BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013446
(443 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 34/213 (15%)
Query: 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCR 287
S G G+RR +S T++V D+ VT+ L F V +VV R
Sbjct: 163 SLGAGERRDDS----------AEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDR 212
Query: 288 ICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS---KTAIAPVNPTFL- 343
I G + F++F DE+E RA + G + P+R+ P+ K P T+
Sbjct: 213 ITGRSKG---YGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQN 269
Query: 344 PR-TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF 402
P+ T+ E + TI+ +D V + ++ F S GE+ ++++ R FV+F
Sbjct: 270 PQATQGESDPNNTTIFVGGLDPTVAEEHLRQVF-SPYGELVHVKIVA----GKRCGFVQF 324
Query: 403 ---VMAESAIAALNCSGVVLGSLPIRVSPSKTP 432
AE A+++LN G LG IR+S ++P
Sbjct: 325 GTRASAEQALSSLN--GTQLGGQSIRLSWGRSP 355
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L +F G V R+C D + L +A++ F ++A+G RA
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRAL-- 104
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L + P++ P + + +P R+ A IY N+D + + F
Sbjct: 105 ---EELNYSPIKERPCRIMWSQRDPAL-------RKTGAGNIYIKNLDPAIDNKALHDTF 154
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
S G++ ++ D + +S FV + AESA +A+ + +G++L + V P
Sbjct: 155 -SAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGP 208
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 122
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 123 LAFNGVMFGDRPLKINHSNNAI 144
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 414
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 415 SGVVLGSLPIRV 426
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 125
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 126 LAFNGVMFGDRPLKINHSNNAI 147
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 39/254 (15%)
Query: 199 NGFNGGF----FANNSLIFNNHNARNGNV--NANAAVRRKKS-FGQGKRRMNSRTSLAQR 251
NG++ G+ F N++ N NG ++ A R + G G+RR +
Sbjct: 117 NGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERR---------Q 167
Query: 252 EEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTD 305
E TV+V D+ VT+ L F V +VV+ R G + F+ F D
Sbjct: 168 AEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKG---YGFVRFAD 224
Query: 306 EAEGARAALNLAGTMLGFYPVRVLPSKT----AIAPVNPTFLPRTEDEREMCARTIYCTN 361
E+E RA + G P+R P+ + P + E + TI+
Sbjct: 225 ESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGA 284
Query: 362 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALNCSGVV 418
+D+ VT+ D+K F GE+ +++ R FV++ AE A++ LN G
Sbjct: 285 VDQSVTEDDLKSVFGQF-GELVHVKIPA----GKRCGFVQYANRACAEQALSVLN--GTQ 337
Query: 419 LGSLPIRVSPSKTP 432
LG IR+S ++P
Sbjct: 338 LGGQSIRLSWGRSP 351
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 371
AAL+ T LG P L + V+P+ + + RT+Y N++ + T AD
Sbjct: 38 AALDPNITALGEIPQPPL-----MGNVDPSKI-------DEIRRTVYVGNLNSQTTTADQ 85
Query: 372 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 255 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAA 313
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ R A
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR-A 125
Query: 314 LNLAGTMLGFYPVRVLPSKTAI 335
L G M G P+++ S AI
Sbjct: 126 LAFNGVMFGDRPLKINHSNNAI 147
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 258 TVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGAR 311
T++V D+ +VT+ L+ F V +VV R G + F+ F DE E R
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKG---YGFVRFADENEQMR 211
Query: 312 AALNLAGTMLGFYPVRVLPSKTAIA-PVNPTFLPRTE----DEREMCARTIYCTNIDKKV 366
A + G P+R+ P+ A P+ P T+ + + TI+ +D V
Sbjct: 212 AMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANV 271
Query: 367 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALNCSGVVLGSLP 423
T ++K F GE+ +++ R FV++ AE A++ LN G LG
Sbjct: 272 TDDELKSIFGQF-GELLHVKI----PPGKRCGFVQYANKASAEHALSVLN--GTQLGGQS 324
Query: 424 IRVSPSKTP 432
IR+S ++P
Sbjct: 325 IRLSWGRSP 333
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 162
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 163 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 207
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 164 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLL 208
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFT--DEAEGARAAL 314
VYV +IDQ TEE+ LF G++ + D S F F+ FT D A A AL
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 315 N 315
N
Sbjct: 298 N 298
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 110 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 157
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 158 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 202
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 121 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 180
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A +
Sbjct: 181 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 232
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
Y NID+ VT+ + + FE GE+ L D +R FV F ESA AA++
