAMMB73_898845 [Zea mays]
Length = 34
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 28/30 (93%)
Query: 411 ALNCSGVVLGSLPIRVSPSKTPVRPRAPRL 440
ALNCSG++LG+LP+RVSPSKTPV+PR R+
Sbjct: 2 ALNCSGMILGTLPVRVSPSKTPVKPRVNRV 31
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|70938791|ref|XP_740024.1| splicing factor [Plasmodium chabaudi chabaudi]
gi|56517446|emb|CAH81784.1| splicing factor, putative [Plasmodium chabaudi chabaudi]
Length = 412
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN 413
T+ N+D K + D+ FF V G+V ++ + D S +A+VEF ES I AL
Sbjct: 148 TVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQESVIKALA 207
Query: 414 CSGVVLGSLPIRVSPSKTPVRPRAPRLPMH 443
+G +L + PI+V S+ + RA + H
Sbjct: 208 ANGYMLKNRPIKVQSSQAE-KNRAAKASKH 236
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA--FIEFTDEAEGARAAL 314
+++YV D++ VT+ QL G GQV+ R+C D F ++ F + + ARA
Sbjct: 39 QSLYVGDLEASVTDSQLYEFQPG-GQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALE 97
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
L L P+RV+ S R R + I+ N+DK + +
Sbjct: 98 LLNFAPLNGKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKAIDHKTLHDT 145
Query: 375 FESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
F S G + ++ D S FV++ E+A +A+ + +G+++ P+ V P
Sbjct: 146 F-SAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGP 200
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D + ++QL LF G++ C+I D N V + + F+ F+ E ++A +
Sbjct: 322 LYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMN 381
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREM 352
G M+ P+ V F R ED + M
Sbjct: 382 GKMISGKPLYV------------AFAQRKEDRKAM 404
>gi|367054118|ref|XP_003657437.1| hypothetical protein THITE_2123146 [Thielavia terrestris NRRL 8126]
gi|347004703|gb|AEO71101.1| hypothetical protein THITE_2123146 [Thielavia terrestris NRRL 8126]
Length = 573
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 23/187 (12%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
+E RRTV+V + ++ +L F G V + +I D N ++EF +E E
Sbjct: 184 DERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNE-ES 242
Query: 310 ARAALNLAGTMLGFYPVRVLPS--------KTAIAPVNPTFLPRTEDEREMCARTIYCTN 361
AAL L G L PV V P+ + + +P +P +Y N
Sbjct: 243 VAAALQLTGQKLLGIPVIVQPTEAEKNRQVRNTESSGHPNSVP---------FHRLYVGN 293
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
I +T+ D++ FE GE+ ++L D +R FV+F A A AL +G L
Sbjct: 294 IHFSITETDLQNVFEPF-GELEFVQLQKDDSGRSRGYGFVQFRDAGQAREALEKMNGFDL 352
Query: 420 GSLPIRV 426
PIRV
Sbjct: 353 AGRPIRV 359
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFV 403
T DER+ RT++ + ++ ++K FFE V G V +++ D + S + +VEF
Sbjct: 182 TGDERDR--RTVFVQQLAARLRTRELKEFFEKV-GPVAEAQIVKDRVSNRSKGVGYVEFK 238
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSK 430
ES AAL +G L +P+ V P++
Sbjct: 239 NEESVAAALQLTGQKLLGIPVIVQPTE 265
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|356575464|ref|XP_003555861.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
Length = 600
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 11/181 (6%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAA 313
+R V+ I + E + F G+V D R+ D NS +IEF D A
Sbjct: 225 QRAVFAYQISLKADERDVFEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYD-VMSVPMA 283
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTF-----LPRTEDEREMCARTIYCTNIDKKVTQ 368
+ L+G L PV V PS+ V T L AR +Y N+ +T+
Sbjct: 284 IALSGQPLLGQPVMVKPSEAEKNLVQSTTSVANGLTGLIGPYSGGARKLYVGNLHISITE 343
Query: 369 ADVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAALNCSG-VVLGSLPIRV 426
AD++ FE+ G+V ++L L + H FV+F E A A + +G + +G I+V
Sbjct: 344 ADIRRVFEAF-GQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKV 402
Query: 427 S 427
S
Sbjct: 403 S 403
>gi|345484300|ref|XP_003424998.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
half pint-like [Nasonia vitripennis]
Length = 605
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 10/211 (4%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ +++M S+ + QR++ + VYV I ++ E+ + F+ G +
Sbjct: 92 VLMKQTLAHQQQQMASQRNQVQRQQALALMCRVYVGSISFELKEDTIRQAFLPFGPIKSI 151
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + E A+ AL + G M+G ++V+ + + P + +
Sbjct: 152 NMSWDPATQKHKGFAFVEY-EIPEAAQLALEQMNGVMIGGRNIKVV-GRPSNMPQAQSVI 209
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDYHHSTRIAFVEF 402
+E + R IY +I + +T+ D+K FE+ Y +L H F+E+
Sbjct: 210 DEITEESKHYNR-IYIASIHQDLTEEDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEY 268
Query: 403 VMAESAIAALNCSGVV-LGSLPIRVSPSKTP 432
+SA+ A+ + LG +RV + TP
Sbjct: 269 ESMQSALEAIASMNLFDLGGQYLRVGRAITP 299
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 21/187 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D + L +A++ F A+ RA
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R A I+ N+DK + + F
Sbjct: 79 MNFDMMYGKPIRIMWSQ------------RDPSMRRSGAGNIFIKNLDKSIDNKAIYDTF 126
Query: 376 ESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPSKTPV 433
S+ G + ++ D +S FV F ESA A+ +G++L + V
Sbjct: 127 -SMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVG----KF 181
Query: 434 RPRAPRL 440
+PR RL
Sbjct: 182 QPRMARL 188
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|380800735|gb|AFE72243.1| polyadenylate-binding protein 2, partial [Macaca mulatta]
Length = 273
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 129 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 185
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 186 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 216
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 131 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 189
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 190 KESVRTSLALDESLFRGRQIKVIPKRT 216
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDGNLKELF-SQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAV 248
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 17/169 (10%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARA 312
+ ++YV D+DQ V E QL LF QVV R+C D L +A++ F+ + A
Sbjct: 33 LSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNA 92
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
+ L F PV P + I+ +P+ R+ ++ N+D + ++
Sbjct: 93 MEH-----LNFTPVNGKPIRIMISNRDPSI-------RKSGYANVFIKNLDLSIDNKALR 140
Query: 373 LFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESA-IAALNCSGVVL 419
F + G V ++ D + S FV+F ESA I+ +G++L
Sbjct: 141 DTF-AAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLL 188
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 17/181 (9%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
VYV ++ + T++ L LF G + + D N + F F+ F + A A L
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 318 GTMLG----FYPVRVLPSKTAIAPVNPTFLPRTEDER-----EMCARTIYCTNIDKKVTQ 368
GT+LG Y R A + F E ER ++ +Y N+D +
Sbjct: 275 GTVLGDDKTLYVGRAQRKAEREAELKAKF----EQERKSRFEKLQGANLYIKNLDDHIDD 330
Query: 369 ADVKLFFESVCGEVYRLRLLGDYHH-STRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
+K F S G + +++ D H S FV F + A ALN +G + G P+ V
Sbjct: 331 EKLKELF-SEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYV 389
Query: 427 S 427
+
Sbjct: 390 A 390
>gi|348525751|ref|XP_003450385.1| PREDICTED: ELAV-like protein 2-like [Oreochromis niloticus]
Length = 440
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 28/187 (14%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAA 313
+ + V+ + Q +T+E+L +LF G++ C++ D L + F+ + D + +A
Sbjct: 118 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAI 177
Query: 314 LNLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
L G L ++V PS +I N +Y + + K +TQ +
Sbjct: 178 NTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMTQKE 220
Query: 371 VKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEF---VMAESAIAALNCSGVVLGSLPIR 425
++ F S G + R+L D S + F+ F V AE AI LNC + PI
Sbjct: 221 LEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNCQKPPGATEPIT 279
Query: 426 VSPSKTP 432
V + P
Sbjct: 280 VKFANNP 286
>gi|28193136|emb|CAD62310.1| unnamed protein product [Homo sapiens]
Length = 298
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 164 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 220
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 221 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 251
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 166 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 224
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 225 KESVRTSLALDESLFRGRQIKVIPKRT 251
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDGNLKELF-SQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAV 248
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELFIQF-GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|357519763|ref|XP_003630170.1| RNA-binding protein [Medicago truncatula]
gi|355524192|gb|AET04646.1| RNA-binding protein [Medicago truncatula]
Length = 567
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 7/178 (3%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAA 313
+RTV+ + + TE + F G+V D R+ D NS +IEF D A A
Sbjct: 201 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD-AMSVPMA 259
Query: 314 LNLAGTMLGFYPVRVLPSKTA--IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
+ L+G +L PV V PS+ + N + R +Y N+ +T+A++
Sbjct: 260 IALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANL 319
Query: 372 KLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVV-LGSLPIRVS 427
+ FE EV +L L + H FV+F E A AA + +G + + I+VS
Sbjct: 320 REIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVS 377
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVE 401
P + ER+ RT++ + K T+ DV FF S G+V +RL+ D + S + ++E
Sbjct: 193 PEADPERDQ--RTVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVGYIE 249
Query: 402 FVMAESAIAALNCSGVVLGSLPIRVSPSK 430
F A S A+ SG +L P+ V PS+
Sbjct: 250 FYDAMSVPMAIALSGQLLLGQPVMVKPSE 278
>gi|313226301|emb|CBY21445.1| unnamed protein product [Oikopleura dioica]
Length = 471
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEA 307
A+ +EI +RT+YV ++ + TE L ALF G VVD ++ D S + FI +
Sbjct: 39 AKDDEIFKRTLYVGNLHKNATENVLKALFAVIGNVVDIKMINDAALSTSHYCFITYETHV 98
Query: 308 EGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367
RA + G + P++ VN P + I+ ++ +++T
Sbjct: 99 GAQRALAAMNGRDVYKMPLK----------VNWATRPDGIKKDTSKDHHIFVGDLAQELT 148
Query: 368 QADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMAESAIAAL 412
D++ FE G++ R++ D + S FV F+ ESA A+
Sbjct: 149 TLDLQNEFEKF-GKISEARVVRDAQTNRSKGYGFVAFLKKESAEMAI 194
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 88
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 89 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 133
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 134 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 180
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 100 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 159
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 160 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 208
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 209 NVYIKNFGEEVDDGNLKELF-SQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAV 265
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L +F G V R+C D + L +A++ + + A+ RA
Sbjct: 85 SLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQ 144
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L +++ R++ S+ R R+ I+ N+D+ + + F
Sbjct: 145 LNYSLIKNKACRIMWSQ------------RDPSLRKTGQGNIFIKNLDETIDNKALHDTF 192
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+ G++ ++ D H +++ FV +V ESA AA+
Sbjct: 193 -AAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAI 229
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
+YV ++D + +E+L F G + C++ D + F F+ F+ E +A +
Sbjct: 370 LYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMN 429
Query: 318 GTMLGFYPVRV 328
G MLG P+ V
Sbjct: 430 GKMLGSKPLYV 440
>gi|297694743|ref|XP_002824624.1| PREDICTED: polyadenylate-binding protein 2 isoform 1 [Pongo abelii]
Length = 296
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 219 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 249
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVIPKRT 249
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L +F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S R R+ I+ N++ + D K +
Sbjct: 72 MNFEVIKGQPIRIMWSH------------RDPGLRKSGMGNIFIKNLENSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ + H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLL 163
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 18/248 (7%)
Query: 189 AKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAV---RRKKSFGQGKRRMNSR 245
+K N HG GF GF + F H A +N + RK G K R
Sbjct: 128 SKVVYNEHGSRGF--GF-----VHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE 180
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFT 304
L R + +YV ++ V E++L LF G + ++ D N R F F+ F
Sbjct: 181 AELGARA-LGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFE 239
Query: 305 DEAEGARAALNLAGTMLG---FYPVRVLPSKTAIAPVNPTFLP-RTEDEREMCARTIYCT 360
E +A ++ G + Y R + + F + E + +Y
Sbjct: 240 KHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVK 299
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
N+D + +K F S G + +++ + HS FV F E A A+ +G ++
Sbjct: 300 NLDDSINDERLKEVF-STYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 420 GSLPIRVS 427
G+ P+ V+
Sbjct: 359 GTKPLYVA 366
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 165 DMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNV- 223
D + LQ+LFS+ M S+ ++N GF F N F H V
Sbjct: 203 DEQRLQDLFSQFGNMQ------SVKVMRDSNGQSRGFG---FVN----FEKHEEAQKAVD 249
Query: 224 --NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQ 272
N + G+ ++R ++ L +R E +++ +YV ++D + +E+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 273 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
L +F G + ++ + + F F+ F+ E +A + G ++G P+ V
Sbjct: 310 LKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|91086169|ref|XP_970456.1| PREDICTED: similar to TIA-1 homolog [Tribolium castaneum]
gi|270010230|gb|EFA06678.1| hypothetical protein TcasGA2_TC009608 [Tribolium castaneum]
Length = 364
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 19/186 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T+YV ++D V+E+ L LF G V C+I +P + +AF+EFT+ + A L
Sbjct: 8 KTLYVGNLDPSVSEDLLCTLFSQIGPVKGCKIIREPGND-PYAFVEFTNHQSASTA---L 63
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
A + + + A +P N P+ + I+ ++ ++ ++ F
Sbjct: 64 AAMNKRLFLDKEMKVNWATSPGN---QPKQDTSNH---HHIFVGDLSPEIETETLREAFA 117
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPS-K 430
GE+ R++ D S AFV FV AE+AI A+N G LGS IR + S +
Sbjct: 118 PF-GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQAMN--GQWLGSRSIRTNWSTR 174
Query: 431 TPVRPR 436
P P+
Sbjct: 175 KPPPPK 180
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L +F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S R R I+ N++ + D K +
Sbjct: 72 MNFEMIKGQPIRIMWSH------------RDPGLRRSGMGNIFIKNLENSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ + H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLL 163
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 95/248 (38%), Gaps = 18/248 (7%)
Query: 189 AKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAV---RRKKSFGQGKRRMNSR 245
+K N HG GF GF + F H A +N + RK G K R
Sbjct: 128 SKVVYNEHGSRGF--GF-----VHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE 180
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFT 304
L R + +YV ++ + E+ L LF G+ ++ D N R F FI F
Sbjct: 181 AELGARA-LGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFE 239
Query: 305 DEAEGARAALNLAGTMLG---FYPVRVLPSKTAIAPVNPTFLP-RTEDEREMCARTIYCT 360
E +A ++ G + Y R + F + E + +Y
Sbjct: 240 KHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVK 299
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
N+D + +K F S G + +++ + HS FV F E A A+ +G ++
Sbjct: 300 NLDDSINDDRLKEVF-STYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 420 GSLPIRVS 427
G+ P+ V+
Sbjct: 359 GTKPLYVA 366
>gi|346465875|gb|AEO32782.1| hypothetical protein [Amblyomma maculatum]
Length = 558
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFV 403
T +ER+M RT++C + +++ D++ FF +V G+V +RL+ D S IA+VEF+
Sbjct: 190 TPEERDM--RTVFCMQLSQRIRARDLEEFFSAV-GKVRDVRLIMDNKTRRSKGIAYVEFL 246
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSK 430
ES A+ +G L +PI V P++
Sbjct: 247 DVESVPLAMGLNGQKLFGIPIVVQPTQ 273
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR---FAFIEFTDEAE 308
EE RTV+ + Q++ L F G+V D R+ D N R A++EF D E
Sbjct: 192 EERDMRTVFCMQLSQRIRARDLEEFFSAVGKVRDVRLIMD-NKTRRSKGIAYVEFLD-VE 249
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTA---IAPVNPTFLPRTEDEREMCARTIYCTNIDKK 365
A+ L G L P+ V P++ A N + T + +Y ++
Sbjct: 250 SVPLAMGLNGQKLFGIPIVVQPTQAERNRAAAQNASTSSSTLQRGNVGPMRLYVGSLHFN 309
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAAL-NCSGVVLGSL 422
+T+ +K FE G++ ++ L+ D + S F+ F +E A AL +G L
Sbjct: 310 ITEDMLKGIFEPF-GKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFELAGR 368
Query: 423 PIRV 426
P++V
Sbjct: 369 PMKV 372
>gi|315052890|ref|XP_003175819.1| nucleolysin TIA-1 [Arthroderma gypseum CBS 118893]
gi|311341134|gb|EFR00337.1| nucleolysin TIA-1 [Arthroderma gypseum CBS 118893]
Length = 506
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 26/186 (13%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSV-------LRFAFIEFTD 305
E +R +YV +D +VTE+ L +F G V +I D N+ L + FIE+ D
Sbjct: 93 EPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNASAQFQSKGLNYGFIEYDD 152
Query: 306 EAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR-TIYCTNIDK 364
RA L G + +R VN + T + + + I+ ++
Sbjct: 153 PGAAERAMQTLNGRRVHQSEIR----------VNWAYQSNTASKEDTSSHFHIFVGDLSN 202
Query: 365 KVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-----IAFVEFVMAESAIAALNCSGVVL 419
+V +V L S CG V R++ D +AF E AE A+++++ G L
Sbjct: 203 EVND-EVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMD--GEWL 259
Query: 420 GSLPIR 425
GS IR
Sbjct: 260 GSRAIR 265
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAANKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +++ F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLRELF-SQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAV 248
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAANKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +++ F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLRELF-SQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAV 248
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|242062048|ref|XP_002452313.1| hypothetical protein SORBIDRAFT_04g023540 [Sorghum bicolor]
gi|241932144|gb|EES05289.1| hypothetical protein SORBIDRAFT_04g023540 [Sorghum bicolor]
Length = 435
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 13/182 (7%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVV-DCRICGDPNSVLR--FAFIEFTDEAEGARAAL 314
+++V D+ VT+E L LF + V ++ D N+ + F+ F D+ + A
Sbjct: 203 SIFVGDLAVDVTDEMLLELFSNKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMT 262
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
+ G P+RV P+ + + P + + + RT+Y +D V++ +++
Sbjct: 263 EMNGVYCSTRPIRVGPATPRRSQGDSGSSPPRQSDVDSTNRTVYVGGLDPNVSEDELRKA 322
Query: 375 FESVCGEVYRLRLLGDYHHSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
F G++ +++ + FV+FV AE A+ LN G +G +R+S ++
Sbjct: 323 FAKY-GDLASVKIP----FGKQCGFVQFVNRADAEEALQGLN--GATIGKQAVRLSWGRS 375
Query: 432 PV 433
P
Sbjct: 376 PA 377
>gi|125549823|gb|EAY95645.1| hypothetical protein OsI_17510 [Oryza sativa Indica Group]
Length = 426
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 16/196 (8%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLR-- 297
R+N ++ +R++ T++V D+ VT+ L F V V ++ D ++
Sbjct: 165 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKG 224
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR---TEDEREMCA 354
+ F++F D E ARA + G + P+R+ P+ +P + E +
Sbjct: 225 YGFVKFGDPTEQARAMTEMNGMLCSSRPMRIGPAANKKTTGVQERVPNAQGAQSENDPNN 284
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAA 411
TI+ +D VT+ +K F + GEV +++ R FV++V AE A+A
Sbjct: 285 TTIFVGGLDPNVTEDVLKQVF-APYGEVVHVKI----PVGKRCGFVQYVNRPSAEQALAV 339
Query: 412 LNCSGVVLGSLPIRVS 427
L G ++G +R+S
Sbjct: 340 LQ--GTLIGGQNVRLS 353
>gi|115460682|ref|NP_001053941.1| Os04g0625800 [Oryza sativa Japonica Group]
gi|113565512|dbj|BAF15855.1| Os04g0625800 [Oryza sativa Japonica Group]
gi|215767966|dbj|BAH00195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 425
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 16/196 (8%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLR-- 297
R+N ++ +R++ T++V D+ VT+ L F V V ++ D ++
Sbjct: 164 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKG 223
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR---TEDEREMCA 354
+ F++F D E ARA + G + P+R+ P+ +P + E +
Sbjct: 224 YGFVKFGDPTEQARAMTEMNGMLCSSRPMRIGPAANKKTTGVQERVPNAQGAQSENDPNN 283
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAA 411
TI+ +D VT+ +K F + GEV +++ R FV++V AE A+A
Sbjct: 284 TTIFVGGLDPNVTEDVLKQVF-APYGEVVHVKI----PVGKRCGFVQYVNRPSAEQALAV 338
Query: 412 LNCSGVVLGSLPIRVS 427
L G ++G +R+S
Sbjct: 339 LQ--GTLIGGQNVRLS 352
>gi|39545835|emb|CAE04743.3| OSJNBb0060E08.6 [Oryza sativa Japonica Group]
gi|116309791|emb|CAH66831.1| OSIGBa0148A10.8 [Oryza sativa Indica Group]
Length = 414
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 16/196 (8%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLR-- 297
R+N ++ +R++ T++V D+ VT+ L F V V ++ D ++
Sbjct: 153 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKG 212
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR---TEDEREMCA 354
+ F++F D E ARA + G + P+R+ P+ +P + E +
Sbjct: 213 YGFVKFGDPTEQARAMTEMNGMLCSSRPMRIGPAANKKTTGVQERVPNAQGAQSENDPNN 272
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAA 411
TI+ +D VT+ +K F + GEV +++ R FV++V AE A+A
Sbjct: 273 TTIFVGGLDPNVTEDVLKQVF-APYGEVVHVKI----PVGKRCGFVQYVNRPSAEQALAV 327
Query: 412 LNCSGVVLGSLPIRVS 427
L G ++G +R+S
Sbjct: 328 LQ--GTLIGGQNVRLS 341
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L +F G V R+C D + L +A++ + + A+ RA
Sbjct: 174 SLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQ 233
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L +++ R++ S+ R R+ I+ N+D+ + + F
Sbjct: 234 LNYSLIKNKACRIMWSQ------------RDPSLRKTGQGNIFIKNLDETIDNKALHDTF 281
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+ G++ ++ D H +++ FV +V ESA AA+
Sbjct: 282 -AAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAI 318
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
+YV ++D + +E+L F G + C++ D + F F+ F+ E +A +
Sbjct: 459 LYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMN 518
Query: 318 GTMLGFYPVRV 328
G MLG P+ V
Sbjct: 519 GKMLGSKPLYV 529
>gi|290996979|ref|XP_002681059.1| RRM domain-containing protein [Naegleria gruberi]
gi|284094682|gb|EFC48315.1| RRM domain-containing protein [Naegleria gruberi]
Length = 285
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 18/177 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNL 316
TV + ++ +++ + G +V I D R + F+EF DE E A+ ++L
Sbjct: 52 TVMLRNLSYNTSDDSIKEKLSKYGSIVRVNIPTDERGRSRGYGFVEF-DEVEAAQKVVDL 110
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+ V++ SK F RT ++ N+ + + D++ FE
Sbjct: 111 KAMEMDGREVQLQQSK-----ARDEFSGRT--------TQVFVGNLPESAEEQDIRELFE 157
Query: 377 SVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
+ CGE+ +R+ D + AFV+F + S AAL G + IRV+ K+
Sbjct: 158 T-CGEIEEVRMPKDKDTEKKKGFAFVQFRDSSSVKAALEKDGSEFKGVSIRVNEEKS 213
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 251 REEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDE 306
R+E RT V+V ++ + E+ + LF CG++ + R+ D ++ + FAF++F D
Sbjct: 128 RDEFSGRTTQVFVGNLPESAEEQDIRELFETCGEIEEVRMPKDKDTEKKKGFAFVQFRD- 186
Query: 307 AEGARAALNLAGTMLGFYPVRVLPSKTA 334
+ +AAL G+ +RV K+
Sbjct: 187 SSSVKAALEKDGSEFKGVSIRVNEEKST 214
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 23/180 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D N + +
Sbjct: 132 RIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYG 191
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRTEDEREMCAR- 355
F+ + + A+A ++ G +L V V +P K R EM A
Sbjct: 192 FVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKD-----------RQSKFEEMKANF 240
Query: 356 -TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y NI + T+ D + FE G+V L D +R FV F ESA A++
Sbjct: 241 TNVYVKNISPEATEDDFRQLFEQY-GDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAVD 299
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF G V R+C D + L +A++ + A+G +A
Sbjct: 61 SLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 120
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 121 LNYTIIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDVAIDNKALHDTF 168
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +++ FV + E+A A+ + +G++L
Sbjct: 169 -AAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLL 213
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 23/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D N + +
Sbjct: 131 RIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYG 190
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRTEDEREMCAR- 355
F+ + + A+A ++ G +L V V +P K R EM A
Sbjct: 191 FVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKD-----------RQSKFEEMKANF 239
Query: 356 -TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y NI VT D + FE G+V L D TR FV F E+A A+
Sbjct: 240 TNVYVKNIAPDVTDEDFRQLFEKF-GDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAV 297
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 17/174 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF G V R+C D + L +A++ + +G +A
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEE 119
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 120 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDVAIDNKALHDTF 167
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVS 427
+ G + ++ D + +++ FV + E+A A+ + +G++L + V
Sbjct: 168 -AAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVG 220
>gi|289724641|gb|ADD18299.1| poly-U binding splicing factor [Glossina morsitans morsitans]
Length = 611
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 27/219 (12%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ ++++ S+ + QR++ + VYV I ++ E+ + A F+ G +
Sbjct: 70 VLMKQTLAHQQQQLASQRTQVQRQQALALMCRVYVGSISFELKEDTIRAAFLPFGPIKSI 129
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + EGA+ AL + G ++G ++V P+ +
Sbjct: 130 NMSWDPITQKHKGFAFVEY-EIPEGAQLALEQMNGALMGGRNIKV---------GRPSNM 179
Query: 344 PRTE---DEREMCART---IYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDYHHSTR 396
P+ + DE + A++ IY +I +++ D+K FE+ +Y +L H
Sbjct: 180 PQAQQVIDEIQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAPGTSLHTHKG 239
Query: 397 IAFVEFV---MAESAIAALNCSGVVLGSLPIRVSPSKTP 432
F+E+ + AIA++N LG +RV S TP
Sbjct: 240 YGFIEYANKQAMDEAIASMNL--FDLGGQLLRVGRSITP 276
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGA 310
E + ++YV ++D V+E L +F G V R+C D + L +A++ F D G
Sbjct: 39 ENVTASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGK 98
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
A L T + P R++ S+ R R+ + I+ N+ + D
Sbjct: 99 TAIEKLNYTAIKGRPCRIMWSQ------------RDPSMRKKGSGNIFIKNLHPDI---D 143
Query: 371 VKLFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVLGSLPIRV 426
K +E SV G + ++ D ++ FV F E+A A++ +G++L + V
Sbjct: 144 NKTLYETFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYV 203
Query: 427 SP 428
+P
Sbjct: 204 AP 205
>gi|326523691|dbj|BAJ93016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEG 309
EE+ R +YV +I + VT ++L+A+F G VV + D S RF F+ + E
Sbjct: 64 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 123
Query: 310 ARAALNLAGTMLGFYPVRV------LPSKTAIAPVN-PTFLPRTEDEREMCARTIYCTNI 362
A A +L T +G ++V LP+ A AP + P+F+ D + +Y N+
Sbjct: 124 AAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFV----DSQ----YKVYVGNL 175
Query: 363 DKKVTQADVKLFFESVCGEV 382
KKVT +K FF S GEV
Sbjct: 176 AKKVTTEVLKNFF-SEKGEV 194
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVK-LFFESVCGEVYR 384
+Y N ++V +K LF +++ +V R
Sbjct: 192 NVYIKNFGEEVDDESLKELFSKTLSVKVMR 221
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|125775095|ref|XP_001358799.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|195144954|ref|XP_002013461.1| GL24152 [Drosophila persimilis]
gi|54638540|gb|EAL27942.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|194102404|gb|EDW24447.1| GL24152 [Drosophila persimilis]
Length = 464
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 18/189 (9%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
+E +T+YV ++D V+EE L ALF G V +C+I +P + +AFIE+++ + A
Sbjct: 2 DESQPKTLYVGNLDSSVSEELLIALFGTMGAVKNCKIIREPGND-PYAFIEYSN-YQAAS 59
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AL L + + + A +P N P+T+ I+ ++ ++ +
Sbjct: 60 TALTAMNKRL--FLEKEIKVNWATSPGN---QPKTDISSH---HHIFVGDLSPEIETETL 111
Query: 372 KLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRV 426
+ F GE+ R++ D S AFV FV AE+AI A+N G +GS IR
Sbjct: 112 REAFAPF-GEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRT 168
Query: 427 SPSKTPVRP 435
+ S + P
Sbjct: 169 NWSTRKLPP 177
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
+ S G + +++ D + S FV F E+A A++ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D + ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N +++ +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEMDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 21/187 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D + L +A++ F A+ RA
Sbjct: 20 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 79
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R A I+ N+DK + + F
Sbjct: 80 MNFDVMYGKPIRIMWSQ------------RDPSMRRSGAGNIFIKNLDKSIDNKAIYDTF 127
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPSKTPV 433
S+ G + ++ D +++ FV F ESA A+ +G++L + V
Sbjct: 128 -SMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVG----KF 182
Query: 434 RPRAPRL 440
+PRA R+
Sbjct: 183 QPRAARM 189
>gi|321464387|gb|EFX75395.1| sex-lethal protein variant 2 [Daphnia pulex]
Length = 297
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAA 313
R + ++ + Q +TE +L +FV G V +C+I D F F+ + + RA
Sbjct: 26 RTNLIINYLPQNLTESELFKMFVTIGTVTNCKIMRDFRTGYSYGFGFVNYQKADDAIRAI 85
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L G + ++V ++ P ED +E +Y TN+ + VT+ ++
Sbjct: 86 QTLNGLQIQNKRIKVSYAR-----------PPGEDRKET---NLYVTNLPRDVTEDELTN 131
Query: 374 FFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMAESAIAAL 412
F S G + ++ LL D +AFV F E A+AA+
Sbjct: 132 IF-SAHGNIVQMNLLKDKITGMPRGVAFVRFDKREEALAAI 171
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 25/179 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEAEGARAA 313
++YV D+ VTE L +F G V R+C D SV R +A++ + + A
Sbjct: 28 SLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRD--SVTRKSLGYAYVNYYSTQDAQEAL 85
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
NL + +P R++ S R R A I+ N+DK + D K
Sbjct: 86 ENLNYIEIKGHPTRIMWSN------------RDPSLRRSGAGNIFVKNLDKSI---DTKS 130
Query: 374 FFESVC--GEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
+++ G + ++ D S R FV + ESA A+ +G+++G + V+P
Sbjct: 131 LYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAP 189
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFT 304
+++AQ ++ + +Y+ ++D +E L LF G + ++ D N+ R F F+ FT
Sbjct: 295 STMAQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFT 354
Query: 305 D--EAEGARAALNL 316
+ EA A AA++L
Sbjct: 355 NPQEATKAIAAMHL 368
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 29/181 (16%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEF--TDEAEGAR 311
++YV D+ VTE L +F G V R+C D SV R +A++ + T +AE A
Sbjct: 28 SLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRD--SVTRKSLGYAYVNYYSTQDAEAAL 85
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
+LN + +P R++ S R R A I+ N+DK + D
Sbjct: 86 ESLNY--IEIKGHPTRIMWSN------------RDPSLRRSGAGNIFVKNLDKSI---DT 128
Query: 372 KLFFESVC--GEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVS 427
K +++ G + ++ D S R FV + ESA A+ +G+++G + V+
Sbjct: 129 KSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVA 188
