Query 013446
Match_columns 443
No_of_seqs 303 out of 1884
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:56:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0110 RNA-binding protein (R 100.0 1.2E-40 2.7E-45 350.1 14.8 322 104-432 322-693 (725)
2 TIGR01659 sex-lethal sex-letha 100.0 2.3E-28 4.9E-33 248.8 25.0 166 251-432 102-275 (346)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9.7E-29 2.1E-33 250.3 19.0 252 160-431 11-348 (352)
4 TIGR01645 half-pint poly-U bin 99.9 7.3E-27 1.6E-31 250.6 20.9 173 255-432 106-284 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.6E-26 3.5E-31 234.1 19.8 163 255-433 2-172 (352)
6 TIGR01622 SF-CC1 splicing fact 99.9 7.1E-26 1.5E-30 237.6 22.2 175 253-431 86-265 (457)
7 KOG0148 Apoptosis-promoting RN 99.9 1.4E-25 3E-30 214.5 16.1 171 256-434 62-240 (321)
8 TIGR01628 PABP-1234 polyadenyl 99.9 3E-25 6.6E-30 239.2 19.1 161 257-431 1-166 (562)
9 TIGR01628 PABP-1234 polyadenyl 99.9 2.2E-25 4.7E-30 240.3 17.4 245 159-432 7-261 (562)
10 KOG0144 RNA-binding protein CU 99.9 4.1E-25 9E-30 222.1 13.0 169 249-432 27-206 (510)
11 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.8E-23 4E-28 222.1 21.9 174 252-431 171-374 (509)
12 TIGR01648 hnRNP-R-Q heterogene 99.9 2.8E-23 6E-28 222.6 21.7 175 253-435 55-310 (578)
13 KOG0117 Heterogeneous nuclear 99.9 1.1E-23 2.3E-28 212.9 17.3 179 253-439 80-338 (506)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.5E-23 5.5E-28 220.8 20.9 174 254-432 273-480 (481)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 8.7E-23 1.9E-27 216.9 22.7 176 254-431 293-501 (509)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.9E-23 1.5E-27 217.4 20.5 167 255-431 1-173 (481)
17 KOG0145 RNA-binding protein EL 99.9 2.3E-23 5.1E-28 198.3 11.9 169 253-437 38-214 (360)
18 TIGR01622 SF-CC1 splicing fact 99.9 1E-21 2.2E-26 206.2 21.3 172 256-431 186-447 (457)
19 KOG0131 Splicing factor 3b, su 99.9 9.3E-23 2E-27 185.6 10.9 161 255-430 8-175 (203)
20 KOG0127 Nucleolar protein fibr 99.9 9.8E-22 2.1E-26 202.5 16.3 174 256-431 5-195 (678)
21 KOG0127 Nucleolar protein fibr 99.9 1.3E-20 2.9E-25 194.1 21.0 174 255-430 116-376 (678)
22 KOG0123 Polyadenylate-binding 99.9 7.4E-21 1.6E-25 195.1 15.8 149 257-431 2-152 (369)
23 KOG0145 RNA-binding protein EL 99.8 2.1E-20 4.5E-25 178.2 16.0 248 160-430 49-356 (360)
24 KOG0109 RNA-binding protein LA 99.8 1E-20 2.2E-25 182.9 10.6 149 257-435 3-153 (346)
25 KOG0124 Polypyrimidine tract-b 99.8 7.7E-20 1.7E-24 181.0 10.7 170 256-432 113-290 (544)
26 KOG0144 RNA-binding protein CU 99.8 4.4E-19 9.5E-24 179.0 10.8 258 160-434 42-506 (510)
27 TIGR01645 half-pint poly-U bin 99.8 1.2E-17 2.6E-22 179.9 22.0 161 159-332 114-282 (612)
28 KOG0123 Polyadenylate-binding 99.8 1.8E-18 3.9E-23 177.5 15.1 233 163-431 9-245 (369)
29 KOG0147 Transcriptional coacti 99.8 1.1E-18 2.4E-23 180.7 7.7 177 250-429 173-355 (549)
30 KOG0146 RNA-binding protein ET 99.8 4.2E-18 9.1E-23 163.1 10.8 185 249-435 12-368 (371)
31 KOG0148 Apoptosis-promoting RN 99.7 5.8E-18 1.3E-22 162.5 10.7 133 255-430 5-140 (321)
32 KOG4205 RNA-binding protein mu 99.7 1E-17 2.2E-22 167.5 11.1 167 255-431 5-175 (311)
33 KOG0105 Alternative splicing f 99.6 1.3E-14 2.9E-19 132.8 14.4 156 255-419 5-175 (241)
34 KOG4206 Spliceosomal protein s 99.6 3.7E-14 8E-19 133.8 15.8 168 257-430 10-220 (221)
35 KOG1548 Transcription elongati 99.6 1.1E-13 2.5E-18 137.0 18.3 179 248-430 126-350 (382)
36 PLN03134 glycine-rich RNA-bind 99.6 2.2E-14 4.7E-19 129.3 11.8 79 353-432 33-114 (144)
37 KOG4211 Splicing factor hnRNP- 99.5 1.6E-13 3.4E-18 141.2 15.8 169 254-429 8-179 (510)
38 KOG0110 RNA-binding protein (R 99.5 1.4E-13 3.1E-18 146.5 14.4 171 253-430 382-596 (725)
39 KOG0147 Transcriptional coacti 99.5 1.8E-13 3.9E-18 142.4 12.2 167 258-429 280-525 (549)
40 TIGR01659 sex-lethal sex-letha 99.5 1.2E-13 2.5E-18 141.2 10.0 156 160-334 115-275 (346)
41 PLN03134 glycine-rich RNA-bind 99.5 2.2E-13 4.8E-18 122.7 10.4 78 255-333 33-113 (144)
42 KOG0122 Translation initiation 99.5 4.8E-13 1E-17 127.3 11.8 79 353-432 188-269 (270)
43 PF00076 RRM_1: RNA recognitio 99.4 7.5E-13 1.6E-17 102.3 9.5 68 357-425 1-70 (70)
44 PF00076 RRM_1: RNA recognitio 99.4 8.3E-13 1.8E-17 102.0 8.3 68 259-327 1-70 (70)
45 KOG0106 Alternative splicing f 99.4 3.3E-13 7.1E-18 128.2 7.1 159 257-429 2-168 (216)
46 COG0724 RNA-binding proteins ( 99.4 3E-12 6.4E-17 120.9 13.6 156 256-413 115-285 (306)
47 KOG4212 RNA-binding protein hn 99.4 4E-12 8.8E-17 129.0 15.1 173 255-429 43-291 (608)
48 KOG1190 Polypyrimidine tract-b 99.4 7.1E-12 1.5E-16 126.5 15.6 169 256-432 297-491 (492)
49 KOG0121 Nuclear cap-binding pr 99.4 9.8E-13 2.1E-17 114.3 6.2 80 251-331 31-113 (153)
50 PLN03120 nucleic acid binding 99.4 3.3E-12 7.2E-17 124.3 10.3 79 255-335 3-81 (260)
51 PLN03120 nucleic acid binding 99.3 5.6E-12 1.2E-16 122.8 11.4 76 354-431 4-79 (260)
52 KOG0124 Polypyrimidine tract-b 99.3 2.7E-11 5.8E-16 120.8 15.8 259 160-430 121-533 (544)
53 PF14259 RRM_6: RNA recognitio 99.3 8.5E-12 1.8E-16 97.4 9.6 68 357-425 1-70 (70)
54 KOG1457 RNA binding protein (c 99.3 2.1E-11 4.5E-16 114.9 13.0 163 253-419 31-273 (284)
55 KOG0125 Ataxin 2-binding prote 99.3 5.6E-12 1.2E-16 124.3 9.5 100 317-431 73-173 (376)
56 PLN03121 nucleic acid binding 99.3 1.5E-11 3.2E-16 118.2 10.2 82 255-338 4-85 (243)
57 smart00362 RRM_2 RNA recogniti 99.3 4.1E-11 8.8E-16 91.1 9.6 71 356-427 1-72 (72)
58 TIGR01648 hnRNP-R-Q heterogene 99.2 3.6E-11 7.9E-16 129.7 11.7 113 308-430 20-136 (578)
59 smart00362 RRM_2 RNA recogniti 99.2 5.8E-11 1.3E-15 90.3 8.7 71 258-329 1-72 (72)
60 PF14259 RRM_6: RNA recognitio 99.2 4.7E-11 1E-15 93.1 8.0 68 259-327 1-70 (70)
61 KOG0121 Nuclear cap-binding pr 99.2 2.3E-11 4.9E-16 105.8 6.5 78 351-429 33-113 (153)
62 KOG1456 Heterogeneous nuclear 99.2 3.9E-10 8.5E-15 112.9 15.8 164 253-432 28-199 (494)
63 KOG0131 Splicing factor 3b, su 99.2 1.1E-11 2.5E-16 113.5 4.4 156 160-333 17-176 (203)
64 KOG0107 Alternative splicing f 99.2 2.9E-11 6.2E-16 110.3 6.9 75 256-334 10-85 (195)
65 PLN03121 nucleic acid binding 99.2 1E-10 2.2E-15 112.5 11.1 75 354-430 5-79 (243)
66 PLN03213 repressor of silencin 99.2 5E-11 1.1E-15 122.7 9.4 78 352-432 8-88 (759)
67 KOG0120 Splicing factor U2AF, 99.2 1.3E-10 2.8E-15 122.3 12.6 176 254-431 287-491 (500)
68 KOG0149 Predicted RNA-binding 99.2 5E-11 1.1E-15 113.2 7.4 78 255-333 11-90 (247)
69 KOG0129 Predicted RNA-binding 99.2 4.1E-10 8.8E-15 117.0 14.3 155 252-413 255-431 (520)
70 KOG0111 Cyclophilin-type pepti 99.2 2.6E-11 5.6E-16 114.0 4.8 81 354-435 10-93 (298)
71 KOG0125 Ataxin 2-binding prote 99.1 1.2E-10 2.7E-15 115.0 9.0 78 255-333 95-173 (376)
72 smart00360 RRM RNA recognition 99.1 2.7E-10 5.9E-15 86.1 8.6 68 359-427 1-71 (71)
73 KOG0107 Alternative splicing f 99.1 1E-10 2.2E-15 106.7 7.1 75 353-431 9-84 (195)
74 cd00590 RRM RRM (RNA recogniti 99.1 5.8E-10 1.3E-14 85.1 10.0 72 356-428 1-74 (74)
75 KOG1190 Polypyrimidine tract-b 99.1 1.1E-09 2.5E-14 110.8 14.5 168 255-430 149-371 (492)
76 COG0724 RNA-binding proteins ( 99.1 4.4E-10 9.6E-15 106.0 10.5 77 354-431 115-194 (306)
77 KOG0122 Translation initiation 99.1 3.9E-10 8.4E-15 107.7 9.9 77 255-332 188-267 (270)
78 PLN03213 repressor of silencin 99.1 2.4E-10 5.2E-15 117.8 9.1 80 252-333 6-87 (759)
79 KOG0120 Splicing factor U2AF, 99.1 2.2E-10 4.7E-15 120.6 8.9 171 254-430 173-367 (500)
80 KOG4207 Predicted splicing fac 99.1 1.8E-10 3.9E-15 107.6 7.0 78 352-430 11-91 (256)
81 KOG0114 Predicted RNA-binding 99.1 4.3E-10 9.2E-15 94.7 8.4 78 352-431 16-94 (124)
82 KOG0126 Predicted RNA-binding 99.1 1.9E-11 4.1E-16 112.0 0.3 75 354-429 35-112 (219)
83 KOG1456 Heterogeneous nuclear 99.1 1.2E-08 2.5E-13 102.5 20.0 174 253-431 284-490 (494)
84 KOG0149 Predicted RNA-binding 99.1 3.7E-10 8E-15 107.4 8.4 78 353-431 11-90 (247)
85 PF13893 RRM_5: RNA recognitio 99.1 9.1E-10 2E-14 82.7 8.4 55 371-429 1-56 (56)
86 KOG0130 RNA-binding protein RB 99.0 5.5E-10 1.2E-14 98.1 7.4 77 352-429 70-149 (170)
87 KOG0113 U1 small nuclear ribon 99.0 6.3E-10 1.4E-14 108.8 8.6 79 253-332 98-179 (335)
88 cd00590 RRM RRM (RNA recogniti 99.0 1.5E-09 3.2E-14 82.9 8.9 72 258-330 1-74 (74)
89 smart00360 RRM RNA recognition 99.0 1.1E-09 2.3E-14 82.8 7.7 68 261-329 1-71 (71)
90 KOG0113 U1 small nuclear ribon 99.0 9.6E-10 2.1E-14 107.6 8.9 79 352-431 99-180 (335)
91 KOG4207 Predicted splicing fac 99.0 5.6E-10 1.2E-14 104.3 6.4 79 255-334 12-93 (256)
92 KOG0114 Predicted RNA-binding 99.0 2E-09 4.4E-14 90.6 8.9 77 253-331 15-92 (124)
93 KOG0126 Predicted RNA-binding 99.0 8.9E-11 1.9E-15 107.7 0.2 83 254-337 33-118 (219)
94 KOG1365 RNA-binding protein Fu 98.9 2.6E-09 5.6E-14 107.5 9.0 172 256-429 161-359 (508)
95 KOG0108 mRNA cleavage and poly 98.9 2E-09 4.3E-14 112.5 7.6 76 355-431 19-97 (435)
96 KOG0112 Large RNA-binding prot 98.9 8.4E-10 1.8E-14 120.5 4.5 164 252-437 368-536 (975)
97 smart00361 RRM_1 RNA recogniti 98.9 7.7E-09 1.7E-13 81.5 8.2 59 368-427 2-70 (70)
98 KOG0117 Heterogeneous nuclear 98.9 1.2E-08 2.5E-13 104.6 11.6 113 308-430 45-162 (506)
99 KOG0105 Alternative splicing f 98.9 2.7E-09 5.9E-14 98.2 6.3 78 353-432 5-83 (241)
100 KOG0108 mRNA cleavage and poly 98.9 4.3E-09 9.4E-14 110.0 7.6 76 257-333 19-97 (435)
101 PF13893 RRM_5: RNA recognitio 98.8 1.2E-08 2.7E-13 76.5 6.4 55 273-331 1-56 (56)
102 KOG0111 Cyclophilin-type pepti 98.8 3.5E-09 7.6E-14 99.8 4.0 79 254-333 8-89 (298)
103 KOG0146 RNA-binding protein ET 98.8 9.5E-09 2.1E-13 99.3 6.5 96 323-433 2-102 (371)
104 KOG0130 RNA-binding protein RB 98.8 8.4E-09 1.8E-13 90.7 5.4 77 254-331 70-149 (170)
105 KOG4454 RNA binding protein (R 98.7 2.3E-09 4.9E-14 101.0 1.0 130 255-413 8-143 (267)
106 KOG0109 RNA-binding protein LA 98.7 2.8E-08 6.1E-13 97.2 6.8 71 355-432 3-74 (346)
107 KOG4206 Spliceosomal protein s 98.7 3.6E-08 7.8E-13 93.5 7.1 76 355-432 10-90 (221)
108 smart00361 RRM_1 RNA recogniti 98.7 5.8E-08 1.3E-12 76.5 7.1 58 270-328 2-69 (70)
109 KOG4212 RNA-binding protein hn 98.7 4E-08 8.6E-13 100.4 7.6 75 355-429 45-121 (608)
110 KOG0153 Predicted RNA-binding 98.7 5.9E-08 1.3E-12 96.9 7.9 76 351-431 225-302 (377)
111 KOG4210 Nuclear localization s 98.6 2.8E-08 6E-13 99.2 5.3 172 254-432 86-264 (285)
112 KOG0132 RNA polymerase II C-te 98.6 7.1E-08 1.5E-12 104.3 7.3 76 351-431 418-494 (894)
113 KOG4205 RNA-binding protein mu 98.6 2E-07 4.4E-12 93.8 9.1 157 157-332 11-174 (311)
114 KOG0153 Predicted RNA-binding 98.6 1.1E-07 2.5E-12 94.9 7.0 79 250-333 222-302 (377)
115 KOG0226 RNA-binding proteins [ 98.6 6E-08 1.3E-12 93.4 4.6 165 255-429 95-267 (290)
116 KOG4211 Splicing factor hnRNP- 98.5 9.1E-07 2E-11 92.0 12.3 172 254-428 101-354 (510)
117 KOG0128 RNA-binding protein SA 98.5 1.7E-08 3.7E-13 110.1 -1.3 145 255-431 666-814 (881)
118 KOG0415 Predicted peptidyl pro 98.4 2.3E-07 5E-12 92.9 5.7 77 255-332 238-317 (479)
119 KOG0132 RNA polymerase II C-te 98.4 4.7E-07 1E-11 98.1 8.1 74 254-332 419-493 (894)
120 KOG0415 Predicted peptidyl pro 98.4 3.7E-07 8E-12 91.4 6.0 79 353-432 238-319 (479)
121 KOG4208 Nucleolar RNA-binding 98.4 9.9E-07 2.1E-11 82.8 7.2 79 352-430 47-128 (214)
122 KOG4208 Nucleolar RNA-binding 98.3 1.2E-06 2.6E-11 82.2 7.2 79 252-331 45-127 (214)
123 KOG0533 RRM motif-containing p 98.3 2.1E-06 4.4E-11 83.6 8.1 79 353-432 82-162 (243)
124 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.7E-06 3.7E-11 91.0 7.8 82 350-432 401-485 (940)
125 PF04059 RRM_2: RNA recognitio 98.3 5E-06 1.1E-10 70.1 8.8 76 355-430 2-85 (97)
126 KOG0151 Predicted splicing reg 98.2 6.7E-06 1.5E-10 88.6 10.9 84 253-337 171-260 (877)
127 KOG0226 RNA-binding proteins [ 98.2 1.3E-06 2.7E-11 84.4 4.8 80 252-332 186-268 (290)
128 KOG4660 Protein Mei2, essentia 98.2 2.2E-06 4.8E-11 90.3 6.9 169 252-431 71-249 (549)
129 KOG1365 RNA-binding protein Fu 98.2 9E-06 2E-10 82.4 10.3 166 255-425 59-236 (508)
130 KOG4676 Splicing factor, argin 98.2 6E-07 1.3E-11 90.9 1.8 162 257-422 8-216 (479)
131 KOG0151 Predicted splicing reg 98.2 4.5E-06 9.8E-11 89.9 8.1 84 347-431 167-256 (877)
132 KOG4209 Splicing factor RNPS1, 98.1 3.4E-06 7.5E-11 81.8 6.1 82 350-432 97-180 (231)
133 KOG4209 Splicing factor RNPS1, 98.1 3.7E-06 8.1E-11 81.6 5.4 82 252-334 97-180 (231)
134 KOG4661 Hsp27-ERE-TATA-binding 98.1 9E-06 2E-10 85.7 7.5 81 253-334 402-485 (940)
135 KOG0533 RRM motif-containing p 98.0 1.2E-05 2.6E-10 78.4 7.7 78 253-331 80-159 (243)
136 KOG0116 RasGAP SH3 binding pro 98.0 8.8E-06 1.9E-10 85.0 7.2 76 355-431 289-366 (419)
137 KOG0116 RasGAP SH3 binding pro 98.0 8.2E-06 1.8E-10 85.3 6.4 76 255-331 287-364 (419)
138 KOG0106 Alternative splicing f 98.0 8.2E-06 1.8E-10 78.0 5.3 70 355-431 2-72 (216)
139 KOG4660 Protein Mei2, essentia 98.0 5.8E-06 1.3E-10 87.2 4.2 77 345-425 66-143 (549)
140 KOG1457 RNA binding protein (c 97.9 3.9E-05 8.4E-10 73.1 8.9 79 353-432 33-118 (284)
141 KOG2193 IGF-II mRNA-binding pr 97.9 1.1E-06 2.5E-11 89.7 -1.7 148 257-429 2-154 (584)
142 KOG1548 Transcription elongati 97.9 2.4E-05 5.1E-10 78.6 7.4 77 353-430 133-219 (382)
143 KOG4454 RNA binding protein (R 97.9 5.1E-06 1.1E-10 78.7 2.5 74 354-429 9-84 (267)
144 PF04059 RRM_2: RNA recognitio 97.7 0.00015 3.3E-09 61.2 8.1 76 256-332 1-85 (97)
145 KOG4307 RNA binding protein RB 97.7 0.0001 2.2E-09 79.7 7.8 172 255-428 310-510 (944)
146 PF08777 RRM_3: RNA binding mo 97.2 0.0012 2.6E-08 56.5 6.8 68 355-427 2-75 (105)
147 PF11608 Limkain-b1: Limkain b 97.1 0.002 4.2E-08 52.9 7.4 66 355-429 3-74 (90)
148 KOG4307 RNA binding protein RB 97.1 0.0071 1.5E-07 65.8 13.4 72 257-329 868-942 (944)
149 PF08777 RRM_3: RNA binding mo 97.1 0.0017 3.8E-08 55.5 7.0 54 257-315 2-55 (105)
150 PF11608 Limkain-b1: Limkain b 97.0 0.0036 7.9E-08 51.3 7.7 67 257-332 3-75 (90)
151 KOG0128 RNA-binding protein SA 96.7 0.00019 4.2E-09 79.1 -2.2 156 255-416 570-730 (881)
152 KOG4210 Nuclear localization s 96.6 0.0019 4.1E-08 64.7 4.4 76 256-332 184-262 (285)
153 KOG1995 Conserved Zn-finger pr 96.6 0.0018 3.9E-08 65.6 3.8 78 352-430 64-152 (351)
154 KOG1995 Conserved Zn-finger pr 96.5 0.0026 5.6E-08 64.5 4.2 79 253-332 63-152 (351)
155 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.021 4.6E-07 48.5 7.5 77 354-432 6-92 (100)
156 COG5175 MOT2 Transcriptional r 96.2 0.01 2.3E-07 59.8 6.4 75 355-430 115-201 (480)
157 PF14605 Nup35_RRM_2: Nup53/35 96.1 0.014 3E-07 43.8 5.4 52 355-412 2-53 (53)
158 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.018 3.9E-07 49.0 6.7 75 255-331 5-89 (100)
159 KOG0115 RNA-binding protein p5 96.1 0.0091 2E-07 58.2 5.3 99 310-430 7-112 (275)
160 PF14605 Nup35_RRM_2: Nup53/35 96.0 0.017 3.6E-07 43.3 5.4 52 257-314 2-53 (53)
161 KOG1855 Predicted RNA-binding 96.0 0.0088 1.9E-07 62.0 5.2 64 352-416 229-308 (484)
162 KOG1996 mRNA splicing factor [ 96.0 0.018 3.8E-07 57.2 6.8 62 368-430 300-365 (378)
163 KOG2314 Translation initiation 96.0 0.013 2.8E-07 62.6 6.2 75 352-427 56-139 (698)
164 KOG1855 Predicted RNA-binding 95.7 0.011 2.4E-07 61.3 4.3 66 251-317 226-306 (484)
165 PF08952 DUF1866: Domain of un 95.4 0.059 1.3E-06 48.7 7.5 54 370-430 52-105 (146)
166 COG5175 MOT2 Transcriptional r 95.4 0.033 7.2E-07 56.3 6.3 78 255-333 113-202 (480)
167 KOG2202 U2 snRNP splicing fact 95.4 0.0068 1.5E-07 59.1 1.4 62 369-430 83-146 (260)
168 KOG3152 TBP-binding protein, a 95.3 0.011 2.4E-07 57.7 2.5 70 353-423 73-157 (278)
169 KOG0129 Predicted RNA-binding 95.2 0.055 1.2E-06 57.4 7.5 62 254-316 368-432 (520)
170 PF08952 DUF1866: Domain of un 95.0 0.088 1.9E-06 47.6 7.3 70 255-331 26-104 (146)
171 KOG4849 mRNA cleavage factor I 94.9 0.023 5E-07 57.6 3.5 73 256-329 80-157 (498)
172 KOG4676 Splicing factor, argin 94.8 0.044 9.5E-07 56.4 5.4 74 355-429 8-86 (479)
173 KOG2314 Translation initiation 94.4 0.084 1.8E-06 56.6 6.5 77 253-330 55-140 (698)
174 KOG3152 TBP-binding protein, a 94.1 0.032 7E-07 54.5 2.5 70 255-325 73-157 (278)
175 KOG2416 Acinus (induces apopto 94.1 0.04 8.6E-07 59.3 3.4 76 350-429 440-519 (718)
176 KOG2202 U2 snRNP splicing fact 93.3 0.039 8.4E-07 53.9 1.5 52 279-331 92-145 (260)
177 KOG0112 Large RNA-binding prot 93.2 0.15 3.3E-06 57.3 6.1 76 254-334 453-531 (975)
178 KOG1996 mRNA splicing factor [ 92.8 0.23 5E-06 49.5 6.0 61 270-331 300-364 (378)
179 KOG4849 mRNA cleavage factor I 92.6 0.12 2.6E-06 52.6 3.8 78 352-430 78-161 (498)
180 KOG2193 IGF-II mRNA-binding pr 92.2 0.1 2.2E-06 54.3 2.7 69 355-430 2-74 (584)
181 PF07576 BRAP2: BRCA1-associat 91.8 1.1 2.3E-05 38.8 8.3 67 355-421 14-81 (110)
182 PF08675 RNA_bind: RNA binding 91.4 1.2 2.5E-05 36.8 7.5 53 255-315 8-60 (87)
183 PF08675 RNA_bind: RNA binding 90.6 1.1 2.4E-05 36.9 6.7 51 355-413 10-60 (87)
184 KOG2135 Proteins containing th 90.1 0.18 3.9E-06 53.2 2.3 73 255-332 371-444 (526)
185 PF03467 Smg4_UPF3: Smg-4/UPF3 88.6 0.64 1.4E-05 43.4 4.6 76 354-429 7-95 (176)
186 PF10309 DUF2414: Protein of u 88.6 2.1 4.5E-05 33.3 6.6 54 354-413 5-60 (62)
187 PF15023 DUF4523: Protein of u 88.0 1.7 3.8E-05 39.3 6.6 73 351-430 83-160 (166)
188 KOG2253 U1 snRNP complex, subu 88.0 0.16 3.5E-06 55.4 0.2 150 255-413 39-194 (668)
189 PF04847 Calcipressin: Calcipr 87.8 1.5 3.4E-05 41.2 6.6 61 367-432 8-71 (184)
190 KOG0804 Cytoplasmic Zn-finger 87.6 1.2 2.5E-05 47.0 6.1 68 354-421 74-142 (493)
191 PF11767 SET_assoc: Histone ly 87.2 3 6.6E-05 32.7 6.9 56 364-427 10-66 (66)
192 KOG2416 Acinus (induces apopto 87.0 0.46 1E-05 51.5 2.9 76 252-332 440-520 (718)
193 KOG2591 c-Mpl binding protein, 86.7 1.6 3.5E-05 47.1 6.6 66 354-424 175-244 (684)
194 KOG0115 RNA-binding protein p5 86.3 0.82 1.8E-05 45.0 3.9 74 257-331 32-111 (275)
195 PF07576 BRAP2: BRCA1-associat 84.0 9 0.00019 33.1 8.9 65 257-322 14-80 (110)
196 PF07292 NID: Nmi/IFP 35 domai 83.5 0.86 1.9E-05 37.9 2.3 72 299-376 1-74 (88)
197 KOG4285 Mitotic phosphoprotein 83.1 1.9 4E-05 43.4 4.8 70 256-331 197-267 (350)
198 KOG4285 Mitotic phosphoprotein 82.2 2.8 6.1E-05 42.2 5.7 68 355-428 198-266 (350)
199 PF10309 DUF2414: Protein of u 81.8 7.1 0.00015 30.4 6.6 52 257-315 6-60 (62)
200 PF03467 Smg4_UPF3: Smg-4/UPF3 80.6 2.5 5.5E-05 39.4 4.6 67 255-322 6-81 (176)
201 PF03880 DbpA: DbpA RNA bindin 80.2 6.5 0.00014 31.1 6.2 58 365-429 12-74 (74)
202 KOG2068 MOT2 transcription fac 79.7 0.82 1.8E-05 46.5 1.1 77 355-432 78-163 (327)
203 PF15023 DUF4523: Protein of u 79.7 8.1 0.00017 35.1 7.2 74 253-332 83-160 (166)
204 KOG2253 U1 snRNP complex, subu 77.1 2.2 4.9E-05 46.9 3.5 68 353-428 39-107 (668)
205 KOG2591 c-Mpl binding protein, 76.9 5.9 0.00013 43.0 6.5 70 255-330 174-248 (684)
206 KOG4574 RNA-binding protein (c 75.9 2.2 4.7E-05 48.3 3.0 70 358-432 302-374 (1007)
207 KOG2135 Proteins containing th 74.1 2.2 4.8E-05 45.3 2.4 68 359-431 377-445 (526)
208 KOG2068 MOT2 transcription fac 71.0 2.8 6E-05 42.7 2.2 77 255-332 76-161 (327)
209 PF03880 DbpA: DbpA RNA bindin 70.0 20 0.00042 28.3 6.5 57 266-330 11-73 (74)
210 PF04847 Calcipressin: Calcipr 69.2 12 0.00027 35.2 6.1 60 269-333 8-70 (184)
211 KOG4574 RNA-binding protein (c 68.3 3 6.4E-05 47.2 1.9 72 257-333 299-373 (1007)
212 KOG0804 Cytoplasmic Zn-finger 65.6 18 0.00038 38.5 6.8 67 255-322 73-141 (493)
213 PF14111 DUF4283: Domain of un 62.9 10 0.00023 33.4 4.1 109 267-388 28-138 (153)
214 KOG2318 Uncharacterized conser 57.4 52 0.0011 36.2 8.7 39 253-291 171-214 (650)
215 PF03468 XS: XS domain; Inter 41.8 40 0.00086 29.3 4.2 50 268-318 29-78 (116)
216 PF11767 SET_assoc: Histone ly 40.8 1E+02 0.0023 24.1 5.9 54 267-328 11-65 (66)
217 PRK14548 50S ribosomal protein 39.0 84 0.0018 25.9 5.4 54 359-413 25-79 (84)
218 TIGR03636 L23_arch archaeal ri 35.9 1.1E+02 0.0023 24.8 5.5 56 357-413 16-72 (77)
219 KOG2940 Predicted methyltransf 35.1 22 0.00048 35.0 1.6 42 73-117 16-63 (325)
220 PF03468 XS: XS domain; Inter 34.7 40 0.00087 29.3 3.1 47 356-404 10-65 (116)
221 PF10567 Nab6_mRNP_bdg: RNA-re 32.8 62 0.0013 32.8 4.3 156 255-413 14-209 (309)
222 KOG4483 Uncharacterized conser 32.5 93 0.002 32.9 5.7 66 254-325 389-455 (528)
223 KOG4410 5-formyltetrahydrofola 32.1 49 0.0011 33.4 3.5 47 354-405 330-377 (396)
224 PF10567 Nab6_mRNP_bdg: RNA-re 31.3 97 0.0021 31.4 5.4 77 353-430 14-106 (309)
225 KOG4483 Uncharacterized conser 27.0 1.2E+02 0.0026 32.0 5.4 61 353-419 390-451 (528)
226 PF07145 PAM2: Ataxin-2 C-term 24.7 35 0.00076 20.1 0.6 16 172-187 2-17 (18)
227 PRK05738 rplW 50S ribosomal pr 20.9 1.4E+02 0.0031 24.8 3.8 34 358-391 23-57 (92)
No 1
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=350.12 Aligned_cols=322 Identities=19% Similarity=0.245 Sum_probs=242.9
Q ss_pred hhhHHHHhhhhhccCcccCCCCCCCCCCccccc-CCCcccCCChhhhhhcC---------CCCCCC-----CcchhhHHH
Q 013446 104 ETMAVVESASQDSAVSSAGSIPASNGQDHPKQN-GGTMVMPLDQGLYNQNN---------QRSNGG-----GDFKRDMRE 168 (443)
Q Consensus 104 ~~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~v~~~~~~~~~~~~---------~r~~~~-----~~~~~~~~e 168 (443)
..|||++++|.++||.|+.++|++...+||++| +|||++++++.||+.+| +|++.. +|+++..++
T Consensus 322 ~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~e 401 (725)
T KOG0110|consen 322 GANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEE 401 (725)
T ss_pred cccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHH
Confidence 468999999999999999999999888899999 99999999999999999 477676 999999999
Q ss_pred HHHHHhccCCccccccCCccCccCCCCC-------CCCCCCCCCC--------CCCccccCCCCCCCC--CCCcch---h
Q 013446 169 LQELFSKLNPMAEEFVPPSLAKTNNNNH-------GVNGFNGGFF--------ANNSLIFNNHNARNG--NVNANA---A 228 (443)
Q Consensus 169 L~elfs~~gpla~~~~PP~~~~a~~~~~-------~~~~~~gg~~--------~~p~~~~~~~~~~~g--~~~~~~---~ 228 (443)
|.++|..||++.+++|||.|+++++... ++..++|.++ +.|.+.++..+.... +..... +
T Consensus 402 lt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~ 481 (725)
T KOG0110|consen 402 LTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEEN 481 (725)
T ss_pred HHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccC
Confidence 9999999999999999999999998754 3333344333 333333331100000 000000 0
Q ss_pred ccccCCCCCCCCCCCCC-----ccccc-cccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-----CCce
Q 013446 229 VRRKKSFGQGKRRMNSR-----TSLAQ-REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLR 297 (443)
Q Consensus 229 ~~~~~~f~~g~~r~~~~-----~~~~~-~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~-----~skG 297 (443)
..++.+-..+....+.. ..... ......++|||.||++++|.++|..+|...|.|.++.|...++ -|+|
T Consensus 482 ~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmG 561 (725)
T KOG0110|consen 482 PSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMG 561 (725)
T ss_pred cceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccc
Confidence 00111111111100000 00000 1111223499999999999999999999999999998875332 2799
Q ss_pred EEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhh
Q 013446 298 FAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376 (443)
Q Consensus 298 ~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~ 376 (443)
||||+|.++ ++|+.|+. |+|+.++|+.|.|.+|... |... . . ........+++|+|+|||+.++..+|+++|.