Sbjct: 233 YIKNIDQDVTEEEFRELFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 112 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 159
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 160 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 204
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 123 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 182
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A I
Sbjct: 183 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFDEMKANFTNI 234
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
Y NID VT+ + + FE GE+ L D +R FV + ESA AA++
Sbjct: 235 YIKNIDPDVTEEEFRKIFEQF-GEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVD 290
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 109 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 156
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 157 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 201
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 179
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A +
Sbjct: 180 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 231
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
Y N+D+++++ + + FE GE+ L D +R FV + +SA AA++
Sbjct: 232 YIKNLDQEISEEEFRQMFEKF-GEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFT--DEAEGARAALN 315
VY+ ++DQ+++EE+ +F G++ + D R F F+ ++ D A+ A +N
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMN 290
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 205
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A +
Sbjct: 184 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 235
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
Y NID++VT + + FE GE+ L D +R FV F +SA AA++
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFT--DEAEGARAALN 315
VY+ +IDQ+VT+E+ +F G++ + D R F F+ F+ D A+ A +N
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + + A+G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 205
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 300 FIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TI 357
F+ + + AE A A+ ML L K + + R EM A +
Sbjct: 184 FVHY-ETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 235
Query: 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
Y NID++VT + + FE GE+ L D +R FV F +SA AA++
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
Score = 35.4 bits (80), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFT--DEAEGARAALN 315
VY+ +IDQ+VT+E+ +F G++ + D R F F+ F+ D A+ A +N
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALNL 316
++Y D+D +VTE L LF VV R+C D N L +A+I F++ + RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 377 SVC--GEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN 413
+ G + ++ D S FV+F ESA AA++
Sbjct: 155 TFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAID 194
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 249 AQREEIIRR----------------TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP 292
++REE +RR +Y+ ++D V +E+L +F G V ++ +P
Sbjct: 308 SEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP 367
Query: 293 NSVLR-FAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
+ R F F+ +++ E RA + G M+G P+ +
Sbjct: 368 QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF GQV R+C D + L +A++ + D A G RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D + S FV + AE+A A+ + +G++L
Sbjct: 151 -AAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLL 195
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEAEGARAALNLA 317
+YV++ E + LF G VVD R N+ RF +++ E A AL L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDE-AHNALQLH 726
Query: 318 GTML-GFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376
+L YP++V S P+ T PR+ E R +Y TNID KV + DV+ FF
Sbjct: 727 KKLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVETFFR 778
Query: 377 SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430
G+V +R+ ++ +V + A AL+ +G LG+ + V SK
Sbjct: 779 DY-GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSK 831
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL 316
R +YV++ID +V E+ + F GQV RI N F ++ T + A AL+
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTN-QDAENALSA 815
Query: 317 AGTMLGFYPVRVLPS-------KTAIAPVNPTFLPRTEDERE-------------MCART 356
AG LG + V+ S KT ++ + L ++ + E + +++
Sbjct: 816 AGKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKS 875
Query: 357 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV-MAESAIAALNCS 415
+ TN+D V +A ++ FES G++YR+ L H A VEF+ + ++ A+L
Sbjct: 876 LGVTNVDGTVNEARLRSLFESY-GKLYRVVL----HPEHEGAVVEFLDIHDAGKASLALE 930
Query: 416 GVVLGSLPIRVS 427
G +G + ++
Sbjct: 931 GHEIGGRLLHIT 942
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 33/218 (15%)
Query: 227 AAVRRKKSFGQGKRRMNSRTSLAQ---REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV 283
AA+ +K+ GQ + Q REE+ TV V+++ ++E +L F CG +
Sbjct: 560 AALSKKRKPGQEGDVFKKSKPIEQHRNREEL---TVLVTNLPSDISENELKIFFKDCGNI 616
Query: 284 VDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFL 343
+ I D ++ A IEF++ +E A ++ G + T + N