Query: 428 P 428
P
Sbjct: 189 P 189
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N +++ +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEMDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 34 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 93
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 94 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 138
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 139 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 185
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 105 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 164
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 165 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 213
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 214 NVYIKNFGEEVDDDNLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 270
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|307211749|gb|EFN87744.1| RNA-binding protein 34 [Harpegnathos saltator]
Length = 555
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 37/208 (17%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCR-----------------IC 289
S ++EE+ R+T+++ +I ++ L +F G + + R I
Sbjct: 257 SPEEQEEVDRKTIFIDNIPKETKITTLKKVFGQYGPIDNLRFRNIVPKNPKISKKVAAIK 316
Query: 290 GD--PNSVLRFAFIEFTDEAEGARAALNLAGTML-GFYPVRVLPSKTAIAPVNPTFLPRT 346
D P V A+I++ E E A+ AL++ G G Y VN + +
Sbjct: 317 QDIHPKIVTVVAYIKYKSE-ESAKKALSMNGKKFEGNY-------------VNVKIVAKL 362
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E+ ++I+ N+ + D+ F S CGE+ +RL+ D + +V F
Sbjct: 363 GQEKHNIKKSIFIGNLKFGMNTNDIWENF-SKCGEIESVRLIRDKKTGQTRGFGYVNFKS 421
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTP 432
++ AL GV + + P+RV + P
Sbjct: 422 EDAVTLALKLDGVEINNRPVRVRTCRAP 449
>gi|224104133|ref|XP_002313332.1| predicted protein [Populus trichocarpa]
gi|222849740|gb|EEE87287.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 34/217 (15%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDP 292
SFG G+RR ++ +++V D+ VT+ L F V V ++ DP
Sbjct: 99 SFGIGERRPDAGP---------EHSIFVGDLAPDVTDYLLQETFRVHYPSVRGAKVVTDP 149
Query: 293 NS--VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV---LPSKTA------------- 334
N+ + F++F DE E RA + G P+R+ P KT
Sbjct: 150 NTGRSKGYGFVKFADENERNRAMTEMNGVFCSTRPMRISMATPKKTTSFQQQYAVPKAFY 209
Query: 335 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHS 394
AP + + ++ TI+ N+D T+ D++ F + GE+ +++
Sbjct: 210 PAPAYTAPVQVVSADGDVTNTTIFVGNLDPNATEEDLRQTFLQL-GEIASVKIPA----G 264
Query: 395 TRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430
FV+F SA A+ G V+G P+R+S K
Sbjct: 265 RGCGFVQFATRTSAEEAIQRMQGHVIGQQPVRISWGK 301
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 20/175 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
+ S G + +++ + S FV F E A A+ +G ++GS P+ V+
Sbjct: 117 DTFSAFGNILSCKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 171
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ + F F
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVMLEDGRSKGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRV 328
+ F+ E +A + G ++G P+ V
Sbjct: 143 VCFSSPEEATKAVTEMNGRIVGSKPLYV 170
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|304798|gb|AAA28828.1| polyadenylate-binding protein [Drosophila melanogaster]
gi|304800|gb|AAA02941.1| polyadenylate-binding protein [Drosophila melanogaster]
Length = 465
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 17/187 (9%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T+YV ++D V+E+ L ALF G V C+I +P + +AFIE+++ + A AL
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSN-YQAATTALTA 64
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
L + + + A +P N P+T+ I+ ++ ++ ++ F
Sbjct: 65 MNKRL--FLEKEIKVNWATSPGN---QPKTDISSH---HHIFVGDLSPEIETETLREAFA 116
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
GE+ R++ D H S AFV FV AE+AI A+N + S+ S K
Sbjct: 117 PF-GEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNRQWIASRSIRTNWSTRKL 175
Query: 432 PVRPRAP 438
P PR P
Sbjct: 176 P-PPREP 181
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 25/197 (12%)
Query: 243 NSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAF 300
+S + A ++ ++YV ++D V+E L LF G V R+C D + L +A+
Sbjct: 33 SSESQQAGDNDVTSTSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAY 92
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F+D G +A L T + R++ S+ R R+ I+
Sbjct: 93 VNFSDHEAGKQAIEKLNYTPIKGKLCRIMWSQ------------RDPSLRKKGHGNIFIK 140
Query: 361 NIDKKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR----IAFVEFVMAESAIAALNC 414
N+++ + D K F+ SV G + ++ D ++ + F E A AI ALN
Sbjct: 141 NLNQDI---DNKALFDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALN- 196
Query: 415 SGVVLGSLPIRVSPSKT 431
G++L I V+P T
Sbjct: 197 -GMLLNGQEIYVAPHLT 212
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 25/179 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEAEGARAA 313
++YV D+ VTE L +F G V R+C D SV R +A++ + + A
Sbjct: 28 SLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRD--SVTRKSLGYAYVNYYSTQDAEAAL 85
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
NL + +P R++ S R R+ A I+ N+DK + D K
Sbjct: 86 ENLNYIEIKGHPTRIMWSN------------RDPSLRKSGAGNIFVKNLDKSI---DTKS 130
Query: 374 FFESVC--GEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
+++ G + ++ D S R FV + ESA A+ +G+++G + V+P
Sbjct: 131 LYDTFAHFGTILSCKVAVDSTGASRRYGFVHYESEESAREAIEKVNGMLIGGKKVEVAP 189
>gi|315434255|ref|NP_001186793.1| BCL2L2-PABPN1 protein [Homo sapiens]
gi|332223067|ref|XP_003260692.1| PREDICTED: polyadenylate-binding protein 2-like isoform 1 [Nomascus
leucogenys]
gi|338717165|ref|XP_003363601.1| PREDICTED: polyadenylate-binding protein 2-like isoform 2 [Equus
caballus]
gi|397473278|ref|XP_003808142.1| PREDICTED: polyadenylate-binding protein 2 [Pan paniscus]
gi|403264162|ref|XP_003924360.1| PREDICTED: polyadenylate-binding protein 2 [Saimiri boliviensis
boliviensis]
gi|410961928|ref|XP_003987530.1| PREDICTED: polyadenylate-binding protein 2 isoform 3 [Felis catus]
gi|426232740|ref|XP_004010379.1| PREDICTED: polyadenylate-binding protein 2 [Ovis aries]
gi|410267786|gb|JAA21859.1| BCL2L2-PABPN1 readthrough [Pan troglodytes]
gi|417399112|gb|JAA46586.1| Putative splicing factor rnps1 sr protein superfamily [Desmodus
rotundus]
Length = 333
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 189 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 245
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 246 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 276
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 191 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 249
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 250 KESVRTSLALDESLFRGRQIKVIPKRT 276
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+D+ + D K +
Sbjct: 72 MNFEVIKGRPIRIMWSQ------------RDPGLRKSGVGNVFIKNLDESI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLL 163
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLL 163
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAANKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +++ F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLRELF-SQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAV 248
>gi|212722596|ref|NP_001131852.1| uncharacterized protein LOC100193230 [Zea mays]
gi|194692726|gb|ACF80447.1| unknown [Zea mays]
gi|413919585|gb|AFW59517.1| hypothetical protein ZEAMMB73_768040 [Zea mays]
Length = 434
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLR-- 297
R+N ++ +R++ T++V D+ VT+ L F V V ++ D ++
Sbjct: 160 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKG 219
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP--SKTAIAPVNPTFLPRT---EDEREM 352
+ F++F D E ARA + G P+R+ P S+ V +P + + E +
Sbjct: 220 YGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAASRKNAGGVVQERVPNSQGAQSENDP 279
Query: 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA-IAA 411
TI+ +D VT+ +K F S GEV +++ R FV+FV SA A
Sbjct: 280 NNTTIFVGGLDPNVTEDVLKQAF-SPYGEVIHVKI----PVGKRCGFVQFVTRPSAEQAL 334
Query: 412 LNCSGVVLGSLPIRVS 427
L G ++G+ +R+S
Sbjct: 335 LMLQGALIGAQNVRLS 350
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKDLF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|413919584|gb|AFW59516.1| hypothetical protein ZEAMMB73_768040, partial [Zea mays]
Length = 428
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 16/197 (8%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLR-- 297
R+N ++ +R++ T++V D+ VT+ L F V V ++ D +R
Sbjct: 160 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTD-KLTMRTK 218
Query: 298 -FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP--SKTAIAPVNPTFLPRT---EDERE 351
+ F++F D E ARA + G P+R+ P S+ V +P + + E +
Sbjct: 219 GYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAASRKNAGGVVQERVPNSQGAQSEND 278
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA-IA 410
TI+ +D VT+ +K F S GEV +++ R FV+FV SA A
Sbjct: 279 PNNTTIFVGGLDPNVTEDVLKQAF-SPYGEVIHVKI----PVGKRCGFVQFVTRPSAEQA 333
Query: 411 ALNCSGVVLGSLPIRVS 427
L G ++G+ +R+S
Sbjct: 334 LLMLQGALIGAQNVRLS 350
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 8/175 (4%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
+Y+ ++ + TEE L F G V + DP + R FAF+ F D RA L
Sbjct: 191 IYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELN 250
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTI--YCTNIDKKVTQADV-KLF 374
G LG V V + +FL + +ER + I Y N+D V ++ KLF
Sbjct: 251 GRKLGDKEVYV--GRAQKKSERESFLRKLREERAQKYQGINLYIKNLDDTVNDEELHKLF 308
Query: 375 FESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
G++ +++ D ++R FV + E A A++ +G ++ + PI V+
Sbjct: 309 SALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYVA 363
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 20/160 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D++ VTE L +F G V R+C D + L +A++ F + + RA
Sbjct: 11 SLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAERALDT 70
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S +P+ R+ I+ N+DK + D K +
Sbjct: 71 LNYTLIKGRPCRIMWSHR-----DPSI-------RKSGQGNIFIKNLDKSI---DNKALY 115
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+ S G + +++ D +++ FV + +E+A +A+
Sbjct: 116 DTFSAFGNILSCKVVTDGKGNSKGYGFVHYETSEAADSAI 155
>gi|255550678|ref|XP_002516388.1| splicing factor, putative [Ricinus communis]
gi|223544486|gb|EEF46005.1| splicing factor, putative [Ricinus communis]
Length = 609
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAA 313
+RTV+ I + E + F G+V D R+ D NS +IEF D A
Sbjct: 225 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYD-VMSVPMA 283
Query: 314 LNLAGTMLGFYPVRVLPSKT------AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367
+ L+G L PV V PS+ + VN P + AR +Y N+ +T
Sbjct: 284 IALSGQPLLGQPVMVKPSEAEKNLVQSTTTVNAGSGPYS-----GGARRLYVGNLHFNIT 338
Query: 368 QADVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAALNCSG-VVLGSLPIR 425
+ ++ FE G V ++L L + H FV+F E A ALN +G V + PI+
Sbjct: 339 EDQLRQVFEPF-GIVELVQLPLDETGHCKGFGFVQFARLEDAKNALNLNGQVEIAGRPIK 397
Query: 426 VS 427
VS
Sbjct: 398 VS 399
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 21/189 (11%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEF 303
T+ + E + ++YV D+D V+E L +F G V R+C D + L +A++ F
Sbjct: 24 TNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNF 83
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNID 363
D + A+ A+ L F P++ + + +P+ R+ A I+ N+
Sbjct: 84 NDH-DAAKTAIE----KLNFTPIKGKLCRIMWSQRDPSL-------RKKGAGNIFIKNLH 131
Query: 364 KKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVL 419
+ D K ++ SV G + ++ D ++ +V F ESA A++ +G++L
Sbjct: 132 PDI---DNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLL 188
Query: 420 GSLPIRVSP 428
I V P
Sbjct: 189 NGQEIYVGP 197
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|313240198|emb|CBY32547.1| unnamed protein product [Oikopleura dioica]
Length = 307
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 26/189 (13%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFT 304
SL +R + TVYV +D++VTE LA LF+ G VV+C + D + + F+EF
Sbjct: 3 SLTERNQ--DATVYVGGLDEKVTEHLLAELFIQVGPVVNCHMPKDRVTQTHQGYGFVEFL 60
Query: 305 DEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDK 364
E + A L L PVRV +K + + + ++ N+D
Sbjct: 61 SEDDADYAIKILNMIKLFGKPVRV--NKAS-----------SHQKNLDVGANLFIGNLDP 107
Query: 365 KVTQADVKLFFES-----VCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVV 418
++ D KL +++ V + ++ D +S AF+ + E+A AAL +G
Sbjct: 108 EI---DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINYSSFEAADAALEAMNGQY 164
Query: 419 LGSLPIRVS 427
L + PI +S
Sbjct: 165 LCNRPITIS 173
>gi|313237737|emb|CBY12875.1| unnamed protein product [Oikopleura dioica]
Length = 307
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 26/189 (13%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFT 304
SL +R + TVYV +D++VTE LA LF+ G VV+C + D + + F+EF
Sbjct: 3 SLTERNQ--DATVYVGGLDEKVTEHLLAELFIQVGPVVNCHMPKDRVTQTHQGYGFVEFL 60
Query: 305 DEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDK 364
E + A L L PVRV +K + + + ++ N+D
Sbjct: 61 SEDDADYAIKILNMIKLFGKPVRV--NKAS-----------SHQKNLDVGANLFIGNLDP 107
Query: 365 KVTQADVKLFFES-----VCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVV 418
++ D KL +++ V + ++ D +S AF+ + E+A AAL +G
Sbjct: 108 EI---DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINYSSFEAADAALEAMNGQY 164
Query: 419 LGSLPIRVS 427
L + PI +S
Sbjct: 165 LCNRPITIS 173
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 248
>gi|242039427|ref|XP_002467108.1| hypothetical protein SORBIDRAFT_01g019710 [Sorghum bicolor]
gi|241920962|gb|EER94106.1| hypothetical protein SORBIDRAFT_01g019710 [Sorghum bicolor]
Length = 664
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEA 307
+Q + +T++V ++ + EQ+ F G+VVD R+ D S + +EF A
Sbjct: 405 SQSQATGSKTIFVGNLAYSIEREQVKEFFEEAGEVVDIRLSTFDDGSFKGYGHVEFA-TA 463
Query: 308 EGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE----REMCAR---TIYCT 360
E A+ AL G L +R+ +A + P + + R+ R T++
Sbjct: 464 EAAQKALEFGGRDLMGRSLRI-----DLAVERGAYTPNSGKDNGSFRKSAQRSGNTVFIK 518
Query: 361 NIDKKVTQADVKLFFES---VCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNCS 415
D V + ++ E CG++ R+ + DY S +A+++F +S A +
Sbjct: 519 GFDTSVGEDQIRSALEEHFRSCGDITRISIPKDYDTGASKGMAYMDFKDPDSLNKAYEMN 578
Query: 416 GVVLGSLPIRVSPSK 430
G LG + V +K
Sbjct: 579 GTYLGDYSLYVDEAK 593
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L +F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S R R+ I+ N++ + D K +
Sbjct: 72 MNFEVIKGQPIRIMWSH------------RDPGLRKSGMGNIFIKNLENSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ + H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLL 163
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 18/248 (7%)
Query: 189 AKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAV---RRKKSFGQGKRRMNSR 245
+K N HG GF GF + F H A +N + RK G K R
Sbjct: 128 SKVVYNEHGSRGF--GF-----VHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE 180
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFT 304
L R + +YV ++ V E++L LF G + ++ D N R F F+ F
Sbjct: 181 AELGARA-LGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFE 239
Query: 305 DEAEGARAALNLAGTMLG---FYPVRVLPSKTAIAPVNPTFLP-RTEDEREMCARTIYCT 360
E +A ++ G + Y R + + F + E + +Y
Sbjct: 240 KHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVK 299
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
N+D + +K F S G + +++ + HS FV F E A A+ +G ++
Sbjct: 300 NLDDSINDERLKEVF-STYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 420 GSLPIRVS 427
G+ P+ V+
Sbjct: 359 GTKPLYVA 366
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 165 DMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNV- 223
D + LQ+LFS+ M S+ ++N GF F N F H V
Sbjct: 203 DEQRLQDLFSQFGNMQ------SVKVMRDSNGQSRGFG---FVN----FEKHEEAQKAVD 249
Query: 224 --NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQ 272
N + G+ ++R ++ L +R E +++ +YV ++D + +E+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 273 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
L +F G + ++ + + F F+ F+ E +A + G ++G P+ V
Sbjct: 310 LKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF G V R+C D + L +A++ F + +G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+M ++ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
S G++ ++ D ++ FV F ESA AA+ + +G++L
Sbjct: 189 -SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLL 233
>gi|403412344|emb|CCL99044.1| predicted protein [Fibroporia radiculosa]
Length = 599
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGE--VYRLRL 387
PS + AP++ P E + AR+++ + + ++T D+ FFE GE V R+
Sbjct: 243 PSPSYEAPLDDMLNPDEPREDDSEARSVFVSQLAARLTARDLGYFFEDKLGEGSVMDSRI 302
Query: 388 LGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
+ D S I +VEF E AL SG V+ LPI++
Sbjct: 303 VTDRISRRSKGIGYVEFRSVELVDKALGLSGTVVMGLPIQI 343
>gi|417398942|gb|JAA46504.1| Putative splicing factor rnps1 sr protein superfamily [Desmodus
rotundus]
Length = 323
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 189 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 245
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 246 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 276
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 191 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 249
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 250 KESVRTSLALDESLFRGRQIKVIPKRT 276
>gi|255582384|ref|XP_002531981.1| Protein gar2, putative [Ricinus communis]
gi|223528378|gb|EEF30417.1| Protein gar2, putative [Ricinus communis]
Length = 436
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQV--VDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
VYV I TEE + + F GCG + VDC D A I F EA A+ AL L
Sbjct: 183 VYVGGIPYYSTEEDIRSYFEGCGTITEVDCMTFPDSGKFRGIAIIGFKTEA-AAKRALAL 241
Query: 317 AGTMLGFYPVRVLPSKTA---IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
G+ +G + +++ P KT A F P+ + IY N+ +T+ D++
Sbjct: 242 DGSDMGGFFLKIQPYKTTRTFQAKKVSDFAPKIVEGY----NRIYVGNLSWDITEEDLRK 297
Query: 374 FF 375
FF
Sbjct: 298 FF 299
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L +F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S R R+ I+ N++ + D K +
Sbjct: 72 MNFEVIKGQPIRIMWSH------------RDPGLRKSGMGNIFIKNLENSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ + H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLL 163
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 18/248 (7%)
Query: 189 AKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAV---RRKKSFGQGKRRMNSR 245
+K N HG GF GF + F H A +N + RK G K R
Sbjct: 128 SKVVYNEHGSRGF--GF-----VHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE 180
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFT 304
L R + +YV ++ V E++L LF G + ++ D N R F F+ F
Sbjct: 181 AELGARA-LGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFE 239
Query: 305 DEAEGARAALNLAGTMLG---FYPVRVLPSKTAIAPVNPTFLP-RTEDEREMCARTIYCT 360
E +A ++ G + Y R + + F + E + +Y
Sbjct: 240 KHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVK 299
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
N+D + +K F S G + +++ + HS FV F E A A+ +G ++
Sbjct: 300 NLDDSINDERLKEVF-STYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 420 GSLPIRVS 427
G+ P+ V+
Sbjct: 359 GTKPLYVA 366
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 165 DMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNV- 223
D + LQ+LFS+ M S+ ++N GF F N F H V
Sbjct: 203 DEQRLQDLFSQFGNMQ------SVKVMRDSNGQSRGFG---FVN----FEKHEEAQKAVD 249
Query: 224 --NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQ 272
N + G+ ++R ++ L +R E +++ +YV ++D + +E+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 273 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
L +F G + ++ + + F F+ F+ E +A + G ++G P+ V
Sbjct: 310 LKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|357166074|ref|XP_003580589.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Brachypodium distachyon]
Length = 426
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 16/202 (7%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLR-- 297
R+N ++ +R++ T++V D+ VT+ L F V V ++ D +R
Sbjct: 162 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTD-KMTMRSK 220
Query: 298 -FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT-----EDERE 351
+ F++F D E ARA + G P+R+ P+ +P T + + +
Sbjct: 221 GYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPNTNTQGAQSDND 280
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
TI+ +D VT+ +K F + GEV +++ R FV+FV SA A
Sbjct: 281 PNNTTIFVGGLDPNVTEDALKQVF-APYGEVIHVKI----PVGKRCGFVQFVNRPSAEQA 335
Query: 412 LN-CSGVVLGSLPIRVSPSKTP 432
L G +G +R+S ++P
Sbjct: 336 LQMLQGTPIGGQNVRLSWGRSP 357
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 232 KKSFGQGKRRMNSRTSLAQRE-EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG 290
+K+ G +R N+ T AQ + + T++V +D VTE+ L +F G+V+ +I
Sbjct: 258 RKTTGVQERVPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVIHVKIP- 316
Query: 291 DPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
R F++F + +A L GT +G VR+
Sbjct: 317 ---VGKRCGFVQFVNRPSAEQALQMLQGTPIGGQNVRL 351
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARA 312
+ ++YV D+D V+E QL LF GQV+ R+C D L +A++ + + + RA
Sbjct: 2 VSTSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRA 61
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
+L F PV + + +P+ R+ I+ N+D+ + +
Sbjct: 62 L-----ELLNFTPVNGKAVRIMFSHRDPSI-------RKSGTANIFIKNLDRAIDNKALH 109
Query: 373 LFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
F S G + ++ D + S FV+F ESA A++ +G+++ + V P
Sbjct: 110 DTFVSF-GNILSCKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGP 166
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
+ S G + +++ D + S FV F E+A A++ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K +F G ++++ D H +R FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQY-GAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVD 249
>gi|449691485|ref|XP_002170081.2| PREDICTED: uncharacterized protein LOC100212876, partial [Hydra
magnipapillata]
Length = 312
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC-GDPNSVLRFAFIEFTDEAEGARAA 313
IRRTV+V +I +T +QL A F G G+V R+C GD ++AF+EFT + A
Sbjct: 23 IRRTVFVQNIPPDITADQLMAFFSGVGEVKYLRLCKGDSG---KYAFVEFT-AIDSVPTA 78
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE 347
L G + G ++V SK +P P +E
Sbjct: 79 LQYNGVLFGGRCLKVDYSK------HPIIKPESE 106
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL-GDYHHSTRIAFVEFVMAESAIAALN 413
RT++ NI +T + FF V GEV LRL GD S + AFVEF +S AL
Sbjct: 25 RTVFVQNIPPDITADQLMAFFSGV-GEVKYLRLCKGD---SGKYAFVEFTAIDSVPTALQ 80
Query: 414 CSGVVLGSLPIRVSPSKTP-VRPRAPRLPM 442
+GV+ G ++V SK P ++P + ++ +
Sbjct: 81 YNGVLFGGRCLKVDYSKHPIIKPESEQIAI 110
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N + +K F S G+ ++++ D ++ FV F E A A+
Sbjct: 192 NVYIKNFGDDMDDERLKELF-SKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAV 248
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N + +K F S G+ ++++ D ++ FV F E A A+
Sbjct: 192 NVYIKNFGDDMDDGRLKELF-SKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAV 248
>gi|125591671|gb|EAZ32021.1| hypothetical protein OsJ_16200 [Oryza sativa Japonica Group]
Length = 728
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 27/195 (13%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
+T++V ++ V +EQ+ F G+VVD R + R F +EF AE A+ AL
Sbjct: 470 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFAT-AEAAKKALE 528
Query: 316 LAGTMLGFYPVR--VLPSKTAIAPV----NPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
LAG L PVR + + A P N +F + + TI+ D T
Sbjct: 529 LAGHDLMGRPVRLDLARERGAYTPGSGRDNSSF----KKPAQSSGNTIFIKGFD---TSL 581
Query: 370 DVKLFFESV------CGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNCSGVVLGS 421
D+ S+ CGE+ R+ + DY S +A+++F S A +G LG
Sbjct: 582 DIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYELNGSDLGG 641
Query: 422 LPIRVSPSKTPVRPR 436
+ V + RPR
Sbjct: 642 YSLYVDEA----RPR 652
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAV 248
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLL 163
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAANKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +++ F S G+ ++++ D ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDENLRELF-SQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAV 248
>gi|115460618|ref|NP_001053909.1| Os04g0620700 [Oryza sativa Japonica Group]
gi|75327488|sp|Q7XTT4.2|NUCL2_ORYSJ RecName: Full=Nucleolin 2; AltName: Full=Protein NUCLEOLIN LIKE 2
gi|38344339|emb|CAD41755.2| OSJNBa0058K23.21 [Oryza sativa Japonica Group]
gi|113565480|dbj|BAF15823.1| Os04g0620700 [Oryza sativa Japonica Group]
gi|215737156|dbj|BAG96085.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 707
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 23/185 (12%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
+T++V ++ V +EQ+ F G+VVD R + R F +EF AE A+ AL
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFAT-AEAAKKALE 507
Query: 316 LAGTMLGFYPVR--VLPSKTAIAPV----NPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
LAG L PVR + + A P N +F + + TI+ D T
Sbjct: 508 LAGHDLMGRPVRLDLARERGAYTPGSGRDNSSF----KKPAQSSGNTIFIKGFD---TSL 560
Query: 370 DVKLFFESV------CGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNCSGVVLGS 421
D+ S+ CGE+ R+ + DY S +A+++F S A +G LG
Sbjct: 561 DIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYELNGSDLGG 620
Query: 422 LPIRV 426
+ V
Sbjct: 621 YSLYV 625
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 15/180 (8%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEF--TDEAEGARAALN 315
VYV ++ + T E L LF G + +I D N + RF F+ F +D A A LN
Sbjct: 202 VYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLN 261
Query: 316 LAGTMLG--FYPVRVLPSKTAIAPVNPTF----LPRTEDEREMCARTIYCTNIDKKVTQA 369
+ T G + R A + F L R E + +Y NIDK + +
Sbjct: 262 GSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYE---KFQGANLYLKNIDKSLNEE 318
Query: 370 DVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
+K F S G + +++ D ++ + FV F E A A++ +G ++G P+ VS
Sbjct: 319 KLKELF-SEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVS 377
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 20/160 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ V + QL LF V+ R+C D S L + ++ +++ + A A N
Sbjct: 26 SLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMEN 85
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L L P+R++ F R R+ ++ N++ T D K
Sbjct: 86 LNYVPLNGKPIRIM------------FSHRDPLIRKTGFANLFIKNLE---TSIDNKALH 130
Query: 376 E--SVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL 412
E SV G V ++ D + HS FV+F +SA A+
Sbjct: 131 ETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAI 170
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 248 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDE 306
L + E+ +Y+ +ID+ + EE+L LF G + C++ D + F+ FT
Sbjct: 295 LKRYEKFQGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTP 354
Query: 307 AEGARAALNLAGTMLGFYPVRV 328
E ++A + G ++G PV V
Sbjct: 355 EEASKAIDEMNGKIIGQKPVYV 376
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF G V R+C D + L +A++ F + +G +A
Sbjct: 67 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 126
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+M ++ N+D + + F
Sbjct: 127 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 174
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
S G++ ++ D ++ FV F ESA AA+ + +G++L
Sbjct: 175 -SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLL 219
>gi|449454219|ref|XP_004144853.1| PREDICTED: RNA-binding protein 39-like [Cucumis sativus]
gi|449506986|ref|XP_004162902.1| PREDICTED: RNA-binding protein 39-like [Cucumis sativus]
Length = 562
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 13/201 (6%)
Query: 238 GKRRMNSRTSLAQRE---EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 294
G+R + + A+ E E +RTV+ I + TE + F G+V D R+ D NS
Sbjct: 156 GRRYKDKKDETAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNS 215
Query: 295 --VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREM 352
++EF D A A+ L+G +L PV V PS+ V T
Sbjct: 216 RRSKGVGYVEFVD-AMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMG 274
Query: 353 ----CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAES 407
AR +Y N+ +T+ +++ F G V +++ + + H F++F E
Sbjct: 275 PYSGGARRLYVGNLHPNITEDNLRQVF-GAFGTVELVQMPVDESGHCKGFGFIQFTRLED 333
Query: 408 AIAALNCSG-VVLGSLPIRVS 427
A AL+ +G + + I+VS
Sbjct: 334 ARNALSLNGQLEIAGRTIKVS 354
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 339 NPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTR 396
+ T P + ER+ RT++ I K T+ DV FF S G+V +RL+ D + S
Sbjct: 164 DETAEPEADPERDQ--RTVFAYQISLKATERDVYEFF-SRAGKVRDVRLIMDRNSRRSKG 220
Query: 397 IAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
+ +VEFV A S A+ SG +L S P+ V PS+
Sbjct: 221 VGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSE 254
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 63 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 107
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 108 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 154
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 74 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 133
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 134 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 182
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V ++K F S G+ ++++ D ++ FV + E A A+
Sbjct: 183 NVYIKNFGEEVDDDNLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAV 239
>gi|413920411|gb|AFW60343.1| putative oligouridylate binding protein [Zea mays]
Length = 425
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 21/174 (12%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
R+VYV +I QVT+ L +F G V C++ S F FI++ D A A L+L
Sbjct: 119 RSVYVGNIHLQVTDTVLQEVFQSIGPVEGCKLIRKEKS--SFGFIDYYDRRYAALAILSL 176
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
G L P++V + T+ PR + I+ ++ +VT A + FF
Sbjct: 177 NGRQLYGQPIKVNWAYTST--------PREDTSGHF---NIFVGDLCPEVTDATLFAFFS 225
Query: 377 --SVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 425
S C + R++ D S FV F + A +A+N +G LG+ IR
Sbjct: 226 GYSTCSDA---RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLNGKWLGNRQIR 276
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 24/169 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ +VTE QL +F G VV R+C D + L +A++ F + RA
Sbjct: 46 SLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAERALDT 105
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L +++ P R++ S+ R R+ ++ N+DK + D K
Sbjct: 106 LNYSLIRGKPCRIMWSQ------------RDPAVRKSGLGNVFIKNLDKTI---DNKALL 150
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVM---AESAIAALNCSGVVL 419
+ S G + +++ D + S FV + AE+AIA +N G+V+
Sbjct: 151 DTFSAFGNILSCKVVTDENGSKGYGFVHYETQEAAETAIAKVN--GMVI 197
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGA 310
+ + ++YV D++ V + QL LF G VV R+C D ++ L + ++ +++ + A
Sbjct: 26 QFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAA 85
Query: 311 RAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
RA L T L P+R++ S R R+ I+ N+DK +
Sbjct: 86 RALDVLNFTPLNGKPIRIMYSH------------RDPSIRKSGTGNIFIKNLDKGIDHKA 133
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRI-AFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
+ F S G + ++ D ++ FV+F E+A A++ +G++L + V P
Sbjct: 134 LHDTF-SAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGP 192
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+Y+ ++D + +++L LF G + C++ DPN + R + F+ F+ E +RA +
Sbjct: 314 LYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMN 373
Query: 318 GTMLGFYPVRV 328
M+ P+ V
Sbjct: 374 SKMVVSKPLYV 384
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D++ TE QL LF G VV R+C D L +A++ F+ + ARA
Sbjct: 44 SLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAIDV 103
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L ++ P+R+L S+ +PT R+ I+ N+DK + ++ F
Sbjct: 104 LNFQVVNGKPIRILYSQR-----DPTI-------RKSGVGNIFIKNLDKDIDTVALRDTF 151
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEF---VMAESAIAALNCSGVVLGSLPIRVSP 428
G + ++ D +++ F++F A+ AI +N G+ L + V P
Sbjct: 152 AQF-GNIVSAKVATDGQGNSKGYGFIQFDTEAAAKEAIEKVN--GMELNDKVVYVGP 205