T Consensus 562 fgFVEF~~~-e~A~~a~k~lqgtvldGH~l~lk~S~~k--~~~~-~-g-K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~ 635 (725)
T KOG0110|consen 562 FGFVEFAKP-ESAQAALKALQGTVLDGHKLELKISENK--PAST-V-G-KKKSKKKKGTKILVRNIPFEATKREVRKLFT 635 (725)
T ss_pred eeEEEecCH-HHHHHHHHHhcCceecCceEEEEeccCc--cccc-c-c-cccccccccceeeeeccchHHHHHHHHHHHh
Confidence 999999999 99999999 9999999999999999711 1111 0 1 1111223368999999999999999999999
Q ss_pred hcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCCC
Q 013446 377 SVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 377 ~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~~ 432 (443)
+ ||+|++|+||+.. +.++|||||+|.++.+|.+|++ |.++||+||+|+++||+..
T Consensus 636 a-FGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 636 A-FGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred c-ccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 9 9999999999875 5679999999999999999999 8999999999999999864
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=2.3e-28 Score=248.82 Aligned_cols=166 Identities=23% Similarity=0.385 Sum_probs=147.9
Q ss_pred cccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCccee
Q 013446 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVR 327 (443)
Q Consensus 251 ~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~ 327 (443)
......++|||+|||+++|+++|+++|+.||.|.+|+|+.|+. .++|||||+|.++ ++|..|++ |++..+.+++|+
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~-e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSE-ADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccH-HHHHHHHHHcCCCccCCceee
Confidence 3455679999999999999999999999999999999998875 4789999999999 99999998 999999999999
Q ss_pred ecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCH
Q 013446 328 VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMA 405 (443)
Q Consensus 328 V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~ 405 (443)
|.+++... .....++|||+|||..+|+++|+++|++ ||.|..++|++|. ++++|||||+|.+.
T Consensus 181 V~~a~p~~--------------~~~~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 181 VSYARPGG--------------ESIKDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred eecccccc--------------cccccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 99874211 1123468999999999999999999999 9999999999875 68899999999999
Q ss_pred HHHHHHHh-hCCceeCC--eeeEEeecCCC
Q 013446 406 ESAIAALN-CSGVVLGS--LPIRVSPSKTP 432 (443)
Q Consensus 406 e~A~~Al~-lnG~~l~G--r~L~V~~Ak~~ 432 (443)
++|++|++ ||+..+.+ ++|+|.+++..
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 99999999 99998866 79999999754
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=9.7e-29 Score=250.28 Aligned_cols=252 Identities=18% Similarity=0.276 Sum_probs=174.2
Q ss_pred CcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhccccCCCCCCC
Q 013446 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQGK 239 (443)
Q Consensus 160 ~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f~~g~ 239 (443)
.|+..+.++|.++|+++|++.++.+.....+...-+++|..+. .+. .........+....+.
T Consensus 11 Lp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~-----~~~-------------~A~~Ai~~l~g~~l~g 72 (352)
T TIGR01661 11 LPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYV-----RPE-------------DAEKAVNSLNGLRLQN 72 (352)
T ss_pred CCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEEC-----cHH-------------HHHHHHhhcccEEECC
Confidence 7889999999999999999999877554333211112222211 000 0000000000000000
Q ss_pred CCCCCCccccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-h
Q 013446 240 RRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-L 316 (443)
Q Consensus 240 ~r~~~~~~~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-l 316 (443)
+...-............++|||+|||..+++++|.++|++||.|..++++.+. +.++|||||+|.+. ++|+.|++ |
T Consensus 73 ~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~-~~A~~ai~~l 151 (352)
T TIGR01661 73 KTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKR-DEADRAIKTL 151 (352)
T ss_pred eeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCH-HHHHHHHHHh
Confidence 00000000011122345789999999999999999999999999999998775 45799999999999 99999998 9
Q ss_pred cccccCC--cceeecCCCCCcCCCC------------CCCC---------------------------------------
Q 013446 317 AGTMLGF--YPVRVLPSKTAIAPVN------------PTFL--------------------------------------- 343 (443)
Q Consensus 317 ng~~l~G--r~I~V~~S~~~~~p~~------------~~~~--------------------------------------- 343 (443)
+|..+.| .+|.|.++........ +...
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQ 231 (352)
T ss_pred CCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhh
Confidence 9999877 5677777532210000 0000
Q ss_pred ----------CC-Cc----------------ccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCC
Q 013446 344 ----------PR-TE----------------DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHS 394 (443)
Q Consensus 344 ----------~~-~~----------------~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~s 394 (443)
.. .. ......+.+|||+|||+.+++++|+++|++ ||.|.+++|++|. +.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~-fG~v~~v~i~~d~~t~~s 310 (352)
T TIGR01661 232 QHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGP-FGAVQNVKIIRDLTTNQC 310 (352)
T ss_pred hcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeEcCCCCCc
Confidence 00 00 000112236999999999999999999999 9999999999886 789
Q ss_pred ceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 395 TRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 395 rGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
+|||||+|.+.++|.+|+. |||..|+|++|+|+|+..
T Consensus 311 kG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 311 KGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred cceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 9999999999999999999 999999999999999764
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=7.3e-27 Score=250.56 Aligned_cols=173 Identities=25% Similarity=0.364 Sum_probs=148.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
..++||||||++++++++|+++|.+||.|.+|+++.|+. .++|||||+|.+. ++|+.|++ |||..++|+.|+|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~-e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVP-EAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcH-HHHHHHHHhcCCeEEecceeeeccc
Confidence 468999999999999999999999999999999998874 4799999999999 99999998 9999999999999865
Q ss_pred CCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHH
Q 013446 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAI 409 (443)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~ 409 (443)
....... .... .........++|||+|||+.+++++|+++|+. ||.|.+++|++|. +.++|||||+|.+.++|.
T Consensus 185 ~~~p~a~--~~~~-~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 185 SNMPQAQ--PIID-MVQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ccccccc--cccc-cccccccccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 3221100 0000 00111223579999999999999999999999 9999999999886 679999999999999999
Q ss_pred HHHh-hCCceeCCeeeEEeecCCC
Q 013446 410 AALN-CSGVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 410 ~Al~-lnG~~l~Gr~L~V~~Ak~~ 432 (443)
+|++ |||..|+|+.|+|.++-++
T Consensus 261 kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHhCCCeeCCeEEEEEecCCC
Confidence 9999 9999999999999998754
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=1.6e-26 Score=234.07 Aligned_cols=163 Identities=23% Similarity=0.436 Sum_probs=145.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
..++|||+|||..+|+++|+++|+.||+|.+|+|++|+. .++|||||+|.+. ++|.+|++ |+|..+.|++|.|.++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~-~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRP-EDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcH-HHHHHHHhhcccEEECCeeEEEEee
Confidence 358999999999999999999999999999999999874 4799999999999 99999998 9999999999999987
Q ss_pred CCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHH
Q 013446 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAI 409 (443)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~ 409 (443)
+... ......+|||+|||..+++++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.
T Consensus 81 ~~~~--------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~ 145 (352)
T TIGR01661 81 RPSS--------------DSIKGANLYVSGLPKTMTQHELESIFSP-FGQIITSRILSDNVTGLSKGVGFIRFDKRDEAD 145 (352)
T ss_pred cccc--------------cccccceEEECCccccCCHHHHHHHHhc-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 4211 1123468999999999999999999999 9999999998875 678999999999999999
Q ss_pred HHHh-hCCceeCC--eeeEEeecCCCC
Q 013446 410 AALN-CSGVVLGS--LPIRVSPSKTPV 433 (443)
Q Consensus 410 ~Al~-lnG~~l~G--r~L~V~~Ak~~~ 433 (443)
+|++ |||..+.| .+|.|.|++++.
T Consensus 146 ~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 146 RAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999 99998877 689999987654
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=7.1e-26 Score=237.61 Aligned_cols=175 Identities=27% Similarity=0.367 Sum_probs=148.8
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
+...++|||+|||..+|+++|.++|+.||.|.+|+++.|+. .++|||||+|.+. ++|.+|+.|+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~-e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDV-ESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCH-HHHHHHHHhCCCEECCeeeEEee
Confidence 45678999999999999999999999999999999998874 4799999999999 99999999999999999999988
Q ss_pred CCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHH
Q 013446 331 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESA 408 (443)
Q Consensus 331 S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A 408 (443)
+.......... ...........++|||+|||..+|+++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|
T Consensus 165 ~~~~~~~~~~~--~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 165 SQAEKNRAAKA--ATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred cchhhhhhhhc--ccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 64321111000 0000001123689999999999999999999999 9999999999876 58999999999999999
Q ss_pred HHHHh-hCCceeCCeeeEEeecCC
Q 013446 409 IAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 409 ~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
.+|+. |||..|.|++|+|.|++.
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccC
Confidence 99999 999999999999999863
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.4e-25 Score=214.53 Aligned_cols=171 Identities=25% Similarity=0.375 Sum_probs=150.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
..-+||++|...++-++|++.|.+||+|.+++|++|.+ +|+|||||.|..+ ++|+.||. |+|..|++|.|+-.|+.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k-~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNK-EDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccch-HHHHHHHHHhCCeeeccceeeccccc
Confidence 47899999999999999999999999999999999986 4899999999999 99999999 99999999999999997
Q ss_pred CCcCCCCCCCCCCCc----ccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHH
Q 013446 333 TAIAPVNPTFLPRTE----DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA 408 (443)
Q Consensus 333 ~~~~p~~~~~~~~~~----~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A 408 (443)
+.....+. .+..- .......++|||+||+..+|+++|++.|++ ||.|..||+.++ +||+||.|++.|+|
T Consensus 141 RKp~e~n~--~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~-fG~I~EVRvFk~----qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 141 RKPSEMNG--KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSP-FGPIQEVRVFKD----QGYAFVRFETKEAA 213 (321)
T ss_pred cCccccCC--CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhccc-CCcceEEEEecc----cceEEEEecchhhH
Confidence 65422221 11111 123456789999999999999999999999 999999999887 58999999999999
Q ss_pred HHHHh-hCCceeCCeeeEEeecCCCCC
Q 013446 409 IAALN-CSGVVLGSLPIRVSPSKTPVR 434 (443)
Q Consensus 409 ~~Al~-lnG~~l~Gr~L~V~~Ak~~~~ 434 (443)
..||. +||..++|+.+++.|.|....
T Consensus 214 ahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 214 AHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHhcCceeCceEEEEeccccCCC
Confidence 99998 999999999999999986533
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=3e-25 Score=239.17 Aligned_cols=161 Identities=29% Similarity=0.441 Sum_probs=144.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
.+|||||||.++||++|.++|++||.|.+|+|++|+. +++|||||+|.+. ++|++|++ +++..+.|++|+|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~-~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNP-ADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHHHhCCCEECCeeEEeecccc
Confidence 3799999999999999999999999999999999875 4799999999999 99999998 999999999999999843
Q ss_pred CcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHH
Q 013446 334 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAAL 412 (443)
Q Consensus 334 ~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al 412 (443)
. ...+.....+|||+|||.++++++|+++|+. ||.|.+|+++.+. ++++|||||+|.+.++|.+|+
T Consensus 80 ~------------~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~-~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai 146 (562)
T TIGR01628 80 D------------PSLRRSGVGNIFVKNLDKSVDNKALFDTFSK-FGNILSCKVATDENGKSRGYGFVHFEKEESAKAAI 146 (562)
T ss_pred c------------ccccccCCCceEEcCCCccCCHHHHHHHHHh-cCCcceeEeeecCCCCcccEEEEEECCHHHHHHHH
Confidence 2 1122234568999999999999999999999 9999999998876 789999999999999999999
Q ss_pred h-hCCceeCCeeeEEeecCC
Q 013446 413 N-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 413 ~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
+ +||..+.|+.|.|....+
T Consensus 147 ~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 147 QKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred HHhcccEecCceEEEecccc
Confidence 9 999999999999987643
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=2.2e-25 Score=240.29 Aligned_cols=245 Identities=21% Similarity=0.284 Sum_probs=177.9
Q ss_pred CCcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhccccCCC-CC
Q 013446 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF-GQ 237 (443)
Q Consensus 159 ~~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f-~~ 237 (443)
..|+..+.++|.++|+++|++..+.+.....+...-.+++..+. .+. ........-+.. -.
T Consensus 7 nLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~-----~~~-------------~A~~Al~~ln~~~i~ 68 (562)
T TIGR01628 7 DLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQ-----NPA-------------DAERALETMNFKRLG 68 (562)
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEEC-----CHH-------------HHHHHHHHhCCCEEC
Confidence 36778899999999999999999888776543221011111111 000 000000000000 00
Q ss_pred CC-CCCCCCccccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH
Q 013446 238 GK-RRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN 315 (443)
Q Consensus 238 g~-~r~~~~~~~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~ 315 (443)
|+ .+................+|||+|||.++++++|.++|+.||.|.+|++..+. ++++|||||+|.+. ++|..|++
T Consensus 69 gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~-e~A~~Ai~ 147 (562)
T TIGR01628 69 GKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKE-ESAKAAIQ 147 (562)
T ss_pred CeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCH-HHHHHHHH
Confidence 00 01111111111122245789999999999999999999999999999999876 45899999999999 99999998
Q ss_pred -hcccccCCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CC
Q 013446 316 -LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HH 393 (443)
Q Consensus 316 -lng~~l~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~ 393 (443)
++|..+.|+.|.|......... . .......++|||+|||.++|+++|+++|+. ||.|.++.++.+. +.
T Consensus 148 ~lng~~~~~~~i~v~~~~~~~~~--------~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~-fG~i~~~~i~~~~~g~ 217 (562)
T TIGR01628 148 KVNGMLLNDKEVYVGRFIKKHER--------E-AAPLKKFTNLYVKNLDPSVNEDKLRELFAK-FGEITSAAVMKDGSGR 217 (562)
T ss_pred HhcccEecCceEEEecccccccc--------c-cccccCCCeEEEeCCCCcCCHHHHHHHHHh-cCCEEEEEEEECCCCC
Confidence 9999999999998764321100 0 112234578999999999999999999999 9999999998876 78
Q ss_pred CceEEEEEeCCHHHHHHHHh-hCCceeC----CeeeEEeecCCC
Q 013446 394 STRIAFVEFVMAESAIAALN-CSGVVLG----SLPIRVSPSKTP 432 (443)
Q Consensus 394 srGfAFVeF~t~e~A~~Al~-lnG~~l~----Gr~L~V~~Ak~~ 432 (443)
++|||||+|.+.++|.+|++ ++|..+. |+.|.|.+++..
T Consensus 218 ~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 218 SRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred cccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccCh
Confidence 99999999999999999999 9999999 999999988654
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=4.1e-25 Score=222.14 Aligned_cols=169 Identities=24% Similarity=0.352 Sum_probs=146.4
Q ss_pred cccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hcc-cccCC-
Q 013446 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAG-TMLGF- 323 (443)
Q Consensus 249 ~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng-~~l~G- 323 (443)
.+..|.+.-.||||-||..++|.||+++|++||.|.+|.|++|+.+ ++|||||.|.+. ++|.+|+. |+. .++-|
T Consensus 27 ~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~tr-k~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 27 TDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTR-KEADEAINALHNQKTLPGM 105 (510)
T ss_pred CCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccH-HHHHHHHHHhhcccccCCC
Confidence 3445567789999999999999999999999999999999999954 799999999999 99999998 654 55655
Q ss_pred -cceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEE
Q 013446 324 -YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVE 401 (443)
Q Consensus 324 -r~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVe 401 (443)
++|.|++++... ++-...++|||+-|++.+||.+|+++|.+ ||.|++|+|++|. +.+||||||.
T Consensus 106 ~~pvqvk~Ad~E~-------------er~~~e~KLFvg~lsK~~te~evr~iFs~-fG~Ied~~ilrd~~~~sRGcaFV~ 171 (510)
T KOG0144|consen 106 HHPVQVKYADGER-------------ERIVEERKLFVGMLSKQCTENEVREIFSR-FGHIEDCYILRDPDGLSRGCAFVK 171 (510)
T ss_pred Ccceeecccchhh-------------hccccchhhhhhhccccccHHHHHHHHHh-hCccchhhheecccccccceeEEE
Confidence 889999985331 11123479999999999999999999999 9999999999988 7999999999
Q ss_pred eCCHHHHHHHHh-hCCc-eeCC--eeeEEeecCCC
Q 013446 402 FVMAESAIAALN-CSGV-VLGS--LPIRVSPSKTP 432 (443)
Q Consensus 402 F~t~e~A~~Al~-lnG~-~l~G--r~L~V~~Ak~~ 432 (443)
|.+++.|..|++ |||. .+.| .+|+|.||++.
T Consensus 172 fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 172 FSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred EehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 999999999999 9994 3444 59999999976
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=1.8e-23 Score=222.06 Aligned_cols=174 Identities=21% Similarity=0.248 Sum_probs=140.2
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcC------------CCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhccc
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGC------------GQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGT 319 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~------------G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~ 319 (443)
.....++|||||||+.+|+++|.++|..+ +.|..+.+.. .+|||||+|.+. ++|..|+.|+|.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~----~kg~afVeF~~~-e~A~~Al~l~g~ 245 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK----EKNFAFLEFRTV-EEATFAMALDSI 245 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC----CCCEEEEEeCCH-HHHhhhhcCCCe
Confidence 34567999999999999999999999864 3445555543 358999999999 999999999999
Q ss_pred ccCCcceeecCCCCCcCCCCC-----CCCCC----------CcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEE
Q 013446 320 MLGFYPVRVLPSKTAIAPVNP-----TFLPR----------TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR 384 (443)
Q Consensus 320 ~l~Gr~I~V~~S~~~~~p~~~-----~~~~~----------~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~ 384 (443)
.+.|++|.|............ ...+. .........++|||+|||..+|+++|+++|+. ||.|..
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~ 324 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES-FGDLKA 324 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeE
Confidence 999999999865433211100 00000 00111234579999999999999999999999 999999
Q ss_pred EEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 385 LRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 385 vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
+.++++. +.++|||||+|.+.++|..|+. |||+.|+|+.|+|.++..
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 9998875 7899999999999999999999 999999999999999853
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=2.8e-23 Score=222.56 Aligned_cols=175 Identities=24% Similarity=0.337 Sum_probs=139.4
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccC-Ccceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLG-FYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~-Gr~I~V~ 329 (443)
+...++|||+|||++++|++|.++|++||.|.+|+|++|. +.++|||||+|.+. ++|++|++ |++..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~-e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGK-EEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCH-HHHHHHHHHcCCCeecCCcccccc
Confidence 4456999999999999999999999999999999999885 45899999999999 99999999 9998875 6776665
Q ss_pred CCCCCc------CCC--------------------------------CCCC------------------C----------
Q 013446 330 PSKTAI------APV--------------------------------NPTF------------------L---------- 343 (443)
Q Consensus 330 ~S~~~~------~p~--------------------------------~~~~------------------~---------- 343 (443)
.+.... .|. +..+ .
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 442100 000 0000 0
Q ss_pred -------CCC--cccccccceeeeeeCCCCCCCHHHHHHHhhhcC--CceEEEEEeccCCCCceEEEEEeCCHHHHHHHH
Q 013446 344 -------PRT--EDEREMCARTIYCTNIDKKVTQADVKLFFESVC--GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412 (443)
Q Consensus 344 -------~~~--~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~f--G~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al 412 (443)
+.. .+......++|||+|||.++|+++|+++|++ | |.|.+|.++ ++||||+|.+.++|.+|+
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~I~rV~~~------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSE-FKPGKVERVKKI------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHh-cCCCceEEEEee------cCeEEEEeCCHHHHHHHH
Confidence 000 0001123468999999999999999999999 9 999999775 469999999999999999
Q ss_pred h-hCCceeCCeeeEEeecCCCCCC
Q 013446 413 N-CSGVVLGSLPIRVSPSKTPVRP 435 (443)
Q Consensus 413 ~-lnG~~l~Gr~L~V~~Ak~~~~~ 435 (443)
+ |||..|+|+.|+|+||+++...
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcc
Confidence 9 9999999999999999875443
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.1e-23 Score=212.90 Aligned_cols=179 Identities=26% Similarity=0.395 Sum_probs=147.7
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccC-Ccceee
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLG-FYPVRV 328 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~-Gr~I~V 328 (443)
+..++-||||.||.++.|++|..+|.+.|.|-+++++.|+ +.++|||||.|.++ +.|+.|++ ||+..|. |+.|.|
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~K-e~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTK-EEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecH-HHHHHHHHHhhCccccCCCEeEE
Confidence 3567999999999999999999999999999999999987 45799999999999 99999999 9998875 888888
Q ss_pred cCCCCC------cCCCCC--------------------------------CC----------------------------
Q 013446 329 LPSKTA------IAPVNP--------------------------------TF---------------------------- 342 (443)
Q Consensus 329 ~~S~~~------~~p~~~--------------------------------~~---------------------------- 342 (443)
..|... ..|.+. .|
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn 238 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGN 238 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCC
Confidence 765332 111110 00
Q ss_pred -------CCCC--cccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh
Q 013446 343 -------LPRT--EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413 (443)
Q Consensus 343 -------~~~~--~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~ 413 (443)
.|.. +.......+.|||+||+.++|++.|+++|+. ||.|.+|+.++| ||||+|.++++|.+|++
T Consensus 239 ~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~-~G~veRVkk~rD------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 239 AITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNE-FGKVERVKKPRD------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred cceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHh-ccceEEeecccc------eeEEeecchHHHHHHHH
Confidence 0010 1112334578999999999999999999999 899999988765 99999999999999999
Q ss_pred -hCCceeCCeeeEEeecCCCCCCCCCC
Q 013446 414 -CSGVVLGSLPIRVSPSKTPVRPRAPR 439 (443)
Q Consensus 414 -lnG~~l~Gr~L~V~~Ak~~~~~~~pr 439 (443)
+||..|.|..|.|.+|||+......|
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HhcCceecCceEEEEecCChhhhccch
Confidence 99999999999999999987766655
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.91 E-value=2.5e-23 Score=220.75 Aligned_cols=174 Identities=26% Similarity=0.291 Sum_probs=143.6
Q ss_pred CCCcEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 254 IIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 254 ~~~~tLfVgNLp~-~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
.++++|||+||++ .+|+++|.++|+.||.|.+|+++.++ +|||||+|.+. ++|..|+. |+|..+.|++|+|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~---~g~afV~f~~~-~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK---KETALIEMADP-YQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCEEEEEECCH-HHHHHHHHHhCCCEECCceEEEEEc
Confidence 4678999999998 69999999999999999999998764 48999999999 99999998 9999999999999988
Q ss_pred CCCcCCCCCC-----CCC-----------CCc--c-----cccccceeeeeeCCCCCCCHHHHHHHhhhcCCc--eEEEE
Q 013446 332 KTAIAPVNPT-----FLP-----------RTE--D-----EREMCARTIYCTNIDKKVTQADVKLFFESVCGE--VYRLR 386 (443)
Q Consensus 332 ~~~~~p~~~~-----~~~-----------~~~--~-----~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~--V~~vr 386 (443)
+......... ... +.. . ....++.+|||+|||.++|+++|+++|+. ||. |..++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~-~G~~~i~~ik 427 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAE-NGVHKVKKFK 427 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHh-cCCccceEEE
Confidence 6542111100 000 000 0 00134679999999999999999999999 997 88888
Q ss_pred EeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCee------eEEeecCCC
Q 013446 387 LLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP------IRVSPSKTP 432 (443)
Q Consensus 387 I~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~------L~V~~Ak~~ 432 (443)
+..+.+..+++|||+|.+.++|.+|+. |||..|.++. |+|+||++.
T Consensus 428 ~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 865544468999999999999999999 9999999985 999999864
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=8.7e-23 Score=216.89 Aligned_cols=176 Identities=16% Similarity=0.192 Sum_probs=141.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
...++|||+|||..+|+++|.++|+.||.|..+.++.++. .++|||||+|.+. ++|..|+. |+|..++|+.|.|.+
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~-~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDP-SVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCH-HHHHHHHHHcCCCEECCeEEEEEE
Confidence 3468999999999999999999999999999999998763 4799999999999 99999998 999999999999988
Q ss_pred CCCCcCCCCCCC---------CCCC-c----ccccccceeeeeeCCCCC----------CCHHHHHHHhhhcCCceEEEE
Q 013446 331 SKTAIAPVNPTF---------LPRT-E----DEREMCARTIYCTNIDKK----------VTQADVKLFFESVCGEVYRLR 386 (443)
Q Consensus 331 S~~~~~p~~~~~---------~~~~-~----~~~~~~~~tIfV~NLp~~----------~TeedL~elF~~~fG~V~~vr 386 (443)
+........... .+.. . ......+.+|+|.||... ...++|+++|++ ||.|..|.
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~-~G~v~~v~ 450 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK-YGPLINIV 450 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh-cCCeeEEE
Confidence 753321111000 0000 0 011234678999999642 123689999999 99999999
Q ss_pred EeccC-----CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 387 LLGDY-----HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 387 I~~d~-----~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
|+++. +...|+|||+|.+.++|.+|+. |||..|+|+.|.|.|...
T Consensus 451 i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 451 IPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 98753 3467999999999999999999 999999999999999753
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=6.9e-23 Score=217.43 Aligned_cols=167 Identities=21% Similarity=0.196 Sum_probs=138.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-h--cccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-L--AGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-l--ng~~l~Gr~I~V~~S 331 (443)
++++|||+|||+++|+++|.++|++||.|.+|.++++ +|||||+|.+. ++|++|+. + ++..++|++|.|.++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~----k~~afVef~~~-e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG----KRQALVEFEDE-ESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC----CCEEEEEeCch-HHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 3689999999999999999999999999999999864 47999999999 99999997 4 778999999999998
Q ss_pred CCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHH
Q 013446 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 411 (443)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~A 411 (443)
.......... ............+|+|+||++.+|+++|+++|++ ||.|.+|.|+++.+ +++|||+|.+.++|.+|
T Consensus 76 ~~~~~~~~~~--~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~-~G~V~~v~i~~~~~--~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 76 TSQEIKRDGN--SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNP-YGKVLRIVTFTKNN--VFQALVEFESVNSAQHA 150 (481)
T ss_pred CCcccccCCC--CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhc-cCCEEEEEEEecCC--ceEEEEEECCHHHHHHH
Confidence 5432111100 0000111223468999999999999999999999 99999999977643 57999999999999999
Q ss_pred Hh-hCCceeCC--eeeEEeecCC
Q 013446 412 LN-CSGVVLGS--LPIRVSPSKT 431 (443)
Q Consensus 412 l~-lnG~~l~G--r~L~V~~Ak~ 431 (443)
++ |||..|.| +.|+|+|+++
T Consensus 151 ~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 151 KAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred HHHhcCCcccCCceEEEEEEecC
Confidence 99 99999864 6899999975
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.3e-23 Score=198.26 Aligned_cols=169 Identities=22% Similarity=0.407 Sum_probs=149.5
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
++..+.|.|.-||..+|+|||+.+|...|+|++|++++|+- .|.|||||.|-++ ++|++|+. |||..+..+.|+|.
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p-~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRP-KDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecCh-HHHHHHHhhhcceeeccceEEEE
Confidence 34568999999999999999999999999999999999994 4799999999999 99999999 99999999999999
Q ss_pred CCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHH
Q 013446 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAES 407 (443)
Q Consensus 330 ~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~ 407 (443)
+++ |.. .......|||++||+.+|.++|..+|++ ||.|..-||+.|. +.+||.+||.|..+.+
T Consensus 117 yAR-----------PSs---~~Ik~aNLYvSGlPktMtqkelE~iFs~-fGrIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 117 YAR-----------PSS---DSIKDANLYVSGLPKTMTQKELEQIFSP-FGRIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred ecc-----------CCh---hhhcccceEEecCCccchHHHHHHHHHH-hhhhhhhhhhhhcccceecceeEEEecchhH
Confidence 985 112 1233468999999999999999999999 9999988998886 7899999999999999
Q ss_pred HHHHHh-hCCceeCC--eeeEEeecCCCCCCCC
Q 013446 408 AIAALN-CSGVVLGS--LPIRVSPSKTPVRPRA 437 (443)
Q Consensus 408 A~~Al~-lnG~~l~G--r~L~V~~Ak~~~~~~~ 437 (443)
|..|+. |||..=-| .+|.|.||+.|.....
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannPsq~t~ 214 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQKTN 214 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCcccccc
Confidence 999999 99976555 4899999987755433
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=1e-21 Score=206.22 Aligned_cols=172 Identities=23% Similarity=0.345 Sum_probs=138.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
.++|||+|||..+|+++|.++|+.||.|..|.+..++. .++|||||+|.+. ++|..|+. |+|..+.|++|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~-e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA-EEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH-HHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 68999999999999999999999999999999998875 4799999999999 99999998 99999999999999853
Q ss_pred CCcCCC--------------------------------------------CCC----------------CCC--------
Q 013446 333 TAIAPV--------------------------------------------NPT----------------FLP-------- 344 (443)
Q Consensus 333 ~~~~p~--------------------------------------------~~~----------------~~~-------- 344 (443)
...... ... ..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 210000 000 000
Q ss_pred ------CC-cc-cccccceeeeeeCCCCCCC----------HHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHH
Q 013446 345 ------RT-ED-EREMCARTIYCTNIDKKVT----------QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAE 406 (443)
Q Consensus 345 ------~~-~~-~~~~~~~tIfV~NLp~~~T----------eedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e 406 (443)
.. .. .....+.+|+|.||....+ .+||++.|++ ||.|..|.|.. ....|++||+|.+.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k-~G~v~~v~v~~--~~~~G~~fV~F~~~e 421 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSK-YGGVVHIYVDT--KNSAGKIYLKFSSVD 421 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHh-cCCeeEEEEeC--CCCceeEEEEECCHH
Confidence 00 00 0123457888999965444 3689999999 99999998864 345799999999999
Q ss_pred HHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 407 SAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 407 ~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
+|.+|+. |||..++|+.|.+.|...