Sbjct: 617 IRIFILEDNQKDVKVAQIEFSETSEVLAAKTRDLKSIRGHEISVQIHVDTNLYVTN---F 673
Query: 344 PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG-DYHHSTRIAFVEF 402
P T DE ++ KLF S G V +R Y+ + R +V+
Sbjct: 674 PPTYDELDI------------------TKLF--SAYGNVVDVRFPSLRYNTNRRFCYVQM 713
Query: 403 VMAESAIAALNCSGVVLGS-LPIRVSPSKTPVRPRAPR 439
+ A AL +L PI+V S P+R R PR
Sbjct: 714 RKPDEAHNALQLHKKLLEEKYPIQVFISD-PLR-RTPR 749
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ Q VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
+ S G + +++ D + S FV F E+A A++ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + +K F G ++++ D + ++ FV F E A A++
Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKY-GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 26/181 (14%)
Query: 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNH-NA 218
GD D R L+E+F K P S+ ++N GF GF + F H +A
Sbjct: 199 GDDMNDER-LKEMFGKYGPAL------SVKVMTDDNGKSKGF--GFVS-----FERHEDA 244
Query: 219 RNGNVNANAAVRRKKSF--GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQ 267
+ N KS G+ ++++ +T L ++ E +++ +YV ++D
Sbjct: 245 QKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR 327
+ +E+L F+ G + ++ + F F+ F+ E +A + G ++ P+
Sbjct: 305 IDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 328 V 328
V
Sbjct: 365 V 365
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+D VT+ QL F G VV R+C D L + ++ FT+ + ARA
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L L P+RV+ S R R A I+ N+D+ + + F
Sbjct: 97 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144
Query: 376 ESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
S G + ++ D S FV++ ESA A+ +G++L + V P
Sbjct: 145 SSF-GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEFTDEAEGARAALNLA 317
+YV ++D +++E+L +F G V ++ DPN + + F+ F E A L+
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379
Query: 318 GTMLGFYPVRV 328
G M+ P+ V
Sbjct: 380 GKMIESKPLYV 390
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
I ++YV D+ +V+E+ L +F G V + R+C D N+ L +A++ + + A+ RA
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
L T P+R + + +P+ R+ ++ N+DK + D K
Sbjct: 68 LDTLNNT-----PIRGKACRIMWSQRDPSL-------RKSGVGNVFIKNLDKGI---DHK 112
Query: 373 LFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 428
++ S G + +++ D +S++ FV + ESA A+ +G+++ + V P
Sbjct: 113 ALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGP 172
Query: 429 SKT 431
K+
Sbjct: 173 FKS 175
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 218 ARNGNVNANAAVRRKKSF--GQGKRRMNSRTSLAQREEIIRRTV--YVSDIDQQVTEEQL 273
A+N N N + K G+ ++++ L E + V Y+ +ID + ++L
Sbjct: 241 AKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKL 300
Query: 274 AALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
+F G + + D + F F+ +T E RA + G M+G P+ V
Sbjct: 301 REVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYV 357
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + ++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLL 163
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
+ F + E A+ A+N ML + K + F R E E E+ AR + T
Sbjct: 143 VHF-ETHEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFT 191
Query: 361 NIDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 412
NI K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 165 DMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNV- 223
D + LQ+LFS+ M K +N G + G F N F H V
Sbjct: 203 DEQGLQDLFSQFGKMLS-------VKVMRDNSGHSRCFG--FVN----FEKHEEAQKAVV 249
Query: 224 --NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQ 272
N R G+ ++R+ + L +R E +++ +YV ++D + +++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 273 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
L F G + ++ + F F+ F+ E +A + G ++G P+ V
Sbjct: 310 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 158 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 214
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 215 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 245
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 160 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 218
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 219 KESVRTSLALDESLFRGRQIKVIPKRT 245
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 243 NSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAF 300
NS SL + V+ + Q + + +L +LF G + CRI D + + F
Sbjct: 64 NSTNSLNSGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGF 123
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCT 360
++F EA+ RA NL G VR K + A P E R+ +Y T
Sbjct: 124 VDFGSEADALRAINNLNGIT-----VRNKRIKVSFA------RPGGEQLRDT---NLYVT 169
Query: 361 NIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHST--RIAFVEFVM---AESAIAALNCS 415
N+ + +T ++ F G++ + +L D H T +AF+ F A+ AI+ALN
Sbjct: 170 NLSRSITDEQLETIFGKY-GQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNV 228
Query: 416 GVVLGSLPIRVSPSKTPVRPR-----APRLPMH 443
G+ P+ V ++ + + AP P H
Sbjct: 229 IPEGGTQPLTVRVAEEHGKSKGHVYMAPNQPPH 261
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 348 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMA 405