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGA 310
E++ +Y+ +++ +E L LF G + CR+ D + V R AF+ F+ E
Sbjct: 319 EKMAGANLYIKNLEDGADDETLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEAT 378
Query: 311 RAALNLAGTMLGFYPVRV 328
RA L G M+G P+ V
Sbjct: 379 RAVTELNGKMVGAKPLYV 396
>gi|195110141|ref|XP_001999640.1| GI22960 [Drosophila mojavensis]
gi|193916234|gb|EDW15101.1| GI22960 [Drosophila mojavensis]
Length = 475
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 18/184 (9%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T+YV ++D V+E+ L ALF G V C+I +P + +AFIE+++ + A +
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFGKMGPVKSCKIIREPGND-PYAFIEYSNYQAASTALTAM 65
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+ ++V A +P N P+T+ I+ ++ ++ ++ F
Sbjct: 66 NKRVFLDKEIKV---NWATSPGN---TPKTDISSH---HHIFVGDLSPEIETETLREAFA 116
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
GE+ R++ D H S AFV FV AE+AI ++N G +GS IR + S
Sbjct: 117 PF-GEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQSMN--GQWIGSRNIRTNWSTR 173
Query: 432 PVRP 435
+ P
Sbjct: 174 KLPP 177
>gi|432851905|ref|XP_004067100.1| PREDICTED: embryonic polyadenylate-binding protein 2-like [Oryzias
latipes]
Length = 259
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFIEFT 304
+R + R+VYV ++D T ++L F GCG V + C R G P FA+IEF+
Sbjct: 72 ERMDADNRSVYVGNVDYGATADELEIHFNGCGPVNRVTILCDRFSGHPKG---FAYIEFS 128
Query: 305 DEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 341
D + A++A+ L TM ++VLP +T + ++ T
Sbjct: 129 DRS-AAQSAVGLHETMFRGRVLKVLPKRTNMPGISTT 164
>gi|391332510|ref|XP_003740677.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 341
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEF--TDEAEGARAAL 314
++V D+ V +QL F G++ DCR+ DP + + F+ F +AE A A+
Sbjct: 50 IFVGDLSSDVETQQLREAFTPFGEISDCRVVRDPQTQKSKGYGFVSFLRKQDAETAINAM 109
Query: 315 NLAGTMLGFYPVRV-----LPSKTA-------IAPVNPTFLPRTEDEREMCAR----TIY 358
N G LG +R P+ A P + P T DE A T+Y
Sbjct: 110 N--GQWLGGRVIRTNWATRRPASNANNQQEGSQGNSTPKYTPLTFDEVYNQASPTNCTVY 167
Query: 359 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
C + + +++ ++ F S G + +R+ D + AFV F ESA A+
Sbjct: 168 CGGLGQGLSEELIQKTFSSY-GIIQEIRVFKDKGY----AFVRFATKESATHAI 216
>gi|221111756|ref|XP_002159647.1| PREDICTED: RNA-binding protein 39-like [Hydra magnipapillata]
Length = 528
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFV 403
+++ER+ +RT++ + K+VT D++ FF V G+V +RL+ D + S I +VEF
Sbjct: 177 SQEERD--SRTVFIMQLAKQVTIRDIQDFFSKV-GQVRDVRLISDRNSRRSKGIGYVEFT 233
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPS 429
A + A+ SG L +PI VSP+
Sbjct: 234 DASAVTLAIKLSGQKLLGVPIMVSPT 259
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 8/180 (4%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAE 308
+EE RTV++ + +QVT + F GQV D R+ D NS ++EFTD A
Sbjct: 178 QEERDSRTVFIMQLAKQVTIRDIQDFFSKVGQVRDVRLISDRNSRRSKGIGYVEFTD-AS 236
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQ 368
A+ L+G L P+ V P+ +A N + + +Y ++ +T+
Sbjct: 237 AVTLAIKLSGQKLLGVPIMVSPT---MAEKNRYAAAQAALVKPQGPMKLYVGSLHYNITE 293
Query: 369 ADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
++ FE E +L+ + + S FV F A +A A+ +G L P++V
Sbjct: 294 PMLRAIFEPFGTVESVQLQYDSETNRSKGFGFVNFREAGAAKRAMEQMNGFELAGRPMKV 353
>gi|146083801|ref|XP_001464839.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|134068934|emb|CAM67075.1| putative RNA-binding protein [Leishmania infantum JPCM5]
Length = 409
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
R Y+ +ID+ VT + L +F CG ++DC + G RF FI+F E + ARA
Sbjct: 8 TRFGCYIGNIDRSVTIDMLKQVFCQCGTIIDCSLNGREGDPYRFGFIDFATEDDRARA 65
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N + +K F S G+ ++++ D ++ FV F E A A+
Sbjct: 192 NVYIKNFGDDMDDGRLKELF-SKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAV 248
>gi|444728816|gb|ELW69258.1| Bcl-2-like protein 2 [Tupaia chinensis]
Length = 367
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 228 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 284
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 285 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 315
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 230 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 288
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 289 KESVRTSLALDESLFRGRQIKVIPKRT 315
>gi|389600963|ref|XP_003722977.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322504591|emb|CBZ14490.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 404
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
R Y+ +ID+ VT + L +F CG ++DC + G RF FI+F E + ARA
Sbjct: 9 RFGCYIGNIDRSVTIDMLRQVFCQCGTIIDCSLNGREGDPYRFGFIDFATEDDRARA 65
>gi|116200107|ref|XP_001225865.1| hypothetical protein CHGG_08209 [Chaetomium globosum CBS 148.51]
gi|88179488|gb|EAQ86956.1| hypothetical protein CHGG_08209 [Chaetomium globosum CBS 148.51]
Length = 586
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 23/199 (11%)
Query: 240 RRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLR 297
R R + +E RRTV+V + ++ +L F G V + +I D N
Sbjct: 166 RNSTPRDTSPTGDERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKG 225
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS--------KTAIAPVNPTFLPRTEDE 349
++EF E E AAL L G L PV V P+ + + + +P +P
Sbjct: 226 VGYVEFKGE-ESVAAALQLTGQKLLGIPVIVQPTEAEKNRQVRNSESSGHPNSVP----- 279
Query: 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESA 408
+Y NI +T+ D++ FE GE+ ++L D +R FV+F A A
Sbjct: 280 ----FHRLYVGNIHFSITETDLQNVFEPF-GELEFVQLQKDDSGRSRGYGFVQFRDAGQA 334
Query: 409 IAAL-NCSGVVLGSLPIRV 426
AL +G L PIRV
Sbjct: 335 REALEKMNGFDLAGRPIRV 353
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFV 403
T DER+ RT++ + ++ ++K FFE V G V +++ D + S + +VEF
Sbjct: 176 TGDERDR--RTVFVQQLAARLRTRELKEFFEKV-GPVAEAQIVKDRVSNRSKGVGYVEFK 232
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSK 430
ES AAL +G L +P+ V P++
Sbjct: 233 GEESVAAALQLTGQKLLGIPVIVQPTE 259
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
+Y+ ++++ + + + F G +++C + D R + F+ F D E ARAA+
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHF-DSEEAARAAIEKV 167
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVKLFF 375
M L + + V F+PR + E+E + +Y N+ ++ T+ ++ F
Sbjct: 168 NGM--------LCNNQKVHVV--KFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 217
Query: 376 ESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA-LNCSGVVLG 420
E +L + S R FV F +SA+AA + G LG
Sbjct: 218 EPYGRITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLG 263
>gi|66802614|ref|XP_635179.1| RNA recognition motif RNP-1 domain-containing protein
[Dictyostelium discoideum AX4]
gi|60463492|gb|EAL61677.1| RNA recognition motif RNP-1 domain-containing protein
[Dictyostelium discoideum AX4]
Length = 463
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 11/177 (6%)
Query: 258 TVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAAL 314
++Y+ D+ VT++QL F G V R+ D + + + F++F + E +A +
Sbjct: 114 SLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFASDVEKDKALI 173
Query: 315 NLAGTMLGFYPVRVL-PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
++ G + P++V P+ + T T + A IY + +D + + ++
Sbjct: 174 DMNGFYINNKPIKVNNPTHKRLNSQTSTIPDLTSTDPNNTA--IYVSQLDHYIDEGVLQT 231
Query: 374 FFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
F GE+ +++L + AFV FV ESA AA + +G+ ++V K
Sbjct: 232 IF-GAYGEISYIKMLTNKFS----AFVNFVNRESAEAAFGLNNFPVGNTRLKVQWGK 283
>gi|40253807|dbj|BAD05744.1| putative RNA Binding Protein 45 [Oryza sativa Japonica Group]
gi|40253847|dbj|BAD05783.1| putative RNA Binding Protein 45 [Oryza sativa Japonica Group]
Length = 427
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 12/199 (6%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLR-- 297
R+N ++ +R++ T++V D+ VT+ L F V V ++ D ++
Sbjct: 169 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKMTMRSKG 228
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT---EDEREMCA 354
+ F++F D +E ARA + G + P+R+ P+ A +P + + +
Sbjct: 229 YGFVKFGDPSEQARAMTEMNGMVCSSRPMRIGPAANKKATGVQEKVPSAQGVQSDSDPSN 288
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN- 413
TI+ +D VT +K F + G+V +++ R FV+F SA AL
Sbjct: 289 TTIFVGGLDPSVTDDMLKQVF-TPYGDVVHVKI----PVGKRCGFVQFANRASADEALVL 343
Query: 414 CSGVVLGSLPIRVSPSKTP 432
G ++G +R+S ++P
Sbjct: 344 LQGTLIGGQNVRLSWGRSP 362
>gi|116309951|emb|CAH66982.1| H0714H04.9 [Oryza sativa Indica Group]
Length = 704
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 27/195 (13%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
+T++V ++ V +EQ+ F G+VVD R + R F +EF AE A+ AL
Sbjct: 446 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFAT-AEAAKKALE 504
Query: 316 LAGTMLGFYPVR--VLPSKTAIAPV----NPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
LAG L PVR + + A P N +F + + TI+ D T
Sbjct: 505 LAGHDLMGRPVRLDLARERGAYTPGSGRDNSSF----KKPAQSSGNTIFIKGFD---TSL 557
Query: 370 DVKLFFESV------CGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNCSGVVLGS 421
D+ S+ CGE+ R+ + DY S +A+++F S A +G LG
Sbjct: 558 DIHQIRNSLEEHFGSCGEITRVSIPRDYETGASKGMAYMDFADNGSLSKAYELNGSDLGG 617
Query: 422 LPIRVSPSKTPVRPR 436
+ V + RPR
Sbjct: 618 YSLYVDEA----RPR 628
>gi|442761059|gb|JAA72688.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Ixodes ricinus]
Length = 235
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFV 403
T +ER+M RT++C + +++ D++ FF +V G+V +RL+ D S IA+VEF
Sbjct: 36 TPEERDM--RTVFCMQLSQRIRARDLEEFFSAV-GKVRDVRLIMDNKTRRSKGIAYVEFQ 92
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSK 430
ES A+ +G L +PI V P++
Sbjct: 93 DVESVPLAMGLNGQKLFGIPIVVQPTQ 119
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 87/203 (42%), Gaps = 20/203 (9%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR---FAFIEFTDEAE 308
EE RTV+ + Q++ L F G+V D R+ D N R A++EF D E
Sbjct: 38 EERDMRTVFCMQLSQRIRARDLEEFFSAVGKVRDVRLIMD-NKTRRSKGIAYVEFQD-VE 95
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR------TIYCTNI 362
A+ L G L P+ V P++ A N R +Y ++
Sbjct: 96 SVPLAMGLNGQKLFGIPIVVQPTQ---AERNRAAAQSASTSSSTLQRGNIGPMRLYVGSL 152
Query: 363 DKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+T+ +K FE G++ ++ L+ D + S F+ F +E A AL +G L
Sbjct: 153 HFNITEDMLKGIFEPF-GKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFEL 211
Query: 420 GSLPIRVS--PSKTPVRPRAPRL 440
P++V +T V P+APRL
Sbjct: 212 AGRPMKVGHVTERTDVVPKAPRL 234
>gi|403339762|gb|EJY69142.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 1016
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 24/191 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNL 316
TVYV + Q E++L F G + R+ +PN L+ F +I+F + A +L
Sbjct: 736 TVYVHGLPQTCNEQKLREHFKEIGDIEQVRLIRNPNGTLKGFGYIQFLSKKSVQVAIESL 795
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+ + + V +K+ ++ RE T++ N+D ++ ++K + E
Sbjct: 796 NKSKIDNRTISVERNKSK------------KEAREDIGFTVFVKNLDYHTSEDELKSYSE 843
Query: 377 SVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALNCS---------GVVLGSLPIRV 426
GEV R+ L D HS F+EF+ S A+ G+++ SL +V
Sbjct: 844 DNFGEVKRVTLSKDEKGHSKGHGFIEFLDEASMNKAIEKKEITDLGRRIGIIMKSLR-QV 902
Query: 427 SPSKTPVRPRA 437
+ KT R
Sbjct: 903 TQPKTSFSDRG 913
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 104/227 (45%), Gaps = 41/227 (18%)
Query: 230 RRKKSFGQGKRRMN-------SRTSLAQREEIIR---RTVYVSDIDQQVTEEQLAALF-- 277
R K+ F + K R N + L + ++ +R +T+Y+ ++++ EE + ALF
Sbjct: 610 RPKREFQESKERPNKQQEKEKDQADLEEHKQKVRSQKKTLYLEQLNEETEEEDITALFIR 669
Query: 278 -VGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL----NLAGTMLGFYPVRVLPS 331
V +++D R+ D R FAF++ + ++ L NL G+ML + +
Sbjct: 670 VVADVKILDIRLIRDEQGKKRGFAFVDVESQEMAEKSLLLNNYNLKGSMLKIHIYK---- 725
Query: 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY 391
P N E E T+Y + + + ++ F+ + G++ ++RL+ +
Sbjct: 726 -----PPN---------ESEKSDFTVYVHGLPQTCNEQKLREHFKEI-GDIEQVRLIRNP 770
Query: 392 HHSTR-IAFVEFVMAES---AIAALNCSGVVLGSLPIRVSPSKTPVR 434
+ + + +++F+ +S AI +LN S + ++ + + SK R
Sbjct: 771 NGTLKGFGYIQFLSKKSVQVAIESLNKSKIDNRTISVERNKSKKEAR 817
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N + +K F S G+ ++++ D ++ FV F E A A+
Sbjct: 192 NVYIKNFGDDMDDGRLKELF-SKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAV 248
>gi|403333973|gb|EJY66125.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 1017
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 24/191 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNL 316
TVYV + Q E++L F G + R+ +PN L+ F +I+F + A +L
Sbjct: 736 TVYVHGLPQTCNEQKLREHFKEIGDIEQVRLIRNPNGTLKGFGYIQFLSKKSVQVAIESL 795
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+ + + V +K+ ++ RE T++ N+D ++ ++K + E
Sbjct: 796 NKSKIDNRTISVERNKSK------------KEAREDIGFTVFVKNLDYHTSEDELKSYSE 843
Query: 377 SVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALNCS---------GVVLGSLPIRV 426
GEV R+ L D HS F+EF+ S A+ G+++ SL +V
Sbjct: 844 DNFGEVKRVTLSKDEKGHSKGHGFIEFLDEASMNKAIEKKEITDLGRRIGIIMKSLR-QV 902
Query: 427 SPSKTPVRPRA 437
+ KT R
Sbjct: 903 TQPKTSFSDRG 913
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 104/227 (45%), Gaps = 41/227 (18%)
Query: 230 RRKKSFGQGKRRMN-------SRTSLAQREEIIR---RTVYVSDIDQQVTEEQLAALF-- 277
R K+ F + K R N + L + ++ +R +T+Y+ ++++ EE + ALF
Sbjct: 610 RPKREFQESKERPNKQQEKEKDQADLEEHKQKVRSQKKTLYLEQLNEETEEEDITALFIR 669
Query: 278 -VGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL----NLAGTMLGFYPVRVLPS 331
V +++D R+ D R FAF++ + ++ L NL G+ML + +
Sbjct: 670 VVADVKILDIRLIRDEQGKKRGFAFVDVESQEMAEKSLLLNNYNLKGSMLKIHIYK---- 725
Query: 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY 391
P N E E T+Y + + + ++ F+ + G++ ++RL+ +
Sbjct: 726 -----PPN---------ESEKSDFTVYVHGLPQTCNEQKLREHFKEI-GDIEQVRLIRNP 770
Query: 392 HHSTR-IAFVEFVMAES---AIAALNCSGVVLGSLPIRVSPSKTPVR 434
+ + + +++F+ +S AI +LN S + ++ + + SK R
Sbjct: 771 NGTLKGFGYIQFLSKKSVQVAIESLNKSKIDNRTISVERNKSKKEAR 817
>gi|224115306|ref|XP_002316998.1| predicted protein [Populus trichocarpa]
gi|222860063|gb|EEE97610.1| predicted protein [Populus trichocarpa]
Length = 403
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 88/215 (40%), Gaps = 36/215 (16%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCR 287
+ G G+RR + TV+V D+ V + L F V +VV R
Sbjct: 148 TLGAGERRQDDGPDF---------TVFVGDLAADVNDYLLQETFRNVYPSVKGAKVVTDR 198
Query: 288 ICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT- 346
+ G + FI F DE E RA + + G P+R+ P+ T P+ + T
Sbjct: 199 VTGRSKG---YGFIRFADENEQRRAMVEMNGQYCSTRPMRIGPAATK-KPLTQQYQKATY 254
Query: 347 ------EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFV 400
+ E + TI+ +D VT ++ F S GE+ +++ R FV
Sbjct: 255 QNPQGNQGENDPNNTTIFVGALDPSVTDDTLRAVF-SKYGELVHVKI----PAGKRCGFV 309
Query: 401 EF---VMAESAIAALNCSGVVLGSLPIRVSPSKTP 432
+F AE A++ LN G + IR+S ++P
Sbjct: 310 QFANRTSAEQALSMLN--GTQIAGQNIRLSWGRSP 342
>gi|145334517|ref|NP_001078604.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332005307|gb|AED92690.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 421
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 33/199 (16%)
Query: 258 TVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAAL 314
+++V D+ VT+ L F V V ++ DP++ + F++F +E+E RA
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 315 NLAGTMLGFYPVRV--------------------LPSKTAIAPVNPTFLPRTEDEREMCA 354
+ G P+R+ +PS A APV P E ++
Sbjct: 177 EMNGLYCSTRPMRISAATPKKNVGVQQQYVTKVTVPSAVA-APVQAYVAP---PESDVTC 232
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN- 413
TI N+D+ VT+ ++K F S GEV +++ + +V+F SA A+
Sbjct: 233 TTISVANLDQNVTEEELKKAF-SQLGEVIYVKIPA----TKGYGYVQFKTRPSAEEAVQR 287
Query: 414 CSGVVLGSLPIRVSPSKTP 432
G V+G +R+S SK P
Sbjct: 288 MQGQVIGQQAVRISWSKNP 306
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++Y+ D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+D+ + D K +
Sbjct: 72 MNFEVIKGRPIRIMWSQ------------RDPGLRKSGVGNVFIKNLDESI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLL 163
>gi|449454734|ref|XP_004145109.1| PREDICTED: polyadenylate-binding protein RBP45B-like [Cucumis
sativus]
Length = 404
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 36/196 (18%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ VT+ L F V +VV R+ G + F++F DE+E R
Sbjct: 158 TIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTG---RTKGYGFVKFGDESEQMR 214
Query: 312 AALNLAGTMLGFYPVRVLP------------SKTAIAPVNPTFLPRTEDEREMCARTIYC 359
A + G P+R+ P SKT+ NP ++E + TI+
Sbjct: 215 AMTEMNGVHCSSRPMRIGPAANKNTSGGQQFSKTSYQ--NPQ---GAQNENDPNNTTIFV 269
Query: 360 TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALNCSG 416
N+D VT ++ F GE+ +++ R FV+F AE A+ LN G
Sbjct: 270 GNLDANVTDEHLRQVFGQY-GELVHVKI----PVGKRCGFVQFADRNCAEEALRVLN--G 322
Query: 417 VVLGSLPIRVSPSKTP 432
+G IR+S ++P
Sbjct: 323 TQIGGQNIRLSWGRSP 338
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++Y+ D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+D+ + D K +
Sbjct: 72 MNFEVIKGRPIRIMWSQ------------RDPGLRKSGVGNVFIKNLDESI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLL 163
>gi|398013689|ref|XP_003860036.1| RNA-binding protein, putative [Leishmania donovani]
gi|322498255|emb|CBZ33329.1| RNA-binding protein, putative [Leishmania donovani]
Length = 409
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
R Y+ +ID+ VT + L +F CG ++DC + G RF FI+F E + ARA
Sbjct: 8 TRFGCYIGNIDRSVTIDMLKQVFCQCGTIIDCSLNGREGDPYRFGFIDFATEDDRARA 65
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 19/155 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA +
Sbjct: 12 SLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKAMY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA 408
+ S G++ +++ D + S FV F E+A
Sbjct: 117 DTFSAFGDILSCKVVCDENGSKGYGFVHFATEEAA 151
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
+Y+ ++++ + + + F G +++C + D R + F+ F D E ARAA+
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHF-DSEEAARAAIEKV 170
Query: 318 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVKLFF 375
M L + + V F+PR + E+E + +Y N+ ++ T+ ++ F
Sbjct: 171 NGM--------LCNNQKVHVV--KFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 220
Query: 376 ESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA-LNCSGVVLG 420
E +L + S R FV F +SA+AA + G LG
Sbjct: 221 EPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLG 266
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F+ A+ RA
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N + +K F+ G+ ++++ D +R FV + E A A+
Sbjct: 192 NVYIKNFGDDMDDERLKELFDKY-GKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAV 248
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 26/183 (14%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R++ V++ ++ + + + + F G ++ CR+ D R +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNSRGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--- 356
F+ F E E A A+N ML +V K F+PR+E ER M +
Sbjct: 143 FVHFETE-EAANEAINKVNGML-LNEKKVFVGK---------FVPRSERERMMGDKARLF 191
Query: 357 --IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFV---MAESAIA 410
+Y N +++ +K FE V G++ R++ D +R FV F AE A+
Sbjct: 192 TNVYVKNFGEELDDGKLKEMFE-VYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVK 250
Query: 411 ALN 413
LN
Sbjct: 251 ELN 253
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D VTE L F G V+ R+C D S L +A++ F + RA
Sbjct: 12 SLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAERAL-- 69
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ F P++ P + + +P+ R+ ++ N+ K + D K F
Sbjct: 70 ---DTMNFEPLKNRPMRIMWSQRDPSL-------RKSGVGNVFIKNLHKDI---DNKAIF 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVL 419
+ S G + R+ D ++R FV F E+A A+N +G++L
Sbjct: 117 DTFSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLL 164
>gi|302817804|ref|XP_002990577.1| hypothetical protein SELMODRAFT_448081 [Selaginella moellendorffii]
gi|300141745|gb|EFJ08454.1| hypothetical protein SELMODRAFT_448081 [Selaginella moellendorffii]
Length = 602
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 225 ANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV 284
A A+ ++K G+ +E +T++V +I VT+E LA F G+VV
Sbjct: 313 APASKKQKLENGKAAATKTDEVKTPAKEAGESKTLFVRNIPFSVTDEDLAQYFEDAGEVV 372
Query: 285 DCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLG---FYPVRVLPSKT-AIAPVNP 340
RI N FA +EF+ EA A+ ALN +G +G Y P T A P
Sbjct: 373 GVRIAQGDNGPKGFAHVEFSTEA-AAQKALNKSGQDMGGRRIYCDLANPRGTPASGPKRD 431
Query: 341 TFLPRTEDEREMCARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHS-- 394
P R+ T++ DK + ++ F+S CG + R+++ D
Sbjct: 432 RPSPGFNGNRKTSGNTVFVKGFDKYQEEDSIRESLTKHFKS-CGTIERVKIPTDRETGNI 490
Query: 395 TRIAFVEF 402
A++EF
Sbjct: 491 KGFAYIEF 498
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|301095902|ref|XP_002897050.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108479|gb|EEY66531.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 286
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 25/203 (12%)
Query: 251 REEIIRRT---VYVSDIDQQVTEEQLAALFVGCGQVVDCRI-----CGDPNSVLRFAFIE 302
++EI R+T VYV I + +E + F CG V + R+ G P +A +
Sbjct: 53 KDEIDRKTEATVYVEGIPYKASEGDIVTHFSSCGTVREVRMPRYQDSGKPRG---YAHVV 109
Query: 303 FTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAP--VNPTFLPRTEDEREMCA---RTI 357
F DEA AL L G L R L + A AP V +T++ + RT+
Sbjct: 110 FDDEA-ALEKALELDGQYLFN---RYLSIRRAEAPRAVEMALKEKTQNATKKAVKGCRTV 165
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI---AFVEFVMAESAIAALNC 414
Y + +V + ++ S CG + +R L ++H+ ++ +VEF + A+AA
Sbjct: 166 YIKQLPYEVEEDTIRQALAS-CGTITSVR-LPIWNHTKKLKGFGYVEFSSEDEALAAARR 223
Query: 415 SGVVLGSLPIRVSPSKTPVRPRA 437
SG+ +G + +S P+A
Sbjct: 224 SGMKIGDRMVLISLDVAGSAPKA 246
>gi|19112586|ref|NP_595794.1| poly(A) binding protein Pab2 [Schizosaccharomyces pombe 972h-]
gi|74675955|sp|O14327.1|PAB2_SCHPO RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName:
Full=Poly(A)-binding protein II; Short=PABII
gi|2467274|emb|CAB16904.1| poly(A) binding protein Pab2 [Schizosaccharomyces pombe]
Length = 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFIEFTD 305
+E I ++VYV ++D VT E+L + F CG V + C + G P FA+IEF+
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAYIEFS- 104
Query: 306 EAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
E AL L G+ML P++V P +T +
Sbjct: 105 EPSLVPNALLLNGSMLHERPLKVTPKRTNV 134
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 348 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMA 405
D+ + A+++Y N+D VT +++ F S CG V R+ +L D H A++EF
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFAS-CGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKTPV 433
AL +G +L P++V+P +T V
Sbjct: 107 SLVPNALLLNGSMLHERPLKVTPKRTNV 134
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL F GQVV R+C D + L + ++ + + +RA
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L L +RV+ + R R+ I+ N+DK + + F
Sbjct: 106 LNFMALNGRAIRVM------------YSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETF 153
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
S G + ++ D S FV++ E+A A++ +G++L + V P
Sbjct: 154 -SAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGP 207
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 236 GQGKRRMNSRTSLAQR-EEIIRRT--------VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ +++ T L Q+ E+ ++ +YV ++D+ VT+++L F G + C
Sbjct: 297 GKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSC 356
Query: 287 RICGDPNSVLRFA-FIEFTDEAEGARAALNLAGTMLGFYPVRV 328
++ DP+ V R + F+ F+ E RA + G M+ P+ V
Sbjct: 357 KVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYV 399
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F+ A+ RA
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N + +K F+ G+ ++++ D +R FV + E A A+
Sbjct: 192 NVYIKNFGDDMDDERLKELFDKY-GKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAV 248
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|297297505|ref|XP_001107287.2| PREDICTED: polyadenylate-binding protein 2-like isoform 2 [Macaca
mulatta]
Length = 355
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 221 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 277
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 278 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 308
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 223 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 281
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 282 KESVRTSLALDESLFRGRQIKVIPKRT 308
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|340502094|gb|EGR28811.1| splicing factor subunit 4, putative [Ichthyophthirius multifiliis]
Length = 267
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 21/175 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALN 315
T+YV IDQ+VT+E L LF CG VV+ + D + + F+EF E + +
Sbjct: 13 TIYVGGIDQKVTQEVLWELFSQCGIVVNVHLPKDKITGEHQGYGFVEFKSEEDADYSIKI 72
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER-EMCARTIYCTNIDKKVTQADVKLF 374
+ L P++V + ++D+R + I+ N+D+ +T+ +
Sbjct: 73 MHLVKLYGKPIKVNKA--------------SQDKRTQEVGANIFIGNLDQSITEQQLHDT 118
Query: 375 FESVCGEVYRLRLL--GDYHHSTRIAFVEFVMAESAIAALNC-SGVVLGSLPIRV 426
F S G + R++ D S AFV + E+A AA+N +G GS I V
Sbjct: 119 F-SQFGLIISRRIVRDPDNDESKGYAFVSYDNFEAADAAINTMNGQFFGSKKINV 172
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 238 GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--V 295
GK ++ S +R + + +++ ++DQ +TE+QL F G ++ RI DP++
Sbjct: 80 GKPIKVNKASQDKRTQEVGANIFIGNLDQSITEQQLHDTFSQFGLIISRRIVRDPDNDES 139
Query: 296 LRFAFIEFTDEAEGARAALN-LAGTMLG 322
+AF+ + D E A AA+N + G G
Sbjct: 140 KGYAFVSY-DNFEAADAAINTMNGQFFG 166
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 23/204 (11%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAREFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN- 413
+Y N + + ++ F G +R++ D +R FV F E A A++
Sbjct: 192 NVYIKNFGDDMDEEKLRDVFNKY-GNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDE 250
Query: 414 CSGVVLGSLPIRVSPSKTPVRPRA 437
+G + PI V ++ V +A
Sbjct: 251 MNGKEMNGKPIYVGRAQKKVERQA 274
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKF-GAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F + E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSQKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE+ L F G V+ R+C D L +A++ F A+ RA
Sbjct: 11 SLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERALDT 70
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R+ T+ R R+ ++ +DK + D K +
Sbjct: 71 MNFDIIKGRPIRI------------TWYQRDPSLRKSGVGNVFIKKLDKSI---DNKALY 115
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA-IAALNCSGVVL 419
+ S G + +++ D H S FV F E+A IA +G++L
Sbjct: 116 DTFSAFGNISSCKIVCDEHGSRGYGFVHFETDEAARIAIEKVNGMLL 162
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEAEGARAA 313
++Y D+ VTE L +F G V R+C D SV R +A+I F + A+ RA
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRD--SVTRKSLGYAYINFHNVADAERAL 106
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L + P++ P + + +P R A +Y N+D+ + D K
Sbjct: 107 -----DTLNYSPIKGRPCRLMWSHRDPAL-------RRSGAGNVYVKNLDRNI---DNKA 151
Query: 374 FFE--SVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPS 429
++ S+ G + ++ L S FV F ESA AA+ +G+ +G + V+P
Sbjct: 152 LYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPF 211
Query: 430 K 430
K
Sbjct: 212 K 212
>gi|222640040|gb|EEE68172.1| hypothetical protein OsJ_26296 [Oryza sativa Japonica Group]
Length = 329
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 12/199 (6%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLR-- 297
R+N ++ +R++ T++V D+ VT+ L F V V ++ D ++
Sbjct: 64 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKMTMRSKG 123
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT---EDEREMCA 354
+ F++F D +E ARA + G + P+R+ P+ A +P + + +
Sbjct: 124 YGFVKFGDPSEQARAMTEMNGMVCSSRPMRIGPAANKKATGVQEKVPSAQGVQSDSDPSN 183
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN- 413
TI+ +D VT +K F + G+V +++ R FV+F SA AL
Sbjct: 184 TTIFVGGLDPSVTDDMLKQVF-TPYGDVVHVKI----PVGKRCGFVQFANRASADEALVL 238
Query: 414 CSGVVLGSLPIRVSPSKTP 432
G ++G +R+S ++P
Sbjct: 239 LQGTLIGGQNVRLSWGRSP 257
>gi|226500040|ref|NP_001150056.1| LOC100283683 [Zea mays]
gi|195636346|gb|ACG37641.1| nucleolysin TIAR [Zea mays]
Length = 421
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 21/174 (12%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
R+VYV +I QVT+ L +F G V C++ S F FI++ D A A L+L
Sbjct: 75 RSVYVGNIHLQVTDTVLQEVFQSIGPVEGCKLIRKEKS--SFGFIDYYDRRYAALAILSL 132
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
G L P++V + T+ PR + I+ ++ +VT A + FF
Sbjct: 133 NGRQLYGQPIKVNWAYTST--------PREDTSGHF---NIFVGDLCPEVTDATLFAFFS 181
Query: 377 --SVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 425
S C + R++ D S FV F + A +A+N +G LG+ IR
Sbjct: 182 GYSTCSDA---RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLNGKWLGNRQIR 232
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIKKMNGMLL 163
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIKKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKF-GPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 249
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 25/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLF----GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 246
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 4/191 (2%)
Query: 226 NAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD 285
N + R K GK S SL + +YV ++D VTE+ L F G++V
Sbjct: 164 NGSTVRDKQIYVGKFIRKSERSLPDLDAKFT-NLYVKNLDPVVTEKHLGEKFSSFGKIVS 222
Query: 286 CRICGDPNSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLP 344
I D N + F F+ + + RA + G+ G + V ++ +
Sbjct: 223 LAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHL 282
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFV 403
E + IY NID V +++ F S CGEV +++ D +++ FV F
Sbjct: 283 FVEKGLKHMGSNIYVKNIDTSVGDEELRDHF-SACGEVLSAKVMRDDKGTSKGFGFVCFS 341
Query: 404 MAESAIAALNC 414
A +++C
Sbjct: 342 TVVEAFKSMSC 352
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR----FAFIEFTDEAEGARAA 313
++Y D+ VTE L +F G V R+C D SV R +A+I F + A+ RA
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRD--SVTRKSLGYAYINFHNVADAERAL 106
Query: 314 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
L + P++ P + + +P R A +Y N+D+ + D K
Sbjct: 107 -----DTLNYSPIKGRPCRLMWSHRDPAL-------RRSGAGNVYVKNLDRNI---DNKA 151
Query: 374 FFE--SVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPS 429
++ S+ G + ++ L S FV F ESA AA+ +G+ +G + V+P
Sbjct: 152 LYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPF 211
Query: 430 K 430
K
Sbjct: 212 K 212
>gi|30683122|ref|NP_850803.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332004145|gb|AED91528.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 202
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMA 405
E + E+ AR++Y N+D T +V+L F++ CG V R+ +L D + A+VEFV
Sbjct: 81 EGKEEVDARSVYVGNVDYACTPEEVQLHFQT-CGTVNRVTILMDKFGQPKGFAYVEFVEV 139
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKTPV 433
E+ AL + L ++VSP +T V
Sbjct: 140 EAVQEALQLNESELHGRQLKVSPKRTNV 167
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC----GDPNSVLRFAFIEFTDE 306
+EE+ R+VYV ++D T E++ F CG V I G P FA++EF E
Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKG---FAYVEFV-E 138
Query: 307 AEGARAALNLAGTMLGFYPVRVLPSKTAI 335
E + AL L + L ++V P +T +
Sbjct: 139 VEAVQEALQLNESELHGRQLKVSPKRTNV 167
>gi|348677689|gb|EGZ17506.1| hypothetical protein PHYSODRAFT_501188 [Phytophthora sojae]
Length = 293
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 19/200 (9%)
Query: 251 REEIIRRT---VYVSDIDQQVTEEQLAALFVGCGQVVDCRI-----CGDPNSVLRFAFIE 302
+EEI R+T VYV I + E L F CG V + R+ G P +A +
Sbjct: 59 KEEIDRKTEATVYVEGIPYRANEGDLVTHFSSCGTVREVRMPRYQDSGKPRG---YAHVV 115
Query: 303 FTDEAEGARAALNLAGTML--GFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
F DEA + AL L G L + +R + A+ T + RT++
Sbjct: 116 FDDEA-ALKKALKLDGQYLFNRYLSIRRAEAPRAVEMALKEKNQNTTKKAVKGCRTVFIK 174
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI---AFVEFVMAESAIAALNCSGV 417
+ +V + ++ S CG + +R L ++H+ ++ +VEF + A+AA SG+
Sbjct: 175 QLPYEVEEGTIREALAS-CGTITSVR-LPIWNHTKKLKGFGYVEFSSEDEALAAARRSGM 232
Query: 418 VLGSLPIRVSPSKTPVRPRA 437
+G + +S P+A
Sbjct: 233 KIGDRMVLISLDAAGSAPKA 252
>gi|401419092|ref|XP_003874036.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490270|emb|CBZ25530.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 408