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 9999999 999999999999999753
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.88 E-value=9.3e-23 Score=185.60 Aligned_cols=161 Identities=27% Similarity=0.371 Sum_probs=143.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
...|||||||+..++++.|.++|-+.|+|+++.+.+|+-+ .+||||++|.++ ++|+.|++ |+...+.|++|+|..+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~e-edadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTE-EDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEech-hhhHHHHHHHHHHHhcCceeEEEec
Confidence 4589999999999999999999999999999999988843 589999999999 99999999 9988899999999987
Q ss_pred CCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEE-EEeccC--CCCceEEEEEeCCHHHH
Q 013446 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL-RLLGDY--HHSTRIAFVEFVMAESA 408 (443)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~v-rI~~d~--~~srGfAFVeF~t~e~A 408 (443)
.. .......+..+||+||.+.+++..|.+.|+. ||.+.+. .|+++. +.++|||||.|.+.+.+
T Consensus 87 s~-------------~~~nl~vganlfvgNLd~~vDe~~L~dtFsa-fG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 87 SA-------------HQKNLDVGANLFVGNLDPEVDEKLLYDTFSA-FGVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred cc-------------ccccccccccccccccCcchhHHHHHHHHHh-ccccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 41 1122234479999999999999999999998 9988764 566765 68999999999999999
Q ss_pred HHHHh-hCCceeCCeeeEEeecC
Q 013446 409 IAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 409 ~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
.+|+. +||..++.+++.|+|+.
T Consensus 153 d~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 153 DAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred HHHHHHhccchhcCCceEEEEEE
Confidence 99999 99999999999999985
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=9.8e-22 Score=202.48 Aligned_cols=174 Identities=21% Similarity=0.269 Sum_probs=147.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
+.||||++||++++.++|.++|+.+|+|..|.++.++++ .+|||||.|... ++++.|+. ..+..+.|+.|.|.++.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~-ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAME-EDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehH-hHHHHHHHHhhcCcccceeccccccc
Confidence 489999999999999999999999999999999998876 599999999999 99999999 89999999999999875
Q ss_pred CCcCCCCC-----CCC-----CCCcccc--cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEE
Q 013446 333 TAIAPVNP-----TFL-----PRTEDER--EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAF 399 (443)
Q Consensus 333 ~~~~p~~~-----~~~-----~~~~~~~--~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAF 399 (443)
....+... ... ....... .....+|+|+|||+++...+|+.+|+. ||.|..|.||+.. +...||||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~-~G~V~Ei~IP~k~dgklcGFaF 162 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSN-FGKVVEIVIPRKKDGKLCGFAF 162 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhh-cceEEEEEcccCCCCCccceEE
Confidence 44332210 000 0000111 223578999999999999999999999 9999999999876 56669999
Q ss_pred EEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 400 VEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 400 VeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
|.|....+|.+|++ +||..|+||+|-|+||-+
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred EEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 99999999999999 999999999999999843
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.3e-20 Score=194.14 Aligned_cols=174 Identities=22% Similarity=0.332 Sum_probs=140.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~-skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
+.-.|+|.|||+.+...+|..+|+.||.|.+|.|.+.++. -.|||||.|... .+|..|++ +|+..|+|++|.|.|+-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~-~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEK-KDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeH-HHHHHHHHhccCceecCceeEEeeec
Confidence 3678999999999999999999999999999999865543 359999999999 99999999 99999999999999952
Q ss_pred CC---cC---------------------CCC--CCC---------------C------------------------CCCc
Q 013446 333 TA---IA---------------------PVN--PTF---------------L------------------------PRTE 347 (443)
Q Consensus 333 ~~---~~---------------------p~~--~~~---------------~------------------------~~~~ 347 (443)
.. .. +.. ..+ . +...
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 21 00 000 000 0 0000
Q ss_pred -----------ccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-
Q 013446 348 -----------DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN- 413 (443)
Q Consensus 348 -----------~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~- 413 (443)
.....-..+|||+|||+.+|+++|.+.|++ ||+|.++.|+.++ ++++|.|||.|.+..+|.+||.
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fsk-FG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSK-FGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccHHHHHHHHHh-hccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHh
Confidence 000111269999999999999999999999 9999999998876 7999999999999999999998
Q ss_pred h-----CC-ceeCCeeeEEeecC
Q 013446 414 C-----SG-VVLGSLPIRVSPSK 430 (443)
Q Consensus 414 l-----nG-~~l~Gr~L~V~~Ak 430 (443)
. .| ..|.||.|+|..|-
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAV 376 (678)
T ss_pred cCccCCCceEEEeccEEeeeecc
Confidence 3 23 78999999999874
No 22
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=7.4e-21 Score=195.13 Aligned_cols=149 Identities=26% Similarity=0.423 Sum_probs=138.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCCCc
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTAI 335 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~~~ 335 (443)
.+|||| +++|+..|.++|+++|+|+++++|+|. +|.|||||.|.++ ++|.+|+. +|...+.|++|+|+|+.+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~-~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQP-ADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCH-HHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 469999 999999999999999999999999999 7999999999999 99999999 99999999999999995321
Q ss_pred CCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-h
Q 013446 336 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C 414 (443)
Q Consensus 336 ~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-l 414 (443)
..|||.||++.++.++|.++|+. ||+|.+|++..+..-++|| ||+|++.++|.+|++ +
T Consensus 77 -------------------~~~~i~nl~~~~~~~~~~d~f~~-~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ 135 (369)
T KOG0123|consen 77 -------------------SLVFIKNLDESIDNKSLYDTFSE-FGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKL 135 (369)
T ss_pred -------------------ceeeecCCCcccCcHHHHHHHHh-hcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHh
Confidence 12999999999999999999999 9999999999988559999 999999999999999 9
Q ss_pred CCceeCCeeeEEeecCC
Q 013446 415 SGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 415 nG~~l~Gr~L~V~~Ak~ 431 (443)
||..+.|+.|.|.....
T Consensus 136 ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 136 NGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCcccCCCeeEEeeccc
Confidence 99999999999988754
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=2.1e-20 Score=178.23 Aligned_cols=248 Identities=19% Similarity=0.280 Sum_probs=176.0
Q ss_pred CcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhccccCCCCC--
Q 013446 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQ-- 237 (443)
Q Consensus 160 ~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f~~-- 237 (443)
.|..-+.+|++.||+-.|++...-+=....+.. .++||+..+- . +.. .-+..+.++.
T Consensus 49 LPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGq-------SLGYGFVNYv----~--p~D--------Ae~AintlNGLr 107 (360)
T KOG0145|consen 49 LPQNMTQDELRSLFGSIGEIESCKLVRDKITGQ-------SLGYGFVNYV----R--PKD--------AEKAINTLNGLR 107 (360)
T ss_pred cccccCHHHHHHHhhcccceeeeeeeecccccc-------ccccceeeec----C--hHH--------HHHHHhhhccee
Confidence 677779999999999999887655555554442 2333322111 1 000 0011111110
Q ss_pred -CCCCCCCCccccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHH
Q 013446 238 -GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAAL 314 (443)
Q Consensus 238 -g~~r~~~~~~~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al 314 (443)
........-.+...+...+..|||++||..+|+.||+++|++||.|..-+|.-|..+ ++|.|||.|... ++|+.|+
T Consensus 108 LQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr-~EAe~AI 186 (360)
T KOG0145|consen 108 LQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR-IEAEEAI 186 (360)
T ss_pred eccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch-hHHHHHH
Confidence 000000001111123345689999999999999999999999999988888877754 799999999999 9999999
Q ss_pred H-hcccccCC--cceeecCCCCCcC--------------------CCCC------------------CCCCCCcc-----
Q 013446 315 N-LAGTMLGF--YPVRVLPSKTAIA--------------------PVNP------------------TFLPRTED----- 348 (443)
Q Consensus 315 ~-lng~~l~G--r~I~V~~S~~~~~--------------------p~~~------------------~~~~~~~~----- 348 (443)
. |||..-.| .+|.|+++..... |... .+.|...+
T Consensus 187 k~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l 266 (360)
T KOG0145|consen 187 KGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGL 266 (360)
T ss_pred HhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCcccccccee
Confidence 9 99988665 6788888643200 0000 01111100
Q ss_pred ------cccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCcee
Q 013446 349 ------EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVL 419 (443)
Q Consensus 349 ------~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l 419 (443)
.......+|||-||.+.+++.-|+++|.+ ||-|..|++++|+ ++++|||||.+.+-++|..|+. |||..+
T Consensus 267 ~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgp-FGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~l 345 (360)
T KOG0145|consen 267 AGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGP-FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 345 (360)
T ss_pred eeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCc-ccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccc
Confidence 11234579999999999999999999999 9999999999998 6899999999999999999999 999999
Q ss_pred CCeeeEEeecC
Q 013446 420 GSLPIRVSPSK 430 (443)
Q Consensus 420 ~Gr~L~V~~Ak 430 (443)
+++.|.|+|-.
T Consensus 346 g~rvLQVsFKt 356 (360)
T KOG0145|consen 346 GDRVLQVSFKT 356 (360)
T ss_pred cceEEEEEEec
Confidence 99999999843
No 24
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=1e-20 Score=182.88 Aligned_cols=149 Identities=25% Similarity=0.424 Sum_probs=135.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCCCc
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTAI 335 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~~~ 335 (443)
..|||||||..+++.+|+.+|.+||.|.+|.|++ .||||..++. ..+..|+. |+|..|.|.-|.|+-|+..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK------NYgFVHiEdk-taaedairNLhgYtLhg~nInVeaSksK- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK------NYGFVHIEDK-TAAEDAIRNLHGYTLHGVNINVEASKSK- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec------ccceEEeecc-cccHHHHhhcccceecceEEEEEecccc-
Confidence 5799999999999999999999999999999983 4999999999 99999999 9999999999999987522
Q ss_pred CCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-h
Q 013446 336 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C 414 (443)
Q Consensus 336 ~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-l 414 (443)
...+++|+|+||.+.++..+|+..|++ ||.|..+.|.+ +|+||+|.-.++|..|+. |
T Consensus 75 ---------------sk~stkl~vgNis~tctn~ElRa~fe~-ygpviecdivk------dy~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 75 ---------------SKASTKLHVGNISPTCTNQELRAKFEK-YGPVIECDIVK------DYAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred ---------------CCCccccccCCCCccccCHHHhhhhcc-cCCceeeeeec------ceeEEEEeeccchHHHHhcc
Confidence 234689999999999999999999999 99999999975 599999999999999999 9
Q ss_pred CCceeCCeeeEEeecCCCCCC
Q 013446 415 SGVVLGSLPIRVSPSKTPVRP 435 (443)
Q Consensus 415 nG~~l~Gr~L~V~~Ak~~~~~ 435 (443)
+|+.+.|++++|+.+..-.++
T Consensus 133 ~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred cccccccceeeeeeecccccc
Confidence 999999999999998654444
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=7.7e-20 Score=180.98 Aligned_cols=170 Identities=26% Similarity=0.397 Sum_probs=145.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
-++||||.|.+...|+.|+..|.+||+|.+|.+..|+-+ .+|||||+|+-+ |+|+.|++ |||.+++|+-|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvP-EaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVP-EAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCc-HHHHHHHHHhccccccCccccccCCC
Confidence 589999999999999999999999999999999999854 699999999999 99999999 99999999999997532
Q ss_pred CCcCCCCCCCCCCCc--ccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHH
Q 013446 333 TAIAPVNPTFLPRTE--DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESA 408 (443)
Q Consensus 333 ~~~~p~~~~~~~~~~--~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A 408 (443)
.- |... +-.+ .+....-.+|||..+.+.++++||+..|+. ||+|.+|.+.+++ +.++||+|++|.+..+-
T Consensus 192 Nm--pQAQ---piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEA-FG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 192 NM--PQAQ---PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred CC--cccc---hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHh-hcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 11 1110 1111 112224578999999999999999999998 9999999999987 58999999999999999
Q ss_pred HHHHh-hCCceeCCeeeEEeecCCC
Q 013446 409 IAALN-CSGVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 409 ~~Al~-lnG~~l~Gr~L~V~~Ak~~ 432 (443)
..|+. ||=+.|+|+-|+|..+-+|
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred HHHhhhcchhhcccceEecccccCC
Confidence 99998 9999999999999887544
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=4.4e-19 Score=178.95 Aligned_cols=258 Identities=22% Similarity=0.302 Sum_probs=177.9
Q ss_pred CcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhccccCCCCCCC
Q 013446 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQGK 239 (443)
Q Consensus 160 ~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f~~g~ 239 (443)
+|---+..+|+++|.+||-+-++.++.+..+....++=|..+. + +-.+......-.....+....
T Consensus 42 Iprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~-----------t----rk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 42 IPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYY-----------T----RKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEec-----------c----HHHHHHHHHHhhcccccCCCC
Confidence 4444488999999999999999999999877542221111110 0 000000000000000110000
Q ss_pred CCCCCCcccccc-ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-h
Q 013446 240 RRMNSRTSLAQR-EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-L 316 (443)
Q Consensus 240 ~r~~~~~~~~~~-~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-l 316 (443)
....-+..+.++ .-...+.||||-|+..+||.+++++|++||.|++|.|.+|. ..++|||||.|.++ +.|..|++ |
T Consensus 107 ~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstk-e~A~~Aika~ 185 (510)
T KOG0144|consen 107 HPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTK-EMAVAAIKAL 185 (510)
T ss_pred cceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehH-HHHHHHHHhh
Confidence 000000001111 11235899999999999999999999999999999999988 46999999999999 99999999 9
Q ss_pred cccc-cCC--cceeecCCCCCcC----------------------CCC--------------------------------
Q 013446 317 AGTM-LGF--YPVRVLPSKTAIA----------------------PVN-------------------------------- 339 (443)
Q Consensus 317 ng~~-l~G--r~I~V~~S~~~~~----------------------p~~-------------------------------- 339 (443)
||.. +.| .||.|+|++.... +.+
T Consensus 186 ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~ 265 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPP 265 (510)
T ss_pred ccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccC
Confidence 9854 555 7899999764200 000
Q ss_pred ---------------------------------------------C---------C----------------C-------
Q 013446 340 ---------------------------------------------P---------T----------------F------- 342 (443)
Q Consensus 340 ---------------------------------------------~---------~----------------~------- 342 (443)
+ . +
T Consensus 266 L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~ 345 (510)
T KOG0144|consen 266 LGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANY 345 (510)
T ss_pred CCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhc
Confidence 0 0 0
Q ss_pred ---------------------------CCC----------------------------------------Ccccccccce
Q 013446 343 ---------------------------LPR----------------------------------------TEDEREMCAR 355 (443)
Q Consensus 343 ---------------------------~~~----------------------------------------~~~~~~~~~~ 355 (443)
.+. ..+.+.....
T Consensus 346 n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGa 425 (510)
T KOG0144|consen 346 NLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGA 425 (510)
T ss_pred ccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCcc
Confidence 000 0000111235
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCCC
Q 013446 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 356 tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~~ 432 (443)
.+||.+||-+.-+.||...|.+ ||.|++.++..|+ +-++.|+||.|++..+|.+||. |||.++++++|+|......
T Consensus 426 nlfiyhlPqefgdq~l~~~f~p-fG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 426 NLFIYHLPQEFGDQDLIATFQP-FGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred ceeeeeCchhhhhHHHHHHhcc-ccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 7999999999999999999999 9999999998876 7899999999999999999999 9999999999999997654
Q ss_pred CC
Q 013446 433 VR 434 (443)
Q Consensus 433 ~~ 434 (443)
..
T Consensus 505 ~n 506 (510)
T KOG0144|consen 505 NN 506 (510)
T ss_pred CC
Confidence 33
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.78 E-value=1.2e-17 Score=179.86 Aligned_cols=161 Identities=17% Similarity=0.258 Sum_probs=106.2
Q ss_pred CCcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCC---C--CCCccccCCCCCCCCCCCcchhccccC
Q 013446 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGF---F--ANNSLIFNNHNARNGNVNANAAVRRKK 233 (443)
Q Consensus 159 ~~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~---~--~~p~~~~~~~~~~~g~~~~~~~~~~~~ 233 (443)
.++|..+.++|.++|++||++.++.++....+...-+++|.++.-.- . ..-++... ++-.. . -.+..
T Consensus 114 nLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i------~GR~I-k-V~rp~ 185 (612)
T TIGR01645 114 SISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML------GGRNI-K-VGRPS 185 (612)
T ss_pred CCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE------eccee-e-ecccc
Confidence 48999999999999999999999988776554432233333322100 0 00000000 00000 0 00000
Q ss_pred CCCCCCCCCCCCccccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHH
Q 013446 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGAR 311 (443)
Q Consensus 234 ~f~~g~~r~~~~~~~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~ 311 (443)
........ ...........++|||+||++++++++|+++|+.||.|.+|++.+|+. .++|||||+|.+. ++|.
T Consensus 186 ~~p~a~~~----~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~-e~A~ 260 (612)
T TIGR01645 186 NMPQAQPI----IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL-QSQS 260 (612)
T ss_pred cccccccc----cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH-HHHH
Confidence 00000000 000011223457999999999999999999999999999999998874 4799999999999 9999
Q ss_pred HHHH-hcccccCCcceeecCCC
Q 013446 312 AALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 312 ~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
+|+. ||+..++|+.|+|.++.
T Consensus 261 kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HHHHHhCCCeeCCeEEEEEecC
Confidence 9999 99999999999997643
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.8e-18 Score=177.55 Aligned_cols=233 Identities=21% Similarity=0.342 Sum_probs=174.3
Q ss_pred hhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhccccCCC-CCCCCC
Q 013446 163 KRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF-GQGKRR 241 (443)
Q Consensus 163 ~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f-~~g~~r 241 (443)
..+...|-++|++.||+..+-+=-.. +. -+.++..|..|. .........+.. -.|+.
T Consensus 9 ~v~e~~l~~~f~~~~~v~s~rvc~d~-ts-------lgy~yvnf~~~~-------------da~~A~~~~n~~~~~~~~- 66 (369)
T KOG0123|consen 9 DVTEAMLFDKFSPAGPVLSIRVCRDA-TS-------LGYAYVNFQQPA-------------DAERALDTMNFDVLKGKP- 66 (369)
T ss_pred cCChHHHHHHhcccCCceeEEEeecC-Cc-------cceEEEecCCHH-------------HHHHHHHHcCCcccCCcE-
Confidence 45778899999999999775554443 22 223222322221 010111111111 11121
Q ss_pred CCCCccccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccc
Q 013446 242 MNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTM 320 (443)
Q Consensus 242 ~~~~~~~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~ 320 (443)
-+..|+++++ ..|||.||+.+++..+|.++|+.||.|++|++..|.+.++|| ||+|.++ ++|++|+. +||..
T Consensus 67 --~rim~s~rd~---~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e-~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 67 --IRIMWSQRDP---SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESE-ESAKKAIEKLNGML 139 (369)
T ss_pred --EEeehhccCC---ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCH-HHHHHHHHHhcCcc
Confidence 1133333332 339999999999999999999999999999999999889999 9999999 99999999 99999
Q ss_pred cCCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEE
Q 013446 321 LGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAF 399 (443)
Q Consensus 321 l~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAF 399 (443)
+.|++|.|...........+ ... ....-+.+++.|++...++..|.++|.. +|.|.++.++.+. +++++|+|
T Consensus 140 l~~kki~vg~~~~~~er~~~-----~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~-~g~i~s~~v~~~~~g~~~~~gf 212 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAP-----LGE-YKKRFTNVYVKNLEEDSTDEELKDLFSA-YGSITSVAVMRDSIGKSKGFGF 212 (369)
T ss_pred cCCCeeEEeeccchhhhccc-----ccc-hhhhhhhhheeccccccchHHHHHhhcc-cCcceEEEEeecCCCCCCCccc
Confidence 99999999765432211111 111 3344578999999999999999999999 9999999999886 77999999
Q ss_pred EEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 400 VEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 400 VeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
|.|.+.++|..|+. |++..+++..+-|..++.
T Consensus 213 v~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 213 VNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred eeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 99999999999999 999999999999988765
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.75 E-value=1.1e-18 Score=180.72 Aligned_cols=177 Identities=29% Similarity=0.370 Sum_probs=149.2
Q ss_pred ccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHHhcccccCCccee
Q 013446 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVR 327 (443)
Q Consensus 250 ~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~ 327 (443)
..++.+.+|+|+.-|+..++..+|.++|+..|.|.+|+++.|..+ ++|.|||+|.+. +.+..|+.|.|+.+.|.+|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~-~sVp~aiaLsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDE-QSVPLAIALSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecc-cchhhHhhhcCCcccCceeE
Confidence 345667899999999999999999999999999999999999854 799999999999 99999999999999999999
Q ss_pred ecCCCCCcCCCCCCCCCCCc-ccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCC
Q 013446 328 VLPSKTAIAPVNPTFLPRTE-DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVM 404 (443)
Q Consensus 328 V~~S~~~~~p~~~~~~~~~~-~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t 404 (443)
|+.+..+...... ..+... ..-..+...+||+||.+.+|+++|+.+|++ ||.|..|.+++|. |.++|||||+|.+
T Consensus 252 vq~sEaeknr~a~-~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifep-fg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 252 VQLSEAEKNRAAN-ASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEP-FGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred ecccHHHHHHHHh-ccccccccccccchhhhhhcccccCchHHHHhhhccC-cccceeeeeccccccccccCcceEEEec
Confidence 9987543211100 000000 011122234999999999999999999999 9999999999984 8999999999999
Q ss_pred HHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 405 AESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 405 ~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
.++|.+|+. |||+.|-|+.|+|..-
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEEe
Confidence 999999998 9999999999999764
No 30
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=4.2e-18 Score=163.09 Aligned_cols=185 Identities=21% Similarity=0.349 Sum_probs=147.8
Q ss_pred cccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccc-cCC--
Q 013446 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTM-LGF-- 323 (443)
Q Consensus 249 ~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~-l~G-- 323 (443)
.+.+..+++.||||.|.+.-.|||++.+|..||.|.+|.+.+.+ +.+|||+||.|.+. .+|++||. |+|.. +-|
T Consensus 12 sesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~-~eAqaAI~aLHgSqTmpGAS 90 (371)
T KOG0146|consen 12 SESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSH-AEAQAAINALHGSQTMPGAS 90 (371)
T ss_pred cccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccc-hHHHHHHHHhcccccCCCCc
Confidence 33444567999999999999999999999999999999999877 46899999999999 99999999 88744 444
Q ss_pred cceeecCCCCCcC-----------------CC------------------------------------------------
Q 013446 324 YPVRVLPSKTAIA-----------------PV------------------------------------------------ 338 (443)
Q Consensus 324 r~I~V~~S~~~~~-----------------p~------------------------------------------------ 338 (443)
..|.|+++++... |.
T Consensus 91 SSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ 170 (371)
T KOG0146|consen 91 SSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALN 170 (371)
T ss_pred cceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHh
Confidence 5677777654200 00
Q ss_pred ---------C-------C---------------------------------------------CCC--------------
Q 013446 339 ---------N-------P---------------------------------------------TFL-------------- 343 (443)
Q Consensus 339 ---------~-------~---------------------------------------------~~~-------------- 343 (443)
. + ...
T Consensus 171 angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~ 250 (371)
T KOG0146|consen 171 ANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGV 250 (371)
T ss_pred hcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhH
Confidence 0 0 000
Q ss_pred ------------------CCC------cccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceE
Q 013446 344 ------------------PRT------EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRI 397 (443)
Q Consensus 344 ------------------~~~------~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGf 397 (443)
+.. ........+.|||-.||-+..+.+|...|-+ ||.|.+.++.-|. +.+|+|
T Consensus 251 ~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~P-FGhivSaKVFvDRATNQSKCF 329 (371)
T KOG0146|consen 251 QQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLP-FGHIVSAKVFVDRATNQSKCF 329 (371)
T ss_pred HHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcc-ccceeeeeeeehhccccccce
Confidence 000 0011234589999999999999999999999 9999999998776 789999
Q ss_pred EEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCCCCCC
Q 013446 398 AFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRP 435 (443)
Q Consensus 398 AFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~~~~~ 435 (443)
+||.|.++.+|+.||. |||+.|+-++|+|.+-+|....
T Consensus 330 GFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 330 GFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred eeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999 9999999999999997765433
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=5.8e-18 Score=162.46 Aligned_cols=133 Identities=25% Similarity=0.354 Sum_probs=111.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTA 334 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~~~ 334 (443)
..+|||||||+.++||+-|..+|+..|.|..|+|+.| .|+|.+....
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~~p 51 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWATAP 51 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhccccccCc
Confidence 4599999999999999999999999999999999865 2344443211
Q ss_pred cCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHH
Q 013446 335 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAAL 412 (443)
Q Consensus 335 ~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al 412 (443)
.+ .........-.+||+.|...++-++|++.|-+ ||+|..++|++|. +++|||+||.|...++|++||
T Consensus 52 ---~n------Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~p-FGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI 121 (321)
T KOG0148|consen 52 ---GN------QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAP-FGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAI 121 (321)
T ss_pred ---cc------CCCCccccceeEEehhcchhcchHHHHHHhcc-ccccccceEeecccCCcccceeEEeccchHHHHHHH
Confidence 00 00111112467899999999999999999999 9999999999998 799999999999999999999
Q ss_pred h-hCCceeCCeeeEEeecC
Q 013446 413 N-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 413 ~-lnG~~l~Gr~L~V~~Ak 430 (443)
. |||.+|++|.|+-.||-
T Consensus 122 ~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 122 QQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred HHhCCeeeccceeeccccc
Confidence 9 99999999999999984
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.73 E-value=1e-17 Score=167.48 Aligned_cols=167 Identities=22% Similarity=0.315 Sum_probs=144.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
..++||||+|++++|++.|++.|.+||.|.+|.+++|+.+ ++||+||+|.+. +.+.+++......++|+.|.+..+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~-~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATP-EGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCC-cchheeecccccccCCccccceecc
Confidence 5699999999999999999999999999999999998854 799999999999 9999999877888999999887653
Q ss_pred CCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHH
Q 013446 333 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIA 410 (443)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~ 410 (443)
..... ........+.+|||++||..++++++++.|++ ||.|..+-++.|. ...+||+||.|.+.+++.+
T Consensus 84 ~r~~~--------~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 84 SREDQ--------TKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred Ccccc--------cccccccceeEEEecCcCCCCchHHHhhhhhc-cceeEeeEEeecccccccccceeeEeccccccce
Confidence 11100 01111124679999999999999999999999 9999999888886 6899999999999999999
Q ss_pred HHhhCCceeCCeeeEEeecCC
Q 013446 411 ALNCSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 411 Al~lnG~~l~Gr~L~V~~Ak~ 431 (443)
++.+.-+.|+|+.+.|..|-|
T Consensus 155 v~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 155 VTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ecccceeeecCceeeEeeccc
Confidence 999888999999999999865
No 33
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.3e-14 Score=132.82 Aligned_cols=156 Identities=19% Similarity=0.256 Sum_probs=125.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
.+++|||||||.++-+.+|.++|-+||.|..|.+...+ ..-+||||+|+++ .+|+.|+. -+|..++|+.|+|.+.+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g~ppfafVeFEd~-RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-GPPPFAFVEFEDP-RDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-CCCCeeEEEecCc-cchhhhhhcccccccCcceEEEEeccC
Confidence 56899999999999999999999999999999886433 2347999999999 99999999 999999999999999765
Q ss_pred CcCCCCCCC-------------CCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEE
Q 013446 334 AIAPVNPTF-------------LPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFV 400 (443)
Q Consensus 334 ~~~p~~~~~-------------~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFV 400 (443)
......... ..+.. ...-....+.|++||.+.+.+||++...+ -|.|....+.+| |.+.|
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgp-psrrSe~RVvVsGLp~SgSWQDLKDHmRe-aGdvCfadv~rD-----g~GvV 155 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGP-PSRRSEYRVVVSGLPPSGSWQDLKDHMRE-AGDVCFADVQRD-----GVGVV 155 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCC-cccccceeEEEecCCCCCchHHHHHHHHh-hCCeeeeeeecc-----cceee
Confidence 432111000 00000 01112368999999999999999999999 799999999777 58999
Q ss_pred EeCCHHHHHHHHh-hCCcee
Q 013446 401 EFVMAESAIAALN-CSGVVL 419 (443)
Q Consensus 401 eF~t~e~A~~Al~-lnG~~l 419 (443)
+|...++.+.|+. |....+
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeehhhHHHHHHhhccccc
Confidence 9999999999998 766443
No 34
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.59 E-value=3.7e-14 Score=133.77 Aligned_cols=168 Identities=24% Similarity=0.377 Sum_probs=135.4
Q ss_pred cEEEEcCCCCCCcHHHHHH----HhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 257 RTVYVSDIDQQVTEEQLAA----LFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e----~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
.||||.||+..+..++|+. +|++||.|.+|..+..+ +.+|-|||.|.+. +.|-.|+. |+|..+.|++++|+++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmRGQA~VvFk~~-~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMRGQAFVVFKET-EAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-CccCceEEEecCh-hHHHHHHHHhcCCcccCchhheecc
Confidence 4999999999999999998 99999999999887543 3579999999999 99999998 9999999999999997
Q ss_pred CCCcCCCCC---CCCCC--------------------------------C-cccccccceeeeeeCCCCCCCHHHHHHHh
Q 013446 332 KTAIAPVNP---TFLPR--------------------------------T-EDEREMCARTIYCTNIDKKVTQADVKLFF 375 (443)
Q Consensus 332 ~~~~~p~~~---~~~~~--------------------------------~-~~~~~~~~~tIfV~NLp~~~TeedL~elF 375 (443)
+........ .+.++ . ..........+++.|||.+++.+.+..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 653111000 00000 0 01113345789999999999999999999
Q ss_pred hhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeC-CeeeEEeecC
Q 013446 376 ESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSK 430 (443)
Q Consensus 376 ~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~-Gr~L~V~~Ak 430 (443)
++ |...+.++++... .+.|||+|.+...|..|.+ +.|..+- ...+.|.+++
T Consensus 168 ~q-f~g~keir~i~~~---~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQ-FPGFKEIRLIPPR---SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hh-CcccceeEeccCC---CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99 8999999886533 5799999999999999998 8887776 7889988875
No 35
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.57 E-value=1.1e-13 Score=136.96 Aligned_cols=179 Identities=18% Similarity=0.263 Sum_probs=139.2
Q ss_pred ccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hc
Q 013446 248 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--------DCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LA 317 (443)
Q Consensus 248 ~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~--------~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-ln 317 (443)
+....+...+.|||.|||.++|.+++.++|++||.|. .|+++++. ++-+|=|.|.|-.. +++..|+. |+
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~-ESVeLA~~ilD 204 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKR-ESVELAIKILD 204 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecc-cHHHHHHHHhC
Confidence 4444455667899999999999999999999999885 37888766 45699999999999 99999999 99
Q ss_pred ccccCCcceeecCCCCCcCCC-CCC----------------------CCCCC-cccccccceeeeeeCCCC----CCC--
Q 013446 318 GTMLGFYPVRVLPSKTAIAPV-NPT----------------------FLPRT-EDEREMCARTIYCTNIDK----KVT-- 367 (443)
Q Consensus 318 g~~l~Gr~I~V~~S~~~~~p~-~~~----------------------~~~~~-~~~~~~~~~tIfV~NLp~----~~T-- 367 (443)
+..+.|+.|+|..++-..... ++. ..+.. ...+....++|.++||-. ..+
T Consensus 205 e~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~ 284 (382)
T KOG1548|consen 205 EDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPD 284 (382)
T ss_pred cccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHH
Confidence 999999999998764331110 000 01111 222344567899999832 333
Q ss_pred -----HHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 368 -----QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 368 -----eedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
++||++.+++ ||.|.+|.|.- .++.|.+-|.|.+.++|..|+. |+|.+++||.|.-+..+
T Consensus 285 l~~dlkedl~eec~K-~G~v~~vvv~d--~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 285 LLNDLKEDLTEECEK-FGQVRKVVVYD--RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHHHHHH-hCCcceEEEec--cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 4677788999 99999997743 3678999999999999999999 99999999999887654
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.57 E-value=2.2e-14 Score=129.29 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=74.2
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
.+++|||+|||+.+|+++|+++|++ ||.|.++.|+.|. ++++|||||+|.+.++|++|++ ||+..|+|++|+|+|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4579999999999999999999999 9999999999886 6899999999999999999999 9999999999999999
Q ss_pred CCC
Q 013446 430 KTP 432 (443)
Q Consensus 430 k~~ 432 (443)
.+.