D+ E+ +R++Y N+D K T + +F+S CG V R+ +L D H +VEFV
Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQS-CGTVNRITILSDKTTGHPKGCCYVEFVNK 152
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKT--PVRPRAPRLP 441
ES I A+ + ++++P +T P R LP
Sbjct: 153 ESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLP 190
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV-----VDCRICGDPNSVLRFAFIEF 303
+EEI R+VYV ++D + T +Q+ A F CG V + + G P ++EF
Sbjct: 93 TDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGC---CYVEF 149
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
++ E A+ L + +++ P +T +
Sbjct: 150 VNK-ESIINAMALNDSFFNERQLKITPKRTNL 180
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF G V R+C D + L +A++ + A+G +A
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+ A I+ N+D + + F
Sbjct: 121 LNYTLIKGRPCRIMWSQ------------RDPALRKTGAGNIFIKNLDAAIDNKALHDTF 168
Query: 376 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 419
+ G + ++ D H +++ FV + E+A A+ + +G++L
Sbjct: 169 -AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLL 213
Score = 36.2 bits (82), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
VYV +I+ +VT+E+ LF G+V + D R F F+ FT A+A L
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELN 302
Query: 318 G 318
G
Sbjct: 303 G 303
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 219 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 249
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVIPKRT 249
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 219 EFSDK-ESVRTSLALDESLFRGRQIKVIPKRT 249
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVIPKRT 249
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G V+ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S AFV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ V++ ++D+ + + L F G ++ C++ D N +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + +A + G +L V V F R E E E+ A+
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
+Y N ++V +K F S G+ ++++ D + ++ FV + E A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 25/176 (14%)
Query: 165 DMRELQELFSKL------------NPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLI 212
D L+ELFS+ N ++ F S K + N V NG + +I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK-II 261
Query: 213 FNNHNARNGNVNANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQ 272
F + V A ++RK F Q K+ SR +Y+ ++D + +E+
Sbjct: 262 FVGRAQKK--VERQAELKRK--FEQLKQERISRYQGV--------NLYIKNLDDTIDDEK 309
Query: 273 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
L F G + ++ + F F+ F+ E +A + G ++G P+ V
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+D+ + D K +
Sbjct: 72 MNFEVIKGRPIRIMWSQ------------RDPGLRKSGVGNVFIKNLDESI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLL 163
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/102 (18%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 236 GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ ++R+ + L ++ E I++ +YV ++D + +++L F G +
Sbjct: 264 GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSA 323
Query: 287 RICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
++ + F F+ F+ E +A + G ++ P+ V
Sbjct: 324 KVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 21/189 (11%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEF 303
T+ + E + ++YV D+D V+E L +F G V R+C D + L +A++ F
Sbjct: 24 TNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNF 83
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNID 363
D + A+ A+ L F P++ + + +P+ R+ A I+ N+
Sbjct: 84 NDH-DAAKTAIE----KLNFTPIKGKLCRIMWSQRDPSL-------RKKGAGNIFIKNLH 131
Query: 364 KKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVL 419
+ D K ++ SV G + ++ D ++ +V F ESA A++ +G++L
Sbjct: 132 PDI---DNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLL 188
Query: 420 GSLPIRVSP 428
I V P
Sbjct: 189 NGQEIYVGP 197
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++YV ++D VTE L LF G V R+C D + L +A++ F + +G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
L T++ P R++ S+ R R+M ++ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 376 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
S G++ ++ D ++ FV F ESA AA+ + +G++L
Sbjct: 189 -SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLL 233
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 419
+ S G + +++ D + S FV F E+A A++ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K +F G ++++ D H +R FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQY-GAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVD 249
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/102 (18%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 236 GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ ++++ +T L ++ E +++ +YV ++D + +E+L F G +
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSA 323
Query: 287 RICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
++ + F F+ F+ E +A + G ++ P+ V
Sbjct: 324 KVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 23/185 (12%)