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
R Y+ +ID+ VT + L +F CG ++DC + G RF FI+F E + ARA
Sbjct: 9 RFGCYIGNIDRSVTIDMLKQVFCQCGTIIDCSLNGREGDPYRFGFIDFATEDDRARA 65
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|302803765|ref|XP_002983635.1| hypothetical protein SELMODRAFT_234317 [Selaginella moellendorffii]
gi|300148472|gb|EFJ15131.1| hypothetical protein SELMODRAFT_234317 [Selaginella moellendorffii]
Length = 573
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T++V +I VT+E LA F G+VV RI N FA +EF+ EA A+ ALN
Sbjct: 316 KTLFVRNIPFSVTDEDLAQYFEDAGEVVGVRIAQGDNGPKGFAHVEFSTEA-AAQKALNK 374
Query: 317 AGTMLG---FYPVRVLPSKT-AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
+G +G Y P T A P P R+ T++ DK + ++
Sbjct: 375 SGQDMGGRRIYCDLANPRGTPASGPKRDRPSPGFNGNRKTSGNTVFVKGFDKYQEEDSIR 434
Query: 373 ----LFFESVCGEVYRLRLLGDYHHS--TRIAFVEF 402
F+S CG + R+++ D A++EF
Sbjct: 435 DSLTKHFKS-CGTIERVKIPTDRETGNIKGFAYIEF 469
>gi|157867749|ref|XP_001682428.1| putative RNA-binding protein [Leishmania major strain Friedlin]
gi|68125882|emb|CAJ03486.1| putative RNA-binding protein [Leishmania major strain Friedlin]
Length = 409
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARA 312
R Y+ +ID+ VT + L +F CG ++DC + G RF FI+F E + ARA
Sbjct: 9 RFGCYIGNIDRSVTIDMLKQVFCQCGTIIDCSLNGREGDPYRFGFIDFATEDDRARA 65
>gi|15238140|ref|NP_196597.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7671468|emb|CAB89408.1| RNA binding protein-like [Arabidopsis thaliana]
gi|28393013|gb|AAO41941.1| putative polyadenylate-binding protein II (PAB2) [Arabidopsis
thaliana]
gi|28827384|gb|AAO50536.1| putative polyadenylate-binding protein II (PAB2) [Arabidopsis
thaliana]
gi|332004146|gb|AED91529.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 217
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMA 405
E + E+ AR++Y N+D T +V+L F++ CG V R+ +L D + A+VEFV
Sbjct: 81 EGKEEVDARSVYVGNVDYACTPEEVQLHFQT-CGTVNRVTILMDKFGQPKGFAYVEFVEV 139
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKT 431
E+ AL + L ++VSP +T
Sbjct: 140 EAVQEALQLNESELHGRQLKVSPKRT 165
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC----GDPNSVLRFAFIEFTDE 306
+EE+ R+VYV ++D T E++ F CG V I G P FA++EF E
Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKG---FAYVEFV-E 138
Query: 307 AEGARAALNLAGTMLGFYPVRVLPSKTAI 335
E + AL L + L ++V P +T +
Sbjct: 139 VEAVQEALQLNESELHGRQLKVSPKRTNV 167
>gi|427794973|gb|JAA62938.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 509
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFV 403
T +ER+M RT++C + +++ D++ FF +V G+V +RL+ D S IA+VEF
Sbjct: 143 TPEERDM--RTVFCMQLSQRIRARDLEEFFSAV-GKVRDVRLIMDNKTRRSKGIAYVEFQ 199
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSK 430
ES A+ +G L +PI V P++
Sbjct: 200 DVESVPLAMGLNGQKLFGIPIVVQPTQ 226
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR---FAFIEFTDEAE 308
EE RTV+ + Q++ L F G+V D R+ D N R A++EF D E
Sbjct: 145 EERDMRTVFCMQLSQRIRARDLEEFFSAVGKVRDVRLIMD-NKTRRSKGIAYVEFQD-VE 202
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTA---IAPVNPTFLPRTEDEREMCARTIYCTNIDKK 365
A+ L G L P+ V P++ A N + T + +Y ++
Sbjct: 203 SVPLAMGLNGQKLFGIPIVVQPTQAERNRAAAQNASTSNSTLQRGNVGPMRLYVGSLHFN 262
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAAL-NCSGVVLGSL 422
+T+ +K FE G++ ++ L+ D + S F+ F +E A AL +G L
Sbjct: 263 ITEEMLKGIFEPF-GKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFELAGR 321
Query: 423 PIRV 426
P++V
Sbjct: 322 PMKV 325
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 25/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLF----GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 246
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 17/173 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++Y+ ++D VTE L LF G V R+C D + L +A++ F + +G +A
Sbjct: 70 SLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 129
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ +P+ R+M ++ N+D + + F
Sbjct: 130 LNYTLIKGRPCRIMWSQR-----DPSL-------RKMGTGNVFIKNLDPAIDNKALHDTF 177
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
S G++ ++ D +S FV F +SA AA+ + +G++L + V
Sbjct: 178 -SAFGKILSCKVAVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYV 229
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 25/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLF----GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 246
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 17/200 (8%)
Query: 224 NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV 283
+AN + G + TS A ++YV ++D VTE L LF GQV
Sbjct: 24 DANGTAVNTSAGSAGATEAPTPTSAAPSAHQNSASLYVGELDPSVTEAMLFELFSSIGQV 83
Query: 284 VDCRICGDPNS--VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 341
R+C D + L +A++ + +G +A L T++ P R++ S+
Sbjct: 84 ASIRVCRDAVTRRSLGYAYVNYNSSDDGEKALEELNYTLIKGKPCRIMWSQ--------- 134
Query: 342 FLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFV 400
R R+ ++ N+D + + F + G + ++ D + +++ FV
Sbjct: 135 ---RDPALRKTGQGNVFIKNLDGAIDNKALHDTF-AAFGNILSCKVAQDENGNSKGYGFV 190
Query: 401 EFVMAESAIAALNC-SGVVL 419
+ AE+A A+ +G++L
Sbjct: 191 HYETAEAANNAIKAVNGMLL 210
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 18/178 (10%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D N + +
Sbjct: 129 RIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYG 188
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + R EM A +
Sbjct: 189 FVHY-ETAEAANNAIKAVNGML-------LNEKKVFVGHHIPKKDRMSKFEEMKANFTNV 240
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN 413
Y NID +VT + + FE G++ L D S FV FV ESA A++
Sbjct: 241 YVKNIDLEVTDDEFRELFEKY-GQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVD 297
>gi|432919034|ref|XP_004079712.1| PREDICTED: ELAV-like protein 2-like [Oryzias latipes]
Length = 389
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 28/187 (14%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAA 313
+ + V+ + Q +T+E+L +LF G++ C++ D L + F+ + D + +A
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAI 126
Query: 314 LNLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
L G L ++V PS +I N +Y + + K +TQ +
Sbjct: 127 NTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMTQKE 169
Query: 371 VKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEF---VMAESAIAALNCSGVVLGSLPIR 425
++ F S G + R+L D S + F+ F V AE AI LNC + PI
Sbjct: 170 LEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNCQKPPGATEPIT 228
Query: 426 VSPSKTP 432
V + P
Sbjct: 229 VKFANNP 235
>gi|427792527|gb|JAA61715.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 497
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFV 403
T +ER+M RT++C + +++ D++ FF +V G+V +RL+ D S IA+VEF
Sbjct: 131 TPEERDM--RTVFCMQLSQRIRARDLEEFFSAV-GKVRDVRLIMDNKTRRSKGIAYVEFQ 187
Query: 404 MAESAIAALNCSGVVLGSLPIRVSPSK 430
ES A+ +G L +PI V P++
Sbjct: 188 DVESVPLAMGLNGQKLFGIPIVVQPTQ 214
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR---FAFIEFTDEAE 308
EE RTV+ + Q++ L F G+V D R+ D N R A++EF D E
Sbjct: 133 EERDMRTVFCMQLSQRIRARDLEEFFSAVGKVRDVRLIMD-NKTRRSKGIAYVEFQD-VE 190
Query: 309 GARAALNLAGTMLGFYPVRVLPSKTA---IAPVNPTFLPRTEDEREMCARTIYCTNIDKK 365
A+ L G L P+ V P++ A N + T + +Y ++
Sbjct: 191 SVPLAMGLNGQKLFGIPIVVQPTQAERNRAAAQNASTSNSTLQRGNVGPMRLYVGSLHFN 250
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAAL-NCSGVVLGSL 422
+T+ +K FE G++ ++ L+ D + S F+ F +E A AL +G L
Sbjct: 251 ITEEMLKGIFEPF-GKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFELAGR 309
Query: 423 PIRV 426
P++V
Sbjct: 310 PMKV 313
>gi|17647581|ref|NP_523957.1| lark, isoform A [Drosophila melanogaster]
gi|24659966|ref|NP_729237.1| lark, isoform B [Drosophila melanogaster]
gi|24659971|ref|NP_729238.1| lark, isoform C [Drosophila melanogaster]
gi|24659976|ref|NP_729239.1| lark, isoform D [Drosophila melanogaster]
gi|24659981|ref|NP_729240.1| lark, isoform E [Drosophila melanogaster]
gi|62510825|sp|Q94901.1|LARK_DROME RecName: Full=RNA-binding protein lark
gi|1518654|gb|AAB07067.1| RNA-binding protein lark [Drosophila melanogaster]
gi|7295256|gb|AAF50578.1| lark, isoform A [Drosophila melanogaster]
gi|16769574|gb|AAL29006.1| LD40792p [Drosophila melanogaster]
gi|23094008|gb|AAN12053.1| lark, isoform B [Drosophila melanogaster]
gi|23094009|gb|AAN12054.1| lark, isoform C [Drosophila melanogaster]
gi|23094010|gb|AAN12055.1| lark, isoform D [Drosophila melanogaster]
gi|23094011|gb|AAN12056.1| lark, isoform E [Drosophila melanogaster]
gi|220946850|gb|ACL85968.1| lark-PA [synthetic construct]
gi|220956448|gb|ACL90767.1| lark-PA [synthetic construct]
Length = 352
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAG 318
+++ ++D++ +L ALF G VV+C + V + F+ E +G A NL G
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDV------VKNYGFVHMETEQQGRDAIQNLNG 62
Query: 319 TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESV 378
L + ++V +K+ AP PT I+ N+ K +V+ F+
Sbjct: 63 YTLNEFAIKVEAAKSRRAPNTPT-------------TKIFVGNLTDKTRAPEVRELFQKY 109
Query: 379 CGEVYRLRLLGDYHHSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKTPVRP 435
G V ++ +Y FV + AI LN G V+ P++V S + VRP
Sbjct: 110 -GTVVECDIVRNY------GFVHLDCVGDVQDAIKELN--GRVVDGQPLKVQVSTSRVRP 160
Query: 436 R 436
+
Sbjct: 161 K 161
>gi|391331494|ref|XP_003740180.1| PREDICTED: probable RNA-binding protein 46-like [Metaseiulus
occidentalis]
Length = 357
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 24/212 (11%)
Query: 228 AVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDC 286
+ R + G+ + S L R E+ RR +YV++I + T+E + F G +VD
Sbjct: 128 SARWGSALGKSEALRKSTEGLIVRTEMGRR-LYVANIPKVKTKEDIFNHFNRFLGGLVDV 186
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLP 344
+ P S F FIEF A + + R + + +P P
Sbjct: 187 MVYTYPGSTQNRGFCFIEFNSSKNAMFAKETIVAS-------RPWGCEVVVDWADPEQEP 239
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV- 403
++E + +Y N+ +VT AD++ F +V R++++ D+ AFV F
Sbjct: 240 --DEEIMKSVKVLYIKNLSPRVTDADLRRAFAERGLQVERVKVIRDF------AFVHFFT 291
Query: 404 --MAESAIAALNCSGVVLGSLPIRVSPSKTPV 433
+AE A+ C + L LP++VS +K P+
Sbjct: 292 RSLAEKAMKV--CQNLTLDDLPLQVSWAKPPI 321
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|403342322|gb|EJY70479.1| hypothetical protein OXYTRI_08772 [Oxytricha trifallax]
Length = 471
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 10/185 (5%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL-- 316
++V +I E L A F G +V+ I + +AFI+F+ AE +A L
Sbjct: 188 IFVGNIPFTTDAETLKAKFEAIGTIVNVSIPMSGKRMKGYAFIKFSTRAEAEKAVKKLND 247
Query: 317 ---AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
G L V K A T E + + + T++ N+ + +++
Sbjct: 248 FDFDGRQL---KVNFSSGKEAEKREKKTGDENGEKKEQTKSSTVFIGNLSYSTNEQNIRK 304
Query: 374 FFESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 432
+ CGE+ +R+ LG+ A VEF AESA A+ +G L I+V S+
Sbjct: 305 LLKD-CGEIKGVRIALGEDGKMKGFAHVEFEDAESAEKAMKFNGADLDGRNIKVDISEKL 363
Query: 433 VRPRA 437
RA
Sbjct: 364 RDKRA 368
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC-GDPNSVLRFAFIEFTDEAE 308
++E+ TV++ ++ E+ + L CG++ RI G+ + FA +EF D AE
Sbjct: 279 KKEQTKSSTVFIGNLSYSTNEQNIRKLLKDCGEIKGVRIALGEDGKMKGFAHVEFED-AE 337
Query: 309 GARAALNLAGTMLGFYPVRV 328
A A+ G L ++V
Sbjct: 338 SAEKAMKFNGADLDGRNIKV 357
>gi|356525215|ref|XP_003531222.1| PREDICTED: uncharacterized protein LOC100790138 [Glycine max]
Length = 975
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAE 308
A +++ +++T+ VS++ +T EQL LF CG VV+C I FA+IE++ + E
Sbjct: 337 ASKDDALKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTIT----DSKHFAYIEYS-KPE 391
Query: 309 GARAALNLAGTMLGFYPVRV 328
A AAL L +G P+ V
Sbjct: 392 EATAALALNNIDVGGRPLNV 411
>gi|413920410|gb|AFW60342.1| nucleolysin TIAR [Zea mays]
Length = 447
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 21/174 (12%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
R+VYV +I QVT+ L +F G V C++ S F FI++ D A A L+L
Sbjct: 75 RSVYVGNIHLQVTDTVLQEVFQSIGPVEGCKLIRKEKS--SFGFIDYYDRRYAALAILSL 132
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
G L P++V + T+ PR + I+ ++ +VT A + FF
Sbjct: 133 NGRQLYGQPIKVNWAYTST--------PREDTSGHF---NIFVGDLCPEVTDATLFAFFS 181
Query: 377 --SVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 425
S C + R++ D S FV F + A +A+N +G LG+ IR
Sbjct: 182 GYSTCSDA---RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLNGKWLGNRQIR 232
>gi|357631053|gb|EHJ78771.1| hypothetical protein KGM_03904 [Danaus plexippus]
Length = 591
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 10/211 (4%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ +++M S+ + QR++ + VYV I ++ E+ + F+ G +
Sbjct: 110 VLMKQTLAHQQQQMASQRTQVQRQQALALMCRVYVGSISFELKEDTIRQAFLPFGPIKSI 169
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + E A+ +L + G MLG ++V+ + + P +
Sbjct: 170 NMSWDPVTQKHKGFAFVEY-EIPEAAQLSLEQMNGVMLGGRNIKVV-GRPSNMPQAQAVI 227
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDYHHSTRIAFVEF 402
++E + R IY +I ++T+ D+K FE+ Y +L H F+E+
Sbjct: 228 DEIQEEAKQYNR-IYVASIHPELTEDDIKNVFEAFGPITYCKLAYGASAHKHKGYGFIEY 286
Query: 403 VMAESAIAALNCSGVV-LGSLPIRVSPSKTP 432
+A+ A+ + LG +RV + TP
Sbjct: 287 ATLPAALEAIASMNLFDLGGQYLRVGRAITP 317
>gi|297811137|ref|XP_002873452.1| polyadenylate-binding protein family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319289|gb|EFH49711.1| polyadenylate-binding protein family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 202
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 341 TFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAF 399
T E + E+ AR++Y N+D T +V+L F++ CG V R+ +L D + A+
Sbjct: 75 TMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQT-CGTVNRVTILMDKFGQPKGFAY 133
Query: 400 VEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPV 433
VEFV E+ AL + L ++VSP +T V
Sbjct: 134 VEFVEVEAVQEALQLNESELHGRQLKVSPKRTNV 167
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC----GDPNSVLRFAFIEFTDE 306
+EE+ R+VYV ++D T E++ F CG V I G P FA++EF E
Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKG---FAYVEFV-E 138
Query: 307 AEGARAALNLAGTMLGFYPVRVLPSKTAI 335
E + AL L + L ++V P +T +
Sbjct: 139 VEAVQEALQLNESELHGRQLKVSPKRTNV 167
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL-NL 316
+Y+ ++++ + + + F G +++C + D + R + F+ F D E ARAA+ +
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHF-DSEEAARAAIEKV 162
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVKLF 374
G + V V+ F+PR + E+E + +Y N+ ++ T+ ++
Sbjct: 163 NGMLCNNQKVHVV-----------KFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREM 211
Query: 375 FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA-LNCSGVVLG 420
FE +L + S R FV F +SA+AA + G LG
Sbjct: 212 FEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLG 258
>gi|409083337|gb|EKM83694.1| hypothetical protein AGABI1DRAFT_110331 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 444
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 33/200 (16%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
V+V D+ +V ++ LA F G + D R+ D NS + F+ F D+ + +A +
Sbjct: 109 VFVGDLSPEVNDDVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 168
Query: 317 AGTMLGFYPVRV------------------LPSKT---AIAPVN----PTFLPRTEDERE 351
G LG +RV P+ + A AP+N P +
Sbjct: 169 NGEWLGSRAIRVNWANQKTQGGAPAVQQSPRPAGSTGGAPAPINFQGGPLSYESVVQQTP 228
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAE-SAIA 410
T+Y N+ TQAD+ F+S+ G + +R+ D AFV+ E +A+A
Sbjct: 229 AYNTTVYVGNLVPYCTQADLIPLFQSI-GYLSEIRMQAD----RGFAFVKLDTHEHAAMA 283
Query: 411 ALNCSGVVLGSLPIRVSPSK 430
+ G ++ PI+ S K
Sbjct: 284 IVQLQGQMVHGRPIKCSWGK 303
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 74/193 (38%), Gaps = 21/193 (10%)
Query: 242 MNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---SVLRF 298
MN E R +YV ++ +VTE L +F G V +I D N L +
Sbjct: 1 MNPMGMGGPAEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNY 60
Query: 299 AFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIY 358
F+E+ D A L G + +R VN + + E ++
Sbjct: 61 GFVEYMDMRSAETALQTLNGRKIFDTEIR----------VNWAYQGQQNKEDTSGHYHVF 110
Query: 359 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-----IAFVEFVMAESAIAALN 413
++ +V DV S G + R++ D + +AF + AE AIA +N
Sbjct: 111 VGDLSPEVND-DVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMN 169
Query: 414 CSGVVLGSLPIRV 426
G LGS IRV
Sbjct: 170 --GEWLGSRAIRV 180
>gi|209154564|gb|ACI33514.1| RNA-binding protein 39 [Salmo salar]
Length = 525
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
P K +PV T +ER+ ART++C + ++ D++ FF +V G+V +R++
Sbjct: 127 PFKKEKSPVRQPIDNLTPEERD--ARTVFCMQLAARIRPRDLEEFFSAV-GKVRDVRMIS 183
Query: 390 DYH--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
D + S IA++EFV A S A+ SG L +PI V S+
Sbjct: 184 DRNSRRSKGIAYIEFVEANSVPLAIGLSGQRLLGVPIIVQASQ 226
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 7/180 (3%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEG 309
EE RTV+ + ++ L F G+V D R+ D NS A+IEF EA
Sbjct: 145 EERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFV-EANS 203
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
A+ L+G L P+ V S+ + + +Y ++ +T+
Sbjct: 204 VPLAIGLSGQRLLGVPIIVQASQVMAEKNRAAAMANNLQKGNAGPMRLYVGSLHFNITEE 263
Query: 370 DVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
++ FE G++ ++L+ D S F+ F E A AL+ +G L P++V
Sbjct: 264 MLRGIFEPF-GKIESIQLMMDSETGRSKGYGFITFSDTECAKKALDQLNGFELAGRPMKV 322
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFT---DEAEGARA 312
++YV D+D+ VTE QL +F G V R+C D + L +A++ + D A RA
Sbjct: 39 SLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAERA 98
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T L P+R++ S +P F R+ I+ N+D+ V +
Sbjct: 99 LDQLNYTPLVGRPMRIMWSHR-----DPAF-------RKSGVGNIFIKNLDRSVDNKALH 146
Query: 373 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESA-IAALNCSGVVLGSLPIRVSP 428
F S G + ++ D ++ FV F ESA +A +G++L + V P
Sbjct: 147 DTF-SAFGNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGP 203
>gi|358248652|ref|NP_001240173.1| uncharacterized protein LOC100814693 [Glycine max]
gi|255644669|gb|ACU22837.1| unknown [Glycine max]
Length = 411
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 11/173 (6%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQV--VDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
YV I TE+ + + F CG + VDC + A I F EA A+ AL L
Sbjct: 168 AYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIITFKTEA-AAKRALAL 226
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
G +G +++ P K A F P + IY N+ +T+ +++ FF
Sbjct: 227 DGADMGGLFLKIQPYKATRANKASDFAPEILEGYNR----IYVGNLSWDITEEELRKFFN 282
Query: 377 SVCGEVYRLRLLGDYHHST--RIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427
E+ LR D A V+F ++S AL VL P+R+S
Sbjct: 283 GC--EITSLRFGMDKETGEFRGYAHVDFSDSQSLKTALALDQNVLFGRPVRIS 333
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 25/200 (12%)
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NS 294
Q ++ + S +Q E ++YV D++ V+E L +F G V R+C D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA 354
L +A++ F D E R A++ L + P++ + + +P+ R+ +
Sbjct: 78 SLGYAYVNFNDH-EAGRKAID----QLNYTPIKGRLCRIMWSQRDPSL-------RKKGS 125
Query: 355 RTIYCTNIDKKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR----IAFVEFVMAESA 408
I+ N+ + D K ++ SV G++ ++ D + ++ + F E A+ A
Sbjct: 126 GNIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEA 182
Query: 409 IAALNCSGVVLGSLPIRVSP 428
I ALN G++L I V+P
Sbjct: 183 IDALN--GMLLNGQEIYVAP 200
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D+ VTE L LF G V R+C D + L +A++ + A+G +A
Sbjct: 60 SLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 119
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ I+ N+D + + F
Sbjct: 120 LNYTLIKNRPCRIMWSQ------------RDPALRKTGQGNIFIKNLDAAIDNKALHDTF 167
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D H +++ FV + E+A A+ + +G++L
Sbjct: 168 -AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLL 212
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F+ A+ RA
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++ +K FE G+ ++++ D +R FV F E A A+
Sbjct: 192 NVYIKNFGDEMEDEQLKEMFEKY-GKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAV 248
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/102 (18%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 236 GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ +++M + L ++ E++++ +Y+ ++D + +E+L F G +
Sbjct: 264 GRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 287 RICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
++ + F F+ F+ E +A + G ++G P+ V
Sbjct: 324 KVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L +F G V R+C D + L +A++ + + A+G RA +
Sbjct: 41 SLYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 100
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L + + P R++ S+ R R+ I+ N+D+ + + F
Sbjct: 101 LNYSAIKGRPCRIMWSQ------------RDPALRKTGQGNIFIKNLDESIDNKALHDTF 148
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ GE+ ++ D +R AFV + E+A AA+ G++L
Sbjct: 149 -AAFGEILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMML 193
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 236 GQGKRRMNSRTSL-----AQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ ++R+ T L +R+E ++ +YV ++D + +++L A F G + C
Sbjct: 294 GRAQKRVERDTELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDDDRLRAEFDSFGTITSC 353
Query: 287 RICGDPNSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
++ D V R F F+ ++ E +A + G M+G P+ V
Sbjct: 354 KVMKDERGVSRNFGFVCYSSPEEATKAVSEMNGKMIGSKPLYV 396
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 22/163 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE+ L F G V+ RIC D L +A++ F A+ +A
Sbjct: 110 SLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDT 169
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 170 MNFDMIKGKPIRLMWSQ------------RDAYLRKSGIGNVFIKNLDKSI---DNKTLY 214
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALN 413
E S G++ +++ D S AFV F A+ AI +N
Sbjct: 215 EHFSAFGKILSSKVMSDDQGSRGYAFVHFQNQNAADRAIEEMN 257
>gi|356510930|ref|XP_003524186.1| PREDICTED: uncharacterized protein LOC100796921 [Glycine max]
Length = 969
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAE 308
A +++ +++T+ VS++ +T EQL LF CG VV+C I FA+IE++ + E
Sbjct: 331 ASKDDALKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECAIT----DSKHFAYIEYS-KPE 385
Query: 309 GARAALNLAGTMLGFYPVRVLPSKT 333
A AAL L +G P+ V +K+
Sbjct: 386 EATAALALNNIDVGGRPLNVEMAKS 410
>gi|426201609|gb|EKV51532.1| hypothetical protein AGABI2DRAFT_189771 [Agaricus bisporus var.
bisporus H97]
Length = 469
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 33/200 (16%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
V+V D+ +V ++ LA F G + D R+ D NS + F+ F D+ + +A +
Sbjct: 109 VFVGDLSPEVNDDVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 168
Query: 317 AGTMLGFYPVRV------------------LPSKT---AIAPVN----PTFLPRTEDERE 351
G LG +RV P+ + A AP+N P +
Sbjct: 169 NGEWLGSRAIRVNWANQKTQGGAPAVQQSPRPAGSTGGAPAPINFQGGPLSYESVVQQTP 228
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAE-SAIA 410
T+Y N+ TQAD+ F+S+ G + +R+ D AFV+ E +A+A
Sbjct: 229 AYNTTVYVGNLVPYCTQADLIPLFQSI-GYLSEIRMQAD----RGFAFVKLDTHEHAAMA 283
Query: 411 ALNCSGVVLGSLPIRVSPSK 430
+ G ++ PI+ S K
Sbjct: 284 IVQLQGQMVHGRPIKCSWGK 303
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 21/168 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +VTE L F G VV R+C D L +A++ F A+ RA +
Sbjct: 13 SLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 72
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ +L P+R++ S+ R R I+ N+DK + D K +
Sbjct: 73 MNFDVLRGRPIRIMWSQ------------RDPSLRRSGVGNIFIKNLDKTI---DNKAMY 117
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVL 419
+ S G + ++ D +++ FV F ESA+ A+ +G++L
Sbjct: 118 DTFSAFGNILSCKVAQDEAGNSKGYGFVHFETEESAVNAITKVNGMLL 165
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +RR+ +++ ++D+ + + + F G ++ C++ D + +
Sbjct: 84 RIMWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDEAGNSKGYG 143
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYC 359
F+ F E A + G +L V V F+PR + ERE+ + Y
Sbjct: 144 FVHFETEESAVNAITKVNGMLLNGKKVFV-----------GRFIPRKDRERELGEKAKYF 192
Query: 360 TNI 362
TN+
Sbjct: 193 TNV 195
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEF 303
T+ AQ+ ++YV ++D VTE L LF GQV R+C D + L +A++ +
Sbjct: 37 TTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 96
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNID 363
+G +A L T++ P R++ S+ +P R+ ++ N+D
Sbjct: 97 NSSEDGEKALEELNYTVIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLD 144
Query: 364 KKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ + F + G + ++ D +S FV + AE+A A+ + +G++L
Sbjct: 145 HAIDNKALHDTF-AAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLL 201
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYG 179
Query: 300 FIEFTDEAEGARAAL-NLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRTEDEREMCAR 355
F+ + + AE A A+ ++ G +L V V +P K R EM A
Sbjct: 180 FVHY-ETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKE-----------RMSKFEEMKAN 227
Query: 356 --TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
IY NID VT D + FE G++ + D +R FV ++ E+A A+
Sbjct: 228 FTNIYVKNIDLDVTDEDFRELFEK-HGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAV 286
Query: 413 N 413
+
Sbjct: 287 D 287
>gi|345321135|ref|XP_003430388.1| PREDICTED: polyadenylate-binding protein 2-like isoform 2
[Ornithorhynchus anatinus]
Length = 338
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 194 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 250
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R ++ L ++ ++V+P +T
Sbjct: 251 EFSDK-ESVRTSMALDESLFRGRQIKVIPKRT 281
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 334 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH- 392
+APV + E++ E AR+IY N+D T +++ F CG V R+ +L D
Sbjct: 187 GVAPV----IMSIEEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFS 241
Query: 393 -HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
H A++EF ES ++ + I+V P +T
Sbjct: 242 GHPKGFAYIEFSDKESVRTSMALDESLFRGRQIKVIPKRT 281
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 18/190 (9%)
Query: 244 SRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFI 301
S S +Q+ E ++YV ++D V+E L +F G V R+C D + L +A++
Sbjct: 27 STDSDSQKVETSTASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYV 86
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTN 361
F D E R A+ L + P++ P + + +P+ R+ + I+ N
Sbjct: 87 NFND-YEAGRQAIE----KLNYTPIKGQPCRIMWSQRDPSL-------RKKGSGNIFIKN 134
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMAESAIAALNC-SGVV 418
+ + + F SV G + ++ D +S FV F E+A A++ +G++
Sbjct: 135 LHADIDNKALHDTF-SVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGML 193
Query: 419 LGSLPIRVSP 428
L + V+P
Sbjct: 194 LNGQEVYVAP 203
>gi|328783360|ref|XP_001121000.2| PREDICTED: poly(U)-binding-splicing factor half pint-like [Apis
mellifera]
Length = 592
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 10/211 (4%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ +++M S+ + QR++ + VYV I ++ E+ + F+ G +
Sbjct: 90 VLMKQTLAHQQQQMASQRNQVQRQQALALMCRVYVGSISFELKEDTIRQAFLPFGPIKSI 149
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + E A+ AL + G M+G ++V+ + + P + +
Sbjct: 150 NMSWDPVTQKHKGFAFVEY-EIPEAAQLALEQMNGVMIGGRNIKVV-GRPSNMPQAQSVI 207
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDYHHSTRIAFVEF 402
+E + R IY +I + +T+ D+K FE+ Y +L H F+E+
Sbjct: 208 DEITEESKHYNR-IYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEY 266
Query: 403 VMAESAIAALNCSGVV-LGSLPIRVSPSKTP 432
++A+ A+ + LG +RV + TP
Sbjct: 267 ETMQAALEAIASMNLFDLGGQYLRVGRAITP 297
>gi|357124786|ref|XP_003564078.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 209
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVM 404
+E + EM +R+++ N+D T +V+ F S CG V R+ +L D + A+VEFV
Sbjct: 73 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNS-CGTVNRVTILTDKFGQPKGFAYVEFVE 131
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPV----RPRAPR 439
AE+ A+ S L I+V+P +T V +PR R
Sbjct: 132 AEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPRGGR 170
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 243 NSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFI 301
N+ TS A +EE+ R+V+V ++D T E++ F CG V I D + FA++
Sbjct: 69 NATTSEA-KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYV 127
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
EF EAE + A+ L+ + L ++V P +T +
Sbjct: 128 EFV-EAEAIQEAVKLSESELHGRQIKVAPKRTNV 160
>gi|340725363|ref|XP_003401040.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Bombus
terrestris]
gi|350403872|ref|XP_003486932.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Bombus
impatiens]
Length = 592
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 10/211 (4%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ +++M S+ + QR++ + VYV I ++ E+ + F+ G +
Sbjct: 90 VLMKQTLAHQQQQMASQRNQVQRQQALALMCRVYVGSISFELKEDTIRQAFLPFGPIKSI 149
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + E A+ AL + G M+G ++V+ + + P + +
Sbjct: 150 NMSWDPVTQKHKGFAFVEY-EIPEAAQLALEQMNGVMIGGRNIKVV-GRPSNMPQAQSVI 207
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDYHHSTRIAFVEF 402
+E + R IY +I + +T+ D+K FE+ Y +L H F+E+
Sbjct: 208 DEITEESKHYNR-IYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEY 266
Query: 403 VMAESAIAALNCSGVV-LGSLPIRVSPSKTP 432
++A+ A+ + LG +RV + TP
Sbjct: 267 ETMQAALEAIASMNLFDLGGQYLRVGRAITP 297
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL-NL 316
+Y+ ++++ + + + F G +++C + D + R + F+ F D E ARAA+ +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHF-DSEEAARAAIEKV 173
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVKLF 374
G + V V+ F+PR + E+E + +Y N+ ++ T+ ++
Sbjct: 174 NGMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREM 222
Query: 375 FESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAA-LNCSGVVLG 420
FE G + +L+ D S R FV + +SA+AA + G LG
Sbjct: 223 FEPY-GRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLG 269
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + +G RA
Sbjct: 62 SLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 121
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 122 LNYTLIKGRPCRIMWSQ------------RDPALRKTGHGNVFIKNLDGAIDNKALHDTF 169
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D +S FV + AE+A A+ + +G++L
Sbjct: 170 -AAFGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLL 214
>gi|222629596|gb|EEE61728.1| hypothetical protein OsJ_16246 [Oryza sativa Japonica Group]
Length = 607
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNSVLR-- 297
R+N ++ +R++ T++V D+ VT+ L F V V ++ D ++
Sbjct: 113 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKG 172
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR---TEDEREMCA 354
+ F++F D E ARA + G + P+R+ P+ +P + E +
Sbjct: 173 YGFVKFGDPTEQARAMTEMNGMLCSSRPMRIGPAANKKTTGVQERVPNAQGAQSENDPNN 232
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAA 411
TI+ +D VT+ +K F GEV +++ R FV++V AE A+A
Sbjct: 233 TTIFVGGLDPNVTEDVLKQVFAPY-GEVVHVKI----PVGKRCGFVQYVNRPSAEQALAV 287
Query: 412 LNCSGVVLGSLPIRVS 427
L G ++G +R+S
Sbjct: 288 LQ--GTLIGGQNVRLS 301
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F RA + G +L V V F R E E EM AR
Sbjct: 143 VHFETHEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAEMGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G +R++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDEKLKEIF-CKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVD 249
>gi|359478387|ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Vitis vinifera]
Length = 438
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 95/229 (41%), Gaps = 42/229 (18%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDP 292
SFG G+RR ++ +++V D+ VT+ L F V ++ DP
Sbjct: 120 SFGIGERRPDAGP---------EHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDP 170
Query: 293 NS--VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV---LPSKTA------------- 334
N+ + F++F+DE E RA + G P+R+ P KT
Sbjct: 171 NTGRTKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKAL 230
Query: 335 ---IAPVNPTF--LPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
A P LP D + TI+ N+D VT+ ++K F S GE+ +++
Sbjct: 231 YPAPAYTTPPLQALPADND---INNTTIFVGNLDPNVTEEELKQIF-SQFGELVYVKIPA 286
Query: 390 DYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPRA 437