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 743
No 37
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.53 E-value=1.6e-13 Score=141.22 Aligned_cols=169 Identities=24% Similarity=0.243 Sum_probs=133.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~~ 333 (443)
....-|-+.+|||++|++||.++|+.|+ |+++.+.+...+..|-|||+|.+. +++.+|++++...++.+-|.|-.+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~se-edv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSE-EDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeech-HHHHHHHHhhHHHhCCceEEEEccCC
Confidence 3456788899999999999999999996 677877777677789999999999 99999999999999999999987643
Q ss_pred CcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEE--EEEeccC-CCCceEEEEEeCCHHHHHH
Q 013446 334 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR--LRLLGDY-HHSTRIAFVEFVMAESAIA 410 (443)
Q Consensus 334 ~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~--vrI~~d~-~~srGfAFVeF~t~e~A~~ 410 (443)
.... ... .............|.+++||+.+|++||.++|..+ .|.. +-++.+. +++.|.|||.|++.+.|++
T Consensus 86 ~e~d--~~~-~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL--~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 86 AEAD--WVM-RPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGL--EIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred cccc--ccc-cCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCC--cccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 2111 000 11111112455789999999999999999999874 3333 3345565 6899999999999999999
Q ss_pred HHhhCCceeCCeeeEEeec
Q 013446 411 ALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 411 Al~lnG~~l~Gr~L~V~~A 429 (443)
|+.-|-..|+.|-|.|-.+
T Consensus 161 Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 161 ALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred HHHHHHHhhccceEEeehh
Confidence 9987778888888888554
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=1.4e-13 Score=146.48 Aligned_cols=171 Identities=24% Similarity=0.317 Sum_probs=135.5
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCce-EEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG-~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
+...+.++|+|||..+..++|.++|..||.|..+.+. +. | -+.|.|..+ .+|..|.. |.+..+...++.+.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~---G~~aiv~fl~p-~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PG---GTGAIVEFLNP-LEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecC--cc---cceeeeeecCc-cchHHHHHHhchhhhccCcccccc
Confidence 3456889999999999999999999999999998443 32 3 499999999 99999999 999888888888887
Q ss_pred CCCCcCCCCCCC-------------------------CCCCcc-----------cccccceeeeeeCCCCCCCHHHHHHH
Q 013446 331 SKTAIAPVNPTF-------------------------LPRTED-----------EREMCARTIYCTNIDKKVTQADVKLF 374 (443)
Q Consensus 331 S~~~~~p~~~~~-------------------------~~~~~~-----------~~~~~~~tIfV~NLp~~~TeedL~el 374 (443)
......+..+.. .....+ ......++|||+||++..|.++|...
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 644332211000 000000 01112234999999999999999999
Q ss_pred hhhcCCceEEEEEeccC-C----CCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 375 FESVCGEVYRLRLLGDY-H----HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 375 F~~~fG~V~~vrI~~d~-~----~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
|.. .|.|+++.|.+.. . .+.|||||+|.+.++|++|+. |+|+.|+|+.|.|+++.
T Consensus 536 F~k-~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSK-QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHh-cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999 8999999887644 2 366999999999999999999 99999999999999987
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.48 E-value=1.8e-13 Score=142.42 Aligned_cols=167 Identities=22% Similarity=0.272 Sum_probs=128.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCCC
Q 013446 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTA 334 (443)
Q Consensus 258 tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~~ 334 (443)
.||||||-+.+|+++|+.+|++||.|+.|.+..|. +.++|||||+|... +.|.+|+. |||..+-|+.|+|......
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~-~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK-EDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH-HHHHHHHHHhccceecCceEEEEEeeee
Confidence 39999999999999999999999999999999885 55799999999999 99999998 9999999999998652211
Q ss_pred cCCCC----------------------------------C----C-----------------CCC--C-Cccccc-----
Q 013446 335 IAPVN----------------------------------P----T-----------------FLP--R-TEDERE----- 351 (443)
Q Consensus 335 ~~p~~----------------------------------~----~-----------------~~~--~-~~~~~~----- 351 (443)
..... + + +.. + ......
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 00000 0 0 000 0 000001
Q ss_pred --ccceeeeeeCCCCC--CC--------HHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCce
Q 013446 352 --MCARTIYCTNIDKK--VT--------QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVV 418 (443)
Q Consensus 352 --~~~~tIfV~NLp~~--~T--------eedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~ 418 (443)
..+.++.++|+-.. .| .+||.+.+++ ||+|..|.+- ++.. |+.||.|.+.+.|..|++ |||.|
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k-~g~v~hi~vd--~ns~-g~VYvrc~s~~~A~~a~~alhgrW 514 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGK-HGKVCHIFVD--KNSA-GCVYVRCPSAEAAGTAVKALHGRW 514 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHh-cCCeeEEEEc--cCCC-ceEEEecCcHHHHHHHHHHHhhhh
Confidence 23456677777332 22 2788899999 8999988773 3333 999999999999999999 99999
Q ss_pred eCCeeeEEeec
Q 013446 419 LGSLPIRVSPS 429 (443)
Q Consensus 419 l~Gr~L~V~~A 429 (443)
|.|+.|...|-
T Consensus 515 F~gr~Ita~~~ 525 (549)
T KOG0147|consen 515 FAGRMITAKYL 525 (549)
T ss_pred hccceeEEEEe
Confidence 99999999884
No 40
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.48 E-value=1.2e-13 Score=141.19 Aligned_cols=156 Identities=20% Similarity=0.287 Sum_probs=102.7
Q ss_pred CcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhccccCCCCCCC
Q 013446 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQGK 239 (443)
Q Consensus 160 ~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f~~g~ 239 (443)
+|+..+.++|.++|+++|++..+-++....+...-.++|.++.- + . ........-+...-..
T Consensus 115 Lp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~-----~----------e---~A~~Ai~~LnG~~l~g 176 (346)
T TIGR01659 115 LPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGS-----E----------A---DSQRAIKNLNGITVRN 176 (346)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEcc-----H----------H---HHHHHHHHcCCCccCC
Confidence 79999999999999999999888776554332211122222110 0 0 0000000000000000
Q ss_pred CCCCCCccccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-h
Q 013446 240 RRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-L 316 (443)
Q Consensus 240 ~r~~~~~~~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-l 316 (443)
+.+..............++|||+|||+.+|+++|+++|++||.|..|+|++|+. +++|||||+|.+. ++|++|++ |
T Consensus 177 r~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~-e~A~~Ai~~l 255 (346)
T TIGR01659 177 KRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR-EEAQEAISAL 255 (346)
T ss_pred ceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH-HHHHHHHHHh
Confidence 000000000111223457899999999999999999999999999999998864 4689999999999 99999999 9
Q ss_pred cccccCC--cceeecCCCCC
Q 013446 317 AGTMLGF--YPVRVLPSKTA 334 (443)
Q Consensus 317 ng~~l~G--r~I~V~~S~~~ 334 (443)
++..+.+ ++|.|.+++..
T Consensus 256 ng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CCCccCCCceeEEEEECCcc
Confidence 9998865 68999887543
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.47 E-value=2.2e-13 Score=122.75 Aligned_cols=78 Identities=26% Similarity=0.467 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
..++|||+|||+.+|+++|+++|++||.|.+|.++.|+. .++|||||+|.+. ++|+.|++ |++..+.|++|+|.++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~-e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE-GAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHHHcCCCEECCEEEEEEeC
Confidence 468999999999999999999999999999999998874 4799999999999 99999998 9999999999999987
Q ss_pred CC
Q 013446 332 KT 333 (443)
Q Consensus 332 ~~ 333 (443)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 53
No 42
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=4.8e-13 Score=127.32 Aligned_cols=79 Identities=28% Similarity=0.357 Sum_probs=75.5
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
...+|.|.||+..+++.+|+++|.+ ||.|.++.|.+|+ |.+||||||.|.++++|.+||+ |||.-+++..|+|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~-fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRP-FGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhc-cCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4578999999999999999999999 9999999999987 8999999999999999999999 9999999999999999
Q ss_pred CCC
Q 013446 430 KTP 432 (443)
Q Consensus 430 k~~ 432 (443)
+|.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 975
No 43
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=7.5e-13 Score=102.25 Aligned_cols=68 Identities=29% Similarity=0.490 Sum_probs=64.6
Q ss_pred eeeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc-CCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeE
Q 013446 357 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 425 (443)
Q Consensus 357 IfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d-~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~ 425 (443)
|||+|||..+|+++|+++|++ ||.|..+.+..+ .+..+++|||+|.+.++|.+|++ ++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999 999999999885 47899999999999999999999 999999999986
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.41 E-value=8.3e-13 Score=102.01 Aligned_cols=68 Identities=31% Similarity=0.550 Sum_probs=63.7
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecC-CCCCceEEEEEEcChHHHHHHHHH-hcccccCCccee
Q 013446 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-PNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVR 327 (443)
Q Consensus 259 LfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~d-k~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~ 327 (443)
|||+|||.++|+++|+++|++||.|..+.+..+ .+.++|||||+|.+. ++|+.|++ ++|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~-~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESE-EDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSH-HHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCH-HHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999985 456799999999999 99999999 999999999885
No 45
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.3e-13 Score=128.15 Aligned_cols=159 Identities=26% Similarity=0.324 Sum_probs=127.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCCC-
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTA- 334 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~~- 334 (443)
..+|||+||+.+.+.+|.++|..||.+.++.+. .||+||+|.+. .+|.-|+. +++..+.|-.+.|.+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk------~gf~fv~fed~-rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK------NGFGFVEFEDP-RDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee------cccceeccCch-hhhhcccchhcCceecceeeeeecccccc
Confidence 468999999999999999999999999998775 37999999999 99999998 9999999988888887532
Q ss_pred ---cCCCCCCC--CCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHH
Q 013446 335 ---IAPVNPTF--LPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAI 409 (443)
Q Consensus 335 ---~~p~~~~~--~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~ 409 (443)
..+..+.. ..+...........+.+.|++..+.+.+|.+.|++ +|++....+ .++++||+|.+.++|.
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~~~~~------~~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRP-AGEVTYVDA------RRNFAFVEFSEQEDAK 147 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcc-cCCCchhhh------hccccceeehhhhhhh
Confidence 11111000 01111111334578889999999999999999999 899855444 4679999999999999
Q ss_pred HHHh-hCCceeCCeeeEEeec
Q 013446 410 AALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 410 ~Al~-lnG~~l~Gr~L~V~~A 429 (443)
.|++ |+|..+.|++|.+...
T Consensus 148 ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 148 RALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hcchhccchhhcCceeeeccc
Confidence 9999 9999999999999544
No 46
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=3e-12 Score=120.89 Aligned_cols=156 Identities=26% Similarity=0.369 Sum_probs=117.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
.++|||+|||..+|+++|.++|..||.|..+.+..|+ +.++|||||+|.+. +++..|+. ++|..+.|++|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~-~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESE-ESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCH-HHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999886 56799999999999 99999999 99999999999999853
Q ss_pred C---CcCCCCC----C---CCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEE
Q 013446 333 T---AIAPVNP----T---FLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFV 400 (443)
Q Consensus 333 ~---~~~p~~~----~---~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFV 400 (443)
. ....... . ...............+++.+++..++..++...|.. +|.+....+.... .......++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 272 (306)
T COG0724 194 PASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKS-RGDIVRASLPPSKDGKIPKSRSFV 272 (306)
T ss_pred cccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccc-cccceeeeccCCCCCccccccccc
Confidence 2 1111100 0 001112223445678999999999999999999998 8998776665433 223334445
Q ss_pred EeCCHHHHHHHHh
Q 013446 401 EFVMAESAIAALN 413 (443)
Q Consensus 401 eF~t~e~A~~Al~ 413 (443)
.+.....+..+..
T Consensus 273 ~~~~~~~~~~~~~ 285 (306)
T COG0724 273 GNEASKDALESNS 285 (306)
T ss_pred chhHHHhhhhhhc
Confidence 5555555555544
No 47
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.41 E-value=4e-12 Score=129.02 Aligned_cols=173 Identities=21% Similarity=0.221 Sum_probs=138.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhc-CCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~-~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
..+.+||+|||++..+++|+++|.. .|+|+.|.+..|. .+++|||.|+|+++ |.+++|++ ||...+.|++|.|+--
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~-E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDP-ENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCH-HHHHHHHHHhhhccccCceEEEecc
Confidence 3477999999999999999999975 6999999999887 57899999999999 99999999 9999999999999764
Q ss_pred CCCcCC--------C-----------------CC----------CCCCCCcc----------------------------
Q 013446 332 KTAIAP--------V-----------------NP----------TFLPRTED---------------------------- 348 (443)
Q Consensus 332 ~~~~~p--------~-----------------~~----------~~~~~~~~---------------------------- 348 (443)
+..... . +. .+.+++.+
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 321000 0 00 00000000
Q ss_pred --------cccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCce
Q 013446 349 --------EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVV 418 (443)
Q Consensus 349 --------~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~ 418 (443)
-.+....++||.||.+.+..+.|.+.|.- .|+|..+.+-.|+ +.++|||.++|..+-+|..|+. +++.-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgm-AGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGM-AGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcc-ceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 01233468999999999999999999996 7999999887776 8999999999999999999999 88777
Q ss_pred eCCeeeEEeec
Q 013446 419 LGSLPIRVSPS 429 (443)
Q Consensus 419 l~Gr~L~V~~A 429 (443)
+..++..+...
T Consensus 281 ~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 281 LFDRRMTVRLD 291 (608)
T ss_pred Cccccceeecc
Confidence 77787777663
No 48
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.39 E-value=7.1e-12 Score=126.51 Aligned_cols=169 Identities=27% Similarity=0.319 Sum_probs=135.3
Q ss_pred CcEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 256 RRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 256 ~~tLfVgNLp~~-tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
...|.|.||... +|.+.|..+|.-||.|.+|+|...++ -.|.|.|.+. ..|+.|++ |+|..+.|++|+|.+|+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~-~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDG-QQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecch-hHHHHHHHHhhcceecCceEEEeeccC
Confidence 588999999766 99999999999999999999997664 4799999999 99999999 999999999999999976
Q ss_pred CcCCCCC--------------CCCCCCc-------ccccccceeeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC
Q 013446 334 AIAPVNP--------------TFLPRTE-------DEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDY 391 (443)
Q Consensus 334 ~~~p~~~--------------~~~~~~~-------~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG-~V~~vrI~~d~ 391 (443)
....... ..+.+.. ..--.++.++++.|||.++++++|+++|.. -| .|+..+..
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~-~g~~vkafkff--- 448 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQE-PGGQVKAFKFF--- 448 (492)
T ss_pred ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhc-CCceEEeeeec---
Confidence 5321110 0001110 001245679999999999999999999998 46 44544432
Q ss_pred CCCceEEEEEeCCHHHHHHHHh-hCCceeCCe-eeEEeecCCC
Q 013446 392 HHSTRIAFVEFVMAESAIAALN-CSGVVLGSL-PIRVSPSKTP 432 (443)
Q Consensus 392 ~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr-~L~V~~Ak~~ 432 (443)
++.+.+|++.+.+.|+|..|+- ++++.+++. .|+|+|++..
T Consensus 449 ~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 449 QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 3456799999999999999998 999988876 9999999864
No 49
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=9.8e-13 Score=114.26 Aligned_cols=80 Identities=30% Similarity=0.426 Sum_probs=72.6
Q ss_pred cccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCccee
Q 013446 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVR 327 (443)
Q Consensus 251 ~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~ 327 (443)
..-..++|||||||++.||||+|.++|+.||.|..|.+=-|+ .++.|||||+|.+. ++|..|+. ++|+.++.++|+
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~-~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSR-DDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecc-hhHHHHHHHhccCccccccee
Confidence 344578999999999999999999999999999998776666 45799999999999 99999999 999999999999
Q ss_pred ecCC
Q 013446 328 VLPS 331 (443)
Q Consensus 328 V~~S 331 (443)
+.|-
T Consensus 110 ~D~D 113 (153)
T KOG0121|consen 110 IDWD 113 (153)
T ss_pred eecc
Confidence 9985
No 50
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.35 E-value=3.3e-12 Score=124.29 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTA 334 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~~~ 334 (443)
..++|||+|||+.+|+++|+++|+.||.|.+|.|..|+. ++|||||+|.++ ++|..|+.|+|..+.|++|.|.++...
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~-eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDP-QGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcH-HHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 358999999999999999999999999999999998864 469999999999 999999999999999999999998654
Q ss_pred c
Q 013446 335 I 335 (443)
Q Consensus 335 ~ 335 (443)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.35 E-value=5.6e-12 Score=122.75 Aligned_cols=76 Identities=26% Similarity=0.460 Sum_probs=71.3
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecCC
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak~ 431 (443)
.++|||+|||+.+|+++|+++|+. ||.|.+|+|+.+. ..+|||||+|.++++|..|+.|||..|+|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~d~-~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQSEN-ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeecC-CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 579999999999999999999998 9999999998875 357999999999999999999999999999999999863
No 52
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2.7e-11 Score=120.83 Aligned_cols=259 Identities=19% Similarity=0.271 Sum_probs=169.4
Q ss_pred CcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCC---CCCCCCccccCCCCCCCCCCCcchhccccCCCC
Q 013446 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNG---GFFANNSLIFNNHNARNGNVNANAAVRRKKSFG 236 (443)
Q Consensus 160 ~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~g---g~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f~ 236 (443)
+.|.-..+-|+..|..|||+..+.|.=..++..+-..+|.++-- ..++.- ..++.-.|+.+.. -.+-.++.
T Consensus 121 IsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlE----qMNg~mlGGRNiK--VgrPsNmp 194 (544)
T KOG0124|consen 121 ISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALE----QMNGQMLGGRNIK--VGRPSNMP 194 (544)
T ss_pred eEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHH----HhccccccCcccc--ccCCCCCc
Confidence 77777888999999999999999998887777654444433210 000000 0000000000000 00111112
Q ss_pred CCCCCCCCCccccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHH
Q 013446 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAAL 314 (443)
Q Consensus 237 ~g~~r~~~~~~~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al 314 (443)
+.... ...-+++...-.+|||..+.++.+|+||+.+|..||+|..|++.+++. +.+|||||+|.+. .+-..|+
T Consensus 195 QAQpi----ID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~-qs~~eAi 269 (544)
T KOG0124|consen 195 QAQPI----IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL-QSQSEAI 269 (544)
T ss_pred ccchH----HHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccc-cchHHHh
Confidence 11111 011123334557999999999999999999999999999999999884 4699999999999 9999999
Q ss_pred H-hcccccCCcceeecCCCCCcC-----------C---------------------------------------------
Q 013446 315 N-LAGTMLGFYPVRVLPSKTAIA-----------P--------------------------------------------- 337 (443)
Q Consensus 315 ~-lng~~l~Gr~I~V~~S~~~~~-----------p--------------------------------------------- 337 (443)
. ||-..++|..|+|..+-+... |
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~ 349 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPL 349 (544)
T ss_pred hhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCC
Confidence 8 999999999999866422100 0
Q ss_pred ---------------------CCC--------------------CC--CCCC-cc-------------------------
Q 013446 338 ---------------------VNP--------------------TF--LPRT-ED------------------------- 348 (443)
Q Consensus 338 ---------------------~~~--------------------~~--~~~~-~~------------------------- 348 (443)
..| ++ +... ..
T Consensus 350 ~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G 429 (544)
T KOG0124|consen 350 GTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISG 429 (544)
T ss_pred CCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccC
Confidence 000 00 0000 00
Q ss_pred -----------cccccceeeeeeCCC--C---CCCHHHHHHHhhhcCCceEEEEEeccC-CCC-----ceEEEEEeCCHH
Q 013446 349 -----------EREMCARTIYCTNID--K---KVTQADVKLFFESVCGEVYRLRLLGDY-HHS-----TRIAFVEFVMAE 406 (443)
Q Consensus 349 -----------~~~~~~~tIfV~NLp--~---~~TeedL~elF~~~fG~V~~vrI~~d~-~~s-----rGfAFVeF~t~e 406 (443)
.+...++.|.++|+- . +.-+.+|++.+++ ||.|.+|.|.... +.. ----||+|....
T Consensus 430 ~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgK-fG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 430 SSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGK-FGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred ccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhc-ccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 012334677888873 3 3445789999999 9999999886543 110 114699999999
Q ss_pred HHHHHHh-hCCceeCCeeeEEeecC
Q 013446 407 SAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 407 ~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
++.+|.. |+|.+++|++++-+..+
T Consensus 509 e~~rak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred HHHHHHHhhccceecCceeehhhhh
Confidence 9999999 99999999999876554
No 53
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.33 E-value=8.5e-12 Score=97.38 Aligned_cols=68 Identities=32% Similarity=0.522 Sum_probs=61.7
Q ss_pred eeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeE
Q 013446 357 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 425 (443)
Q Consensus 357 IfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~ 425 (443)
|+|+|||..+++++|+++|+. ||.|..+.+..+. +..+|+|||+|.+.++|.+|++ ++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-FGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-SSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 789999999999999999999 8999999998765 6789999999999999999999 888999999985
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.32 E-value=2.1e-11 Score=114.93 Aligned_cols=163 Identities=21% Similarity=0.259 Sum_probs=120.0
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEec-CCCC--CceEEEEEEcChHHHHHHHHH-hcccccC---Ccc
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNS--VLRFAFIEFTDEAEGARAALN-LAGTMLG---FYP 325 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~-dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l~---Gr~ 325 (443)
....+||||.+||.++.-.+|..+|..|-..+.+.+.. +++. -+.+||+.|.+. ..|.+|+. |||..++ +..
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~-q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSH-QFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecch-HHHHHHHHHhcCeeeccccCce
Confidence 34569999999999999999999999997777776654 3321 257999999999 99999999 9999986 677
Q ss_pred eeecCCCCC---------cCCCCC-----------CC-------------------------C-----------------
Q 013446 326 VRVLPSKTA---------IAPVNP-----------TF-------------------------L----------------- 343 (443)
Q Consensus 326 I~V~~S~~~---------~~p~~~-----------~~-------------------------~----------------- 343 (443)
|+|.+++.. ..|... .. .
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 888775432 000000 00 0
Q ss_pred -CCC-------cc--cccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh
Q 013446 344 -PRT-------ED--EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413 (443)
Q Consensus 344 -~~~-------~~--~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~ 413 (443)
|.. .+ .....+.|+||.||..++|+++|+.+|+. |-....++|....| ...||++|++.+.|..|++
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~-~~gf~~l~~~~~~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR-YPGFHILKIRARGG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh-CCCceEEEEecCCC--cceEeecHHHHHHHHHHHH
Confidence 000 00 00112468999999999999999999998 77777777743323 3489999999999999999
Q ss_pred -hCCcee
Q 013446 414 -CSGVVL 419 (443)
Q Consensus 414 -lnG~~l 419 (443)
|.|..|
T Consensus 267 ~lqg~~~ 273 (284)
T KOG1457|consen 267 HLQGNLL 273 (284)
T ss_pred Hhhccee
Confidence 988665
No 55
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=5.6e-12 Score=124.34 Aligned_cols=100 Identities=20% Similarity=0.288 Sum_probs=84.4
Q ss_pred cccccCCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCce
Q 013446 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR 396 (443)
Q Consensus 317 ng~~l~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srG 396 (443)
++...+|.++.+..+. ..+.....++|+|+|||+..-+.||+.+|++ ||.|.+|.|+.+..-+||
T Consensus 73 ~~~~t~g~~~~~~~st--------------~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~k-fG~VldVEIIfNERGSKG 137 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPST--------------NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEK-FGKVLDVEIIFNERGSKG 137 (376)
T ss_pred CCCCCCCCccccCCCC--------------cCCCCCCCceeEeecCCccccCccHHHHHHh-hCceeeEEEEeccCCCCc
Confidence 4555666666666552 2223345589999999999999999999999 999999999888767899
Q ss_pred EEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 397 IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 397 fAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
||||+|++.+||.+|.. |||.++.||+|.|..|.+
T Consensus 138 FGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 138 FGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred cceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 99999999999999999 999999999999998853
No 56
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.28 E-value=1.5e-11 Score=118.24 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTA 334 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~~~ 334 (443)
.+.||||+||++.+|+++|+++|+.||.|.+|.|.+|. ...|||||+|.++ +++..|+.|+|..|.+++|.|.+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~-et~gfAfVtF~d~-~aaetAllLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG-EYACTAYVTFKDA-YALETAVLLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC-CcceEEEEEECCH-HHHHHHHhcCCCeeCCceEEEEeCccc
Confidence 45899999999999999999999999999999999885 3458999999999 999999999999999999999987654
Q ss_pred cCCC
Q 013446 335 IAPV 338 (443)
Q Consensus 335 ~~p~ 338 (443)
..+.
T Consensus 82 ~~~~ 85 (243)
T PLN03121 82 EDEF 85 (243)
T ss_pred ccCc
Confidence 4433
No 57
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=4.1e-11 Score=91.12 Aligned_cols=71 Identities=34% Similarity=0.536 Sum_probs=66.2
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 356 tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
+|+|+|||..+++++|+++|++ ||.|..+.+..+.+.++|+|||+|.+.++|..|+. ++|..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-FGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-cCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999 99999999987767788999999999999999999 99999999999874
No 58
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.24 E-value=3.6e-11 Score=129.67 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=89.2
Q ss_pred HHHHHHHH-hcccccCCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEE
Q 013446 308 EGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386 (443)
Q Consensus 308 e~A~~Al~-lng~~l~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vr 386 (443)
++|.+|+. ++|..+........+... |... +.......++|||+|||.++++++|+++|++ ||.|..++
T Consensus 20 ~~a~~a~~~~~gy~~~~~~g~r~~g~P---p~~~------~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~-~G~I~~vr 89 (578)
T TIGR01648 20 EAALKALLERTGYTLVQENGQRKYGGP---PPGW------SGVQPGRGCEVFVGKIPRDLYEDELVPLFEK-AGPIYELR 89 (578)
T ss_pred HHHHHHHHHhhCccccccCCcccCCCC---CCcc------cCCCCCCCCEEEeCCCCCCCCHHHHHHHHHh-hCCEEEEE
Confidence 77888887 888887655555444421 1110 1111234589999999999999999999999 99999999
Q ss_pred EeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeC-CeeeEEeecC
Q 013446 387 LLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSK 430 (443)
Q Consensus 387 I~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~-Gr~L~V~~Ak 430 (443)
|++|. +.++|||||+|.+.++|.+|++ ||+..+. |+.|.|.++.
T Consensus 90 l~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 90 LMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred EEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 99987 7899999999999999999999 9998885 7888777653
No 59
>smart00362 RRM_2 RNA recognition motif.
Probab=99.22 E-value=5.8e-11 Score=90.26 Aligned_cols=71 Identities=41% Similarity=0.619 Sum_probs=65.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 258 tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
+|||+|||..+++++|.++|.+||.|..+.+..+++.++|+|||+|.+. ++|..|+. +++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~-~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESE-EDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCH-HHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999999987766789999999999 99999998 99999999988763
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.21 E-value=4.7e-11 Score=93.14 Aligned_cols=68 Identities=35% Similarity=0.558 Sum_probs=60.2
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccCCccee
Q 013446 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVR 327 (443)
Q Consensus 259 LfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~ 327 (443)
|||+|||+++++++|.++|+.||.|..+.+..++ +.++|+|||+|.+. ++|..|+. +++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~-~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSE-EDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSH-HHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCH-HHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999865 34689999999999 99999999 777999998874
No 61
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.3e-11 Score=105.82 Aligned_cols=78 Identities=27% Similarity=0.393 Sum_probs=71.1
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
...+++|||+||.+.+|++.|.++|+. ||.|+.|.+-.|. ..+=|||||+|.+.++|..|+. ++|+.|+.++|+++
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 346789999999999999999999999 9999999776665 4577899999999999999999 99999999999999
Q ss_pred ec
Q 013446 428 PS 429 (443)
Q Consensus 428 ~A 429 (443)
|-
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 84
No 62
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.20 E-value=3.9e-10 Score=112.93 Aligned_cols=164 Identities=21% Similarity=0.220 Sum_probs=128.2
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHh---cccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNL---AGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~l---ng~~l~Gr~I~V~ 329 (443)
...+-.|.|++|-..++|.+|.+..+.||.|..+..++.+ ..+.|+|.+. +.|..++.+ +...+.|+.--+.
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~----r~alvefedi-~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK----RQALVEFEDI-EGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc----ceeeeeeccc-cchhhheehhccCcccccCchhhcc
Confidence 3456789999999999999999999999999998887655 4899999999 999999873 5566788888888
Q ss_pred CCCCCcCCCCCCCCCCCcccccccceeee--eeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHH
Q 013446 330 PSKTAIAPVNPTFLPRTEDEREMCARTIY--CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAES 407 (443)
Q Consensus 330 ~S~~~~~p~~~~~~~~~~~~~~~~~~tIf--V~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~ 407 (443)
+|....... +. ++.......|. |-|--+.+|.+-|..++.+ +|+|.+|.|.++.+ -.|.|||++.+.
T Consensus 103 yStsq~i~R-----~g--~es~~pN~VLl~TIlNp~YpItvDVly~Icnp-~GkVlRIvIfkkng---VQAmVEFdsv~~ 171 (494)
T KOG1456|consen 103 YSTSQCIER-----PG--DESATPNKVLLFTILNPQYPITVDVLYTICNP-QGKVLRIVIFKKNG---VQAMVEFDSVEV 171 (494)
T ss_pred cchhhhhcc-----CC--CCCCCCCeEEEEEeecCccccchhhhhhhcCC-CCceEEEEEEeccc---eeeEEeechhHH
Confidence 874332211 11 12122223333 4555568999999999999 89999999987643 379999999999
Q ss_pred HHHHHh-hCCc--eeCCeeeEEeecCCC
Q 013446 408 AIAALN-CSGV--VLGSLPIRVSPSKTP 432 (443)
Q Consensus 408 A~~Al~-lnG~--~l~Gr~L~V~~Ak~~ 432 (443)
|++|.. |||. +-+.++|+|+||+|.