Query: 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN 315
+T++V ++ V +EQ+ F G+VVD R + R F +EF AE A+ AL
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFAT-AEAAKKALE 507
Query: 316 LAGTMLGFYPVR--VLPSKTAIAPV----NPTFLPRTEDEREMCARTIYCTNIDKKVTQA 369
LAG L PVR + + A P N +F + + TI+ D T
Sbjct: 508 LAGHDLMGRPVRLDLARERGAYTPGSGRDNSSF----KKPAQSSGNTIFIKGFD---TSL 560
Query: 370 DVKLFFESV------CGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNCSGVVLGS 421
D+ S+ CGE+ R+ + DY S +A+++F S A +G LG
Sbjct: 561 DIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYELNGSDLGG 620
Query: 422 LPIRV 426
+ V
Sbjct: 621 YSLYV 625
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN 315
++Y+ D+ VTE L F G ++ R+C D + L +A+I F A+ RA
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ P+R++ S+ R R+ ++ N+D+ + D K +
Sbjct: 72 MNFEVIKGRPIRIMWSQ------------RDPGLRKSGVGNVFIKNLDESI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
+ S G + +++ D H S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLL 163
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/102 (18%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 236 GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ ++R+ ++ L ++ E I++ +YV ++D + +++L F+ G +
Sbjct: 264 GRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSA 323
Query: 287 RICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
++ + F F+ F+ E +A + G ++ P+ V
Sbjct: 324 KVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFIEFTD 305
+E I ++VYV ++D VT E+L + F CG V + C + G P FA+IEF+
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAYIEFS- 104
Query: 306 EAEGARAALNLAGTMLGFYPVRVLPSKTAI 335
E AL L G+ML P++V P +T +
Sbjct: 105 EPSLVPNALLLNGSMLHERPLKVTPKRTNV 134
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 348 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMA 405
D+ + A+++Y N+D VT +++ F S CG V R+ +L D H A++EF
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFAS-CGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
Query: 406 ESAIAALNCSGVVLGSLPIRVSPSKTPV 433
AL +G +L P++V+P +T V
Sbjct: 107 SLVPNALLLNGSMLHERPLKVTPKRTNV 134
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 27/182 (14%)
Query: 161 DFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNA 218
+F DM + L+ELF K P S+ + + GF GF + F H
Sbjct: 197 NFGEDMDDERLKELFGKFGPAL------SVKVMTDESGKSKGF--GFVS-----FERHED 243
Query: 219 RNGNV---NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQ 266
V N ++ G+ ++++ +T L ++ E +++ +YV ++D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
+ +E+L F G + ++ + F F+ F+ E +A + G ++ P+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 327 RV 328
V
Sbjct: 364 YV 365
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 27/182 (14%)
Query: 161 DFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNA 218
+F DM + L+ELF K P S+ + + GF GF + F H
Sbjct: 197 NFGEDMDDERLKELFGKFGPAL------SVKVMTDESGKSKGF--GFVS-----FERHED 243
Query: 219 RNGNV---NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQ 266
V N ++ G+ ++++ +T L ++ E +++ +YV ++D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
+ +E+L F G + ++ + F F+ F+ E +A + G ++ P+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 327 RV 328
V
Sbjct: 364 YV 365
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 74/182 (40%), Gaps = 27/182 (14%)
Query: 161 DFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNA 218
+F DM + L++LF K P S+ + + GF GF + F H
Sbjct: 197 NFGEDMDDERLKDLFGKFGPAL------SVKVMTDESGKSKGF--GFVS-----FERHED 243
Query: 219 RNGNV---NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQ 266
V N ++ G+ ++++ +T L ++ E +++ +YV ++D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
+ +E+L F G + ++ + F F+ F+ E +A + G ++ P+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 327 RV 328
V
Sbjct: 364 YV 365
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ VTE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 74/182 (40%), Gaps = 27/182 (14%)
Query: 161 DFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNA 218
+F DM + L++LF K P S+ + + GF GF + F H
Sbjct: 197 NFGEDMDDERLKDLFGKFGPAL------SVKVMTDESGKSKGF--GFVS-----FERHED 243
Query: 219 RNGNV---NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQ 266
V N ++ G+ ++++ +T L ++ E +++ +YV ++D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
+ +E+L F G + ++ + F F+ F+ E +A + G ++ P+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 327 RV 328
V
Sbjct: 364 YV 365
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAG 318
+++ ++D++ +L ALF G VV+C + V + F+ E +G A NL G
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDV------VKNYGFVHMETEQQGRDAIQNLNG 62
Query: 319 TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESV 378
L + ++V +K+ AP PT I+ N+ K +V+ F+
Sbjct: 63 YTLNEFAIKVEAAKSRRAPNTPT-------------TKIFVGNLTDKTRAPEVRELFQKY 109
Query: 379 CGEVYRLRLLGDYHHSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKTPVRP 435
G V ++ +Y FV + AI LN G V+ P++V S + VRP
Sbjct: 110 -GTVVECDIVRNY------GFVHLDCVGDVQDAIKELN--GRVVDGQPLKVQVSTSRVRP 160
Query: 436 R 436
+
Sbjct: 161 K 161