FV+F SA A+ G V+G L +R+S ++P +A
Sbjct: 287 ----GRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRISWGRSPTAKQA 331
>gi|291232664|ref|XP_002736265.1| PREDICTED: poly(A) binding protein, nuclear 1-like [Saccoglossus
kowalevskii]
Length = 231
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL + E+ R+VYV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 91 SLEDKVEVDARSVYVGNVDYSATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 147
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
E+ D+ + + +L L ++ ++VLP +T
Sbjct: 148 EYADK-DSVQTSLALDESLFKGRQIKVLPKRT 178
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 329 LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL 388
+ S T + P++ ED+ E+ AR++Y N+D T +++ F CG V R+ +L
Sbjct: 81 MTSPTQMTPIS------LEDKVEVDARSVYVGNVDYSATAEELEAHFHG-CGSVNRVTIL 133
Query: 389 GD--YHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
D H A++E+ +S +L + I+V P +T
Sbjct: 134 CDKFTGHPKGFAYIEYADKDSVQTSLALDESLFKGRQIKVLPKRT 178
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R++ V++ ++D+ + + + F G ++ C++ D + V + +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--- 356
F+ F E ++ + G +L V V F+PR E E+E+ +
Sbjct: 143 FVHFETEEAANKSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 191
Query: 357 --IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAA 411
+Y N + +T +K FE ++ D S FV F AE A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 412 LNCSGVVLG 420
LN V G
Sbjct: 252 LNGKEVAEG 260
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI---DNKAMY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
+ S G + ++ D ++ FV F E+A +++ +G++L + V
Sbjct: 117 DTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV 171
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD---PNSVLRFAFIEFTDEAEGARAAL 314
++YV D++ V E+QL ALF V +C D + L + ++ F + RA
Sbjct: 62 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAME 121
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
NL T++ P+RV+ S +PT R+ ++ N++ + +
Sbjct: 122 NLNFTVVNGKPIRVMFSNR-----DPTL-------RKSGLANVFIKNLEPNIDNKSLYEM 169
Query: 375 FESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
F S G + ++ D++ ++ F++F SA A+N
Sbjct: 170 FSSF-GTILSSKVATDFNGKSKGYGFIQFESESSAKDAIN 208
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 10/177 (5%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL-NL 316
VYV ++ + ++ L F G + + D N + R F F+ F +++E AR A+ NL
Sbjct: 243 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNF-EKSECARNAVKNL 301
Query: 317 AGTMLG---FYPVRVLPSKTAIAPVNPTF-LPRTEDEREMCARTIYCTNIDKKVTQADVK 372
G +G Y R A + F + + ++ +Y N+D + ++
Sbjct: 302 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 361
Query: 373 LFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESA-IAALNCSGVVLGSLPIRVS 427
FE GEV +++ D H S FV F E A A L +G ++G P+ V+
Sbjct: 362 KLFECF-GEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVA 417
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGA 310
E++ +Y+ ++D + +E L LF G+V C++ D + + F+ F +
Sbjct: 339 EKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDAN 398
Query: 311 RAALNLAGTMLGFYPVRV 328
A L + G M+G P+ V
Sbjct: 399 NAILKMNGKMVGKKPLYV 416
>gi|383861059|ref|XP_003706004.1| PREDICTED: poly(U)-binding-splicing factor half pint-like
[Megachile rotundata]
Length = 592
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 10/211 (4%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ +++M S+ + QR++ + VYV I ++ E+ + F+ G +
Sbjct: 90 VLMKQTLAHQQQQMASQRNQVQRQQALALMCRVYVGSISFELKEDTIRQAFLPFGPIKSI 149
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + E A+ AL + G M+G ++V+ + + P + +
Sbjct: 150 NMSWDPVTQKHKGFAFVEY-EIPEAAQLALEQMNGVMIGGRNIKVV-GRPSNMPQAQSVI 207
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDYHHSTRIAFVEF 402
+E + R IY +I + +T+ D+K FE+ Y +L H F+E+
Sbjct: 208 DEITEESKHYNR-IYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEY 266
Query: 403 VMAESAIAALNCSGVV-LGSLPIRVSPSKTP 432
++A+ A+ + LG +RV + TP
Sbjct: 267 ETMQAALEAIASMNLFDLGGQYLRVGRAITP 297
>gi|358399615|gb|EHK48952.1| hypothetical protein TRIATDRAFT_164478, partial [Trichoderma
atroviride IMI 206040]
Length = 571
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 87/204 (42%), Gaps = 22/204 (10%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCG-----QVVDCRICGDPNSVLRFAFIEFTDE 306
+E RRTV+V + ++ +L F G Q+V RI G V ++EF E
Sbjct: 179 DERDRRTVFVQQLAARLRTRELKEFFEKVGPVNEAQIVKDRISGRSKGV---GYVEFKSE 235
Query: 307 AEGARAALNLAGTMLGFYPVRVLPS-----KTAIAPVNPTFLPRTEDEREMCARTIYCTN 361
+ + AL L G L PV V + + A P + + P + + +Y N
Sbjct: 236 -DAVQQALQLTGQKLLGIPVIVQHTEAEKNRQARNPDSTSGHPNS-----IPFHRLYVGN 289
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
I VT+ D++ FE GE+ ++L D + +R FV+F A A AL +G L
Sbjct: 290 IHFNVTEQDLQAVFEPF-GELEFVQLQKDDNGRSRGYGFVQFRDAGQAREALEKMNGFDL 348
Query: 420 GSLPIRVSPSKTPVRPRAPRLPMH 443
PIRV P + MH
Sbjct: 349 AGRPIRVGLGNDKFTPESTANLMH 372
>gi|357138034|ref|XP_003570603.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 216
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVM 404
E + ++ AR++Y N+D T +V+ F++ CG V R+ +L D + A+VEF+
Sbjct: 81 AEAKEQVDARSVYVGNVDYACTPEEVQQHFQA-CGTVNRVTILTDKFGQPKGFAYVEFLE 139
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPV---RPRAPR 439
E+ ALN + L I+VSP +T V + R PR
Sbjct: 140 QEAVQEALNLNESELHGRQIKVSPKRTNVPGMKQRPPR 177
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 243 NSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFI 301
N+ T+ A +E++ R+VYV ++D T E++ F CG V I D + FA++
Sbjct: 77 NASTAEA-KEQVDARSVYVGNVDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYV 135
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
EF E E + ALNL + L ++V P +T +
Sbjct: 136 EFL-EQEAVQEALNLNESELHGRQIKVSPKRTNV 168
>gi|123485827|ref|XP_001324580.1| spliceosomal protein [Trichomonas vaginalis G3]
gi|121907465|gb|EAY12357.1| spliceosomal protein, putative [Trichomonas vaginalis G3]
Length = 221
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 21/177 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
T+++ DI + VTEE L LF+ G VV I D N + +AF+EF E + A
Sbjct: 13 TLFLCDISEHVTEEILTELFMQVGPVVFVNIPRDRITNRMNGYAFVEFRTEQDCMYALSV 72
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ G L P+++ + T P T DE ++ A+ +Y N+ + V ++ F
Sbjct: 73 MQGVKLFGVPLKLSANST----------PSTGDELDVGAK-LYIGNLSQDVNDGNLLQTF 121
Query: 376 ESVCGEVYRLRLLGDYHHSTR-----IAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427
G V R++ D +A+ F A+ A A+N G G PI VS
Sbjct: 122 RQF-GNVLHARVVVDPATGKSLGHGFVAYDSFDAADKAKKAMN--GEYFGGQPITVS 175
>gi|195574479|ref|XP_002105216.1| GD21365 [Drosophila simulans]
gi|194201143|gb|EDX14719.1| GD21365 [Drosophila simulans]
Length = 363
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
++V D+ ++ +QL F G++ DCR+ DP ++ + F+ F ++E A +
Sbjct: 99 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 158
Query: 317 AGTMLGF------YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT--- 367
G LG + R P+ A P ++ T+YC I+ ++
Sbjct: 159 NGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFL 218
Query: 368 --QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
+ K F S G + +R+ D + AFV F E+A A+
Sbjct: 219 NEEILQKTF--SPYGTIQEIRVFKDKGY----AFVRFSTKEAATHAI 259
>gi|147907300|ref|NP_001080719.1| polyadenylate-binding protein 2-B [Xenopus laevis]
gi|82241535|sp|Q7ZXB8.1|PAB2B_XENLA RecName: Full=Polyadenylate-binding protein 2-B; Short=PABP-2-B;
Short=Poly(A)-binding protein 2-B; AltName: Full=Nuclear
poly(A)-binding protein 1-B; AltName:
Full=Poly(A)-binding protein II-B; Short=PABII-B;
AltName: Full=Polyadenylate-binding nuclear protein 1-B;
AltName: Full=XLnPABP2-B; AltName: Full=nPABP2-B;
AltName: Full=xPABPII-B
gi|27924235|gb|AAH45063.1| Pabpn1-prov protein [Xenopus laevis]
Length = 295
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 152 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 208
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 209 EFSDK-ESVRTSLALDESLFRGRQIKVVPKRT 239
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 154 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFTGHPKGFAYIEFSD 212
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 213 KESVRTSLALDESLFRGRQIKVVPKRT 239
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L +F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S R R I+ N++ + D K +
Sbjct: 72 MNFEMIKGQPIRIMWSH------------RDPGLRRSGMGNIFIKNLENSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVLGSLPIR 425
+ S G + +++ + H S FV F E+A A+N +G++L +R
Sbjct: 117 DTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVR 169
>gi|380016392|ref|XP_003692169.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Apis
florea]
Length = 592
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 10/211 (4%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ +++M S+ + QR++ + VYV I ++ E+ + F+ G +
Sbjct: 90 VLMKQTLAHQQQQMASQRNQVQRQQALALMCRVYVGSISFELKEDTIRQAFLPFGPIKSI 149
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + E A+ AL + G M+G ++V+ + + P + +
Sbjct: 150 NMSWDPVTQKHKGFAFVEY-EIPEAAQLALEQMNGVMIGGRNIKVV-GRPSNMPQAQSVI 207
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDYHHSTRIAFVEF 402
+E + R IY +I + +T+ D+K FE+ Y +L H F+E+
Sbjct: 208 DEITEESKHYNR-IYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEY 266
Query: 403 VMAESAIAALNCSGVV-LGSLPIRVSPSKTP 432
++A+ A+ + LG +RV + TP
Sbjct: 267 ETMQAALEAIASMNLFDLGGQYLRVGRAITP 297
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R++ V++ ++D+ + + + F G ++ C++ D + V + +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--- 356
F+ F E ++ + G +L V V F+PR E E+E+ +
Sbjct: 143 FVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 191
Query: 357 --IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAA 411
+Y N + +T +K FE ++ D S FV F AE A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 412 LNCSGVVLG 420
LN V G
Sbjct: 252 LNGKEVAEG 260
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI---DNKAMY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
+ S G + ++ D ++ FV F E+A +++ +G++L + V
Sbjct: 117 DTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
>gi|320585953|gb|EFW98632.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Grosmannia clavigera kw1407]
Length = 488
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 20/180 (11%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEAEGAR 311
E +R +YV +DQ+VTE+ L +F G V + +I D N+ + F+E+ D R
Sbjct: 83 EPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAER 142
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR-TIYCTNIDKKVTQAD 370
A NL G + +R VN + T + + I+ ++ +V
Sbjct: 143 AMQNLNGRRVHQSEIR----------VNWAYQSNTTSKEDTSGHFHIFVGDLSNEVNDEV 192
Query: 371 VKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEF---VMAESAIAALNCSGVVLGSLPIR 425
+ F S G V R++ D S FV F AE A+++++ G LGS IR
Sbjct: 193 LTQAFTSF-GSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMD--GEWLGSRAIR 249
>gi|313235350|emb|CBY19695.1| unnamed protein product [Oikopleura dioica]
Length = 208
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
++ ++ E R++YV ++ T E+L F GCG + + C + G P FA+I
Sbjct: 80 TMEEKMETDNRSIYVGQVEYATTAEELEQHFHGCGALNRVTIICDKFSGHPKG---FAYI 136
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EFT E E A+L L G++L ++V+P +T
Sbjct: 137 EFT-EKESVDASLALDGSILCGRQIKVMPKRT 167
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 20/176 (11%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDE 306
A R E ++Y+ D+ VTE L F G ++ R+C D + L +A+I F
Sbjct: 3 ATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 307 AEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV 366
A+ RA + ++ P+R++ S+ R R+ ++ N+D +
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQ------------RDPGLRKSGVGNVFIKNLDDSI 110
Query: 367 TQADVKLFFE--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
D K ++ S G++ +++ D + S FV F E+A A+ +G++L
Sbjct: 111 ---DNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLL 163
>gi|255544854|ref|XP_002513488.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223547396|gb|EEF48891.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 412
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 92/221 (41%), Gaps = 34/221 (15%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDP 292
SFG G+RR ++ +++V D+ VT+ L F V ++ DP
Sbjct: 101 SFGIGERRPDAGP---------EHSIFVGDLSPDVTDYLLQETFRANYPSVRGAKVVTDP 151
Query: 293 NSVLR--FAFIEFTDEAEGARAALNLAGTMLGFYPVRV---LPSKTA-----------IA 336
N+ + F++F DE E RA + G P+R+ P KTA I
Sbjct: 152 NTGRSKGYGFVKFGDENERNRAMTEMNGVFCSTRPMRISAATPKKTAAYQQQYATAKAIY 211
Query: 337 PVNPTFLPR--TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHS 394
P+ P + ++ TI+ N+D VT+ +++ F GE+ +++
Sbjct: 212 PLPAYTAPVQVVPADNDITNTTIFVGNLDPNVTEEELRPIFLQF-GEIVYVKI----PVG 266
Query: 395 TRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVR 434
FV+F SA A+ G V+G P+R+S + R
Sbjct: 267 RGCGFVQFATRASAEEAIQRMQGHVIGQQPVRISWGRKQAR 307
>gi|115467128|ref|NP_001057163.1| Os06g0219600 [Oryza sativa Japonica Group]
gi|51535367|dbj|BAD37238.1| putative poly(A) binding protein II [Oryza sativa Japonica Group]
gi|113595203|dbj|BAF19077.1| Os06g0219600 [Oryza sativa Japonica Group]
gi|215704439|dbj|BAG93873.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765746|dbj|BAG87443.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222635211|gb|EEE65343.1| hypothetical protein OsJ_20615 [Oryza sativa Japonica Group]
Length = 204
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVM 404
+E + EM AR++Y N+D T +V+ F S CG V R+ +L D + A+VEF+
Sbjct: 73 SESKEEMDARSVYVGNVDYACTPEEVQQHFNS-CGTVNRVTILTDKFGQPKGFAYVEFLE 131
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPV----RPRAPR 439
E+ A+ + L I+V+P +T V +PR R
Sbjct: 132 VEAVQEAVKLNESELHGRQIKVAPKRTNVPGMKQPRGGR 170
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFT 304
+S +EE+ R+VYV ++D T E++ F CG V I D + FA++EF
Sbjct: 71 SSSESKEEMDARSVYVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFL 130
Query: 305 DEAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
E E + A+ L + L ++V P +T +
Sbjct: 131 -EVEAVQEAVKLNESELHGRQIKVAPKRTNV 160
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NS 294
Q ++ + S +Q E ++YV D++ V+E L +F G V R+C D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA 354
L +A++ F D G +A L + P++ + + +P+ R+ +
Sbjct: 78 SLGYAYVNFNDHEAGRKAI-----EQLNYTPIKGRLCRIMWSQRDPSL-------RKKGS 125
Query: 355 RTIYCTNIDKKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR----IAFVEFVMAESA 408
I+ N+ + D K ++ SV G++ ++ D + ++ + F E A+ A
Sbjct: 126 GNIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEA 182
Query: 409 IAALNCSGVVLGSLPIRVSP 428
I ALN G++L I V+P
Sbjct: 183 IDALN--GMLLNGQEIYVAP 200
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F+ A+ RA
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N + +K F+ G+ ++++ D +R FV + E A A+
Sbjct: 192 NVYIKNFGDDMDDERLKEIFDKY-GKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAV 248
>gi|342837655|tpg|DAA34917.1| TPA_inf: embryonic lethal abnormal vision 1-like protein [Schmidtea
mediterranea]
Length = 466
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 32/190 (16%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAA 313
+ + V+ + +T+E++ ALF G+V C++ D + L +AF++F + +A
Sbjct: 102 KTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFVRPNDAEKAI 161
Query: 314 LNLAGTMLGFYPVRVL---PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
L G L ++V PS +I N +Y + KK+TQ +
Sbjct: 162 KTLNGLRLQNKTIKVSLARPSSESIKGAN-----------------LYICGLPKKMTQVE 204
Query: 371 VKLFFESVCGEVYRLRLLGDYHH--STRIAFVEF---VMAESAIAALNCSGVVLGSLPIR 425
++ F S CG++ R+L D S +AF+ F AE AI LN S PI
Sbjct: 205 LEEQF-SQCGKIITARILYDNKTGLSRGVAFIRFDQRCEAEMAIKKLNGHMPDNSSEPIT 263
Query: 426 V----SPSKT 431
V SPS T
Sbjct: 264 VKFANSPSTT 273
>gi|427796107|gb|JAA63505.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 505
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAA 313
++TV+V ++ +V +E+L LF CG VV R+ D + + F F+ F + +GA A
Sbjct: 341 KQTVFVGNLAHEVQDEELWKLFAECGDVVAVRLVRDKVTGMGKGFGFVTFK-QMDGAALA 399
Query: 314 LNLAGTMLGFYPVRVLP-SKTAI 335
L + G + P+RV P SK A+
Sbjct: 400 LEMTGREVSGRPIRVSPFSKQAV 422
>gi|313247139|emb|CBY35961.1| unnamed protein product [Oikopleura dioica]
Length = 208
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
++ ++ E R++YV ++ T E+L F GCG + + C + G P FA+I
Sbjct: 80 TMEEKMETDNRSIYVGQVEYATTAEELEQHFHGCGALNRVTIICDKFSGHPKG---FAYI 136
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EFT E E A+L L G++L ++V+P +T
Sbjct: 137 EFT-EKESVDASLALDGSILCGRQIKVMPKRT 167
>gi|357138032|ref|XP_003570602.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 210
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVM 404
E + ++ AR++Y N+D T +V+ F++ CG V R+ +L D + A+VEF+
Sbjct: 75 AEAKEQVDARSVYVGNVDYACTPEEVQQHFQA-CGTVNRVTILTDKFGQPKGFAYVEFLE 133
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPV---RPRAPR 439
E+ ALN + L I+VSP +T V + R PR
Sbjct: 134 QEAVQEALNLNESELHGRQIKVSPKRTNVPGMKQRPPR 171
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 243 NSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFI 301
N+ T+ A +E++ R+VYV ++D T E++ F CG V I D + FA++
Sbjct: 71 NASTAEA-KEQVDARSVYVGNVDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYV 129
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
EF E E + ALNL + L ++V P +T +
Sbjct: 130 EFL-EQEAVQEALNLNESELHGRQIKVSPKRTNV 162
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 17/174 (9%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALNL 316
+YV ++D VTE L +F G V R+C D + L +A++ + + A+G RA L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+++ R++ S+ R R+ I+ N+D+ + + F
Sbjct: 110 NYSLIKGRACRIMWSQ------------RDPALRKTGQGNIFIKNLDEGIDNKALHDTF- 156
Query: 377 SVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALNC-SGVVLGSLPIRVSP 428
+ G V ++ D H S FV + AE+A A+ +G++L + V P
Sbjct: 157 AAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGP 210
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T +++ ++D+ + + L F G V+ C++ D + + +
Sbjct: 120 RIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYG 179
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE---REMCAR- 355
F+ + + AE A A+ ML + K + P + R E + EM A+
Sbjct: 180 FVHY-ETAEAADTAIKAVNGML------LNDKKVYVGP----HISRKERQSKIEEMKAQF 228
Query: 356 -TIYCTNIDKKVTQADVKLFFE 376
+Y NID +VT + + FE
Sbjct: 229 TNVYVKNIDAEVTDEEFRQLFE 250
>gi|428174818|gb|EKX43711.1| hypothetical protein GUITHDRAFT_163728 [Guillardia theta CCMP2712]
Length = 501
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAAL 314
RT++V+ + ++ E L F G+VVD RI D + A++EF ++ E AA+
Sbjct: 154 RTIFVAQVARKADERDLFQFFSEAGKVVDVRIIKDTQTRRSKGIAYVEF-EKQEQCVAAV 212
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
+G +L +PV V+ + A + E ++ A+ + N+ + + D++
Sbjct: 213 QKSGQLLCGFPV-VVQASQAEKNQAARLAAQVAGELDLPAK-LQVDNLHMDIAEDDLQTL 270
Query: 375 FESVCGEVYRLRLLGDYHHSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRV 426
F S G+V +R+ ++ ST VEF A+ A+A LN + +L +R+
Sbjct: 271 F-SPFGKVLSVRINKEHGRSTGKGVVEFKTLQDAQKAVAHLNGFDLAGKALNVRI 324
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 349 EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAE 406
+R+M RTI+ + +K + D+ FF S G+V +R++ D S IA+VEF E
Sbjct: 150 DRDM--RTIFVAQVARKADERDLFQFF-SEAGKVVDVRIIKDTQTRRSKGIAYVEFEKQE 206
Query: 407 SAIAALNCSGVVLGSLPIRVSPSKT 431
+AA+ SG +L P+ V S+
Sbjct: 207 QCVAAVQKSGQLLCGFPVVVQASQA 231
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R++ V++ ++D+ + + + F G ++ C++ D + V + +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--- 356
F+ F E ++ + G +L V V F+PR E E+E+ +
Sbjct: 143 FVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 191
Query: 357 --IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAA 411
+Y N + +T +K FE ++ D S FV F AE A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 412 LNCSGVVLG 420
LN V G
Sbjct: 252 LNGKEVAEG 260
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI---DNKAMY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
+ S G + ++ D ++ FV F E+A +++ +G++L + V
Sbjct: 117 DTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R++ V++ ++D+ + + + F G ++ C++ D + V + +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--- 356
F+ F E ++ + G +L V V F+PR E E+E+ +
Sbjct: 143 FVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 191
Query: 357 --IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAA 411
+Y N + +T +K FE ++ D S FV F AE A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 412 LNCSGVVLG 420
LN V G
Sbjct: 252 LNGKEVAEG 260
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI---DNKAMY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVL 419
+ S G + ++ D ++ FV F E+A +++ +G++L
Sbjct: 117 DTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLL 164
>gi|47575772|ref|NP_001001230.1| polyadenylate-binding protein 2 [Xenopus (Silurana) tropicalis]
gi|82237242|sp|Q6NVP7.1|PABP2_XENTR RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName: Full=Nuclear
poly(A)-binding protein 1; AltName: Full=Poly(A)-binding
protein II; Short=PABII; AltName:
Full=Polyadenylate-binding nuclear protein 1
gi|45708904|gb|AAH67958.1| poly(A) binding protein, nuclear 1 [Xenopus (Silurana) tropicalis]
gi|89268254|emb|CAJ82538.1| poly(A) binding protein, nuclear 1 [Xenopus (Silurana) tropicalis]
Length = 296
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 153 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYI 209
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 210 EFSDK-ESVRTSLALDESLFRGRQIKVVPKRT 240
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D + H A++EF
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKYTGHPKGFAYIEFSD 213
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 214 KESVRTSLALDESLFRGRQIKVVPKRT 240
>gi|452840300|gb|EME42238.1| hypothetical protein DOTSEDRAFT_73158 [Dothistroma septosporum
NZE10]
Length = 379
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
+ V ++ +VT++ L F G V R+ D + F F+EFTD +G +AA +
Sbjct: 245 IMVGNLAGEVTDDSLTKAFANYG-VNKARVIRDKRTTKSKGFGFVEFTDGEQGFKAAREM 303
Query: 317 AGTMLGFYPVRVLPSKTAIAPV 338
+G +G +PV + ++T +AP+
Sbjct: 304 SGKYIGSHPVTIQRARTNVAPI 325
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R++ V++ ++D+ + + + F G ++ C++ D + V + +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--- 356
F+ F E ++ + G +L V V F+PR E E+E+ +
Sbjct: 143 FVHFETEEAANKSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 191
Query: 357 --IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAA 411
+Y N + +T +K FE ++ D S FV F AE A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 412 LNCSGVVLG 420
LN V G
Sbjct: 252 LNGKEVAEG 260
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI---DNKAMY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
+ S G + ++ D ++ FV F E+A +++ +G++L + V
Sbjct: 117 DTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV 171
>gi|146165272|ref|XP_001014712.2| hypothetical protein TTHERM_00047170 [Tetrahymena thermophila]
gi|146145520|gb|EAR94568.2| hypothetical protein TTHERM_00047170 [Tetrahymena thermophila
SB210]
Length = 261
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 238 GKRRMNSRTSLAQREE---IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRI--CGDP 292
GK+ S T++ +E ++R+V+VS + + + F CG + + ++ D
Sbjct: 2 GKKVEQSNTTVEVQENNDPSLKRSVFVSGLPYSADTDAIKEYFQNCGTIENIKLPRYQDT 61
Query: 293 NSVLRFAFIEFTDEAEGARAALNLAGTMLG--FYPVRVLPSKTAIAPVNPTFLPRTEDER 350
++ + + F+ E A+ A+ L ++ + + + + + N P
Sbjct: 62 GKIIGYCHLVFSTPEE-AQEAIKLNKQVMNGRYLDISLAKGEKKVEYKNDVKAP------ 114
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR----IAFVEFVMAE 406
E C TI+ N+ T+ +V FFE CG+V +R + YH+S + AF+EF M
Sbjct: 115 EDCT-TIFVKNLAFDCTEDEVGEFFEK-CGKVVNVRFV--YHYSQKHFKGFAFIEFKMNS 170
Query: 407 SAIAALNCSGV 417
S AAL +G
Sbjct: 171 SVNAALKLNGT 181
>gi|296425387|ref|XP_002842223.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638484|emb|CAZ86414.1| unnamed protein product [Tuber melanosporum]
Length = 1133
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEAEGARAALNL 316
T+YV++ E + LF CG++VD R NS RF +++F E A+ A +L
Sbjct: 747 TLYVTNFPPTADETCIRDLFKDCGEIVDIRFPSLKYNSHRRFCYVQFASSDE-AQKATSL 805
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMC---ARTIYCTNIDKKVTQADVKL 373
G LG +T +A ++ P + ER R +Y NID + DV+
Sbjct: 806 HGKQLG-------GKETLVAKISA---PDQKHERSGAVYEGREVYIRNIDFQAHDNDVQE 855
Query: 374 FFESVCGEVYRLRLLGDYHHSTR--IAFVEFVMAESAIAAL 412
F+ G + ++RL T FV F E A+AA+
Sbjct: 856 LFQKY-GRIEKVRLPPGPKKGTHKGYGFVTFSAKEEALAAV 895
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL-NL 316
+Y+ ++++ + + + F G +++C + D + R + F+ F D E ARAA+ +
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHF-DSEEAARAAIEKV 163
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVKLF 374
G + V V+ F+PR + E+E + +Y N+ ++ T+ ++
Sbjct: 164 NGMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREM 212
Query: 375 FESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAA-LNCSGVVLG 420
FE G + +L+ D S + FV F +SA+AA + G LG
Sbjct: 213 FEPY-GRITSHKLMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLG 259
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 22/174 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESA 408
+Y N + +K F S G+ ++++ D ++ FV F E A
Sbjct: 192 NVYIKNFGDDMDDERLKELF-SKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDA 244
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 22/163 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE+ L F G V+ RIC D L +A++ F A+ RA
Sbjct: 110 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALDT 169
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ + P+R++ S+ R R+ ++ N+D+ + D K +
Sbjct: 170 MNFDTIKGKPIRLMWSQ------------RDAYLRKSGIGNVFIKNLDRSI---DNKTLY 214
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALN 413
E S G++ +++ D S AFV F + A+ AI +N
Sbjct: 215 EHFSAFGKILSSKVMSDDQGSRGYAFVHFQNQIAADRAIEEMN 257
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NS 294
Q ++ + S +Q E ++YV D++ V+E L +F G V R+C D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA 354
L +A++ F D G +A L + P++ + + +P+ R+ +
Sbjct: 78 SLGYAYVNFNDHEAGRKAI-----EQLNYTPIKGRLCRIMWSQRDPSL-------RKKGS 125
Query: 355 RTIYCTNIDKKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR----IAFVEFVMAESA 408
I+ N+ + D K ++ SV G++ ++ D + ++ + F E A+ A
Sbjct: 126 GNIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEA 182
Query: 409 IAALNCSGVVLGSLPIRVSP 428
I ALN G++L I V+P
Sbjct: 183 IDALN--GMLLNGQEIYVAP 200
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NS 294
Q ++ + S +Q E ++YV D++ V+E L +F G V R+C D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA 354
L +A++ F D G +A L + P++ + + +P+ R+ +
Sbjct: 78 SLGYAYVNFNDHEAGRKAI-----EQLNYTPIKGRLCRIMWSQRDPSL-------RKKGS 125
Query: 355 RTIYCTNIDKKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR----IAFVEFVMAESA 408
I+ N+ + D K ++ SV G++ ++ D + ++ + F E A+ A
Sbjct: 126 GNIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEA 182
Query: 409 IAALNCSGVVLGSLPIRVSP 428
I ALN G++L I V+P
Sbjct: 183 IDALN--GMLLNGQEIYVAP 200
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 21/187 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++Y+ D+ VTE L F G V+ R+C D S L +A++ F A+ RA
Sbjct: 53 SLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 112
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ + P+R++ S+ R R I+ N+D+ + + F
Sbjct: 113 MNFETIHGRPMRIMWSQ------------RDPAARRAGNGNIFIKNLDRVIDNKSIYDTF 160
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESA-IAALNCSGVVLGSLPIRVSPSKTPV 433
S+ G + ++ D S+R FV F ESA IA +G++L + V +T
Sbjct: 161 -SLFGNILSCKVAADEDGSSRGYGFVHFETEESAQIAIEKVNGMLLSGKKVYVGKFQT-- 217
Query: 434 RPRAPRL 440
RA RL
Sbjct: 218 --RAQRL 222
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 245 RTSLAQREEIIRR----TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R A ++E ++R +YV +ID+++T+E L A F G + ++ D N + F
Sbjct: 322 RKYEALKQERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVDENGRSKGFG 381
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRV 328
F+ F E A + M+G P+ V
Sbjct: 382 FVCFEKPEEATAAVTEMNSKMMGSKPLYV 410
>gi|162312303|ref|NP_596601.2| mRNA processing factor (predicted) [Schizosaccharomyces pombe
972h-]
gi|26401571|sp|O60176.2|YG41_SCHPO RecName: Full=Uncharacterized RNA-binding protein C23E6.01c
gi|157310462|emb|CAB83010.2| mRNA processing factor (predicted) [Schizosaccharomyces pombe]
Length = 473
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 29/211 (13%)
Query: 241 RMNSRTSLAQREEIIRR----TVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSV 295
++N + RE+ I + +++V D+ V E + +LF +I DP +
Sbjct: 166 KLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTN 225
Query: 296 LR--FAFIEFTDEAEGARAALNLAGTMLGFYPVRV---LPSKTA--IAPVN--PTFLP-- 344
+ + F+ FTDE + A + G + G P+RV P A +PVN P +P
Sbjct: 226 VSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPV 285
Query: 345 -------RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI 397
+ T++ + K V++ ++K F++ GE+ +++
Sbjct: 286 GFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNF-GEIVYVKI----PPGKGC 340
Query: 398 AFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
FV+FV +SA A+N G LG+ IR+S
Sbjct: 341 GFVQFVNRQSAEIAINQLQGYPLGNSRIRLS 371
>gi|313214618|emb|CBY40937.1| unnamed protein product [Oikopleura dioica]
gi|313226203|emb|CBY21346.1| unnamed protein product [Oikopleura dioica]
Length = 208
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
+L ++ + R++Y+ +D T E+L F GCG + + C + G P FA+I
Sbjct: 78 TLEEKVDADNRSIYIGQVDYSSTAEELEQHFHGCGALNRVTIICDKYSGQPKG---FAYI 134
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 341
EFT E E AA+ L G+M ++V+P +T V+ T
Sbjct: 135 EFT-EKESVDAAIALDGSMFRDRQIKVMPKRTNKPGVSST 173
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NS 294
Q ++ + S +Q E ++YV D++ V+E L +F G V R+C D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA 354
L +A++ F D G +A L + P++ + + +P+ R+ +
Sbjct: 78 SLGYAYVNFNDHEAGRKAI-----EQLNYTPIKGRLCRIMWSQRDPSL-------RKKGS 125
Query: 355 RTIYCTNIDKKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR----IAFVEFVMAESA 408
I+ N+ + D K ++ SV G++ ++ D + ++ + F E A+ A
Sbjct: 126 GNIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEA 182
Query: 409 IAALNCSGVVLGSLPIRVSP 428
I ALN G++L I V+P
Sbjct: 183 IDALN--GMLLNGQEIYVAP 200
>gi|270010566|gb|EFA07014.1| hypothetical protein TcasGA2_TC009984 [Tribolium castaneum]
Length = 225
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC-----GDPNSVLRFAFI 301
SL ++ E+ R++YV ++D T E+L F GCG + I G P FA+I
Sbjct: 88 SLEEKMEVDNRSIYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKG---FAYI 144
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF D + + A+ + ++ P++V+P +T
Sbjct: 145 EFGDR-DSVQTAMAMDESLFRGRPIKVMPKRT 175
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E+ R+IY N+D T +++ F CG + R+ +L + + H A++EF
Sbjct: 90 EEKMEVDNRSIYVGNVDYGATAEELEQHFHG-CGSINRVTILCNKYDGHPKGFAYIEFGD 148
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
+S A+ + PI+V P +T
Sbjct: 149 RDSVQTAMAMDESLFRGRPIKVMPKRT 175
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ I+ N+D + D K +
Sbjct: 72 MNFEVIKGRPIRIMWSQ------------RDPGLRKSGIGNIFIKNLDDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D + S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVVCDENGSRGFGFVHFETHEAANQAINTMNGMLL 163
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D + + L F G ++ C++ D N F F
Sbjct: 83 RIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDENGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A A+N ML + K + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAANQAINTMNGML------LNDRKVFVG----HFKSRQEREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL- 412
NI K + D+ +LF S G+ ++++ D + +R FV F E A A+
Sbjct: 192 NIYVKNFEGDMDDECLQELF--SQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVS 249
Query: 413 NCSGVVLG 420
N +G LG
Sbjct: 250 NMNGKELG 257
>gi|225449617|ref|XP_002279438.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
gi|296086279|emb|CBI31720.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 11/172 (6%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQV--VDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
VYV I TE+ + + F CG + VDC + + A I F EA A+ AL L