T Consensus 172 AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 172 AQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred HHHHHhhcccccccccceeEEEEecCcc
Confidence 999999 9995 455689999999875
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.20 E-value=1.1e-11 Score=113.49 Aligned_cols=156 Identities=23% Similarity=0.343 Sum_probs=115.8
Q ss_pred CcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhccccCCCCCCC
Q 013446 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQGK 239 (443)
Q Consensus 160 ~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f~~g~ 239 (443)
.+-+-+.+.|.|||-+-||+..+.+|-...+..+++++|.++- ......+..+-.+...-|+. .
T Consensus 17 ld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~---------------~eedadYAikiln~VkLYgr-p 80 (203)
T KOG0131|consen 17 LDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFR---------------TEEDADYAIKILNMVKLYGR-P 80 (203)
T ss_pred CCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEe---------------chhhhHHHHHHHHHHHhcCc-e
Confidence 6667788999999999999999999999999877777776653 11222222222233333432 1
Q ss_pred CCCCCCccccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEecCCC--CCceEEEEEEcChHHHHHHHHH-
Q 013446 240 RRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGDPN--SVLRFAFIEFTDEAEGARAALN- 315 (443)
Q Consensus 240 ~r~~~~~~~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~-v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~- 315 (443)
.+.+... ..+..-..+.+|||+||.+.++|..|.++|+.||.+.. -++++|++ +++|||||.|.+. +++.+|+.
T Consensus 81 Irv~kas-~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf-easd~ai~s 158 (203)
T KOG0131|consen 81 IRVNKAS-AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF-EASDAAIGS 158 (203)
T ss_pred eEEEecc-cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH-HHHHHHHHH
Confidence 1221111 11122234589999999999999999999999998865 46778776 5799999999999 99999999
Q ss_pred hcccccCCcceeecCCCC
Q 013446 316 LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 316 lng~~l~Gr~I~V~~S~~ 333 (443)
++|..+..++|.|.++..
T Consensus 159 ~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFK 176 (203)
T ss_pred hccchhcCCceEEEEEEe
Confidence 999999999999998743
No 64
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2.9e-11 Score=110.28 Aligned_cols=75 Identities=28% Similarity=0.440 Sum_probs=69.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCCC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTA 334 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~~ 334 (443)
.+.||||||+..+++.||...|..||++.+|+|...+. |||||+|+++ .+|+.|+. |+|..|+|..|.|.+++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~-RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDP-RDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCc-ccHHHHHhhcCCccccCceEEEEeecCC
Confidence 58999999999999999999999999999999987554 8999999999 99999999 9999999999999998643
No 65
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.20 E-value=1e-10 Score=112.46 Aligned_cols=75 Identities=24% Similarity=0.304 Sum_probs=70.3
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecC
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak 430 (443)
..+|+|+||++.+|+++|+++|+. ||+|.+|+|++| +..++||||+|.++++|..|+.|+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D-~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRS-GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecC-CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 479999999999999999999998 999999999988 456689999999999999999999999999999998865
No 66
>PLN03213 repressor of silencing 3; Provisional
Probab=99.19 E-value=5e-11 Score=122.71 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=72.2
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCH--HHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMA--ESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~--e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
....+|||+||++.+|++||+..|.+ ||.|.+|.|++..| ||||||+|.+. .++.+||. |||..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45689999999999999999999999 99999999997766 99999999987 78999999 999999999999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9764
No 67
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=1.3e-10 Score=122.29 Aligned_cols=176 Identities=20% Similarity=0.243 Sum_probs=133.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.....+||++||...++.++.|+...||.+....++.|.. .++||||.+|.+. .-...|++ |||..++++.|.|+.
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dp-svtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDP-SVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCC-cchhhhhcccchhhhcCceeEeeh
Confidence 3568999999999999999999999999999999998875 5899999999999 88999999 999999999999987
Q ss_pred CCCCcCCCCCC---------CCCCC-cccccccceeeeeeCCCC--CC-CH-------HHHHHHhhhcCCceEEEEEecc
Q 013446 331 SKTAIAPVNPT---------FLPRT-EDEREMCARTIYCTNIDK--KV-TQ-------ADVKLFFESVCGEVYRLRLLGD 390 (443)
Q Consensus 331 S~~~~~p~~~~---------~~~~~-~~~~~~~~~tIfV~NLp~--~~-Te-------edL~elF~~~fG~V~~vrI~~d 390 (443)
+-....-.+.. ..+.. .......+..+.+.|+=. .+ .+ ++++..+.+ ||.|..|.|+++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k-~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAK-FGAVRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcc-cCceeEEecCCC
Confidence 53221111110 00110 011122334444455311 11 11 455666778 899999999987
Q ss_pred -C----CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 391 -Y----HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 391 -~----~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
. ....|-.||+|.+.++++.|.. |+|..+.||.++.+|-..
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 3 3567889999999999999999 999999999999999754
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=5e-11 Score=113.24 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
.-+.||||+|++.|+.+.|+++|++||+|++..++.|+. +|+|||||.|++. ++|.+|++-..-+|+||+..+.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~-~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDA-EAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecH-HHHHHHhcCCCCcccccccccchhh
Confidence 458999999999999999999999999999999999985 4899999999999 9999999977788999998888764
Q ss_pred C
Q 013446 333 T 333 (443)
Q Consensus 333 ~ 333 (443)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 69
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.1e-10 Score=117.03 Aligned_cols=155 Identities=21% Similarity=0.286 Sum_probs=111.4
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-----CCce---EEEEEEcChHHHHHHHHH-hcc----
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLR---FAFIEFTDEAEGARAALN-LAG---- 318 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~-----~skG---~aFVeF~t~~e~A~~Al~-lng---- 318 (443)
....++.||||+||++++|++|...|..||.+. +......+ -++| |+|+.|.++ .++...+. +..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E-~sV~~Ll~aC~~~~~~ 332 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDE-RSVQSLLSACSEGEGN 332 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecch-HHHHHHHHHHhhcccc
Confidence 455789999999999999999999999999763 12221111 1355 999999999 88777665 311
Q ss_pred ccc-------CCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC
Q 013446 319 TML-------GFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY 391 (443)
Q Consensus 319 ~~l-------~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~ 391 (443)
..| ..+.++|.++... +..+ -......-.+.+||||++||..++.++|..+|+..||.|.++.|-.|+
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~la----Ds~f-v~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~ 407 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLA----DSDF-VLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP 407 (520)
T ss_pred eEEEEecCcccccceeEEeeEec----cchh-hhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc
Confidence 111 1122333222100 0001 011223345678999999999999999999999889999999998885
Q ss_pred --CCCceEEEEEeCCHHHHHHHHh
Q 013446 392 --HHSTRIAFVEFVMAESAIAALN 413 (443)
Q Consensus 392 --~~srGfAFVeF~t~e~A~~Al~ 413 (443)
+.++|-|-|.|.+..+-.+||.
T Consensus 408 k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 408 KLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccCCCCCcceeeecccHHHHHHHh
Confidence 6899999999999999999997
No 70
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.6e-11 Score=114.01 Aligned_cols=81 Identities=28% Similarity=0.376 Sum_probs=76.5
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
.++|||++|..++|+.-|...|-+ ||.|..|.+|.|. .++||||||+|...++|.+|+. ||+-.|.||.|+|.+|+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIP-FGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIP-FGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred ceeEEeccchHHHHHHHHHhcccc-ccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 489999999999999999999999 9999999999997 6899999999999999999999 99999999999999999
Q ss_pred CCCCC
Q 013446 431 TPVRP 435 (443)
Q Consensus 431 ~~~~~ 435 (443)
|+...
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 86444
No 71
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.2e-10 Score=114.96 Aligned_cols=78 Identities=23% Similarity=0.318 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
...+|+|+|||+.--+.||+.+|.+||.|.+|.|+...-.|||||||.|++. ++|++|.+ |+|+++.||+|.|..+..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~-~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENP-ADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecCh-hhHHHHHHHhhcceeeceEEEEeccch
Confidence 4589999999999999999999999999999999988777999999999999 99999998 999999999999998743
No 72
>smart00360 RRM RNA recognition motif.
Probab=99.13 E-value=2.7e-10 Score=86.11 Aligned_cols=68 Identities=32% Similarity=0.494 Sum_probs=62.8
Q ss_pred eeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 359 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 359 V~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
|+|||..+++++|+++|++ ||.|..+.+..+. +.++|+|||+|.+.++|.+|+. +++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999 9999999998764 5789999999999999999999 99999999999874
No 73
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1e-10 Score=106.68 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=69.4
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
..++|||+||+..+++.||..+|.. ||.|.+|.|.+.+ .|||||+|+++.+|..|+. |+|..|+|.+|+|+.+.-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~-yG~lrsvWvArnP---PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSK-YGPLRSVWVARNP---PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHh-cCcceeEEEeecC---CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3589999999999999999999998 9999999887643 6899999999999999999 999999999999999863
No 74
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=5.8e-10 Score=85.14 Aligned_cols=72 Identities=36% Similarity=0.540 Sum_probs=66.5
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 356 tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
+|+|+|||..+++++|+++|+. ||.|..+.+..+. ...+|+|||+|.+.++|..|++ +++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-FGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-cCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999 8999999998765 4678999999999999999999 999999999999875
No 75
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.11 E-value=1.1e-09 Score=110.80 Aligned_cols=168 Identities=23% Similarity=0.267 Sum_probs=129.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCce-EEEEEEcChHHHHHHHHH-hcccccC-C-cceeecC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEAEGARAALN-LAGTMLG-F-YPVRVLP 330 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG-~aFVeF~t~~e~A~~Al~-lng~~l~-G-r~I~V~~ 330 (443)
.--.++|+|+-+.+|-|-|..+|++||.|..|......+ | -|.|.|.+. +.|..|.. |+|..+. | +.|+|.+
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn---~FQALvQy~d~-~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN---GFQALVQYTDA-VSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc---chhhhhhccch-hhHHHHHHhccCCcccCceeEEEeeh
Confidence 345778999999999999999999999998876553333 3 489999999 99999998 9997764 3 6788888
Q ss_pred CCCC--------------cCCCCC--------------------------CCCCC------Ccccc-cc--cceeeeeeC
Q 013446 331 SKTA--------------IAPVNP--------------------------TFLPR------TEDER-EM--CARTIYCTN 361 (443)
Q Consensus 331 S~~~--------------~~p~~~--------------------------~~~~~------~~~~~-~~--~~~tIfV~N 361 (443)
|+-. ..|.-| ...+. ..+.+ .. ....|.|.|
T Consensus 225 Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 225 SKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred hhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence 6532 111100 00000 00011 11 247788888
Q ss_pred CCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 362 IDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 362 Lp~-~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
|.. .+|.+.|..+|+- ||.|.+|+|+.+++ --|+|+|.+...|+-|++ |+|..++|++|+|.+++
T Consensus 305 ln~~~VT~d~LftlFgv-YGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 305 LNEEAVTPDVLFTLFGV-YGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred CchhccchhHHHHHHhh-hcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 865 6999999999997 99999999987653 569999999999999999 99999999999999997
No 76
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.10 E-value=4.4e-10 Score=106.00 Aligned_cols=77 Identities=35% Similarity=0.522 Sum_probs=73.2
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
..+|||+|||..+|+++|.++|.. ||.|..+.+..|. +.++|||||+|.+.++|..|+. ++|..|.|++|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 589999999999999999999999 9999999998885 8999999999999999999999 99999999999999975
Q ss_pred C
Q 013446 431 T 431 (443)
Q Consensus 431 ~ 431 (443)
+
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 77
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3.9e-10 Score=107.67 Aligned_cols=77 Identities=27% Similarity=0.379 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+..+|-|.||+.+++|++|.++|.+||.|..+.+.+|+.+ ++|||||.|.+. ++|.+|++ |+|.-++.--|+|.|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sR-ddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESR-DDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecH-HHHHHHHHHccCcccceEEEEEEec
Confidence 5689999999999999999999999999999999999976 699999999999 99999999 9999999999999999
Q ss_pred C
Q 013446 332 K 332 (443)
Q Consensus 332 ~ 332 (443)
+
T Consensus 267 k 267 (270)
T KOG0122|consen 267 K 267 (270)
T ss_pred C
Confidence 6
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=99.10 E-value=2.4e-10 Score=117.76 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=70.4
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChH-HHHHHHHH-hcccccCCcceeec
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEA-EGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~-e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
......+||||||++.+|+++|..+|..||.|.+|.|++..+ +|||||+|.... .++.+|+. |||..+.|+.|+|.
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 344568999999999999999999999999999999995544 999999999751 46889998 99999999999999
Q ss_pred CCCC
Q 013446 330 PSKT 333 (443)
Q Consensus 330 ~S~~ 333 (443)
.++.
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8753
No 79
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=2.2e-10 Score=120.60 Aligned_cols=171 Identities=23% Similarity=0.318 Sum_probs=138.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcC-----------C-CeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhccccc
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGC-----------G-QVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTML 321 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~-----------G-~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l 321 (443)
...+.+||+++++.++++....+|..- | .+..+.+...++ |+|++|.+. +.|..++.+++..+
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~n----fa~ie~~s~-~~at~~~~~~~~~f 247 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKN----FAFIEFRSI-SEATEAMALDGIIF 247 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccccc----ceeEEecCC-Cchhhhhcccchhh
Confidence 356899999999999999999998742 2 366777766554 999999999 99999999999999
Q ss_pred CCcceeecCCCCCcCCCCCC--------CCCCC-cccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-
Q 013446 322 GFYPVRVLPSKTAIAPVNPT--------FLPRT-EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY- 391 (443)
Q Consensus 322 ~Gr~I~V~~S~~~~~p~~~~--------~~~~~-~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~- 391 (443)
.|.++++...........-. +.... .........+|+|++||..+++..+.++.+. ||.++...+..|.
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~-fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS-FGPLKAFRLVKDSA 326 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh-cccchhheeecccc
Confidence 99999886543332211100 00111 1112345679999999999999999999998 9999999998886
Q ss_pred -CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 392 -HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 392 -~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
+.++||||.+|.+..-...|+. |||+.+++..|+|..|-
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 6899999999999999999999 99999999999998874
No 80
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.09 E-value=1.8e-10 Score=107.57 Aligned_cols=78 Identities=26% Similarity=0.355 Sum_probs=74.2
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
.....|.|-||.+-+|.++|+.+|++ ||.|-+|.|++|. ..++|||||.|....+|+.|++ |+|..|+|+.|+|+.
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFek-YG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEK-YGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHH-hCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 45689999999999999999999999 9999999999997 6899999999999999999999 999999999999998
Q ss_pred cC
Q 013446 429 SK 430 (443)
Q Consensus 429 Ak 430 (443)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 86
No 81
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=4.3e-10 Score=94.66 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=70.7
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
..++.|||+|||+.+|.++..++|.+ ||.|..|+|-.. ...+|-|||.|++..+|.+|++ |+|.++.++.|+|-|-+
T Consensus 16 evnriLyirNLp~~ITseemydlFGk-yg~IrQIRiG~~-k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGK-YGTIRQIRIGNT-KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhc-ccceEEEEecCc-cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 45689999999999999999999999 999999999444 3568999999999999999999 99999999999998865
Q ss_pred C
Q 013446 431 T 431 (443)
Q Consensus 431 ~ 431 (443)
+
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 4
No 82
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=1.9e-11 Score=111.99 Aligned_cols=75 Identities=25% Similarity=0.391 Sum_probs=71.7
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
+.=|||+|||+.+|+.||.-.|++ ||+|..|.+++|. |+++||||+.|++..+..-|+. |||..|.||.|+|++.
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSq-yGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQ-YGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeec-cCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 468999999999999999999999 9999999999987 8999999999999999999998 9999999999999875
No 83
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.08 E-value=1.2e-08 Score=102.52 Aligned_cols=174 Identities=17% Similarity=0.153 Sum_probs=133.9
Q ss_pred cCCCcEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~-tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
..+++.+.|.+|... ++-+.|..+|..||.|+.|++++.+. |.|.|++.+. .+.++|+. ||+..+.|.+|.|..
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamVemgd~-~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMVEMGDA-YAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEEEcCcH-HHHHHHHHHhccCccccceEEEee
Confidence 446789999999976 78999999999999999999997664 8999999999 99999999 999999999999999
Q ss_pred CCCCcCC-CCC--------CCC------------CC--CcccccccceeeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEE
Q 013446 331 SKTAIAP-VNP--------TFL------------PR--TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLR 386 (443)
Q Consensus 331 S~~~~~p-~~~--------~~~------------~~--~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG-~V~~vr 386 (443)
|+..... ..+ ++. |. ....-..++.+|+.-|.|..+||+.|.++|.. -+ ...+++
T Consensus 360 SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ne-k~v~~~svk 438 (494)
T KOG1456|consen 360 SKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNE-KDVPPTSVK 438 (494)
T ss_pred ccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhh-cCCCcceEE
Confidence 8775322 211 110 00 01112446788999999999999999999987 34 245566
Q ss_pred EeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCe------eeEEeecCC
Q 013446 387 LLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL------PIRVSPSKT 431 (443)
Q Consensus 387 I~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr------~L~V~~Ak~ 431 (443)
+..-+.....-+.+||++.++|..||. ||...+.+. .|++.|+.+
T Consensus 439 vFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 439 VFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred eecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 644333333468999999999999999 999888764 566666543
No 84
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=3.7e-10 Score=107.39 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=70.6
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak 430 (443)
.-++|||+||+..++.++|++.|++ ||+|....|+.|+ +++||||||+|.+.++|.+|+.--+-.|+||+-.+.+|-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeq-fGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQ-FGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHH-hCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 4589999999999999999999999 9999999998887 799999999999999999999844568999999998875
Q ss_pred C
Q 013446 431 T 431 (443)
Q Consensus 431 ~ 431 (443)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 85
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=9.1e-10 Score=82.70 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=50.0
Q ss_pred HHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 371 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 371 L~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
|.++|++ ||+|..+.+..+. +++|||+|.+.++|.+|+. |||..++|++|+|+||
T Consensus 1 L~~~f~~-fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTT-TS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCC-cccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999 9999999996654 6899999999999999999 9999999999999996
No 86
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=5.5e-10 Score=98.08 Aligned_cols=77 Identities=23% Similarity=0.276 Sum_probs=71.9
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
.-...|||.++..++|+++|.+.|.. ||+|+.+.+-.|. |..+|||+|+|++.++|++|+. +||..|.|+.|.|.|
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhh-cccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34578999999999999999999999 9999999887665 7899999999999999999999 999999999999999
Q ss_pred c
Q 013446 429 S 429 (443)
Q Consensus 429 A 429 (443)
+
T Consensus 149 ~ 149 (170)
T KOG0130|consen 149 C 149 (170)
T ss_pred E
Confidence 7
No 87
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=6.3e-10 Score=108.80 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=72.6
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
..+-+||||+-|+.+|+|..|++.|..||.|..|+|+.|+ ++++|||||+|.++ .+..+|.+ ..|..|+|+.|.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~e-rdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHE-RDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccH-HHHHHHHHhccCceecCcEEEEE
Confidence 3466999999999999999999999999999999999997 45899999999999 89899988 89999999999998
Q ss_pred CCC
Q 013446 330 PSK 332 (443)
Q Consensus 330 ~S~ 332 (443)
+-.
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 754
No 88
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.03 E-value=1.5e-09 Score=82.89 Aligned_cols=72 Identities=44% Similarity=0.641 Sum_probs=65.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 258 tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~-~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
+|+|+|||..+++++|.++|..+|.|..+.+..++. .++|+|||+|.+. ++|..|+. +++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~-~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDE-EDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCH-HHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999997664 4589999999999 99999999 999989999998764
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.02 E-value=1.1e-09 Score=82.81 Aligned_cols=68 Identities=38% Similarity=0.580 Sum_probs=61.6
Q ss_pred EcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 261 VSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 261 VgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
|+|||..+++++|+++|..||.|..+.+..++ ..++|||||+|.+. ++|..|+. +++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~-~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESE-EDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCH-HHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999998765 35689999999999 99999998 89999999988763
No 90
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=9.6e-10 Score=107.55 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=74.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
.+-+||||.-|++.+++..|+..|+. ||.|+.|+|+.|. ++++|||||+|++..+...|.. .+|..|+|++|.|++
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~-YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEK-YGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHh-cCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 44589999999999999999999999 9999999999996 8999999999999999999999 999999999999998
Q ss_pred cCC
Q 013446 429 SKT 431 (443)
Q Consensus 429 Ak~ 431 (443)
-..
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 653
No 91
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.00 E-value=5.6e-10 Score=104.29 Aligned_cols=79 Identities=25% Similarity=0.369 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
...+|.|-||.+-||-++|..+|++||.|.+|.|..|+-+ ++|||||.|... .+|+.|++ |+|.+|+|+.|.|+++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k-~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDK-RDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeec-chHHHHHHhhcceeeccceeeehhh
Confidence 4589999999999999999999999999999999999854 799999999999 99999999 9999999999999987
Q ss_pred CCC
Q 013446 332 KTA 334 (443)
Q Consensus 332 ~~~ 334 (443)
+-.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 644
No 92
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=2e-09 Score=90.63 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=69.9
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
++..+-|||.|||+++|.|+..++|.+||.|..|+|-..++ .+|.|||.|++. .+|.+|++ |+|..+.++.+.|.+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~-TrGTAFVVYedi-~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE-TRGTAFVVYEDI-FDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC-cCceEEEEehHh-hhHHHHHHHhcccccCCceEEEEec
Confidence 34568999999999999999999999999999999865543 469999999999 99999999 9999999999999876
No 93
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=8.9e-11 Score=107.67 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.++.=|||||||++.||.+|.-+|++||+|++|.+++|+++ |+||||+.|.+. .+...|+. |||..+.|+.|+|.+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQ-RSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQ-RSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCc-cceEEEEeccCCceecceeEEeee
Confidence 46788999999999999999999999999999999999965 799999999999 89888998 999999999999988
Q ss_pred CCCCcCC
Q 013446 331 SKTAIAP 337 (443)
Q Consensus 331 S~~~~~p 337 (443)
......|
T Consensus 112 v~~Yk~p 118 (219)
T KOG0126|consen 112 VSNYKKP 118 (219)
T ss_pred cccccCC
Confidence 6544433
No 94
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.94 E-value=2.6e-09 Score=107.46 Aligned_cols=172 Identities=20% Similarity=0.216 Sum_probs=127.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhc---C-CCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVG---C-GQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~---~-G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
.-.|-.++||+++|+.++.++|.+ . |..+.+.++..+ ++..|-|||.|..+ +.|+.|+..+...++.+.|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e-e~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE-EDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH-HHHHHHHHHHHHHHhHHHHHHHH
Confidence 345667899999999999999963 2 355667666654 56789999999999 99999999888888888888766
Q ss_pred CCCC-------------cCCCC-CCCC---CCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCC-ceEE--EEEecc
Q 013446 331 SKTA-------------IAPVN-PTFL---PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYR--LRLLGD 390 (443)
Q Consensus 331 S~~~-------------~~p~~-~~~~---~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG-~V~~--vrI~~d 390 (443)
|..+ ..+.. .... +...-........|.+++||+++|.+||.++|.. |- .|.. |.+..+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flgd-Fa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGD-FATDIRFQGVHMVLN 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHH-HhhhcccceeEEEEc
Confidence 5432 11110 0111 1111122223578999999999999999999998 55 3443 555544
Q ss_pred -CCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 391 -YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 391 -~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
.|+..|-|||+|.+.++|.+|.. ++.+...+|.|.|-.+
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 48999999999999999999998 8877777888887554
No 95
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.92 E-value=2e-09 Score=112.49 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=72.9
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
..|||+|||+++++++|.++|+. .|.|.++++..|. |+.+||||++|.+.++|..|+. |||..+.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 79999999999999999999999 7999999999887 8999999999999999999999 999999999999999864
No 96
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=8.4e-10 Score=120.54 Aligned_cols=164 Identities=17% Similarity=0.272 Sum_probs=138.9
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecC-CCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-PNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~d-k~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
....++|||+|||+..+++.+|+..|..+|.|.+|.|... .++...|+||.|.+. +.+-.|+. +.+..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~-dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNT-DMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhcc-ccCcccchhhcCCccccCccccc
Confidence 3457899999999999999999999999999999998765 355667999999999 88888876 88888876666665
Q ss_pred CCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHH
Q 013446 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAI 409 (443)
Q Consensus 330 ~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~ 409 (443)
+.. .....++.+++++|+..+....|...|.. ||.|..|.+ .+..-||+|.|.+...|+
T Consensus 447 lG~----------------~kst~ttr~~sgglg~w~p~~~l~r~fd~-fGpir~Idy----~hgq~yayi~yes~~~aq 505 (975)
T KOG0112|consen 447 LGQ----------------PKSTPTTRLQSGGLGPWSPVSRLNREFDR-FGPIRIIDY----RHGQPYAYIQYESPPAAQ 505 (975)
T ss_pred ccc----------------cccccceeeccCCCCCCChHHHHHHHhhc-cCcceeeec----ccCCcceeeecccCccch
Confidence 542 12345689999999999999999999999 999998766 445569999999999999
Q ss_pred HHHh-hCCceeCC--eeeEEeecCCCCCCCC
Q 013446 410 AALN-CSGVVLGS--LPIRVSPSKTPVRPRA 437 (443)
Q Consensus 410 ~Al~-lnG~~l~G--r~L~V~~Ak~~~~~~~ 437 (443)
.|+. |.|..|+| ++|+|.|+.++.+++.
T Consensus 506 ~a~~~~rgap~G~P~~r~rvdla~~~~~~Pq 536 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPRRLRVDLASPPGATPQ 536 (975)
T ss_pred hhHHHHhcCcCCCCCcccccccccCCCCChh
Confidence 9999 99999987 6899999998777654
No 97
>smart00361 RRM_1 RNA recognition motif.
Probab=98.89 E-value=7.7e-09 Score=81.54 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=51.2
Q ss_pred HHHHHHHhh----hcCCceEEEE-EeccC----CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 368 QADVKLFFE----SVCGEVYRLR-LLGDY----HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 368 eedL~elF~----~~fG~V~~vr-I~~d~----~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
+++|+++|+ . ||.|.++. ++.+. ++++|||||+|.+.++|.+|+. |||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 577888888 8 99999984 54443 6789999999999999999999 99999999999863
No 98
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=1.2e-08 Score=104.58 Aligned_cols=113 Identities=24% Similarity=0.273 Sum_probs=87.2
Q ss_pred HHHHHHHH-hcccccCCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEE
Q 013446 308 EGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 386 (443)
Q Consensus 308 e~A~~Al~-lng~~l~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vr 386 (443)
+++..+|. -.|. .|.|.-..+....+.|. -+.......+-|||+.||..+.+++|.-+|++ -|+|-.+|
T Consensus 45 eaal~al~E~tgy-----~l~ve~gqrk~ggPpP~----weg~~p~~G~EVfvGkIPrD~~EdeLvplfEk-iG~I~elR 114 (506)
T KOG0117|consen 45 EAALKALLERTGY-----TLVVENGQRKYGGPPPG----WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEK-IGKIYELR 114 (506)
T ss_pred HHHHHHHHHhcCc-----eEEEeccccccCCCCCc----ccCCCCCCCceEEecCCCccccchhhHHHHHh-ccceeeEE
Confidence 77777776 4443 44555544433333221 11222355689999999999999999999999 69999999
Q ss_pred EeccC--CCCceEEEEEeCCHHHHHHHHh-hCCcee-CCeeeEEeecC
Q 013446 387 LLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVL-GSLPIRVSPSK 430 (443)
Q Consensus 387 I~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l-~Gr~L~V~~Ak 430 (443)
|+.|+ |.+||||||.|.+.++|+.|+. ||+..| -|+.|.|..+.
T Consensus 115 LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 115 LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 99985 8999999999999999999999 999876 47888887764
No 99
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=2.7e-09 Score=98.22 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=69.1
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
..++|||+|||..+.++||.++|.+ ||.|..|.+...+ ..-.||||+|+++.+|..|+. -+|..++|++|+|+++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyK-yg~i~~ieLK~r~-g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYK-YGRIREIELKNRP-GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhh-hcceEEEEeccCC-CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 4589999999999999999999999 9999999883332 334799999999999999999 999999999999999864
Q ss_pred C
Q 013446 432 P 432 (443)
Q Consensus 432 ~ 432 (443)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 3
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.86 E-value=4.3e-09 Score=110.00 Aligned_cols=76 Identities=36% Similarity=0.507 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
+.|||||+|+++++++|.++|+..|.|.+++++.|+. +++||||++|.+. +.+..|++ |||..+.|++|+|.|...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~-~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDE-ETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCch-hhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999999999999999885 4699999999999 99999999 999999999999998643
No 101
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.80 E-value=1.2e-08 Score=76.48 Aligned_cols=55 Identities=33% Similarity=0.479 Sum_probs=49.5
Q ss_pred HHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 273 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 273 L~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
|.++|++||.|.++.+.+++ +++|||+|.+. ++|..|+. |+|..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~-~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASV-EDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSH-HHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCH-HHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998665 47999999999 99999999 9999999999999874
No 102
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.5e-09 Score=99.79 Aligned_cols=79 Identities=33% Similarity=0.434 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
...+|||||+|..++||.-|...|-+||.|.+|.+..|-. +.+|||||+|... |+|.+|+. ||+..+.|+.|+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~a-EDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEA-EDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeecc-chhHHHhhcCchhhhcceeEEEee
Confidence 3569999999999999999999999999999999987763 4689999999999 99999999 999999999999998
Q ss_pred CCC
Q 013446 331 SKT 333 (443)
Q Consensus 331 S~~ 333 (443)
++.
T Consensus 87 AkP 89 (298)
T KOG0111|consen 87 AKP 89 (298)
T ss_pred cCC
Confidence 754
No 103
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=9.5e-09 Score=99.32 Aligned_cols=96 Identities=25% Similarity=0.363 Sum_probs=80.3
Q ss_pred CcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEE
Q 013446 323 FYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVE 401 (443)
Q Consensus 323 Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVe 401 (443)
.|+|.|+++.. +.+....++|||+-|.+.-.|+|++.+|.+ ||.|..|.+.+.. +.+||||||.
T Consensus 2 nrpiqvkpads--------------esrg~~drklfvgml~kqq~e~dvrrlf~p-fG~~~e~tvlrg~dg~sKGCAFVK 66 (371)
T KOG0146|consen 2 NRPIQVKPADS--------------ESRGGDDRKLFVGMLNKQQSEDDVRRLFQP-FGNIEECTVLRGPDGNSKGCAFVK 66 (371)
T ss_pred CCCcccccccc--------------ccCCccchhhhhhhhcccccHHHHHHHhcc-cCCcceeEEecCCCCCCCCceEEE
Confidence 46777777642 223334589999999999999999999999 9999999998877 7999999999
Q ss_pred eCCHHHHHHHHh-hCC-ceeC--CeeeEEeecCCCC
Q 013446 402 FVMAESAIAALN-CSG-VVLG--SLPIRVSPSKTPV 433 (443)
Q Consensus 402 F~t~e~A~~Al~-lnG-~~l~--Gr~L~V~~Ak~~~ 433 (443)
|.+..+|..||+ |+| ..+- .-.|+|.|+++..