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 246 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEF 303
T+ AQ+ ++YV ++D VTE L LF GQV R+C D + L +A++ +
Sbjct: 37 TTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 96
Query: 304 TDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNID 363
+G +A L T++ P R++ S+ +P R+ ++ N+D
Sbjct: 97 NSSEDGEKALEELNYTVIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLD 144
Query: 364 KKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ + F + G + ++ D +S FV + AE+A A+ + +G++L
Sbjct: 145 HAIDNKALHDTF-AAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLL 201
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 299
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYG 179
Query: 300 FIEFTDEAEGARAAL-NLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRTEDEREMCAR 355
F+ + + AE A A+ ++ G +L V V +P K R EM A
Sbjct: 180 FVHY-ETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKE-----------RMSKFEEMKAN 227
Query: 356 --TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL 412
IY NID VT D + FE G++ + D +R FV ++ E+A A+
Sbjct: 228 FTNIYVKNIDLDVTDEDFRELFEK-HGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAV 286
Query: 413 N 413
+
Sbjct: 287 D 287
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 152 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 208
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 209 EFSDK-ESVRTSLALDESLFRGRQIKVVPKRT 239
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 154 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFTGHPKGFAYIEFSD 212
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 213 KESVRTSLALDESLFRGRQIKVVPKRT 239
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 20/176 (11%)
Query: 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDE 306
A R E ++Y+ D+ VTE L F G ++ R+C D + L +A+I F
Sbjct: 3 ATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 307 AEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV 366
A+ RA + ++ P+R++ S+ R R+ ++ N+D +
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQ------------RDPGLRKSGVGNVFIKNLDDSI 110
Query: 367 TQADVKLFFE--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 419
D K ++ S G++ +++ D + S FV F E+A A+ +G++L
Sbjct: 111 ---DNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLL 163
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/102 (18%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 236 GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQLAALFVGCGQVVDC 286
G+ ++R+ + L ++ E I++ +YV ++D + +++L F G +
Sbjct: 264 GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITST 323
Query: 287 RICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
++ + F F+ F+ E +A + G ++ P+ V
Sbjct: 324 KVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 301
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 153 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYI 209
Query: 302 EFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333
EF+D+ E R +L L ++ ++V+P +T
Sbjct: 210 EFSDK-ESVRTSLALDESLFRGRQIKVVPKRT 240
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 404
E++ E AR+IY N+D T +++ F CG V R+ +L D + H A++EF
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKYTGHPKGFAYIEFSD 213
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKT 431
ES +L + I+V P +T
Sbjct: 214 KESVRTSLALDESLFRGRQIKVVPKRT 240
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NS 294
Q ++ + S +Q E ++YV D++ V+E L +F G V R+C D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 295 VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCA 354
L +A++ F D G +A L + P++ + + +P+ R+ +
Sbjct: 78 SLGYAYVNFNDHEAGRKAI-----EQLNYTPIKGRLCRIMWSQRDPSL-------RKKGS 125
Query: 355 RTIYCTNIDKKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR----IAFVEFVMAESA 408
I+ N+ + D K ++ SV G++ ++ D + ++ + F E A+ A
Sbjct: 126 GNIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEA 182
Query: 409 IAALNCSGVVLGSLPIRVSP 428
I ALN G++L I V+P
Sbjct: 183 IDALN--GMLLNGQEIYVAP 200
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 29/211 (13%)
Query: 241 RMNSRTSLAQREEIIRR----TVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSV 295
++N + RE+ I + +++V D+ V E + +LF +I DP +
Sbjct: 166 KLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTN 225
Query: 296 LR--FAFIEFTDEAEGARAALNLAGTMLGFYPVRV---LPSKTA--IAPVN--PTFLP-- 344
+ + F+ FTDE + A + G + G P+RV P A +PVN P +P
Sbjct: 226 VSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPV 285
Query: 345 -------RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI 397
+ T++ + K V++ ++K F++ GE+ +++
Sbjct: 286 GFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNF-GEIVYVKI----PPGKGC 340
Query: 398 AFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427
FV+FV +SA A+N G LG+ IR+S
Sbjct: 341 GFVQFVNRQSAEIAINQLQGYPLGNSRIRLS 371
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 241 RMN--SRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDP 292
R+N S +S +R++ T++V D+ VT+ L F V +VV R+ G