Sbjct: 184 VYVGGIPYYSTEDDIRSYFDSCGTITEVDCMMFPESGKFRGIAIISFKTEA-AAKRALAL 242
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVKLF 374
G +G +++ P KT A + F P EM IY N+ +T+ +V+ F
Sbjct: 243 DGADMGGLFLKIQPYKTTRANKSSDFAP------EMVEGYNRIYVGNLPWDITEDEVRKF 296
Query: 375 FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
F R + + A V+F S AL ++ P ++
Sbjct: 297 FSRCNVSSIRFGMDKETQEFRGYAHVDFSDNPSLTMALKLDQEIVCGRPAKI 348
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ + P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDTIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + ++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKIASDENGSKGYGFVHFETEEAARQAIEKVNGMLL 163
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 21/187 (11%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C+I D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIASDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTML----GFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART 356
+ F E E AR A+ ML Y + +P K IA + ++
Sbjct: 143 VHFETE-EAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALLG---------DKMKRFNN 192
Query: 357 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NC 414
+Y N ++ ++ F+ G++ +++ D +R FV + E+A A+ N
Sbjct: 193 VYIKNFGDELDDDKIRELFDPF-GKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNL 251
Query: 415 SGVVLGS 421
+G+ LG
Sbjct: 252 NGMELGG 258
>gi|358386930|gb|EHK24525.1| hypothetical protein TRIVIDRAFT_71881 [Trichoderma virens Gv29-8]
Length = 571
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 86/204 (42%), Gaps = 22/204 (10%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCG-----QVVDCRICGDPNSVLRFAFIEFTDE 306
+E RRTV+V + ++ +L F G Q+V RI G V ++EF +E
Sbjct: 180 DERDRRTVFVQQLAARLRTRELKEFFEKVGAVNEAQIVKDRISGRSKGV---GYVEFKNE 236
Query: 307 AEGARAALNLAGTMLGFYPVRVLPS-----KTAIAPVNPTFLPRTEDEREMCARTIYCTN 361
+ + AL L G L PV V + + A P P + + +Y N
Sbjct: 237 -DSVQLALQLTGQKLLGIPVIVQHTEAEKNRQARNPDASNGHPNS-----IPFHRLYVGN 290
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
I VT+ D++ FE GE+ ++L D + +R FV+F A A AL +G L
Sbjct: 291 IHFNVTEQDLQAVFEPF-GELEFVQLQKDDNGRSRGYGFVQFRDAGQAREALEKMNGFDL 349
Query: 420 GSLPIRVSPSKTPVRPRAPRLPMH 443
PIRV P + MH
Sbjct: 350 AGRPIRVGLGNDKFTPESTANLMH 373
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R++ V++ ++D+ + + + F G ++ C++ D + V + +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--- 356
F+ F E ++ + G +L V V F+PR E E+E+ +
Sbjct: 143 FVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 191
Query: 357 --IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAA 411
+Y N + +T +K FE ++ D S FV F AE A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 412 LNCSGVVLG 420
LN V G
Sbjct: 252 LNGKEVAEG 260
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI---DNKAMY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
+ S G + ++ D ++ FV F E+A +++ +G++L + V
Sbjct: 117 DTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R++ V++ ++D+ + + + F G ++ C++ D + V + +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--- 356
F+ F E ++ + G +L V V F+PR E E+E+ +
Sbjct: 143 FVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 191
Query: 357 --IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAA 411
+Y N + +T +K FE ++ D S FV F AE A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 412 LNCSGVVLG 420
LN V G
Sbjct: 252 LNGKEVAEG 260
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI---DNKAMY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426
+ S G + ++ D ++ FV F E+A +++ +G++L + V
Sbjct: 117 DTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDE 306
+Q+ E ++YV ++D V+E L +F G V R+C D + L +A++ F D
Sbjct: 34 SQKVETSSASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDH 93
Query: 307 AEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV 366
G A L + P++ +P + + +P+ R+ + I+ N+ +
Sbjct: 94 EAGKTAI-----EKLNYAPIKGVPCRIMWSQRDPSM-------RKKGSGNIFIKNLHPDI 141
Query: 367 TQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVLGSLPI 424
+ F SV G + ++ D ++R FV F E+A A++ +G++L +
Sbjct: 142 DNKALHDTF-SVFGNILSCKIATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEV 200
Query: 425 RVS 427
V+
Sbjct: 201 YVA 203
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R++ V++ ++D+ + + + F G ++ C++ D + V + +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYG 142
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--- 356
F+ F E ++ + G +L V V F+PR E E+E+ +
Sbjct: 143 FVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 191
Query: 357 --IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAA 411
+Y N + +T +K FE ++ D S FV F AE A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 412 LNCSGVVLG 420
LN V G
Sbjct: 252 LNGKEVAEG 260
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI---DNKAMY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVL 419
+ S G + ++ D ++ FV F E+A +++ +G++L
Sbjct: 117 DTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLL 164
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 22/163 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+D +VTE+ L F G V+ RIC D L +A++ F A+ RA
Sbjct: 149 SLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLADAQRALDT 208
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ +L P+R++ S+ R R+ ++ N+D+ V D K F
Sbjct: 209 MNFDVLRGRPLRLMWSQ------------RDAHLRKSGVGNVFIKNLDRSV---DDKALF 253
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALN 413
E S G++ +++ D S AFV F A+ AI +N
Sbjct: 254 ERFSAFGKILSSKVVSDERGSRGYAFVHFQEQSAADRAIEHMN 296
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 237 QGKRRMNSRTSLAQREEI-IRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD 291
+ +R+ R + QR++ +RR +YV ++D V E++L F G G V +I +
Sbjct: 406 KAERQAELRRAFEQRQQDGLRRAQGAKLYVKNLDDAVDEDRLRREFSGFGAVSRVKIMRE 465
Query: 292 PNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDERE 351
F I F+ E ARA + G +LG P+ + A+A PR
Sbjct: 466 EGRSKGFGLICFSSADEAARALAEMNGRVLGSKPLSI-----ALAQSRRCLQPRGLAAAG 520
Query: 352 MCAR 355
C+R
Sbjct: 521 PCSR 524
>gi|218191015|gb|EEC73442.1| hypothetical protein OsI_07730 [Oryza sativa Indica Group]
Length = 312
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 15/183 (8%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVV-DCRICGDPNSVLR--FAFIEFTDEAEGARAAL 314
+++V D+ VT+E L LF + V ++ D N+ + F+ F D+ + A
Sbjct: 84 SIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMT 143
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
+ G P+R+ P+ + + P + + + RTIY +D T+ +++
Sbjct: 144 EMNGAYCSTRPIRIGPATPRRSSGDSGSSPPRQSDSDSTNRTIYVGGLDPNATEDELRKA 203
Query: 375 FESVCGEVYRLRL-LGDYHHSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSK 430
F G++ +++ +G + FV+FV AE A+ LN G +G +R+S +
Sbjct: 204 FAKY-GDLASVKIPVG-----KQCGFVQFVNRPDAEEALQGLN--GSTIGKQAVRLSWGR 255
Query: 431 TPV 433
+P
Sbjct: 256 SPA 258
>gi|307195017|gb|EFN77085.1| Poly(U)-binding-splicing factor half pint [Harpegnathos saltator]
Length = 561
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 10/211 (4%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ +++M S+ + QR++ + VYV I ++ E+ + F+ G +
Sbjct: 60 VLMKQTLAHQQQQMASQRNQVQRQQALALMCRVYVGSISFELKEDTIRQAFLPFGPIKSI 119
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + E A+ AL + G M+G ++V+ + + P + +
Sbjct: 120 NMSWDPVTQKHKGFAFVEY-EIPEAAQLALEQMNGVMIGGRNIKVV-GRPSNMPQAQSVI 177
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDYHHSTRIAFVEF 402
+E + R IY +I + +T+ D+K FE+ Y +L H F+E+
Sbjct: 178 DEITEESKHYNR-IYIASIHQDLTEEDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEY 236
Query: 403 VMAESAIAALNCSGVV-LGSLPIRVSPSKTP 432
++A+ A+ + LG +RV + TP
Sbjct: 237 ETMQAALEAIASMNLFDLGGQYLRVGRAITP 267
>gi|449664731|ref|XP_002156267.2| PREDICTED: nucleolysin TIA-1 isoform p40-like [Hydra
magnipapillata]
Length = 361
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
T++V D+D +T+ +L F G++++ ++ D + + FI FT++ + RA +
Sbjct: 72 TIFVGDLDDDLTDSELRQAFEPFGEILNAKVVRDAATEKSKNYGFISFTNKPDAERAIRD 131
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR------TIYCTNIDKKVTQA 369
+ G ML P+ KT A N P D ++ T+Y TN+ +++
Sbjct: 132 MHGAMLKRRPI-----KTNWATRNQNSKPSQLDYDQVFKEVSESNCTVYVTNLPDRISDE 186
Query: 370 DVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCS---GVVL 419
+ FE CG++ + D + I F A +AI N S G +L
Sbjct: 187 VLVKHFED-CGKIVGTPRVFDGKNFAFIRFESHAAATTAIVKGNGSELNGAIL 238
>gi|195037090|ref|XP_001989998.1| GH19101 [Drosophila grimshawi]
gi|193894194|gb|EDV93060.1| GH19101 [Drosophila grimshawi]
Length = 476
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T+YV ++D V+EE L ALF G V C+I +P + +AFIE+++ + A +
Sbjct: 7 KTLYVGNLDGTVSEELLVALFGKMGPVKSCKIIREPGND-PYAFIEYSNYQAASTALTAM 65
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+ ++V A +P N P+T+ I+ ++ ++ ++ F
Sbjct: 66 NKRVFLDKEIKV---NWATSPGN---TPKTDISSH---HHIFVGDLSPEIETETLREAFA 116
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
GE+ R++ D S AFV FV AE+AI A+N G +GS IR + S
Sbjct: 117 PF-GEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRTNWSTR 173
Query: 432 PVRP 435
+ P
Sbjct: 174 KLPP 177
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD---PNSVLRFAFIEFTDEAEGARAAL 314
++YV D++ V E+QL ALF V +C D L + ++ F + RA
Sbjct: 61 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 120
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
NL T++ P+RV+ S +PT R+ ++ N++ + +
Sbjct: 121 NLNFTVVNGKPIRVMFSNR-----DPTL-------RKSGLANVFIKNLEPNIDNKSLYEM 168
Query: 375 FESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
F S G + ++ D++ ++ F++F SA A+N
Sbjct: 169 FSSF-GTILSSKVATDFNGKSKGYGFIQFESESSAKDAIN 207
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 10/177 (5%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL-NL 316
VYV ++ + ++ L F G + + D N + R F F+ F +++E AR A+ NL
Sbjct: 242 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNF-EKSECARNAVKNL 300
Query: 317 AGTMLG---FYPVRVLPSKTAIAPVNPTF-LPRTEDEREMCARTIYCTNIDKKVTQADVK 372
G +G Y R A + F + + ++ +Y N+D + ++
Sbjct: 301 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 360
Query: 373 LFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESA-IAALNCSGVVLGSLPIRVS 427
FE GEV +++ D H S FV F E A A L +G ++G P+ V+
Sbjct: 361 KLFECF-GEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVA 416
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGA 310
E++ +Y+ ++D + +E L LF G+V C++ D + + F+ F +
Sbjct: 338 EKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDAN 397
Query: 311 RAALNLAGTMLGFYPVRV 328
A L + G M+G P+ V
Sbjct: 398 NAILKMNGKMVGKKPLYV 415
>gi|225435468|ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 447
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 93/225 (41%), Gaps = 42/225 (18%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDP 292
SFG G+RR ++ +++V D+ VT+ L F V ++ DP
Sbjct: 120 SFGIGERRPDAGP---------EHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDP 170
Query: 293 NS--VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV---LPSKTA------------- 334
N+ + F++F+DE E RA + G P+R+ P KT
Sbjct: 171 NTGRTKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKAL 230
Query: 335 ---IAPVNPTF--LPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
A P LP D + TI+ N+D VT+ ++K F S GE+ +++
Sbjct: 231 YPAPAYTTPPLQALPADND---INNTTIFVGNLDPNVTEEELKQIF-SQFGELVYVKIPA 286
Query: 390 DYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 433
FV+F SA A+ G V+G L +R+S ++P
Sbjct: 287 ----GRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRISWGRSPT 327
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NS 294
Q ++ + S +Q E ++YV D++ V+E L +F G V R+C D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA 354
L +A++ F D G +A L + P++ + + +P+ R+ +
Sbjct: 78 SLGYAYVNFNDHEAGRKAI-----EQLNYTPIKGRLCRIMWSQRDPSL-------RKKGS 125
Query: 355 RTIYCTNIDKKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR----IAFVEFVMAESA 408
I+ N+ + D K ++ SV G++ ++ D + ++ + F E A+ A
Sbjct: 126 GNIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEA 182
Query: 409 IAALNCSGVVLGSLPIRVSP 428
I ALN G++L I V+P
Sbjct: 183 IDALN--GMLLNGQEIYVAP 200
>gi|115446801|ref|NP_001047180.1| Os02g0567900 [Oryza sativa Japonica Group]
gi|113536711|dbj|BAF09094.1| Os02g0567900, partial [Oryza sativa Japonica Group]
Length = 259
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 13/182 (7%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVV-DCRICGDPNSVLR--FAFIEFTDEAEGARAAL 314
+++V D+ VT+E L LF + V ++ D N+ + F+ F D+ + A
Sbjct: 31 SIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMT 90
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
+ G P+R+ P+ + + P + + + RTIY +D T+ +++
Sbjct: 91 EMNGAYCSTRPIRIGPATPRRSSGDSGSSPPRQSDSDSTNRTIYVGGLDPNATEDELRKA 150
Query: 375 FESVCGEVYRLRLLGDYHHSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
F G++ +++ + FV+FV AE A+ LN G +G +R+S ++
Sbjct: 151 FAKY-GDLASVKI----PVGKQCGFVQFVNRPDAEEALQGLN--GSTIGKQAVRLSWGRS 203
Query: 432 PV 433
P
Sbjct: 204 PA 205
>gi|449296279|gb|EMC92299.1| hypothetical protein BAUCODRAFT_38330 [Baudoinia compniacensis UAMH
10762]
Length = 634
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 22/187 (11%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEG 309
+E RRTV+V + ++ ++L A F G VV+ +I D S ++EF DE E
Sbjct: 242 DERDRRTVFVQQLAARLRTKELQAFFEAVGPVVEAQIVKDRVSGRSKGVGYVEFKDE-ES 300
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--------RTIYCTN 361
+ A+ L G L P+ IA + R E A +Y N
Sbjct: 301 VQKAIQLTGQKLLGIPI--------IAQLTEAEKNRQARHTEGTATQSNGIPFHRLYVGN 352
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
I +T+ D+K FE GE+ ++L + ++ FV+F+ A AL +G L
Sbjct: 353 IHFSITEDDLKNVFEPF-GELEFVQLQKEEQGRSKGYGFVQFIDPAQAKEALEKMNGFEL 411
Query: 420 GSLPIRV 426
PIRV
Sbjct: 412 AGRPIRV 418
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N + +K F S G+ ++++ D ++ FV F E A A+
Sbjct: 192 NVYIKNFGDDMDDERLKELF-SKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAV 248
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F+ A+ RA
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N + +K F+ G+ ++++ D +R F+ + E A A+
Sbjct: 192 NVYIKNFGDDMNDERLKELFDKY-GKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAV 248
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 236 GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ +++M + L ++ E++++ +Y+ ++D + +E+L F G +
Sbjct: 264 GRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 287 RICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTA---IAPVNPTFL 343
++ + F F+ F+ E +A + G ++G P+ V ++ A + ++
Sbjct: 324 KVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYM 383
Query: 344 PRTEDEREMCARTI 357
R R M A TI
Sbjct: 384 QRIAGMRAMPANTI 397
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD---PNSVLRFAFIEFTDEAEGARAAL 314
++YV D++ V E+QL ALF V +C D L + ++ F + RA
Sbjct: 85 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 144
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
NL T++ P+RV+ S +PT R+ ++ N++ + +
Sbjct: 145 NLNFTVVNGKPIRVMFSNR-----DPTL-------RKSGLANVFIKNLEPNIDNKSLYEM 192
Query: 375 FESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
F S G + ++ D++ ++ F++F SA A+N
Sbjct: 193 FSSF-GTILSSKVATDFNGKSKGYGFIQFESESSAKDAIN 231
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 10/177 (5%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL-NL 316
VYV ++ + ++ L F G + + D N + R F F+ F +++E AR A+ NL
Sbjct: 266 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNF-EKSECARNAVKNL 324
Query: 317 AGTMLG---FYPVRVLPSKTAIAPVNPTF-LPRTEDEREMCARTIYCTNIDKKVTQADVK 372
G +G Y R A + F + + ++ +Y N+D + ++
Sbjct: 325 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 384
Query: 373 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESA-IAALNCSGVVLGSLPIRVS 427
FE GEV +++ D H ++ FV F E A A L +G ++G P+ V+
Sbjct: 385 KLFECF-GEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVA 440
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGA 310
E++ +Y+ ++D + +E L LF G+V C++ D + + F+ F +
Sbjct: 362 EKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDAN 421
Query: 311 RAALNLAGTMLGFYPVRV 328
A L + G M+G P+ V
Sbjct: 422 NAILKMNGKMVGKKPLYV 439
>gi|126277431|ref|XP_001369327.1| PREDICTED: polyadenylate-binding protein 2-like [Monodelphis
domestica]
Length = 306
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ + R ++ L ++ ++V+P +T
Sbjct: 219 EFSDK-DSVRTSMALDDSLFRGRQIKVIPKRT 249
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
+S ++ + I+V P +T
Sbjct: 223 KDSVRTSMALDDSLFRGRQIKVIPKRT 249
>gi|47223170|emb|CAG11305.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 11/108 (10%)
Query: 325 PVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR 384
PVR+ KT I P++ T +ER+ ART++C + ++ D++ FF +V G+V
Sbjct: 125 PVRL--DKTFIQPIDNL----TPEERD--ARTVFCMQLAARIRARDLEDFFSAV-GKVRD 175
Query: 385 LRLLGDYH--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
+R++ D + S IA++EFV + S A+ +G L +PI V S+
Sbjct: 176 VRIISDRNSRRSKGIAYIEFVESSSVPLAIGLTGQRLLGVPIIVQASQ 223
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 11/181 (6%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEG 309
EE RTV+ + ++ L F G+V D RI D NS A+IEF E+
Sbjct: 142 EERDARTVFCMQLAARIRARDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYIEFV-ESSS 200
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART-IYCTNIDKKVTQ 368
A+ L G L P+ V S+ A N ++ +Y ++ +T+
Sbjct: 201 VPLAIGLTGQRLLGVPIIVQASQ---AEKNRAAAAANNLQKGSSGPMRLYVGSLHFNITE 257
Query: 369 ADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIR 425
++ FE G++ ++L+ D S F+ F AE A AL +G L P++
Sbjct: 258 EMLRGIFEPF-GKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMK 316
Query: 426 V 426
V
Sbjct: 317 V 317
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 25/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLF----GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 246
>gi|297746331|emb|CBI16387.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 93/225 (41%), Gaps = 42/225 (18%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDP 292
SFG G+RR ++ +++V D+ VT+ L F V ++ DP
Sbjct: 120 SFGIGERRPDAGP---------EHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDP 170
Query: 293 NS--VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV---LPSKTA------------- 334
N+ + F++F+DE E RA + G P+R+ P KT
Sbjct: 171 NTGRTKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKAL 230
Query: 335 ---IAPVNPTF--LPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
A P LP D + TI+ N+D VT+ ++K F S GE+ +++
Sbjct: 231 YPAPAYTTPPLQALPADND---INNTTIFVGNLDPNVTEEELKQIF-SQFGELVYVKIPA 286
Query: 390 DYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 433
FV+F SA A+ G V+G L +R+S ++P
Sbjct: 287 ----GRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRISWGRSPT 327
>gi|195391714|ref|XP_002054505.1| GJ22770 [Drosophila virilis]
gi|194152591|gb|EDW68025.1| GJ22770 [Drosophila virilis]
Length = 401
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
++V D+ ++ +QL F G++ DCR+ DP ++ + F+ F ++E A +
Sbjct: 69 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 128
Query: 317 AGTMLGF------YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT--- 367
G LG + R P+ A + P ++ T+YC I+ ++
Sbjct: 129 NGQWLGSRSIRTNWATRKPPATKADMNIKPLTFDEVYNQSSPTNCTVYCGGINGALSGFL 188
Query: 368 --QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
+ K F S G + +R+ D + AFV F E+A A+
Sbjct: 189 NEEILQKTF--SPYGTIQEIRVFKDKGY----AFVRFSTKEAATHAI 229
>gi|320593519|gb|EFX05928.1| RNA splicing factor [Grosmannia clavigera kw1407]
Length = 610
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 26/190 (13%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
+E RRTV+V + ++ +L F G V + +I D N ++EF E E
Sbjct: 204 DERDRRTVFVQQLAARLRTRELKDFFEKAGPVAEAQIVKDRVSNRSKGVGYVEFRSE-ES 262
Query: 310 ARAALNLAGTMLGFYPV-----------RVLPSKTAIAPVNPTFLPRTEDEREMCARTIY 358
AAL L G L PV +V + A + N T +P +Y
Sbjct: 263 VTAALQLTGQKLLGIPVIVQMTEAEKNRQVRSTAEATSNGNSTGVP---------FHRLY 313
Query: 359 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSG 416
NI +T++D++ FE GE+ ++L D +R FV+F ++ A AL +G
Sbjct: 314 VGNIHFSITESDLRNVFEPF-GELEFVQLQKDDTGRSRGYGFVQFRDSDQAREALEKMNG 372
Query: 417 VVLGSLPIRV 426
L PIRV
Sbjct: 373 FDLAGRPIRV 382
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVE 401
P TEDER+ RT++ + ++ ++K FFE G V +++ D + S + +VE
Sbjct: 200 PLTEDERDR--RTVFVQQLAARLRTRELKDFFEK-AGPVAEAQIVKDRVSNRSKGVGYVE 256
Query: 402 FVMAESAIAALNCSGVVLGSLPIRV 426
F ES AAL +G L +P+ V
Sbjct: 257 FRSEESVTAALQLTGQKLLGIPVIV 281
>gi|281209044|gb|EFA83219.1| polyadenylate-binding protein 2 [Polysphondylium pallidum PN500]
Length = 202
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 348 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMA 405
D+ E+ AR++Y N++ TQ D+ +F+S CG V R+ +L D H +VEFV
Sbjct: 77 DQEEIDARSVYVGNVEYTSTQEDILAYFQS-CGTVNRITILNDKTTGHPKGCCYVEFVDR 135
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKT 431
ES AL + + I+V+ +T
Sbjct: 136 ESVQNALVLNDTTFNNRQIKVTAKRT 161
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 230 RRKKSFGQGKRRMN------SRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV 283
RR K + +++N +EEI R+VYV +++ T+E + A F CG V
Sbjct: 51 RRYKEMEEETKKLNELQNSVDSNGFGDQEEIDARSVYVGNVEYTSTQEDILAYFQSCGTV 110
Query: 284 -----VDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
++ + G P ++EF D E + AL L T ++V +T +
Sbjct: 111 NRITILNDKTTGHPKGC---CYVEFVD-RESVQNALVLNDTTFNNRQIKVTAKRTNL 163
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N + +K F S G+ ++++ D ++ FV F E A A+
Sbjct: 192 NVYIKNFGDDMDDERLKELF-SKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAV 248
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|402585898|gb|EJW79837.1| Poly(A) binding protein [Wuchereria bancrofti]
Length = 175
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 16/158 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D + L +A++ F A+ RA
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R A I+ N+DK + + F
Sbjct: 79 MNFDMMYGKPIRIMWSQ------------RDPSMRRSGAGNIFIKNLDKSIDNKAIYDTF 126
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
S+ G + ++ D +++ FV F ESA A+
Sbjct: 127 -SMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAI 163
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKCRREREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F S G+ ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKETF-SKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVD 249
>gi|340057933|emb|CCC52286.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 371
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 260 YVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGT 319
Y+ +ID+ VT E L +F CG +VDC + G R+ FI+F E + AR A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGTIVDCSLNGRDEDPYRYGFIDFATEDDRAR-AMKYNGF 70
Query: 320 MLGFYPVRVLPSKTAIA 336
L ++V SK +
Sbjct: 71 TLAGRKIKVGISKGNVG 87
>gi|296815788|ref|XP_002848231.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Arthroderma otae CBS 113480]
gi|238841256|gb|EEQ30918.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Arthroderma otae CBS 113480]
Length = 507
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 22/182 (12%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---SVLRFAFIEFTDEAEG 309
E +R +YV +D +VTE+ L +F G V +I D N L + FIE+ D
Sbjct: 98 EPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFQSKGLNYGFIEYDDPGAA 157
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR-TIYCTNIDKKVTQ 368
RA L G + +R VN + T + + I+ ++ +V
Sbjct: 158 ERAMQTLNGRRVHQSEIR----------VNWAYQSNTASKEDTSNHFHIFVGDLSNEVND 207
Query: 369 ADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEF---VMAESAIAALNCSGVVLGSLP 423
+V L S CG V R++ D S FV F AE A+++++ G LGS
Sbjct: 208 -EVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRDRADAEKALSSMD--GEWLGSRA 264
Query: 424 IR 425
IR
Sbjct: 265 IR 266
>gi|307206655|gb|EFN84627.1| Nucleolysin TIAR [Harpegnathos saltator]
Length = 274
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 32/165 (19%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
EE RT+YV ++D V+E+ L ALF G V C+I +P + +AF+EFT+ A
Sbjct: 3 EESNPRTLYVGNLDTTVSEDLLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAA- 60
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNP-TFLP---RTEDEREMCARTIYCTNIDKKVT 367
TA+A +N +FL + ++ T+YC +T
Sbjct: 61 ---------------------TALAAMNKRSFLDKEMKVYNQSSPTNCTVYCGGFTNGIT 99
Query: 368 QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
+K F S G + +R+ + + AF++F E+A A+
Sbjct: 100 DELIKKTF-SPFGTIQDIRVFKEKGY----AFIKFTTKEAATHAI 139
>gi|400598297|gb|EJP66014.1| CC1-like family splicing factor [Beauveria bassiana ARSEF 2860]
Length = 556
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 80/191 (41%), Gaps = 30/191 (15%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCG-----QVVDCRICGDPNSVLRFAFIEFTDE 306
+E RRTV+V + ++ +L F G Q+V RI G V ++EF DE
Sbjct: 165 DERDRRTVFVQQLAARLRTRELKEFFEKVGPVTEAQIVKDRISGRSKGV---GYVEFKDE 221
Query: 307 AEGARAALNLAGTMLGFYPVRVLPSK---------TAIAPVNPTFLPRTEDEREMCARTI 357
+ AL L G L PV V ++ T +P +P +
Sbjct: 222 -DSVATALQLTGQKLLGIPVIVQVTEAEKNRQARNTEAGGPHPNHVP---------FHRL 271
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CS 415
Y NI VT+ D++ FE GE+ ++L D +R FV+F A A AL +
Sbjct: 272 YVGNIHFNVTEEDLRAVFEPF-GELEFVQLQKDESDRSRGYGFVQFRDATQAREALEKMN 330
Query: 416 GVVLGSLPIRV 426
G L PIRV
Sbjct: 331 GFDLAGRPIRV 341
>gi|356512681|ref|XP_003525045.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 215
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 233 KSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP 292
K G + NS S A +EE R+V+V ++D T E++ F CG V I D
Sbjct: 63 KEIGSVQDPANSAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK 122
Query: 293 NSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
+ FA++EF EAE + AL L + L ++VLP +T + P + PR
Sbjct: 123 FGQPKGFAYVEFV-EAEAVQEALLLNESELHGRQLKVLPKRTNV-PGMKQYRPR 174
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAI 409
E +R+++ N+D T +V+ F+S CG V R+ +L D + A+VEFV AE+
Sbjct: 83 EADSRSVFVGNVDYACTPEEVQQHFQS-CGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQ 141
Query: 410 AALNCSGVVLGSLPIRVSPSKTPV------RPR 436
AL + L ++V P +T V RPR
Sbjct: 142 EALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 174
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAAL 314
RT++V ++D +T+E LA LF G V +I D L FAF+EF+D + ++A
Sbjct: 38 RTLFVGNLDPAITDEFLATLFNQIGAVTKAKIIFDCFQGLNDPFAFVEFSDHNQASQALQ 97
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
++ G L +RV A+ P P + E R ++ ++ ++ ++
Sbjct: 98 SMNGRQLLEREMRV---NWAVEPNQPGDRNKPETSRHF---HVFVGDLSAEIDSTKLREA 151
Query: 375 FESVCGEVYRLRLLGD--YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVS 427
F GEV +++ D + + FV + E A A+ +G LG IR +
Sbjct: 152 FLPF-GEVSEAKIIRDNATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTN 206
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL-NL 316
+Y+ ++++ + + + F G +++C + D + R + F+ F D E ARAA+ +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHF-DSEEAARAAIEKV 173
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVKLF 374
G + V V+ F+PR + E+E + +Y N+ ++ T+ ++
Sbjct: 174 NGMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREM 222
Query: 375 FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA-LNCSGVVLG 420
FE +L + S R FV + +SA+AA + G LG
Sbjct: 223 FEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLG 269
>gi|189239479|ref|XP_975440.2| PREDICTED: similar to polyadenylate binding protein 2 [Tribolium
castaneum]
Length = 222
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC-----GDPNSVLRFAFI 301
SL ++ E+ R++YV ++D T E+L F GCG + I G P FA+I
Sbjct: 88 SLEEKMEVDNRSIYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKG---FAYI 144
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF D + + A+ + ++ P++V+P +T
Sbjct: 145 EFGDR-DSVQTAMAMDESLFRGRPIKVMPKRT 175
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E+ R+IY N+D T +++ F CG + R+ +L + + H A++EF
Sbjct: 90 EEKMEVDNRSIYVGNVDYGATAEELEQHFHG-CGSINRVTILCNKYDGHPKGFAYIEFGD 148
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
+S A+ + PI+V P +T
Sbjct: 149 RDSVQTAMAMDESLFRGRPIKVMPKRT 175
>gi|406861752|gb|EKD14805.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 495
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 20/180 (11%)
Query: 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSV-LRFAFIEFTDEAEGAR 311
E +R +YV +D +VTE+ L +F G V + +I D NS + F+E+ D A R
Sbjct: 85 EPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNSKGFNYGFVEYDDPAAAER 144
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR-TIYCTNIDKKVTQAD 370
A L G + +R VN + T ++ + I+ ++ +V +
Sbjct: 145 AMQTLNGRRVHQAEIR----------VNWAYQSNTSNKEDTSNHFHIFVGDLSNEVND-E 193
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTR-----IAFVEFVMAESAIAALNCSGVVLGSLPIR 425
V L S G V R++ D +AF E AE A+++++ G LGS IR
Sbjct: 194 VLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKALSSMD--GEWLGSRAIR 251
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 163
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N + +K F G+ ++++ D ++ FV F E A A+
Sbjct: 192 NVYIKNFGDDMDDERLKELF-GKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAV 248
>gi|161078704|ref|NP_001097953.1| CG34354, isoform A [Drosophila melanogaster]
gi|158030423|gb|ABW08789.1| CG34354, isoform A [Drosophila melanogaster]
Length = 525
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
++V D+ ++ +QL F G++ DCR+ DP ++ + F+ F ++E A +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 317 AGTMLGF------YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT--- 367
G LG + R P+ A P ++ T+YC I+ ++
Sbjct: 158 NGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFL 217
Query: 368 --QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
+ K F S G + +R+ D + AFV F E+A A+
Sbjct: 218 NEEILQKTF--SPYGTIQEIRVFKDKGY----AFVRFSTKEAATHAI 258
>gi|326505260|dbj|BAK03017.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 346 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVM 404
E + ++ AR++Y N+D T +V+ F++ CG V R+ +L D + A+VEF+
Sbjct: 75 AEAKEQVDARSVYVGNVDYACTPEEVQQHFQA-CGTVNRVTILTDKFGQPKGFAYVEFLE 133
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPV---RPRAPR 439
E+ ALN + L I+VSP +T V + R PR
Sbjct: 134 QEAVQEALNLNESELHGRQIKVSPKRTNVPGMKQRPPR 171
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 243 NSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFI 301
N+ T+ A +E++ R+VYV ++D T E++ F CG V I D + FA++
Sbjct: 71 NASTAEA-KEQVDARSVYVGNVDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYV 129
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
EF E E + ALNL + L ++V P +T +
Sbjct: 130 EFL-EQEAVQEALNLNESELHGRQIKVSPKRTNV 162
>gi|147835778|emb|CAN72942.1| hypothetical protein VITISV_011270 [Vitis vinifera]
Length = 185
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-- 294
QG + + A + + ++YV D++ V + QL LF G VV R+C D ++
Sbjct: 10 QGPGPAPNSAAGAGGNQFVTTSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRR 69
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA 354
L + ++ +++ + ARA +L F P+ P + + +P+ R+
Sbjct: 70 SLGYGYVNYSNPQDAARAL-----DVLNFTPLNGKPLRIMYSHCDPSI-------RKSGT 117
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI 397
I+ N+DK + + F S G + + L Y ++ R+
Sbjct: 118 GNIFIKNLDKGIDHKALHDTF-SAFGNILSCKDLDTYQNNMRL 159
>gi|325303220|tpg|DAA34696.1| TPA_inf: apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Amblyomma variegatum]
Length = 374
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 23/223 (10%)
Query: 207 ANNSLIFNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEI---IRRTVYVSD 263
N+ F + +A A+ ++ FG+ + ++N TS ++ ++V D
Sbjct: 14 GNDPYCFVEFSDHQSAASALLAMNKRLCFGK-EMKVNWATSPGNTPKLDTSKHHHIFVGD 72
Query: 264 IDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNLAGTML 321
+ ++ QL F G + DCR+ DP ++ + F+ F +A+ A + G L
Sbjct: 73 LSPEIETTQLRDAFAPFGDISDCRVVRDPQTLKSKGYGFVSFVKKADAENAIGTMNGQWL 132
Query: 322 GF------YPVRVLPSKTAIAPVNPT--FLPRTEDE----REMCARTIYCTNIDKKVTQA 369
G + R P+ A V+ T P T DE T+YC I + +++
Sbjct: 133 GSRAIRTNWATRKPPANRTQAEVDITTSTKPLTFDEVYNQSSPTNCTVYCGGITQGLSEE 192
Query: 370 DVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
++ F S G + +R+ D + AF++ E+A A+
Sbjct: 193 LMQKTFSSY-GAIQEIRVFKDKGY----AFIKVGTKEAATHAI 230