T Consensus 67 f~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdk 102 (371)
T KOG0146|consen 67 FSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDK 102 (371)
T ss_pred eccchHHHHHHHHhcccccCCCCccceEEEeccchH
Confidence 999999999999 998 3343 3589999998763
No 104
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=8.4e-09 Score=90.70 Aligned_cols=77 Identities=23% Similarity=0.344 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
..+-.|||.++...+||++|.+.|..||+|..+.+.-|.-+ .+|||+|+|.+. +.|++|+. +||..+.|..|.|.|
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~-keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETL-KEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhH-HHHHHHHHhccchhhhCCceeEEE
Confidence 34578999999999999999999999999999999888766 599999999999 99999999 999999999999999
Q ss_pred C
Q 013446 331 S 331 (443)
Q Consensus 331 S 331 (443)
+
T Consensus 149 ~ 149 (170)
T KOG0130|consen 149 C 149 (170)
T ss_pred E
Confidence 7
No 105
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=2.3e-09 Score=101.04 Aligned_cols=130 Identities=25% Similarity=0.353 Sum_probs=111.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
..+||||+|+...++|+-|.|+|-.-|+|..+.|..+++....||||+|.++ -++..|+. +||..+.+.++++++-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E-~sv~~a~~L~ng~~l~~~e~q~~~r-- 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNE-NSVQLAGQLENGDDLEEDEEQRTLR-- 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccc-cchhhhhhhcccchhccchhhcccc--
Confidence 4599999999999999999999999999999999877765444999999999 99999999 8999999888887653
Q ss_pred CcCCCCCCCCCCCcccccccceeeeeeC----CCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHH
Q 013446 334 AIAPVNPTFLPRTEDEREMCARTIYCTN----IDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESA 408 (443)
Q Consensus 334 ~~~p~~~~~~~~~~~~~~~~~~tIfV~N----Lp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A 408 (443)
+++ |+..++.+.+.+.|+. -|.+..+++..+. +.++.++|+.+....+.
T Consensus 85 -------------------------~G~shapld~r~~~ei~~~v~s~-a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 85 -------------------------CGNSHAPLDERVTEEILYEVFSQ-AGPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred -------------------------cCCCcchhhhhcchhhheeeecc-cCCCCCccccccccCCccCccchhhhhhhcC
Confidence 333 6677888888999998 7999999998876 68899999999887777
Q ss_pred HHHHh
Q 013446 409 IAALN 413 (443)
Q Consensus 409 ~~Al~ 413 (443)
-.++.
T Consensus 139 P~~~~ 143 (267)
T KOG4454|consen 139 PFALD 143 (267)
T ss_pred cHHhh
Confidence 77765
No 106
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.69 E-value=2.8e-08 Score=97.15 Aligned_cols=71 Identities=23% Similarity=0.391 Sum_probs=67.0
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCCC
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~~ 432 (443)
-++||+|||.++++.+|+.+|++ ||+|..|.|++ +||||+.++...|..|+. |+|..|+|..|.|+-++..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~-ygkVlECDIvK------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQ-YGKVLECDIVK------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHh-hCceEeeeeec------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 58999999999999999999999 99999999975 589999999999999998 9999999999999998765
No 107
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.69 E-value=3.6e-08 Score=93.51 Aligned_cols=76 Identities=26% Similarity=0.441 Sum_probs=69.5
Q ss_pred eeeeeeCCCCCCCHHHHHH----HhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 355 RTIYCTNIDKKVTQADVKL----FFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~e----lF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
.||||.||+..+..++|+. +|++ ||+|..|...+. .+.||.|||.|.+.+.|-+|+. |+|..+.|++++++||
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsq-fG~ildI~a~kt-~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQ-FGKILDISAFKT-PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHh-hCCeEEEEecCC-CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 4999999999999999988 9999 999999877544 5789999999999999999999 9999999999999999
Q ss_pred CCC
Q 013446 430 KTP 432 (443)
Q Consensus 430 k~~ 432 (443)
+..
T Consensus 88 ~s~ 90 (221)
T KOG4206|consen 88 KSD 90 (221)
T ss_pred cCc
Confidence 753
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=98.68 E-value=5.8e-08 Score=76.52 Aligned_cols=58 Identities=26% Similarity=0.281 Sum_probs=50.5
Q ss_pred HHHHHHHhh----cCCCeeEEE-EecCC----CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 270 EEQLAALFV----GCGQVVDCR-ICGDP----NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 270 eeeL~e~F~----~~G~I~~v~-i~~dk----~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
+++|.++|+ +||.|.++. +..++ +.++|||||+|.+. ++|.+|+. |+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~-~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERS-EDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCH-HHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999985 55544 45799999999999 99999999 9999999999876
No 109
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.68 E-value=4e-08 Score=100.41 Aligned_cols=75 Identities=27% Similarity=0.264 Sum_probs=70.7
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
+.+||+|||+.+...||+++|...-|+|.+|.++.|. +++||||.|+|+++|.+++|++ ||.+.+.||+|+|.--
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 5699999999999999999999878999999999987 8999999999999999999999 9999999999999653
No 110
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=5.9e-08 Score=96.87 Aligned_cols=76 Identities=22% Similarity=0.432 Sum_probs=69.3
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh--hCCceeCCeeeEEee
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN--CSGVVLGSLPIRVSP 428 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~--lnG~~l~Gr~L~V~~ 428 (443)
+...++|||++|-..+++.||++.|.+ ||+|.++++.. .+++|||+|.++++|+.|.. +|.+.++|++|+|.|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~~----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRILP----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhh-cCCeeeEEeec----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 345689999999999999999999999 99999999954 35799999999999999997 888999999999999
Q ss_pred cCC
Q 013446 429 SKT 431 (443)
Q Consensus 429 Ak~ 431 (443)
+.+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 987
No 111
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.64 E-value=2.8e-08 Score=99.21 Aligned_cols=172 Identities=24% Similarity=0.252 Sum_probs=133.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEec--CCCCCceEEEEEEcChHHHHHHHHHhccc-ccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG--DPNSVLRFAFIEFTDEAEGARAALNLAGT-MLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~--dk~~skG~aFVeF~t~~e~A~~Al~lng~-~l~Gr~I~V~~ 330 (443)
....++|++++...+.+.++..++..+|....+.+.. +...++|++.+.|... +.+..|+.+.+. ...++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~k-s~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGK-SQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccH-HHHHHHHHhhhccccccccccCcc
Confidence 4578999999999999998888999999776665543 4456799999999999 999999997774 55555555444
Q ss_pred CCCCc-CCCCCCCCCCCcccccccceeee-eeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHH
Q 013446 331 SKTAI-APVNPTFLPRTEDEREMCARTIY-CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAE 406 (443)
Q Consensus 331 S~~~~-~p~~~~~~~~~~~~~~~~~~tIf-V~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e 406 (443)
..... .+.++ ..........+++ ++|+++.+++++|+..|.. +|.|..++++.+. +.++|||+|+|....
T Consensus 165 ~~~~~~~~~n~-----~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 165 NTRRGLRPKNK-----LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred cccccccccch-----hcccccCccccceeecccccccchHHHhhhccC-cCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 32221 01110 1111223345666 9999999999999999998 9999999998776 689999999999999
Q ss_pred HHHHHHhhCCceeCCeeeEEeecCCC
Q 013446 407 SAIAALNCSGVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 407 ~A~~Al~lnG~~l~Gr~L~V~~Ak~~ 432 (443)
.+..++..+...++++++++.+.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 239 SKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred hHHHHhhcccCcccCcccccccCCCC
Confidence 99999877678899999999997653
No 112
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.60 E-value=7.1e-08 Score=104.33 Aligned_cols=76 Identities=29% Similarity=0.444 Sum_probs=71.2
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
..+++||||++|+..+++.||..+|+. ||+|.+|.+ ..++|+|||.+..+.+|.+|+. |++..+.++.|+|.||
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~fee-fGeiqSi~l----i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEE-FGEIQSIIL----IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHh-cccceeEee----ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 457899999999999999999999999 999999988 4568999999999999999999 9999999999999998
Q ss_pred CC
Q 013446 430 KT 431 (443)
Q Consensus 430 k~ 431 (443)
-.
T Consensus 493 ~g 494 (894)
T KOG0132|consen 493 VG 494 (894)
T ss_pred cc
Confidence 53
No 113
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.57 E-value=2e-07 Score=93.80 Aligned_cols=157 Identities=19% Similarity=0.231 Sum_probs=103.0
Q ss_pred CCCCcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhccccCCCC
Q 013446 157 NGGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFG 236 (443)
Q Consensus 157 ~~~~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f~ 236 (443)
-++++|.++++.|.+-|++||.+.+..+--..++.-. .+++..-|.-+... ...-. .+..--
T Consensus 11 iGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rs-----rgFgfv~f~~~~~v--------~~vl~-----~~~h~~ 72 (311)
T KOG4205|consen 11 IGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRS-----RGFGFVTFATPEGV--------DAVLN-----ARTHKL 72 (311)
T ss_pred ecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCc-----ccccceecCCCcch--------heeec-----cccccc
Confidence 3568999999999999999999988666444333211 11111111111000 00000 000000
Q ss_pred CCCCCCC-CCcccccc----ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHH
Q 013446 237 QGKRRMN-SRTSLAQR----EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEG 309 (443)
Q Consensus 237 ~g~~r~~-~~~~~~~~----~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~ 309 (443)
.|+.... ....+... .......+|||+||.+++++++++.|.+||.|..+.++.|..+ ++||+||.|.++ ++
T Consensus 73 dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e-~s 151 (311)
T KOG4205|consen 73 DGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSE-DS 151 (311)
T ss_pred CCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccc-cc
Confidence 1111000 00000000 1114569999999999999999999999999999988888754 699999999999 99
Q ss_pred HHHHHHhcccccCCcceeecCCC
Q 013446 310 ARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 310 A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
+++++....+.|.|+.+.|..+.
T Consensus 152 Vdkv~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 152 VDKVTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred cceecccceeeecCceeeEeecc
Confidence 99999999999999999998763
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=1.1e-07 Score=94.88 Aligned_cols=79 Identities=20% Similarity=0.375 Sum_probs=70.9
Q ss_pred ccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH--hcccccCCccee
Q 013446 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN--LAGTMLGFYPVR 327 (443)
Q Consensus 250 ~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~--lng~~l~Gr~I~ 327 (443)
..+|....||||++|...++|.+|+++|-+||+|.++.+...+ ++|||+|.+. ++|+.|.+ ++..++.|..|.
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR-~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTR-EAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhh-HHHHHHHHhhcceeeecceEEE
Confidence 4466778999999999999999999999999999999998665 5999999999 99999887 787889999999
Q ss_pred ecCCCC
Q 013446 328 VLPSKT 333 (443)
Q Consensus 328 V~~S~~ 333 (443)
|.|++.
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999864
No 115
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.55 E-value=6e-08 Score=93.35 Aligned_cols=165 Identities=20% Similarity=0.286 Sum_probs=123.0
Q ss_pred CCcEEEEcCCCCCCcHHH-H--HHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 255 IRRTVYVSDIDQQVTEEQ-L--AALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeee-L--~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
.-..++++++-..+..+- | ...|+.+-.+...+++++. +.-.+++|+.|... .+-.++-. -++..++-.+|++.
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s-~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKAS-DALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchh-hhhhhhccccccccccCcceeec
Confidence 346677777776666554 3 5677777766666676654 55689999999988 77666665 56666666665543
Q ss_pred CCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHH
Q 013446 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAES 407 (443)
Q Consensus 330 ~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~ 407 (443)
-.. .. ..+ ...+......+|||+.|..+++++-|-..|.+ |-.....++++|. ++++||+||.|.+..+
T Consensus 174 ~gt--sw-edP-----sl~ew~~~DfRIfcgdlgNevnd~vl~raf~K-fpsf~~akviRdkRTgKSkgygfVSf~~pad 244 (290)
T KOG0226|consen 174 AGT--SW-EDP-----SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAKVIRDKRTGKSKGYGFVSFRDPAD 244 (290)
T ss_pred ccc--cc-CCc-----ccccCccccceeecccccccccHHHHHHHHHh-ccchhhccccccccccccccceeeeecCHHH
Confidence 221 10 011 11223345689999999999999999999999 8877778888886 8999999999999999
Q ss_pred HHHHHh-hCCceeCCeeeEEeec
Q 013446 408 AIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 408 A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
+..|+. |+|.+++.++|++.-+
T Consensus 245 ~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 245 YVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HHHHHHhhcccccccchhHhhhh
Confidence 999999 9999999999988543
No 116
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.51 E-value=9.1e-07 Score=91.97 Aligned_cols=172 Identities=23% Similarity=0.274 Sum_probs=122.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~-v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S 331 (443)
.....|-+.+||+.+|++||.++|+..-.+.. +.+..|. ..+.|-|||.|.+. +.|+.|+..+...|+.+-|.|-.|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sq-e~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQ-ESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCH-HHHHHHHHHHHHhhccceEEeehh
Confidence 35678999999999999999999997654444 4455555 45789999999999 999999997778888888887654
Q ss_pred CCC-----c-------C-CC--CC-------------------------------------C------C----------C
Q 013446 332 KTA-----I-------A-PV--NP-------------------------------------T------F----------L 343 (443)
Q Consensus 332 ~~~-----~-------~-p~--~~-------------------------------------~------~----------~ 343 (443)
... . . |. .. . + .
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 221 0 0 00 00 0 0 0
Q ss_pred CCC-----cc------cccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHH
Q 013446 344 PRT-----ED------EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAA 411 (443)
Q Consensus 344 ~~~-----~~------~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~A 411 (443)
+.. .. .-......++.++||+..+..+|..+|+. .....|.|-..+ ++.+|-|+|+|.|.++|..|
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFsp--l~p~~v~i~ig~dGr~TGEAdveF~t~edav~A 337 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSP--LNPYRVHIEIGPDGRATGEADVEFATGEDAVGA 337 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCC--CCceeEEEEeCCCCccCCcceeecccchhhHhh
Confidence 000 00 00111246788999999999999999997 344566664444 78999999999999999999
Q ss_pred HhhCCceeCCeeeEEee
Q 013446 412 LNCSGVVLGSLPIRVSP 428 (443)
Q Consensus 412 l~lnG~~l~Gr~L~V~~ 428 (443)
+.-++..++.+-|.+-.
T Consensus 338 mskd~anm~hrYVElFl 354 (510)
T KOG4211|consen 338 MGKDGANMGHRYVELFL 354 (510)
T ss_pred hccCCcccCcceeeecc
Confidence 98777777777666544
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=1.7e-08 Score=110.14 Aligned_cols=145 Identities=19% Similarity=0.167 Sum_probs=122.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEe--cCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC--GDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~--~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
...++||+||+..+.+++|...|..+|.+..+++. .+.+..+|+|+++|..+ +.+.+|+.+....+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~-~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKP-EHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecC-Cchhhhhhhhhhhhhh---------
Confidence 45789999999999999999999999877766655 34455689999999999 9999999954433322
Q ss_pred CCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHH
Q 013446 333 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAA 411 (443)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~A 411 (443)
...++|+|.|+..|.++++.++.. +|.+++++++... |+++|.|+|.|.+..+|..+
T Consensus 736 ---------------------K~~v~i~g~pf~gt~e~~k~l~~~-~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~ 793 (881)
T KOG0128|consen 736 ---------------------KISVAISGPPFQGTKEELKSLASK-TGNVTSLRLVTVRAGKPKGKARVDYNTEADASRK 793 (881)
T ss_pred ---------------------hhhhheeCCCCCCchHHHHhhccc-cCCccccchhhhhccccccceeccCCCcchhhhh
Confidence 147889999999999999999999 8999999887665 89999999999999999999
Q ss_pred Hh-hCCceeCCeeeEEeecCC
Q 013446 412 LN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 412 l~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
.. .....+.-+.+.|..++|
T Consensus 794 ~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 794 VASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred cccchhhhhhhcCccccccCC
Confidence 98 777777777788877665
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.3e-07 Score=92.86 Aligned_cols=77 Identities=25% Similarity=0.484 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+...|||-.|++-||.++|.-+|+.||.|.+|.+++|..+ |..||||+|.+. +++++|.- |++..|+.+.|+|.+|
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~-escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENK-ESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecch-hhHHHHHhhhcceeeccceEEeehh
Confidence 5589999999999999999999999999999999999865 689999999999 99999987 9999999999999987
Q ss_pred C
Q 013446 332 K 332 (443)
Q Consensus 332 ~ 332 (443)
.
T Consensus 317 Q 317 (479)
T KOG0415|consen 317 Q 317 (479)
T ss_pred h
Confidence 4
No 119
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.43 E-value=4.7e-07 Score=98.15 Aligned_cols=74 Identities=26% Similarity=0.370 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
..++|||||.|+..++|.+|..+|+.||.|.+|.++.. +|||||.+... .+|.+|+. |+...+.++.|+|.|+-
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~----R~cAfI~M~~R-qdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP----RGCAFIKMVRR-QDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC----CceeEEEEeeh-hHHHHHHHHHhcccccceeeEEeeec
Confidence 46899999999999999999999999999999988744 57999999999 99999998 99999999999999984
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=3.7e-07 Score=91.42 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=73.2
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
+...|||=-|.+-+|++||.-+|+. ||.|.+|.+++|. |.+-.||||+|.+.+++++|.- |.+..|++++|+|.|+
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSr-FG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSR-FGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhh-cccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 4578999889999999999999999 9999999999986 6788899999999999999998 9999999999999998
Q ss_pred CCC
Q 013446 430 KTP 432 (443)
Q Consensus 430 k~~ 432 (443)
+.-
T Consensus 317 QSV 319 (479)
T KOG0415|consen 317 QSV 319 (479)
T ss_pred hhh
Confidence 654
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.35 E-value=9.9e-07 Score=82.81 Aligned_cols=79 Identities=23% Similarity=0.273 Sum_probs=69.8
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
.....+++..+|..+.+..+..+|.+..|.|..+++.++. |.++|||||+|++.+.|.-|-+ ||+..+.++.|.+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 3456889999999999999999999944788888887765 8999999999999999999999 999999999998876
Q ss_pred cC
Q 013446 429 SK 430 (443)
Q Consensus 429 Ak 430 (443)
=.
T Consensus 127 mp 128 (214)
T KOG4208|consen 127 MP 128 (214)
T ss_pred eC
Confidence 43
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.33 E-value=1.2e-06 Score=82.22 Aligned_cols=79 Identities=25% Similarity=0.334 Sum_probs=68.7
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcC-CCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCccee
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVR 327 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~-G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~ 327 (443)
......-+||..+|..+.+.++..+|.++ |.+..+++.+.+ ++|+|||||+|.++ +-|..|-+ ||++.|.|+-|.
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~-eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESE-EVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccH-HHHHHHHHHhhhhhhhhheee
Confidence 44456789999999999999999999998 677888886766 45899999999999 99999888 999999999998
Q ss_pred ecCC
Q 013446 328 VLPS 331 (443)
Q Consensus 328 V~~S 331 (443)
+..-
T Consensus 124 c~vm 127 (214)
T KOG4208|consen 124 CHVM 127 (214)
T ss_pred eEEe
Confidence 8753
No 123
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.29 E-value=2.1e-06 Score=83.62 Aligned_cols=79 Identities=27% Similarity=0.357 Sum_probs=72.0
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...+|+|.|||+.++++||+++|.. ||.++.+-+..+. +.+.|.|-|.|...++|..|+. +||..++|++|++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~-~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAE-FGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHH-hccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3478999999999999999999999 9999999887776 8899999999999999999999 99999999999998765
Q ss_pred CC
Q 013446 431 TP 432 (443)
Q Consensus 431 ~~ 432 (443)
++
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 43
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.28 E-value=1.7e-06 Score=91.01 Aligned_cols=82 Identities=17% Similarity=0.277 Sum_probs=74.1
Q ss_pred ccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEE
Q 013446 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426 (443)
Q Consensus 350 ~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V 426 (443)
+....+.|+|.+|...+-..||+.+|++ ||+|...+++.+. .-.++|+||++.+..+|.+||+ |+-+.|.|+.|.|
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSK-yGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSK-YGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHH-hcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 3456789999999999999999999999 9999999998765 3568899999999999999999 9999999999999
Q ss_pred eecCCC
Q 013446 427 SPSKTP 432 (443)
Q Consensus 427 ~~Ak~~ 432 (443)
+.++..
T Consensus 480 EkaKNE 485 (940)
T KOG4661|consen 480 EKAKNE 485 (940)
T ss_pred eecccC
Confidence 999753
No 125
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.26 E-value=5e-06 Score=70.11 Aligned_cols=76 Identities=22% Similarity=0.219 Sum_probs=64.8
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhc-CCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeC----CeeeEE
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESV-CGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLG----SLPIRV 426 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~-fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~----Gr~L~V 426 (443)
+||.|+|||...|.++|.+++... .|....+.+|.|. +.+.|||||.|.+++.|..-.+ ++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999998864 3567778888886 5789999999999999999998 9997765 456777
Q ss_pred eecC
Q 013446 427 SPSK 430 (443)
Q Consensus 427 ~~Ak 430 (443)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8875
No 126
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.23 E-value=6.7e-06 Score=88.63 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=73.4
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-----CCCceEEEEEEcChHHHHHHHHH-hcccccCCcce
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-----NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPV 326 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-----~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I 326 (443)
+...++|||+||++.++++.|...|..||+|.+++|+... ...+-||||.|-+. .+|++|++ |+|..+.++++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR-~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNR-ADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhh-hhHHHHHHHhcceeeeeeee
Confidence 3457999999999999999999999999999999998533 23477999999999 99999999 99999999999
Q ss_pred eecCCCCCcCC
Q 013446 327 RVLPSKTAIAP 337 (443)
Q Consensus 327 ~V~~S~~~~~p 337 (443)
++.|++....|
T Consensus 250 K~gWgk~V~ip 260 (877)
T KOG0151|consen 250 KLGWGKAVPIP 260 (877)
T ss_pred eeccccccccC
Confidence 99998765333
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.22 E-value=1.3e-06 Score=84.39 Aligned_cols=80 Identities=18% Similarity=0.340 Sum_probs=72.7
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
.+.++..||+|+|..+++++-|...|.+|-.....++++|+ ++++||+||.|.+. .++..|+. |+|..++.++|++
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~p-ad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDP-ADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCH-HHHHHHHHhhcccccccchhHh
Confidence 46678999999999999999999999999988888899888 45899999999999 89999998 9999999999998
Q ss_pred cCCC
Q 013446 329 LPSK 332 (443)
Q Consensus 329 ~~S~ 332 (443)
+-+.
T Consensus 265 RkS~ 268 (290)
T KOG0226|consen 265 RKSE 268 (290)
T ss_pred hhhh
Confidence 8663
No 128
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=2.2e-06 Score=90.28 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=112.6
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.+...++|+|-|||..+++++|+++|+.||+|..++.-+.+ .|.+||+|-+. .+|+.|++ |++..+.|+.|+...
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~~~~~v~FyDv-R~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---RGIVFVEFYDV-RDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---CceEEEEEeeh-HhHHHHHHHHHHHHhhhhhhcCCC
Confidence 45678999999999999999999999999999997665444 48999999999 99999998 999999999988222
Q ss_pred CCCC-cCCC-CCCCC-----CCCcccc-cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEe
Q 013446 331 SKTA-IAPV-NPTFL-----PRTEDER-EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF 402 (443)
Q Consensus 331 S~~~-~~p~-~~~~~-----~~~~~~~-~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF 402 (443)
+... .... ...+. +...... .-....+++- |++..+..-++..+.- +|.+.. +......+ .-|++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~-~~~~~~-~~~~~~~h---q~~~~~ 220 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSV-DGSSPG-RETPLLNH---QRFVEF 220 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhc-cCcccc-ccccchhh---hhhhhh
Confidence 1110 0000 00000 0000000 0011233332 8888888555555554 787765 33221122 567888
Q ss_pred CCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 403 VMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 403 ~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
.+..++..+.. + |..+.+...++.++.+
T Consensus 221 ~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 221 ADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred ccccchhhcccCC-ceecCCCCceEEecCC
Confidence 88888855555 5 7888888888887765
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.19 E-value=9e-06 Score=82.37 Aligned_cols=166 Identities=21% Similarity=0.157 Sum_probs=111.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC----CCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGC----GQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~----G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
+...+-.++||+..++.+|..+|+-. |.+.-|.. -.....|++.|.|.+. |.-+.|++-+...++++.|.|..
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~--~qgrRnge~lvrf~d~-e~RdlalkRhkhh~g~ryievYk 135 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLN--AQGRRNGEALVRFVDP-EGRDLALKRHKHHMGTRYIEVYK 135 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeeh--hhhccccceEEEecCc-hhhhhhhHhhhhhccCCceeeec
Confidence 34566678999999999999999743 22222211 1233468999999999 99999999778888899999876
Q ss_pred CCCC----cCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhc---CCceEEEEEeccC-CCCceEEEEEe
Q 013446 331 SKTA----IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESV---CGEVYRLRLLGDY-HHSTRIAFVEF 402 (443)
Q Consensus 331 S~~~----~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~---fG~V~~vrI~~d~-~~srGfAFVeF 402 (443)
+... ..+.. ...-.........-.|..++||+.+|+.|+.++|.+. -|....|-++..+ |+.+|-|||.|
T Consensus 136 a~ge~f~~iagg~--s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 136 ATGEEFLKIAGGT--SNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred cCchhheEecCCc--cccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 5322 00000 0000000111223467789999999999999999632 2344555555554 89999999999
Q ss_pred CCHHHHHHHHhhCCceeCCeeeE
Q 013446 403 VMAESAIAALNCSGVVLGSLPIR 425 (443)
Q Consensus 403 ~t~e~A~~Al~lnG~~l~Gr~L~ 425 (443)
..+++|+.|+..|-..++-|-|.
T Consensus 214 a~ee~aq~aL~khrq~iGqRYIE 236 (508)
T KOG1365|consen 214 ACEEDAQFALRKHRQNIGQRYIE 236 (508)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999997554445444443
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.18 E-value=6e-07 Score=90.88 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=122.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC-----CceEEEEEEcChHHHHHHHHHhcccccCCcceeecCC
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-----VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~-----skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S 331 (443)
..|.|.||.+.+|.++++.+|..+|.|.++++++..+. ....|||-|.+. ..+..|-.|.++++-++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~-~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDS-QSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCC-cceeHHhhhccceeeeeeEEEEec
Confidence 47899999999999999999999999999999974432 368999999999 999999999998888888777653
Q ss_pred CCCcCCC-------------------CC------CC---------------CCCC--cccccccceeeeeeCCCCCCCHH
Q 013446 332 KTAIAPV-------------------NP------TF---------------LPRT--EDEREMCARTIYCTNIDKKVTQA 369 (443)
Q Consensus 332 ~~~~~p~-------------------~~------~~---------------~~~~--~~~~~~~~~tIfV~NLp~~~Tee 369 (443)
-....|. +. .. ++.. ....+...++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 2221111 00 00 0000 01123345789999999999999
Q ss_pred HHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCCe
Q 013446 370 DVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSL 422 (443)
Q Consensus 370 dL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr 422 (443)
++.+.|.. +|.|.+..+.-. ...-+|.++|....+.+.|+.++|..+.-+
T Consensus 167 e~~e~f~r-~Gev~ya~~ask--~~s~~c~~sf~~qts~~halr~~gre~k~q 216 (479)
T KOG4676|consen 167 ESGESFER-KGEVSYAHTASK--SRSSSCSHSFRKQTSSKHALRSHGRERKRQ 216 (479)
T ss_pred hhhhhhhh-cchhhhhhhhcc--CCCcchhhhHhhhhhHHHHHHhcchhhhhh
Confidence 99999998 899998877432 233477799999999999999888666533
No 131
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.17 E-value=4.5e-06 Score=89.93 Aligned_cols=84 Identities=17% Similarity=0.275 Sum_probs=74.1
Q ss_pred cccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-----CCCceEEEEEeCCHHHHHHHHh-hCCceeC
Q 013446 347 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-----HHSTRIAFVEFVMAESAIAALN-CSGVVLG 420 (443)
Q Consensus 347 ~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-----~~srGfAFVeF~t~e~A~~Al~-lnG~~l~ 420 (443)
-+.....++.+||+||+++++++.|...|+. ||.|.+++|+... ...+.||||-|.+..+|.+|+. |+|..+.
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGr-fgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGR-FGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcc-cCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 3333456789999999999999999999999 9999999987432 3577899999999999999999 9999999
Q ss_pred CeeeEEeecCC
Q 013446 421 SLPIRVSPSKT 431 (443)
Q Consensus 421 Gr~L~V~~Ak~ 431 (443)
++.+++-|+++
T Consensus 246 ~~e~K~gWgk~ 256 (877)
T KOG0151|consen 246 EYEMKLGWGKA 256 (877)
T ss_pred eeeeeeccccc
Confidence 99999999974
No 132
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.14 E-value=3.4e-06 Score=81.82 Aligned_cols=82 Identities=30% Similarity=0.450 Sum_probs=74.9
Q ss_pred ccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEe
Q 013446 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427 (443)
Q Consensus 350 ~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~ 427 (443)
.....+.+||+|+++.+|.+++...|+. ||.+..+.++.|. ++++||+||+|.+.+.+.+++.|+|..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 3456689999999999999999999998 9999999998876 579999999999999999999999999999999999
Q ss_pred ecCCC
Q 013446 428 PSKTP 432 (443)
Q Consensus 428 ~Ak~~ 432 (443)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98654
No 133
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.10 E-value=3.7e-06 Score=81.57 Aligned_cols=82 Identities=24% Similarity=0.346 Sum_probs=74.0
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHHhcccccCCcceeec
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVL 329 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~ 329 (443)
.+.+...+||+|+.+.+|-+++..+|+.||.|..+.+..|+. .++||+||+|.+. +.+..++.|+|..+.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~-~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSY-ELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccH-hhhHHHhhcCCcccccccceee
Confidence 455779999999999999999999999999999888888774 4799999999999 9999999999999999999998
Q ss_pred CCCCC
Q 013446 330 PSKTA 334 (443)
Q Consensus 330 ~S~~~ 334 (443)
+-+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 86554
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.06 E-value=9e-06 Score=85.72 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=72.4
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
...+++|||.+|+..|--.+|+.+|++||.|+-.+++..--+ .+.||||.+.+. +.|.+||. |+.+.|.|+.|.|.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts-~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTS-AEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecch-HHHHHHHHHhhhhhhcceeeeee
Confidence 456799999999999999999999999999999998865533 378999999999 99999999 99999999999998
Q ss_pred CCCCC
Q 013446 330 PSKTA 334 (443)
Q Consensus 330 ~S~~~ 334 (443)
.++..
T Consensus 481 kaKNE 485 (940)
T KOG4661|consen 481 KAKNE 485 (940)
T ss_pred ecccC
Confidence 87654
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.05 E-value=1.2e-05 Score=78.35 Aligned_cols=78 Identities=23% Similarity=0.287 Sum_probs=70.2
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~-~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
+...++|+|.||++.+++++|+++|..||.+..+.+..++. .+.|.|-|.|... ++|..|++ ++|..++|+++++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~-~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRR-DDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecch-HhHHHHHHHhcCcccCCceeeeEE
Confidence 33458999999999999999999999999999998888884 5899999999999 99999999 999889999988865
Q ss_pred C
Q 013446 331 S 331 (443)
Q Consensus 331 S 331 (443)
.