Sbjct: 137 RLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTG-- 194
Query: 293 NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP--SKTAIAPVNPTF---LPRTE 347
+ F+ F+DE+E RA + G P+R+ P SK + ++
Sbjct: 195 -RTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVT 253
Query: 348 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VM 404
+ + T++ +D VT +K F S GE+ +++ R FV+F
Sbjct: 254 TDNDPNNTTVFVGGLDASVTDDHLKNVF-SQYGEIVHVKIPA----GKRCGFVQFSEKSC 308
Query: 405 AESAIAALNCSGVVLGSLPIRVSPSKTP 432
AE A+ LN GV LG +R+S ++P
Sbjct: 309 AEEALRMLN--GVQLGGTTVRLSWGRSP 334
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 228 AVRRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCR 287
A +K GQ +S + + TV+V +D VT++ L +F G++V +
Sbjct: 232 AASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVK 291
Query: 288 ICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328
I + R F++F++++ A L G LG VR+
Sbjct: 292 I----PAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRL 328
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV ++D VTE L +F G V R+C D + L +A++ + + A+G RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
+L +++ R++ S+ R R+ I+ N+D+ + +
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQ------------RDPALRKTGQGNIFIKNLDQSIDNKALH 151
Query: 373 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVL 419
F + G++ ++ D + +R AFV + E+A AA+ +G++L
Sbjct: 152 DTF-AAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLL 199
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T +++ ++DQ + + L F G ++ C++ D N R FA
Sbjct: 118 RIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFA 177
Query: 300 FIEFTDEAEGARAALNLAGTML 321
F+ ++ E A AA+ ML
Sbjct: 178 FVHYST-GEAADAAIKAVNGML 198
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
+YV ++D + +++L A F G + ++ D + V R F F+ ++ E +A +
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMN 391
Query: 318 GTMLGFYPVRV 328
G M+G P+ V
Sbjct: 392 GKMIGTKPLYV 402
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARA 312
+ ++YV ++D VTE L +F G V R+C D + L +A++ + + A+G RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 313 ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 372
+L +++ R++ S+ R R+ I+ N+D+ + +
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQ------------RDPALRKTGQGNIFIKNLDQSIDNKALH 151
Query: 373 LFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVL 419
F + G++ ++ D + +R AFV + E+A AA+ +G++L
Sbjct: 152 DTF-AAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLL 199
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 299
R +QR+ +R+T +++ ++DQ + + L F G ++ C++ D N R FA
Sbjct: 118 RIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFA 177
Query: 300 FIEFTDEAEGARAALNLAGTML 321
F+ ++ E A AA+ ML
Sbjct: 178 FVHYST-GEAADAAIKAVNGML 198
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALNLA 317
+YV ++D + +++L A F G + ++ D + V R F F+ ++ E +A +
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMN 391
Query: 318 GTMLGFYPVRV 328
G M+G P+ V
Sbjct: 392 GKMIGTKPLYV 402
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 20/167 (11%)
Query: 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEAEGARAALN 315
++YV D+ TE L F G ++ R+C D L +A++ F A+ RA
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 316 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 376 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL-NCSGVVL 419
+ S G + +++ D + S FV F E+A A+ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 245 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 300
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 301 IEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 356
+ F + RA + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 357 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 413
+Y N + + +K F G ++++ D ++ FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKF-GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 74/182 (40%), Gaps = 27/182 (14%)
Query: 161 DFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNA 218
+F DM + L++LF K P S+ + + GF GF + F H
Sbjct: 197 NFGEDMDDERLKDLFGKFGPAL------SVKVMTDESGKSKGF--GFVS-----FERHED 243
Query: 219 RNGNV---NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQ 266
V N ++ G+ ++++ +T L ++ E +++ +YV ++D
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326
+ +E+L F G + ++ + F F+ F+ E +A + G ++ P+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 327 RV 328
V
Sbjct: 364 YV 365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,862,716
Number of Sequences: 539616
Number of extensions: 6602023
Number of successful extensions: 47199
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 444
Number of HSP's that attempted gapping in prelim test: 28584
Number of HSP's gapped (non-prelim): 11912
length of query: 443
length of database: 191,569,459
effective HSP length: 121
effective length of query: 322
effective length of database: 126,275,923
effective search space: 40660847206
effective search space used: 40660847206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)