>gi|198476543|ref|XP_001357388.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
gi|198137744|gb|EAL34457.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 14/183 (7%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRI--CGDPNSVLRFAFIEFTDEAEG 309
EE RTV+ + Q+V L F G+V D R+ C A+IEF D E
Sbjct: 262 EERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFED-PES 320
Query: 310 ARAALNLAGTMLGFYPVRVLPS---KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV 366
AL L+G L P+ V + K + P F P++ + +Y ++ +
Sbjct: 321 VALALGLSGQRLLGVPIMVQHTQAEKNRLQNATPAFQPKS----HVGPMRLYVGSLHFDI 376
Query: 367 TQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLP 423
T+ ++ FE G++ ++L+ D + S F+ + AE A AL +G L P
Sbjct: 377 TEEMLRGIFEPF-GKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALEQLNGFELAGRP 435
Query: 424 IRV 426
++V
Sbjct: 436 MKV 438
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAAL-NL 316
+Y+ ++++ + + + F G +++C + D + R + F+ F D E ARAA+ +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHF-DSEEAARAAIEKV 173
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA--RTIYCTNIDKKVTQADVKLF 374
G + V V+ F+PR + E+E + +Y N+ ++ T+ ++
Sbjct: 174 NGMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREM 222
Query: 375 FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA-LNCSGVVLG 420
FE +L + S R FV + +SA+AA + G LG
Sbjct: 223 FEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLG 269
>gi|15221071|ref|NP_172630.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75336898|sp|Q9SAB3.1|RB45B_ARATH RecName: Full=Polyadenylate-binding protein RBP45B;
Short=Poly(A)-binding protein RBP45B; AltName:
Full=RNA-binding protein 45B; Short=AtRBP45B
gi|4835793|gb|AAD30259.1|AC007296_20 Similar to gb|U90212 DNA binding protein ACBF from Nicotiana
tabacum and contains 3 PF|00076 RNA recognition motif
domains. ESTs gb|T44278, gb|R65195, gb|N65904,
gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166,
gb|N96891, gb|W43137, gb|F15504, gb|F15495 and gb|Z30868
come from this gene [Arabidopsis thaliana]
gi|20260604|gb|AAM13200.1| similar to gb|U90212 DNA binding protein ACBF from Nicotiana
tabacum and contains 3 PF|00076 RNA recognition motif
domains [Arabidopsis thaliana]
gi|30725662|gb|AAP37853.1| At1g11650 [Arabidopsis thaliana]
gi|332190643|gb|AEE28764.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 405
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 241 RMN--SRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDP 292
R+N S +S +R++ T++V D+ VT+ L F V +VV R+ G
Sbjct: 137 RLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTG-- 194
Query: 293 NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP--SKTAIAPVNPTF---LPRTE 347
+ F+ F+DE+E RA + G P+R+ P SK + ++
Sbjct: 195 -RTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVT 253
Query: 348 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VM 404
+ + T++ +D VT +K F S GE+ +++ R FV+F
Sbjct: 254 TDNDPNNTTVFVGGLDASVTDDHLKNVF-SQYGEIVHVKIPA----GKRCGFVQFSEKSC 308
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTP 432
AE A+ LN GV LG +R+S ++P
Sbjct: 309 AEEALRMLN--GVQLGGTTVRLSWGRSP 334
>gi|291245050|ref|XP_002742404.1| PREDICTED: MGC81970 protein-like isoform 1 [Saccoglossus
kowalevskii]
Length = 556
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESA 408
E ART++C + +K+ D++ FF SV G V +RL+ D + S IA+VEF S
Sbjct: 155 ERDARTVFCWQLSQKIRPRDMEEFFSSV-GIVRDVRLISDRNSRRSKGIAYVEFQDKNSV 213
Query: 409 IAALNCSGVVLGSLPIRVSPSKT 431
AL SG L S+PI V S+
Sbjct: 214 PLALGLSGQKLLSIPIMVQASQA 236
>gi|449497695|ref|XP_004160482.1| PREDICTED: RNA-binding protein 39-like [Cucumis sativus]
Length = 598
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 9/196 (4%)
Query: 240 RRMNSRTSLAQRE---EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVL 296
RRM + + E E +RTV+ + + TE + F G+V D R+ D NS
Sbjct: 211 RRMKEKKGTTEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 270
Query: 297 R--FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNP-TFLPRTEDEREMC 353
++EF D A A+ L+G +L PV V PS+ V T
Sbjct: 271 SKGVGYVEFYD-AMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTGASGAGPYGAV 329
Query: 354 ARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
R +Y N+ +T+ ++ FE+ E+ +L L + H FV+F E A AA
Sbjct: 330 DRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQ 389
Query: 413 NCSGVV-LGSLPIRVS 427
+ +G + + I+VS
Sbjct: 390 SLNGKLEIAGRTIKVS 405
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 341 TFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIA 398
T P + ER+ RT++ + K T+ DV FF S G+V +RL+ D + S +
Sbjct: 219 TTEPEADPERDQ--RTVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVG 275
Query: 399 FVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
+VEF A S A+ SG +L P+ V PS+
Sbjct: 276 YVEFYDAMSVPMAIALSGQLLLGQPVMVKPSE 307
>gi|407407545|gb|EKF31308.1| RNA-binding protein, putative [Trypanosoma cruzi marinkellei]
Length = 425
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN 315
R Y+ +ID+ VT E L +F CG ++DC + G R+ FI+F E + AR A+
Sbjct: 8 RYGCYIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFASEDDRAR-AMK 66
Query: 316 LAGTMLGFYPVRVLPSKTAIA 336
G L ++V SK +
Sbjct: 67 YNGFTLAGRKIKVGVSKGNVG 87
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPLRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLL 163
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETHEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAREFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLL-GDYHHSTRIAFVEFVMAESAIAALN 413
+Y N + + +K F + G +R++ D S FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDEKLKELFGNY-GPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVD 249
>gi|395503056|ref|XP_003755889.1| PREDICTED: polyadenylate-binding protein 2 [Sarcophilus harrisii]
Length = 333
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 189 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 245
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ + R ++ L ++ ++V+P +T
Sbjct: 246 EFSDK-DSVRTSMALDDSLFRGRQIKVIPKRT 276
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 191 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 249
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
+S ++ + I+V P +T
Sbjct: 250 KDSVRTSMALDDSLFRGRQIKVIPKRT 276
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPLRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLL 163
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETHEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAREFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F S G +R++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDEKLKELF-SKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|297844004|ref|XP_002889883.1| ATRBP45B [Arabidopsis lyrata subsp. lyrata]
gi|297335725|gb|EFH66142.1| ATRBP45B [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 32/211 (15%)
Query: 241 RMN--SRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDP 292
R+N S +S +R++ T++V D+ VT+ L F V +VV R G
Sbjct: 139 RLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRATG-- 196
Query: 293 NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP--SKTAIAPVNPTF------LP 344
+ F+ F+DE+E RA + G P+R+ P SK + ++ +P
Sbjct: 197 -RTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSAAGGVP 255
Query: 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF-- 402
D T++ +D+ VT +K F GE+ +++ R FV+F
Sbjct: 256 TDNDPNNT---TVFVGGLDQSVTDDHLKNVFGQY-GEIVHVKIPA----GKRCGFVQFSE 307
Query: 403 -VMAESAIAALNCSGVVLGSLPIRVSPSKTP 432
AE A+ LN GV LG +R+S ++P
Sbjct: 308 KSCAEEALRMLN--GVQLGGTTVRLSWGRSP 336
>gi|71660275|ref|XP_821855.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70887244|gb|EAO00004.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 422
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 260 YVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGT 319
Y+ +ID+ VT E L +F CG ++DC + G R+ FI+F E + AR A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFASEDDRAR-AMKYNGF 70
Query: 320 MLGFYPVRVLPSKTAIA 336
L ++V SK +
Sbjct: 71 TLAGRKIKVGVSKGNVG 87
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 19/159 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
+ S G + +++ D + S AFV F E+A A+
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAI 155
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 22/174 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESA 408
+Y N ++V +K F S G+ ++++ D ++ FV + E A
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
>gi|255637596|gb|ACU19123.1| unknown [Glycine max]
Length = 205
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 233 KSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP 292
K G + NS S A +EE R+V+V ++D T E++ F CG V I D
Sbjct: 63 KEIGSVQDPANSAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK 122
Query: 293 NSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345
+ FA++EF EAE + AL L + L ++VLP +T + P + PR
Sbjct: 123 FGQPKGFAYVEFV-EAEAVQEALLLNESELHGRQLKVLPKRTNV-PGMKQYRPR 174
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAI 409
E +R+++ N+D T +V+ F+S CG V R+ +L D + A+VEFV AE+
Sbjct: 83 EADSRSVFVGNVDYACTPEEVQQHFQS-CGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQ 141
Query: 410 AALNCSGVVLGSLPIRVSPSKTPV------RPR 436
AL + L ++V P +T V RPR
Sbjct: 142 EALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 174
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPLRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLL 163
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETHEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAREFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F S G +R++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDEKLKELF-SKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVD 249
>gi|386766659|ref|NP_001163756.2| CG34354, isoform E [Drosophila melanogaster]
gi|386766661|ref|NP_001163755.2| CG34354, isoform D [Drosophila melanogaster]
gi|383292995|gb|ACZ95050.2| CG34354, isoform E [Drosophila melanogaster]
gi|383292996|gb|ACZ95049.2| CG34354, isoform D [Drosophila melanogaster]
Length = 431
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNL 316
++V D+ ++ +QL F G++ DCR+ DP ++ + F+ F ++E A +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 317 AGTMLGF------YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT--- 367
G LG + R P+ A P ++ T+YC I+ ++
Sbjct: 158 NGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFL 217
Query: 368 --QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
+ K F S G + +R+ D + AFV F E+A A+
Sbjct: 218 NEEILQKTF--SPYGTIQEIRVFKDKGY----AFVRFSTKEAATHAI 258
>gi|345567796|gb|EGX50724.1| hypothetical protein AOL_s00075g150 [Arthrobotrys oligospora ATCC
24927]
Length = 1471
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 24/183 (13%)
Query: 239 KRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLR 297
K+R+N R Q TVYV++ E + LF CG +++ R N+ R
Sbjct: 1069 KKRLNGREITVQLG--FNTTVYVTNFPPTADENWIRELFKECGPILEVRFPSLKYNNHRR 1126
Query: 298 FAFIEFTDEAEGARAALNLAGTML-GFYPVRVLPSKTAIAPVNPTFLPRTEDEREMC--- 353
F +++F D +E A A + G + GF V L P + ER
Sbjct: 1127 FCYVQF-DASEDAEKATEMNGKDVEGFKLVSKLSD------------PNVKQERSGAVYE 1173
Query: 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL--GDYHHSTRIAFVEFVMAESAIAA 411
R ++ NID T+ D++ F S G V +RL+ G HS F++F ESA A+
Sbjct: 1174 GREVFVRNIDYAATEDDIRELF-SKYGTVKSIRLISKGRGVHSG-YGFLDFETTESANAS 1231
Query: 412 LNC 414
L
Sbjct: 1232 LEL 1234
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +TE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 73 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 117
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F ++A A+ +G++L
Sbjct: 118 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLL 164
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 84 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 143
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E EM A+
Sbjct: 144 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAEMGAKAKEFT 192
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N + +K F+ G+ ++++ D +R FV + E A A+
Sbjct: 193 NVYIKNFGDDMDDQRLKELFDKY-GKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAV 249
>gi|449448446|ref|XP_004141977.1| PREDICTED: RNA-binding protein 39-like [Cucumis sativus]
Length = 598
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 9/196 (4%)
Query: 240 RRMNSRTSLAQRE---EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVL 296
RRM + + E E +RTV+ + + TE + F G+V D R+ D NS
Sbjct: 211 RRMKEKKDTTEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 270
Query: 297 R--FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNP-TFLPRTEDEREMC 353
++EF D A A+ L+G +L PV V PS+ V T
Sbjct: 271 SKGVGYVEFYD-AMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTGASGAGPYGAV 329
Query: 354 ARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412
R +Y N+ +T+ ++ FE+ E+ +L L + H FV+F E A AA
Sbjct: 330 DRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQ 389
Query: 413 NCSGVV-LGSLPIRVS 427
+ +G + + I+VS
Sbjct: 390 SLNGKLEIAGRTIKVS 405
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 341 TFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIA 398
T P + ER+ RT++ + K T+ DV FF S G+V +RL+ D + S +
Sbjct: 219 TTEPEADPERDQ--RTVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVG 275
Query: 399 FVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
+VEF A S A+ SG +L P+ V PS+
Sbjct: 276 YVEFYDAMSVPMAIALSGQLLLGQPVMVKPSE 307
>gi|190345448|gb|EDK37333.2| hypothetical protein PGUG_01431 [Meyerozyma guilliermondii ATCC
6260]
Length = 886
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 15/213 (7%)
Query: 234 SFGQGKRRMNSR-TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-D 291
+ + K+ +N + +++Q E I ++VS+ ++ ++ ALF CGQ+V R
Sbjct: 572 ALTKDKKAINGQHIAVSQLREAI---IWVSNFPPSFSQSEVKALFEDCGQIVSARFPSLK 628
Query: 292 PNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDERE 351
RF ++EFT A A GT L + K +A P + E ++
Sbjct: 629 SGRERRFCYLEFTKPESAAAAVKKHNGTKLS-DKISGDSFKLVVAISRPP--KKIETRKQ 685
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL------LGDYHHSTRIAFVEFVMA 405
+ R + N+D T+++++ FE GE+ + L H + AFV F
Sbjct: 686 VMHRQVCVKNLDYYTTESELRTVFEK-HGELEEISLPIKKDMRNKGHVNGGYAFVTFKTE 744
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAP 438
SA+ ALN G ++ + + V ++ V P
Sbjct: 745 PSALNALNADGELIRNRKVHVYKAQPQVSIYNP 777
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 23/197 (11%)
Query: 248 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV--------VDCRICGDPNSVLRFA 299
+ R++++ R V V ++D TE +L +F G++ D R G N +A
Sbjct: 680 IETRKQVMHRQVCVKNLDYYTTESELRTVFEKHGELEEISLPIKKDMRNKGHVNG--GYA 737
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYC 359
F+ F E A ALN G ++ V V ++ ++ NP+ +D+R TI
Sbjct: 738 FVTFKTEP-SALNALNADGELIRNRKVHVYKAQPQVSIYNPS---DYDDQR-----TITI 788
Query: 360 TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVL 419
T V Q ++ F G V + L H T A +EF +E+ +AL +
Sbjct: 789 TGFPDSVRQEQLEAFMAEHFGTVSKSFL----DHETGSAVIEFSDSETTKSALQIESTIF 844
Query: 420 GSLPIRVSPSKTPVRPR 436
+RV P + P+
Sbjct: 845 DGNTLRVGPKSSFRNPQ 861
>gi|297806757|ref|XP_002871262.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297317099|gb|EFH47521.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 897
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 20/199 (10%)
Query: 234 SFGQ--GKRRMN-SRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG 290
S GQ GKR N S + EI+ R ++V ++D + + +L LF G + D G
Sbjct: 182 SVGQRDGKRGSNVSIVGEYPQGEILSRILFVRNVDSIIEDCELRVLFKQYGDIRDLHTAG 241
Query: 291 DPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER 350
+ F + + D AA L G +L R L + +I NP E+
Sbjct: 242 ---KIRGFIMVSYYDIRSAQNAARALHGRLLR---GRKLDIRYSIPKENPK-----ENSS 290
Query: 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
E ++ N+D ++ ++ F S CGE+ +R + I F + AE A+
Sbjct: 291 EGA---LWVNNLDSSISNEELHRIFSS-CGEIREVRRTMHENSQVYIEFFDVRKAEVALQ 346
Query: 411 ALNCSGVVLGSLPIRVSPS 429
LN G+ + ++++P+
Sbjct: 347 GLN--GLEVAGRQLKLAPT 363
>gi|322785180|gb|EFZ11893.1| hypothetical protein SINV_08068 [Solenopsis invicta]
Length = 545
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 10/211 (4%)
Query: 229 VRRKKSFGQGKRRMNSRTSLAQREEIIRRT--VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
V K++ +++M S+ + QR++ + VYV I ++ E+ + F+ G +
Sbjct: 43 VLMKQTLAHQQQQMASQRNQVQRQQALALMCRVYVGSISFELKEDTIRQAFLPFGPIKSI 102
Query: 287 RICGDPNSVLR--FAFIEFTDEAEGARAAL-NLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ DP + FAF+E+ + E A+ AL + G M+G ++V+ + + P + +
Sbjct: 103 NMSWDPVTQKHKGFAFVEY-EIPEAAQLALEQMNGVMIGGRNIKVV-GRPSNMPQAQSVI 160
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDYHHSTRIAFVEF 402
+E + R IY +I + +T+ D+K FE+ Y +L H F+E+
Sbjct: 161 DEITEESKHYNR-IYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEY 219
Query: 403 VMAESAIAALNCSGVV-LGSLPIRVSPSKTP 432
++A+ A+ + LG +RV + TP
Sbjct: 220 ETMQAALEAIASMNLFDLGGQYLRVGRAITP 250
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEVIKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A+ +G++L
Sbjct: 117 DTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMNGMLL 163
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 108/290 (37%), Gaps = 59/290 (20%)
Query: 165 DMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNV- 223
D + LQ+LFS+ M S+ +++ GF F N F H V
Sbjct: 203 DEQGLQDLFSRFGKML------SVKVMRDDSGHSRGFG---FVN----FQKHEEAQKAVM 249
Query: 224 --NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQ 272
N R G+ ++R+ ++ L +R E +++ +YV ++D + +E+
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 273 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332
L F G + ++ + F F+ F+ E +A + G +LG P+ V
Sbjct: 310 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVA--- 366
Query: 333 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH 392
L + ++ER+ Y + ++ G LLG +H
Sbjct: 367 ----------LAQRKEERKAILTNQYMQRLST----------VRALGGP-----LLGSFH 401
Query: 393 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP-----VRPRA 437
T F+ V A AA SG+ + P +P P VRP A
Sbjct: 402 QPTSY-FLPSVPQPPAQAAYYASGLPMQPTPRWTAPPPRPSSASVVRPPA 450
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F +A + G +L V V F R E E E+ AR + T
Sbjct: 143 VHFETHEAAQQAITTMNGMLLNDRKVFV-----------GHFKSRREREVELGARAMEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLL-GDYHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLHVDVDEQGLQDLF--SRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAV 248
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ +VTE+ L F G V+ RIC D L +A++ F A+ +A
Sbjct: 11 SLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALDT 70
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ +R++ S+ R R+ ++ N+ K + D K +
Sbjct: 71 MNFDMIKGKSIRLMWSQ------------RDAYLRKSGIGNVFIKNLHKSI---DNKTLY 115
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALNCSGVVLGSLPIRVSPSK 430
E S G++ +++ D S AFV F A+ AI A+N G +L + V P K
Sbjct: 116 EHFSAFGKILSSKVMSDDAGSRGYAFVHFQSQTAADRAIEAMN--GALLKGCRLFVGPFK 173
>gi|46806694|dbj|BAD17764.1| putative nucleic acid binding protein [Oryza sativa Japonica Group]
Length = 396
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 13/182 (7%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVV-DCRICGDPNSVLR--FAFIEFTDEAEGARAAL 314
+++V D+ VT+E L LF + V ++ D N+ + F+ F D+ + A
Sbjct: 168 SIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMT 227
Query: 315 NLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 374
+ G P+R+ P+ + + P + + + RTIY +D T+ +++
Sbjct: 228 EMNGAYCSTRPIRIGPATPRRSSGDSGSSPPRQSDSDSTNRTIYVGGLDPNATEDELRKA 287
Query: 375 FESVCGEVYRLRLLGDYHHSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
F G++ +++ + FV+FV AE A+ LN G +G +R+S ++
Sbjct: 288 FAKY-GDLASVKI----PVGKQCGFVQFVNRPDAEEALQGLN--GSTIGKQAVRLSWGRS 340
Query: 432 PV 433
P
Sbjct: 341 PA 342
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV ++D VTE L +F G V R+C D + L +A++ + + A+G RA
Sbjct: 46 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 105
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
+L +++ R++ S+ R R+ I+ N+D+ + +
Sbjct: 106 LEHLNYSLIKGQSCRIMWSQ------------RDPALRKTGQGNIFIKNLDQSIDNKALH 153
Query: 373 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVL 419
F + G++ ++ D + +R AFV + E+A AA+ +G++L
Sbjct: 154 DTF-AAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLL 201
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 23/180 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T +++ ++DQ + + L F G ++ C++ D N R FA
Sbjct: 120 RIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFA 179
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ ++ E A AA+ ML L K + R E+ A+ +
Sbjct: 180 FVHYST-GEAADAAIKAVNGML-------LNDKKVYVGHHVGKKERLSKVEELRAQFTNV 231
Query: 358 YCTNIDKKVTQAD----VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413
Y N+D +VT A+ VK F ++ + R + S FV + ESA A++
Sbjct: 232 YIKNVDLEVTDAEFEDLVKPFGPTISVALSR----DEKGVSKGFGFVNYEHHESARKAVD 287
>gi|326432018|gb|EGD77588.1| hypothetical protein PTSG_08685 [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARA- 312
R + ++ + VTE L LF G + +I D + L + F+EF E ARA
Sbjct: 83 RNNLIINYLPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFVEFETAEEAARAI 142
Query: 313 -ALNLAGTMLGFYPVRVL-PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
A+N M V + PS ++I N +Y N+ + +T+
Sbjct: 143 QAMNGRQYMNKRLKVSIARPSSSSITGAN-----------------LYIKNLPRTITEDQ 185
Query: 371 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALNCSGVVLGSLPIRVS 427
++ F GE+ RLL D IAFV F AE A+A LN + S PI V
Sbjct: 186 LRAIFNPF-GEIISARLLYDGDVPKGIAFVRFDKRACAERAVAELNNTVPANCSQPIAVK 244
Query: 428 PSKTPVRPRAP 438
+ T R RAP
Sbjct: 245 FADTNRRSRAP 255
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 63/168 (37%), Gaps = 48/168 (28%)
Query: 238 GKRRMNSRTSLA----QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN 293
G++ MN R ++ I +Y+ ++ + +TE+QL A+F G+++ R+ D +
Sbjct: 147 GRQYMNKRLKVSIARPSSSSITGANLYIKNLPRTITEDQLRAIFNPFGEIISARLLYDGD 206
Query: 294 SVLRFAFIEFTDEAEGARAALNL----------------------------------AGT 319
AF+ F A RA L G+
Sbjct: 207 VPKGIAFVRFDKRACAERAVAELNNTVPANCSQPIAVKFADTNRRSRAPSGSSAGMHQGS 266
Query: 320 MLGFYPVRVLP---------SKTAIAPVNPTFLPRTEDEREMCARTIY 358
M+ YP +P + +AP+ P F+P + D ART Y
Sbjct: 267 MMA-YPSMPMPYGGGFQQPQPQPTMAPLQPGFVPMSPDMLPPSARTPY 313
>gi|303284403|ref|XP_003061492.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456822|gb|EEH54122.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 525
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAAL 314
+++T++V ++ VT EQL +F CG V DCRI + F F+E+ E A A L
Sbjct: 177 LQKTLHVGNLAPGVTVEQLRTIFAFCGVVTDCRIANEKA----FGFVEYATH-EQALAGL 231
Query: 315 NLAGTMLGFYPVRVLPSKT 333
L G L P+RV SKT
Sbjct: 232 GLNGLALEDRPLRVEMSKT 250
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
+T++ N+ VT ++ F + CG V R+ + FVE+ E A+A L
Sbjct: 179 KTLHVGNLAPGVTVEQLRTIF-AFCGVVTDCRIA----NEKAFGFVEYATHEQALAGLGL 233
Query: 415 SGVVLGSLPIRVSPSKT 431
+G+ L P+RV SKT
Sbjct: 234 NGLALEDRPLRVEMSKT 250
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV ++D VTE L +F G V R+C D + L +A++ + + A+G RA
Sbjct: 46 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 105
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
+L +++ R++ S+ R R+ I+ N+D+ + +
Sbjct: 106 LEHLNYSLIKGQSCRIMWSQ------------RDPALRKTGQGNIFIKNLDQSIDNKALH 153
Query: 373 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVL 419
F + G++ ++ D + +R AFV + E+A AA+ +G++L
Sbjct: 154 DTF-AAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLL 201
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T +++ ++DQ + + L F G ++ C++ D N R FA
Sbjct: 120 RIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFA 179
Query: 300 FIEFTDEAEGARAALNLAGTML 321
F+ ++ E A AA+ ML
Sbjct: 180 FVHYST-GEAADAAIKAVNGML 200
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 24/169 (14%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEVIKGQPVRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAES---AIAALNCSGVVL 419
+ S G + +++ D H S FV F E+ AIA +N G++L
Sbjct: 117 DTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAHQAIATMN--GMLL 163
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F +A + G +L V V F R E E E+ AR + T
Sbjct: 143 VHFETHEAAHQAIATMNGMLLNDRKVFV-----------GHFKSRREREAELGARAMEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLL-GDYHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLHVDVDEQGLQDLF--SQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAV 248
>gi|21592583|gb|AAM64532.1| putative DNA binding protein [Arabidopsis thaliana]
Length = 404
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 24/203 (11%)
Query: 244 SRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLR 297
S +S +R++ T++V D+ VT+ L F V +VV R+ G
Sbjct: 141 SLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVINRVTG---RTKG 197
Query: 298 FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP--SKTAIAPVNPTF---LPRTEDEREM 352
+ F+ F+DE+E RA + G P+R+ P SK + ++ + +
Sbjct: 198 YGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDP 257
Query: 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAI 409
T++ +D VT +K F S GE+ +++ R FV+F AE A+
Sbjct: 258 NNTTVFVGGLDASVTDDHLKNVF-SQYGEIVHVKIPA----GKRCGFVQFSEKSCAEEAL 312
Query: 410 AALNCSGVVLGSLPIRVSPSKTP 432
LN GV LG +R+S ++P
Sbjct: 313 RMLN--GVQLGGTTVRLSWGRSP 333
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 22/163 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEVIKGQPVRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAES---AIAALN 413
+ S G + +++ D H S FV F E+ AIA +N
Sbjct: 117 DTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAHQAIATMN 159
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F +A + G +L V V F R E E E+ AR + T
Sbjct: 143 VHFETHEAAHQAIATMNGMLLNDRKVFV-----------GHFKSRREREAELGARAMEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLL-GDYHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLHVDVDEQGLQDLF--SQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAV 248
>gi|357134255|ref|XP_003568733.1| PREDICTED: uncharacterized protein LOC100843156 [Brachypodium
distachyon]
Length = 786
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD 305
T + E +++ V +S++ +T E L LF CG+VVDC I + A++E++
Sbjct: 342 TGSVDKAEALKKMVQISNLSLLLTVEHLKQLFGYCGKVVDCTIT----ETKQTAYVEYS- 396
Query: 306 EAEGARAALNLAGTMLGFYPVRV-----LPSKTAIAPVN 339
+ E A AAL L +G P+ V LP KT +A N
Sbjct: 397 KPEEATAALALNNMDVGGRPLNVEMAKTLPPKTNLANSN 435
>gi|146419598|ref|XP_001485760.1| hypothetical protein PGUG_01431 [Meyerozyma guilliermondii ATCC
6260]
Length = 886
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 15/213 (7%)
Query: 234 SFGQGKRRMNSR-TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-D 291
+ + K+ +N + +++Q E I ++VS+ ++ ++ ALF CGQ+V R
Sbjct: 572 ALTKDKKAINGQHIAVSQLREAI---IWVSNFPPSFSQSEVKALFEDCGQIVSARFPSLK 628
Query: 292 PNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDERE 351
RF ++EFT A A GT L + K +A P + E ++
Sbjct: 629 SGRERRFCYLEFTKPESAAAAVKKHNGTKLS-DKISGDSFKLVVAISRPP--KKIETRKQ 685
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL------LGDYHHSTRIAFVEFVMA 405
+ R + N+D T+++++ FE GE+ + L H + AFV F
Sbjct: 686 VMHRQVCVKNLDYYTTESELRTVFEK-HGELEEISLPIKKDMRNKGHVNGGYAFVTFKTE 744
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAP 438
SA+ ALN G ++ + + V ++ V P
Sbjct: 745 PSALNALNADGELIRNRKVHVYKAQPQVSIYNP 777
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 23/197 (11%)
Query: 248 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV--------VDCRICGDPNSVLRFA 299
+ R++++ R V V ++D TE +L +F G++ D R G N +A
Sbjct: 680 IETRKQVMHRQVCVKNLDYYTTESELRTVFEKHGELEEISLPIKKDMRNKGHVNG--GYA 737
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYC 359
F+ F E A ALN G ++ V V ++ ++ NP+ +D+R TI
Sbjct: 738 FVTFKTEP-SALNALNADGELIRNRKVHVYKAQPQVSIYNPS---DYDDQR-----TITI 788
Query: 360 TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVL 419
T V Q ++ F G V + L H T A +EF +E+ +AL +
Sbjct: 789 TGFPDSVRQEQLEAFMAEHFGTVSKSFL----DHETGSAVIEFSDSETTKSALQIESTIF 844
Query: 420 GSLPIRVSPSKTPVRPR 436
+RV P + P+
Sbjct: 845 DGNTLRVGPKSSFRNPQ 861
>gi|301119623|ref|XP_002907539.1| nucleolin, putative [Phytophthora infestans T30-4]
gi|262106051|gb|EEY64103.1| nucleolin, putative [Phytophthora infestans T30-4]
Length = 496
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 18/177 (10%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAG 318
++++ + TE+++ F GCG+V RI AF+ F +E A AAL + G
Sbjct: 251 IFIAGLPWSATEDEVKEHFAGCGEVTGARIPLQNGRSSGTAFVTFAT-SEAAEAALAMDG 309
Query: 319 TMLG--FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
G + +R K DE+ +++ N+ V + V+ F
Sbjct: 310 QDFGGRWMKIRTAEKKNMF------------DEKPEGCTSVFIGNLSWDVDENTVRETF- 356
Query: 377 SVCGEVYRLRLLGDYHHSTRIAF--VEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
CGE+ RL D F V+F E+ A+ +G + IRV+ +K+
Sbjct: 357 GECGEILSCRLATDRETGEFRGFGHVDFASTEAVDEAVKLAGSYVNGRAIRVNYAKS 413
>gi|194702946|gb|ACF85557.1| unknown [Zea mays]
gi|413921126|gb|AFW61058.1| hypothetical protein ZEAMMB73_234884 [Zea mays]
Length = 456
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 18/202 (8%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNS 294
R+N ++ +R++ T++V D+ VT+ L F V +VV ++
Sbjct: 195 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLT---MR 251
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT---EDERE 351
+ F++F D E ARA + G + P+R+ P+ A V +P + + +
Sbjct: 252 TKGYGFVKFGDPNEQARAMTEMNGMLCSSRPMRIGPAANKKATVVQEKVPSAQGVQSDND 311
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
TI+ +D VT+ +K F + G+V +++ R FV++ SA A
Sbjct: 312 PNNTTIFVGGLDPNVTEDMLKQVF-TPYGDVVHVKI----PVGKRCGFVQYANRSSAEEA 366
Query: 412 LNC-SGVVLGSLPIRVSPSKTP 432
L G ++G +R+S ++P
Sbjct: 367 LVILQGTLVGGQNVRLSWGRSP 388
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 9/192 (4%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
+Y+ ++D +TE L F G+++ I D N + + FAF+ + + + +A +
Sbjct: 193 LYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAMEAMN 252
Query: 318 GTMLG---FYPVRVLPSKTAIAPVNPTF-LPRTEDEREMCARTIYCTNIDKKVTQADVKL 373
G G Y R ++ F R E + A +Y NID VT +++
Sbjct: 253 GLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRD 312
Query: 374 FFESVCGEVYRLRLL-GDYHHSTRIAFVEFVMAESA-IAALNCSGVVLGSLPIRVSPSKT 431
F S CG + ++++ D S FV F E A A ++ +G P+ ++ ++
Sbjct: 313 LFSS-CGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLYIAIAQR 371
Query: 432 PVRPRAPRLPMH 443
+ R +L +H
Sbjct: 372 K-KERKTQLNLH 382
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 250 QREEIIR---RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTD 305
++E+I++ +YV +ID VT+++L LF CG + ++ D + + F F+ F++
Sbjct: 284 RKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSN 343
Query: 306 EAEGARAALNLAGTMLGFYPVRV 328
E +A ++ G P+ +
Sbjct: 344 PEEANKAVMSFNGCTFHRKPLYI 366
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 17/165 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSV--LRFAFIEFTDEAEGARAALN 315
++YV D+ V E L A FV G + R+C D ++ L + ++ F + + RA
Sbjct: 13 SIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIRAIKL 72
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ L +RV+ +L R + R+ ++ N+ + A + F
Sbjct: 73 RNNSYLNGKVIRVM------------WLHRDPNARKSGRGNVFVKNLAGSIDNAGLHDLF 120
Query: 376 ESVCGEVYRLRLLGDYHHSTRIAFVEFVMAES---AIAALNCSGV 417
+ + ++ + S FV+F ES AI LN S V
Sbjct: 121 KKYGNILSSKVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTV 165
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL F GQVV R+C D + L + ++ + + +RA
Sbjct: 40 SLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 99
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L L +RV+ + R R+ I+ N+DK + + F
Sbjct: 100 LNFMALNGRAIRVM------------YSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETF 147
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428
S G + ++ D S FV++ E+A A++ +G++L + V P
Sbjct: 148 -SAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGP 201
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 236 GQGKRRMNSRTSLAQR-EEIIRRT--------VYVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ +++ T L Q+ E+ ++ +YV ++D+ VT+++L F G + C
Sbjct: 291 GKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSC 350