T Consensus 159 i 159 (243)
T KOG0533|consen 159 I 159 (243)
T ss_pred e
Confidence 4
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.04 E-value=8.8e-06 Score=85.00 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=67.4
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecCC
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak~ 431 (443)
.+|||+|||+.++..+|.++|.. ||.|+..+|.... ++..+||||+|.+..+++.|++.+-..+++++|.|+--++
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~-FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQ-FGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhh-cccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 45999999999999999999999 9999999886543 4444999999999999999999778999999999987655
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.02 E-value=8.2e-06 Score=85.26 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=64.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S 331 (443)
...+|||+|||.++++++|.++|+.||.|....|.... ++..+||||+|.+. +++..|+.-+-..++++.+.|..-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~-~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENA-AAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeec-chhhhhhhcCccccCCeeEEEEec
Confidence 34559999999999999999999999999887665422 33348999999999 999999997788899999999754
No 138
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.99 E-value=8.2e-06 Score=78.00 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=64.6
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
..+||++||+.+.++||..+|.. ||++..+.+. .||+||+|.+..+|..|+. +|+..|+|-+++|+|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~-yg~~~d~~mk------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKG-YGKIPDADMK------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhh-ccccccceee------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 47899999999999999999999 9999988772 3789999999999999999 999999999999999984
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=5.8e-06 Score=87.24 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=68.0
Q ss_pred CCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCee
Q 013446 345 RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP 423 (443)
Q Consensus 345 ~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~ 423 (443)
....+....+++|+|-|||..+++++|+.+|+. ||+|+.|+.- ...+|..||+|-+..+|+.|++ |++.++.|++
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir~t---~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIRET---PNKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHh-hcchhhhhcc---cccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 344556677899999999999999999999998 9999986542 3568899999999999999999 9999999999
Q ss_pred eE
Q 013446 424 IR 425 (443)
Q Consensus 424 L~ 425 (443)
|+
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 98
No 140
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.95 E-value=3.9e-05 Score=73.08 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=64.0
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEE-eccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeC---CeeeE
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL-LGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLG---SLPIR 425 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI-~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~---Gr~L~ 425 (443)
..+||||.+||..+...+|..+|.. |-.-....| ..+. ...+-+|||.|.+..+|.+|++ |||..++ +..|+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~-f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRR-FHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhcc-CCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 4689999999999999999999998 544444333 2222 2466799999999999999999 9999987 67899
Q ss_pred EeecCCC
Q 013446 426 VSPSKTP 432 (443)
Q Consensus 426 V~~Ak~~ 432 (443)
+++|+..
T Consensus 112 iElAKSN 118 (284)
T KOG1457|consen 112 IELAKSN 118 (284)
T ss_pred eeehhcC
Confidence 9999743
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.93 E-value=1.1e-06 Score=89.66 Aligned_cols=148 Identities=19% Similarity=0.254 Sum_probs=116.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcC--CCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccc-cCCcceeecCCC
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGC--GQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTM-LGFYPVRVLPSK 332 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~--G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~-l~Gr~I~V~~S~ 332 (443)
..+|++||++.++-.+|..+|... +.-..+.+ -.||+||.+.+. ..|.+|++ ++|.. +.|+++.|.++-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq-~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQ-QWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCch-hhhhhhHHhhchhhhhcCceeeccchh
Confidence 358999999999999999999743 11111111 148999999999 99999999 88855 789999988762
Q ss_pred CCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHH
Q 013446 333 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412 (443)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al 412 (443)
.+...++++-|+|+|+....+.|..+... ||.|..|....- ...+-..-|+|.+.+.+..|+
T Consensus 75 ----------------~kkqrsrk~Qirnippql~wevld~Ll~q-yg~ve~~eqvnt-~~etavvnvty~~~~~~~~ai 136 (584)
T KOG2193|consen 75 ----------------PKKQRSRKIQIRNIPPQLQWEVLDSLLAQ-YGTVENCEQVNT-DSETAVVNVTYSAQQQHRQAI 136 (584)
T ss_pred ----------------hHHHHhhhhhHhcCCHHHHHHHHHHHHhc-cCCHhHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 11233567999999999999999999998 999998865321 122233457899999999999
Q ss_pred h-hCCceeCCeeeEEeec
Q 013446 413 N-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 413 ~-lnG~~l~Gr~L~V~~A 429 (443)
. ++|..+....+++.|-
T Consensus 137 ~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 137 HKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhcchHhhhhhhhcccC
Confidence 9 9999999999999884
No 142
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.92 E-value=2.4e-05 Score=78.55 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=70.1
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEE--------EEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCe
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYR--------LRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSL 422 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~--------vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr 422 (443)
..+.|||+|||..+|.+++.++|++ ||.|.. |+|.++. |+-+|-|.+.|.-.++..-|++ |++..|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 4567999999999999999999999 997763 6777766 8999999999999999999999 999999999
Q ss_pred eeEEeecC
Q 013446 423 PIRVSPSK 430 (443)
Q Consensus 423 ~L~V~~Ak 430 (443)
.|+|+.|+
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99999885
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.92 E-value=5.1e-06 Score=78.74 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=68.1
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
.+||||.|+...++++-|.++|-+ -|.|..|.|+.+. +..+ ||||.|.++.+..-|++ +||..+.++.+.+.+-
T Consensus 9 drtl~v~n~~~~v~eelL~Elfiq-aGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQ-AGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhc-cCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 489999999999999999999999 7999999998877 4555 99999999999999999 9999999999988774
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.72 E-value=0.00015 Score=61.15 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=57.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcC--CCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccC----Ccce
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGC--GQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLG----FYPV 326 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~--G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~----Gr~I 326 (443)
.+||.|+|||...|.++|.+++... |...-+-+..|. ..+.|||||.|.++ +.|..-.. ++|..+. .+..
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~-~~~~~F~~~f~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSP-QAAIRFYKAFNGKKWPNFNSKKVC 79 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCH-HHHHHHHHHHcCCccccCCCCcEE
Confidence 3799999999999999999998753 555445555454 44799999999999 88888777 8887764 3445
Q ss_pred eecCCC
Q 013446 327 RVLPSK 332 (443)
Q Consensus 327 ~V~~S~ 332 (443)
.|.+++
T Consensus 80 ~i~yAr 85 (97)
T PF04059_consen 80 EISYAR 85 (97)
T ss_pred EEehhH
Confidence 555553
No 145
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.68 E-value=0.0001 Score=79.67 Aligned_cols=172 Identities=13% Similarity=0.029 Sum_probs=119.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCC-ceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSV-LRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~s-kG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
+.+-+-+.+.++.+.+.+++++|... .|....+..+. +.+ .|-++|.|... ..+++|+.-+...+-.+.+.+.+..
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~-~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQ-APFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCc-chHHHHHhcCchhhhhcceeecCCC
Confidence 34455567899999999999999532 22333333322 222 68999999999 9999999977777778888887643
Q ss_pred CCcCCCC------------------CCCCCCCccc-------ccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEE
Q 013446 333 TAIAPVN------------------PTFLPRTEDE-------REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 387 (443)
Q Consensus 333 ~~~~p~~------------------~~~~~~~~~~-------~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI 387 (443)
....... +...++.... --.....|||..||..+++.++.+.|...+-.+..|.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 2110000 0111111100 11245789999999999999999999985433334666
Q ss_pred eccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 388 LGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 388 ~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
-.-+ +..++.|||.|..++++..|.. -+.++++.+.|+|..
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 5444 6788999999999999999998 566778888899865
No 146
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.16 E-value=0.0012 Score=56.51 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=42.3
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-h--C---CceeCCeeeEEe
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C--S---GVVLGSLPIRVS 427 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-l--n---G~~l~Gr~L~V~ 427 (443)
..|+|.+++..++.++|++.|++ ||.|.+|.+.+. ...|+|.|.+.++|+.|+. + . +..+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~-~g~V~yVD~~~G----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQ-FGEVAYVDFSRG----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-S-S--EEEEE--TT-----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHh-cCCcceEEecCC----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46789999999999999999999 999999988542 3479999999999999997 3 3 456666665554
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.15 E-value=0.002 Score=52.90 Aligned_cols=66 Identities=26% Similarity=0.308 Sum_probs=47.0
Q ss_pred eeeeeeCCCCCCCHHHHH----HHhhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 355 RTIYCTNIDKKVTQADVK----LFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~----elF~~~fG-~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
..|+|.|||...+...|+ .+++. || +|..| +.+-|.|.|.+.+.|.+|.. |+|....|..|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdN-CGGkVl~v--------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDN-CGGKVLSV--------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHT-TT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhc-cCCEEEEE--------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 578999999988887654 56666 76 57665 23689999999999999999 999999999999999
Q ss_pred c
Q 013446 429 S 429 (443)
Q Consensus 429 A 429 (443)
.
T Consensus 74 ~ 74 (90)
T PF11608_consen 74 S 74 (90)
T ss_dssp S
T ss_pred c
Confidence 7
No 148
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.12 E-value=0.0071 Score=65.85 Aligned_cols=72 Identities=22% Similarity=0.214 Sum_probs=61.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCe-eEEEEec-CCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQV-VDCRICG-DPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I-~~v~i~~-dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
+.|-+.|+|++++-+||.++|.-|-.+ .+|.+.+ |++...|-|-|.|++. ++|.+|.. +++..|..+.|.+.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~-~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQ-EEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCH-HHHHhhhhccccCcccceeEEEE
Confidence 488899999999999999999988644 3454443 6667889999999999 99999998 99999999888765
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.08 E-value=0.0017 Score=55.52 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=36.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN 315 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~ 315 (443)
+.|+|.+++..++.++|++.|+.||.|..|.+.+... .|+|.|.+. ++|+.|+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~----~g~VRf~~~-~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT----EGYVRFKTP-EAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S----EEEEEESS----HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC----EEEEEECCc-chHHHHHH
Confidence 5789999999999999999999999999988876543 899999999 99999998
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.00 E-value=0.0036 Score=51.35 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=46.5
Q ss_pred cEEEEcCCCCCCcHHHH----HHHhhcCC-CeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 257 RTVYVSDIDQQVTEEQL----AALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL----~e~F~~~G-~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
..|||.|||.+.+-..| ++++..|| .|.++. .+.|.|.|.+. +.|.+|.+ |+|..+.|+.|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~-~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQ-EFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSH-HHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCH-HHHHHHHHhhcccccccceEEEEE
Confidence 57999999998776554 56677886 665541 26899999999 99999999 999999999999998
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 73
No 151
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.73 E-value=0.00019 Score=79.14 Aligned_cols=156 Identities=18% Similarity=0.131 Sum_probs=114.0
Q ss_pred CCcEEEEcCCCCCCcHH-HHHHHhhcCCCeeEEEEec-C-CCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEE-QLAALFVGCGQVVDCRICG-D-PNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTee-eL~e~F~~~G~I~~v~i~~-d-k~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S 331 (443)
..+...+.++.+..... .....|..+|.|+.+++.. . +.....++++.+... .+++.|....+.-+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~-~~~esat~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKH-GSAESATVPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccc-cchhhcccccccccCCccccCCCC
Confidence 35667788888776655 4567788899999887764 1 122334899999999 999999988888888888888776
Q ss_pred CCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEe--ccCCCCceEEEEEeCCHHHHH
Q 013446 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL--GDYHHSTRIAFVEFVMAESAI 409 (443)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~--~d~~~srGfAFVeF~t~e~A~ 409 (443)
+.....-.....+. ......++|++||+..+.+.||...|.+ +|.+..+++. .+.+.-+|+||++|..+++|.
T Consensus 649 d~~~~~~~~kvs~n----~~R~~~~~fvsnl~~~~~~~dl~~~~~~-~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~ 723 (881)
T KOG0128|consen 649 DAEEKEENFKVSPN----EIRDLIKIFVSNLSPKMSEEDLSERFSP-SGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAG 723 (881)
T ss_pred CchhhhhccCcCch----HHHHHHHHHHhhcchhhcCchhhhhcCc-cchhhhHHHHHHhhccccccceeeEeecCCchh
Confidence 43321111111111 1123468999999999999999999998 8877776554 445788999999999999999
Q ss_pred HHHhhCC
Q 013446 410 AALNCSG 416 (443)
Q Consensus 410 ~Al~lnG 416 (443)
+|+.++.
T Consensus 724 aaV~f~d 730 (881)
T KOG0128|consen 724 AAVAFRD 730 (881)
T ss_pred hhhhhhh
Confidence 9997433
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.65 E-value=0.0019 Score=64.74 Aligned_cols=76 Identities=26% Similarity=0.489 Sum_probs=64.6
Q ss_pred CcEEE-EcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 256 RRTVY-VSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 256 ~~tLf-VgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
..++| |+||++.+++++|...|..+|.|..+++..++.+ .+|||+|.|... ..+..++..+...++++++.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAG-NSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhc-hhHHHHhhcccCcccCcccccccCC
Confidence 45555 9999999999999999999999999998877754 599999999999 7777777666777889999988764
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.60 E-value=0.0018 Score=65.64 Aligned_cols=78 Identities=24% Similarity=0.295 Sum_probs=67.7
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEE--------EEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYR--------LRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLG 420 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~--------vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~ 420 (443)
....+|||.+||..+++.+|.++|.+ ||.|+. +.|.+|. +..||-|.|.|++...|+.|+. +++..+.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34579999999999999999999998 897753 3344443 6799999999999999999999 9999999
Q ss_pred CeeeEEeecC
Q 013446 421 SLPIRVSPSK 430 (443)
Q Consensus 421 Gr~L~V~~Ak 430 (443)
+..|+|..|.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9999999885
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.50 E-value=0.0026 Score=64.55 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=68.3
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hccccc
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--------DCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAGTML 321 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~--------~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l 321 (443)
.....+|||-+||..+++++|.++|.+||.|. .|.|.+|+.+ ++|-|.|.|.+. .+|++|+. +++..+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~-~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDP-PAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecCh-hhhhhhhhhhccccc
Confidence 44568999999999999999999999999874 2455566654 699999999999 99999999 999999
Q ss_pred CCcceeecCCC
Q 013446 322 GFYPVRVLPSK 332 (443)
Q Consensus 322 ~Gr~I~V~~S~ 332 (443)
.+.+|+|.++.
T Consensus 142 ~gn~ikvs~a~ 152 (351)
T KOG1995|consen 142 CGNTIKVSLAE 152 (351)
T ss_pred cCCCchhhhhh
Confidence 99999987764
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.20 E-value=0.021 Score=48.49 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=53.3
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEE-Eecc-------C-CCCceEEEEEeCCHHHHHHHHhhCCceeCCe-e
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR-LLGD-------Y-HHSTRIAFVEFVMAESAIAALNCSGVVLGSL-P 423 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vr-I~~d-------~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr-~ 423 (443)
.+-|.|-+.|+. ....|.+.|++ ||.|.... +.++ + ....++-.|+|.++.+|.+||..||..+.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 356888888888 55668888998 99988764 1111 1 2345689999999999999999999999885 5
Q ss_pred eEEeecCCC
Q 013446 424 IRVSPSKTP 432 (443)
Q Consensus 424 L~V~~Ak~~ 432 (443)
+-|.|.++.
T Consensus 84 vGV~~~~~~ 92 (100)
T PF05172_consen 84 VGVKPCDPA 92 (100)
T ss_dssp EEEEE-HHH
T ss_pred EEEEEcHHh
Confidence 668887543
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.19 E-value=0.01 Score=59.76 Aligned_cols=75 Identities=15% Similarity=0.350 Sum_probs=60.8
Q ss_pred eeeeeeCCCCCCCHHHH------HHHhhhcCCceEEEEEeccC---CCCce-E-EEEEeCCHHHHHHHHh-hCCceeCCe
Q 013446 355 RTIYCTNIDKKVTQADV------KLFFESVCGEVYRLRLLGDY---HHSTR-I-AFVEFVMAESAIAALN-CSGVVLGSL 422 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL------~elF~~~fG~V~~vrI~~d~---~~srG-f-AFVeF~t~e~A~~Al~-lnG~~l~Gr 422 (443)
.-+||-+||+.+..+++ .++|++ ||.|..|.+-++. +...+ + .||+|.+.++|..||. .+|..++||
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQ-yGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQ-YGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhh-ccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 56799999998877773 478999 9999998776543 22222 2 3999999999999999 999999999
Q ss_pred eeEEeecC
Q 013446 423 PIRVSPSK 430 (443)
Q Consensus 423 ~L~V~~Ak 430 (443)
.|+..|..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998864
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.15 E-value=0.014 Score=43.77 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=41.7
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHH
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 412 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al 412 (443)
+.|-|.|.+....+. +...|.. ||+|..+.+. ....+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~-fGeI~~~~~~----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFAS-FGEIVDIYVP----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHh-cCCEEEEEcC----CCCcEEEEEECCHHHHHhhC
Confidence 467788888776644 5558887 9999999885 33569999999999999985
No 158
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.13 E-value=0.018 Score=48.97 Aligned_cols=75 Identities=21% Similarity=0.217 Sum_probs=52.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEe-cC-------C-CCCceEEEEEEcChHHHHHHHHHhcccccCCcc
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC-GD-------P-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYP 325 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~-~d-------k-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~ 325 (443)
..+.|.|-+.|.. ....+.+.|++||.|.+..-. ++ + ......-.|.|.++ .+|.+||..||..+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~-~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNP-LSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSH-HHHHHHHTTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCH-HHHHHHHHhCCeEEcCcE
Confidence 3466888898888 567788999999999876411 10 1 11245899999999 999999999999998854
Q ss_pred -eeecCC
Q 013446 326 -VRVLPS 331 (443)
Q Consensus 326 -I~V~~S 331 (443)
+-|.++
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 456665
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.09 E-value=0.0091 Score=58.21 Aligned_cols=99 Identities=25% Similarity=0.291 Sum_probs=79.7
Q ss_pred HHHHHH-hcccccCCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEe
Q 013446 310 ARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL 388 (443)
Q Consensus 310 A~~Al~-lng~~l~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~ 388 (443)
|..|.. |++....|+.++|.++. ...|+|.||..-++.+.+.+.|+. ||.|....+.
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~---------------------~a~l~V~nl~~~~sndll~~~f~~-fg~~e~av~~ 64 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAM---------------------HAELYVVNLMQGASNDLLEQAFRR-FGPIERAVAK 64 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeec---------------------cceEEEEecchhhhhHHHHHhhhh-cCccchheee
Confidence 555665 89999999999999982 157999999999999999999998 9999876555
Q ss_pred ccC-CCCceEEEEEeCCHHHHHHHHh-hC--C--ceeCCeeeEEeecC
Q 013446 389 GDY-HHSTRIAFVEFVMAESAIAALN-CS--G--VVLGSLPIRVSPSK 430 (443)
Q Consensus 389 ~d~-~~srGfAFVeF~t~e~A~~Al~-ln--G--~~l~Gr~L~V~~Ak 430 (443)
-|. +++.+-++|+|...-.|.+|+. |+ | ....+++.-|.+..
T Consensus 65 vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 65 VDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred ecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 554 7889999999999999999998 53 2 44556666665543
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.03 E-value=0.017 Score=43.32 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=41.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHH
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAAL 314 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al 314 (443)
+.|-|.+.+.+..+ .+..+|..||+|..+.+-... .+.+|.|.+. .+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~-~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST----NWMYLKYKSR-KDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC----cEEEEEECCH-HHHHhhC
Confidence 56778888877664 455588899999998776333 3999999999 9999885
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.03 E-value=0.0088 Score=61.99 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=55.0
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc---C----C-C-------CceEEEEEeCCHHHHHHHHh-hC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD---Y----H-H-------STRIAFVEFVMAESAIAALN-CS 415 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d---~----~-~-------srGfAFVeF~t~e~A~~Al~-ln 415 (443)
..+++|.+-|||..-.-+-|.++|++ ||.|+.|+|++. + + . .+-+|+|+|...+.|.+|.+ ++
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 46789999999999999999999999 999999999765 2 1 1 35689999999999999999 54
Q ss_pred C
Q 013446 416 G 416 (443)
Q Consensus 416 G 416 (443)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 162
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.98 E-value=0.018 Score=57.22 Aligned_cols=62 Identities=24% Similarity=0.218 Sum_probs=51.2
Q ss_pred HHHHHHHhhhcCCceEEEEEeccCC---CCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 368 QADVKLFFESVCGEVYRLRLLGDYH---HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 368 eedL~elF~~~fG~V~~vrI~~d~~---~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
+.++.+.+++ ||+|..|.|.-+++ ..---.||+|...++|.+|+- |||.+|+||.++..|.+
T Consensus 300 ede~keEceK-yg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEK-YGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHh-hcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4578899999 99999998876652 222246999999999999998 99999999999887754
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.013 Score=62.56 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=60.9
Q ss_pred ccceeeeeeCCCCC------CCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCC-e
Q 013446 352 MCARTIYCTNIDKK------VTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGS-L 422 (443)
Q Consensus 352 ~~~~tIfV~NLp~~------~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~G-r 422 (443)
.-...|.|-|+|-- .-..-|.++|++ +|++..+.+|.+. +..+||.|++|.+..+|+.|+. +||..|+- +
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk-~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSK-AGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHh-hccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34478889999852 223456789999 8999999999887 7899999999999999999999 99988764 5
Q ss_pred eeEEe
Q 013446 423 PIRVS 427 (443)
Q Consensus 423 ~L~V~ 427 (443)
++.|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 66664
No 164
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.70 E-value=0.011 Score=61.31 Aligned_cols=66 Identities=29% Similarity=0.486 Sum_probs=56.6
Q ss_pred cccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecC---CCC------------CceEEEEEEcChHHHHHHHHH
Q 013446 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD---PNS------------VLRFAFIEFTDEAEGARAALN 315 (443)
Q Consensus 251 ~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~d---k~~------------skG~aFVeF~t~~e~A~~Al~ 315 (443)
.++.+++||.+-|||.+-.-+.|.++|+.+|.|..|+||.. +.. .+-+|+|+|... ++|.+|.+
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~-~~A~KA~e 304 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEV-EAARKARE 304 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhh-HHHHHHHH
Confidence 34568899999999999888999999999999999999965 211 156899999999 99999999
Q ss_pred hc
Q 013446 316 LA 317 (443)
Q Consensus 316 ln 317 (443)
+.
T Consensus 305 ~~ 306 (484)
T KOG1855|consen 305 LL 306 (484)
T ss_pred hh
Confidence 43
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.43 E-value=0.059 Score=48.72 Aligned_cols=54 Identities=28% Similarity=0.476 Sum_probs=45.0
Q ss_pred HHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecC
Q 013446 370 DVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 370 dL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak 430 (443)
+|.+.|.. ||.+.-+|+..+ .-.|+|.+-++|.+|+.++|..++|+.|+|..-.
T Consensus 52 ~ll~~~~~-~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQ-YGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHC-CS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE--
T ss_pred HHHHHHHh-CCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCC
Confidence 66778887 999998888654 3689999999999999999999999999998743
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.41 E-value=0.033 Score=56.26 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCCcHHHH------HHHhhcCCCeeEEEEecCC---CCCceEE--EEEEcChHHHHHHHHH-hcccccC
Q 013446 255 IRRTVYVSDIDQQVTEEQL------AALFVGCGQVVDCRICGDP---NSVLRFA--FIEFTDEAEGARAALN-LAGTMLG 322 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL------~e~F~~~G~I~~v~i~~dk---~~skG~a--FVeF~t~~e~A~~Al~-lng~~l~ 322 (443)
...-+||-+|++.+..|+. .++|.+||.|..|.+.+.. ++..+.+ ||.|.+. ++|..|+. .+|..++
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~k-edAarcIa~vDgs~~D 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTK-EDAARCIAEVDGSLLD 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecch-HHHHHHHHHhcccccc
Confidence 3467899999999776662 3789999999988776432 1223333 9999999 99999998 9999999
Q ss_pred CcceeecCCCC
Q 013446 323 FYPVRVLPSKT 333 (443)
Q Consensus 323 Gr~I~V~~S~~ 333 (443)
|+-|+..+..+
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999988643
No 167
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.39 E-value=0.0068 Score=59.10 Aligned_cols=62 Identities=27% Similarity=0.294 Sum_probs=52.6
Q ss_pred HHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 369 ADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 369 edL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
+||...|+..||+|..+.+..+- .+-.|-++|.|...++|++|++ |||.++.|++|..+++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 66666777339999998776554 4778899999999999999999 99999999999998863
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.29 E-value=0.011 Score=57.68 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=59.0
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC----------CCCc----eEEEEEeCCHHHHHHHHh-hCCc
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY----------HHST----RIAFVEFVMAESAIAALN-CSGV 417 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~----------~~sr----GfAFVeF~t~e~A~~Al~-lnG~ 417 (443)
.+..||+++||+.+...-|+++|+. ||.|-+|.+.... +..+ .-|.|+|.+...|..+.. |||.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~-yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQ-YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHh-ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 5689999999999999999999998 9999999885321 1111 157899999999999998 9999
Q ss_pred eeCCee
Q 013446 418 VLGSLP 423 (443)
Q Consensus 418 ~l~Gr~ 423 (443)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999974
No 169
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.20 E-value=0.055 Score=57.44 Aligned_cols=62 Identities=26% Similarity=0.321 Sum_probs=55.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHHh
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFV-GCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALNL 316 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~-~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~l 316 (443)
.+.+|||||+||.-+|-++|..+|. -||.|..+-|-.|++ =++|-|-|.|.+. .+-.+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnq-qsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQ-QAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeeccc-HHHHHHHhh
Confidence 3679999999999999999999998 699999999988853 3789999999999 999999974
No 170
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.02 E-value=0.088 Score=47.62 Aligned_cols=70 Identities=29% Similarity=0.351 Sum_probs=53.2
Q ss_pred CCcEEEEcCCC-----CCCcH----HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcc
Q 013446 255 IRRTVYVSDID-----QQVTE----EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYP 325 (443)
Q Consensus 255 ~~~tLfVgNLp-----~~tTe----eeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~ 325 (443)
+..||.|.=+. ..... .+|.+.|..||.+.-+++..+ .-+|.|.+. +.|.+|+.++|..++|+.
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~------~mwVTF~dg-~sALaals~dg~~v~g~~ 98 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD------TMWVTFRDG-QSALAALSLDGIQVNGRT 98 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT------CEEEEESSC-HHHHHHHHGCCSEETTEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC------eEEEEECcc-HHHHHHHccCCcEECCEE
Confidence 45777777655 11223 367788899999888888743 679999999 999999999999999999
Q ss_pred eeecCC
Q 013446 326 VRVLPS 331 (443)
Q Consensus 326 I~V~~S 331 (443)
|+|+..
T Consensus 99 l~i~LK 104 (146)
T PF08952_consen 99 LKIRLK 104 (146)
T ss_dssp EEEEE-
T ss_pred EEEEeC
Confidence 999864
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.87 E-value=0.023 Score=57.56 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=58.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G--~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
.-.+|||||-|.||+++|.+.....| .+.++++.... +.|+|||.|...+. .+...-++ |....+.|..=.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~Sd-Aa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSD-AAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecch-HHHHHHHHhcccceecCCCCeee
Confidence 47899999999999999999998877 56677776554 45899999999998 77777787 77778877554443
No 172
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.82 E-value=0.044 Score=56.39 Aligned_cols=74 Identities=23% Similarity=0.352 Sum_probs=62.7
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-----CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-----HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-----~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
..|.|.||.+++|.+.++.+|.- .|+|..++|+... ......|||.|.+...+..|-.|.++.+-++.|.|-++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~-lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGN-LGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhh-ccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 48899999999999999999997 7999999997643 34566999999999999998878888888887776554
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.42 E-value=0.084 Score=56.64 Aligned_cols=77 Identities=22% Similarity=0.240 Sum_probs=59.9
Q ss_pred cCCCcEEEEcCCCCC--CcHH----HHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccC-C
Q 013446 253 EIIRRTVYVSDIDQQ--VTEE----QLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLG-F 323 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~--tTee----eL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~-G 323 (443)
+.....|+|-|+|.- ...+ -|..+|+++|.|+...+..+. +..+||.|++|.+. .+|+.|++ ++|..++ .
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~-~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASM-RDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecCh-hhHHHHHHhcccceeccc
Confidence 345688999999853 2233 345688999999988777666 45799999999999 99999999 9998876 5
Q ss_pred cceeecC
Q 013446 324 YPVRVLP 330 (443)
Q Consensus 324 r~I~V~~ 330 (443)
+...|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 6776654
No 174
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.13 E-value=0.032 Score=54.46 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=57.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--------------CceEEEEEEcChHHHHHHHHH-hccc
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--------------VLRFAFIEFTDEAEGARAALN-LAGT 319 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--------------skG~aFVeF~t~~e~A~~Al~-lng~ 319 (443)
....||+++||+.+.-.-|+++|+.||.|-.|-+-+.... -..-|+|+|.+. ..|..... ||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~K-rvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISK-RVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHH-HHHHHHHHHhCCC
Confidence 4578999999999999999999999999998887653321 123489999999 88877666 9999
Q ss_pred ccCCcc
Q 013446 320 MLGFYP 325 (443)
Q Consensus 320 ~l~Gr~ 325 (443)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999865
No 175
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.12 E-value=0.04 Score=59.32 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=62.0
Q ss_pred ccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCce---eCCeeeE
Q 013446 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVV---LGSLPIR 425 (443)
Q Consensus 350 ~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~---l~Gr~L~ 425 (443)
+...+..|+|.||-..+|...|++++.+.+|.|... ++ .+-+.-|||.|.+.++|.+.+. |||.. -+++.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm---DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM---DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH---HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 345678999999999999999999999757777776 32 2334569999999999999999 99954 4667888
Q ss_pred Eeec
Q 013446 426 VSPS 429 (443)
Q Consensus 426 V~~A 429 (443)
+.|.
T Consensus 516 adf~ 519 (718)
T KOG2416|consen 516 ADFV 519 (718)
T ss_pred eeec
Confidence 8886
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.32 E-value=0.039 Score=53.92 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=45.4
Q ss_pred cCCCeeEEEEecCCC-CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 279 GCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 279 ~~G~I~~v~i~~dk~-~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+||+|+++.++..-. .-.|-++|.|... ++|++|+. ||+..+.|+||...++
T Consensus 92 kygEiee~~Vc~Nl~~hl~GNVYV~f~~E-e~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLGDHLVGNVYVKFRSE-EDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HhhhhhhhhhhcccchhhhhhhhhhcccH-HHHHHHHHHHcCccccCCcceeeec
Confidence 899999988875442 2378999999999 99999999 9999999999998876
No 177
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.23 E-value=0.15 Score=57.34 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCC--cceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGF--YPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~G--r~I~V~~ 330 (443)
...+.+|+++|...+....|...|..||.|..|.+-.. .-|++|.|.+. ..+++|++ |-|..++| +.++|.+
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg----q~yayi~yes~-~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG----QPYAYIQYESP-PAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC----CcceeeecccC-ccchhhHHHHhcCcCCCCCccccccc
Confidence 45789999999999999999999999999988766433 34999999999 99999999 99999986 7788888
Q ss_pred CCCC
Q 013446 331 SKTA 334 (443)
Q Consensus 331 S~~~ 334 (443)
++..