Query: 287 RICGDPNSVLRFA-FIEFTDEAEGARAALNLAGTMLGFYPVRV 328
++ DP V R + F+ F+ E +RA + G M+ P+ V
Sbjct: 351 KVMRDPTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYV 393
>gi|407846855|gb|EKG02815.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 422
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 260 YVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGT 319
Y+ +ID+ VT E L +F CG ++DC + G R+ FI+F E + AR A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFASEDDRAR-AMKYNGF 70
Query: 320 MLGFYPVRVLPSKTAIA 336
L ++V SK +
Sbjct: 71 TLAGRKIKVGVSKGNVG 87
>gi|71667313|ref|XP_820607.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70885958|gb|EAN98756.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 424
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 260 YVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGT 319
Y+ +ID+ VT E L +F CG ++DC + G R+ FI+F E + AR A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFASEDDRAR-AMKYNGF 70
Query: 320 MLGFYPVRVLPSKTAIA 336
L ++V SK +
Sbjct: 71 TLAGRKIKVGVSKGNVG 87
>gi|4530579|gb|AAD22102.1| Pad-1 [Neurospora crassa]
Length = 575
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
+E RRTV+V + ++ +L F G V + +I D N ++EF +E +
Sbjct: 177 DERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNE-DS 235
Query: 310 ARAALNLAGTMLGFYPVRVLPSK---------TAIAPVNPTFLPRTEDEREMCARTIYCT 360
+AAL L G L PV V ++ T + +P +P +Y
Sbjct: 236 VQAALQLTGQKLLGIPVIVQLTEAEKNRQVRTTETSGHHPNSIP---------FHRLYVG 286
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVV 418
NI +T+ D++ FE GE+ ++L D + +R FV+F A A AL +G
Sbjct: 287 NIHFSITEQDLQNVFEPF-GELEFVQLQKDDNGRSRGYGFVQFRDAGQAREALEKMNGFD 345
Query: 419 LGSLPIRVS 427
L PIRV
Sbjct: 346 LAGRPIRVG 354
>gi|413921124|gb|AFW61056.1| hypothetical protein ZEAMMB73_234884 [Zea mays]
Length = 453
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 18/202 (8%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNS 294
R+N ++ +R++ T++V D+ VT+ L F V +VV ++
Sbjct: 185 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLT---MR 241
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT---EDERE 351
+ F++F D E ARA + G + P+R+ P+ A V +P + + +
Sbjct: 242 TKGYGFVKFGDPNEQARAMTEMNGMLCSSRPMRIGPAANKKATVVQEKVPSAQGVQSDND 301
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
TI+ +D VT+ +K F + G+V +++ R FV++ SA A
Sbjct: 302 PNNTTIFVGGLDPNVTEDMLKQVF-TPYGDVVHVKI----PVGKRCGFVQYANRSSAEEA 356
Query: 412 LNC-SGVVLGSLPIRVSPSKTP 432
L G ++G +R+S ++P
Sbjct: 357 LVILQGTLVGGQNVRLSWGRSP 378
>gi|145478851|ref|XP_001425448.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392518|emb|CAK58050.1| unnamed protein product [Paramecium tetraurelia]
Length = 232
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRI--CGDPNSVLRFAFIEFTDEAEGARAALNL 316
V++S + +E + +LF CG+++ ++ D N +L + I F+D +E + AL L
Sbjct: 4 VFISGLPYTASENDVQSLFEDCGEILSIKLPRYQDSNRLLGYGHITFSD-SEAIQKALAL 62
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
GT LG + V +K P P P C TI+ N+ + + F
Sbjct: 63 NGTQLGGRYIDVKEAK-GTQPQKPNVPPPD------CL-TIFVKNLSYDLNADQIGDSFR 114
Query: 377 SVCGEVYRLRLLGDYHHSTR----IAFVEFVMAESAIAALNCSG 416
CG+V +R++ Y+ ++ A+++F +S I AL +G
Sbjct: 115 P-CGKVANVRMV--YNTVSKNFKGFAYIDFEDHQSVIKALQMNG 155
>gi|336468898|gb|EGO57061.1| hypothetical protein NEUTE1DRAFT_66048 [Neurospora tetrasperma FGSC
2508]
gi|350288804|gb|EGZ70029.1| RNA splicing factor Pad-1 [Neurospora tetrasperma FGSC 2509]
Length = 571
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
+E RRTV+V + ++ +L F G V + +I D N ++EF +E +
Sbjct: 178 DERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNE-DS 236
Query: 310 ARAALNLAGTMLGFYPVRVLPSK---------TAIAPVNPTFLPRTEDEREMCARTIYCT 360
+AAL L G L PV V ++ T + +P +P +Y
Sbjct: 237 VQAALQLTGQKLLGIPVIVQLTEAEKNRQVRTTETSGHHPNSIP---------FHRLYVG 287
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVV 418
NI +T+ D++ FE GE+ ++L D + +R FV+F A A AL +G
Sbjct: 288 NIHFSITEQDLQNVFEPF-GELEFVQLQKDDNGRSRGYGFVQFRDAGQAREALEKMNGFD 346
Query: 419 LGSLPIRV 426
L PIRV
Sbjct: 347 LAGRPIRV 354
>gi|71993551|ref|NP_500666.2| Protein T08B6.5 [Caenorhabditis elegans]
gi|373220496|emb|CCD73994.1| Protein T08B6.5 [Caenorhabditis elegans]
Length = 177
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY 391
K A++ P E++ + AR++Y N+D K T ++++ F +VCG+V R+ + D
Sbjct: 23 KQALSASKKYMAPTAEEQEKTDARSVYVGNVDWKSTVSEIEEHF-AVCGKVARVTIPKDK 81
Query: 392 H--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
+ AFVEF ES AL SG + + I V+ +T
Sbjct: 82 FTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRT 123
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEA 307
++E+ R+VYV ++D + T ++ F CG+V I D + + FAF+EF +
Sbjct: 39 EQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEF-QKL 97
Query: 308 EGARAALNLAGTML 321
E + AL L+GTM
Sbjct: 98 ESVQLALVLSGTMF 111
>gi|217074564|gb|ACJ85642.1| unknown [Medicago truncatula]
gi|388521359|gb|AFK48741.1| unknown [Medicago truncatula]
Length = 407
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 25/176 (14%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
R+VYV ++ QVTE L +F G G V C++ S + FI + D A A L L
Sbjct: 42 RSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKS--SYGFIHYFDRRSAALAILTL 99
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
G L P++V A A + E I+ ++ +VT D LF
Sbjct: 100 NGRHLFGQPIKV---NWAYA--------SGQREDTSGHYNIFVGDLSPEVT--DATLF-- 144
Query: 377 SVCGEVYR----LRLLGDYH--HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 425
C VY+ R++ D S FV F + A +A+N +G LGS IR
Sbjct: 145 -ACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIR 199
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEVIKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A++ +G++L
Sbjct: 117 DTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLL 163
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 25/176 (14%)
Query: 165 DMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNG--- 221
D + LQ+LFS+ M S+ +++ GF F N F H
Sbjct: 203 DEQRLQDLFSQFGKML------SVKVMRDDSGHSRGFG---FVN----FEKHEEAQKAVV 249
Query: 222 NVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQ 272
N+N R G+ ++R+ + L +R E +++ +YV ++D + +E+
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 273 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
L F G + ++ + F F+ F+ E +A + G ++G P+ V
Sbjct: 310 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 25/184 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F E AA N TM G +L + F R E E E+ AR + T
Sbjct: 143 VHF----ETHEAAQNAISTMNGM----LLNDRKVFV---GHFKSRREREVELGARAMEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLL-GDYHHSTRIAFVEFVMAESA-IAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A +
Sbjct: 192 NIYVKNLHVDVDEQRLQDLF--SQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 413 NCSG 416
N +G
Sbjct: 250 NMNG 253
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ TE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV ++D VTE L +F G V R+C D + L +A++ + + A+G RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
+L +++ R++ S+ R R+ I+ N+D+ + +
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQ------------RDPALRKTGQGNIFIKNLDQSIDNKALH 151
Query: 373 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVL 419
F + G++ ++ D + +R AFV + E+A AA+ +G++L
Sbjct: 152 DTF-AAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLL 199
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T +++ ++DQ + + L F G ++ C++ D N R FA
Sbjct: 118 RIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFA 177
Query: 300 FIEFTDEAEGARAALNLAGTML 321
F+ ++ E A AA+ ML
Sbjct: 178 FVHYST-GEAADAAIKAVNGML 198
>gi|85076094|ref|XP_955878.1| hypothetical protein NCU03491 [Neurospora crassa OR74A]
gi|28916904|gb|EAA26642.1| hypothetical protein NCU03491 [Neurospora crassa OR74A]
Length = 576
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
+E RRTV+V + ++ +L F G V + +I D N ++EF +E +
Sbjct: 178 DERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNE-DS 236
Query: 310 ARAALNLAGTMLGFYPVRVLPSK---------TAIAPVNPTFLPRTEDEREMCARTIYCT 360
+AAL L G L PV V ++ T + +P +P +Y
Sbjct: 237 VQAALQLTGQKLLGIPVIVQLTEAEKNRQVRTTETSGHHPNSIP---------FHRLYVG 287
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVV 418
NI +T+ D++ FE GE+ ++L D + +R FV+F A A AL +G
Sbjct: 288 NIHFSITEQDLQNVFEPF-GELEFVQLQKDDNGRSRGYGFVQFRDAGQAREALEKMNGFD 346
Query: 419 LGSLPIRVS 427
L PIRV
Sbjct: 347 LAGRPIRVG 355
>gi|226504372|ref|NP_001141359.1| uncharacterized protein LOC100273450 [Zea mays]
gi|194704160|gb|ACF86164.1| unknown [Zea mays]
gi|413921127|gb|AFW61059.1| hypothetical protein ZEAMMB73_234884 [Zea mays]
Length = 453
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 18/202 (8%)
Query: 241 RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNS 294
R+N ++ +R++ T++V D+ VT+ L F V +VV ++
Sbjct: 195 RLNWASAGEKRDDTPDYTIFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLT---MR 251
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT---EDERE 351
+ F++F D E ARA + G + P+R+ P+ A V +P + + +
Sbjct: 252 TKGYGFVKFGDPNEQARAMTEMNGMLCSSRPMRIGPAANKKATVVQEKVPSAQGVQSDND 311
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
TI+ +D VT+ +K F + G+V +++ R FV++ SA A
Sbjct: 312 PNNTTIFVGGLDPNVTEDMLKQVF-TPYGDVVHVKI----PVGKRCGFVQYANRSSAEEA 366
Query: 412 LNC-SGVVLGSLPIRVSPSKTP 432
L G ++G +R+S ++P
Sbjct: 367 LVILQGTLVGGQNVRLSWGRSP 388
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D S L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ ++ N+D + D K +
Sbjct: 72 MNFEVIKGRPVRIMWSQ------------RDPGLRKSGVGNVFIKNLDDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMNGMLL 163
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 15/122 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D + + L F G ++ C++ D N F
Sbjct: 83 RIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + RA + G +L V V F R E E E AR + T
Sbjct: 143 VHFETQEAATRAIQTMNGMLLNDRKVFVG-----------HFKSRKEREAEFGARAMEFT 191
Query: 361 NI 362
N+
Sbjct: 192 NV 193
>gi|224078632|ref|XP_002305583.1| predicted protein [Populus trichocarpa]
gi|222848547|gb|EEE86094.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 25/203 (12%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEF 303
+R++ T++V D+ VT+ L F V +VV R+ G + F+ F
Sbjct: 135 KRDDSPDFTIFVGDLAADVTDFMLQETFRAHFPSVKGAKVVIDRLTGRTKG---YGFVRF 191
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFL------PRTEDEREMCARTI 357
DE+E RA + G P+RV + A V + P+ +++ + TI
Sbjct: 192 GDESEQLRAMTEMNGAFCSTRPMRVGLASNKKAVVGQQYPKASYQNPQPQNDGDPNNTTI 251
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALNC 414
+ N+D V +K F G++ +++ R FV+F AE A+ LN
Sbjct: 252 FVGNLDSNVMDDHLKELFGQY-GQLLHVKIPA----GKRCGFVQFADRSSAEEALKMLN- 305
Query: 415 SGVVLGSLPIRVSPSKTPVRPRA 437
G L IR+S + P +A
Sbjct: 306 -GAQLSGQNIRLSWGRNPSNKQA 327
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++Y+ D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R I+ N+DK + D K +
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRRSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAADKAIEKMNGMLL 163
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 74/179 (41%), Gaps = 21/179 (11%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +RR+ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAEFGAKAREFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + ++ +FE G+ ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVD 250
>gi|242003014|ref|XP_002422579.1| squamous cell carcinoma antigen, putative [Pediculus humanus
corporis]
gi|212505369|gb|EEB09841.1| squamous cell carcinoma antigen, putative [Pediculus humanus
corporis]
Length = 858
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 31/192 (16%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
RTV+VS++D E+ + F CG++ D R+ D + + ++EF E ARA
Sbjct: 602 RTVFVSNLDFTTEEDVIRETFSCCGEITDLRLVRDYKGRSKGYCYVEFEKSVEAARA--- 658
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDERE-----------MCARTIYCTNIDK 364
L + P F+ + + ++E M ++ +
Sbjct: 659 -------------LKKDRELINGRPMFVSKCDPDKETRSGGFKYSSGMEKNKLFVRGLPF 705
Query: 365 KVTQADVKLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFV-MAESAIAALNCSGVVLGSL 422
T D+K F S G + +RL+ + HS +A+VEF A +A A L+ G + +
Sbjct: 706 STTVEDLKTLF-SKFGSLKDVRLVTYRNGHSKGLAYVEFEDEASAAQAVLSTDGTTIENK 764
Query: 423 PIRVSPSKTPVR 434
I V+ S P R
Sbjct: 765 QISVAISNPPER 776
>gi|15239715|ref|NP_197436.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75331115|sp|Q8VXZ9.1|R47BP_ARATH RecName: Full=Polyadenylate-binding protein RBP47B';
Short=Poly(A)-binding protein RBP47B'; AltName:
Full=RNA-binding protein 47B'; Short=AtRBP47B prime;
Short=AtRBP47B'
gi|18377731|gb|AAL67015.1| putative DNA binding protein ACBF [Arabidopsis thaliana]
gi|21281189|gb|AAM45052.1| putative DNA binding protein ACBF [Arabidopsis thaliana]
gi|332005306|gb|AED92689.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 425
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 37/204 (18%)
Query: 257 RTVYVSDIDQQVTEEQLAALF-VGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAA 313
+++V D+ VT+ L F V V ++ DP++ + F++F +E+E RA
Sbjct: 116 HSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAM 175
Query: 314 LNLAGTMLGFYPVRV------------------------LPSKTAIAPVNPTFLPRTEDE 349
+ G P+R+ +PS A APV P E
Sbjct: 176 AEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVA-APVQAYVAP---PE 231
Query: 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAI 409
++ TI N+D+ VT+ ++K F S GEV +++ + +V+F SA
Sbjct: 232 SDVTCTTISVANLDQNVTEEELKKAF-SQLGEVIYVKIPA----TKGYGYVQFKTRPSAE 286
Query: 410 AALN-CSGVVLGSLPIRVSPSKTP 432
A+ G V+G +R+S SK P
Sbjct: 287 EAVQRMQGQVIGQQAVRISWSKNP 310
>gi|18376336|emb|CAD21082.1| RNA splicing factor Pad-1 [Neurospora crassa]
Length = 571
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEG 309
+E RRTV+V + ++ +L F G V + +I D N ++EF +E +
Sbjct: 178 DERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNE-DS 236
Query: 310 ARAALNLAGTMLGFYPVRVLPSK---------TAIAPVNPTFLPRTEDEREMCARTIYCT 360
+AAL L G L PV V ++ T + +P +P +Y
Sbjct: 237 VQAALQLTGQKLLGIPVIVQLTEAEKNRQVRTTETSGHHPNSIP---------FHRLYVG 287
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVV 418
NI +T+ D++ FE GE+ ++L D + +R FV+F A A AL +G
Sbjct: 288 NIHFSITEQDLQNVFEPF-GELEFVQLQKDDNGRSRGYGFVQFRDAGQAREALEKMNGFD 346
Query: 419 LGSLPIRV 426
L PIRV
Sbjct: 347 LAGRPIRV 354
>gi|432865706|ref|XP_004070573.1| PREDICTED: RNA-binding protein 39-like [Oryzias latipes]
Length = 516
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389
P K +PV T +ER+ ART++C + ++ D++ FF +V G+V +R++
Sbjct: 126 PPKKERSPVRQPIDNLTPEERD--ARTVFCMQLAARIRARDLEDFFSAV-GKVRDVRIIS 182
Query: 390 DYH--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
D + S IA++EFV S A+ +G L +PI V S+
Sbjct: 183 DRNSRRSKGIAYIEFVETSSVPLAIGLTGQRLLGVPIIVQASQ 225
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 11/181 (6%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEG 309
EE RTV+ + ++ L F G+V D RI D NS A+IEF E
Sbjct: 144 EERDARTVFCMQLAARIRARDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYIEFV-ETSS 202
Query: 310 ARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART-IYCTNIDKKVTQ 368
A+ L G L P+ V S+ A N ++ +Y ++ +T+
Sbjct: 203 VPLAIGLTGQRLLGVPIIVQASQ---AEKNRAAAAANNLQKGSAGPMRLYVGSLHFNITE 259
Query: 369 ADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIR 425
++ FE G++ ++L+ D S F+ F AE A AL +G L P++
Sbjct: 260 EMLRGIFEPF-GKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMK 318
Query: 426 V 426
V
Sbjct: 319 V 319
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NS 294
Q ++ + S +Q E ++YV D++ V+E L +F G V R+C D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA 354
L +A++ F D G +A L + P++ + + +P+ R+ +
Sbjct: 78 SLGYAYVNFNDHEAGRKAI-----EQLNYTPIKGRLCRIMWSQRDPSL-------RKKGS 125
Query: 355 RTIYCTNIDKKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR----IAFVEFVMAESA 408
I+ N+ + D K ++ SV G++ ++ D + ++ + F E A+ A
Sbjct: 126 GNIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEA 182
Query: 409 IAALNCSGVVLGSLPIRVSP 428
I ALN G++L I V+P
Sbjct: 183 IDALN--GMLLNGQEIYVAP 200
>gi|356512787|ref|XP_003525097.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
Length = 554
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 8/179 (4%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAA 313
+RTV+ + + TE + F G+V D R+ D NS +IEF D A A
Sbjct: 194 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD-AMSVPMA 252
Query: 314 LNLAGTMLGFYPVRVLPS---KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370
+ L+G +L PV V PS K + R +Y N+ +T++
Sbjct: 253 IALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQ 312
Query: 371 VKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVV-LGSLPIRVS 427
++ FE EV +L L + H FV+F E A AA + +G + + I+VS
Sbjct: 313 LREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVS 371
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVE 401
P + ER+ RT++ + K T+ DV FF S G+V +RL+ D + S + ++E
Sbjct: 186 PEADPERDQ--RTVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVGYIE 242
Query: 402 FVMAESAIAALNCSGVVLGSLPIRVSPSKT 431
F A S A+ SG +L P+ V PS+
Sbjct: 243 FYDAMSVPMAIALSGQLLLGQPVMVKPSEA 272
>gi|195400098|ref|XP_002058655.1| GJ14540 [Drosophila virilis]
gi|194142215|gb|EDW58623.1| GJ14540 [Drosophila virilis]
Length = 472
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
+T+YV ++D V+E+ L ALF G V C+I +P + +AFIE+++ + A +
Sbjct: 7 KTLYVGNLDGSVSEDLLIALFGKMGPVKSCKIIREPGND-PYAFIEYSNYQAASTALTAM 65
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+ ++V A +P N P+T+ I+ ++ ++ ++ F
Sbjct: 66 NKRVFLDKEIKV---NWATSPGN---TPKTDISSH---HHIFVGDLSPEIETETLREAFA 116
Query: 377 SVCGEVYRLRLLGDYH--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKT 431
GE+ R++ D S AFV FV AE+AI A+N G +GS IR + S
Sbjct: 117 PF-GEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRTNWSTR 173
Query: 432 PVRP 435
+ P
Sbjct: 174 KLPP 177
>gi|125977312|ref|XP_001352689.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
gi|54641438|gb|EAL30188.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
Length = 352
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAG 318
+++ ++D++ +L ALF G VV+C + V + F+ E +G A NL G
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDV------VKNYGFVHMETEQQGRDAIQNLNG 62
Query: 319 TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESV 378
+L ++V +K+ AP PT I+ N+ K +V+ F+
Sbjct: 63 YVLNDNAIKVEAAKSRRAPNTPT-------------TKIFVGNLTDKTRAPEVRELFQKY 109
Query: 379 CGEVYRLRLLGDYHHSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKTPVRP 435
G V ++ +Y FV + AI LN G V+ P++V S + VRP
Sbjct: 110 -GTVVECDIVRNY------GFVHLDCVGDVQDAIKELN--GRVVDGQPLKVQVSTSRVRP 160
Query: 436 R 436
+
Sbjct: 161 K 161
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 29/184 (15%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T +++ ++D+Q+ + L F G V+ C++ D N R F
Sbjct: 128 RIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFGNVLSCKVATDENGRSRGFG 187
Query: 300 FIEFTDEAEGARAALNLAGTML--------GFYPVRVLPSKTAIAPVNPTFLPRTEDERE 351
F+ + D AE A A+ ML G Y + K A + DE++
Sbjct: 188 FVHY-DTAEAADTAIKAVNGMLLNDKKVFVGHY----ISKKERQAHI---------DEQK 233
Query: 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIA 410
+Y N+D +VT + F GEV + D ++ FV F ESA A
Sbjct: 234 SQFTNLYVKNLDTEVTDDEFNDMFAKF-GEVTSAVVQKDEEGKSKGFGFVNFKDHESAQA 292
Query: 411 ALNC 414
A++
Sbjct: 293 AVDA 296
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L +F G V R+C D + L +A++ + + A+G RA
Sbjct: 57 SLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 116
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L +++ R++ S+ R R+ I+ N+D+++ + F
Sbjct: 117 LNYSLIKNRACRIMWSQ------------RDPALRKTGQGNIFIKNLDEQIDHKALHDTF 164
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVL 419
+ G V ++ D + +R FV + AE+A A+ +G++L
Sbjct: 165 -AAFGNVLSCKVATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLL 209
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 249 AQREEIIRRT----------------VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP 292
A+REE +R++ +Y+ +++ + +++L A F G + C+I D
Sbjct: 316 AEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRDE 375
Query: 293 NSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332
+ F F+ ++ E +A + MLG P+ V P++
Sbjct: 376 KGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQ 416
>gi|17505625|ref|NP_492504.1| Protein PABP-2 [Caenorhabditis elegans]
gi|3874370|emb|CAB02750.1| Protein PABP-2 [Caenorhabditis elegans]
Length = 205
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFIEFT 304
++ E ++VYV ++D T E++ F GCG V + C R G P FA++EFT
Sbjct: 71 EKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKG---FAYVEFT 127
Query: 305 DEAEGARAALNLAGTMLGFYPVRVLPSKT 333
E EG + AL + ++L ++V P +T
Sbjct: 128 -EKEGMQNALAMTDSLLRGRQIKVDPKRT 155
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVM 404
E++ E A+++Y N+D T +++ F CG V R+ + D H A+VEF
Sbjct: 70 EEKAEADAKSVYVGNVDYGATAEEIEQHFHG-CGSVSRVTIQCDRFSGHPKGFAYVEFTE 128
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
E AL + +L I+V P +T
Sbjct: 129 KEGMQNALAMTDSLLRGRQIKVDPKRT 155
>gi|395863338|ref|XP_003803853.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Otolemur
garnettii]
gi|395863342|ref|XP_003803855.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Otolemur
garnettii]
Length = 487
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 329 LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL 388
LP + +PV T +ER+ ART++C + ++ D++ FF +V G+V +R++
Sbjct: 87 LPLRKDKSPVREPIDNLTPEERD--ARTVFCMQLAARIRPRDLEAFFSTV-GKVRDVRMI 143
Query: 389 GDYH--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
D + S IA+VEFV S A+ +G + +PI V S+
Sbjct: 144 SDRNARRSKGIAYVEFVDVSSVPLAIGLTGQRVFGVPILVRASQ 187
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEG 309
EE RTV+ + ++ L A F G+V D R+ D N+ A++EF D
Sbjct: 106 EERDARTVFCMQLAARIRPRDLEAFFSTVGKVRDVRMISDRNARRSKGIAYVEFVD-VSS 164
Query: 310 ARAALNLAGTMLGFYPVRVLPSKT----AIAPVNPTFLPRTEDEREMCARTIYCTNIDKK 365
A+ L G + P+ V S+ A A N R R +Y ++
Sbjct: 165 VPLAIGLTGQRVFGVPILVRASQAEKNRAAAMANNLQKGRAGPMR------LYVGSLHLN 218
Query: 366 VTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAAL-NCSGVVLGSL 422
+T+A ++ FE G + ++L+ D S F+ F +E A AL +G+ L
Sbjct: 219 ITEAMLRGIFEPF-GRLESIQLMKDSETGRSKGYGFITFSDSECAKKALEQLNGLELAGR 277
Query: 423 PIRV 426
P++V
Sbjct: 278 PMKV 281
>gi|242047468|ref|XP_002461480.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
gi|241924857|gb|EER98001.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
Length = 338
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 74/182 (40%), Gaps = 23/182 (12%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALNL 316
++V ++ T E+LA +F G+V D +I D N FAF+ E A+A
Sbjct: 112 LFVGNLPYTYTSEELAQVFAEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQMF 171
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDER--EMCAR-------TIYCTNIDKKVT 367
G +LG R VN +PR + R M R IY N+ V
Sbjct: 172 DGALLGGRTAR----------VNYPEVPRGGERRTVTMAGRRRDDGTYKIYAGNLGWGVR 221
Query: 368 QADVKLFFESVCGEV-YRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVLGSLPIR 425
++ FE G + R+ + S FV F AE A AAL GV L P+R
Sbjct: 222 ADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLR 281
Query: 426 VS 427
+S
Sbjct: 282 LS 283
>gi|303286577|ref|XP_003062578.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456095|gb|EEH53397.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 235
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 247 SLAQREEIIRRTVYVSDI----DQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIE 302
S A +E I RTV+V I + ++TE +A F G VV R+ R A++E
Sbjct: 2 SRASDQEKISRTVHVGGIRGLDNGEITERDVAEFFSQQGPVVAVRVH------ARSAWVE 55
Query: 303 FTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTI 357
F D+A AALNL G G + +RV SKTAI L RT + AR +
Sbjct: 56 FADDAS-TMAALNLDGVTTGGHNLRVNRSKTAIN--TNALLERTREASIAAARAV 107
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 349 EREMCARTIYCTNI----DKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404
++E +RT++ I + ++T+ DV FF S G V +R+ H+ R A+VEF
Sbjct: 6 DQEKISRTVHVGGIRGLDNGEITERDVAEFF-SQQGPVVAVRV-----HA-RSAWVEFAD 58
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTPV 433
S +AALN GV G +RV+ SKT +
Sbjct: 59 DASTMAALNLDGVTTGGHNLRVNRSKTAI 87
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 26/183 (14%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +RR+ V++ ++D+Q+ + + F G ++ C++ D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSAFGNILSCKVALDEKGNSKGYG 133
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART--- 356
F+ F E + + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIEKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 357 --IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR----IAFVEFVMAESAIA 410
+Y N ++ +K FFE G++ +++ ++ +AF AE+A+
Sbjct: 183 TNVYVKNFTEEFDDEKLKDFFEPY-GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 411 ALN 413
ALN
Sbjct: 242 ALN 244
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ Q + E L F G V+ R+C D L +A++ F A+ RA
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R ++ N+D+++ + F
Sbjct: 63 MNFDLIRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDRQIDNKAIYDTF 110
Query: 376 ESVCGEVYRLRL-LGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRV 426
S G + ++ L + +S FV F E+A ++ +G++L + V
Sbjct: 111 -SAFGNILSCKVALDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYV 162
>gi|261327080|emb|CBH10056.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 623
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVL--RFAFIEFTDEAEGARAALNL 316
V+V ++ + VTEEQL A F CG++ C+I + N+ L A I F A A A ++
Sbjct: 399 VFVGNLGEDVTEEQLKAHFSVCGKINSCKIIVNKNTRLPTGIASIVFAIPAYAAYAQKHM 458
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDE 349
G+ L + +RV + A AP+ PR ++E
Sbjct: 459 HGSCLRGHVLRVDRGEEASAPLVSELPPRDDEE 491
>gi|342878966|gb|EGU80243.1| hypothetical protein FOXB_09170 [Fusarium oxysporum Fo5176]
Length = 1079
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 226 NAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD 285
+A +R K FGQ + + L TVYV++ ++ + LF CG+++
Sbjct: 655 SALLRDGKYFGQSQLTVKLGNDL---------TVYVANYPPAADQKYIRDLFKDCGEILS 705
Query: 286 CRICG-DPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLP 344
R+ ++ RF ++ F D+ E + A+ GT+L + + + P
Sbjct: 706 IRLPSLKVDARRRFCYVSFRDQ-EASAKAVKKDGTVL----------EGGLKLLAKYSDP 754
Query: 345 RTEDEREMC---ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFV 400
+ RE R I+ +N+D+ T+AD+K F S G V R+ L + T+ AF+
Sbjct: 755 SHKKAREGALAEGREIHISNLDRTATEADLKEVF-SKYGNVTRVNLPRNLVGKTKGFAFI 813
Query: 401 EFVM---AESAIAALN 413
+F AE A+A +N
Sbjct: 814 DFATKEEAEKAVAEMN 829
>gi|209877643|ref|XP_002140263.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209555869|gb|EEA05914.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 302
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 26/195 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
++++ +I TEE + F +++ P + RF ++F + G A+ L
Sbjct: 11 SIFIKNISPLATEESVCKAFEDLKNEILGVSFHVYPGTSQRFCQVDFKTSS-GVTNAMGL 69
Query: 317 AGTMLGFYPVRVLPSKTAIAPV-------NPTFLPRTEDER------EMCARTIYCTNID 363
G+ L P+ + T IAPV P P++ +R E +RTI NI
Sbjct: 70 NGSTLLGVPMSI----TVIAPVPIKLNMKYPKISPKSTTQRSANILEERLSRTILVENIP 125
Query: 364 KKVTQADVKLFFE---SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA-IAALNCSGVVL 419
+K TQ ++K+FF S+ + R +GD S R +EF E A +VL
Sbjct: 126 EKFTQNELKIFFSNFGSILDISFEQRQIGD--ESLRCT-IEFENKEEANKVRRQNKDIVL 182
Query: 420 GSLPIRVSPSKTPVR 434
G +R+S K+ +R
Sbjct: 183 GDRVLRISTPKSMIR 197
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVD---CRICGDPNSVLRFAFIEFTDEAEGARA 312
R ++YV D+D +VTE L +F G + + CR C L + ++ F + +A
Sbjct: 18 RLSLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCR-CSLTGRSLCYGYVNFYRPYDAYKA 76
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR-----TIYCTNIDKKVT 367
NL T L +R++ +R CAR +Y N+D +
Sbjct: 77 LSNLNHTYLKGKLMRIMWC-----------------QRNPCARKSGIGNLYVKNLDASID 119
Query: 368 QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411
A ++ F S G + +++ ++ S FV+F +SA+AA
Sbjct: 120 SAGLQSLF-SKFGTILSCKVVEEHGKSKGYGFVQFDSEDSALAA 162
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R QR R++ +YV ++D + L +LF G ++ C++ + + F
Sbjct: 91 RIMWCQRNPCARKSGIGNLYVKNLDASIDSAGLQSLFSKFGTILSCKVVEEHGKSKGYGF 150
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE-----DEREMCAR 355
++F E A L TML + V F+ ++E E+
Sbjct: 151 VQFDSEDSALAARTALHDTMLKEKKLYV-----------SRFVKKSERTTATSYDELKFT 199
Query: 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N+ K +TQ F S GE+ ++ D++ +R FV+F E A A++
Sbjct: 200 NLYVKNLSKDMTQDAFHNMF-SAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVD 257
>gi|384491753|gb|EIE82949.1| hypothetical protein RO3G_07654 [Rhizopus delemar RA 99-880]
Length = 459
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 45/208 (21%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
R VY+ ID +T+E+L A + G + + ++ + + AF+ F + A + L
Sbjct: 158 RAVYIGKIDSSLTKEKLTAEAIKYGPIEEVKVVVEKSC----AFVHFLNIASAVKCVTEL 213
Query: 317 AGTMLGFYPVRVLPSKTAIA---------------------PVNPTFLPRTEDEREMCAR 355
T+ + RV +K A P+ PT +T R
Sbjct: 214 P-TIPEWQSKRVNYAKDHCAGNLTNESFTSPASFGFDAYGNPMMPTLGLQTSPNAGNILR 272
Query: 356 TIYCTNIDKKVTQADVKLFFESVC-----GEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410
TIY ++ Q DVK +E +C G V ++R D H IAFV F+ A +AI+
Sbjct: 273 TIYIGSL-----QPDVK--YEDICNAIRGGNVLQVRYFPDKH----IAFVSFMDAGTAIS 321
Query: 411 ALNCS---GVVLGSLPIRVSPSKTPVRP 435
N + G+V+ +RV K P
Sbjct: 322 VFNYANSQGLVIKGKRVRVGWGKPSTIP 349
>gi|165761289|pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
gi|165761291|pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
gi|165761292|pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
gi|165761293|pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
gi|165761294|pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFIEFTDEAEGAR 311
R++YV ++D T E+L A F GCG V + C + G P FA+IEF+D+ E R
Sbjct: 6 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDK-ESVR 61
Query: 312 AALNLAGTMLGFYPVRVLPSKT 333
+L L ++ ++V+P +T
Sbjct: 62 TSLALDESLFRGRQIKVIPKRT 83
>gi|281340677|gb|EFB16261.1| hypothetical protein PANDA_006204 [Ailuropoda melanoleuca]
Length = 196
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 22/163 (13%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE+ L F G V+ RIC D L +A++ F A+ +A
Sbjct: 3 SLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDT 62
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ M+ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 63 MNFDMIKGKPIRLMWSQ------------RDAYLRKSGIGNVFIKNLDKSI---DNKTLY 107
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFV---MAESAIAALN 413
E S G++ +++ D S AFV F A+ AI +N
Sbjct: 108 EHFSAFGKILSSKVMSDDQGSRGYAFVHFQNQNAADRAIEEMN 150
>gi|255572397|ref|XP_002527136.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223533496|gb|EEF35238.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 642
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 11/186 (5%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
+T++V ++ QV + F G G+VVD R D + + F +EF E A AL
Sbjct: 387 KTLFVGNLPFQVERADVEDFFKGAGEVVDVRFALDQDQRFKGFGHVEFA-TIEAAHEALK 445
Query: 316 LAGTMLGFYPVR--VLPSKTAIAPVNPTFLPRTEDEREMCART--IYCTNIDKKVTQADV 371
L G L VR + + AP P ++ ++T I+ DK + + ++
Sbjct: 446 LNGQSLNGREVRLDLARERGERAPYTPYSGKDNSFQKGGRSQTQKIFVRGFDKFLGEDEI 505
Query: 372 KLFFES---VCGEVYRLRLLGDYHHST--RIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
+ CGE+ R+ L DY +A+VEF A AL +G LG + V
Sbjct: 506 RNSLGEHFKTCGEITRISLPTDYETGAIKGMAYVEFQDATGFNKALEFNGSQLGDQYLTV 565
Query: 427 SPSKTP 432
+K P
Sbjct: 566 EEAKPP 571
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,630,748,777
Number of Sequences: 23463169
Number of extensions: 271723487
Number of successful extensions: 1015218
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 4016
Number of HSP's that attempted gapping in prelim test: 994744
Number of HSP's gapped (non-prelim): 18976
length of query: 443
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 297
effective length of database: 8,933,572,693
effective search space: 2653271089821
effective search space used: 2653271089821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)