T Consensus 528 a~~~ 531 (975)
T KOG0112|consen 528 ASPP 531 (975)
T ss_pred ccCC
Confidence 7654
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.78 E-value=0.23 Score=49.54 Aligned_cols=61 Identities=25% Similarity=0.195 Sum_probs=50.1
Q ss_pred HHHHHHHhhcCCCeeEEEEecCCCCC---ceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 270 EEQLAALFVGCGQVVDCRICGDPNSV---LRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 270 eeeL~e~F~~~G~I~~v~i~~dk~~s---kG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
++++.+-+.+||.|..|.|..+++-. ----||+|... ++|.+|+- |||..|+|+.+...+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~-e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERV-ESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccH-HHHHHHHHhcCCceecceeeeheec
Confidence 56777888999999999888776432 33579999999 99999887 9999999999886653
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.60 E-value=0.12 Score=52.62 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=61.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCe-eeE
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSL-PIR 425 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG--~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr-~L~ 425 (443)
.....+||+||-..+|++||.+.+.. -| ++..+++..+. |.+||||+|...+..+.++.++ |--..|.|+ +.+
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S-~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQS-TGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHh-hhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34568999999999999999998887 46 44555554443 7899999999999999999999 888888887 444
Q ss_pred EeecC
Q 013446 426 VSPSK 430 (443)
Q Consensus 426 V~~Ak 430 (443)
+.|-|
T Consensus 157 ~~~NK 161 (498)
T KOG4849|consen 157 LSYNK 161 (498)
T ss_pred eccch
Confidence 45543
No 180
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=92.17 E-value=0.1 Score=54.33 Aligned_cols=69 Identities=26% Similarity=0.347 Sum_probs=56.7
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc--CCCCceEEEEEeCCHHHHHHHHh-hCC-ceeCCeeeEEeecC
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMAESAIAALN-CSG-VVLGSLPIRVSPSK 430 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d--~~~srGfAFVeF~t~e~A~~Al~-lnG-~~l~Gr~L~V~~Ak 430 (443)
.++|++||.+.++..||..+|... +++.. +....||+||++.+...|.+|++ ++| ..+.|.++.+.++-
T Consensus 2 nklyignL~p~~~psdl~svfg~a-------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA-------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc-------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 478999999999999999999862 22211 12346899999999999999999 888 57999999998874
No 181
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.78 E-value=1.1 Score=38.80 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=50.5
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCC
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS 421 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~G 421 (443)
..+.+...|..++.++|..+....-..|..++|.+|...++-.+.++|.+.++|..-.. +||..+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444445555666677766665334678889999876788899999999999999998 99988765
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.41 E-value=1.2 Score=36.82 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=40.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN 315 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~ 315 (443)
.....||+ .|......||.++|++||.|. |..+.|. -|||..... +.|..++.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-----SAfV~l~~r-~~~~~v~~ 60 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-----SAFVALHNR-DQAKVVMN 60 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-----EEEEEECCC-HHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-----cEEEEeecH-HHHHHHHH
Confidence 34677777 999999999999999999874 4455443 699999999 99998887
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.59 E-value=1.1 Score=36.91 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=38.6
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~ 413 (443)
...+|+ .|.++...||.++|++ ||.|. |.++.|. -|||....++.|..+++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFsp-fG~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSP-FGQIY-VSWINDT-----SAFVALHNRDQAKVVMN 60 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCC-CCCEE-EEEECTT-----EEEEEECCCHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhcc-CCcEE-EEEEcCC-----cEEEEeecHHHHHHHHH
Confidence 456666 9999999999999999 99765 4454543 69999999999999987
No 184
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.12 E-value=0.18 Score=53.15 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=60.6
Q ss_pred CCcEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp~~-tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
+.+.|-+.-.++. -|.++|..+|.+||.|..|.+-.... .|.|.|.+. .+|-.|....+.+|.++.|+|.|-.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~----~a~vTF~t~-aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL----HAVVTFKTR-AEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh----hheeeeecc-ccccchhccccceecCceeEEEEec
Confidence 4466666666776 56899999999999999998865533 799999999 8887788888999999999999864
No 185
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=88.62 E-value=0.64 Score=43.41 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=48.0
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCce---EEEE--EeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCC----
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEV---YRLR--LLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGS---- 421 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V---~~vr--I~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~G---- 421 (443)
..+|.|++||+.+|++++.+.+.+.++.- .++. ..... ...-.-|||.|.+.+++..-.. ++|..+-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 46999999999999999999777644544 3333 22221 2234579999999999888887 99966543
Q ss_pred -eeeEEeec
Q 013446 422 -LPIRVSPS 429 (443)
Q Consensus 422 -r~L~V~~A 429 (443)
.+-.|++|
T Consensus 87 ~~~~~VE~A 95 (176)
T PF03467_consen 87 EYPAVVEFA 95 (176)
T ss_dssp EEEEEEEE-
T ss_pred CcceeEEEc
Confidence 35566776
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.59 E-value=2.1 Score=33.27 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=43.5
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG--~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~ 413 (443)
..+|+|+|++ +++-+||+.+|..+|. ....|.++-|. -|-|-|.+.+.|.+||.
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 3689999985 5888999999998322 46678887774 57899999999999986
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.01 E-value=1.7 Score=39.30 Aligned_cols=73 Identities=21% Similarity=0.108 Sum_probs=53.3
Q ss_pred cccceeeeeeCCCC----CCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeE
Q 013446 351 EMCARTIYCTNIDK----KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 425 (443)
Q Consensus 351 ~~~~~tIfV~NLp~----~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~ 425 (443)
+.+..+|.|+=|.. .-+.+.|...++. ||.|.+|-+.. +--|.|.|.+..+|.+|++ +.. ..-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~-fGpI~SVT~cG-----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSV-FGPIQSVTLCG-----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHh-cCCcceeeecC-----CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 45567888865544 4444555566666 99999997753 3479999999999999999 655 56677788
Q ss_pred EeecC
Q 013446 426 VSPSK 430 (443)
Q Consensus 426 V~~Ak 430 (443)
.+|..
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 87754
No 188
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.00 E-value=0.16 Score=55.41 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=93.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
+..++||+|+...+..+-+..+...||.|.+++... |||.+|... .....|+. ++...++|..+.+..-..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~-~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKH-IGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhH-HHHHHHHHHhcccCCCcchhhccchhh
Confidence 558999999999999999999999999988876652 999999999 88888888 777788887776655322
Q ss_pred CcCCCCCCC-CC---CCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHH
Q 013446 334 AIAPVNPTF-LP---RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESA 408 (443)
Q Consensus 334 ~~~p~~~~~-~~---~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A 408 (443)
.+....... .. ..........+-.+|.|+|....+......+.- -+...+.+-..+. .+...++|-+|.+....
T Consensus 111 ~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~i-s~s~~s~~~~~e~d~h~~e~~~~~~~s~~~~ 189 (668)
T KOG2253|consen 111 TIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQI-SSSAASRRQIAEADDHCLELEKTETESNSAL 189 (668)
T ss_pred hhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhc-cchhhhhhhhHHHHHHHHHHHHhhccccccc
Confidence 211111000 00 000000111355678888887777766666653 2333333222222 34455566666555544
Q ss_pred HHHHh
Q 013446 409 IAALN 413 (443)
Q Consensus 409 ~~Al~ 413 (443)
.....
T Consensus 190 ~~~~~ 194 (668)
T KOG2253|consen 190 SKEAE 194 (668)
T ss_pred Ccccc
Confidence 44443
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=87.82 E-value=1.5 Score=41.23 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=45.3
Q ss_pred CHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hC--CceeCCeeeEEeecCCC
Q 013446 367 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 367 TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-ln--G~~l~Gr~L~V~~Ak~~ 432 (443)
....|+++|.. |+.+..+..++.+ +-..|.|.+.++|..|.. |+ +..+.|..+++.|+++.
T Consensus 8 ~~~~l~~l~~~-~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFST-YDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHT-T-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHh-cCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999998 8998888877765 347899999999999999 99 99999999999998643
No 190
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.56 E-value=1.2 Score=47.03 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=60.7
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCC
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS 421 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~G 421 (443)
++.|.|-.+|..+|-.||..++....-.|..++|++|....+-...|.|.+.++|..-.+ +||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 578889999999999999999988556799999999877778899999999999999998 99977765
No 191
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.20 E-value=3 Score=32.75 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 364 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 364 ~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
..++-++++.-+.. |+ -..|+. | .+|| ||.|.+.++|++|.. .+|+.+.+.+|.++
T Consensus 10 ~~~~v~d~K~~Lr~-y~-~~~I~~--d---~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 10 HGVTVEDFKKRLRK-YR-WDRIRD--D---RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CCccHHHHHHHHhc-CC-cceEEe--c---CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 35788999999998 65 333332 3 2455 799999999999999 99999999988764
No 192
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=86.99 E-value=0.46 Score=51.47 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=58.8
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hccccc---CCcce
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFV-GCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTML---GFYPV 326 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~-~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l---~Gr~I 326 (443)
....+..|||.||=.-.|.-+|++++. .+|.|++.+| |+ -+..|||.|.+. +.|.+-.. |+|..+ +++.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk--IKShCyV~yss~-eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK--IKSHCYVSYSSV-EEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH--hhcceeEecccH-HHHHHHHHHHhccccCCCCCcee
Confidence 445678999999999999999999998 5677777633 22 235899999999 88877777 888765 35777
Q ss_pred eecCCC
Q 013446 327 RVLPSK 332 (443)
Q Consensus 327 ~V~~S~ 332 (443)
.+.|..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 777743
No 193
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=86.73 E-value=1.6 Score=47.14 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=48.6
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhc-CCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCC--ceeCCeee
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESV-CGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG--VVLGSLPI 424 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~-fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG--~~l~Gr~L 424 (443)
.+.|+++-||..+..++|+.||+.. |-++.+|.+.- ..+ =||+|++..||+.|.. |.. ..|.|++|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~----N~n-WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH----NDN-WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee----cCc-eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 4677889999999999999999842 55777776632 222 3899999999999986 533 34555543
No 194
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=86.33 E-value=0.82 Score=44.96 Aligned_cols=74 Identities=26% Similarity=0.311 Sum_probs=58.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEec-CCCCCceEEEEEEcChHHHHHHHHH-hc----ccccCCcceeecC
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEAEGARAALN-LA----GTMLGFYPVRVLP 330 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~-dk~~skG~aFVeF~t~~e~A~~Al~-ln----g~~l~Gr~I~V~~ 330 (443)
..|||.||+.-+.-+.|.+-|+.||+|....++- |.....+-++|+|... -.+.+|+. +. +....+.+.-|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k-~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKK-PNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcc-hhHHHHHHHhccCccccCCCCCccCCCh
Confidence 7899999999999999999999999998765554 4466788999999999 88888887 42 2334566766665
Q ss_pred C
Q 013446 331 S 331 (443)
Q Consensus 331 S 331 (443)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=84.05 E-value=9 Score=33.13 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=47.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcC-CCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccC
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLG 322 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~-G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~ 322 (443)
..+.+...|..++-++|..+.+.+ ..|..++|++|...++=.+.+.|++. +.|+.-.. +||..+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~-~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQ-ESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCH-HHHHHHHHHhCCCccC
Confidence 344444445556667776665655 47788899988765566789999999 99999887 9998764
No 196
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=83.54 E-value=0.86 Score=37.89 Aligned_cols=72 Identities=24% Similarity=0.216 Sum_probs=45.8
Q ss_pred EEEEEcChHHHHHHHHHhcc--cccCCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhh
Q 013446 299 AFIEFTDEAEGARAALNLAG--TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 376 (443)
Q Consensus 299 aFVeF~t~~e~A~~Al~lng--~~l~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~ 376 (443)
|.|.|.+. .-|+..+.+.. ..+++..+.|.-+. ..-....+-.-......++|.|+|||...++++|++.++
T Consensus 1 AlITF~e~-~VA~~i~~~~~~~v~l~~~~~~V~v~P-----~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEE-GVAQRILKKKKHPVPLEDCCVRVKVSP-----VTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcH-HHHHHHHhCCEEEEEECCEEEEEEEEe-----EecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 67999999 88998888433 33556555554331 000000111112234568999999999999999998765
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.08 E-value=1.9 Score=43.45 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=52.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcc-eeecCC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYP-VRVLPS 331 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~-I~V~~S 331 (443)
+.=|-|-++++.-+ .-|..+|.+||.|++...-..- .+-+|.|... -.|++||..+|..|+|.. |-|..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng----NwMhirYssr-~~A~KALskng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG----NWMHIRYSSR-THAQKALSKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC----ceEEEEecch-hHHHHhhhhcCeeeccceEEeeeec
Confidence 34455567766544 4567889999999887554222 3889999999 999999999999998854 455554
No 198
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.19 E-value=2.8 Score=42.22 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=50.3
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCCeee-EEee
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPI-RVSP 428 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L-~V~~ 428 (443)
.=|-|-+.|+.-. .-|..+|++ ||.|...... ..-.+-+|.|.++-+|.+||+.||+.|+|-.+ -|..
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~-cG~Vvkhv~~----~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSR-CGEVVKHVTP----SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHh-hCeeeeeecC----CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 4455666666543 457788998 9999876543 23458999999999999999999999998743 3443
No 199
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=81.80 E-value=7.1 Score=30.36 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=41.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcC---CCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGC---GQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN 315 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~---G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~ 315 (443)
..|+|.|++ +.+.++|+.+|..| .....|..+.|. -|-|.|.+. +.|.+|+.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~-~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDE-ETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCH-HHHHHHHH
Confidence 679999985 47778999999988 134567777665 488999999 99999986
No 200
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=80.57 E-value=2.5 Score=39.43 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=43.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhc-CCCe---eEEEEecCCC----CCceEEEEEEcChHHHHHHHHH-hcccccC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVG-CGQV---VDCRICGDPN----SVLRFAFIEFTDEAEGARAALN-LAGTMLG 322 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~-~G~I---~~v~i~~dk~----~skG~aFVeF~t~~e~A~~Al~-lng~~l~ 322 (443)
....|-|++||+..||+++.+.+++ ++.. ..+.-..... ....-|+|.|.+. +++..... ++|..+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~-~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNP-EDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSC-HHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCH-HHHHHHHHhcCCcEEE
Confidence 4579999999999999999998877 6655 2332111111 1246799999999 88888777 8887753
No 201
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.18 E-value=6.5 Score=31.13 Aligned_cols=58 Identities=21% Similarity=0.285 Sum_probs=33.5
Q ss_pred CCCHHHHHHHhhhcCC----ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 365 KVTQADVKLFFESVCG----EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 365 ~~TeedL~elF~~~fG----~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
.++..+|..++....| .|-.++|.. .|+||+-... .|..+++ |++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5788888888887333 455666632 4889987655 6777777 9999999999999875
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=79.69 E-value=0.82 Score=46.48 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=59.0
Q ss_pred eeeeeeCCCCCCCHHHHH---HHhhhcCCceEEEEEeccC----C-CCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeE
Q 013446 355 RTIYCTNIDKKVTQADVK---LFFESVCGEVYRLRLLGDY----H-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 425 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~---elF~~~fG~V~~vrI~~d~----~-~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~ 425 (443)
.-+||-+|+..+-.+++. +.|.+ ||.|..|.+-++. + ....-++|+|...++|..||. .+|+.+.|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgq-ygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQ-YGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccc-cccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 456777888776665554 57887 8999999887754 1 111247999999999999999 999999999988
Q ss_pred EeecCCC
Q 013446 426 VSPSKTP 432 (443)
Q Consensus 426 V~~Ak~~ 432 (443)
..+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8876543
No 203
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=79.67 E-value=8.1 Score=35.13 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=53.4
Q ss_pred cCCCcEEEEcCCCCCC-cHHHHH---HHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceee
Q 013446 253 EIIRRTVYVSDIDQQV-TEEQLA---ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~t-TeeeL~---e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V 328 (443)
+.+-.||.|.=|...+ ..+||+ ..++.||+|.++..+.. --|.|.|++. .+|-.|+.--+....|..++.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----qsavVvF~d~-~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----QSAVVVFKDI-TSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----ceEEEEehhh-HHHHHHHHhhcCCCCCceEEe
Confidence 4456888888766653 244444 45678999999988743 3799999999 999999984344666777777
Q ss_pred cCCC
Q 013446 329 LPSK 332 (443)
Q Consensus 329 ~~S~ 332 (443)
.|-+
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 6653
No 204
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=77.09 E-value=2.2 Score=46.89 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=59.1
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
...++||+|+...+.++-++.+... ||.|.++...+ |||.+|....-+..|+. ++-..++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhh-CCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3479999999999999999999998 99988875533 99999999999999998 888899988877655
No 205
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=76.92 E-value=5.9 Score=42.98 Aligned_cols=70 Identities=24% Similarity=0.393 Sum_probs=56.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhc--CCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcc--cccCCcceeec
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVG--CGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAG--TMLGFYPVRVL 329 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~--~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng--~~l~Gr~I~V~ 329 (443)
..+.|+++.||..+.+|+++.+|+. |-.+.+|.+-... -=||.|.+. .+|+.|.. |.. ..|.|++|..+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd-~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESD-TDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecc-hhHHHHHHHHHHHHHhhcCcchhhh
Confidence 4688899999999999999999974 7888888876544 368999999 99999988 543 55888888654
Q ss_pred C
Q 013446 330 P 330 (443)
Q Consensus 330 ~ 330 (443)
.
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 3
No 206
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=75.90 E-value=2.2 Score=48.25 Aligned_cols=70 Identities=31% Similarity=0.329 Sum_probs=58.1
Q ss_pred eeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCce--eCCeeeEEeecCCC
Q 013446 358 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVV--LGSLPIRVSPSKTP 432 (443)
Q Consensus 358 fV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~--l~Gr~L~V~~Ak~~ 432 (443)
.+.|.+-..+-..|..+|.+ ||.|.+.+.+++. ..|.|+|.+.+.|..|++ ++|.. .-|-+.+|.+|++.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~-yg~v~s~wtlr~~----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSD-YGSVASAWTLRDL----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcccccchHHHHHHHHHh-hcchhhheecccc----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 33444456777889999999 9999999988875 578999999999999999 99965 55788999999864
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=74.08 E-value=2.2 Score=45.27 Aligned_cols=68 Identities=24% Similarity=0.196 Sum_probs=54.8
Q ss_pred eeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecCC
Q 013446 359 CTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 359 V~NLp~~-~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak~ 431 (443)
+.-+|+. -|..+|...|-+ ||+|..|.+ +.+---|.|+|.+..+|-.|-..++..|++|.|+|-|-++
T Consensus 377 lek~~~glnt~a~ln~hfA~-fG~i~n~qv----~~~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQ-FGEIENIQV----DYSSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhccCCCCchHhhhhhhhhh-cCccccccc----cCchhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3334554 456889999999 999999877 2223458999999999988887899999999999999876
No 208
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=71.05 E-value=2.8 Score=42.74 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=59.6
Q ss_pred CCcEEEEcCCCCCCcHHHHH---HHhhcCCCeeEEEEecCCC--C---CceEEEEEEcChHHHHHHHHH-hcccccCCcc
Q 013446 255 IRRTVYVSDIDQQVTEEQLA---ALFVGCGQVVDCRICGDPN--S---VLRFAFIEFTDEAEGARAALN-LAGTMLGFYP 325 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~---e~F~~~G~I~~v~i~~dk~--~---skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~ 325 (443)
...-+||-+|+...-.+.+. +.|.+||.|..+.+..+.. . ..--++|.|... ++|..|+. .+|..++|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~-eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEE-EDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccch-HhhhhHHHHhhhHHhhhhh
Confidence 34667888999886555554 4788999999998887662 1 123489999999 99999999 9999999998
Q ss_pred eeecCCC
Q 013446 326 VRVLPSK 332 (443)
Q Consensus 326 I~V~~S~ 332 (443)
++..+..
T Consensus 155 lka~~gt 161 (327)
T KOG2068|consen 155 LKASLGT 161 (327)
T ss_pred hHHhhCC
Confidence 7776653
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=69.97 E-value=20 Score=28.35 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=33.5
Q ss_pred CCCcHHHHHHHhhcCC-----CeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 266 QQVTEEQLAALFVGCG-----QVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 266 ~~tTeeeL~e~F~~~G-----~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
..++..+|..++...+ .|-.+.+.. .|.||+-... .+..++. |++..+.|+++.|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~~--~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPEE--VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-TT---HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECHH--HHHHHHHHhcCCCCCCeeEEEEE
Confidence 4588889999887654 445666653 3999998876 6777777 999999999999874
No 210
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=69.22 E-value=12 Score=35.16 Aligned_cols=60 Identities=23% Similarity=0.210 Sum_probs=43.8
Q ss_pred cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hc--ccccCCcceeecCCCC
Q 013446 269 TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LA--GTMLGFYPVRVLPSKT 333 (443)
Q Consensus 269 TeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-ln--g~~l~Gr~I~V~~S~~ 333 (443)
..+.|+++|..++.+..+...+. -+-..|.|.+. +.|..|.. ++ +..+.|..+++.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s----FrRi~v~f~~~-~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS----FRRIRVVFESP-ESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT----TTEEEEE-SST-THHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC----CCEEEEEeCCH-HHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999998888877744 35789999999 99999998 88 8899999999988743
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=68.31 E-value=3 Score=47.22 Aligned_cols=72 Identities=29% Similarity=0.315 Sum_probs=60.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hccccc--CCcceeecCCCC
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTML--GFYPVRVLPSKT 333 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l--~Gr~I~V~~S~~ 333 (443)
-+.++-|.+-.++...|..+|..||.|.+.+..+|-+ .|.|+|.+. +.|..|+. ++|..+ -|-|.+|.+++.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N----~alvs~~s~-~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN----MALVSFSSV-ESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc----chhhhhHHH-HHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3455566666788899999999999999999988876 899999999 99999998 999774 488888888764
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.57 E-value=18 Score=38.55 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=57.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC-CCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLG 322 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~-G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~ 322 (443)
.+++|.|--+|..+|-.||..++..+ -.|.++++++|..-.+=...|.|++. ++|..... +||..+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q-~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQ-ADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccc-hhHHHHHHHcCCCcCC
Confidence 37999999999999999999998875 58899999997654455689999999 99999887 9998875
No 213
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=62.92 E-value=10 Score=33.41 Aligned_cols=109 Identities=10% Similarity=-0.043 Sum_probs=70.2
Q ss_pred CCcHHHHHHHhhc-CCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCCCCcCCCCCCCCCC
Q 013446 267 QVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 345 (443)
Q Consensus 267 ~tTeeeL~e~F~~-~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~~~~~p~~~~~~~~ 345 (443)
..+-..|.+.+.. ++....+.+..- +.++..+.|.+. +++..++......++|..+.+...+....+.
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l---~~~~fl~~F~~~-~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~------- 96 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL---GDNLFLFQFESE-EDRQRVLKGGPWNFNGHFLILQRWSPDFNPS------- 96 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe---CCCeEEEEEEec-cceeEEEecccccccccchhhhhhccccccc-------
Confidence 3566667666654 233223333321 236999999999 9999988877777888888887664221111
Q ss_pred CcccccccceeeeeeCCCCC-CCHHHHHHHhhhcCCceEEEEEe
Q 013446 346 TEDEREMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLL 388 (443)
Q Consensus 346 ~~~~~~~~~~tIfV~NLp~~-~TeedL~elF~~~fG~V~~vrI~ 388 (443)
. ..-....-=|.|.|||.. .+++-++.+-+. +|++..+...
T Consensus 97 ~-~~~~~~~vWVri~glP~~~~~~~~~~~i~~~-iG~~i~vD~~ 138 (153)
T PF14111_consen 97 E-VKFEHIPVWVRIYGLPLHLWSEEILKAIGSK-IGEPIEVDEN 138 (153)
T ss_pred c-cceeccchhhhhccCCHHHhhhHHHHHHHHh-cCCeEEEEcC
Confidence 1 000112234778999987 777778888887 8999988663
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.35 E-value=52 Score=36.19 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=33.5
Q ss_pred cCCCcEEEEcCCCCC-CcHHHHHHHhhcC----CCeeEEEEecC
Q 013446 253 EIIRRTVYVSDIDQQ-VTEEQLAALFVGC----GQVVDCRICGD 291 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~-tTeeeL~e~F~~~----G~I~~v~i~~d 291 (443)
...+++|-|-|+.|+ +.-.+|.-+|+.| |.|.+|.|++.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 556799999999998 8899999999866 59999999854
No 215
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=41.80 E-value=40 Score=29.34 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=31.8
Q ss_pred CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcc
Q 013446 268 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAG 318 (443)
Q Consensus 268 tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng 318 (443)
.+-++|.+.|+.|.++. ++.+.++....|++.|.|...-..-..|+.|..
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHHHHH
Confidence 35688999999998764 556666656689999999997566666777543
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=40.82 E-value=1e+02 Score=24.14 Aligned_cols=54 Identities=24% Similarity=0.283 Sum_probs=41.4
Q ss_pred CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 267 ~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
.++-++++..+..|+- .+|..|+. | -||.|.+. .+|+++.. .+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t---G-fYIvF~~~-~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT---G-FYIVFNDS-KEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC---E-EEEEECCh-HHHHHHHHhcCCCEEEEEEEEe
Confidence 5788999999999872 33444543 3 48999999 99999998 8888887766554
No 217
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.96 E-value=84 Score=25.86 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=41.2
Q ss_pred eeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh
Q 013446 359 CTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413 (443)
Q Consensus 359 V~NLp~~~TeedL~elF~~~fG-~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~ 413 (443)
.--++..++..+|++.++..|| .|.+|..+.-+. ..-=|||.+..-++|.....
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcEEEEEEeCCCCcHHHHHH
Confidence 3336899999999999999898 688887655442 23369999998888877654
No 218
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=35.92 E-value=1.1e+02 Score=24.83 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=41.2
Q ss_pred eeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh
Q 013446 357 IYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413 (443)
Q Consensus 357 IfV~NLp~~~TeedL~elF~~~fG-~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~ 413 (443)
-|+-.++..++..+|++.++.+|| .|..|..+.-++ ..-=|||.+..-+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CceEEEEEECCCCcHHHHHH
Confidence 344457899999999999999888 677776654432 22359999988877776544
No 219
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=35.12 E-value=22 Score=35.03 Aligned_cols=42 Identities=33% Similarity=0.449 Sum_probs=28.6
Q ss_pred eeehhhcccccchhhhhhhhhhhhhhhhh------hhhhhHHHHhhhhhcc
Q 013446 73 SLRLFSFIDQSKVKIFERVNQVQEGKKER------KKETMAVVESASQDSA 117 (443)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~av~~~~~~~~~ 117 (443)
-|+-.||..|+||+||.| +...+.++| .|. |-..|.||.+++
T Consensus 16 ~l~sls~~t~s~~~iFDR--~~KR~qrdrAa~~~d~k~-dylkeeig~rla 63 (325)
T KOG2940|consen 16 FLASLSFSTESKVKIFDR--DLKRIQRDRAAWLSDQKN-DYLKEEIGDRLA 63 (325)
T ss_pred HHHHhhccchhhhHhhhh--HHHHHHHhHHhhcchhhh-hHHHHHHHHHHH
Confidence 367789999999999998 334444443 233 667777776653
No 220
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=34.65 E-value=40 Score=29.32 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=25.7
Q ss_pred eeeeeCCCCC---------CCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCC
Q 013446 356 TIYCTNIDKK---------VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM 404 (443)
Q Consensus 356 tIfV~NLp~~---------~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t 404 (443)
+++|-|++.+ .+.+.|++.|.. |..++ ++.+.+..-++|++.|+|..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~-f~p~k-v~~l~~~~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAE-FNPLK-VKPLYGKQGHTGFAIVEFNK 65 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH----SE-EEEEEETTEEEEEEEEE--S
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHh-cCCce-eEECcCCCCCcEEEEEEECC
Confidence 4556666543 355889999998 77765 44545545678999999985
No 221
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=32.77 E-value=62 Score=32.78 Aligned_cols=156 Identities=14% Similarity=0.160 Sum_probs=93.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC---------CCceEEEEEEcChHHHHHHHHH--hcc-----
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---------SVLRFAFIEFTDEAEGARAALN--LAG----- 318 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~---------~skG~aFVeF~t~~e~A~~Al~--lng----- 318 (443)
.+|.|...|+..+++-..+...|-+||+|++|.++.+.. +......+.|-+. +.+..... |+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr-~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSR-EICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeech-HHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999986541 2356789999999 66544322 221
Q ss_pred cccCCcceeecCCCC-----CcCCCCC-CC---C-C--CCcccccccceeeeeeCCCCCCCHHHHH-HH---hhhcCC--
Q 013446 319 TMLGFYPVRVLPSKT-----AIAPVNP-TF---L-P--RTEDEREMCARTIYCTNIDKKVTQADVK-LF---FESVCG-- 380 (443)
Q Consensus 319 ~~l~Gr~I~V~~S~~-----~~~p~~~-~~---~-~--~~~~~~~~~~~tIfV~NLp~~~TeedL~-el---F~~~fG-- 380 (443)
+.+....|.+.+..- .....+. .+ . + .-.-...+.++.|.|. +...+..+++. +- +.. -+
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~-~~n~ 170 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKN-SNNK 170 (309)
T ss_pred HhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhcc-CCCc
Confidence 334455555544321 1000000 00 0 0 0001122345677765 44555444432 22 221 13
Q ss_pred --ceEEEEEeccC----CCCceEEEEEeCCHHHHHHHHh
Q 013446 381 --EVYRLRLLGDY----HHSTRIAFVEFVMAESAIAALN 413 (443)
Q Consensus 381 --~V~~vrI~~d~----~~srGfAFVeF~t~e~A~~Al~ 413 (443)
-+.+|.|+... .-++.||.++|-+...|...++
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~d 209 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLD 209 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHH
Confidence 25666766422 3467799999999999999998
No 222
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.55 E-value=93 Score=32.87 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=50.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcc
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYP 325 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~-I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~ 325 (443)
.-.+.|-|.|+|.....++|...|..|+. =-+|+++.|. .+|-.|.+. ..|..||.+...++.-++
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~-~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSV-NRAAEALTLKHDWLKIRP 455 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecch-HHHHHHhhccCceEEeee
Confidence 34688999999999989999999999863 2355555554 799999999 888889987444443333
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=32.09 E-value=49 Score=33.40 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=35.7
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCc-eEEEEEeccCCCCceEEEEEeCCH
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGE-VYRLRLLGDYHHSTRIAFVEFVMA 405 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~-V~~vrI~~d~~~srGfAFVeF~t~ 405 (443)
.+-|+++||+..+...||+..+.+ -|. ..++.+ .-+.|-||++|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~-~~~~pm~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRK-RECTPMSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHh-cCCCceeEee----ecCCcceeEecCCc
Confidence 356999999999999999999987 343 344544 23467899999764
No 224
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=31.28 E-value=97 Score=31.43 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=59.8
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---------CCCceEEEEEeCCHHHHHHHHh--h---CC--
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---------HHSTRIAFVEFVMAESAIAALN--C---SG-- 416 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~---------~~srGfAFVeF~t~e~A~~Al~--l---nG-- 416 (443)
.++.+...|+..+++-......|-+ ||.|.+|+++.+. .+......+-|-+++.|..--+ | +-
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~-~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVK-FGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhc-cCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999998 9999999998654 1344578999999987766543 2 22
Q ss_pred ceeCCeeeEEeecC
Q 013446 417 VVLGSLPIRVSPSK 430 (443)
Q Consensus 417 ~~l~Gr~L~V~~Ak 430 (443)
..|....|.|.+..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 56777788887753
No 225
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.03 E-value=1.2e+02 Score=32.03 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=48.1
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCcee
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVL 419 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG-~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l 419 (443)
-...|-|-++|.....+||...|+. |+ .=-.|.++-|. -||-.|.+...|..||.+..-++
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~-yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~kh~~l 451 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFET-YQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTLKHDWL 451 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHH-hhcCCceeEEeecc-----eeEEeecchHHHHHHhhccCceE
Confidence 4568889999999999999999998 65 34455665554 68999999999999998644343
No 226
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=24.67 E-value=35 Score=20.10 Aligned_cols=16 Identities=69% Similarity=0.829 Sum_probs=12.0
Q ss_pred HHhccCCccccccCCc
Q 013446 172 LFSKLNPMAEEFVPPS 187 (443)
Q Consensus 172 lfs~~gpla~~~~PP~ 187 (443)
+.+++||.|.+|+|..
T Consensus 2 ~~s~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 2 KSSKLNPNAPEFVPSS 17 (18)
T ss_dssp -SSSSSTTSSSS-TTT
T ss_pred cccccCCCCccccCCC
Confidence 3578999999999975
No 227
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=20.89 E-value=1.4e+02 Score=24.79 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=25.9
Q ss_pred eeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC
Q 013446 358 YCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDY 391 (443)
Q Consensus 358 fV~NLp~~~TeedL~elF~~~fG-~V~~vrI~~d~ 391 (443)
++-.++..+|..+|++.++.+|| .|..|..+.-+
T Consensus 23 ~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~ 57 (92)
T PRK05738 23 YVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVK 57 (92)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeC
Confidence 33347899999999999999998 57777655433
Done!